Citrus Sinensis ID: 018366
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | 2.2.26 [Sep-21-2011] | |||||||
| A9X7L0 | 364 | Anthranilate N-methyltran | N/A | no | 0.943 | 0.925 | 0.829 | 1e-169 | |
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.983 | 0.972 | 0.518 | 1e-107 | |
| Q8W013 | 363 | Caffeic acid 3-O-methyltr | N/A | no | 0.971 | 0.955 | 0.523 | 1e-107 | |
| Q9XGV9 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.955 | 0.944 | 0.524 | 1e-107 | |
| Q6T1F5 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 1.0 | 0.978 | 0.504 | 1e-107 | |
| Q8LL87 | 350 | Caffeic acid 3-O-methyltr | N/A | no | 0.952 | 0.971 | 0.528 | 1e-106 | |
| P28002 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.994 | 0.972 | 0.515 | 1e-106 | |
| O04385 | 368 | (Iso)eugenol O-methyltran | N/A | no | 0.983 | 0.953 | 0.516 | 1e-106 | |
| O23760 | 370 | Caffeic acid 3-O-methyltr | N/A | no | 0.952 | 0.918 | 0.527 | 1e-105 | |
| Q43609 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.991 | 0.969 | 0.516 | 1e-105 |
| >sp|A9X7L0|ANMT_RUTGR Anthranilate N-methyltransferase OS=Ruta graveolens PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 594 bits (1531), Expect = e-169, Method: Compositional matrix adjust.
Identities = 283/341 (82%), Positives = 312/341 (91%), Gaps = 4/341 (1%)
Query: 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDR 78
SYS AMQL+M +VLPMATQ+AIQLGVFEIIAKA G+LSA EIA LQAQN KAP+MLDR
Sbjct: 24 SYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKAPGGRLSASEIATILQAQNPKAPVMLDR 83
Query: 79 MLRLLVSHRVLECSVS--SGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLG 136
MLRLLVSHRVL+CSVS +GERLYGLT VSKYFV ++DG SLG+FMALPLDKVFMESW+G
Sbjct: 84 MLRLLVSHRVLDCSVSGPAGERLYGLTSVSKYFVPDQDGASLGNFMALPLDKVFMESWMG 143
Query: 137 LRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVE 196
++ AVMEGGIPFNRVHGMHIFEYAS N F++TYH+AMFNHSTIA++RILEHY+GF+NV
Sbjct: 144 VKGAVMEGGIPFNRVHGMHIFEYASSNSKFSDTYHRAMFNHSTIALKRILEHYKGFENVT 203
Query: 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAI 256
+LVDVGGG GVTLSMI SKYP I+A+NFDLPHVVQDA SY GVEHVGGNMF+SVPEGDAI
Sbjct: 204 KLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVVQDAASYPGVEHVGGNMFESVPEGDAI 263
Query: 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT 316
LMKWILHCWDD+ CLRILKNCYKA P+NGKVIVMNS+VPE PEVSSSARETSLLDVLLMT
Sbjct: 264 LMKWILHCWDDEQCLRILKNCYKATPENGKVIVMNSVVPETPEVSSSARETSLLDVLLMT 323
Query: 317 RDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
RDGGGRERT+KEFTELAI AGFK INFA CVCNL+IMEFFK
Sbjct: 324 RDGGGRERTQKEFTELAIGAGFKGINFACCVCNLHIMEFFK 364
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Involved in the biosynthesis of acridine alkaloids. N-methyltransferase with a strict substrate specificity for anthranilate. No activity with anthranilic acid methyl ester, anthraniloyl CoA, 3- or 4-amino-benzoic acid, salicylic acid, catechol, eugenol, caffeic acid, quercetin, theobromin, theophyllin, putrescine and nicotinic acid among others. Ruta graveolens (taxid: 37565) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 1 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/361 (51%), Positives = 249/361 (68%), Gaps = 10/361 (2%)
Query: 5 SEIQLPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK---LSAPEI 61
S P+ N+ +EEE++ AMQLA VLPM ++AI+L + E+I K+G +S ++
Sbjct: 3 SATNTPQINS--DEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKSGAGAFVSPVDL 60
Query: 62 AAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS-----GERLYGLTPVSKYFVSNKDGV 116
AAQL N A +MLDR+LRLL S+ +LEC + + ERLYGL PV K+ N+DGV
Sbjct: 61 AAQLPTTNPDAHVMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDGV 120
Query: 117 SLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFN 176
S+ + DKV MESW L DAV++GGIPFN+ +GM FEY +P FN+ +++ M N
Sbjct: 121 SMAPLTLMNQDKVLMESWYHLSDAVVDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSN 180
Query: 177 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY 236
HSTI M++ILE Y GF ++ +VDVGGG G TL+MI SKYP IK +NFDLPHV++DAPSY
Sbjct: 181 HSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSY 240
Query: 237 AGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296
GVEHVGG+MF SVP+GDAI MKWI H W D+HC++ LKNCY A+P NGKVI+ ++PE
Sbjct: 241 PGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECVLPE 300
Query: 297 IPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFF 356
P+ + + +DV+++ + GG+ERT+KEF LA AAGFK N A C N +IME
Sbjct: 301 APDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAYNTWIMELL 360
Query: 357 K 357
K
Sbjct: 361 K 361
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/355 (52%), Positives = 249/355 (70%), Gaps = 8/355 (2%)
Query: 11 KQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK---LSAPEIAAQLQA 67
K + EEEE+ AM+LA VLPM ++AI+L + E+I K+G +S E+AAQL
Sbjct: 9 KNSMTKEEEEACLSAMRLASASVLPMVLKSAIELDLLELIKKSGPGAYVSPSELAAQLPT 68
Query: 68 QNVKAPMMLDRMLRLLVSHRVLECSVSSG-----ERLYGLTPVSKYFVSNKDGVSLGHFM 122
QN AP+MLDR+LRLL S+ VL C++ ERLY L PV K+ N+DGVS+ +
Sbjct: 69 QNPDAPVMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFLTKNEDGVSMAALL 128
Query: 123 ALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAM 182
+ DKV MESW L+DAV+EGGIPFN+ +GM FEY +P FN+ +++ M NHSTI M
Sbjct: 129 LMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMTAFEYHGKDPRFNKVFNQGMSNHSTIIM 188
Query: 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHV 242
++ILE Y+GFQ ++ +VDVGGG G TL+MI SKYP IK +NFDLPHV++DAPSY GV+HV
Sbjct: 189 KKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVDHV 248
Query: 243 GGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS 302
GG+MF SVP+GDAI MKWI H W D HCL+ LKNC++A+P+NGKVI+ ++PE P+ +
Sbjct: 249 GGDMFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPENGKVILAECLLPEAPDSTL 308
Query: 303 SARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
S + T +DV+++ + GG+ERT+KEF LA AGF+ C N +IME K
Sbjct: 309 STQNTVHVDVIMLAHNPGGKERTEKEFEALAKGAGFRGFIKVCCAYNSWIMELLK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/349 (52%), Positives = 245/349 (70%), Gaps = 8/349 (2%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK---LSAPEIAAQLQAQNVKAP 73
+EEE++ AMQLA VLPM ++AI+L + E+I KAG +S E+AAQL N +A
Sbjct: 13 DEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKAGAGAFVSPAELAAQLLTTNAEAH 72
Query: 74 MMLDRMLRLLVSHRVLECSVSS-----GERLYGLTPVSKYFVSNKDGVSLGHFMALPLDK 128
+MLDR+LRLL S+ +LEC + + +RLYGL PV K+ N+DGVS+ + DK
Sbjct: 73 VMLDRILRLLTSYAILECRLKTLPDGGVQRLYGLAPVCKFLTKNEDGVSMAPLALMNQDK 132
Query: 129 VFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEH 188
V MESW L+DAV++GGIPFN+ +GM FEY +P FN+ +++ M NHSTI M++ILE
Sbjct: 133 VLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILET 192
Query: 189 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD 248
Y GF ++ +VDVGGG G TL+MI SKYP IK +NFDLPHVV+DAPSY GVEHVGG+MF
Sbjct: 193 YTGFDGLKTVVDVGGGTGATLNMIISKYPSIKGINFDLPHVVEDAPSYPGVEHVGGDMFV 252
Query: 249 SVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS 308
SVP+GDAI MKWI H W D HC++ LK CY+A+P+NGKVI+ ++PE P+ + +
Sbjct: 253 SVPKGDAIFMKWICHDWSDAHCVKFLKKCYEALPENGKVILAECVLPEAPDTGLATKNVV 312
Query: 309 LLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
+DV+++ + GG+ERT+KEF LA A+GFK N C N +IME K
Sbjct: 313 HIDVIMLAHNPGGKERTEKEFQVLAKASGFKQFNKVCCAYNSWIMELLK 361
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/365 (50%), Positives = 249/365 (68%), Gaps = 8/365 (2%)
Query: 1 MRSLSEIQLPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK---LS 57
M + +E+ P +EEE+ AMQLA VLPM ++AI+L + E IAKAG +S
Sbjct: 1 MNTTTELIPPTFQVNDDEEEACMFAMQLASASVLPMVLKSAIELNLLESIAKAGPGAYVS 60
Query: 58 APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV-----SSGERLYGLTPVSKYFVSN 112
++AA L + P+MLDR+LRLL S+ VL C + + ERLYGL PV K+ N
Sbjct: 61 PSQLAAALPSSQPDTPVMLDRILRLLASYSVLNCKLRDLPDARVERLYGLAPVCKFLTKN 120
Query: 113 KDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHK 172
DGVS+ + + DK+ MESW L+DAV++GGIPFN+ +GM FEY +P FN+ +++
Sbjct: 121 SDGVSMAPLLLMNQDKILMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGKDPRFNKVFNQ 180
Query: 173 AMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD 232
M NHSTI M++IL+ Y+GF ++ +VDVGGG G TL+MI SKYP +K +NFDLPHVV+D
Sbjct: 181 GMSNHSTITMKKILQTYDGFGGLKTVVDVGGGTGATLNMIISKYPNLKGINFDLPHVVED 240
Query: 233 APSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292
APSYAGVEHVGG+MF SVP+GDAI MKWI H W D HCL LKNCYKA+P +GKVI+
Sbjct: 241 APSYAGVEHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLAFLKNCYKALPKDGKVILAEC 300
Query: 293 IVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYI 352
I+PE P+ + + L+DV+++ + GG+ERT+KEF AGFK N A C N ++
Sbjct: 301 ILPEAPDSKLTTKNVILIDVIMLAHNPGGKERTEKEFEAFGKQAGFKSFNKACCAYNTWV 360
Query: 353 MEFFK 357
+E++K
Sbjct: 361 IEYYK 365
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ammi majus (taxid: 48026) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1 | Back alignment and function description |
|---|
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/348 (52%), Positives = 247/348 (70%), Gaps = 8/348 (2%)
Query: 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK---LSAPEIAAQLQAQNVKAPM 74
EEE+ AM LA VLPM ++AI+L + E+IAKAG +S E+AAQL N +AP+
Sbjct: 3 EEEACLFAMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPI 62
Query: 75 MLDRMLRLLVSHRVLECSVSS-----GERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKV 129
MLDR+LRLL ++ VL+C +++ ERLYGL PV K+ N DGVS+ + + DKV
Sbjct: 63 MLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKV 122
Query: 130 FMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHY 189
MESW L+DAV++GGIPFN+ +GM FEY +P FN+ +++ M NHSTI M++ILE Y
Sbjct: 123 LMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVY 182
Query: 190 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS 249
GF+ ++ +VDVGGG G TL+MI SKYP IK +NF+LPHVV+DAPS++GVEHVGG+MF S
Sbjct: 183 RGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVS 242
Query: 250 VPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL 309
VP+GDAI MKWI H W DDHC ++LKNCY+A+PDNGKVI+ ++PE P+ S + +
Sbjct: 243 VPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVVH 302
Query: 310 LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
+DV+++ + GG+ERT+KEF LA AGFK N +IME K
Sbjct: 303 VDVVMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Coffea canephora (taxid: 49390) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/365 (51%), Positives = 250/365 (68%), Gaps = 10/365 (2%)
Query: 1 MRSLSEIQLPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---KLS 57
M S E Q+ + +EE+ AMQLA VLPM ++A++L + EIIAKAG ++S
Sbjct: 1 MGSTGETQITPTH--ISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQIS 58
Query: 58 APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE-----RLYGLTPVSKYFVSN 112
EIA+QL N AP+MLDRMLRLL + +L CSV + + RLYGL V+KY V N
Sbjct: 59 PIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN 118
Query: 113 KDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHK 172
+DGVS+ + DKV MESW L+DAV++GGIPFN+ +GM FEY +P FN+ ++K
Sbjct: 119 EDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNK 178
Query: 173 AMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD 232
M +HSTI M++ILE Y GF+ ++ LVDVGGG G ++ I SKYP IK +NFDLPHV++D
Sbjct: 179 GMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED 238
Query: 233 APSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292
APSY GVEHVGG+MF S+P+ DA+ MKWI H W D+HCL+ LKNCY+A+PDNGKVIV
Sbjct: 239 APSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC 298
Query: 293 IVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYI 352
I+P P+ S + + +DV+++ + GG+ERT+KEF +LA AGF+ N YI
Sbjct: 299 ILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYI 358
Query: 353 MEFFK 357
MEF K
Sbjct: 359 MEFLK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|O04385|IEMT_CLABR (Iso)eugenol O-methyltransferase OS=Clarkia breweri GN=IEMT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/362 (51%), Positives = 255/362 (70%), Gaps = 11/362 (3%)
Query: 5 SEIQLPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA----GKLSAPE 60
+EIQ+ ++ +EE+ AMQLA VLPMA +AAI+L V EI+AK+ G +S E
Sbjct: 7 AEIQIIPTHSS--DEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAE 64
Query: 61 IAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV---SSG--ERLYGLTPVSKYFVSNKDG 115
IAAQL N +AP+MLDR+LRLL S+ V+ ++ SG ERLYGL PV K+ N+DG
Sbjct: 65 IAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDG 124
Query: 116 VSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMF 175
VSL F+ DKV +E W L+DA++EGGIPFN+ +GM+ F+Y + FN+ ++K M
Sbjct: 125 VSLAPFLLTATDKVLLEPWFYLKDAILEGGIPFNKAYGMNEFDYHGTDHRFNKVFNKGMS 184
Query: 176 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS 235
++STI M++ILE Y GF+ + +VDVGGG G SMI +KYP I A+NFDLPHV+QDAP+
Sbjct: 185 SNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA 244
Query: 236 YAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295
++GVEH+GG+MFD VP+GDAI +KWI H W D+HCL++LKNCY A+PD+GKVIV I+P
Sbjct: 245 FSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP 304
Query: 296 EIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEF 355
P+ S + + D L++ + GG+ERT+KEF LA+A+GF+ ASC N Y+MEF
Sbjct: 305 PSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEF 364
Query: 356 FK 357
K
Sbjct: 365 LK 366
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Catalyzes the methylation of the para-4-hydroxyl of both eugenol and (iso)eugenol to methyleugenol and isomethyleugenol, respectively. The resulting products are part of a complex mixture of low-molecular-weight volatile compounds emitted by the flowers to attract pollinators. Clarkia breweri (taxid: 36903) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 6 |
| >sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/351 (52%), Positives = 240/351 (68%), Gaps = 11/351 (3%)
Query: 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA------GKLSAPEIAAQLQAQNVK 71
+EE+ AMQLA VLPM +AAI+L V EI+AK+ +S EIAAQL N
Sbjct: 18 DEEANLFAMQLASASVLPMVLKAAIELDVLEIMAKSIPHGSGAYISPAEIAAQLPTTNPD 77
Query: 72 APMMLDRMLRLLVSHRVLECSV-----SSGERLYGLTPVSKYFVSNKDGVSLGHFMALPL 126
AP+MLDR+LRLL S+ V+ CS+ ERLYGL PV K+ N+DGVSL +
Sbjct: 78 APVMLDRVLRLLASYSVVTCSLRELPDGKVERLYGLAPVCKFLTKNEDGVSLAPLCLMNQ 137
Query: 127 DKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERIL 186
DKV MESW L+DA+++GGIPFN+ +GM FEY +P FN+ +++ M +HSTI M++I
Sbjct: 138 DKVLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKIF 197
Query: 187 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNM 246
E Y GF+ + +VDVGGG G LSMI +KYP IK +NFDLPHV++DAP Y GVEHVGG+M
Sbjct: 198 EMYTGFEALNTIVDVGGGTGAVLSMIVAKYPSIKGINFDLPHVIEDAPIYPGVEHVGGDM 257
Query: 247 FDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARE 306
F SVP+GDAI MKWI H W D+HCL+ LKNCY A+P++GKVIV I+P P+ S + +
Sbjct: 258 FVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPEHGKVIVAECILPLSPDPSLATKG 317
Query: 307 TSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
+D +++ + GG+ERT+KEF LAI AGFK A C N Y+MEF K
Sbjct: 318 VIHIDAIMLAHNPGGKERTEKEFEALAIGAGFKGFKVACCAFNTYVMEFLK 368
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Clarkia breweri (taxid: 36903) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/366 (51%), Positives = 251/366 (68%), Gaps = 12/366 (3%)
Query: 1 MRSLSEIQL-PKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK---L 56
M S E Q+ P Q +EE+ AMQLA VLPM +AAI+L + EI+AKAG L
Sbjct: 1 MGSTGETQMTPTQ---VSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFL 57
Query: 57 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS-----GERLYGLTPVSKYFVS 111
S +IA+QL +N AP+MLDRMLRLL S+ +L S+ + ERLYGL PV K+
Sbjct: 58 SPTDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTK 117
Query: 112 NKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYH 171
N++GVS+ + DKV +ESW L+DAV+EGGIPFN+ +GM FEY +P FN+ ++
Sbjct: 118 NEEGVSIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFN 177
Query: 172 KAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ 231
+ M +HSTI M++ILE Y+GF+ + +VDVGGG G L+MI SKYP IK +NFDLPHV++
Sbjct: 178 RGMADHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIE 237
Query: 232 DAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291
DAP Y GVEHVGG+MF SVP+GDAI MKWI H W D+HCL+ LKNCY A+PDNGKVI+
Sbjct: 238 DAPQYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGE 297
Query: 292 SIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLY 351
I+P P+ S + + +DV+++ + GG+ERT++EF LA AGF+ N A N Y
Sbjct: 298 CILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTY 357
Query: 352 IMEFFK 357
++EF K
Sbjct: 358 VIEFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Prunus dulcis (taxid: 3755) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | ||||||
| 342161927 | 364 | RecName: Full=Anthranilate N-methyltrans | 0.943 | 0.925 | 0.829 | 1e-167 | |
| 224128073 | 358 | catechol o-methyltransferase related [Po | 0.952 | 0.949 | 0.606 | 1e-123 | |
| 225453640 | 359 | PREDICTED: quercetin 3-O-methyltransfera | 0.943 | 0.938 | 0.579 | 1e-118 | |
| 224068173 | 359 | catechol o-methyltransferase [Populus tr | 0.952 | 0.947 | 0.578 | 1e-117 | |
| 284437809 | 377 | O-methyltransferase-like protein [Prunus | 0.943 | 0.893 | 0.586 | 1e-117 | |
| 255548061 | 359 | o-methyltransferase, putative [Ricinus c | 0.955 | 0.949 | 0.571 | 1e-115 | |
| 147785075 | 382 | hypothetical protein VITISV_028012 [Viti | 0.943 | 0.882 | 0.569 | 1e-114 | |
| 225453636 | 358 | PREDICTED: quercetin 3-O-methyltransfera | 0.943 | 0.941 | 0.569 | 1e-114 | |
| 224068181 | 336 | catechol o-methyltransferase [Populus tr | 0.929 | 0.988 | 0.589 | 1e-114 | |
| 19550749 | 364 | caffeic acid O-methyltransferase II [Nic | 0.991 | 0.972 | 0.534 | 1e-113 |
| >gi|342161927|sp|A9X7L0.1|ANMT_RUTGR RecName: Full=Anthranilate N-methyltransferase; Short=RgANMT gi|115315700|gb|ABI93949.1| anthranilate N-methyltransferase [Ruta graveolens] | Back alignment and taxonomy information |
|---|
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 283/341 (82%), Positives = 312/341 (91%), Gaps = 4/341 (1%)
Query: 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDR 78
SYS AMQL+M +VLPMATQ+AIQLGVFEIIAKA G+LSA EIA LQAQN KAP+MLDR
Sbjct: 24 SYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKAPGGRLSASEIATILQAQNPKAPVMLDR 83
Query: 79 MLRLLVSHRVLECSVS--SGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLG 136
MLRLLVSHRVL+CSVS +GERLYGLT VSKYFV ++DG SLG+FMALPLDKVFMESW+G
Sbjct: 84 MLRLLVSHRVLDCSVSGPAGERLYGLTSVSKYFVPDQDGASLGNFMALPLDKVFMESWMG 143
Query: 137 LRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVE 196
++ AVMEGGIPFNRVHGMHIFEYAS N F++TYH+AMFNHSTIA++RILEHY+GF+NV
Sbjct: 144 VKGAVMEGGIPFNRVHGMHIFEYASSNSKFSDTYHRAMFNHSTIALKRILEHYKGFENVT 203
Query: 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAI 256
+LVDVGGG GVTLSMI SKYP I+A+NFDLPHVVQDA SY GVEHVGGNMF+SVPEGDAI
Sbjct: 204 KLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVVQDAASYPGVEHVGGNMFESVPEGDAI 263
Query: 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT 316
LMKWILHCWDD+ CLRILKNCYKA P+NGKVIVMNS+VPE PEVSSSARETSLLDVLLMT
Sbjct: 264 LMKWILHCWDDEQCLRILKNCYKATPENGKVIVMNSVVPETPEVSSSARETSLLDVLLMT 323
Query: 317 RDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
RDGGGRERT+KEFTELAI AGFK INFA CVCNL+IMEFFK
Sbjct: 324 RDGGGRERTQKEFTELAIGAGFKGINFACCVCNLHIMEFFK 364
|
Source: Ruta graveolens Species: Ruta graveolens Genus: Ruta Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/343 (60%), Positives = 267/343 (77%), Gaps = 3/343 (0%)
Query: 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---KLSAPEIAAQLQAQNVKAPM 74
++E++ +AMQLA+ VLPM +AIQLG+FEIIAKAG KLSA ++AAQL +N APM
Sbjct: 16 KDENFGYAMQLALSSVLPMTMYSAIQLGIFEIIAKAGPDAKLSASDVAAQLPTKNPDAPM 75
Query: 75 MLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESW 134
MLDR+LRLL SH VL CSV ERLY L PVSK++V NKDGVSLG FMAL D VF++SW
Sbjct: 76 MLDRILRLLASHDVLGCSVDGSERLYSLAPVSKHYVRNKDGVSLGPFMALIQDNVFLQSW 135
Query: 135 LGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQN 194
L+DAV+EGG+ F+RVHG H FEY +P FN+ ++ AM+N +T+ +E +LE Y GF+N
Sbjct: 136 SQLKDAVLEGGVAFDRVHGAHAFEYPGLDPRFNQVFNTAMYNQTTVVLENMLEAYTGFKN 195
Query: 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGD 254
+++LV++GGG G T+ I SKYPQIK +NFDLPHV++ APS GVEHVGG+MF+SVP+GD
Sbjct: 196 LKQLVEIGGGMGHTIKAIISKYPQIKGINFDLPHVIEHAPSCPGVEHVGGDMFESVPKGD 255
Query: 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLL 314
AI +KWILH W DDHCL++LKNCYKAIPDNGKVIVM S++ + S +AR S LDVL+
Sbjct: 256 AIFLKWILHDWSDDHCLKLLKNCYKAIPDNGKVIVMESVLSITAKTSPAARAISQLDVLM 315
Query: 315 MTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
MT++ GG+ERT+ EF LA AGF+ I + + VCN ++MEFFK
Sbjct: 316 MTQNPGGKERTEHEFMALATGAGFRGIKYEAFVCNFWVMEFFK 358
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453640|ref|XP_002267179.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera] gi|147785074|emb|CAN75449.1| hypothetical protein VITISV_028011 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/338 (57%), Positives = 262/338 (77%), Gaps = 1/338 (0%)
Query: 20 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRM 79
E S+AMQL VLPM Q +I+LG+F+IIAK G+ SA EIA++L +N +AP+MLDRM
Sbjct: 21 EPCSYAMQLVTSSVLPMVMQTSIELGLFDIIAKLGQASASEIASRLPTKNPEAPIMLDRM 80
Query: 80 LRLLVSHRVLECSVSSG-ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLR 138
L LL +H VL CS G ER+Y LTPVSKYF SN+DGVS G +AL DKVFM+SW L+
Sbjct: 81 LYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQDGVSFGPLLALIQDKVFMDSWSQLK 140
Query: 139 DAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERL 198
+A++EGGIPFNRVHG H FEY +P FN+ ++ AMFNH+TI + +ILE Y+GF+++ R+
Sbjct: 141 NAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTIIVNKILESYKGFEHLTRV 200
Query: 199 VDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAILM 258
VDVGGG G TLS+ITSKYP I+A+NFDLPHV++ A ++ GVEH+GG+MF+SVP+GDAI M
Sbjct: 201 VDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAFPGVEHIGGDMFESVPKGDAIFM 260
Query: 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD 318
KWILH W DDHCL++LKNCYKA+P++GKVI++ ++PEIPE S+ + D++++T++
Sbjct: 261 KWILHDWSDDHCLKLLKNCYKALPEHGKVIIVEGVLPEIPEKGSTVKAICQTDLIMLTQN 320
Query: 319 GGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFF 356
GG+ERT+KEF +LAI AGF I + V ++ME F
Sbjct: 321 PGGKERTRKEFLDLAIGAGFAGIRYECYVSCYWVMEIF 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/344 (57%), Positives = 262/344 (76%), Gaps = 4/344 (1%)
Query: 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---KLSAPEIAAQLQAQNVKAPM 74
++E++ +AMQLA+ VLPM AIQLG+FEIIAKAG KLSA +IAA+L N P
Sbjct: 16 KDENFGYAMQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPDTPK 75
Query: 75 MLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESW 134
MLDR+LRLL SH+VL C V ER Y L PVS YFV N++GVSL FMAL + V ++SW
Sbjct: 76 MLDRILRLLASHQVLCCFVDGSERFYSLAPVSMYFVRNQNGVSLAPFMALIHENVILQSW 135
Query: 135 LGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQN 194
L+DAV+EGG+ F+RVHG+H FEY +P FN+ ++ AM+N +T+ +LE Y GF+N
Sbjct: 136 SQLKDAVLEGGVAFHRVHGVHAFEYNGLDPRFNQVFNTAMYNQTTVVNGNMLEKYNGFKN 195
Query: 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGD 254
+++LVD+GGG G T+ +TSKYPQIK +NFDLPHV++ AP+Y GVEHVGG+MF+SVP+GD
Sbjct: 196 LKQLVDIGGGLGHTMKAVTSKYPQIKGINFDLPHVIEHAPAYPGVEHVGGDMFESVPKGD 255
Query: 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL- 313
AI +KWILH W DDHCL++LKNCYKAIP++GKVIVM S++P + S +A+ S LDVL
Sbjct: 256 AIFLKWILHNWSDDHCLKLLKNCYKAIPEDGKVIVMESVLPITAKTSPAAKAISQLDVLM 315
Query: 314 LMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
+M+++ GG+ERT+ EF LA AAGF+ I F + VCN ++MEFFK
Sbjct: 316 MMSQNPGGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/348 (58%), Positives = 265/348 (76%), Gaps = 11/348 (3%)
Query: 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---KLSAPEIAAQLQAQNVKAPMMLD 77
S+ +AMQL L M+ Q+AI+LGVF+IIA+ G KLS+ IAA++ +N +APMM+D
Sbjct: 30 SFCYAMQLVGSSALSMSLQSAIKLGVFDIIAREGPDAKLSSSGIAAKIGTKNPEAPMMVD 89
Query: 78 RMLRLLVSHRVLECSV------SSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFM 131
R+LRLL SH VL CS S +R+Y L PVSKYFVS+++G SLG M L DKVFM
Sbjct: 90 RILRLLTSHSVLNCSAVAANGGSDFQRVYSLGPVSKYFVSDEEGGSLGPSMTLIQDKVFM 149
Query: 132 ESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEG 191
ESW L+DAV+EGGIPFNRVHGMH FEY +P FN+ ++ AMFNH+TI ++++L Y+G
Sbjct: 150 ESWSQLKDAVVEGGIPFNRVHGMHAFEYPGLDPRFNQVFNTAMFNHTTIVIKKLLHIYKG 209
Query: 192 FQ--NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS 249
+ N+ +LVDVGGG GVTL++ITS+Y IK +NFDLPHVV APSY GVEHVGG+MF S
Sbjct: 210 LEDKNLTQLVDVGGGLGVTLNLITSRYQHIKGINFDLPHVVNHAPSYPGVEHVGGDMFAS 269
Query: 250 VPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL 309
VP GDAI MKWILH W D+HCL++LKNCYKAIPDNGKVIV+ +++P +PE S++ + TS
Sbjct: 270 VPSGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDNGKVIVVEALLPAMPETSTATKTTSQ 329
Query: 310 LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
LDV++MT++ GG+ER+++EF LA AGF I + VCN ++MEFFK
Sbjct: 330 LDVVMMTQNPGGKERSEQEFMALATGAGFSGIRYECFVCNFWVMEFFK 377
|
Source: Prunus mume Species: Prunus mume Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548061|ref|XP_002515087.1| o-methyltransferase, putative [Ricinus communis] gi|223545567|gb|EEF47071.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/345 (57%), Positives = 260/345 (75%), Gaps = 4/345 (1%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---KLSAPEIAAQL-QAQNVKA 72
E +E++ +AMQLA+G LPM+ AAI+LGVFEIIAKAG KLSA EI A++ QN A
Sbjct: 15 EHDENFGYAMQLALGSALPMSLHAAIELGVFEIIAKAGPESKLSASEITAEIPDVQNPDA 74
Query: 73 PMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFME 132
+ LDR+LRLL SH VL CS++ ERLY L PVSKYFV N+DG+SLG FMAL DKVF++
Sbjct: 75 AITLDRVLRLLASHNVLGCSLNGLERLYSLNPVSKYFVPNQDGISLGPFMALIQDKVFLD 134
Query: 133 SWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGF 192
SW L+DAV+EGG PFN+ HG H F Y+ + FN ++ AMF+H+ + + +ILE Y+GF
Sbjct: 135 SWTKLKDAVLEGGSPFNKFHGTHCFGYSGLDSRFNHVFNTAMFHHTNLVITKILETYKGF 194
Query: 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPE 252
+ +++L+DVGGG G TL I SKYP +K +NFDLPHVV+ AP+ GVEHV G+MF+SVP+
Sbjct: 195 KQLKQLIDVGGGLGHTLKAIISKYPHLKGINFDLPHVVKYAPAIPGVEHVAGDMFESVPK 254
Query: 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDV 312
G+AI MKWILH W D+HCLR+LKNCY+A+PD+GKVIVM++++P +PE +A+ D+
Sbjct: 255 GEAIFMKWILHDWSDEHCLRLLKNCYEALPDDGKVIVMDAVLPVMPETGKAAKANFQTDL 314
Query: 313 LLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
++MT GG ERT+ EF +A AAGF+ I + C CN +IMEFFK
Sbjct: 315 VVMTVYEGGTERTEHEFLAMATAAGFRGIRYVCCACNFWIMEFFK 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147785075|emb|CAN75450.1| hypothetical protein VITISV_028012 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/339 (56%), Positives = 259/339 (76%), Gaps = 2/339 (0%)
Query: 20 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRM 79
E S+AMQL VLPM Q +I+LG+F+IIA G+ SA EIA++L +N +AP++LDRM
Sbjct: 21 EPCSYAMQLVTSSVLPMVMQTSIELGLFDIIANLGQASASEIASRLPTKNQEAPIILDRM 80
Query: 80 LRLLVSHRVLECSVSSG-ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLR 138
L LL +H VL CS G ER+Y LTPVSKYF SN+ GVS G +AL DKVFM+SW L+
Sbjct: 81 LYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQ-GVSFGPLLALIQDKVFMDSWSQLK 139
Query: 139 DAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERL 198
+A++EGGIPFNRVHG H FEY +P FN+ ++ AMFNH+T+ + +ILE Y+GF+++ R+
Sbjct: 140 NAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTVIVNKILESYKGFEHLTRV 199
Query: 199 VDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAILM 258
VDVGGG G TLS+ITSKYP I+A+NFDLPHV++ A +Y GV+H+GG+MF SVP+GDAI M
Sbjct: 200 VDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAYPGVKHIGGDMFVSVPKGDAIFM 259
Query: 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD 318
KWILH W DDHCL++LKNCYKA+P++GKVIV+ ++PEIPE S+ + D++++T++
Sbjct: 260 KWILHDWSDDHCLKLLKNCYKALPEHGKVIVVEGVLPEIPEKGSTVKAICQTDLIMLTQN 319
Query: 319 GGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
GG+ERT+KEF +L I AGF I + V ++ME FK
Sbjct: 320 PGGKERTRKEFLDLTIGAGFAGIRYECYVSCYWVMEIFK 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453636|ref|XP_002266899.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/339 (56%), Positives = 259/339 (76%), Gaps = 2/339 (0%)
Query: 20 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRM 79
E S+AMQL VLPM Q +I+LG+F+IIA G+ SA EIA++L +N +AP++LDRM
Sbjct: 21 EPCSYAMQLVTSSVLPMVMQTSIELGLFDIIANLGQASASEIASRLPTKNQEAPIILDRM 80
Query: 80 LRLLVSHRVLECSVSSG-ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLR 138
L LL +H VL CS G ER+Y LTPVSKYF SN+ GVS G +AL DKVFM+SW L+
Sbjct: 81 LYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQ-GVSFGPLLALIQDKVFMDSWSQLK 139
Query: 139 DAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERL 198
+A++EGGIPFNRVHG H FEY +P FN+ ++ AMFNH+T+ + +ILE Y+GF+++ R+
Sbjct: 140 NAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTVIVNKILESYKGFEHLTRV 199
Query: 199 VDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAILM 258
VDVGGG G TLS+ITSKYP I+A+NFDLPHV++ A +Y GV+H+GG+MF SVP+GDAI M
Sbjct: 200 VDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAYPGVKHIGGDMFVSVPKGDAIFM 259
Query: 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD 318
KWILH W DDHCL++LKNCYKA+P++GKVIV+ ++PEIPE S+ + D++++T++
Sbjct: 260 KWILHDWSDDHCLKLLKNCYKALPEHGKVIVVEGVLPEIPEKGSTVKAICQTDLIMLTQN 319
Query: 319 GGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
GG+ERT+KEF +L I AGF I + V ++ME FK
Sbjct: 320 PGGKERTRKEFLDLTIGAGFAGIRYECYVSCYWVMEIFK 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068181|ref|XP_002302677.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844403|gb|EEE81950.1| catechol o-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/336 (58%), Positives = 253/336 (75%), Gaps = 4/336 (1%)
Query: 26 MQLAMGVVLPMATQAAIQLGVFEIIAKAG---KLSAPEIAAQLQAQNVKAPMMLDRMLRL 82
MQLA+ VLPM AIQLG+FEIIAKAG KLSA +IAA+L N P MLDR+LRL
Sbjct: 1 MQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPDTPKMLDRILRL 60
Query: 83 LVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVM 142
L SH+VL C V ER Y L PVS YFV N++GVSL FMAL + V ++SW L+DAV+
Sbjct: 61 LASHQVLCCFVDGSERFYSLAPVSMYFVRNQNGVSLAPFMALIQENVVLQSWSQLKDAVL 120
Query: 143 EGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVG 202
EGG+ F+RVHG+H FEY +P FN+ ++ AM+N +T+ +LE Y GF+N+++LVD+G
Sbjct: 121 EGGVAFHRVHGVHGFEYNGLDPKFNQVFNTAMYNQTTVVNGFMLEKYNGFKNLKQLVDIG 180
Query: 203 GGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWIL 262
GG G T+ ITSKYP IK +NFDLPHV++ AP+Y GVEHVGG+MF+SVP+GDAI +KWIL
Sbjct: 181 GGLGHTMKAITSKYPHIKGINFDLPHVIEHAPAYPGVEHVGGDMFESVPKGDAIFLKWIL 240
Query: 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLM-TRDGGG 321
H W DDHCL++LKNCYKAIP +GKVIVM S++P + S +A+ S LDVL+M T++ GG
Sbjct: 241 HNWSDDHCLKLLKNCYKAIPGDGKVIVMESVLPITAKTSPAAKAISQLDVLMMITQNPGG 300
Query: 322 RERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
+ERT+ EF LA AAGF+ I F + VCN ++MEFFK
Sbjct: 301 KERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 336
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19550749|gb|AAL91506.1|AF484252_1 caffeic acid O-methyltransferase II [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/367 (53%), Positives = 266/367 (72%), Gaps = 13/367 (3%)
Query: 1 MRSLSEIQLPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG--KLSA 58
M S ++ Q+P Q+ EEE + ++AMQL VLP + IQL VFEI+AK+ KLSA
Sbjct: 1 MESSTKSQIPTQS---EEERNCTYAMQLLSSSVLPFVLHSTIQLEVFEILAKSNDTKLSA 57
Query: 59 PEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE-------RLYGLTPVSKYFV 110
+I +Q+ +AP ML+RML +L S+ + CS+ E R+YGL+ V K+FV
Sbjct: 58 SQIVSQIPNCTKPEAPTMLNRMLYVLASYSLFTCSIVEDEKNNGGQKRVYGLSQVGKFFV 117
Query: 111 SNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETY 170
N++G S+G +AL +KVF+ SW L+DAV+EGG+PF+RVHG+H FEY +P FN+ +
Sbjct: 118 KNENGASMGPLLALLQNKVFINSWFELKDAVLEGGVPFDRVHGVHAFEYPKSDPKFNDVF 177
Query: 171 HKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVV 230
+KAM NH+T+ M++ILE+Y+GF+N++ LVDVGGG GV L MITSKYP IK NFDLPHVV
Sbjct: 178 NKAMINHTTVVMKKILENYKGFENLKTLVDVGGGLGVNLKMITSKYPTIKGTNFDLPHVV 237
Query: 231 QDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290
Q APSY GVEHVGG+MF+SVPEGDAI MKWILH W D H L++LKNCYKA+PDNGKVIV+
Sbjct: 238 QHAPSYPGVEHVGGDMFESVPEGDAIFMKWILHDWSDSHNLKLLKNCYKALPDNGKVIVV 297
Query: 291 NSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNL 350
+I+P P++ ++ S D+++M ++ GG+ER+++EF LA AGFK +N CVCN
Sbjct: 298 EAILPVKPDIDTAVVGVSQCDLIMMAQNPGGKERSEEEFRALATEAGFKGVNLICCVCNF 357
Query: 351 YIMEFFK 357
++MEF K
Sbjct: 358 WVMEFCK 364
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | ||||||
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.991 | 0.975 | 0.508 | 5.3e-95 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.952 | 0.944 | 0.465 | 1.9e-83 | |
| UNIPROTKB|Q6ZD89 | 368 | ROMT-9 "Flavone 3'-O-methyltra | 0.952 | 0.923 | 0.438 | 6.8e-79 | |
| TAIR|locus:2204695 | 381 | AT1G77530 [Arabidopsis thalian | 0.974 | 0.913 | 0.434 | 8.1e-76 | |
| TAIR|locus:2204680 | 381 | AT1G77520 [Arabidopsis thalian | 0.974 | 0.913 | 0.428 | 7.3e-75 | |
| TAIR|locus:2038026 | 352 | AT1G33030 [Arabidopsis thalian | 0.949 | 0.963 | 0.435 | 7.5e-73 | |
| TAIR|locus:2164087 | 378 | AT5G53810 [Arabidopsis thalian | 0.949 | 0.896 | 0.421 | 7e-70 | |
| TAIR|locus:2034016 | 363 | AT1G51990 [Arabidopsis thalian | 0.949 | 0.933 | 0.417 | 1.4e-69 | |
| TAIR|locus:2199607 | 373 | IGMT1 "indole glucosinolate O- | 0.924 | 0.884 | 0.431 | 2.4e-69 | |
| TAIR|locus:2199587 | 373 | IGMT2 "indole glucosinolate O- | 0.924 | 0.884 | 0.431 | 3e-69 |
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
Identities = 185/364 (50%), Positives = 254/364 (69%)
Query: 1 MRSLSEIQL-PKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAP 59
M S +E QL P Q ++E+ AMQLA VLPMA ++A++L + EI+AK G +P
Sbjct: 1 MGSTAETQLTPVQ---VTDDEAALFAMQLASASVLPMALKSALELDLLEIMAKNGSPMSP 57
Query: 60 -EIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS--SG---ERLYGLTPVSKYFVSNK 113
EIA++L +N +AP+MLDR+LRLL S+ VL CS SG ER+YGL PV KY N+
Sbjct: 58 TEIASKLPTKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNE 117
Query: 114 DGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKA 173
DGVS+ + DKV MESW L+DA+++GGIPFN+ +GM FEY +P FN+ ++
Sbjct: 118 DGVSIAALCLMNQDKVLMESWYHLKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNG 177
Query: 174 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 233
M NHSTI M++ILE Y+GF+ + LVDVGGG G TL MI SKYP +K +NFDLPHV++DA
Sbjct: 178 MSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDA 237
Query: 234 PSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293
PS+ G+EHVGG+MF SVP+GDAI MKWI H W D+HC++ LKNCY+++P++GKVI+ I
Sbjct: 238 PSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECI 297
Query: 294 VPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIM 353
+PE P+ S S ++ +D +++ + GG+ERT+KEF LA A+GFK I + ++
Sbjct: 298 LPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFKGIKVVCDAFGVNLI 357
Query: 354 EFFK 357
E K
Sbjct: 358 ELLK 361
|
|
| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 162/348 (46%), Positives = 228/348 (65%)
Query: 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFE-IIAKAGKLSAP-EIAAQLQAQ-NVKAPM 74
+EE+ +A+QL +LPM + AI+LG+ E ++A GKL P E+AA+L + N A
Sbjct: 13 DEEACMYALQLVSSSILPMTLKNAIELGLLETLVAAGGKLLTPAEVAAKLPSTANPAAAD 72
Query: 75 MLDRMLRLLVSHRVLECSVSSGE-----RLYGLTPVSKYFVSNKDGVSLGHFMALPLDKV 129
M+DRMLRLL S+ V+ C++ G+ R Y PV K+ N+DGVS+ + DKV
Sbjct: 73 MVDRMLRLLASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPNEDGVSMAALALMNQDKV 132
Query: 130 FMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHY 189
MESW L+DAV++GGIPFN+ +GM FEY +P FN +++ M NHS I +++LE Y
Sbjct: 133 LMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEVY 192
Query: 190 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS 249
+GF+ + +VDVGGG G T+ IT+ YP IK +NFDLPHV+ +A + GV HVGG+MF
Sbjct: 193 KGFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEAQPFPGVTHVGGDMFQK 252
Query: 250 VPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL 309
VP GDAILMKWILH W D+HC +LKNCY A+P +GKV+++ I+P PE + A+
Sbjct: 253 VPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPVNPEATPKAQGVFH 312
Query: 310 LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
+D++++ + GGRER ++EF LA AGFK I N + +EF K
Sbjct: 313 VDMIMLAHNPGGRERYEREFEALAKGAGFKAIKTTYIYANAFAIEFTK 360
|
|
| UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 156/356 (43%), Positives = 228/356 (64%)
Query: 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA------GK---LSAPEIAAQLQAQ 68
+EE+ +A+QLA +LPM + AI+LG+ E + A GK L+ E+A +L ++
Sbjct: 13 DEEACMYALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGKAALLTPAEVADKLPSK 72
Query: 69 -NVKAPMMLDRMLRLLVSHRVLECSVSSG-----ERLYGLTPVSKYFVSNKDGVSLGHFM 122
N A M+DRMLRLL S+ V+ C + G R Y PV K+ N+DGVS+
Sbjct: 73 ANPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGVSMAALA 132
Query: 123 ALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAM 182
+ DKV MESW L+DAV++GGIPFN+ +GM FEY + FN +++ M NHS I
Sbjct: 133 LMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIIT 192
Query: 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHV 242
+++L+ Y GF +VDVGGG G T++ + S++P I+ +N+DLPHV+ +AP + GVEHV
Sbjct: 193 KKLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYDLPHVISEAPPFPGVEHV 252
Query: 243 GGNMFDSVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVS 301
GG+MF SVP G DAILMKWILH W D+HC R+LKNCY A+P++GKV+V+ ++PE + +
Sbjct: 253 GGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDAT 312
Query: 302 SSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
+ + +D++++ + GG+ER ++EF ELA AAGF N + +EF K
Sbjct: 313 AREQGVFHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKATYIYANAWAIEFTK 368
|
|
| TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 159/366 (43%), Positives = 229/366 (62%)
Query: 9 LPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK---LSAPEIAAQL 65
L K+ + +E+ A + V PM +AA++LGV + IA A LS EIA L
Sbjct: 17 LTKEEQEIDEKMVSLQAESIVNAVAFPMVLKAALELGVIDTIAAASNGTWLSPSEIAVSL 76
Query: 66 --QAQNVKAPMMLDRMLRLLVSHRVLEC----SVSSG-----ERLYGLTPVSKYFVSNKD 114
+ N +AP++LDRMLRLLVSH +L+C S +G ER+Y P+ KYF+ + D
Sbjct: 77 PNKPTNPEAPVLLDRMLRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSD 136
Query: 115 GV-SLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKA 173
G SL + L +V +++W L+D ++EG F+ H M +FEY S + F++ +H+A
Sbjct: 137 GSGSLSSLLLLLHSQVILKTWTNLKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRA 196
Query: 174 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 233
M ST+ M+++LE Y GF++V LVDVGGG G L +ITSKYP IK VNFDL V+ A
Sbjct: 197 MSESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQA 256
Query: 234 PSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293
P Y GV+HV G+MF VP+GDAI MKWILH W D+ C++ILKNC+K++P+ GKVI++ I
Sbjct: 257 PFYPGVKHVSGDMFIEVPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMI 316
Query: 294 VPEIPEVSSSARETSL-LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLY- 351
P P+ + + T L +D+L++T+ GG+ER+ +F LA A+GF C+ Y
Sbjct: 317 TPMEPKPNDFSCNTVLGMDLLMLTQCSGGKERSLSQFENLAFASGFLLCEII-CLSYSYS 375
Query: 352 IMEFFK 357
++EF K
Sbjct: 376 VIEFHK 381
|
|
| TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 157/366 (42%), Positives = 226/366 (61%)
Query: 9 LPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK---LSAPEIAAQL 65
L K+ + +E+ A + V PM +AA +LGV + IA AG LS EIA L
Sbjct: 17 LTKEEQEVDEKMVSLQAESIVNTVAFPMVLKAAFELGVIDTIAAAGNDTWLSPCEIACSL 76
Query: 66 QAQ--NVKAPMMLDRMLRLLVSHRVLECS-VSSGE--------RLYGLTPVSKYFVSNKD 114
+ N +AP++LDRML LLVSH +L+C + +GE R+Y PV KYF+ + D
Sbjct: 77 PTKPTNPEAPVLLDRMLSLLVSHSILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSD 136
Query: 115 GV-SLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKA 173
G SL L +VF ++W L+D ++EG FN HGM IFEY + + F E +++A
Sbjct: 137 GTGSLVPLFMLLHTQVFFKTWTNLKDVILEGRDAFNSAHGMKIFEYINSDQPFAELFNRA 196
Query: 174 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 233
M ST+ M+++L+ Y GF++V LVDVGGG G L ++TSKYP IK VNFDL V+ A
Sbjct: 197 MSEPSTMIMKKVLDVYRGFEDVNTLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQA 256
Query: 234 PSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293
P Y GVEHV G+MF VP+GDA+ MKWILH W D+ C++ILKNC+K++P+ GK+I++ +
Sbjct: 257 PFYPGVEHVSGDMFVEVPKGDAVFMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVEFV 316
Query: 294 VPEIPEVSSSARETSL-LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLY- 351
P+ P+ + T +D+L++T+ GG+ER+ +F LA A+GF C+ Y
Sbjct: 317 TPKEPKGGDLSSNTVFAMDLLMLTQCSGGKERSLSQFENLAFASGFLRCEII-CLAYSYS 375
Query: 352 IMEFFK 357
++EF K
Sbjct: 376 VIEFHK 381
|
|
| TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 153/351 (43%), Positives = 221/351 (62%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKA--PM 74
EE+ S+AM L+ VLPM + AI LG+F+I+A++G SA +I + L + K
Sbjct: 2 EEQNLSSYAMILSSSSVLPMVLKTAIDLGLFDILAESGPSSASQIFSLLSNETKKHHDSS 61
Query: 75 MLDRMLRLLVSHRVLECSVSS--GE--RLYGLTPVSKYFVSNKDGV-SLGHFMALPLDKV 129
+++R+LR L S+ +L CSVS+ GE +YGL PV+KYF N++G SL + L DKV
Sbjct: 62 LVNRILRFLASYSILTCSVSTEHGEPFAIYGLAPVAKYFTKNQNGGGSLAPMVNLFQDKV 121
Query: 130 FMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHY 189
+ W L+D+V+EGG+PFN HG E + F E + +M + + +E L++Y
Sbjct: 122 VTDMWYNLKDSVLEGGLPFNNTHGSSAVELVGSDSRFREVFQSSMKGFNEVFIEEFLKNY 181
Query: 190 EGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDLPHVVQDAPSYAGVEHVGGNMFD 248
GF V+ LVDVGGG G LS I SK+ I KA+NFDLP V+ + G+EHV G+MF
Sbjct: 182 NGFDGVKSLVDVGGGDGSLLSRIISKHTHIIKAINFDLPTVINTSLPSPGIEHVAGDMFT 241
Query: 249 SVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS 308
+ P+G+AI MKW+LH WDDDHC++IL NCY+++P NGKVIV++ ++PE P + R
Sbjct: 242 NTPKGEAIFMKWMLHSWDDDHCVKILSNCYQSLPSNGKVIVVDMVIPEFPGDTLLDRSLF 301
Query: 309 LLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN--FASCVCNLYIMEFFK 357
++ +M + G+ERTKKEF LA AGF ++ F S +C ++EF K
Sbjct: 302 QFELFMMNMNPSGKERTKKEFEILARLAGFSNVQVPFTS-LC-FSVLEFHK 350
|
|
| TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 151/358 (42%), Positives = 216/358 (60%)
Query: 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK----LSAPEIAAQLQAQ--NVK 71
EEE+ A +LA PM +AA++LGV + I G LS EIA +L + N++
Sbjct: 22 EEEARLLARRLANAAASPMVLKAALELGVIDTITTVGGGDLWLSPSEIALRLPTKPCNLE 81
Query: 72 APMMLDRMLRLLVSHRVLECSV---SSG-----ERLYGLTPVSKYFVSNKDGVSLGHFMA 123
AP +LDRMLR LVSH VL+C +G ER+Y PV KY ++ D VS G F +
Sbjct: 82 APALLDRMLRFLVSHSVLKCRTVIEENGQTGKVERVYAAEPVCKYLLNKSDDVS-GSFAS 140
Query: 124 L---PLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTI 180
L L VF+++W L D ++EG F+ HGM +FEY + F + +++AM ST+
Sbjct: 141 LFMLDLSDVFIKTWTHLEDVILEGRDAFSSAHGMKLFEYIQADERFGKVFNRAMLESSTM 200
Query: 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVE 240
E++L+ YEGF++V+ LVDVGGG G TL +ITSKYP + +NFDL V+ +A SY GV
Sbjct: 201 VTEKVLKFYEGFKDVKTLVDVGGGLGNTLGLITSKYPHLIGINFDLAPVLANAHSYPGVN 260
Query: 241 HVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP-EIPE 299
HV G+MF +P+GDAI MKWILH W D+ C+ ILKNC+K++ +NGK+I++ + P E
Sbjct: 261 HVAGDMFIKIPKGDAIFMKWILHDWTDEQCVAILKNCWKSLEENGKLIIVEMVTPVEAKS 320
Query: 300 VSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
+ +D+ ++T+ GG+ER EF LA A+GF V ++E +K
Sbjct: 321 GDICSNIVFGMDMTMLTQCSGGKERDLYEFENLAYASGFSRCAIVCAVYPFSVIEIYK 378
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| TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 146/350 (41%), Positives = 213/350 (60%)
Query: 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA---GKLSAP-EIAAQLQAQNVKAP 73
EEE A+QL +P + A +L +FEI+AKA G +P ++A+ +N AP
Sbjct: 12 EEEDMLLAIQLGGLNFVPYIVKTARELDLFEIMAKARPLGSYLSPVDLASMAAPKNPHAP 71
Query: 74 MMLDRMLRLLVSHRVLECSVSSGE-----RLYGLTPVSKYFVSNKDGVSLGHFMALPLDK 128
MM+DR+LR LV++ V C + E R YGL V K + ++DG S+ ++ K
Sbjct: 72 MMIDRLLRFLVAYSVCTCKLVKDEEGRESRAYGLGKVGKKLIKDEDGFSIAPYVLAGCTK 131
Query: 129 VFMESWLGLRDAVMEGGIP-FNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILE 187
W L +A+ EGG + R + IFEY N + ++++M NH++I M++ILE
Sbjct: 132 AKGGVWSYLTEAIQEGGASAWERANEALIFEYMKKNENLKKIFNESMTNHTSIVMKKILE 191
Query: 188 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF 247
+Y GF+ V VDVGG G L+ I SKYP IK +NFDLPH+V++AP GVEH+GG+MF
Sbjct: 192 NYIGFEGVSDFVDVGGSLGSNLAQILSKYPHIKGINFDLPHIVKEAPQIHGVEHIGGDMF 251
Query: 248 DSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP-EIPEVSSSARE 306
D +P G+ ILMKWILH W+D+ C+ ILKNC KA+P+ G++IV+ IVP E+ E + +
Sbjct: 252 DEIPRGEVILMKWILHDWNDEKCVEILKNCKKALPETGRIIVIEMIVPREVSETDLATKN 311
Query: 307 TSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFF 356
+ D+ +M+ GG+ERTKKEF +LA AGFK + +I+E +
Sbjct: 312 SLSADLTMMSLTSGGKERTKKEFEDLAKEAGFKLPKIIYGAYSYWIIELY 361
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| TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 150/348 (43%), Positives = 226/348 (64%)
Query: 25 AMQLAMGVVLPMATQAAIQLGVFEII-AKAGK----LSAPEIAAQLQA--QNVKAPMMLD 77
A++LA PM +AA++LGVF+ + A A + LS EIA++L +N +AP++LD
Sbjct: 29 AVRLANAAAFPMVLKAALELGVFDTLYAAASRTDSFLSPYEIASKLPTTPRNPEAPVLLD 88
Query: 78 RMLRLLVSHRVLECSVS---SGERLYGLTPVSKYFVSN--KDGVSLGHFMALPLDKVFME 132
RMLRLL S+ +++C + GER+Y P+ ++F+ + +D SL + + D VF+
Sbjct: 89 RMLRLLASYSMVKCGKALSGKGERVYRAEPICRFFLKDNIQDIGSLASQVIVNFDSVFLN 148
Query: 133 SWLGLRDAVMEGGIPFNRVHG-MHIFEYASGNPGFNETYHKAMFNHSTIAM-ERILEHYE 190
+W L+D V+EGG F R HG M +F+Y + F++ +++ F TIA+ ++ LE YE
Sbjct: 149 TWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---TIAVVKKALEVYE 205
Query: 191 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSV 250
GF+ V+ LVDVGGG G TL ++TSKYP IK +NFDL + APSY GVEHV G+MF V
Sbjct: 206 GFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDV 265
Query: 251 PEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS-SARETSL 309
P GDA+++K ILH W D+ C++ILKNC+K++P+NGKV+V+ + P+ E +A
Sbjct: 266 PTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDEAENGDINANIAFD 325
Query: 310 LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
+D+L+ T+ GG+ER++ EF LA A+GF H F + +I+EF K
Sbjct: 326 MDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373
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| TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 150/348 (43%), Positives = 225/348 (64%)
Query: 25 AMQLAMGVVLPMATQAAIQLGVFEII-AKAGK----LSAPEIAAQLQA--QNVKAPMMLD 77
A++LA PM +A+++LGVF+ + A+A + LS EIA++L +N AP++LD
Sbjct: 29 AVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPTTPRNPGAPVLLD 88
Query: 78 RMLRLLVSHRVLEC---SVSSGERLYGLTPVSKYFVSN--KDGVSLGHFMALPLDKVFME 132
RMLRLL S+ +++C SV GER+Y P+ ++F+ N +D SL + + D VF+
Sbjct: 89 RMLRLLASYSMVKCEKVSVGKGERVYRAEPICRFFLKNNIQDIGSLASQVIVNFDSVFLN 148
Query: 133 SWLGLRDAVMEGGIPFNRVHG-MHIFEYASGNPGFNETYHKAMFNHSTIAM-ERILEHYE 190
+W L+D V+EGG F R HG M +F+Y + F++ +++ F TIA+ ++ LE Y+
Sbjct: 149 TWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---TIAVVKKALEVYQ 205
Query: 191 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSV 250
GF+ V LVDVGGG G TL ++TSKYP IK +NFDL + APSY GVEHV G+MF V
Sbjct: 206 GFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDV 265
Query: 251 PEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS-SARETSL 309
P GDA+++K ILH W D+ C++ILKNC+K++P+NGKV+V+ + P+ E +A
Sbjct: 266 PTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDEAENGDINANIAFD 325
Query: 310 LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
+D+L+ T+ GG+ER++ EF LA A+ F H F + +I+EF K
Sbjct: 326 MDMLMFTQCSGGKERSRAEFEALAAASCFTHCKFVCQAYHCWIIEFCK 373
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q42653 | OMT2_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.5208 | 0.9327 | 0.9708 | N/A | no |
| Q9XGV9 | COMT2_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.5243 | 0.9551 | 0.9445 | N/A | no |
| Q43609 | COMT1_PRUDU | 2, ., 1, ., 1, ., 6, 8 | 0.5163 | 0.9915 | 0.9698 | N/A | no |
| Q6T1F6 | BMT_AMMMJ | 2, ., 1, ., 1, ., 6, 9 | 0.5085 | 0.9691 | 0.9774 | N/A | no |
| P46484 | COMT1_EUCGU | 2, ., 1, ., 1, ., 6, 8 | 0.5069 | 0.9831 | 0.9590 | N/A | no |
| Q00763 | COMT1_POPTM | 2, ., 1, ., 1, ., 6, 8 | 0.5013 | 0.9943 | 0.9726 | N/A | no |
| Q6ZD89 | OMT1_ORYSJ | 2, ., 1, ., 1, ., 7, 6 | 0.4342 | 0.9355 | 0.9076 | yes | no |
| Q43046 | COMT1_POPKI | 2, ., 1, ., 1, ., 6, 8 | 0.5081 | 0.9915 | 0.9698 | N/A | no |
| Q43047 | COMT3_POPKI | 2, ., 1, ., 1, ., 6, 8 | 0.5014 | 0.9495 | 0.9313 | N/A | no |
| A9X7L0 | ANMT_RUTGR | 2, ., 1, ., 1, ., 1, 1, 1 | 0.8299 | 0.9439 | 0.9258 | N/A | no |
| O23760 | COMT1_CLABR | 2, ., 1, ., 1, ., 6, 8 | 0.5270 | 0.9523 | 0.9189 | N/A | no |
| P59049 | OMT1_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.5208 | 0.9327 | 0.9708 | N/A | no |
| Q6T1F5 | COMT1_AMMMJ | 2, ., 1, ., 1, ., 6, 8 | 0.5041 | 1.0 | 0.9780 | N/A | no |
| Q9FK25 | OMT1_ARATH | 2, ., 1, ., 1, ., 7, 6 | 0.5082 | 0.9915 | 0.9752 | yes | no |
| Q9SWC2 | COMT1_EUCGL | 2, ., 1, ., 1, ., 6, 8 | 0.5177 | 0.8431 | 0.9616 | N/A | no |
| Q9XGW0 | COMT1_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.5180 | 0.9831 | 0.9722 | N/A | no |
| O04385 | IEMT_CLABR | 2, ., 1, ., 1, ., 1, 4, 6 | 0.5165 | 0.9831 | 0.9538 | N/A | no |
| Q8W013 | COMT1_CATRO | 2, ., 1, ., 1, ., 6, 8 | 0.5239 | 0.9719 | 0.9559 | N/A | no |
| Q8GU25 | COMT1_ROSCH | 2, ., 1, ., 1, ., 6, 8 | 0.5054 | 0.9915 | 0.9698 | N/A | no |
| Q8LL87 | COMT1_COFCA | 2, ., 1, ., 1, ., 6, 8 | 0.5287 | 0.9523 | 0.9714 | N/A | no |
| P28002 | COMT1_MEDSA | 2, ., 1, ., 1, ., 6, 8 | 0.5150 | 0.9943 | 0.9726 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | COMT4 | SubName- Full=Putative uncharacterized protein; (358 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 357 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 1e-107 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 6e-16 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 1e-12 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.004 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 314 bits (806), Expect = e-107
Identities = 115/239 (48%), Positives = 150/239 (62%), Gaps = 4/239 (1%)
Query: 96 GERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMH 155
G YGLTP SK V +D SL + + D +ESW L+DAV EGG PF R GM
Sbjct: 3 GGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFGMP 62
Query: 156 IFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK 215
FEY +P FN +++AM HS + M++ILE F + LVDVGGG G + I
Sbjct: 63 FFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRA 122
Query: 216 YPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILK 275
YP IK + FDLPHV+ DAPS VE VGG+ F+SVPE DAIL+KW+LH W D+ C++ILK
Sbjct: 123 YPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKILK 182
Query: 276 NCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL-LMTRDGGGRERTKKEFTELA 333
CY+A+P GKVIV+ ++PE P+ E LLD+ L+ GG+ERT+KE+ +L
Sbjct: 183 RCYEALPPGGKVIVVEMVLPEDPD-DDLETEVLLLDLNMLVLN--GGKERTEKEWRKLL 238
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This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 6e-16
Identities = 27/50 (54%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 36 MATQAAIQLGVFEIIAKAGK-LSAPEIAAQLQAQNVKAPMMLDRMLRLLV 84
M + AI+LG+ +IIAK GK LS E+A++L N +AP+MLDR+LRLL
Sbjct: 1 MVLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50
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This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 1e-12
Identities = 49/274 (17%), Positives = 110/274 (40%), Gaps = 38/274 (13%)
Query: 39 QAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER 98
+AAI+L +F +A P+ A L A P R+ LL + R + +
Sbjct: 8 KAAIELDLFSHMA-----EGPKDLATLAADTGSVP---PRLEMLLETLRQMRVINLEDGK 59
Query: 99 LYGLTPVSKYFVSNKD---GVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRV--HG 153
+ LT + Y S + + + ++GL + G F +
Sbjct: 60 -WSLTEFADYMFSPTPKEPNLHQTPVAKAMAF-LADDFYMGLSQ-AVRGQKNFKGQVPYP 116
Query: 154 MHIFEYASGNPGFNETYHKA---MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLS 210
E + + E H++ + ++ V++++DVGGG G +
Sbjct: 117 PVTRE----DNLYFEEIHRSNAKFAIQLLLEEAKL-------DGVKKMIDVGGGIGDISA 165
Query: 211 MITSKYPQIKAVNFDLPH---VVQDAPSYAG----VEHVGGNMF-DSVPEGDAILMKWIL 262
+ +P++ + +LP +V + + G + + +++ +S PE DA+L IL
Sbjct: 166 AMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRIL 225
Query: 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296
+ ++ + K + A+ G++++++ ++ +
Sbjct: 226 YSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259
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Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.004
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA------GVEHVGGNMFDS 249
R++D+G G G + + P + D+ P ++ A A VE + G+ +
Sbjct: 1 RVLDLGCGTGALALAL-ASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL 59
Query: 250 VPEG----DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290
PE D I+ LH +D R L+ + + G +++
Sbjct: 60 PPEADESFDVIISDPPLHHLVEDL-ARFLEEARRLLKPGGVLVLT 103
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There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.8 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.79 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.78 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.78 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.76 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.74 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.74 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.73 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.72 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.69 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.69 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.68 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.67 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.67 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.66 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.65 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.65 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.65 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.65 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.65 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.64 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.62 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.62 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.62 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.62 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.62 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.61 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.61 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.59 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.58 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.57 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.57 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.56 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.56 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.55 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.55 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.55 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.54 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.54 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.51 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.51 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.5 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.49 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.49 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.49 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.49 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.48 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.48 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.45 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.45 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.45 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.44 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.43 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.43 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.4 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.4 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.38 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.38 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.37 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.37 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.36 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.36 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.35 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.33 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.3 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.3 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.3 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.29 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.29 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.28 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.28 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.28 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.28 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.26 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.26 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.24 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.24 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.23 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.23 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.23 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.21 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.21 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.19 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.18 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.18 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.17 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.16 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.16 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.15 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.15 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.13 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.13 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.12 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.1 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.1 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.09 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.07 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.07 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.06 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.05 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.03 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.02 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.02 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.99 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.98 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.98 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.97 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.95 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.95 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.95 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.93 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.92 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.91 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.9 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.9 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.89 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.89 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.89 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.86 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.86 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.86 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.85 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.85 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.83 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.81 | |
| PLN02366 | 308 | spermidine synthase | 98.8 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.77 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.75 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.74 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.74 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.73 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.69 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.66 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.66 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.65 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.64 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.63 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.62 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.61 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.57 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.57 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.57 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.55 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.52 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.52 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.51 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.49 | |
| PLN02476 | 278 | O-methyltransferase | 98.46 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.46 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.43 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.4 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.39 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.39 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.38 | |
| PLN02823 | 336 | spermine synthase | 98.33 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.32 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.32 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.3 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.3 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.29 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.28 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.28 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.27 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.27 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.23 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.22 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.21 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.2 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.19 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.18 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.18 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.17 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.15 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.15 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.15 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.12 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.09 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.06 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.05 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.01 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.98 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.96 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.94 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.88 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.86 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.84 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.83 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.82 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.8 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.79 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.76 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.74 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.72 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.71 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.7 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.67 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.67 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.6 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.59 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.59 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.49 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.48 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.47 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.45 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.44 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.41 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.38 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.35 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.32 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.21 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.21 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.2 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.17 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.16 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 97.12 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.12 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.11 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.1 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 97.08 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.06 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.03 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 97.02 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.99 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.99 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 96.98 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 96.96 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 96.95 | |
| PHA00738 | 108 | putative HTH transcription regulator | 96.95 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.86 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 96.86 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.86 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.84 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.77 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 96.73 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 96.64 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.63 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.55 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.53 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 96.51 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.51 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.49 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.44 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.38 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 96.37 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 96.31 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.29 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.28 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.27 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.2 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.14 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.13 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.12 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.07 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 95.98 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 95.98 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 95.96 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 95.95 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 95.95 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 95.87 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.85 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 95.84 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 95.81 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.74 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 95.7 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 95.68 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 95.67 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 95.66 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 95.66 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 95.62 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 95.56 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 95.41 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.36 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 95.28 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.21 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 95.18 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 95.15 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 95.13 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 95.11 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.07 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.07 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.04 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.04 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.01 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 95.01 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 94.85 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 94.84 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 94.84 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 94.82 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 94.79 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 94.77 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 94.76 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 94.72 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 94.71 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 94.67 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 94.66 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 94.66 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 94.65 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 94.59 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 94.56 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 94.45 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 94.41 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 94.36 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 94.33 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 94.33 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 94.33 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 94.31 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 94.16 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 94.06 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 94.04 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 94.03 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.02 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.0 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 93.97 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 93.83 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 93.77 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 93.77 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 93.75 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 93.62 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.52 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.47 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 93.45 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.24 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 93.14 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 93.04 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 93.04 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 93.0 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 92.94 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 92.82 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 92.58 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 92.49 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 92.48 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 92.43 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 92.3 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 92.27 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 92.18 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 92.18 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 92.1 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 92.03 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 91.85 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 91.8 | |
| PRK13777 | 185 | transcriptional regulator Hpr; Provisional | 91.5 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 91.48 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 91.41 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 91.39 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.11 | |
| COG1846 | 126 | MarR Transcriptional regulators [Transcription] | 90.93 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 90.78 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 90.71 | |
| COG1378 | 247 | Predicted transcriptional regulators [Transcriptio | 90.57 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 90.51 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 90.41 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 90.28 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 90.02 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 90.01 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 89.98 | |
| PF07789 | 155 | DUF1627: Protein of unknown function (DUF1627); In | 89.39 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 89.28 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 89.21 | |
| COG1733 | 120 | Predicted transcriptional regulators [Transcriptio | 88.92 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 88.73 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 88.55 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 88.44 | |
| PF10007 | 92 | DUF2250: Uncharacterized protein conserved in arch | 88.41 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.23 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 88.22 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 88.2 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 88.07 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 87.84 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 87.45 | |
| PF03444 | 78 | HrcA_DNA-bdg: Winged helix-turn-helix transcriptio | 87.31 | |
| PRK05638 | 442 | threonine synthase; Validated | 87.14 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 86.84 | |
| COG2512 | 258 | Predicted membrane-associated trancriptional regul | 86.82 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 86.59 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 86.52 | |
| COG1522 | 154 | Lrp Transcriptional regulators [Transcription] | 86.36 | |
| PF04182 | 75 | B-block_TFIIIC: B-block binding subunit of TFIIIC; | 86.0 | |
| PF02002 | 105 | TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024 | 85.69 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 85.35 | |
| PRK13699 | 227 | putative methylase; Provisional | 84.62 | |
| PF12793 | 115 | SgrR_N: Sugar transport-related sRNA regulator N-t | 84.42 | |
| PF08221 | 62 | HTH_9: RNA polymerase III subunit RPC82 helix-turn | 84.3 | |
| PRK13509 | 251 | transcriptional repressor UlaR; Provisional | 84.15 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 83.86 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 83.58 | |
| TIGR00498 | 199 | lexA SOS regulatory protein LexA. LexA acts as a h | 83.39 | |
| PF14394 | 171 | DUF4423: Domain of unknown function (DUF4423) | 83.08 | |
| PF12324 | 77 | HTH_15: Helix-turn-helix domain of alkylmercury ly | 83.07 | |
| COG1497 | 260 | Predicted transcriptional regulator [Transcription | 83.01 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 83.0 | |
| PF13404 | 42 | HTH_AsnC-type: AsnC-type helix-turn-helix domain; | 82.86 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 82.77 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 82.7 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 82.61 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 82.6 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 82.52 | |
| COG0640 | 110 | ArsR Predicted transcriptional regulators [Transcr | 82.24 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 81.89 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 81.79 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 81.6 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 81.55 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 81.44 | |
| PRK09775 | 442 | putative DNA-binding transcriptional regulator; Pr | 81.3 | |
| PRK04214 | 412 | rbn ribonuclease BN/unknown domain fusion protein; | 81.22 | |
| PRK10906 | 252 | DNA-binding transcriptional repressor GlpR; Provis | 81.09 | |
| PF13384 | 50 | HTH_23: Homeodomain-like domain; PDB: 2X48_C. | 81.03 | |
| PF00392 | 64 | GntR: Bacterial regulatory proteins, gntR family; | 80.92 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 80.74 | |
| PF13545 | 76 | HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: | 80.62 | |
| COG3413 | 215 | Predicted DNA binding protein [General function pr | 80.58 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 80.56 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=323.70 Aligned_cols=337 Identities=46% Similarity=0.792 Sum_probs=300.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCc-CCCCCcchHHHHHHHHhcCcceeeeccCC
Q 018366 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLECSVSSG 96 (357)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 96 (357)
+....-.++++.+++..++++.+|+|+|+||.|.+.+ ...|+|..+.. ..+..+..++|+||.|+++++++......
T Consensus 3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~--~p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~ 80 (342)
T KOG3178|consen 3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANAG--SPSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGG 80 (342)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC--CHHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecc
Confidence 4456678999999999999999999999999999953 38888888773 25567889999999999999999865443
Q ss_pred CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhh
Q 018366 97 ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFN 176 (357)
Q Consensus 97 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (357)
. .|++++.++.++..++..++..++...+.+..++.|..+.++++.+..++...+|...++|...+......++++|+.
T Consensus 81 ~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~ 159 (342)
T KOG3178|consen 81 E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSF 159 (342)
T ss_pred e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHH
Confidence 3 899999999888666566888888877778889999999999999999999999988899998888888999999999
Q ss_pred cchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-CCceEEEcCCCCCCCCCCE
Q 018366 177 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-AGVEHVGGNMFDSVPEGDA 255 (357)
Q Consensus 177 ~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~D~~~~~p~~D~ 255 (357)
.+....+.+++.+.+++.....+|+|+|.|..+..++..||+++++.+|+|.+++.+... +.|+.+.+|++++.|.+|+
T Consensus 160 l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~da 239 (342)
T KOG3178|consen 160 LSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDA 239 (342)
T ss_pred HHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCe
Confidence 999998899999988888999999999999999999999999999999999999999887 8899999999999999999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCC-CCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEI-PEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
||+.++||||+|+++.++|+++++.|+|||+|+++|.+.++. ............+|..|+....+|++|+.+|++.++.
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~ 319 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLP 319 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcch
Confidence 999999999999999999999999999999999999988752 2222234456788888988877899999999999999
Q ss_pred HcCCceeEEeecCCceeEEEEeC
Q 018366 335 AAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 335 ~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
++||.+..+......+++||++|
T Consensus 320 ~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 320 EEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred hhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999986
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=292.57 Aligned_cols=290 Identities=19% Similarity=0.316 Sum_probs=212.4
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCC
Q 018366 34 LPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNK 113 (357)
Q Consensus 34 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~ 113 (357)
-.++|++|+++||||.|.+ ||.|++|||+++++ +++.++|||++|+++|++++ +++.|+||+.+..++.++
T Consensus 3 ~~~~l~aa~~Lglfd~L~~-gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~----~~~~y~~t~~~~~~l~~~ 73 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL----EDGKWSLTEFADYMFSPT 73 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc-CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEe----cCCcEecchhHHhhccCC
Confidence 4579999999999999998 59999999999999 99999999999999999996 258999999999777665
Q ss_pred CCC---chhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHh-hcchhhHHHHHhhc
Q 018366 114 DGV---SLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMF-NHSTIAMERILEHY 189 (357)
Q Consensus 114 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l 189 (357)
++. ++.++..+. .......|.+|.++++. +++|...++ +....++. ..|...|. .......+.+++.+
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~-~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 145 (306)
T TIGR02716 74 PKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG-QKNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAIQLLLEEA 145 (306)
T ss_pred ccchhhhcCchHHHH-HHHHHHHHHhHHHHhcC-CcccccccC-----CCCCCHHH-HHhHHHHHHhcchhHHHHHHHHc
Confidence 532 112222221 11233568999999984 444433221 11111222 23344443 33333445567766
Q ss_pred ccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCC-CCCCCCEEEeccc
Q 018366 190 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFD-SVPEGDAILMKWI 261 (357)
Q Consensus 190 ~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~D~i~~~~~ 261 (357)
+ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|++++.+|+++ ++|..|+|+++++
T Consensus 146 ~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~ 224 (306)
T TIGR02716 146 K-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRI 224 (306)
T ss_pred C-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhh
Confidence 6 77888999999999999999999999999999999988887654 2579999999987 6666799999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhh-hhhhhhhhcCCCccCCHHHHHHHHHHcCCce
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL-LDVLLMTRDGGGRERTKKEFTELAIAAGFKH 340 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 340 (357)
+|+|+++.+.++|++++++|+|||+++|.|.+.++.. .+....+... ....+.. . -...++.++|.++|+++||+.
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~~~e~~~ll~~aGf~~ 301 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFDYLSHYILGAGMPF-S-VLGFKEQARYKEILESLGYKD 301 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-CchhhHHHHHHHHccccc-c-cccCCCHHHHHHHHHHcCCCe
Confidence 9999998889999999999999999999998876532 2211111111 1111111 0 112345899999999999998
Q ss_pred eEEe
Q 018366 341 INFA 344 (357)
Q Consensus 341 ~~~~ 344 (357)
++++
T Consensus 302 v~~~ 305 (306)
T TIGR02716 302 VTMV 305 (306)
T ss_pred eEec
Confidence 8764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=284.44 Aligned_cols=237 Identities=31% Similarity=0.629 Sum_probs=205.5
Q ss_pred CCcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHh
Q 018366 96 GERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMF 175 (357)
Q Consensus 96 ~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 175 (357)
+++.|+||+.++.|+.+++..++..++.+...+.++..|.+|.+++++|.++|...+|.++|+++.++++....|+.+|.
T Consensus 2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 47899999999999988876677777777567889999999999999999999998998899999999999999999999
Q ss_pred hcchhhH-HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCCCCC
Q 018366 176 NHSTIAM-ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGD 254 (357)
Q Consensus 176 ~~~~~~~-~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D 254 (357)
..+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++++|+++++|.+|
T Consensus 82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D 160 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD 160 (241)
T ss_dssp HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence 9888777 67777777 888899999999999999999999999999999999999988888899999999999888899
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCC--CEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDN--GKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~Lkpg--G~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
+|+++++||+|+++++.++|++++++|+|| |+|+|+|.+.++....+........+|+.|+..+ +|++||.+||++|
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~l 239 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEAL 239 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHH
Confidence 999999999999999999999999999999 9999999999886554433222358899999987 7999999999999
Q ss_pred HH
Q 018366 333 AI 334 (357)
Q Consensus 333 l~ 334 (357)
|+
T Consensus 240 l~ 241 (241)
T PF00891_consen 240 LK 241 (241)
T ss_dssp HH
T ss_pred hC
Confidence 85
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=148.56 Aligned_cols=162 Identities=17% Similarity=0.300 Sum_probs=123.7
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG-- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-- 253 (357)
.++..+. ..++.+|||||||||..+..+++..+..+++++|+ +.|++.++++ ..|+|+.+|+.+ |+|++
T Consensus 42 ~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sF 120 (238)
T COG2226 42 ALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSF 120 (238)
T ss_pred HHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCcc
Confidence 4444443 44678999999999999999999999899999999 8999998864 238999999999 99986
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhh-hhhhc----C---------
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL-LMTRD----G--------- 319 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~--------- 319 (357)
|+|.++..|++++ +..++|++++|+|||||++++.|...+..+... .....+.+. .+-.. .
T Consensus 121 D~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL 195 (238)
T COG2226 121 DAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYL 195 (238)
T ss_pred CEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHH
Confidence 9999999999995 567999999999999999999999877643221 111111111 11110 0
Q ss_pred ---CCccCCHHHHHHHHHHcCCceeEEeecCCcee
Q 018366 320 ---GGRERTKKEFTELAIAAGFKHINFASCVCNLY 351 (357)
Q Consensus 320 ---~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 351 (357)
.-..++.+++..+++++||+.+.......+..
T Consensus 196 ~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~ 230 (238)
T COG2226 196 AESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIV 230 (238)
T ss_pred HHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeE
Confidence 12346899999999999999988666554443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-18 Score=149.34 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=114.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC---------CCceEEEcCCCC-CCCCC--CEEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFD-SVPEG--DAIL 257 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~p~~--D~i~ 257 (357)
..+..+|||+|||+|.++..+++.. |+.+++++|+ ++|++.++++ .+++++.+|+.+ +++++ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999998875 6679999999 8898877532 368999999987 77764 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh-hhhhh---hhhhcC-----------CCc
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS-LLDVL---LMTRDG-----------GGR 322 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~-----------~~~ 322 (357)
+..++|+++ +..++|++++++|||||++++.|...++.+.. ..... .+... ...... -..
T Consensus 151 ~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFT---TSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHH---HHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 999999995 45789999999999999999999876542110 11100 00000 000000 023
Q ss_pred cCCHHHHHHHHHHcCCceeEEeecCCcee
Q 018366 323 ERTKKEFTELAIAAGFKHINFASCVCNLY 351 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 351 (357)
.++.+++.++++++||+.++......+..
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 57999999999999999998877765544
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-19 Score=156.12 Aligned_cols=163 Identities=22% Similarity=0.374 Sum_probs=84.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~- 253 (357)
.+++.+. ..++.+|||+|||||..+..+++.. |+.+++++|+ ++|++.++++ .+|+++.+|+.+ |++++
T Consensus 38 ~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~s 116 (233)
T PF01209_consen 38 KLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNS 116 (233)
T ss_dssp HHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-
T ss_pred HHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCc
Confidence 3444443 4567799999999999999999875 6789999999 8999988752 479999999998 88875
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhh----hhhhcC---------
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL----LMTRDG--------- 319 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------- 319 (357)
|+|+++..+|+++| ..+.|++++|+|||||+++|+|...+..+.. ...+..++... ......
T Consensus 117 fD~v~~~fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~--~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~ 192 (233)
T PF01209_consen 117 FDAVTCSFGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLL--RALYKFYFKYILPLIGRLLSGDREAYRYLP 192 (233)
T ss_dssp EEEEEEES-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHH--HHHHHH------------------------
T ss_pred eeEEEHHhhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchh--hceeeeeecccccccccccccccccccccc
Confidence 99999999999954 5689999999999999999999987764210 00011111100 000000
Q ss_pred --CCccCCHHHHHHHHHHcCCceeEEeecCCcee
Q 018366 320 --GGRERTKKEFTELAIAAGFKHINFASCVCNLY 351 (357)
Q Consensus 320 --~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 351 (357)
-...++.+++.++++++||+.++..+...+..
T Consensus 193 ~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~ 226 (233)
T PF01209_consen 193 ESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIV 226 (233)
T ss_dssp ----------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 01345899999999999999999877765544
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=153.16 Aligned_cols=155 Identities=14% Similarity=0.208 Sum_probs=115.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhC--CCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCCCEEEeccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEGDAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~D~i~~~~~ 261 (357)
.+..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++. .+++++.+|+.+ +.+..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 355799999999999999999874 7899999999 8898887642 368999999987 5555699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhh--------------hhcCCCccCCHH
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLM--------------TRDGGGRERTKK 327 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~t~~ 327 (357)
+|++++++...+|++++++|||||++++.|.+..+++... ..........+. .........|.+
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~ 209 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN--HLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE 209 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH
Confidence 9999988889999999999999999999998765432211 000000000000 000012356999
Q ss_pred HHHHHHHHcCCceeEEeecCCc
Q 018366 328 EFTELAIAAGFKHINFASCVCN 349 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~~~~ 349 (357)
++.++++++||+.++.......
T Consensus 210 ~~~~~l~~aGF~~~~~~~~~~~ 231 (239)
T TIGR00740 210 THKARLKNVGFSHVELWFQCFN 231 (239)
T ss_pred HHHHHHHHcCCchHHHHHHHHh
Confidence 9999999999998776554433
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=146.68 Aligned_cols=155 Identities=17% Similarity=0.305 Sum_probs=119.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCC--C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~--D 254 (357)
..+++.++ +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ .+++.++.+|+.+ ++|++ |
T Consensus 42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 46777776 6778899999999999999998765 578999998 777777654 2579999999987 67654 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++..+++|++.++...+|++++++|||||++++.+........ .... ... ... .......+.+++.++|+
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~~---~~~-~~~--~~~~~~~~~~~~~~~l~ 191 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDEE---FKA-YIK--KRKYTLIPIQEYGDLIK 191 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHHH---HHH-HHH--hcCCCCCCHHHHHHHHH
Confidence 999999999998778899999999999999999999986543211 1111 111 111 11234568999999999
Q ss_pred HcCCceeEEeecC
Q 018366 335 AAGFKHINFASCV 347 (357)
Q Consensus 335 ~aGf~~~~~~~~~ 347 (357)
++||+.++.....
T Consensus 192 ~aGF~~v~~~d~~ 204 (263)
T PTZ00098 192 SCNFQNVVAKDIS 204 (263)
T ss_pred HCCCCeeeEEeCc
Confidence 9999999887654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-17 Score=142.38 Aligned_cols=168 Identities=18% Similarity=0.268 Sum_probs=120.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p~~ 253 (357)
+.++..++ ..+..+|||+|||+|.++..+++.. |+.+++++|+ +++++.+++ .++++++.+|+.+ +++.+
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 34555565 5667899999999999999999885 6779999999 788776654 2578999999987 55544
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhh-hhhhhh----------------hh
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARE-TSLLDV----------------LL 314 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~-~~~~~~----------------~~ 314 (357)
|+|++..++|++++ ..++|+++.+.|+|||++++.+...+... ..... ...+.. ..
T Consensus 114 ~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 99999999999854 56899999999999999999887543321 00000 000000 00
Q ss_pred hhhcCCCccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEEeC
Q 018366 315 MTRDGGGRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEFFK 357 (357)
Q Consensus 315 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 357 (357)
.... ....++.+++.++|+++||+++++.... +..+++..+|
T Consensus 189 ~~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 189 LQES-TRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHH-HHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0000 1234688999999999999999988877 4444665554
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-18 Score=149.39 Aligned_cols=153 Identities=14% Similarity=0.198 Sum_probs=113.1
Q ss_pred CCCceEEEEcCCcchHHHHHHh--hCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCCCEEEeccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITS--KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEGDAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~D~i~~~~~ 261 (357)
.+..+|||||||+|..+..+++ ..|+.+++++|+ +.|++.++++ .+++++.+|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 3567999999999999999988 468999999999 8899888652 379999999887 5555699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhh-----------h-hhhcCC-CccCCHHH
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL-----------L-MTRDGG-GRERTKKE 328 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~-~~~~t~~e 328 (357)
+|++++++...++++++++|||||.+++.|.+..++...... ....+.++. . .....+ -...|.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999988888899999999999999999999776543221110 000011100 0 000001 12348999
Q ss_pred HHHHHHHcCCceeEEeec
Q 018366 329 FTELAIAAGFKHINFASC 346 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~ 346 (357)
..++|++|||+.+..+..
T Consensus 214 ~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 214 HKARLHKAGFEHSELWFQ 231 (247)
T ss_pred HHHHHHHcCchhHHHHHH
Confidence 999999999998776543
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=142.28 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=110.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCC-C-CEEEec
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPE-G-DAILMK 259 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~-~-D~i~~~ 259 (357)
..+++.++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++.+|+.+..+. . |+|+++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEe
Confidence 46677776 56678999999999999999999999999999999 889988875 3689999998763333 3 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhh---hhhhhh-hhhhcCCCccCCHHHHHHHHHH
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARET---SLLDVL-LMTRDGGGRERTKKEFTELAIA 335 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~t~~e~~~ll~~ 335 (357)
.++||+++ ..+++++++++|||||++++........+......... .+.... ......+....+.+++.++|++
T Consensus 97 ~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 97 AALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred hhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 99999964 47899999999999999998643211110000000000 000000 0000012345689999999999
Q ss_pred cCCceeE
Q 018366 336 AGFKHIN 342 (357)
Q Consensus 336 aGf~~~~ 342 (357)
+||++..
T Consensus 175 aGf~v~~ 181 (255)
T PRK14103 175 AGCKVDA 181 (255)
T ss_pred CCCeEEE
Confidence 9998543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=146.04 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=109.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC--CEEEeccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG--DAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~--D~i~~~~~ 261 (357)
++..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++++ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456799999999999999999987 678999998 7777766541 469999999987 66654 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCC-C-chhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEV-S-SSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
+||+++ ..+++++++++|||||++++.+......... . ........++....... .....+.+++.++++++||.
T Consensus 196 ~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 999954 5689999999999999999988654321111 0 00011111111111111 12235899999999999999
Q ss_pred eeEEeecC
Q 018366 340 HINFASCV 347 (357)
Q Consensus 340 ~~~~~~~~ 347 (357)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-16 Score=130.38 Aligned_cols=168 Identities=20% Similarity=0.247 Sum_probs=120.8
Q ss_pred HHHHHHHhhcchhhHHH-HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC------CeEEEeec-hHHHHhCCCC---
Q 018366 168 ETYHKAMFNHSTIAMER-ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ------IKAVNFDL-PHVVQDAPSY--- 236 (357)
Q Consensus 168 ~~~~~~~~~~~~~~~~~-i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~--- 236 (357)
...+++|.--....-++ .+..+. .....++||++||||.++..+++..+. .+++++|+ |+|++.++++
T Consensus 74 D~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~ 152 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK 152 (296)
T ss_pred HHHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh
Confidence 44555555433322223 344444 445689999999999999999998877 78999999 9998877542
Q ss_pred ------CCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhh
Q 018366 237 ------AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARET 307 (357)
Q Consensus 237 ------~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~ 307 (357)
.++.++++|..+ |+|++ |.+++...+.+|+ ++.+.|++++|+|||||++.+.|+.--+++ ...++.
T Consensus 153 ~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~~---~l~~fy 227 (296)
T KOG1540|consen 153 RPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVENE---PLKWFY 227 (296)
T ss_pred cCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccccH---HHHHHH
Confidence 359999999999 99976 9999999999995 557999999999999999999998543321 111111
Q ss_pred hh--hhh---------------hhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 308 SL--LDV---------------LLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 308 ~~--~~~---------------~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
.. ++. ..+... =.+.++.+++..+.++|||+.+.
T Consensus 228 ~~ysf~VlpvlG~~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 228 DQYSFDVLPVLGEIIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhhhhchhhHhhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 11 111 011111 13456899999999999999887
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=138.92 Aligned_cols=138 Identities=24% Similarity=0.359 Sum_probs=108.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CEEEeccccccCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DAILMKWILHCWD 266 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~ 266 (357)
+..+|||||||+|.++..+++..+..+++++|. +++++.+++. .+++++.+|+.+ +++.+ |+|++..++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999888889999998 7888877653 578999999887 56553 9999999999996
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh-hhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS-LLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+. ..+|++++++|||||++++++...+.. +... ..+.+ ...++.+++.++|+++||+.+++..
T Consensus 193 d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~-------~~~r~~~~~~-------~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 193 DP--QRGIKEAYRVLKIGGKACLIGPVHPTF-------WLSRFFADVW-------MLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CH--HHHHHHHHHhcCCCcEEEEEEecCcch-------hHHHHhhhhh-------ccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 54 579999999999999999987654321 0111 11111 1235899999999999999998877
Q ss_pred cC
Q 018366 346 CV 347 (357)
Q Consensus 346 ~~ 347 (357)
..
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 54
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=131.89 Aligned_cols=168 Identities=14% Similarity=0.226 Sum_probs=119.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~ 253 (357)
.++..+. ..+..+|||+|||+|.++..+++.+| +.+++++|. +.+++.+++. .++.++.+|+.+ +.+.+
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 4455554 44567999999999999999999987 789999998 6676666542 468899999887 44433
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhh----hhhcCC-------
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLL----MTRDGG------- 320 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------- 320 (357)
|+|++.+++|+++ +...+|+++.+.|+|||++++++...+.... .......+...+ .....+
T Consensus 121 ~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 121 SFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 9999999999984 4678999999999999999999886544211 000000000000 000001
Q ss_pred -----CccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEEeC
Q 018366 321 -----GRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEFFK 357 (357)
Q Consensus 321 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 357 (357)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 224578999999999999999998865 4456777664
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-16 Score=134.03 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=127.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~ 253 (357)
.+.+++.+. ++++.+|||||||.|.++...++.+ +++++++++ +++.+.+++. .++++...|..+..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 456788787 8999999999999999999999999 899999998 6666666541 47889888887643336
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|-|++..+++|+..++...+++++++.|+|||++++.....+..+.. ...++...-.++||..++..++....
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999998877653221 12222333346799999999999999
Q ss_pred HHcCCceeEEeecC
Q 018366 334 IAAGFKHINFASCV 347 (357)
Q Consensus 334 ~~aGf~~~~~~~~~ 347 (357)
.++||++.+.....
T Consensus 212 ~~~~~~v~~~~~~~ 225 (283)
T COG2230 212 SEAGFVVLDVESLR 225 (283)
T ss_pred HhcCcEEehHhhhc
Confidence 99999988765543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=147.38 Aligned_cols=151 Identities=15% Similarity=0.258 Sum_probs=115.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC--
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-- 253 (357)
..+++.+. +++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++. .++++..+|+.+ ++|.+
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 45666665 5667899999999999999998876 679999999 7787776542 468999999987 56654
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|++..+++|++ +...+|++++++|||||++++.+.......... . .... .. ..+...++.+++.+++
T Consensus 334 D~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~---~~~~-~~--~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSP---E---FAEY-IK--QRGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcH---H---HHHH-HH--hcCCCCCCHHHHHHHH
Confidence 9999999999995 457999999999999999999988654321111 1 1111 11 1245678999999999
Q ss_pred HHcCCceeEEeec
Q 018366 334 IAAGFKHINFASC 346 (357)
Q Consensus 334 ~~aGf~~~~~~~~ 346 (357)
+++||+++.+...
T Consensus 403 ~~aGF~~i~~~d~ 415 (475)
T PLN02336 403 KDAGFDDVIAEDR 415 (475)
T ss_pred HHCCCeeeeeecc
Confidence 9999999877554
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-15 Score=129.03 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=119.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC----CCceEEEcCCCC-CCCCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~p~~--D 254 (357)
.++..+. ..+..+|||+|||+|..+..+++.+|+ .+++++|+ +.+++.+++. .++.++.+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 4444444 346689999999999999999999986 78999998 6776665542 468999999887 44443 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh---hcC------------
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT---RDG------------ 319 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------ 319 (357)
+|++..++|+.+ +...+|+++++.|+|||++++++...+.... ............+.. ...
T Consensus 109 ~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (223)
T TIGR01934 109 AVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES 184 (223)
T ss_pred EEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHH
Confidence 999999999984 5678999999999999999999876543210 000000000000000 000
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEeecCCc-eeEEEEeC
Q 018366 320 GGRERTKKEFTELAIAAGFKHINFASCVCN-LYIMEFFK 357 (357)
Q Consensus 320 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vie~~~ 357 (357)
.....+.++|.++|+++||+.+++.+...+ ..+++++|
T Consensus 185 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 012357899999999999999999888766 44776664
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=125.68 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=97.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCC-C-CEEEeccccccCCh
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPE-G-DAILMKWILHCWDD 267 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~-~-D~i~~~~~lh~~~~ 267 (357)
..+..+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... +.+. . |+|++..+|||++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS-
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc-
Confidence 34678999999999999999977644 8999998 777776 223333332223 2333 3 9999999999996
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
+...+|+++++.|||||++++.++..... ....... ........ .+...++.++|.++++++||++++
T Consensus 93 -d~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 -DPEEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFLK-WRYDRPYG-GHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp -HHHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHHH-CCGTCHHT-TTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred -cHHHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHHh-cCCcCccC-ceeccCCHHHHHHHHHHCCCEEEE
Confidence 57899999999999999999999865320 0001111 11111100 245678999999999999999875
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-15 Score=134.25 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=107.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC-------CCCCceEEEcCCCC-CCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~D~~~-~~p~~- 253 (357)
.++..+. ..+..+|||||||+|.++..++...+. .++++|. +.++.+++ ...++.+..+++.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 4555554 344579999999999999999888764 7899997 55554321 23568888888766 33334
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|++..+|||++ +...+|++++++|||||.|++.+...+......... ......|.. ....+|.+++.++|
T Consensus 190 D~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p---~~ry~k~~n---v~flpS~~~L~~~L 261 (314)
T TIGR00452 190 DTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP---KDRYAKMKN---VYFIPSVSALKNWL 261 (314)
T ss_pred CEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCc---hHHHHhccc---cccCCCHHHHHHHH
Confidence 9999999999995 457899999999999999999877665422111000 000001110 12346899999999
Q ss_pred HHcCCceeEEeec
Q 018366 334 IAAGFKHINFASC 346 (357)
Q Consensus 334 ~~aGf~~~~~~~~ 346 (357)
+++||+.+++...
T Consensus 262 ~~aGF~~V~i~~~ 274 (314)
T TIGR00452 262 EKVGFENFRILDV 274 (314)
T ss_pred HHCCCeEEEEEec
Confidence 9999999987654
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=137.35 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=107.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC-------CCCCceEEEcCCCC-CCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~D~~~-~~p~~- 253 (357)
.++..++.+ ...+|||||||+|.++..++...+. .++++|. +.++..++ ...++.++.+|+.+ +.+..
T Consensus 113 ~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 345555423 4579999999999999999998765 5999997 44443321 13479999999877 55444
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|++..++||.. +...+|+++++.|+|||++++.+...+.+....... ...+ ..|.. ....+|.+++.+++
T Consensus 191 D~V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p-~~~y--~~~~~---~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP-GDRY--AKMRN---VYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc-hhHH--hcCcc---ceeCCCHHHHHHHH
Confidence 9999999999985 456899999999999999998766555432211100 0000 00110 11246899999999
Q ss_pred HHcCCceeEEeec
Q 018366 334 IAAGFKHINFASC 346 (357)
Q Consensus 334 ~~aGf~~~~~~~~ 346 (357)
+++||+.+++...
T Consensus 263 ~~aGF~~i~~~~~ 275 (322)
T PRK15068 263 ERAGFKDVRIVDV 275 (322)
T ss_pred HHcCCceEEEEeC
Confidence 9999999988754
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-15 Score=126.59 Aligned_cols=141 Identities=11% Similarity=0.171 Sum_probs=106.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~- 253 (357)
+.+++.++ ..+..+|||+|||+|..+..+++. +.+++++|+ +.+++.+++. .++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 35566665 445689999999999999999986 468999998 7787776542 458888899876 45544
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|++..++|++++++...++++++++|||||++++++....++...+. . -...++.+++.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTV---------------G-FPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCC---------------C-CCCccCHHHHHHHh
Confidence 9999999999998888999999999999999998877654333210000 0 01235788999998
Q ss_pred HHcCCceeEEe
Q 018366 334 IAAGFKHINFA 344 (357)
Q Consensus 334 ~~aGf~~~~~~ 344 (357)
+ ||+++...
T Consensus 161 ~--~~~~~~~~ 169 (197)
T PRK11207 161 E--GWEMVKYN 169 (197)
T ss_pred C--CCeEEEee
Confidence 7 89987763
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=133.73 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=111.3
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~ 253 (357)
...+++.+. ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+..+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 356788777 8888999999999999999999998 789999998 555555432 257999999987622234
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh-hhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS-LLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|.|++..++.|++.++...+++++.++|||||++++...+....+. ..... ..++...-.++|+..++..++...
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~----~~~~~~~~~~i~kyiFPgg~lps~~~~~~~ 204 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPY----HAERRSSSDFIRKYIFPGGYLPSLSEILRA 204 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHH----HHCTTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccc----hhhcCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence 9999999999999899999999999999999999998777654210 00000 012233333579999999999999
Q ss_pred HHHcCCceeEEeecC
Q 018366 333 AIAAGFKHINFASCV 347 (357)
Q Consensus 333 l~~aGf~~~~~~~~~ 347 (357)
++++||++..+...+
T Consensus 205 ~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 205 AEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHTT-EEEEEEE-H
T ss_pred HhcCCEEEEEEEEcC
Confidence 999999988876653
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=131.19 Aligned_cols=136 Identities=15% Similarity=0.316 Sum_probs=106.4
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-CCCCC-CEEEeccccccC
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-SVPEG-DAILMKWILHCW 265 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~ 265 (357)
.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++..|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999899999998 777766654 2468999999866 45554 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
++ ...+|++++++|||||++++.+...+...... . + .......+.++|.++++++||++++...
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~------~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIE--H------E------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccCcccc--c------c------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 54 57999999999999999999887543210000 0 0 0022246899999999999999998877
Q ss_pred cC
Q 018366 346 CV 347 (357)
Q Consensus 346 ~~ 347 (357)
..
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 54
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=129.67 Aligned_cols=156 Identities=16% Similarity=0.223 Sum_probs=108.9
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCCCCC-CC-CEEE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFDSVP-EG-DAIL 257 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~p-~~-D~i~ 257 (357)
...++..++ .++..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++.++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 346777776 66778999999999999999999999999999999 8888888764 678999999876333 23 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh--hhhhhhhhh-cCCCccCCHHHHHHHHH
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS--LLDVLLMTR-DGGGRERTKKEFTELAI 334 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~t~~e~~~ll~ 334 (357)
++.++|+.++ ...+|++++++|||||++++.-......+.......... .+...+... .......+.+++.+++.
T Consensus 99 ~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 99 ANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 9999999854 468999999999999999885321101000000000000 000000000 00134467889999999
Q ss_pred HcCCce
Q 018366 335 AAGFKH 340 (357)
Q Consensus 335 ~aGf~~ 340 (357)
++|+.+
T Consensus 177 ~~g~~v 182 (258)
T PRK01683 177 PAACRV 182 (258)
T ss_pred hCCCce
Confidence 999874
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=123.04 Aligned_cols=172 Identities=14% Similarity=0.189 Sum_probs=126.1
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCCCCCC--CCEEE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFDSVPE--GDAIL 257 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~p~--~D~i~ 257 (357)
+.+++..++ .....+|+|+|||+|..+..|++++|+..++++|. ++|++.|+.. ++++|..+|+.+..|+ .|+++
T Consensus 19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 357888888 77889999999999999999999999999999998 8999998764 8999999999986664 39999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhc---CCCccCCHHHHHHHHH
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD---GGGRERTKKEFTELAI 334 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~e~~~ll~ 334 (357)
.+.+||+.+|. .++|.++...|.|||.|.+.-+-.-+.+.............+...... ......+...+-++|.
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa 175 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLA 175 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhC
Confidence 99999999654 699999999999999999976543332221111111100001111000 1334568999999999
Q ss_pred HcCCceeEEeec------CCceeEEEEeC
Q 018366 335 AAGFKHINFASC------VCNLYIMEFFK 357 (357)
Q Consensus 335 ~aGf~~~~~~~~------~~~~~vie~~~ 357 (357)
..+=+ ++++.+ .+...|+|++|
T Consensus 176 ~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 176 PLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred cccce-eeeeeeeccccCCCccchhhhee
Confidence 88744 555443 46677887765
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-15 Score=130.86 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=106.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC--CCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD--SVPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~p~ 252 (357)
..+++.++ +++.+|||+|||+|.++..+++. +.+++++|+ +++++.+++. ++++++.+|+.+ +.+.
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 34555554 34579999999999999999987 467899998 8888877652 468899999866 2333
Q ss_pred -C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCc-hhhhhhh-hhhhh---hhhcCCCccCC
Q 018366 253 -G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS-SARETSL-LDVLL---MTRDGGGRERT 325 (357)
Q Consensus 253 -~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~-~~~~~~~-~~~~~---~~~~~~~~~~t 325 (357)
. |+|++..++|++++ ...+|+++.++|||||+++++............ ...+... ..+.. .... -....+
T Consensus 111 ~~fD~V~~~~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~ 187 (255)
T PRK11036 111 TPVDLILFHAVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLD 187 (255)
T ss_pred CCCCEEEehhHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCC
Confidence 3 99999999999954 468999999999999999987553221000000 0000000 00000 0000 122357
Q ss_pred HHHHHHHHHHcCCceeEEeec
Q 018366 326 KKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~ 346 (357)
++++.++|+++||+++...-.
T Consensus 188 ~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 188 PEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHHHHCCCeEeeeeeE
Confidence 999999999999999876544
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=127.32 Aligned_cols=156 Identities=22% Similarity=0.288 Sum_probs=110.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-- 253 (357)
.+++.+. +.+..+|||+|||+|.++..+++.+ |+.+++++|. +.+++.+++. .++.+..+|+.+ +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 4555555 6677899999999999999999988 7789999998 6766666442 568899999876 55543
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCC-chhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVS-SSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+|++.++++++++ ...+++++.++|||||++++.+.......... ...........+.. ......+..++.++
T Consensus 89 D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD---HFADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 99999999999954 57899999999999999999886432210000 01111111111111 12333467789999
Q ss_pred HHHcCCceeEEee
Q 018366 333 AIAAGFKHINFAS 345 (357)
Q Consensus 333 l~~aGf~~~~~~~ 345 (357)
++++||+.+++..
T Consensus 164 l~~aGf~~~~~~~ 176 (241)
T PRK08317 164 FREAGLTDIEVEP 176 (241)
T ss_pred HHHcCCCceeEEE
Confidence 9999999876644
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=137.69 Aligned_cols=144 Identities=15% Similarity=0.059 Sum_probs=102.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC--CEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG--DAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~--D~i~~~~~l 262 (357)
+..+|||||||+|.++..+++ ++.+++++|. +++++.++.. .+++++.+|+.+ +.+.+ |+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 446999999999999998886 3678999998 7888877642 368899999876 44433 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC----CccCCHHHHHHHHHHcCC
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG----GRERTKKEFTELAIAAGF 338 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~t~~e~~~ll~~aGf 338 (357)
||+++ ...+|++++++|||||.+++.+...... ..................+ .+.++++++.++|+++||
T Consensus 209 eHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVAN--PAEFCKSLSALTIPNGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 99965 4689999999999999999987532110 0000000000001000111 246799999999999999
Q ss_pred ceeEEee
Q 018366 339 KHINFAS 345 (357)
Q Consensus 339 ~~~~~~~ 345 (357)
+++++..
T Consensus 283 ~i~~~~G 289 (322)
T PLN02396 283 DVKEMAG 289 (322)
T ss_pred eEEEEee
Confidence 9988743
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=130.10 Aligned_cols=145 Identities=19% Similarity=0.326 Sum_probs=108.6
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--CEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG--DAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~--D~i~~~~ 260 (357)
+.+..+|||+|||+|..+..+++.. ++.+++++|+ +.+++.+++. +++++..+|+.+ +++++ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4567899999999999888777654 5668999998 8888887652 578999999877 66553 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCce
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKH 340 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 340 (357)
++|++++ ..+++++++++|||||++++.+...... .+ ... ..+..+.... .+...+..++.++|+++||..
T Consensus 155 v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~--~~~--~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGE--LP--EEI--RNDAELYAGC-VAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCC--CC--HHH--HHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence 9999854 4689999999999999999998765431 11 111 1112222111 344568999999999999999
Q ss_pred eEEee
Q 018366 341 INFAS 345 (357)
Q Consensus 341 ~~~~~ 345 (357)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87744
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=116.66 Aligned_cols=97 Identities=23% Similarity=0.399 Sum_probs=81.9
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCC-CC-CCCCC-CEEEecc-cc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNM-FD-SVPEG-DAILMKW-IL 262 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~-~~-~~p~~-D~i~~~~-~l 262 (357)
..+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++++++.+|+ .. ..+.. |+|++.. ++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 56999999999999999999999999999999 888877764 26899999999 33 33344 9999999 66
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 263 HCWDD-DHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 263 h~~~~-~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 65543 577899999999999999999865
|
... |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.2e-15 Score=141.18 Aligned_cols=141 Identities=19% Similarity=0.353 Sum_probs=106.5
Q ss_pred ChhhhcccCcchHHHHHHHHhhcchh--hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHH
Q 018366 155 HIFEYASGNPGFNETYHKAMFNHSTI--AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ 231 (357)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 231 (357)
.+|+++..+++...+|...|...... ........++ +.+..+|||||||+|..+..+++.+|+.+++++|+ +.+++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 56788888777777776655442221 1111122233 45678999999999999999999999999999999 77888
Q ss_pred hCCCC-----CCceEEEcCCCC-C--CCCC--CEEEeccccccC-----------ChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 232 DAPSY-----AGVEHVGGNMFD-S--VPEG--DAILMKWILHCW-----------DDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 232 ~a~~~-----~~v~~~~~D~~~-~--~p~~--D~i~~~~~lh~~-----------~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
.+++. .+++++.+|..+ + ++.+ |+|+++.++|+| ++++..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 77642 357788899876 3 4443 999999999976 3467889999999999999999999
Q ss_pred eeccCC
Q 018366 291 NSIVPE 296 (357)
Q Consensus 291 e~~~~~ 296 (357)
|.+.++
T Consensus 537 D~v~~E 542 (677)
T PRK06922 537 DGIMTE 542 (677)
T ss_pred eCccCC
Confidence 876554
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-15 Score=123.46 Aligned_cols=136 Identities=21% Similarity=0.328 Sum_probs=99.4
Q ss_pred CCceEEEEcCCcchHHHHHH-hhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-C--CCCC-CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-S--VPEG-DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~p~~-D~i~~~~~ 261 (357)
+..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++ .++++|..+|+.+ + ++.. |+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56799999999999999999 5678899999999 889988876 2579999999998 4 3334 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh--cCCCccCCHHHHHHHHHHcC
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR--DGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aG 337 (357)
+|+++ +...+|+++.+.|+|||.+++.+......- .........+.+... ...+. +.++|..+|++||
T Consensus 83 l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFP--DPEKVLKNIIRLLKPGGILIISDPNHNDEL----PEQLEELMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTS--HHHHHHHHHHHHEEEEEEEEEEEEEHSHHH----HHHHHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred hhhcc--CHHHHHHHHHHHcCCCcEEEEEECChHHHH----HHHHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99995 446899999999999999999988732210 011111111111111 11112 7889999999998
|
... |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=117.66 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=120.3
Q ss_pred HHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCc
Q 018366 167 NETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGV 239 (357)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v 239 (357)
...|++.|.++.......+-. +-+.+....||+||||||..-...- --|..+++.+|. +.|.+.+.++ ..+
T Consensus 50 t~~yne~~~~ykrelFs~i~~-~~gk~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 50 TSIYNEIADSYKRELFSGIYY-FLGKSGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-HhcccCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 345666666554433333332 3324566789999999998765432 236778999997 7777766442 456
Q ss_pred e-EEEcCCCC-C-CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhh
Q 018366 240 E-HVGGNMFD-S-VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLL 314 (357)
Q Consensus 240 ~-~~~~D~~~-~-~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 314 (357)
. |+.++..+ + ++++ |+|++..+|+.. ++..+.|++++++|+|||+++++|.+..+...- ...++...+-..
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~--n~i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW--NRILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHH--HHHHHHHhchhh
Confidence 6 78888777 3 5555 999999999988 778899999999999999999999987664211 111122222222
Q ss_pred hhhcCCCccCCHHHHHHHHHHcCCceeEEeecCCceeEE
Q 018366 315 MTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIM 353 (357)
Q Consensus 315 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi 353 (357)
...+ .|...|.+.| +.|++|-|+..+......+..+.
T Consensus 204 ~~~~-dGC~ltrd~~-e~Leda~f~~~~~kr~~~~ttw~ 240 (252)
T KOG4300|consen 204 HLES-DGCVLTRDTG-ELLEDAEFSIDSCKRFNFGTTWV 240 (252)
T ss_pred heec-cceEEehhHH-HHhhhcccccchhhcccCCceEE
Confidence 2222 6777787777 45688899999887776554433
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-14 Score=119.33 Aligned_cols=141 Identities=10% Similarity=0.103 Sum_probs=103.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D 254 (357)
..+++.++ ..++.+|||+|||+|..+..+++. +.+++++|+ +.+++.+++. -.+.+...|+.. +.+.. |
T Consensus 20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 35556555 445679999999999999999986 468899998 7788766432 136677777755 44444 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|+++.++|++++++...++++++++|||||++++++....+..... . +.....+++++.++|.
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~--~--------------~~~~~~~~~el~~~f~ 160 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH--M--------------PFSFTFKEDELRQYYA 160 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC--C--------------CcCccCCHHHHHHHhC
Confidence 99999999999888889999999999999999888765432210000 0 0122458999999986
Q ss_pred HcCCceeEEe
Q 018366 335 AAGFKHINFA 344 (357)
Q Consensus 335 ~aGf~~~~~~ 344 (357)
+|+++...
T Consensus 161 --~~~~~~~~ 168 (195)
T TIGR00477 161 --DWELLKYN 168 (195)
T ss_pred --CCeEEEee
Confidence 58887765
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=122.05 Aligned_cols=147 Identities=13% Similarity=0.172 Sum_probs=105.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC--CEE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG--DAI 256 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~i 256 (357)
...+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++. ..+.++.+|+.+ +++++ |+|
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 445666666 345679999999999999988764 468899998 8898888764 346788999987 66654 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
+++.++|+.+ +...+|++++++|+|||++++.......- ......+...... .......+.+++.+++...
T Consensus 108 ~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~-----~el~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~ 178 (251)
T PRK10258 108 WSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGSL-----PELHQAWQAVDER--PHANRFLPPDAIEQALNGW 178 (251)
T ss_pred EECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCch-----HHHHHHHHHhccC--CccccCCCHHHHHHHHHhC
Confidence 9999999874 45799999999999999999987643321 0000011000000 1134457899999999988
Q ss_pred CCce
Q 018366 337 GFKH 340 (357)
Q Consensus 337 Gf~~ 340 (357)
|+..
T Consensus 179 ~~~~ 182 (251)
T PRK10258 179 RYQH 182 (251)
T ss_pred Ccee
Confidence 8764
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=8e-14 Score=123.88 Aligned_cols=100 Identities=20% Similarity=0.311 Sum_probs=82.7
Q ss_pred CCCceEEEEcCCcch----HHHHHHhhCC-----CCeEEEeec-hHHHHhCCCC--------------------------
Q 018366 193 QNVERLVDVGGGFGV----TLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY-------------------------- 236 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 236 (357)
.+..+|+|+|||+|. +++.+.+..+ +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 355799999999996 5666666654 578999999 8889887752
Q ss_pred -------CCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 237 -------AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 237 -------~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.+|.|..+|+.+ +.+.+ |+|+|.++||++++++..+++++++++|+|||+|++-..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999998 34343 999999999999988889999999999999999999654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=119.25 Aligned_cols=153 Identities=13% Similarity=0.114 Sum_probs=105.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDH 269 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~ 269 (357)
+..+|||||||||.++..+++.+ +.+++++|+ ++|++.+++. ..++.+|+.+ |++++ |+|++..++|+++ +
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~--d 125 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASD--N 125 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccC--C
Confidence 35799999999999999999887 568999999 8999998754 3567788887 77665 9999999999994 4
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhh--hh-hhcCC------------CccCCHHHHHHHHH
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL--LM-TRDGG------------GRERTKKEFTELAI 334 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~------------~~~~t~~e~~~ll~ 334 (357)
..++|++++++|||. +.+++...++... ....+..++... .. ....+ ...++.+++.++++
T Consensus 126 ~~~~l~e~~RvLkp~--~~ile~~~p~~~~--~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~ 201 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ--VGFIAMGKPDNVI--KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFE 201 (226)
T ss_pred HHHHHHHHHHHhcCc--eEEEEeCCCCcHH--HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 578999999999993 4455654443210 000011111100 00 00101 13458999999999
Q ss_pred HcCCceeEEeecCCcee-EEEEe
Q 018366 335 AAGFKHINFASCVCNLY-IMEFF 356 (357)
Q Consensus 335 ~aGf~~~~~~~~~~~~~-vie~~ 356 (357)
++| ..++......+.. +..++
T Consensus 202 ~~~-~~~~~~~~~~G~~~~~~~~ 223 (226)
T PRK05785 202 KYA-DIKVYEERGLGLVYFVVGS 223 (226)
T ss_pred HHh-CceEEEEccccEEEEEEEe
Confidence 984 6677777765544 44444
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.3e-14 Score=120.64 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=106.7
Q ss_pred HHHHhhccc-CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC
Q 018366 183 ERILEHYEG-FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~ 253 (357)
..+++.++. ..+..+|||+|||+|.++..+++. +.+++++|+ ++++..++++ .++.+..+|+.+..+..
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~f 120 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEF 120 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCc
Confidence 344444441 335679999999999999999876 457889998 8888877652 37899999987633233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh--hcCCCccCCHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT--RDGGGRERTKKEFTE 331 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~e~~~ 331 (357)
|+|++..+++|+++++...+++++.+.+++++.+.+.. .. . .......+...+.. .......++.+++.+
T Consensus 121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
T TIGR02021 121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP----KT---A-WLAFLKMIGELFPGSSRATSAYLHPMTDLER 192 (219)
T ss_pred CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC----Cc---h-HHHHHHHHHhhCcCcccccceEEecHHHHHH
Confidence 99999999999988888899999999998765554421 10 0 00000011100000 001123468999999
Q ss_pred HHHHcCCceeEEeecCCc
Q 018366 332 LAIAAGFKHINFASCVCN 349 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~ 349 (357)
+++++||+++.......+
T Consensus 193 ~l~~~Gf~v~~~~~~~~~ 210 (219)
T TIGR02021 193 ALGELGWKIVREGLVSTG 210 (219)
T ss_pred HHHHcCceeeeeeccccc
Confidence 999999999988765543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-13 Score=118.40 Aligned_cols=144 Identities=18% Similarity=0.153 Sum_probs=101.4
Q ss_pred CCCceEEEEcCCcchHHHHHHhh----CCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCC-C-CEEEeccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPE-G-DAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~-~-D~i~~~~~ 261 (357)
++..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+++. .++++...+... +.+. . |+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999998888753 46679999999 8899888764 456666665433 3333 3 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh-----cCC-----CccCCHHHHHH
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR-----DGG-----GRERTKKEFTE 331 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~t~~e~~~ 331 (357)
|||+++++..++|++++++++ |.+++.+...+.. .+........... ... .+.+|.+++.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-------~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-------AYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-------HHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 999998888899999999998 6777766544320 0000000000000 001 24579999999
Q ss_pred HHHHcCCceeEEeec
Q 018366 332 LAIAAGFKHINFASC 346 (357)
Q Consensus 332 ll~~aGf~~~~~~~~ 346 (357)
++++ ||++...++.
T Consensus 210 ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 210 LAPQ-GWRVERQWPF 223 (232)
T ss_pred HhhC-CCeEEeccce
Confidence 9999 9998877665
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=108.85 Aligned_cols=88 Identities=19% Similarity=0.434 Sum_probs=76.2
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHH
Q 018366 199 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCL 271 (357)
Q Consensus 199 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~ 271 (357)
||+|||+|..+..+++. +..+++++|. +++++.+++. .++.+..+|+.+ +++++ |+|++.+++||+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999999 8889999998 7777777652 457799999988 77765 999999999999 7778
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 018366 272 RILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 272 ~~L~~~~~~LkpgG~l~i 289 (357)
+++++++++|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=120.54 Aligned_cols=136 Identities=16% Similarity=0.244 Sum_probs=103.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCC-CCCCC--CEEEeccccccCCh
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDD 267 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~ 267 (357)
.+.+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++. +++.++.+|+.+ +.+.. |+|++.+++|+..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~- 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD- 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc-
Confidence 347999999999999999999999999999998 7777666543 478999999887 55543 9999999999984
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
+...+|++++++|+|||++++.++.... .. ...... . . .+....+.++|.+++.++ |+.+...
T Consensus 113 -~~~~~l~~~~~~L~~~G~l~~~~~~~~~------~~---~~~~~~-~-~-~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 113 -DLSQALSELARVLKPGGLLAFSTFGPGT------LH---ELRQSF-G-Q-HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEeCCccC------HH---HHHHHH-H-H-hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4578999999999999999997654322 00 011111 1 0 145567899999999988 8876543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.9e-15 Score=111.08 Aligned_cols=87 Identities=23% Similarity=0.446 Sum_probs=60.0
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C--C---ceEEEcCCCCCCC-CC-CEEEeccccccCC
Q 018366 199 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A--G---VEHVGGNMFDSVP-EG-DAILMKWILHCWD 266 (357)
Q Consensus 199 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--~---v~~~~~D~~~~~p-~~-D~i~~~~~lh~~~ 266 (357)
||||||+|.++..+++.+|..+++++|+ +.+++.++++ . . +++...|.....+ .. |+|++.+++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 7999999999999999999999999999 8899888764 1 2 3333334333222 24 999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCEE
Q 018366 267 DDHCLRILKNCYKAIPDNGKV 287 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l 287 (357)
++...+|+++++.|||||+|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 67789999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=132.44 Aligned_cols=145 Identities=15% Similarity=0.257 Sum_probs=110.1
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC---CCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD---SVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~---~~p~~ 253 (357)
...+++.++ ..+..+|||||||+|.++..+++... +++++|. +.+++.++. .+++.++.+|+.+ ++|..
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 346666666 44567999999999999999998753 6888898 778876543 2568899999864 44543
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|++..++||+++++..++|+++++.|||||++++.|.......... .. ......++...|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~~--------~~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------RK--------NNPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------cc--------CCCCeecChHHHHH
Confidence 999999999999988889999999999999999999987654321100 00 01233456889999
Q ss_pred HHHHcCCceeEE
Q 018366 332 LAIAAGFKHINF 343 (357)
Q Consensus 332 ll~~aGf~~~~~ 343 (357)
+|.++||.....
T Consensus 169 ~f~~~~~~~~~~ 180 (475)
T PLN02336 169 VFKECHTRDEDG 180 (475)
T ss_pred HHHHheeccCCC
Confidence 999999987643
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-13 Score=113.48 Aligned_cols=125 Identities=14% Similarity=0.253 Sum_probs=96.3
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-CEEE
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-DAIL 257 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D~i~ 257 (357)
+..+. ..+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|...+.+.. |+|+
T Consensus 24 ~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~ 102 (187)
T PRK08287 24 LSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF 102 (187)
T ss_pred HHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence 34454 55678999999999999999999999999999999 7777776541 46889989876555544 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
+....++ ...+++.+.+.|+|||++++..... .+.+++.+++++.|
T Consensus 103 ~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g 148 (187)
T PRK08287 103 IGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCG 148 (187)
T ss_pred ECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCC
Confidence 8776544 3568999999999999998844311 12467778999999
Q ss_pred CceeEEee
Q 018366 338 FKHINFAS 345 (357)
Q Consensus 338 f~~~~~~~ 345 (357)
|+.+++..
T Consensus 149 ~~~~~~~~ 156 (187)
T PRK08287 149 VSELDCVQ 156 (187)
T ss_pred CCcceEEE
Confidence 98777544
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=124.47 Aligned_cols=104 Identities=11% Similarity=0.226 Sum_probs=82.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-----CC--ceEEEcCCCCC--CC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-----AG--VEHVGGNMFDS--VP 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~~--v~~~~~D~~~~--~p 251 (357)
..+++.++ +..+|||+|||+|..+..+++..+ ..+++++|+ ++|++.++++ ++ |.++.+|+.+. ++
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34555444 456899999999999999999987 578999999 7787766542 33 56688999862 32
Q ss_pred C-----C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 252 E-----G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 252 ~-----~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
. . .++++..+++++++++...+|++++++|+|||.++|
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2 1 355666789999999999999999999999999986
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=108.37 Aligned_cols=158 Identities=17% Similarity=0.173 Sum_probs=117.3
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHH----HHhCCC--CCCc-eEEEcCCCCC-CC---------CC-CEEE
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV----VQDAPS--YAGV-EHVGGNMFDS-VP---------EG-DAIL 257 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~--~~~v-~~~~~D~~~~-~p---------~~-D~i~ 257 (357)
+|||||+|||..+..+++.+|+++..--|. +.. .....+ .+++ .-+..|+.++ .+ .. |.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999999999998755554 222 111111 1332 2344566552 21 13 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
+.|++|-.+.+.+..+++.+.++|+|||.|++.-++..++...+. -...+|.......+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999998766432221 12345544444334567789999999999999
Q ss_pred CceeEEeecCCceeEEEEeC
Q 018366 338 FKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 338 f~~~~~~~~~~~~~vie~~~ 357 (357)
|+.++.+.++.+.-++.++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999998877777765
|
The function of this family is unknown. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=115.16 Aligned_cols=102 Identities=17% Similarity=0.379 Sum_probs=87.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCCCCCCC--CEEEeccccccCChh
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFDSVPEG--DAILMKWILHCWDDD 268 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~p~~--D~i~~~~~lh~~~~~ 268 (357)
.+..+|||||||+|..+..+.+..|+.+++++|+ +++++.+++ .+++++..+|+.++++.+ |+|++..+|||++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 3567899999999999999999888899999998 889999876 367889999988866554 999999999999888
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
+..++++++.+++ +++++|.|...+.
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 8899999999997 5788888875443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-13 Score=124.33 Aligned_cols=153 Identities=11% Similarity=0.099 Sum_probs=113.8
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCCCCCCC-CEEE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFDSVPEG-DAIL 257 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~p~~-D~i~ 257 (357)
..+++.+. .++..+|||||||+|.++..+++.+ +.+++++|+ +++++.+++. ..+++...|+.+. +.. |.|+
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-NGQFDRIV 233 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-CCCCCEEE
Confidence 34556665 6677899999999999999998875 578999998 7888877653 2477777887543 333 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
+..+++|.++.+...++++++++|||||++++.+...+...... ..+++.. .++++..++.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHHHHHHH-CC
Confidence 99999999888888999999999999999999876554321110 0111111 135788889999988866 58
Q ss_pred CceeEEeecC
Q 018366 338 FKHINFASCV 347 (357)
Q Consensus 338 f~~~~~~~~~ 347 (357)
|.+.++...+
T Consensus 305 ~~v~d~~~~~ 314 (383)
T PRK11705 305 FVMEDWHNFG 314 (383)
T ss_pred cEEEEEecCh
Confidence 9988776544
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-12 Score=111.40 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=93.5
Q ss_pred hcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHH----hCCCCCCceEEEcCCCCC-----CCCC-CEE
Q 018366 188 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ----DAPSYAGVEHVGGNMFDS-----VPEG-DAI 256 (357)
Q Consensus 188 ~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~p~~-D~i 256 (357)
.++ +++..+|||+|||+|.++..+++..+..+++++|+ +.+++ .+++..++.++.+|..++ +++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 355 66778999999999999999999887668999998 66655 444456799999998653 2233 888
Q ss_pred EeccccccCChh-HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH
Q 018366 257 LMKWILHCWDDD-HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIA 335 (357)
Q Consensus 257 ~~~~~lh~~~~~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 335 (357)
++ +.+++ ....+|+++++.|||||+++|.=...+.+... ... +..++..+++++
T Consensus 146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-------------------~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-------------------DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-------------------CHH-HHHHHHHHHHHH
Confidence 74 33333 33467899999999999999942111110000 000 112344599999
Q ss_pred cCCceeEEeecCC
Q 018366 336 AGFKHINFASCVC 348 (357)
Q Consensus 336 aGf~~~~~~~~~~ 348 (357)
+||+.++......
T Consensus 201 aGF~~i~~~~l~p 213 (226)
T PRK04266 201 GGFEILEVVDLEP 213 (226)
T ss_pred cCCeEEEEEcCCC
Confidence 9999999887753
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-13 Score=119.87 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=102.4
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CEE
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DAI 256 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~i 256 (357)
++..++ ..++.+|||+|||+|..+..+++. +.+++++|. +.+++.+++. -++++...|+.. +++.. |+|
T Consensus 112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I 188 (287)
T PRK12335 112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFI 188 (287)
T ss_pred HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEE
Confidence 444444 234469999999999999999885 468999998 7777766532 257788888876 34444 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
++..++|++++++...+++++.+.|+|||+++++.....+....+ .+....+++++++++++
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~-- 250 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQ-- 250 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhC--
Confidence 999999999888899999999999999999888765433221100 00122357899999997
Q ss_pred CCceeEEe
Q 018366 337 GFKHINFA 344 (357)
Q Consensus 337 Gf~~~~~~ 344 (357)
+|+++...
T Consensus 251 ~~~i~~~~ 258 (287)
T PRK12335 251 DWEIVKYN 258 (287)
T ss_pred CCEEEEEe
Confidence 48888764
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=107.57 Aligned_cols=132 Identities=18% Similarity=0.228 Sum_probs=100.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCCC-CEEEeccccccCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPEG-DAILMKWILHCWD 266 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~~ 266 (357)
+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|..+..+.. |+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 346899999999999999999876 7888898 8888776652 35788889987743334 9999998887665
Q ss_pred hh-------------------HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 267 DD-------------------HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 267 ~~-------------------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
++ -...+|+++.+.|||||++++++.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 32 135789999999999999999774321 246
Q ss_pred HHHHHHHHcCCceeEEeecCCceeEEEEe
Q 018366 328 EFTELAIAAGFKHINFASCVCNLYIMEFF 356 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 356 (357)
++.++++++||....+....-..--+.++
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 77889999999988887766555444444
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=113.57 Aligned_cols=144 Identities=18% Similarity=0.190 Sum_probs=99.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCCCEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEGDAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~D~i~~~~~lh~ 264 (357)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .++.+..+|+.......|+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4567999999999999999998754 5888898 7788777642 3688999984322222399999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh-----hcCCCccCCHHHHHHHHHHcCCc
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT-----RDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
+++++...+++++.+.+++++. +.... ..+ . .......... ........+.++|.++++++||+
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~-i~~~~---~~~---~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 208 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLI-FTFAP---YTP---L----LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFK 208 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEE-EEECC---ccH---H----HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCc
Confidence 9988999999999997754443 33211 100 0 0011110000 00123446889999999999999
Q ss_pred eeEEeecCCc
Q 018366 340 HINFASCVCN 349 (357)
Q Consensus 340 ~~~~~~~~~~ 349 (357)
+.++.+...+
T Consensus 209 ~~~~~~~~~~ 218 (230)
T PRK07580 209 VVRTERISSG 218 (230)
T ss_pred eEeeeeccch
Confidence 9998776543
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.9e-14 Score=105.99 Aligned_cols=88 Identities=19% Similarity=0.414 Sum_probs=72.7
Q ss_pred EEEEcCCcchHHHHHHhhC---CCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC--CEEEec-ccccc
Q 018366 198 LVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG--DAILMK-WILHC 264 (357)
Q Consensus 198 vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~--D~i~~~-~~lh~ 264 (357)
|||+|||+|..+..+.+.+ |+.+++++|+ +++++.+++. .+++++..|+.+ +.+.+ |+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999998 8888877652 478999999987 44443 999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCC
Q 018366 265 WDDDHCLRILKNCYKAIPDNG 285 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG 285 (357)
+++++..++|+++.+.|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999997
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-13 Score=115.97 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=103.0
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------C----CceEEEcCCCCCCCCCCEEEeccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------A----GVEHVGGNMFDSVPEGDAILMKWI 261 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~D~~~~~p~~D~i~~~~~ 261 (357)
.++|||+|||+|-++..|++.. ..++++|. +.+++.|+++ . ++++...|.....+..|+|+|..+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 3689999999999999999985 67888898 8888888763 2 356666666554444699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcC----CCccCCHHHHHHHHHHcC
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDG----GGRERTKKEFTELAIAAG 337 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~t~~e~~~ll~~aG 337 (357)
++|. ++...+++.+.+.|||||+++|.+....-.. ...-....+........ ..++.++++...++..+|
T Consensus 168 leHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS----~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 168 LEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILS----FAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred HHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHH----hhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 9999 6678999999999999999999876432210 00000111111121111 235679999999999999
Q ss_pred CceeEEee
Q 018366 338 FKHINFAS 345 (357)
Q Consensus 338 f~~~~~~~ 345 (357)
+.+..+.-
T Consensus 242 ~~v~~v~G 249 (282)
T KOG1270|consen 242 AQVNDVVG 249 (282)
T ss_pred cchhhhhc
Confidence 98876643
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-13 Score=112.61 Aligned_cols=146 Identities=20% Similarity=0.315 Sum_probs=107.2
Q ss_pred ceEEEEcCCcchHHHHHHhhCCC--CeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC-----CCCC--CEEEecc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS-----VPEG--DAILMKW 260 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-----~p~~--D~i~~~~ 260 (357)
.+||+||||.|.....+++..|+ +++..+|. |..++..+++ .++.....|+..+ .+.+ |+|++..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999988 88999998 8888887764 3566666666552 2233 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCC--ccCCHHHHHHHHHHcCC
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGG--RERTKKEFTELAIAAGF 338 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~e~~~ll~~aGf 338 (357)
+|...+++....++++++++|||||.|++.|....+-.... .. ....++........|. ..++.+++..+|++|||
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHhccc
Confidence 99999999999999999999999999999988654310000 00 0011121111211122 34699999999999999
Q ss_pred ceeEE
Q 018366 339 KHINF 343 (357)
Q Consensus 339 ~~~~~ 343 (357)
..++.
T Consensus 231 ~~~~~ 235 (264)
T KOG2361|consen 231 EEVQL 235 (264)
T ss_pred chhcc
Confidence 98765
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=112.57 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=101.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHh------CC-CCCCceEEEcCCCC-CCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD------AP-SYAGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~------a~-~~~~v~~~~~D~~~-~~p~~- 253 (357)
.+...++.++ +++|||||||+|.++..++.+.+. .++++|. +....+ .- ....+.+...-+.+ +....
T Consensus 106 rl~p~l~~L~-gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~F 183 (315)
T PF08003_consen 106 RLLPHLPDLK-GKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAF 183 (315)
T ss_pred HHHhhhCCcC-CCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCc
Confidence 4555564343 579999999999999999999765 6899994 221111 11 11233333333333 22233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCch--hhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSS--ARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|+|-.||+|. .+....|+++++.|+|||.+++=..+++.+...... .++. -|.. --..+|...+..
T Consensus 184 DtVF~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa-----~m~n---v~FiPs~~~L~~ 253 (315)
T PF08003_consen 184 DTVFSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA-----KMRN---VWFIPSVAALKN 253 (315)
T ss_pred CEEEEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc-----CCCc---eEEeCCHHHHHH
Confidence 999999999998 455799999999999999999977776654322111 1111 1110 123579999999
Q ss_pred HHHHcCCceeEEeec
Q 018366 332 LAIAAGFKHINFASC 346 (357)
Q Consensus 332 ll~~aGf~~~~~~~~ 346 (357)
|++.+||+.++++..
T Consensus 254 wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 254 WLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHcCCceEEEecC
Confidence 999999999998765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.4e-13 Score=111.45 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=101.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CC--ceEEEcCCCC-CCC-C-CCEEEecccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AG--VEHVGGNMFD-SVP-E-GDAILMKWILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~--v~~~~~D~~~-~~p-~-~D~i~~~~~lh~ 264 (357)
...+|||||||-|.++..+++.. ..++++|. ++.++.|+.+ .. +++.+...++ ... . .|+|+|..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 35799999999999999999985 78899998 8888888754 22 4466665555 222 2 299999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhh-hhhhhcCC-----CccCCHHHHHHHHHHcCC
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDV-LLMTRDGG-----GRERTKKEFTELAIAAGF 338 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~t~~e~~~ll~~aGf 338 (357)
.+++ ..+++.+.+.+||||.+++.+..... .......+.. ..+...+. .+...++|+..++.++|+
T Consensus 137 v~dp--~~~~~~c~~lvkP~G~lf~STinrt~------ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDP--ESFLRACAKLVKPGGILFLSTINRTL------KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCH--HHHHHHHHHHcCCCcEEEEeccccCH------HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 9655 57999999999999999998765322 1111111111 11111122 244578999999999999
Q ss_pred ceeEEeec
Q 018366 339 KHINFASC 346 (357)
Q Consensus 339 ~~~~~~~~ 346 (357)
.+.+....
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 98876544
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-12 Score=113.94 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=98.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcCCCCCCCCC-CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFDSVPEG-DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~~~p~~-D~i~~~~ 260 (357)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.++++ .++.|...|+.+. +.. |+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-SGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-CCCcCEEEEcC
Confidence 3579999999999999999986 468999999 7788776542 2467888887542 333 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC------CccCCHHHHHHHHH
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG------GRERTKKEFTELAI 334 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~t~~e~~~ll~ 334 (357)
++||++++....+++.+.+. .+||. +|.. .+. . .. ...+..... ...+ ...+++++++++|+
T Consensus 221 vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~--~p~---~-~~---~~~l~~~g~-~~~g~~~~~r~y~~s~eel~~lL~ 288 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLASL-AEKRL-IISF--APK---T-LY---YDILKRIGE-LFPGPSKATRAYLHAEADVERALK 288 (315)
T ss_pred EEEecCHHHHHHHHHHHHhh-cCCEE-EEEe--CCc---c-hH---HHHHHHHHh-hcCCCCcCceeeeCCHHHHHHHHH
Confidence 99999888777888888764 55444 4422 111 0 00 001111100 0111 12347999999999
Q ss_pred HcCCceeEEeecCCce---eEEEEeC
Q 018366 335 AAGFKHINFASCVCNL---YIMEFFK 357 (357)
Q Consensus 335 ~aGf~~~~~~~~~~~~---~vie~~~ 357 (357)
++||++....-....+ .++|++|
T Consensus 289 ~AGf~v~~~~~~~~~~y~~~l~~~~~ 314 (315)
T PLN02585 289 KAGWKVARREMTATQFYFSRLLEAVP 314 (315)
T ss_pred HCCCEEEEEEEeecceeHHhhhhhcc
Confidence 9999988765554433 2566543
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=114.09 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=80.3
Q ss_pred CCCceEEEEcCCcchHHHH--HHhhCCCCeEEEeec-hHHHHhCCC--------CCCceEEEcCCCCCCC--CC-CEEEe
Q 018366 193 QNVERLVDVGGGFGVTLSM--ITSKYPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFDSVP--EG-DAILM 258 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~~~p--~~-D~i~~ 258 (357)
.++.+|+|||||.|.++.. ++..+|+.+++++|. +++++.|++ .++++|+.+|..+..+ .. |+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3678999999998854333 445689999999999 778877664 1579999999987432 23 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. ++|+|+.++..++|+++++.|+|||.+++-.
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999987888999999999999999999944
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=114.39 Aligned_cols=107 Identities=22% Similarity=0.291 Sum_probs=85.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcCCCCCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFDSVPE- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~p~- 252 (357)
-+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++. .++++...|.++..+.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 4566676 33346999999999999999999999999999998 6677766541 2678999998875543
Q ss_pred C-CEEEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 253 G-DAILMKWILHC---WDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 253 ~-D~i~~~~~lh~---~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. |+|+++-.+|. ++++...++++.+++.|+|||.++++.
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 99999766653 455567799999999999999999974
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-12 Score=104.44 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=72.4
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCC-CCCC-CEEEeccccccC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDS-VPEG-DAILMKWILHCW 265 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~-~p~~-D~i~~~~~lh~~ 265 (357)
..+|||+|||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+. .... |+|++.. ++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 57999999999999999999899999999998 666665543 24699999998772 2223 9998865 5443
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
..+++.+++.|+|||++++..
T Consensus 122 -----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 122 -----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -----HHHHHHHHHhcCCCCEEEEEc
Confidence 467888999999999999863
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-12 Score=110.36 Aligned_cols=143 Identities=14% Similarity=0.107 Sum_probs=97.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-C-CC-CC-CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-S-VP-EG-DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~-~p-~~-D~i~~~~~l 262 (357)
.+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. .+++++..|+.+ + .+ .. |+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35679999999999999988876 457888887 6666665531 346777777655 2 12 23 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhh--hhhhh--hc--CCCccCCHHHHHHHHHHc
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLD--VLLMT--RD--GGGRERTKKEFTELAIAA 336 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~--~~~~~--~~--~~~~~~t~~e~~~ll~~a 336 (357)
++.++ ...+|+.+.+.|+|||++++....... ... ...... ..... .. ......+.++|.++++++
T Consensus 125 ~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (233)
T PRK05134 125 EHVPD--PASFVRACAKLVKPGGLVFFSTLNRNL-----KSY-LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQA 196 (233)
T ss_pred hccCC--HHHHHHHHHHHcCCCcEEEEEecCCCh-----HHH-HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHC
Confidence 99854 568999999999999999987542111 000 000000 00000 00 013456899999999999
Q ss_pred CCceeEEee
Q 018366 337 GFKHINFAS 345 (357)
Q Consensus 337 Gf~~~~~~~ 345 (357)
||++++...
T Consensus 197 Gf~~v~~~~ 205 (233)
T PRK05134 197 GLEVQDITG 205 (233)
T ss_pred CCeEeeeee
Confidence 999987753
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-11 Score=111.11 Aligned_cols=107 Identities=17% Similarity=0.294 Sum_probs=84.2
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCCC-CEEE
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPEG-DAIL 257 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~~-D~i~ 257 (357)
+++.++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. -..+++..|.....+.. |+|+
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv 266 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII 266 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence 445455 23345899999999999999999999999999998 6777777642 23567788887755444 9999
Q ss_pred eccccccC---ChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 258 MKWILHCW---DDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 258 ~~~~lh~~---~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
++-.+|+. ......++++++.+.|||||.++|+..
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999863 234568999999999999999998764
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-11 Score=103.11 Aligned_cols=131 Identities=11% Similarity=0.092 Sum_probs=97.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------------------CCCceEEEcCCCCCCC--
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFDSVP-- 251 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~~~p-- 251 (357)
.+..+|||+|||.|..+..|+++ +..++++|+ +..++.+.+ ..+|++..+|+++..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 34579999999999999999986 678999998 666665311 2468899999998321
Q ss_pred -C-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018366 252 -E-GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEF 329 (357)
Q Consensus 252 -~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 329 (357)
. .|.|+-..++||++.+.....++++.++|||||++++.....+..... . -....+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 2 399999999999999998999999999999999988876654321100 0 0123588999
Q ss_pred HHHHHHcCCceeEEe
Q 018366 330 TELAIAAGFKHINFA 344 (357)
Q Consensus 330 ~~ll~~aGf~~~~~~ 344 (357)
.++|.. +|.+..+.
T Consensus 173 ~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 173 EALYGG-HYEIELLE 186 (213)
T ss_pred HHHhcC-CceEEEEe
Confidence 998874 46655443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=102.29 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=89.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC-CEEEecccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG-DAILMKWILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~ 264 (357)
+..+|||+|||+|..+..++...|+.+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 467999999999999999999999999999998 7788776542 458999999877 33223 99998652
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
.+...+++++++.|||||++++.+... ...++.++.++.|+.+.+++
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEeeeE
Confidence 345689999999999999999875311 13345666777788877664
Q ss_pred ec
Q 018366 345 SC 346 (357)
Q Consensus 345 ~~ 346 (357)
..
T Consensus 169 ~~ 170 (187)
T PRK00107 169 EL 170 (187)
T ss_pred EE
Confidence 43
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-12 Score=107.29 Aligned_cols=136 Identities=18% Similarity=0.275 Sum_probs=98.8
Q ss_pred hcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCCCCCCC--CEEEecc
Q 018366 188 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFDSVPEG--DAILMKW 260 (357)
Q Consensus 188 ~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~p~~--D~i~~~~ 260 (357)
.++ -....+++|+|||.|.++..|+.++. +.+.+|+ +..++.+++ .++|+++..|+.+..|.+ |+|+++-
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 466 45668999999999999999999973 6788888 778887764 378999999998876765 9999999
Q ss_pred ccccCCh-hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 261 ILHCWDD-DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 261 ~lh~~~~-~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
++|++++ ++...+++++.++|+|||.|++.+.-- . ... . -|.....+.+.++|.+. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-~----------------~c~--~-wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-A----------------NCR--R-WGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-H----------------HHH--H-TT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-C----------------ccc--c-cCcccchHHHHHHHHHH-hh
Confidence 9999986 678899999999999999999977521 0 011 1 23444788899999886 77
Q ss_pred eeEEeecC
Q 018366 340 HINFASCV 347 (357)
Q Consensus 340 ~~~~~~~~ 347 (357)
.++.....
T Consensus 174 ~~~~~~~~ 181 (201)
T PF05401_consen 174 EVERVECR 181 (201)
T ss_dssp EEEEEEEE
T ss_pred heeEEEEc
Confidence 77665543
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-11 Score=97.84 Aligned_cols=143 Identities=17% Similarity=0.215 Sum_probs=98.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC---CCCCC--CEEEeccccccCCh
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD---SVPEG--DAILMKWILHCWDD 267 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~p~~--D~i~~~~~lh~~~~ 267 (357)
+..+|||+|||.|.++..|.+. .++++.++++ ++.+..+.+ ..+.++.+|+.+ .+|+. |.|+++.+|.+.
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~-- 88 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV-- 88 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH--
Confidence 5689999999999999988886 5888888887 444443332 468899999987 46654 999999999998
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeccCC----------CCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIVPE----------IPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
.+..++|+++.|+ |.+.+|.=+-... ++.+........+++ +++-+..|..+++++.++.|
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd------TPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD------TPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC------CCCcccccHHHHHHHHHHCC
Confidence 5567888887665 5455553221100 000000000011111 34566779999999999999
Q ss_pred CceeEEeecCCc
Q 018366 338 FKHINFASCVCN 349 (357)
Q Consensus 338 f~~~~~~~~~~~ 349 (357)
+++++.....++
T Consensus 160 i~I~~~~~~~~~ 171 (193)
T PF07021_consen 160 IRIEERVFLDGG 171 (193)
T ss_pred CEEEEEEEEcCC
Confidence 999998876543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=107.74 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=97.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----C-CceEEEcCCCC-CCC--CC-CEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----A-GVEHVGGNMFD-SVP--EG-DAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-~v~~~~~D~~~-~~p--~~-D~i~~~~~l 262 (357)
...+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. . ++.+...|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999999888654 5888887 6676665541 2 57888888765 222 33 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh-h----c-CCCccCCHHHHHHHHHHc
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT-R----D-GGGRERTKKEFTELAIAA 336 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~t~~e~~~ll~~a 336 (357)
|+.. +...+|+++++.|+|||.+++.....+. ...........+.. . . ......+.+++.++++++
T Consensus 123 ~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVP--DPQAFIRACAQLLKPGGILFFSTINRTP------KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCC--CHHHHHHHHHHhcCCCcEEEEEecCCCc------hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 9985 4568999999999999999987642211 00000000000000 0 0 012345889999999999
Q ss_pred CCceeEEee
Q 018366 337 GFKHINFAS 345 (357)
Q Consensus 337 Gf~~~~~~~ 345 (357)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999988753
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-12 Score=105.18 Aligned_cols=139 Identities=21% Similarity=0.304 Sum_probs=96.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----CCC-ceEEEcCCCCCCCC--C-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAG-VEHVGGNMFDSVPE--G-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-v~~~~~D~~~~~p~--~-D~i~~~~~lh 263 (357)
...+.||+|+|.|..+..++...-+ ++..+|. +..++.+++ .++ .++.+.-+.+-.|. . |+||+.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 4679999999999999988665432 5566665 677777663 234 35565555553342 3 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEE
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINF 343 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 343 (357)
|++|++..++|++++++|+|+|.|+|-|.+...+. ..+|- ..+.-.|+.+.|+++|++||++++..
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999999876431 01110 11344689999999999999999986
Q ss_pred eecC
Q 018366 344 ASCV 347 (357)
Q Consensus 344 ~~~~ 347 (357)
....
T Consensus 200 ~~Q~ 203 (218)
T PF05891_consen 200 EKQK 203 (218)
T ss_dssp EE-T
T ss_pred cccc
Confidence 5543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-11 Score=105.87 Aligned_cols=133 Identities=20% Similarity=0.307 Sum_probs=97.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG--D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~--D 254 (357)
.+++.++ ....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++.. ++++++.+|+.++.+.. |
T Consensus 79 ~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD 156 (251)
T TIGR03534 79 AALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFD 156 (251)
T ss_pred HHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCcee
Confidence 3444443 2346899999999999999999999999999998 7777776542 46899999998865543 9
Q ss_pred EEEecccccc------CChh------------------HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh
Q 018366 255 AILMKWILHC------WDDD------------------HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL 310 (357)
Q Consensus 255 ~i~~~~~lh~------~~~~------------------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~ 310 (357)
+|+++-..+. +..+ ....+++++.+.|+|||++++...
T Consensus 157 ~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------------ 218 (251)
T TIGR03534 157 LIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------------ 218 (251)
T ss_pred EEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC------------------
Confidence 9998543322 2111 124789999999999999887321
Q ss_pred hhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecCC
Q 018366 311 DVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVC 348 (357)
Q Consensus 311 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 348 (357)
....+++.++|+++||+.+++.....
T Consensus 219 ------------~~~~~~~~~~l~~~gf~~v~~~~d~~ 244 (251)
T TIGR03534 219 ------------YDQGEAVRALFEAAGFADVETRKDLA 244 (251)
T ss_pred ------------ccHHHHHHHHHHhCCCCceEEEeCCC
Confidence 01246788999999999888866543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=100.14 Aligned_cols=159 Identities=14% Similarity=0.196 Sum_probs=101.2
Q ss_pred hhcccCcchHHHHHHH----HhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhC
Q 018366 158 EYASGNPGFNETYHKA----MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 233 (357)
Q Consensus 158 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a 233 (357)
+.+.++|+....|+.+ +..+....+..+++.+...++...|.|+|||.+.++..+.. ..++.-+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S----
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC----
Confidence 3445566655555544 44444455677777776445567999999999999976542 346777886221
Q ss_pred CCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh
Q 018366 234 PSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL 310 (357)
Q Consensus 234 ~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~ 310 (357)
.+ .++..|+.+ |++++ |++++...|.. .+...+|+++.|.|||||.|.|.|....
T Consensus 105 --n~--~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--------------- 162 (219)
T PF05148_consen 105 --NP--RVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR--------------- 162 (219)
T ss_dssp --ST--TEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------------
T ss_pred --CC--CEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc---------------
Confidence 12 467799977 88776 99999988876 4678999999999999999999986421
Q ss_pred hhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 311 DVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 311 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.-+.+++.+.++..||+....-.....+.+.+++|
T Consensus 163 ------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 ------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp -------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred ------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 12467888999999999988766667777888764
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-10 Score=96.88 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=110.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCC--CeEEEeec-hHHHHhCCC------CCCc-eEEEcCCCCC--C----CCCCEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPS------YAGV-EHVGGNMFDS--V----PEGDAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~v-~~~~~D~~~~--~----p~~D~i 256 (357)
..+.+||||.||+|.+....+..+|. .++...|. |.-++..++ ...+ +|..+|.++. + |..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 67788887 555555543 2344 9999999982 2 233999
Q ss_pred EeccccccCChhH-HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH
Q 018366 257 LMKWILHCWDDDH-CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIA 335 (357)
Q Consensus 257 ~~~~~lh~~~~~~-~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 335 (357)
+.+.++..|+|.+ +...|+-+.+++.|||+++-..--+.+ ..+.....+.-+......-.+.||..|+.+++++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP-----Qle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP-----QLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEA 288 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc-----chHHHHHHHhcccCCCceEEEecCHHHHHHHHHH
Confidence 9999999999877 446799999999999999985532221 1111111111000000001356899999999999
Q ss_pred cCCceeEEeecC-CceeEEEEeC
Q 018366 336 AGFKHINFASCV-CNLYIMEFFK 357 (357)
Q Consensus 336 aGf~~~~~~~~~-~~~~vie~~~ 357 (357)
|||+-++..-.. +=+.|.-++|
T Consensus 289 aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 289 AGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred cCCchhhheeccCCceEEEeecC
Confidence 999977664443 3355655543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=101.54 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=96.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC---CCCCC--CEE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD---SVPEG--DAI 256 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~p~~--D~i 256 (357)
+.+.+.++ +..+|||+|||+|.++..+++.. ...++++|+ +++++.++. .+++++.+|+.+ +.+.. |+|
T Consensus 5 ~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 5 ESILNLIP---PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred HHHHHhcC---CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEE
Confidence 34455443 45699999999999999887653 567788998 777777654 358888888865 24433 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhh----------hhhhhhhhcCCCccCCH
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL----------LDVLLMTRDGGGRERTK 326 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~t~ 326 (357)
++++++||++ +...+|+++.+.++ .+++.-+.... ........ +...... ..+....+.
T Consensus 80 i~~~~l~~~~--d~~~~l~e~~r~~~---~~ii~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~ 148 (194)
T TIGR02081 80 ILSQTLQATR--NPEEILDEMLRVGR---HAIVSFPNFGY-----WRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTI 148 (194)
T ss_pred EEhhHhHcCc--CHHHHHHHHHHhCC---eEEEEcCChhH-----HHHHHHHHhCCccccCCCCCccccC-CCCcccCcH
Confidence 9999999995 45688998887655 33332111100 00000000 0000000 012356799
Q ss_pred HHHHHHHHHcCCceeEEeecC
Q 018366 327 KEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~~ 347 (357)
+++.++++++||++++.....
T Consensus 149 ~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 149 ADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred HHHHHHHHHCCCEEEEEEEec
Confidence 999999999999998876653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=102.11 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=95.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCC-CCCCC-CE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFD-SVPEG-DA 255 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~-~~p~~-D~ 255 (357)
.++..++ .-++.++||+|||.|..+..|++. +..++.+|. +..++.+++ .-.|+....|+.+ .++.. |+
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 4555555 445689999999999999999998 567888887 555554432 2248888899987 56655 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIA 335 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 335 (357)
|++..++++++.+...++++++.+.++|||++++...+...+...+ .. ....+.+.|+.+.+.
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~--------~~--------~~f~~~~~EL~~~y~- 160 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP--------SP--------FPFLLKPGELREYYA- 160 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S--------S----------S--B-TTHHHHHTT-
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC--------CC--------CCcccCHHHHHHHhC-
Confidence 9999999999999999999999999999999999766432211000 00 112245678888877
Q ss_pred cCCceeEE
Q 018366 336 AGFKHINF 343 (357)
Q Consensus 336 aGf~~~~~ 343 (357)
||+++..
T Consensus 161 -dW~il~y 167 (192)
T PF03848_consen 161 -DWEILKY 167 (192)
T ss_dssp -TSEEEEE
T ss_pred -CCeEEEE
Confidence 6887764
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-11 Score=93.74 Aligned_cols=100 Identities=14% Similarity=0.216 Sum_probs=77.8
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCC---CCCC-
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDS---VPEG- 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~---~p~~- 253 (357)
++..+. ..+..+|||+|||+|.++..+++..|..+++++|. +.+++.+++ ..+++++.+|.... .+..
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 445454 45567999999999999999999999889999998 777776543 25688888887642 2233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
|+|++....+ ...++++.+++.|+|||++++.
T Consensus 90 D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 9999876543 3458999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-10 Score=99.68 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=91.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hH----HHHhCCCCCCceEEEcCCCCCC-----CCC-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFDSV-----PEG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~~-----p~~-D~i~~~ 259 (357)
+++..+|||+|||+|.++..++.... .-.++.+|+ +. +++.++..++|.++.+|+..+. ... |+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 56778999999999999999999863 457889998 43 6666666678999999986532 123 999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
... + ++...++.++++.|||||+++|.......+...++ ...+. +|. ++|+++||+
T Consensus 210 va~---p-dq~~il~~na~r~LKpGG~~vI~ika~~id~g~~p------------------e~~f~-~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VAQ---P-DQARIVALNAQYFLKNGGHFIISIKANCIDSTAKP------------------EVVFA-SEV-QKLKKEGLK 265 (293)
T ss_pred CCC---c-chHHHHHHHHHHhccCCCEEEEEEeccccccCCCH------------------HHHHH-HHH-HHHHHcCCc
Confidence 641 2 34456677899999999999994221111100000 00011 344 888999999
Q ss_pred eeEEeecC
Q 018366 340 HINFASCV 347 (357)
Q Consensus 340 ~~~~~~~~ 347 (357)
.++.+...
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 99887765
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-10 Score=98.62 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=97.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------------------CCCceEEEcCCCCCCC--
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFDSVP-- 251 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~~~p-- 251 (357)
.+..+|||+|||.|..+..|+++ +..++++|+ +..++.+.. ..+|++..+|+++..+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 34579999999999999999985 678999998 666665311 2468899999998322
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018366 252 -EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEF 329 (357)
Q Consensus 252 -~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 329 (357)
.. |.|+-..++|+++.+...++++++.++|+|||+++++.....+.... . -....|.+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------g-Pp~~~~~~el 175 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------G-PPFSVSDEEV 175 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------C-CCCCCCHHHH
Confidence 12 99999999999999999999999999999999866655544322100 0 0123589999
Q ss_pred HHHHHHcCCceeEEee
Q 018366 330 TELAIAAGFKHINFAS 345 (357)
Q Consensus 330 ~~ll~~aGf~~~~~~~ 345 (357)
.++|.. +|.+..+..
T Consensus 176 ~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 176 EALYAG-CFEIELLER 190 (218)
T ss_pred HHHhcC-CceEEEeee
Confidence 999863 366665544
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-11 Score=101.91 Aligned_cols=99 Identities=22% Similarity=0.396 Sum_probs=79.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-CEEEecccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G-DAILMKWILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~-D~i~~~~~lh~ 264 (357)
...+|||+|||+|.++..+++.+|+.+++.+|+ +.+++.+++. ..++++..|.++..+. . |+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 457999999999999999999999989999998 7777777542 2388999999986663 3 99999988776
Q ss_pred CCh---hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 265 WDD---DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 265 ~~~---~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-.+ +-..++++.+.+.|+|||+++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 543 2467999999999999999987553
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=103.77 Aligned_cols=105 Identities=15% Similarity=0.185 Sum_probs=80.0
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCC-CC-C--CCCC
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNM-FD-S--VPEG 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~-~~-~--~p~~ 253 (357)
+.+.+.. +..+|||+|||+|..+..+++.+|+.+++++|+ +++++.+++ .++++++.+|+ .. + ++.+
T Consensus 33 ~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 110 (202)
T PRK00121 33 WAELFGN--DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDG 110 (202)
T ss_pred HHHHcCC--CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCcc
Confidence 4444442 457999999999999999999999999999998 778877754 25799999998 33 3 4443
Q ss_pred --CEEEeccccccCCh------hHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 --DAILMKWILHCWDD------DHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 --D~i~~~~~lh~~~~------~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++....++... .....+|+++++.|||||++++..
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 99988665432211 124689999999999999999965
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-10 Score=98.84 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=103.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D 254 (357)
+-+++.++ .....+|+|+|||.|.++..+++.+|+.+++.+|. ...++.+++. .+.++...|..++..+. |
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 34677787 44445999999999999999999999999999998 5566666653 22357778888765554 9
Q ss_pred EEEeccccccCC---hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 255 AILMKWILHCWD---DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 255 ~i~~~~~lh~~~---~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
+|+++=-+|.-- ..-..++++...+.|++||.|.|+-.-. . .+..
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~----------------------------l----~y~~ 274 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH----------------------------L----PYEK 274 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC----------------------------C----ChHH
Confidence 999999998632 2233489999999999999999866411 0 0223
Q ss_pred HHHHcCCceeEEeecCCceeEEEEeC
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.|++. |..+++....+++.|+.++|
T Consensus 275 ~L~~~-Fg~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 275 KLKEL-FGNVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred HHHHh-cCCEEEEEeCCCEEEEEEec
Confidence 34443 66677777778888887765
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=98.97 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=79.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhCCCCCCceEEEcCCCCC---------CCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS---------VPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~p~ 252 (357)
.++.+.+..+++..+|||||||+|.++..+++.. +..+++++|+.++. ..++++++.+|+.++ .+.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3455555434567799999999999999999986 45689999985532 235699999999873 333
Q ss_pred -C-CEEEeccccccCChhH---------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 -G-DAILMKWILHCWDDDH---------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 -~-D~i~~~~~lh~~~~~~---------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. |+|++..+.+....+. ...+|+.+++.|||||++++...
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3 9999977766654321 24689999999999999999653
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=102.43 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=97.1
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-CEEEecccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G-DAILMKWIL 262 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~-D~i~~~~~l 262 (357)
..+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++. .++.++.+|++++.+. . |+|+++--.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999998 7777766542 4799999999876553 3 999884321
Q ss_pred cc------CC------------------hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhc
Q 018366 263 HC------WD------------------DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD 318 (357)
Q Consensus 263 h~------~~------------------~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (357)
.. .. -+....+++++.+.|+|||++++ +..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g------------------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG------------------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC-------------------------
Confidence 11 11 12246788999999999999988 210
Q ss_pred CCCccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEEe
Q 018366 319 GGGRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEFF 356 (357)
Q Consensus 319 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~ 356 (357)
. ...+++.+++++.||..+++.... +...++.++
T Consensus 240 --~--~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 240 --Y--DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred --c--hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 0 123568889999999977775433 444555444
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-10 Score=94.10 Aligned_cols=123 Identities=21% Similarity=0.307 Sum_probs=90.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CC-ceEEEcCCCCCCCC-C-CEEEeccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFDSVPE-G-DAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~~~p~-~-D~i~~~~~ 261 (357)
.+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .+ +.++.+|+.++++. . |+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 35568999999999999999988 578889998 7777766431 22 88899998886554 3 99988655
Q ss_pred cccCC-------------------hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 262 LHCWD-------------------DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 262 lh~~~-------------------~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+.... ......+++++.+.|||||+++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 43311 1234678999999999999998754211
Q ss_pred cCCHHHHHHHHHHcCCceeEEeec
Q 018366 323 ERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
...+++.+++.++||++......
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeec
Confidence 12456788999999998776544
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-11 Score=99.54 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=86.2
Q ss_pred EEeec-hHHHHhCCCC---------CCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 222 VNFDL-PHVVQDAPSY---------AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 222 ~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
+++|. ++|++.|+++ .+++++.+|+.+ +++++ |+|++..++|+++ +..++|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence 36787 8888877431 368999999988 66654 9999999999994 56799999999999999999
Q ss_pred EEeeccCCCCCCCchhhhhhh-hhhhhhhhcC-----------CCccCCHHHHHHHHHHcCCceeEEeecCCcee
Q 018366 289 VMNSIVPEIPEVSSSARETSL-LDVLLMTRDG-----------GGRERTKKEFTELAIAAGFKHINFASCVCNLY 351 (357)
Q Consensus 289 i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 351 (357)
+.|...++.........+... .-........ -...++.+++.++|+++||+.++......+..
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 999875442100000000000 0000000000 02346899999999999999998877765433
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-10 Score=91.41 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=81.5
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCC---CCCCCE
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDS---VPEGDA 255 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~---~p~~D~ 255 (357)
+..+. +.+..+++|||||+|..+.+++...|..+++.+|. ++.++..+. .+++.++.+|..+. .|..|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 55565 67888999999999999999999999999999997 666665543 27899999998773 333499
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|++... .....+|+.+...|||||+|++.-.
T Consensus 106 iFIGGg------~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 106 IFIGGG------GNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred EEECCC------CCHHHHHHHHHHHcCcCCeEEEEee
Confidence 999876 2346899999999999999999444
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-11 Score=101.00 Aligned_cols=99 Identities=14% Similarity=0.258 Sum_probs=76.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-C---CCCC--CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-S---VPEG--DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~---~p~~--D~i~~~~ 260 (357)
...+|||||||+|.++..+++.+|+..++++|+ +.+++.+++ ..+++++.+|+.+ + .+.+ |.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 346999999999999999999999999999998 777776653 2579999999875 1 3443 8888765
Q ss_pred ccccCChhH------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 261 ILHCWDDDH------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 261 ~lh~~~~~~------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
..++..... ...+++.++++|||||.|++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 443322111 14789999999999999988653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-10 Score=100.12 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=86.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CC----ceEEEcCCCCCCCCCCEEEeccccccC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AG----VEHVGGNMFDSVPEGDAILMKWILHCW 265 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~----v~~~~~D~~~~~p~~D~i~~~~~lh~~ 265 (357)
+..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++. .+ +.+..+|. ..|+|+++...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~--- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA--- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH---
Confidence 5679999999999999887765443 6889998 7788877652 22 22222221 23999875432
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+....+++++.+.|||||++++..... ...+++.+.+++.||++++...
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILE-----------------------------EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcH-----------------------------hhHHHHHHHHHHCCCEEEEEEE
Confidence 345688999999999999999965321 1246778899999999998888
Q ss_pred cCCceeEEE
Q 018366 346 CVCNLYIME 354 (357)
Q Consensus 346 ~~~~~~vie 354 (357)
..+..+++-
T Consensus 239 ~~~W~~~~~ 247 (250)
T PRK00517 239 RGEWVALVG 247 (250)
T ss_pred eCCEEEEEE
Confidence 766666543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.4e-10 Score=99.51 Aligned_cols=94 Identities=18% Similarity=0.329 Sum_probs=75.2
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEec------
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMK------ 259 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~------ 259 (357)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++. .+++++.+|++++++. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 7787777652 3599999999886654 3 999885
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 018366 260 -------WILHCWDD----------DHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 260 -------~~lh~~~~----------~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.+++|-|. +....+++++.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23333221 2456899999999999998876
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.4e-10 Score=94.43 Aligned_cols=158 Identities=17% Similarity=0.207 Sum_probs=112.9
Q ss_pred hhhcccCcchHHHHHHHHhhcc----hhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHh
Q 018366 157 FEYASGNPGFNETYHKAMFNHS----TIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD 232 (357)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 232 (357)
++.+..+|+....|+.+.+... ...+..|++.+..-++...|-|+|||.+.++.. ....+.-+|+-.+
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a~--- 210 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVAV--- 210 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc-----cccceeeeeeecC---
Confidence 4455677777777776655433 334566777666445678999999999988871 1234666675322
Q ss_pred CCCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhh
Q 018366 233 APSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL 309 (357)
Q Consensus 233 a~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~ 309 (357)
+-.++..|+.+ |+++. |++++...|.. .+...+++++++.|+|||.+.|.|...
T Consensus 211 -----~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S--------------- 267 (325)
T KOG3045|consen 211 -----NERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKS--------------- 267 (325)
T ss_pred -----CCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhh---------------
Confidence 23567789988 77765 99988887765 567899999999999999999988532
Q ss_pred hhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 310 LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 310 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
++.+...+.+.|...||.+.........+.+.++.|
T Consensus 268 ------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 268 ------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred ------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 112345588899999999887777677777877764
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=103.72 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=72.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCC---eEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC--CEEEeccccccC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQI---KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG--DAILMKWILHCW 265 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~ 265 (357)
+..+|||+|||+|.++..+++..|.. .++++|+ +.+++.+++. +++.+..+|..+ +++++ |+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 44689999999999999999887753 6799998 8888887654 678999999887 66654 99987543
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
...+++++++|||||+++++.+
T Consensus 161 -----~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 -----PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -----CCCHHHHHhhccCCCEEEEEeC
Confidence 1236788999999999999764
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=97.58 Aligned_cols=98 Identities=16% Similarity=0.186 Sum_probs=75.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-- 252 (357)
.+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +++++.+++. .+++++.+|..+..+.
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 4555555 55668999999999999999988764 557899998 7777766541 3589999999874432
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
. |+|++..++++++ +++.+.|+|||+|++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 3 9999998887764 3577889999999874
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=98.77 Aligned_cols=96 Identities=23% Similarity=0.363 Sum_probs=75.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEecc---
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKW--- 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~--- 260 (357)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|++++++. . |+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 456899999999999999999999999999999 7888777642 4689999999876654 3 9999851
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 018366 261 ----------ILHCWDD----------DHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 261 ----------~lh~~~~----------~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.+++.+. +....+++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1121111 2236789999999999999886
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.5e-10 Score=96.96 Aligned_cols=123 Identities=13% Similarity=0.148 Sum_probs=92.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCCCC-CCC-CEEEeccccccCChhHH
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFDSV-PEG-DAILMKWILHCWDDDHC 270 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~-p~~-D~i~~~~~lh~~~~~~~ 270 (357)
..+|||+|||+|.++..++.+.+..+++++|+ +.+++.+++. ++++++.+|+++.. +.. |+|+++-.+++.+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46999999999999999988887789999998 8888887763 67999999998833 333 99999888887654322
Q ss_pred ------------------HHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 271 ------------------LRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 271 ------------------~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.+.++.+...|+|+|.+.++-. ..+ . + ....+.++++++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys---s~~----------~--------y--~~sl~~~~y~~~ 201 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS---GRP----------Y--------Y--DGTMKSNKYLKW 201 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEe---ccc----------c--------c--cccCCHHHHHHH
Confidence 3566777888999997777621 110 0 0 112478999999
Q ss_pred HHHcCCce
Q 018366 333 AIAAGFKH 340 (357)
Q Consensus 333 l~~aGf~~ 340 (357)
++++||..
T Consensus 202 l~~~g~~~ 209 (279)
T PHA03411 202 SKQTGLVT 209 (279)
T ss_pred HHhcCcEe
Confidence 99999975
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=100.77 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=94.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC-CC-C-C-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS-VP-E-G-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-~p-~-~-D~i~~~~~lh 263 (357)
+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++. .+++++.+|++++ .+ . . |+|+++--..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 446999999999999999999999999999999 8888877652 3689999999763 33 2 3 9999854221
Q ss_pred cCC-----------------------hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC
Q 018366 264 CWD-----------------------DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG 320 (357)
Q Consensus 264 ~~~-----------------------~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
.-. -+-...+++.+.+.|+|||++++ |...
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~-------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF-------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------------------------
Confidence 100 01234777777889999998765 3211
Q ss_pred CccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEE
Q 018366 321 GRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEF 355 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~ 355 (357)
...+.+.+++++.||..+++.... +...++.+
T Consensus 384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 384 ---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLG 416 (423)
T ss_pred ---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEE
Confidence 124578889999999988876654 44555544
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=94.52 Aligned_cols=125 Identities=12% Similarity=0.171 Sum_probs=95.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCCCC--CEEEe
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVPEG--DAILM 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p~~--D~i~~ 258 (357)
.+...+|||+|||+|..+..++++.++.+++++++ +.+.+.|++. .|++++..|+.+ ..+.. |+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44578999999999999999999999899999999 7788877652 689999999987 22222 99998
Q ss_pred ccccccCChh----------------HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 259 KWILHCWDDD----------------HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 259 ~~~lh~~~~~----------------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+=-.+.-+.. ...++++.+.+.|||||++.++...-
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------------------------- 173 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------------------------- 173 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------------------
Confidence 7666543322 24688999999999999999976411
Q ss_pred cCCHHHHHHHHHHcCCceeEEeec
Q 018366 323 ERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
...++.+++.+.+|...++...
T Consensus 174 --rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 --RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred --HHHHHHHHHHhcCCCceEEEEe
Confidence 1345667778777777665443
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8e-10 Score=95.20 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=76.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC-CC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP-EG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p-~~ 253 (357)
..++..+. ..+..+|||||||+|..+..+++.. ++.+++++|+ +++++.+++. .+++++.+|.....+ .+
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34566665 6677899999999999999888875 4568899998 7888777652 479999999887433 33
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++....++.+ +.+.+.|||||++++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 9999987766542 35667899999998853
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.6e-10 Score=102.86 Aligned_cols=108 Identities=11% Similarity=0.202 Sum_probs=80.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC---CCCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD---SVPEG 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~p~~ 253 (357)
.+++.+. ......+||||||+|.++..+++.+|+..++++|+ +.+++.+.+ ..++.++.+|+.. .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 4555554 23345899999999999999999999999999998 667665543 2579999999754 45554
Q ss_pred --CEEEeccccccCChhH----HHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 --DAILMKWILHCWDDDH----CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~----~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|.|++.....+....+ ...+|+.++++|+|||.+.+..-
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9998765433211111 25899999999999999999664
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=92.38 Aligned_cols=98 Identities=14% Similarity=0.242 Sum_probs=75.0
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---CCCC
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---VPEG 253 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~p~~ 253 (357)
+..+. ..+..+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++. .++.++.+|+.+. .+..
T Consensus 33 l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 33 LSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 34455 5677899999999999999998764 5678999998 7787766431 4688888998762 2233
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
|.|++... ..+...+|+.+.+.|||||++++
T Consensus 112 ~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 112 FDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99988542 24567899999999999999986
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-09 Score=95.86 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=74.7
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEecc-----
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKW----- 260 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~----- 260 (357)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++. .+++++.+|+++..+. . |+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 8888877652 4699999999876554 3 9999851
Q ss_pred --------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 018366 261 --------ILHCWDD----------DHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 261 --------~lh~~~~----------~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.+++.|. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122211 2346889999999999999887
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=94.90 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=75.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC--C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP--E 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p--~ 252 (357)
..+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|. +++++.+++. .+++++.+|..+..+ .
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34555555 66778999999999999999998864 467888887 8888777642 578999999877333 2
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
. |+|++....++. .+.+.+.|+|||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 3 999987765544 34577899999999884
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=93.46 Aligned_cols=101 Identities=16% Similarity=0.255 Sum_probs=77.3
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC---CCCC-C
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD---SVPE-G 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~p~-~ 253 (357)
+++.++ ..+..+|||+|||+|.++..+++..|+.+++++|. +.+++.+++. .+++++.+|+.+ .... .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 455555 55678999999999999999998888889999998 8888776542 468999998865 2222 2
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|.+++.. ......+++++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6655421 13457899999999999999999764
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.9e-09 Score=91.17 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=73.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCC-C-CEEEeccccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPE-G-DAILMKWILH 263 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~-~-D~i~~~~~lh 263 (357)
..+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++. .++.++.+|+.+..+. . |+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4456799999999999999988763 347889998 7777765542 2478888998775544 3 9999864322
Q ss_pred cCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 264 CWDD-------------------DHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 264 ~~~~-------------------~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.-+. .....+++++.+.|||||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2111 124568899999999999999876543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-09 Score=102.73 Aligned_cols=131 Identities=15% Similarity=0.260 Sum_probs=94.7
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEecc----
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKW---- 260 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~---- 260 (357)
..+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++. +++.++.+|+++..+. . |+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 7788877642 4689999998875544 3 9999832
Q ss_pred ----------ccccCC------h----hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC
Q 018366 261 ----------ILHCWD------D----DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG 320 (357)
Q Consensus 261 ----------~lh~~~------~----~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
+..+.| . +....+++.+.+.|+|||.+++ |...
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-------------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-------------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC--------------------------
Confidence 111111 0 1235678889999999999876 3211
Q ss_pred CccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEE
Q 018366 321 GRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEF 355 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~ 355 (357)
...+.+.+++.+.||..+++.... +...++.+
T Consensus 272 ---~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 ---KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ---chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 124567788888999988776654 33445544
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=96.52 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC-CEEEecccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG-DAILMKWILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~-D~i~~~~~lh~ 264 (357)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. .++.+...|.....+.. |+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4579999999999999888765 4458899998 7777777652 24556656533322333 999986543
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+....+++++.+.|||||++++...
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3456899999999999999998654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=96.67 Aligned_cols=97 Identities=18% Similarity=0.291 Sum_probs=76.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC---CCCCC-CEEEecc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD---SVPEG-DAILMKW 260 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~---~~p~~-D~i~~~~ 260 (357)
+++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ .++++++.+|..+ ..+.. |+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 888887764 2679999999865 23334 9998742
Q ss_pred cccc--CChh-HHHHHHHHHHHhCCCCCEEEEE
Q 018366 261 ILHC--WDDD-HCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 261 ~lh~--~~~~-~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++. .+.. ...++++++++.|+|||++++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 222 1111 1369999999999999999984
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=89.60 Aligned_cols=103 Identities=16% Similarity=0.276 Sum_probs=74.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhCCCCCCceEEEcCCCCC---------CCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS---------VPE- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~p~- 252 (357)
++...+....+..+|||+|||+|.++..+++.+ +..+++++|+.+.. ..++++++.+|+.++ .+.
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 344445445677899999999999999999887 56789999984432 235688898998762 233
Q ss_pred C-CEEEeccccc---cCC------hhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 253 G-DAILMKWILH---CWD------DDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 253 ~-D~i~~~~~lh---~~~------~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
. |+|++....| .|. .+....+|+.+.+.|+|||++++.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 3 9999854322 111 122468999999999999999985
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=89.67 Aligned_cols=128 Identities=19% Similarity=0.144 Sum_probs=89.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCCCCC----CC-CEEEeccccc-
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFDSVP----EG-DAILMKWILH- 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~p----~~-D~i~~~~~lh- 263 (357)
+..+|||+|||+|.++..+++..|..+++++|+ +.+++.++++ .+++++.+|+++..+ .. |+|+++--..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 345899999999999999999999889999998 8888877653 346889999887433 23 9998764221
Q ss_pred -----cCCh------------------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC
Q 018366 264 -----CWDD------------------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG 320 (357)
Q Consensus 264 -----~~~~------------------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
..++ +-...+++.+.+.|+|||++++.... +
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~--~------------------------ 219 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE--R------------------------ 219 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--c------------------------
Confidence 1111 11347888888999999999974310 0
Q ss_pred CccCCHHHHHHHHHHcCCceeEEeecCCceeE
Q 018366 321 GRERTKKEFTELAIAAGFKHINFASCVCNLYI 352 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 352 (357)
..+++..++++.||...-... ...+.+
T Consensus 220 ----~~~~v~~~l~~~g~~~~~~~~-~~~~~~ 246 (251)
T TIGR03704 220 ----QAPLAVEAFARAGLIARVASS-EELYAT 246 (251)
T ss_pred ----hHHHHHHHHHHCCCCceeeEc-ccccce
Confidence 134567788889988544433 333443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-09 Score=91.43 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=69.3
Q ss_pred CCceEEEEcCCcch----HHHHHHhh----CC-CCeEEEeec-hHHHHhCCCC---------------------------
Q 018366 194 NVERLVDVGGGFGV----TLSMITSK----YP-QIKAVNFDL-PHVVQDAPSY--------------------------- 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~----~~~~l~~~----~p-~~~~~~~D~-~~~~~~a~~~--------------------------- 236 (357)
+..+|+..||++|. +++.+.+. .+ +.++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999994 33333441 12 457788888 7788877641
Q ss_pred -------CCceEEEcCCCC-CCCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 237 -------AGVEHVGGNMFD-SVPE-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 237 -------~~v~~~~~D~~~-~~p~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.+|.|..+|+.+ +.+. . |+|+|.|||-+++++...++++++++.|+|||+|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 358999999998 3333 3 999999999999999999999999999999999999543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-09 Score=78.58 Aligned_cols=92 Identities=23% Similarity=0.333 Sum_probs=74.5
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC------CCCCceEEEcCCCCCC---CCC-CEEEeccccccC
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------SYAGVEHVGGNMFDSV---PEG-DAILMKWILHCW 265 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~D~~~~~---p~~-D~i~~~~~lh~~ 265 (357)
+|+|+|||+|..+..+++ .+..+++++|. +..+..++ ...++.+..+|+.+.. +.. |+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 66778999998 55555443 1256889999988832 233 999999999984
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
.+....+++++.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 367789999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=93.96 Aligned_cols=106 Identities=15% Similarity=0.066 Sum_probs=75.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG-- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-- 253 (357)
.++.... +++..+|||+|||+|.++.+.+.. ..+++++|+ +.++..++.. ..+.+..+|+.+ +.+..
T Consensus 173 ~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 173 AMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 3444333 567789999999999998886654 567888898 7777765532 347889999987 55433
Q ss_pred CEEEeccccc-------cCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 DAILMKWILH-------CWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 D~i~~~~~lh-------~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++.--.. +...+...++|+.+++.|||||+++++.+
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 9999853211 11113357899999999999999998653
|
This family is found exclusively in the Archaea. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=90.84 Aligned_cols=126 Identities=20% Similarity=0.266 Sum_probs=87.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCce----EEEcCCCCCCC--CCCEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVE----HVGGNMFDSVP--EGDAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~----~~~~D~~~~~p--~~D~i~~~~~l 262 (357)
.++.+|||+|||+|.++++.++.... +++++|+ |..++.+++. ++|. ....+...... ..|+|+++= |
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 36789999999999999998887543 6888888 7777776653 3444 22223222112 229988643 4
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
= +-...+...+++.+||||++++.-.... ..+.+.+.+.++||.+++
T Consensus 239 A----~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 239 A----EVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVVE 285 (300)
T ss_pred H----HHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEeE
Confidence 2 3346889999999999999999553211 255677888999999999
Q ss_pred EeecCCceeEE
Q 018366 343 FASCVCNLYIM 353 (357)
Q Consensus 343 ~~~~~~~~~vi 353 (357)
+....+...++
T Consensus 286 ~~~~~eW~~i~ 296 (300)
T COG2264 286 VLEREEWVAIV 296 (300)
T ss_pred EEecCCEEEEE
Confidence 88876555543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-09 Score=90.55 Aligned_cols=147 Identities=13% Similarity=0.178 Sum_probs=101.0
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCce-EEEc---CCCCCC-CCC-C
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVE-HVGG---NMFDSV-PEG-D 254 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~-~~~~---D~~~~~-p~~-D 254 (357)
..+++...+ ..+..++||+|||||..+..+...-. +.+++|+ ..|++.+.+++-.. +... +|.... ++. |
T Consensus 114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 345555555 44578999999999999888877654 4667888 78999988753211 1111 233322 223 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|+...||.++ -+...++.-+...|+|||.+.+.-...+.+.... +.-. -...++..-+++.++
T Consensus 191 Li~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~--------l~ps------~RyAH~~~YVr~~l~ 254 (287)
T COG4976 191 LIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFV--------LGPS------QRYAHSESYVRALLA 254 (287)
T ss_pred chhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCCee--------cchh------hhhccchHHHHHHHH
Confidence 99999999998 5677899999999999999998766655532110 0000 111235677889999
Q ss_pred HcCCceeEEeecC
Q 018366 335 AAGFKHINFASCV 347 (357)
Q Consensus 335 ~aGf~~~~~~~~~ 347 (357)
..||.++++.+++
T Consensus 255 ~~Gl~~i~~~~tt 267 (287)
T COG4976 255 ASGLEVIAIEDTT 267 (287)
T ss_pred hcCceEEEeeccc
Confidence 9999999987764
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-08 Score=90.17 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=76.4
Q ss_pred CCceEEEEcCCcch----HHHHHHhhCC----CCeEEEeec-hHHHHhCCCC----------------------------
Q 018366 194 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 236 (357)
+..+|...||+||. +++.+.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999994 3444444332 467888998 7777766531
Q ss_pred ---------CCceEEEcCCCC-CCC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 237 ---------AGVEHVGGNMFD-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 237 ---------~~v~~~~~D~~~-~~p--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.+|.|..+|+.+ +.| .. |+|+|.++|.+++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 237888999988 444 33 99999999999999999999999999999999988854
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-08 Score=86.01 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=82.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------------------CCCceEEEcCCCC-CC-C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFD-SV-P 251 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~-~~-p 251 (357)
.+..+||+.|||.|.-+..|++. +.+++++|+ +..++.+.+ ..++++.++|+++ +. +
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999987 567999998 666666311 1468999999998 32 1
Q ss_pred ---CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 252 ---EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 252 ---~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.. |+|+=..+|++++++...+..+++.++|+|||.++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 12 99999999999999999999999999999999999887643
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=87.29 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=92.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCCCC-CEEEeccccccCChhHHHH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEG-DAILMKWILHCWDDDHCLR 272 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~~~~~~~~ 272 (357)
...++||||+|.|..+..++..+..+.++... +.|..+.++ .+++++..|-....+.. |+|.|.|+|... ++...
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc--~~P~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRC--DRPLT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhcc--CCHHH
Confidence 45689999999999999999999886666666 778777665 33455444322222223 999999999988 55679
Q ss_pred HHHHHHHhCCCCCEEEEEeec--c---CCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 273 ILKNCYKAIPDNGKVIVMNSI--V---PEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 273 ~L~~~~~~LkpgG~l~i~e~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
+|+.++++|+|+|++++.=.. . +.++ +. ..+....++ ......+-....+-+.|+.+||++++....+
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~-g~-~~~P~e~l~-----~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGG-GK-SNRPSELLP-----VKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCC-CC-CCCchhhcC-----CCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 999999999999999874321 1 1111 00 000011111 0101111122334488999999999887765
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=85.98 Aligned_cols=140 Identities=18% Similarity=0.233 Sum_probs=99.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC---C---------------CCCceEEEc
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---S---------------YAGVEHVGG 244 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~~v~~~~~ 244 (357)
.+++.+. .....+||..|||.|.-+..|++. +..++++|+ +..++.+. . ..+|++.++
T Consensus 28 ~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 28 EYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHT-TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHhcC-CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 3444444 456679999999999999999987 568999999 66666641 1 136889999
Q ss_pred CCCC-CCCC--C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC
Q 018366 245 NMFD-SVPE--G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG 320 (357)
Q Consensus 245 D~~~-~~p~--~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
|+++ +... . |+|+=..+|+.++++...+..+++.++|+|||+++++....+..... ..
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~------------------GP 166 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME------------------GP 166 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS------------------SS
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC------------------Cc
Confidence 9999 2222 2 99999999999999999999999999999999966655544332100 01
Q ss_pred CccCCHHHHHHHHHHcCCceeEEee
Q 018366 321 GRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
....+.+++.++|. .+|++.....
T Consensus 167 Pf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 167 PFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp S----HHHHHHHHT-TTEEEEEEEE
T ss_pred CCCCCHHHHHHHhc-CCcEEEEEec
Confidence 11247899999999 7898776644
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-09 Score=83.22 Aligned_cols=96 Identities=22% Similarity=0.317 Sum_probs=74.8
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-C--CCCC--CEEEecccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-S--VPEG--DAILMKWIL 262 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~--~p~~--D~i~~~~~l 262 (357)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. ..+++++.+|+.+ . .+.. |+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 778899998 777776654 2579999999887 2 4443 999997766
Q ss_pred ccCC------hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 263 HCWD------DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 263 h~~~------~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+... .+....+++++.+.|||||.++++-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6432 12346899999999999999998653
|
... |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.5e-09 Score=83.16 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=89.3
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------C-CCceEEEcCCCCC--CCCC-CEEEeccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------Y-AGVEHVGGNMFDS--VPEG-DAILMKWILH 263 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~D~~~~--~p~~-D~i~~~~~lh 263 (357)
..+|||+|||+|.++..|++..-....+++|. +..++.|+. . +.|+|...|+.+| .+.. |+|+=..++.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999998765555777776 666655543 1 3499999999984 2233 7775444433
Q ss_pred cC------ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 264 CW------DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 264 ~~------~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
.+ +.......+..+.+.|+|||+++|..- -+|.+|+.+.++.-|
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENFN 197 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcCC
Confidence 22 223335678889999999999999331 147889999999999
Q ss_pred CceeEEeecC
Q 018366 338 FKHINFASCV 347 (357)
Q Consensus 338 f~~~~~~~~~ 347 (357)
|.....+|.+
T Consensus 198 f~~~~tvp~p 207 (227)
T KOG1271|consen 198 FEYLSTVPTP 207 (227)
T ss_pred eEEEEeeccc
Confidence 9998888775
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.8e-09 Score=92.95 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=73.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCC--CCC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDS--VPE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~--~p~-~-D~i 256 (357)
+++.+||+||||+|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|.... .+. . |+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3567999999999999999998655557888888 888887764 35799999998762 222 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCCEEEEE
Q 018366 257 LMKWILHCWDDDH--CLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 257 ~~~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++-..-+..+... ..++++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854433322222 368899999999999998874
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=87.31 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=72.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC--C-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE--G- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~--~- 253 (357)
.++..+. ..+..+|||+|||+|..+..+++... +++++|. +++++.+++. .+++++.+|..+..+. .
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 4455555 56778999999999999987777653 6788887 7777766542 4689999998774432 2
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++...++++ .+.+.+.|+|||++++.-
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence 999998776654 345678999999998854
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.9e-09 Score=92.53 Aligned_cols=143 Identities=18% Similarity=0.247 Sum_probs=92.8
Q ss_pred HHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceE
Q 018366 170 YHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEH 241 (357)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~ 241 (357)
|..+-+..++..++.+.+ +. .+..+|||+|||+|.++...++.... +++++|+ |..++.++++ .++.+
T Consensus 140 FGTG~H~TT~lcl~~l~~-~~--~~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELLEK-YV--KPGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp S-SSHCHHHHHHHHHHHH-HS--STTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred ccCCCCHHHHHHHHHHHH-hc--cCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 333334444444444433 32 34579999999999999988887543 7888888 7777776652 34433
Q ss_pred EEcCCCCCCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcC
Q 018366 242 VGGNMFDSVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDG 319 (357)
Q Consensus 242 ~~~D~~~~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (357)
.. ..+.+.. |+|+.+-.- +-...+...+.+.|+|||++++.-....
T Consensus 216 --~~-~~~~~~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~~------------------------ 263 (295)
T PF06325_consen 216 --SL-SEDLVEGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGILEE------------------------ 263 (295)
T ss_dssp --SC-TSCTCCS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEGG------------------------
T ss_pred --EE-ecccccccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccccHH------------------------
Confidence 21 1233323 998864432 4456888899999999999999554321
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEeecCCceeEEE
Q 018366 320 GGRERTKKEFTELAIAAGFKHINFASCVCNLYIME 354 (357)
Q Consensus 320 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie 354 (357)
..+++.+.+++ ||+.++.....+..+++-
T Consensus 264 -----~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~ 292 (295)
T PF06325_consen 264 -----QEDEVIEAYKQ-GFELVEEREEGEWVALVF 292 (295)
T ss_dssp -----GHHHHHHHHHT-TEEEEEEEEETTEEEEEE
T ss_pred -----HHHHHHHHHHC-CCEEEEEEEECCEEEEEE
Confidence 24567778876 999998888766666554
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.3e-08 Score=85.61 Aligned_cols=128 Identities=17% Similarity=0.223 Sum_probs=90.0
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-CEEEecccc--c---
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-DAILMKWIL--H--- 263 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D~i~~~~~l--h--- 263 (357)
+|||+|||+|..+..++...|+..+++.|+ |..++.|+++ .++.++.+|.+++.+.. |+|+++=-- .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 8888777652 34566667888866555 888764210 0
Q ss_pred cC--------------C----hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 264 CW--------------D----DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 264 ~~--------------~----~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
+. . -+-...++..+.+.|+|||.+++ +... -.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~-----------------------------~q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL-----------------------------TQ 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC-----------------------------Cc
Confidence 00 0 12346788888899999777776 3211 02
Q ss_pred HHHHHHHHHHcC-CceeEEeecC-CceeEEE
Q 018366 326 KKEFTELAIAAG-FKHINFASCV-CNLYIME 354 (357)
Q Consensus 326 ~~e~~~ll~~aG-f~~~~~~~~~-~~~~vie 354 (357)
.+.+.++|.+.| |..+...... +...++.
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~ 273 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFGRDRVVL 273 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCceEEEE
Confidence 567889999999 6666665554 3344443
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-08 Score=84.80 Aligned_cols=106 Identities=17% Similarity=0.264 Sum_probs=85.3
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHh-hCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC-CC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITS-KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS-VP 251 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-~p 251 (357)
+..|+..+. .++..+|+|.|.|+|.++..|+. ..|.-+++.+|. ++..+.|+++ ++|.+..+|+.+. .+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 445666666 88899999999999999999996 567788999998 7777777652 4599999999883 33
Q ss_pred CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 252 EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 252 ~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
+. |.|++ +. ++..++|.++.++|+|||.+++.-++.+
T Consensus 162 ~~vDav~L-----Dm--p~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DL--PDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cC--CChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 34 99887 55 4556999999999999999999777654
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.8e-08 Score=84.71 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=80.8
Q ss_pred CCceEEEEcCCcc----hHHHHHHhhCC-----CCeEEEeec-hHHHHhCCCC---------------------------
Q 018366 194 NVERLVDVGGGFG----VTLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY--------------------------- 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G----~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 236 (357)
+.-+|.-.||+|| .+++.+.+..| +.++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4789999999999 45666677775 467788888 7788877640
Q ss_pred --------CCceEEEcCCCCC--CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 237 --------AGVEHVGGNMFDS--VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 237 --------~~v~~~~~D~~~~--~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
..|.|..+|.+++ .+.. |+|+|.|||-+++.+.-.+++++.+..|+|||+|++-..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 2388999999984 3444 999999999999999899999999999999999999543
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=87.41 Aligned_cols=152 Identities=21% Similarity=0.336 Sum_probs=88.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCc--chHHHHHH-hhCCCCeEEEeec-hHHHHhCCC----CCC--ceEEEcCCCCC---
Q 018366 183 ERILEHYEGFQNVERLVDVGGGF--GVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPS----YAG--VEHVGGNMFDS--- 249 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~--G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~----~~~--v~~~~~D~~~~--- 249 (357)
...++.+..-.+...+||||||- -..+.+++ +..|+.+++-+|. |-++..++. .++ ..++.+|+.++
T Consensus 57 ~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~i 136 (267)
T PF04672_consen 57 RRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAI 136 (267)
T ss_dssp HHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHH
T ss_pred HHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHH
Confidence 44555554223778999999993 33455554 4579999999998 777777765 244 88999999872
Q ss_pred C--CC--C-------CEEEeccccccCCh-hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh
Q 018366 250 V--PE--G-------DAILMKWILHCWDD-DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR 317 (357)
Q Consensus 250 ~--p~--~-------D~i~~~~~lh~~~~-~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (357)
+ |. + =.+++..+||+.+| ++...+++.++++|.||++|+|...+.+..+ .............
T Consensus 137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p-----~~~~~~~~~~~~~- 210 (267)
T PF04672_consen 137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP-----ERAEALEAVYAQA- 210 (267)
T ss_dssp HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH-----HHHHHHHHHHHHC-
T ss_pred hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH-----HHHHHHHHHHHcC-
Confidence 1 11 1 36889999999987 7889999999999999999999998764321 1111122222222
Q ss_pred cCCCccCCHHHHHHHHHHcCCceeE
Q 018366 318 DGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 318 ~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
......||.+|+.++|. ||+.++
T Consensus 211 ~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 211 GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp CS----B-HHHHHHCCT--TSEE-T
T ss_pred CCCceecCHHHHHHHcC--CCccCC
Confidence 23567899999999998 888764
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=85.94 Aligned_cols=93 Identities=25% Similarity=0.332 Sum_probs=68.1
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEE-------cCCCCCC--CCC-CEEEecccccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVG-------GNMFDSV--PEG-DAILMKWILHC 264 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-------~D~~~~~--p~~-D~i~~~~~lh~ 264 (357)
..++|+|||+|..++.+++.+.+ +++.|. +.|++.+++.+++.+.. .++.+-. +.. |+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 48999999999888888888654 666776 89999998875544322 2222211 223 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCC-EEEEEeec
Q 018366 265 WDDDHCLRILKNCYKAIPDNG-KVIVMNSI 293 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG-~l~i~e~~ 293 (357)
++ ..++.+.++++|||.| .+++....
T Consensus 113 Fd---le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 113 FD---LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hc---hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 84 4689999999998765 66665543
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=90.53 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=73.4
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------------CCCceEEEcCCCCCC---CCC-C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFDSV---PEG-D 254 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~~~---p~~-D 254 (357)
.++.+||+||||+|..+..+++..+..+++.+|+ +++++.|++ .+|++++.+|..+.+ ++. |
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 3567999999999999999998655568888888 888887773 368999999988722 223 9
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 255 AILMKWILH---CWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 255 ~i~~~~~lh---~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
+|++-..-. ....-...++++.+++.|+|||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999863210 011122357999999999999998885
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-08 Score=89.38 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=71.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~-~-D~i 256 (357)
+++.+||+||||.|..++.+++..+-.+++.+|+ +.+++.+++ .+|++++.+|... ..+. . |+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4578999999999999999987633356788887 777777655 2589999999764 3333 3 999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCCEEEEE
Q 018366 257 LMKWILHCWDDD--HCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 257 ~~~~~lh~~~~~--~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++-..-++.+.. -..++++.+++.|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 985433322211 1357899999999999998763
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7e-08 Score=94.11 Aligned_cols=98 Identities=19% Similarity=0.289 Sum_probs=73.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCC-------------CCCceEEEcCCCC---CCCCC-
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFD---SVPEG- 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~---~~p~~- 253 (357)
+++.+|||||||+|..+.++++. |. .+++.+|+ +++++.+++ .+|++++.+|..+ ..++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 35679999999999999999974 55 68888888 889888776 1589999999877 22334
Q ss_pred CEEEeccccccCChh---HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 DAILMKWILHCWDDD---HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 D~i~~~~~lh~~~~~---~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++...-+..+.. -..++++++++.|||||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999986433221111 12468999999999999988853
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-08 Score=82.90 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=93.9
Q ss_pred HHHhhcc-cCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----------C-------------
Q 018366 184 RILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------A------------- 237 (357)
Q Consensus 184 ~i~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~------------- 237 (357)
..++.++ .+-.+..+|||||.+|.++..+++.+....++++|+ +..|..|++. .
T Consensus 47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~ 126 (288)
T KOG2899|consen 47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGP 126 (288)
T ss_pred hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccc
Confidence 3444443 244678999999999999999999998888999999 7778877652 0
Q ss_pred -----------------Cce-------EEEcCCCC-CCCCCCEEEec----cccccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 238 -----------------GVE-------HVGGNMFD-SVPEGDAILMK----WILHCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 238 -----------------~v~-------~~~~D~~~-~~p~~D~i~~~----~~lh~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
++. +...|+.+ ..|..|+|+|- ++--+|.|+-...+++++++.|.|||+|+
T Consensus 127 is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 127 ISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred ccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 111 11122332 12233888663 33335889999999999999999999998
Q ss_pred EEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc--CCceeE
Q 018366 289 VMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA--GFKHIN 342 (357)
Q Consensus 289 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a--Gf~~~~ 342 (357)
+ |+ .+-. ....-........+ ..-.-...++.+..++.+. ||+.+.
T Consensus 207 v-EP----QpWk-sY~kaar~~e~~~~--ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 207 V-EP----QPWK-SYKKAARRSEKLAA--NYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred E-cC----CchH-HHHHHHHHHHHhhc--CccceecCHHHHHhhhhhhhhheeeec
Confidence 8 32 1100 00000001100011 1122345789999999887 666544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.6e-08 Score=80.12 Aligned_cols=99 Identities=17% Similarity=0.318 Sum_probs=77.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCCCCC-C-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDSVPE-G- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~p~-~- 253 (357)
..++..+. +++..+|||||||+|..+.-+++... +++.+++ ++..+.|++ ..+|.++.+|-...+|. +
T Consensus 62 A~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 62 ARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 45667676 78889999999999999999888865 6677776 777777765 25699999999886664 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|.|+.....-..|+ .+.+.|||||++++-.-
T Consensus 139 yD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99999887766643 44568999999999554
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.7e-08 Score=87.45 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=73.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC---CCCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS---VPEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~p~~-D~i~ 257 (357)
+++.+||+||||+|..+..+++..+..+++.+|+ +.+++.+++ .++++++.+|..+- .+.. |+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999998765667888887 777776654 25788888887651 2233 9999
Q ss_pred eccccccCChhH--HHHHHHHHHHhCCCCCEEEEE
Q 018366 258 MKWILHCWDDDH--CLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 258 ~~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~ 290 (357)
+...-+.-+... ..++++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865533222222 468899999999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.8e-08 Score=88.34 Aligned_cols=99 Identities=20% Similarity=0.313 Sum_probs=72.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCC------CCCceEEEcCCCCCCCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDSVPE--G 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~p~--~ 253 (357)
.+++.++ .++..+|||||||+|.++..+++..+. ..++++|. +++++.+++ ..++.++.+|..+..+. .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4555555 556789999999999999999998764 46888888 777776654 24688999998763332 2
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++...+++. ...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 999987665443 234567899999988853
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-08 Score=83.74 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=68.1
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC----CCCC-C-CEEEeccccc
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD----SVPE-G-DAILMKWILH 263 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~----~~p~-~-D~i~~~~~lh 263 (357)
.+||||||.|.++..++..+|+..++++|+ ...+..+.. ..++.++.+|+.. -++. . |-|++..-=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 899999999999999999999999999998 555544432 3789999999877 1333 3 6666533221
Q ss_pred cCChhH------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 264 CWDDDH------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 264 ~~~~~~------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+....+ ...+|+.+.+.|+|||.|.+.+-
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 111111 25899999999999999988663
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-08 Score=64.41 Aligned_cols=49 Identities=55% Similarity=0.791 Sum_probs=40.7
Q ss_pred HHHHHHHHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHh
Q 018366 36 MATQAAIQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLV 84 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~ 84 (357)
++|++|+++||||.|.+.| +.|++||+.++...+|..+..++|+||.|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999999875 999999999999225556778999999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-07 Score=81.79 Aligned_cols=97 Identities=11% Similarity=0.212 Sum_probs=73.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCC--------CCC-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSV--------PEG- 253 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~--------p~~- 253 (357)
..++.+|||||||+|..+..++...+ +.+++.+|. ++.++.+++. ++++++.+|..+.+ ...
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44678999999999999999988765 678999998 7777776652 57999999987621 123
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+|++- ...+....++..+.+.|+|||.+++-+..
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 999873 23355668899999999999987774443
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=79.14 Aligned_cols=102 Identities=10% Similarity=0.219 Sum_probs=70.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCC--C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~--D 254 (357)
+.+++.++ ..+..+|||||||+|.++..++++ ..+++++|. +.+++.+++ .++++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 45666666 566779999999999999999988 457888887 667776654 2579999999988 55543 8
Q ss_pred EEEeccccccCChhHHHHHHHHHHHh--CCCCCEEEEEee
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKA--IPDNGKVIVMNS 292 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~--LkpgG~l~i~e~ 292 (357)
.|+++-- ++.+. .++.++.+. +.++|.+++-..
T Consensus 80 ~vi~n~P-y~~~~----~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 80 KVVGNLP-YNIST----PILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EEEECCC-cccHH----HHHHHHHhcCCCcceEEEEEEHH
Confidence 7776544 44433 334444433 346677766443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-08 Score=83.77 Aligned_cols=100 Identities=19% Similarity=0.327 Sum_probs=72.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~ 253 (357)
..+++.+. +++..+|||||||+|..+.-++.... ..+++.+|. +...+.+++. .+|.++.+|.....+. +
T Consensus 62 a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a 140 (209)
T PF01135_consen 62 ARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA 140 (209)
T ss_dssp HHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred HHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence 45777777 77889999999999999999988753 335778887 7777777652 5799999998775554 2
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|.|++.......|. .+.+.|++||+|++--
T Consensus 141 pfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 141 PFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEE
T ss_pred CcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEE
Confidence 99999887765432 3556789999999843
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-07 Score=88.11 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=78.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC---CC-CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS---VP-EG 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~p-~~ 253 (357)
.++..++ ..+..+|||+|||+|..+..+++..++.+++++|. +.+++.+++. .++.++.+|..+. .+ ..
T Consensus 235 ~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 235 LAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 3444454 55678999999999999999999988788999998 7777776542 2468899998762 22 23
Q ss_pred -CEEEe----cc--ccc-------cCChhH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 254 -DAILM----KW--ILH-------CWDDDH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 254 -D~i~~----~~--~lh-------~~~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|.|++ +. ++. ....++ ..++|+++.+.|||||++++.+...
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99984 22 111 112222 2478999999999999999877543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-07 Score=72.20 Aligned_cols=112 Identities=18% Similarity=0.279 Sum_probs=88.8
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCC-C-----CC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFD-S-----VP 251 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~-----~p 251 (357)
.++.+++.++ +..+.-|||+|.|||.++.+++++. ++...+.++. ++......+ .+.++++.||.++ . .+
T Consensus 36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 3456677677 7778899999999999999999875 3444555554 666665544 5888999999887 2 22
Q ss_pred CC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 252 EG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 252 ~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.. |.|++.--+-.+|.....++|+++...|++||.++-....
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 22 9999999999999888999999999999999999987765
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.9e-07 Score=93.47 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=86.0
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----------------------CCceEEEcCCCCCCC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------------------AGVEHVGGNMFDSVP 251 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~D~~~~~p 251 (357)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++ .|++++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999999999889999999 7777766321 369999999988543
Q ss_pred C---C-CEEEeccc--c--------------------ccC----------Chh----HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 252 E---G-DAILMKWI--L--------------------HCW----------DDD----HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 252 ~---~-D~i~~~~~--l--------------------h~~----------~~~----~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. . |+|+++=- . |.. .++ -..++++.+.+.|+|||.+++ |
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence 2 2 88875321 0 100 011 125677777889999998775 3
Q ss_pred eccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH-HHHHHcCCceeEEeec
Q 018366 292 SIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT-ELAIAAGFKHINFASC 346 (357)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~~~~~~~ 346 (357)
... . ..+.+. ++|++.||+.++++..
T Consensus 278 iG~---------------------------~--q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGG---------------------------R--PGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECc---------------------------c--HHHHHHHHHHHHCCCCeeEEeee
Confidence 211 1 134566 5888889988887664
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-07 Score=80.53 Aligned_cols=128 Identities=14% Similarity=0.252 Sum_probs=89.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHh-hCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-CCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITS-KYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-SVP- 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~p- 251 (357)
..|+..++ ..++.+|||.|.|+|.++..|++ ..|.-++.-+|. ++..+.|++ ..+|.+...|+.+ .++
T Consensus 30 ~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 30 SYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 34666666 78889999999999999999996 558889999998 666666654 2579999999965 332
Q ss_pred ---CC-CEEEeccccccCChhHHHHHHHHHHHhC-CCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCH
Q 018366 252 ---EG-DAILMKWILHCWDDDHCLRILKNCYKAI-PDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTK 326 (357)
Q Consensus 252 ---~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L-kpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 326 (357)
.. |.|++ ++|++ ..++..+.++| ||||++++.-+.++. .
T Consensus 109 ~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v 152 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDP--WEAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------V 152 (247)
T ss_dssp T-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------H
T ss_pred cccCcccEEEE-----eCCCH--HHHHHHHHHHHhcCCceEEEECCCHHH-----------------------------H
Confidence 23 98887 55444 47899999999 899999997765432 1
Q ss_pred HHHHHHHHHcCCceeEEeecC
Q 018366 327 KEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~~ 347 (357)
......|++.||..+++....
T Consensus 153 ~~~~~~L~~~gf~~i~~~Evl 173 (247)
T PF08704_consen 153 QKTVEALREHGFTDIETVEVL 173 (247)
T ss_dssp HHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHCCCeeeEEEEEE
Confidence 122356677899988876653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.1e-07 Score=87.30 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=75.6
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-CEEEec--
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G-DAILMK-- 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~-D~i~~~-- 259 (357)
..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++. .+|+++.+|+.+..+. . |+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44567999999999999998888654 458899998 7777766542 3588999998773333 3 999851
Q ss_pred --c--cc-------ccCChhHH-------HHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 260 --W--IL-------HCWDDDHC-------LRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 260 --~--~l-------h~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
. ++ ++++.++. .++|+++.+.|||||+++..+....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1 11 12333322 3689999999999999999886553
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.4e-07 Score=87.40 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=79.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C-CceEEEcCCCC-CC--CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFD-SV--PE 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~-~~--p~ 252 (357)
.++..++ ..+..+|||+|||+|..+..+++..++.+++++|+ +++++.+++. . ++.+..+|... +. +.
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 3444455 55678999999999999999999888778999998 7777766542 1 23336667654 22 22
Q ss_pred -C-CEEEe------ccccccCCh-------hH-------HHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 253 -G-DAILM------KWILHCWDD-------DH-------CLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 253 -~-D~i~~------~~~lh~~~~-------~~-------~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
. |.|++ ..+++..++ ++ ..++|+++.+.|||||+|+..+....
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 99984 345655433 11 35899999999999999999877654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-07 Score=87.06 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=77.2
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC---CCCC
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS---VPEG 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~p~~ 253 (357)
+...+. ..+..+|||+|||+|..+..+++.. ++.+++++|+ +.+++.+++. .+++++.+|+.+. ++..
T Consensus 242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~ 320 (444)
T PRK14902 242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEK 320 (444)
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhccc
Confidence 333444 4566899999999999999999886 6678999998 7777666542 3589999998762 3333
Q ss_pred -CEEEecc------ccccC-------ChhH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 254 -DAILMKW------ILHCW-------DDDH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 254 -D~i~~~~------~lh~~-------~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|+|++.- ++.+. +..+ ..++|+.+.+.|||||+|+......
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 9998632 12111 1122 2468999999999999999765443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-07 Score=85.72 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=71.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------------C----CceEEEcCCCCC-----CC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------A----GVEHVGGNMFDS-----VP 251 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~----~v~~~~~D~~~~-----~p 251 (357)
+..+|||+|||.|.=+.......+. .++++|+ +..++.|+++ . ...++.+|.+.. ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~-~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK-HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC-EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 5689999999999988888877543 7899998 5666666431 1 245778887651 22
Q ss_pred -C--C-CEEEeccccccC--ChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 252 -E--G-DAILMKWILHCW--DDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 252 -~--~-D~i~~~~~lh~~--~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. . |+|.|...||+. +.+.+..+|+++.+.|+|||+++...+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2 3 999999999983 456677899999999999999998654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.3e-07 Score=76.96 Aligned_cols=92 Identities=8% Similarity=0.043 Sum_probs=68.5
Q ss_pred CceEEEEcCCcchHHHHHHhhC---CCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC-CEEEeccccccCCh
Q 018366 195 VERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG-DAILMKWILHCWDD 267 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~~~ 267 (357)
..+|||+|||+|.++..++++. +...++++|+ +.+++.+++. .++.++.+|+.. +.+.. |+|+++=-.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 4699999999999999998874 3567888888 8888888764 678999999987 43333 99998765552221
Q ss_pred ----------hHHHHHHHHHHHhCCCCCE
Q 018366 268 ----------DHCLRILKNCYKAIPDNGK 286 (357)
Q Consensus 268 ----------~~~~~~L~~~~~~LkpgG~ 286 (357)
.-...+++++.++++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1234688999986666553
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=73.17 Aligned_cols=120 Identities=16% Similarity=0.222 Sum_probs=89.6
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCC-CCCC---C--CEEEeccccccCChh
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD-SVPE---G--DAILMKWILHCWDDD 268 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~---~--D~i~~~~~lh~~~~~ 268 (357)
..++|||||=+...... .++-..++-+|+.+. . -.+...||++ |+|. . |+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~------~--~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ------H--PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC------C--CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999975554443 244456788886331 1 2456689998 7773 2 999999999999955
Q ss_pred -HHHHHHHHHHHhCCCCCE-----EEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 269 -HCLRILKNCYKAIPDNGK-----VIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 269 -~~~~~L~~~~~~LkpgG~-----l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
+.-++++++++.|+|+|. |+++-+.. .+ .+.+..+.+.|..+++..||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~---------------------Cv-~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP---------------------CV-TNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch---------------------Hh-hcccccCHHHHHHHHHhCCcEEEE
Confidence 455999999999999999 77765321 11 277778999999999999999988
Q ss_pred EeecC
Q 018366 343 FASCV 347 (357)
Q Consensus 343 ~~~~~ 347 (357)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 86653
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.2e-07 Score=85.77 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=78.9
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C----CC
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S----VP 251 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~----~p 251 (357)
+...+. ..+..+|||+|||+|..+..+++... ..+++.+|+ +++++.+++. .+|+++.+|..+ + ..
T Consensus 244 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 244 VAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence 334444 45668999999999999999998864 458899998 7777766542 458899999876 2 12
Q ss_pred C-C-CEEEec------cccccCCh-------hH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 252 E-G-DAILMK------WILHCWDD-------DH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 252 ~-~-D~i~~~------~~lh~~~~-------~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
. . |.|++- .++++.++ ++ -.++|+++.+.|||||+|+..+...
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2 3 999862 35554433 11 3588999999999999999877544
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-07 Score=76.39 Aligned_cols=94 Identities=15% Similarity=0.318 Sum_probs=69.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCc--eEEEcCCCC--CCCCC--CEEEecccccc--
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGV--EHVGGNMFD--SVPEG--DAILMKWILHC-- 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v--~~~~~D~~~--~~p~~--D~i~~~~~lh~-- 264 (357)
...-|||||||+|..+..+... +...+++|+ |+|++.+.+ ..+ .++-+|+-+ |++.+ |-+++...+.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3678999999999988887765 467899999 999998875 222 467788877 44444 87765544432
Q ss_pred -------CChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 265 -------WDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 265 -------~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
.|......++..++..|++|++-++.
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 23444567888999999999998874
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-06 Score=71.78 Aligned_cols=99 Identities=13% Similarity=0.240 Sum_probs=78.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEE-cCCCCCC----CCC-CEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVG-GNMFDSV----PEG-DAI 256 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~-~D~~~~~----p~~-D~i 256 (357)
.+++++|||||.+.|.-+..++...| +.+.+.+|+ ++..+.|++. ++|+++. +|..+.+ .+. |+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 888999998 8888888762 5688888 5776621 223 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
++ +....+.+++|..+.+.|+|||.+++-+...+
T Consensus 137 FI-----DadK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FI-----DADKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EE-----eCChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 87 33446678999999999999998877554443
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-06 Score=74.54 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=74.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCC--------CCC-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSV--------PEG- 253 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~--------p~~- 253 (357)
..++.+|||||+++|..+..++...| +.+++.+|. ++..+.|++ .++|+++.+|..+.+ +..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45678999999999999999998775 557888887 767776654 258999999987621 123
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+|++- -+..+....++.+.+.|+|||.|++-+..
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 988873 34466789999999999999997774443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.6e-07 Score=77.60 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=69.4
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC----CCCC-C-CEEEecccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD----SVPE-G-DAILMKWIL 262 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~----~~p~-~-D~i~~~~~l 262 (357)
..+||||||.|.++..+++.+|+..++++++ ...+..+.+ ..++.++++|... -.++ . |-|++...=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 4899999999999999999999999999998 444443322 2488999999776 2344 3 666553321
Q ss_pred ccCChhH------HHHHHHHHHHhCCCCCEEEEEe
Q 018366 263 HCWDDDH------CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 263 h~~~~~~------~~~~L~~~~~~LkpgG~l~i~e 291 (357)
-+..... ...+|+.+.+.|+|||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 1111011 2489999999999999999965
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=77.72 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=73.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCC--CCCEEEec-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVP--EGDAILMK- 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p--~~D~i~~~- 259 (357)
..+..+|||+|||+|..+..+++...+ ..++.+|+ +.+++.+++. .+|+++..|... +.. ..|.|++-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 456679999999999999999987753 57899998 7777666542 457888888765 222 23988752
Q ss_pred -----cccc-------cCChhHH-------HHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 260 -----WILH-------CWDDDHC-------LRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 260 -----~~lh-------~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
.++. .+.+++. .++|+++.+.|||||+|+...-...
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 1222 1232222 4699999999999999987765543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=81.98 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C-C-CCC-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S-V-PEG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~-~-p~~-D~i~~~ 259 (357)
..+..+|||+|||+|..+..+++.. +..+++.+|+ +.+++.+++. .+++++.+|..+ + . +.. |.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5567899999999999999999876 4568999998 7777776542 357888999865 2 2 223 998852
Q ss_pred ------ccccc-------CChhH-------HHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 260 ------WILHC-------WDDDH-------CLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 260 ------~~lh~-------~~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
.++.. ++.++ -.++|.++.+.|||||+++...-...
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 22222 22211 25789999999999999988776554
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=77.14 Aligned_cols=97 Identities=21% Similarity=0.324 Sum_probs=75.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~~-D~i~ 257 (357)
+.+++||-||+|.|..++++++..+--+++.+|+ +.+++.+++ .+|++++..|..+ ..+.. |+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3457999999999999999999988778999998 899998876 2789999999877 23333 9998
Q ss_pred eccccccCCh-h--HHHHHHHHHHHhCCCCCEEEEE
Q 018366 258 MKWILHCWDD-D--HCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 258 ~~~~lh~~~~-~--~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
+-..=. ... + -...+++.++++|+|+|.++..
T Consensus 155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 743221 111 0 1268999999999999999986
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.3e-07 Score=75.47 Aligned_cols=110 Identities=17% Similarity=0.306 Sum_probs=66.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---------------CCCceEEEcCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM 246 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D~ 246 (357)
..+++.++ +.+...++|||||.|......+-..+--+++|+++ +...+.+.. ..++++..+||
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 35666666 66778999999999999888887765445888887 544433321 14588899999
Q ss_pred CC-C-----CCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 247 FD-S-----VPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 247 ~~-~-----~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
.+ + +.++|+|++++.+ |+ ++...-|++....||||.+++......+.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFCPR 163 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-T
T ss_pred cccHhHhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcCCC
Confidence 87 3 2345999999976 44 45556668888889999998876665544
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=77.35 Aligned_cols=98 Identities=15% Similarity=0.234 Sum_probs=73.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeech-HHHHhCCCC--------C----CceEEEcCCCC-------CCCC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPSY--------A----GVEHVGGNMFD-------SVPE 252 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~--------~----~v~~~~~D~~~-------~~p~ 252 (357)
++...++|+|||.|.=+...-++.-+ .++++|+. -.+++|+.+ . .+.|+++|-+. +.++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 45678999999999988887776433 68999994 457777652 1 25788887553 1122
Q ss_pred --CCEEEecccccc-C-ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 253 --GDAILMKWILHC-W-DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 253 --~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
-|+|.|..++|+ | +.+.+..+|+++.+.|||||+++-.-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 399999999997 3 45678899999999999999998743
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-06 Score=78.90 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCCC---CCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDSV---PEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~~---p~~-D~i~~ 258 (357)
++.+||.||+|.|..++++++..+..+++.+|+ +.+++.+++ .+|++++.+|.+.-+ +.. |+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 567999999999999999998766667888888 888887764 268999999988722 223 99987
Q ss_pred ccccccCC--hh---HHHHHHH-HHHHhCCCCCEEEEE
Q 018366 259 KWILHCWD--DD---HCLRILK-NCYKAIPDNGKVIVM 290 (357)
Q Consensus 259 ~~~lh~~~--~~---~~~~~L~-~~~~~LkpgG~l~i~ 290 (357)
-. ...+. .. -..++++ .+++.|+|||.+++.
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 52 11110 00 1247787 899999999998764
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.5e-06 Score=75.75 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=92.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEc----CCCCCC--CC-C-CEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGG----NMFDSV--PE-G-DAI 256 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~----D~~~~~--p~-~-D~i 256 (357)
...++||||||+|.+...++.+.++++++++|+ +..++.|++. .+|++... +++... +. . |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999888888889999999998 7777777641 35666532 333322 23 2 999
Q ss_pred EeccccccCChhH---HHHHHHHH----------------HHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh
Q 018366 257 LMKWILHCWDDDH---CLRILKNC----------------YKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR 317 (357)
Q Consensus 257 ~~~~~lh~~~~~~---~~~~L~~~----------------~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (357)
+|+=-+|.-..+. ...-.+++ .+++.+||.+.++..+..+. ..+..... ++..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS------~~~~~~~g-wfts- 265 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES------KAFAKQVL-WFTS- 265 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH------HHHHhhCc-EEEE-
Confidence 9998887654332 11222222 23345778777776665442 00111111 1111
Q ss_pred cCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 318 DGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 318 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
.-++.-+.+.+.+.|++.|.+.+.++...
T Consensus 266 -mv~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 266 -LVSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred -EeeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 12445589999999999999877777653
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-06 Score=76.91 Aligned_cols=105 Identities=12% Similarity=0.184 Sum_probs=76.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC----CCCeEEEeec-hHHHHhCCC------CCCceE--EEcCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL-PHVVQDAPS------YAGVEH--VGGNMFD 248 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~~v~~--~~~D~~~ 248 (357)
..+|+..++ +...|+|+|||+|.=+..|++.. ...+++.+|+ .+.++.+.+ .+.+++ +++|+.+
T Consensus 67 ~~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 67 SSDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 346666665 45589999999998777666655 3467999998 445544322 355665 7888866
Q ss_pred C---CC-----CC-CEE-EeccccccCChhHHHHHHHHHHH-hCCCCCEEEE
Q 018366 249 S---VP-----EG-DAI-LMKWILHCWDDDHCLRILKNCYK-AIPDNGKVIV 289 (357)
Q Consensus 249 ~---~p-----~~-D~i-~~~~~lh~~~~~~~~~~L~~~~~-~LkpgG~l~i 289 (357)
. ++ .. .++ ++..++.+++++++..+|+++++ .|+|||.|+|
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2 22 12 454 55679999999999999999999 9999999888
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-06 Score=75.45 Aligned_cols=91 Identities=11% Similarity=0.277 Sum_probs=61.5
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCCC-
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEGD- 254 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~D- 254 (357)
...+++.++ ..+..+|||||||+|.++..+++..+. ++++|. +.+++.+++ .++++++.+|+.+ +.+..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 345666665 566789999999999999999999875 555665 667666553 3679999999988 554334
Q ss_pred -EEEeccccccCChhHHHHHHHHHHH
Q 018366 255 -AILMKWILHCWDDDHCLRILKNCYK 279 (357)
Q Consensus 255 -~i~~~~~lh~~~~~~~~~~L~~~~~ 279 (357)
.+++++.=++++. .++.++..
T Consensus 95 ~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHH----HHHHHHhc
Confidence 3334444444433 44555443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=71.86 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=94.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCc--eEEEcCCCC-CCCCC--CEEEeccccccC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGV--EHVGGNMFD-SVPEG--DAILMKWILHCW 265 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v--~~~~~D~~~-~~p~~--D~i~~~~~lh~~ 265 (357)
....++|||||-|.....+....-. +.+..|. -.|++.++.. +.+ ....+|=.. ++.++ |+|+.+..+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~ve-kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVE-KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchh-heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 3458999999999999999988632 6788887 6788887753 443 455566444 55554 999999999987
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCcc------CCHHHHHHHHHHcCCc
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRE------RTKKEFTELAIAAGFK 339 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~t~~e~~~ll~~aGf~ 339 (357)
.+.+..+.+++.+|||+|.++-.-.. .+ . ...+-..+.+.-+... ||-. -...++..+|..|||.
T Consensus 151 --NdLPg~m~~ck~~lKPDg~Fiasmlg--gd---T-LyELR~slqLAelER~-GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 --NDLPGSMIQCKLALKPDGLFIASMLG--GD---T-LYELRCSLQLAELERE-GGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred --ccCchHHHHHHHhcCCCccchhHHhc--cc---c-HHHHHHHhhHHHHHhc-cCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 56789999999999999987753321 11 1 1111222222222222 3322 2356788999999999
Q ss_pred eeEE
Q 018366 340 HINF 343 (357)
Q Consensus 340 ~~~~ 343 (357)
...+
T Consensus 222 m~tv 225 (325)
T KOG2940|consen 222 MLTV 225 (325)
T ss_pred ccee
Confidence 7654
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.5e-06 Score=74.56 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=78.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~- 253 (357)
+.++.+..+++ .+.|||+|||+|.++.-.++... -++..++-.+|.+.|+.. +||.++.|-+.+ ++|+.
T Consensus 167 ~Ail~N~sDF~-~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~ 244 (517)
T KOG1500|consen 167 RAILENHSDFQ-DKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKV 244 (517)
T ss_pred HHHHhcccccC-CcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhc
Confidence 34555544354 46899999999999888777753 377888878888888752 689999999988 88876
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
|+|+.--.-+.+-++...+-.-.+++.|||.|.++
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 99987655555545666666667789999999876
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.28 E-value=7e-07 Score=76.05 Aligned_cols=97 Identities=15% Similarity=0.289 Sum_probs=73.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCC-------C-CC-C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSV-------P-EG-D 254 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~-------p-~~-D 254 (357)
.++.+|||||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+.+ + .. |
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3578999999999999999999887 578999988 767776654 258999999986511 1 12 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+|++-. ...+....+..+.+.|+|||.+++-+...
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 998743 44566789999999999999888855443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.5e-05 Score=63.50 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=86.7
Q ss_pred CceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCCCCC-CC-CEEEeccccccC
Q 018366 195 VERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFDSVP-EG-DAILMKWILHCW 265 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~p-~~-D~i~~~~~lh~~ 265 (357)
+.-++|||||+|..+..+++.. |+..+...|+ |..++...+ ..++..+..|+.+.+. .. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 5789999999999988888765 7778888898 776665433 1346788888887433 33 888775433221
Q ss_pred ChhH-------------------HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCH
Q 018366 266 DDDH-------------------CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTK 326 (357)
Q Consensus 266 ~~~~-------------------~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 326 (357)
+++. ..++|.++-..|.|.|.++++-... -.+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-----------------------------N~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-----------------------------NKP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-----------------------------cCH
Confidence 1111 2456666667777888777754321 125
Q ss_pred HHHHHHHHHcCCceeEEeec---CCceeEEEEe
Q 018366 327 KEFTELAIAAGFKHINFASC---VCNLYIMEFF 356 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~---~~~~~vie~~ 356 (357)
+++-+.++.-||........ .+..+++.++
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 66777888888887655443 2556666654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-06 Score=71.34 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=65.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC---------CCCceEEEcCCCCCC-----C-CC-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFDSV-----P-EG-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~-----p-~~-D~i 256 (357)
....+|||+|||+|..+..++...+..+++..|.+++++..+. ..++.+...|-.++. + .. |+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 4567999999999999999998866678888898556554332 245777777654421 2 23 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+.+.++|+- +....+++.+.+.|+|+|.+++.....
T Consensus 124 lasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 124 LASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999864 778899999999999999877766554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-05 Score=77.78 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=69.3
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC-----
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS----- 249 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~----- 249 (357)
...+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +++++.+++. .+++++.+|+.+.
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344555554 4456799999999999999999885 47888998 8888877652 4689999998652
Q ss_pred CCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 250 VPE-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 250 ~p~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++. . |+|++.--- ....++++.+.+ ++|++.+++.
T Consensus 363 ~~~~~fD~Vi~dPPr-----~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 363 WALGGFDKVLLDPPR-----AGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhcCCCCEEEECcCC-----cChHHHHHHHHh-cCCCeEEEEE
Confidence 222 2 998873321 123355655555 6888877773
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-06 Score=81.72 Aligned_cols=126 Identities=18% Similarity=0.249 Sum_probs=80.1
Q ss_pred hhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCC---CCceEEEEcCCcchHHHHHHhhC----CCCeEEEeec-h
Q 018366 156 IFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQ---NVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL-P 227 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~-~ 227 (357)
.|+-|++|+-....|.+++.. .+.+.....+ +...|+|||||+|-++...++.. ...+++.++- +
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 577788888777777775421 2333222111 24689999999999987766554 3467888875 4
Q ss_pred HHHHhC----CC---CCCceEEEcCCCC-CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 228 HVVQDA----PS---YAGVEHVGGNMFD-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 228 ~~~~~a----~~---~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
..+... +. .++|+++.+|+.+ ..|.- |+|++-..=.....|-..++|....+.|||||.++
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 333221 11 2689999999999 66654 99988666544444667788999899999998665
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-05 Score=66.98 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=84.4
Q ss_pred hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHH-hCCCCCCce-EEEcCCCC----CCC-
Q 018366 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ-DAPSYAGVE-HVGGNMFD----SVP- 251 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~v~-~~~~D~~~----~~p- 251 (357)
.....+++.++...+..+|||+|||+|.++..+++.. -.+++++|. +.++. ..++.+++. +...|+.. +.+
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC
Confidence 3345666665522355689999999999999999873 357899998 43544 456666654 33335542 111
Q ss_pred C---CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE-EEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 252 E---GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVI-VMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 252 ~---~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~-i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
+ .|+.+++.. .+|..+.+.|+| |.++ ++-+-.+-.+.... .-....|- .....-.+
T Consensus 140 d~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~--~~giv~~~-------~~~~~~~~ 199 (228)
T TIGR00478 140 DFATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKN--KKGVVRDK-------EAIALALH 199 (228)
T ss_pred CceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcC--cCCeecCH-------HHHHHHHH
Confidence 1 166665443 358889999999 6555 43332221110000 00000000 01112356
Q ss_pred HHHHHHHHcCCceeEEeecC
Q 018366 328 EFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~~ 347 (357)
++..++.+.||++....+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 200 KVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHcCCCeEeeEEECC
Confidence 67778888999998887764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.8e-06 Score=72.67 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=59.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCCCE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEGDA 255 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~D~ 255 (357)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 345666665 5567899999999999999999984 46777777 677766654 3679999999988 5555588
Q ss_pred EEeccccc
Q 018366 256 ILMKWILH 263 (357)
Q Consensus 256 i~~~~~lh 263 (357)
|+++-..+
T Consensus 95 Vv~NlPy~ 102 (258)
T PRK14896 95 VVSNLPYQ 102 (258)
T ss_pred EEEcCCcc
Confidence 88765543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.6e-06 Score=72.89 Aligned_cols=111 Identities=13% Similarity=0.300 Sum_probs=77.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCCC----CCceE--EEcCCCC---CCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY----AGVEH--VGGNMFD---SVP 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~~v~~--~~~D~~~---~~p 251 (357)
.++...++++ .+.+|||+|+|.|..+-+..+.++.. .++.+|. +.+.+.++.. ..... ...++.. +++
T Consensus 23 ~El~~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP 101 (274)
T ss_pred HHHHHhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence 4555555644 45699999999999888888888754 4678887 6777655431 11110 0111111 233
Q ss_pred CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 252 EGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 252 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
..|+|+++++|-.++++...++++++.+.+.+ .|+|+|+..+.
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 34999999999999988888999999888776 99999976544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.9e-06 Score=74.01 Aligned_cols=75 Identities=11% Similarity=0.237 Sum_probs=56.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DA 255 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~ 255 (357)
..+++.+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +.++. |.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 45666565 56678999999999999999999976 6677776 7888877553 589999999987 44442 55
Q ss_pred EEecc
Q 018366 256 ILMKW 260 (357)
Q Consensus 256 i~~~~ 260 (357)
|+.+-
T Consensus 109 vv~Nl 113 (272)
T PRK00274 109 VVANL 113 (272)
T ss_pred EEEeC
Confidence 65543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-06 Score=80.85 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=68.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEe---ec-hHHHHhCCCCCCceEEEcCC---CCCCCCC--CEEEeccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNF---DL-PHVVQDAPSYAGVEHVGGNM---FDSVPEG--DAILMKWILH 263 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~v~~~~~D~---~~~~p~~--D~i~~~~~lh 263 (357)
.....+||+|||+|.++..+.++. +..+-+ |. +..++.|.++ .|..+.+-+ .-|+|.+ |+|-|+.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhcccccc
Confidence 345789999999999999999884 333222 22 3344444332 233332322 2278875 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
.|...+ ..+|-++.|+|+|||+++...+-..
T Consensus 193 ~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 997665 4789999999999999998766443
|
; GO: 0008168 methyltransferase activity |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-06 Score=72.87 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=78.5
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEec
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILMK 259 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~~ 259 (357)
..+...+ ....++|+|||.|.++.. +|.+..++.|+ ...+..++..+.......|+.. +.+.. |..+..
T Consensus 38 qfl~~~~---~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 38 QFLDSQP---TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSI 110 (293)
T ss_pred HHHhccC---CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhh
Confidence 4444443 467899999999987663 58889999998 5666666665444667788887 66553 999999
Q ss_pred cccccCChh-HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 260 WILHCWDDD-HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 260 ~~lh~~~~~-~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.++||+... ....+++++.+.++|||..+|.-.
T Consensus 111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 999998755 455999999999999999777543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.3e-06 Score=81.24 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=69.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhC-CC-----CCCceEEEcCCCC---CCCCC--CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-PS-----YAGVEHVGGNMFD---SVPEG--DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~-----~~~v~~~~~D~~~---~~p~~--D~i~~~~~ 261 (357)
+...+||||||.|.++..++..+|+..++++|. ...+..+ +. ..++.++.+|+.. .++.+ |.|++...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 356899999999999999999999999999998 3322222 11 2577788887642 45544 77766433
Q ss_pred cccCChh------HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 262 LHCWDDD------HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 262 lh~~~~~------~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
=-+.... -...+|+.+++.|||||.|.+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 2211100 12589999999999999999865
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=68.35 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=67.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCC----CCCCC--CC--CE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNM----FDSVP--EG--DA 255 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~----~~~~p--~~--D~ 255 (357)
+.....|||+|||+|..+..++...|+.+++.+|. +..+..+.+ .+++.++..++ ..+.+ .+ |+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 34456899999999999999999999999999998 666665554 26787775444 33332 33 77
Q ss_pred EEecc--ccccC----------------------ChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 256 ILMKW--ILHCW----------------------DDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 256 i~~~~--~lh~~----------------------~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++++- +.+.= .-+....++.-+.+.|+|||.+.+-
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 77642 22110 0022345566677899999988773
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.2e-06 Score=68.92 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=64.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCC--CC--CCEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSV--PE--GDAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~--p~--~D~i~~~~~l 262 (357)
...+|||+|||+|.++..++.+.. .+++++|. +..++.+++. .+++++.+|+.+.+ .. .|+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 346999999999999987665553 57888887 6666655542 46889999987632 22 2999986653
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCCEEEEEee
Q 018366 263 HCWDDDHCLRILKNCYK--AIPDNGKVIVMNS 292 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~--~LkpgG~l~i~e~ 292 (357)
+. .-..++++.+.. .|+|++.+++-..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 32 223455565555 3789887766443
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=70.83 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=67.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCCCCCC-CEEEecc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDSVPEG-DAILMKW 260 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~~p~~-D~i~~~~ 260 (357)
+++++||-||||.|..++++++. |. +++.+|+ +.+++.+++ ++|++++.. +.+...+. |+|+.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 46789999999999999999987 44 8888887 888888776 278888762 22222233 9999753
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. + + ....+.++++|+|||.++..-
T Consensus 148 ~---~-~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 E---P-D---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C---C-C---hHHHHHHHHhcCCCcEEEECC
Confidence 2 1 1 477899999999999998843
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=6e-06 Score=72.30 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=72.7
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCC---------CC
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVP---------EG 253 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p---------~~ 253 (357)
..++.+||+||+++|.-+..++...| +.+++.+|. ++..+.|++ .++|+++.||..+.++ ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34578999999999999999998764 678888887 666666654 2689999999876211 23
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+|++-. ........++.+.+.|+|||.|++ |.+
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~-DNv 191 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGY-DNT 191 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEE-cCC
Confidence 9988743 345567889999999999998666 443
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=72.18 Aligned_cols=89 Identities=15% Similarity=0.327 Sum_probs=62.4
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-CCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~p~ 252 (357)
+..+++... ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 345666665 56678999999999999999998854 4666666 777776553 3579999999987 5544
Q ss_pred CCEEEeccccccCChhHHHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRIL 274 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L 274 (357)
.|+|+++ .=++++.+...++|
T Consensus 102 ~d~VvaN-lPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVAN-VPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEec-CCcccCcHHHHHHH
Confidence 4877754 44445545444444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.2e-05 Score=59.96 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=70.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcch-HHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCC---C-CEEE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPE---G-DAIL 257 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~---~-D~i~ 257 (357)
.+.+.++ ..+..+|+|||||+|. ++..|.+. +..++++|+ +..++.+++ ..+.++.+|++++-++ + |+|+
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 4555555 2345789999999996 77777765 567888888 777776654 3578999999995442 3 9998
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
..+ |+.+...-+.++.+.. |.-++|.....
T Consensus 83 sir-----pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 866 5567777777777754 56677755543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.1e-05 Score=81.77 Aligned_cols=97 Identities=9% Similarity=0.074 Sum_probs=70.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCC---CCCC-CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDS---VPEG-DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~---~p~~-D~i~~~~ 260 (357)
+..+|||+|||+|.++..++... ..+++.+|+ +.+++.+++. .+++++.+|+++. .+.. |+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 45799999999999999999863 336899998 7788877652 3689999998762 2333 9998832
Q ss_pred cc--------ccC-ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 261 IL--------HCW-DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 261 ~l--------h~~-~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
-- ..+ ...+...+++.+.+.|+|||.+++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 10 000 01345678999999999999887743
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.8e-06 Score=72.74 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=73.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~-~-D~i 256 (357)
+++.+||-||+|.|..++++++..+-.+++.+|+ |.+++.+++ .+|++++.+|... ..++ . |+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3678999999999999999998765667888888 888887765 2689999999865 3444 4 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 018366 257 LMKWILHCWDDDH--CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 257 ~~~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+.-..=...+... ..++++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8633221111111 3589999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.2e-05 Score=72.22 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=68.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCC-CC-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVP-EG-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p-~~-D~i~~~~~lh 263 (357)
..+.|||+|||+|-++.--+++. -.+++++|-.++++.+++. ..|+++.+.+.+ .+| +- |+|++-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 45799999999999999888887 4588999987777766641 448899998888 677 33 9999887766
Q ss_pred cCChhHHH-HHHHHHHHhCCCCCEEE
Q 018366 264 CWDDDHCL-RILKNCYKAIPDNGKVI 288 (357)
Q Consensus 264 ~~~~~~~~-~~L~~~~~~LkpgG~l~ 288 (357)
+.--+... .+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 64323322 22322236899999775
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=3e-05 Score=72.90 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=67.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCCC------CCC-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDSV------PEG-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~------p~~-D~i~ 257 (357)
+..+|||+|||+|.++...+.. ...+++.+|+ +.+++.+++. .+++++.+|+++.. ... |+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4579999999999998876643 3447899998 7777776642 26889999998722 122 9999
Q ss_pred eccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHCWDD-------DHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+.---..-+. .....+++.+.+.|+|||.|+.+.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7633211111 123466677889999999999865
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0001 Score=67.53 Aligned_cols=88 Identities=9% Similarity=0.007 Sum_probs=59.3
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC---CCCC-CEEEeccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS---VPEG-DAILMKWILH 263 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~p~~-D~i~~~~~lh 263 (357)
..+|||+|||+|.++..+++. ..+++++|. +.+++.+++. .+++++.+|+.+. .... |+|++.---.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 479999999999999999985 457899998 8888877642 4689999998762 2123 9988753211
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
... + .++ +....++|++.+++
T Consensus 252 G~~-~---~~~-~~l~~~~~~~ivyv 272 (315)
T PRK03522 252 GIG-K---ELC-DYLSQMAPRFILYS 272 (315)
T ss_pred Ccc-H---HHH-HHHHHcCCCeEEEE
Confidence 111 1 222 22333677665555
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.4e-05 Score=65.37 Aligned_cols=90 Identities=12% Similarity=0.326 Sum_probs=64.2
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC----CCCceEEEcCCCC-CCCC--C-
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFD-SVPE--G- 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~v~~~~~D~~~-~~p~--~- 253 (357)
++.|++..+ ..+..+|+|||+|.|.++..|+++...+.++.+| +.+++..++ .++++++.+|+.. +++. .
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 457777776 5567899999999999999999999887788888 555554443 4789999999999 7775 3
Q ss_pred CEEEeccccccCChhHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRIL 274 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L 274 (357)
+.|+. |.=++.+.+-..++|
T Consensus 97 ~~vVa-NlPY~Isspii~kll 116 (259)
T COG0030 97 YKVVA-NLPYNISSPILFKLL 116 (259)
T ss_pred CEEEE-cCCCcccHHHHHHHH
Confidence 55543 333344433333333
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.3e-05 Score=64.30 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=65.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC--CCCeEEEeec-hHHHHhCCCC----------------CCceEEEcCCCCCCCC
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY----------------AGVEHVGGNMFDSVPE 252 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~----------------~~v~~~~~D~~~~~p~ 252 (357)
+.+..++||+|+|+|.++..++... +....+++|. |+.++.+++. .++.++.||-..-.++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 4567899999999999988877543 3333377776 8877766541 4678899998874333
Q ss_pred -C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 253 -G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 253 -~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
+ |.|.+-. ...++.+++-+.|+|||+++|
T Consensus 160 ~a~YDaIhvGA--------aa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 QAPYDAIHVGA--------AASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cCCcceEEEcc--------CccccHHHHHHhhccCCeEEE
Confidence 2 9988753 234567788888999999998
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4e-05 Score=62.95 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=50.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCCCCEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPEGDAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~~D~i~~~~~l 262 (357)
...+|+|+|||||.++...+-..|. +++++|+ |+.++.+++. .+|+|++.|+.+.....|.++++=-+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 4568999999999999988877664 6777777 8888887763 57999999987643334766665433
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00061 Score=60.21 Aligned_cols=136 Identities=14% Similarity=0.235 Sum_probs=87.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-----hH-HHHhCCC--------------------------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PH-VVQDAPS-------------------------------- 235 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~-~~~~a~~-------------------------------- 235 (357)
...+||-=|||-|.++.+++...-.+.+..+.. .. +++...+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 457999999999999999999843333322221 01 1121111
Q ss_pred -------CCCceEEEcCCCC-CCCC---C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCc
Q 018366 236 -------YAGVEHVGGNMFD-SVPE---G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS 302 (357)
Q Consensus 236 -------~~~v~~~~~D~~~-~~p~---~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~ 302 (357)
..++....|||.+ ..+. + |+|+....+.- .+++.+.|+.|.+.|||||..+=+-+..-...
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~---- 209 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFE---- 209 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCC----
Confidence 0246778899988 2222 2 99988766653 37889999999999999997665544332210
Q ss_pred hhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 303 SARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+.. ......-+.|.+|+..+.+..||++++...
T Consensus 210 --------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 --------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred --------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 000122467999999999999999987544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.1e-05 Score=72.22 Aligned_cols=98 Identities=23% Similarity=0.278 Sum_probs=66.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC-----CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS-----VP 251 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-----~p 251 (357)
.+.+.+. ..+..+|||+|||+|.++..+++.. .+++++|. +++++.+++. .+++++.+|+.+. ..
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 3444444 4556799999999999999999875 36888888 8888877652 5789999998652 11
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 252 -EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 252 -~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.. |+|++.-.=-.. ...+++.+.+ ++|++.+++
T Consensus 360 ~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 360 GQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 22 888863221111 2355665554 789876666
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.1e-05 Score=66.76 Aligned_cols=140 Identities=18% Similarity=0.220 Sum_probs=82.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC-C--CCEEEeccccccCChhHH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP-E--GDAILMKWILHCWDDDHC 270 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p-~--~D~i~~~~~lh~~~~~~~ 270 (357)
.+.++||+|+|.|..+..++..+..+-++.+. ..|+.+.+.. +.++.. ..+... + -|+|.|.++|.-. .+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS-~tMr~rL~kk-~ynVl~--~~ew~~t~~k~dli~clNlLDRc--~~p 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELS-WTMRDRLKKK-NYNVLT--EIEWLQTDVKLDLILCLNLLDRC--FDP 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhh-HHHHHHHhhc-CCceee--ehhhhhcCceeehHHHHHHHHhh--cCh
Confidence 45799999999999999988776554333333 4566655542 112211 111111 1 2999999999876 345
Q ss_pred HHHHHHHHHhCCC-CCEEEEEeec--c---CCCCCCCchhhhhhhhhhhhhhhcCCCccC--CHHHHHHHHHHcCCceeE
Q 018366 271 LRILKNCYKAIPD-NGKVIVMNSI--V---PEIPEVSSSARETSLLDVLLMTRDGGGRER--TKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 271 ~~~L~~~~~~Lkp-gG~l~i~e~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~ 342 (357)
-++|+.++.+|+| .|++++.=.. . +.+....+ .+....+ . .+|+.+ ....+.++|+.|||++..
T Consensus 186 ~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~-~rPdn~L-----e--~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLP-LRPDNLL-----E--NNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCc-CCchHHH-----H--hcCccHHHHHHHHHHHHHhcCchhhh
Confidence 7999999999999 7887763221 1 11111110 0111111 1 134422 123467889999999876
Q ss_pred EeecC
Q 018366 343 FASCV 347 (357)
Q Consensus 343 ~~~~~ 347 (357)
.+..+
T Consensus 258 wTrlP 262 (288)
T KOG3987|consen 258 WTRLP 262 (288)
T ss_pred hhcCC
Confidence 65543
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00034 Score=57.58 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=86.2
Q ss_pred cCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hH-HHH-----------hCCC--CCCceEEEcCCCC-CCCCC-
Q 018366 191 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH-VVQ-----------DAPS--YAGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 191 ~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~-~~~-----------~a~~--~~~v~~~~~D~~~-~~p~~- 253 (357)
++++..+|+|+=.|.|++++-++... .-++.+... |. ... .+++ ..+++.+..+... ..|+.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~v-gp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~ 123 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAV-GPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKL 123 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhc-CCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcc
Confidence 47888999999999999999887754 223333322 21 111 1111 1345555555444 33344
Q ss_pred CEEEeccccccC-----ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 254 DAILMKWILHCW-----DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 254 D~i~~~~~lh~~-----~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
|+++....-|++ ......++.+.++++|||||.+++.|.....+...... .--...+..-
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt---------------~~~~ri~~a~ 188 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDT---------------ITLHRIDPAV 188 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhh---------------hhhcccChHH
Confidence 776654333322 24567799999999999999999999876553221100 0112246777
Q ss_pred HHHHHHHcCCceeEEeec
Q 018366 329 FTELAIAAGFKHINFASC 346 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~ 346 (357)
..+..+++||+..--..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 888889999998755443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00011 Score=62.48 Aligned_cols=123 Identities=17% Similarity=0.236 Sum_probs=83.6
Q ss_pred EEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCC---CCEEEeccccccCC
Q 018366 198 LVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPE---GDAILMKWILHCWD 266 (357)
Q Consensus 198 vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~---~D~i~~~~~lh~~~ 266 (357)
|.||||-+|.+...|++...-.+++..|+ +.-++.|++ .+++++..+|-++.++. .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988778999998 666666654 26799999998875543 378877664 4
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
..-..++|.+....++...+|++. +. .....+++||.+.||.+++-...
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILq-P~------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQ-PN------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEE-ES------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEe-CC------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 466778888877777655555551 10 13678899999999999865433
Q ss_pred --CCcee-EEEE
Q 018366 347 --VCNLY-IMEF 355 (357)
Q Consensus 347 --~~~~~-vie~ 355 (357)
.+.++ +|.+
T Consensus 126 ~e~~~~YeIi~~ 137 (205)
T PF04816_consen 126 EENGRFYEIIVA 137 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred eECCEEEEEEEE
Confidence 34444 5444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00035 Score=59.23 Aligned_cols=133 Identities=16% Similarity=0.215 Sum_probs=87.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCC---CCCCC--CEEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFD---SVPEG--DAIL 257 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~---~~p~~--D~i~ 257 (357)
.+...+|||...|-|..+.+.+++.. .+++-++- |.+++.+.-+ .+++++.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45678999999999999999998864 24444443 8888887653 358999999877 46654 8875
Q ss_pred ecc-ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 258 MKW-ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 258 ~~~-~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
--- -|..-..=-..++.+++++.|||||+++-..-.... . . .|.. -+....+.|+++
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~-----r---------------y-rG~d-~~~gVa~RLr~v 268 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK-----R---------------Y-RGLD-LPKGVAERLRRV 268 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc-----c---------------c-ccCC-hhHHHHHHHHhc
Confidence 200 000111123468999999999999998764321111 0 0 1211 245677889999
Q ss_pred CCceeEEeecC
Q 018366 337 GFKHINFASCV 347 (357)
Q Consensus 337 Gf~~~~~~~~~ 347 (357)
||.+++.....
T Consensus 269 GF~~v~~~~~~ 279 (287)
T COG2521 269 GFEVVKKVREA 279 (287)
T ss_pred Cceeeeeehhc
Confidence 99988776543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.2e-05 Score=62.22 Aligned_cols=89 Identities=13% Similarity=0.284 Sum_probs=66.5
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hH---HHHhCCC---CCCceEEEcCCCC-CCCCC-CEEEeccccccCCh
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH---VVQDAPS---YAGVEHVGGNMFD-SVPEG-DAILMKWILHCWDD 267 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~~~ 267 (357)
+++|||+|.|..+.-++=.+|+.+++.+|. .. .++.+.. ..+++++.+.+.+ ..+.. |+|+++.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence 899999999999999999999999999996 21 2222221 3679999998877 33334 999988764
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
....+++-+...++|||+++..-
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEc
Confidence 34577888888999999998853
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00028 Score=59.41 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=78.7
Q ss_pred HhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeechHHHHhCCCCCCceEEEcCCCCC-C-
Q 018366 174 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS-V- 250 (357)
Q Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-~- 250 (357)
..+.+.+...++.+.+.-+++..+|+|+|+..|.++..+++.... ..++++|+.++-.. ++|.++.+|+.++ .
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTL 100 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHH
Confidence 344455556677777765778899999999999999988887643 45899997555332 4599999999872 1
Q ss_pred -------CCC--CEEEecc---c-----cccC-ChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 251 -------PEG--DAILMKW---I-----LHCW-DDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 251 -------p~~--D~i~~~~---~-----lh~~-~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.. |+|++-. + .+|. .-.-+..++.-+...|+|||.+++-.+
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 222 7776321 1 1221 112344667777789999999998554
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.6e-05 Score=64.61 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=64.3
Q ss_pred hhHHHHHhhcccCC--CCceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhCCCCCCceEEEcCCCC--------
Q 018366 180 IAMERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD-------- 248 (357)
Q Consensus 180 ~~~~~i~~~l~~~~--~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-------- 248 (357)
....++.+.++-++ +..+|||+||++|.++..++++. +..+++++|+..+... ..+.++.+|+.+
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~----~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL----QNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGG
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc----cceeeeecccchhhHHHhhh
Confidence 34556777766333 45899999999999999999998 6778999998444111 234444455432
Q ss_pred -CCC---CC-CEEEeccccccCC---------hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 249 -SVP---EG-DAILMKWILHCWD---------DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 249 -~~p---~~-D~i~~~~~lh~~~---------~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-.+ .. |+|++=.....-. -+-+...|.-+.+.|+|||.+++--.
T Consensus 83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 111 23 8887655221111 12233445555567899998887443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0001 Score=63.78 Aligned_cols=75 Identities=19% Similarity=0.388 Sum_probs=57.5
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC----C---CCceEEEcCCCC-CCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----Y---AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~---~~v~~~~~D~~~-~~p~~ 253 (357)
+..|+..-+ .++...|||||.|||.++..+++....+-++..| |.++....+ . ....++.||++. ++|..
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~D-prmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f 124 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEID-PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF 124 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecC-cHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence 346666666 7788999999999999999999997665556666 666655443 2 468999999998 77877
Q ss_pred CEEEe
Q 018366 254 DAILM 258 (357)
Q Consensus 254 D~i~~ 258 (357)
|.++.
T Consensus 125 d~cVs 129 (315)
T KOG0820|consen 125 DGCVS 129 (315)
T ss_pred ceeec
Confidence 77665
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.2e-05 Score=62.22 Aligned_cols=100 Identities=15% Similarity=0.324 Sum_probs=64.9
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------------CCCceEEEcCCCCCCCCC-CEEEec
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFDSVPEG-DAILMK 259 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~~~p~~-D~i~~~ 259 (357)
..-+.|||||-|.++..|+..+|+.-+.+.++ -.+.+..++ ..++.+...+.+.-.|.- .--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35799999999999999999999999999987 444333222 145667766665544421 111111
Q ss_pred cccccCChhH-----------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 WILHCWDDDH-----------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~~lh~~~~~~-----------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
-.++.++|+. ...++.+..-+|++||.++.+.-+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 1222223222 2367788888999999999877543
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00014 Score=65.35 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=55.0
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC----CCceEEEcCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD 248 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~ 248 (357)
.+++++.+. ..+...++|.+||.|..+..+++..| +.+++++|. |++++.+++. .+++++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 467788776 55667999999999999999999986 789999999 8888887652 478899888875
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00025 Score=59.84 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=59.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---C--CC-C-CEEEec
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---V--PE-G-DAILMK 259 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~--p~-~-D~i~~~ 259 (357)
..+|||++||+|.++.+++.+... +++.+|. +..++.+++. .+++++.+|+++. . .. . |+|++-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 568999999999999999998764 7888887 6666555431 3688999998652 1 11 2 666553
Q ss_pred cccccCChhHHHHHHHHHHH--hCCCCCEEEEEee
Q 018366 260 WILHCWDDDHCLRILKNCYK--AIPDNGKVIVMNS 292 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~--~LkpgG~l~i~e~ 292 (357)
=-... ....+++..+.+ .|+++|.++ +|.
T Consensus 129 PPy~~---~~~~~~l~~l~~~~~l~~~~iiv-~E~ 159 (189)
T TIGR00095 129 PPFFN---GALQALLELCENNWILEDTVLIV-VEE 159 (189)
T ss_pred cCCCC---CcHHHHHHHHHHCCCCCCCeEEE-EEe
Confidence 32221 223455555543 577777554 454
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00089 Score=60.70 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC--CC-CEEEeccccccCChhH
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP--EG-DAILMKWILHCWDDDH 269 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p--~~-D~i~~~~~lh~~~~~~ 269 (357)
.+..++|||||++|.++..++++ +.+++.+|..++.......++|.+...|.+...| .. |+++|-.+. .
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve------~ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE------K 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc------C
Confidence 46789999999999999999998 4589999987777767778999999999888443 33 999886653 3
Q ss_pred HHHHHHHHHHhCCCC-CEEEEEeeccCC
Q 018366 270 CLRILKNCYKAIPDN-GKVIVMNSIVPE 296 (357)
Q Consensus 270 ~~~~L~~~~~~Lkpg-G~l~i~e~~~~~ 296 (357)
...+.+-+.++|..| .+-.|+....+.
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnLKlpm 309 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNLKLPM 309 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEEEcCC
Confidence 347777788888777 456666666543
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0036 Score=53.62 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=94.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec--hHHHHhCCCCCCceEEEc-CCCCC----CCCC-
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSYAGVEHVGG-NMFDS----VPEG- 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~-D~~~~----~p~~- 253 (357)
....++.++-..+...+||||..||.++.-++++.. .+++++|. .+..-..+..+||..++. |+..- +.+.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 456666666334678999999999999999998753 36777775 445555666778766554 55432 2223
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE-EeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV-MNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|++++--.+ -....+|..+...++|++.++. +-+-.+..+.. ...--....+.....-..++.++
T Consensus 146 d~~v~DvSF-----ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~---------v~kkGvv~d~~~~~~v~~~i~~~ 211 (245)
T COG1189 146 DLIVIDVSF-----ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQ---------VGKKGVVRDPKLHAEVLSKIENF 211 (245)
T ss_pred CeEEEEeeh-----hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhh---------cCcCceecCcchHHHHHHHHHHH
Confidence 788775444 4456889999999999986665 33222211100 00000000012233356788899
Q ss_pred HHHcCCceeEEeecC
Q 018366 333 AIAAGFKHINFASCV 347 (357)
Q Consensus 333 l~~aGf~~~~~~~~~ 347 (357)
+.+.||.+..+.+.+
T Consensus 212 ~~~~g~~~~gl~~Sp 226 (245)
T COG1189 212 AKELGFQVKGLIKSP 226 (245)
T ss_pred HhhcCcEEeeeEccC
Confidence 999999998887664
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0012 Score=55.40 Aligned_cols=100 Identities=16% Similarity=0.277 Sum_probs=75.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-----CCCceEEEc---CCCCCCCCC--CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGG---NMFDSVPEG--DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~---D~~~~~p~~--D~i~~~~~l 262 (357)
.+..+||.||=|-|-....+.++.|..+.+.---|.+.++.+. ..+|....+ |....+|+. |-|+.--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 4678999999999999999999989877655444888887765 356766665 555566664 877654433
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.++ ++...+.+.+.++|||+|++-.+.-.-
T Consensus 180 e~y--Edl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 180 ELY--EDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred hHH--HHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 444 788899999999999999998876543
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00037 Score=65.41 Aligned_cols=90 Identities=7% Similarity=-0.035 Sum_probs=61.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC---C-CCEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP---E-GDAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p---~-~D~i~~~~~l 262 (357)
+..+|||+|||+|.++..++.. ..+++++|. +.+++.+++. .+++++.+|+.+..+ . .|+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3469999999999999999865 357888887 7777766642 468999999865221 2 3988874321
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
-.. ..++++.+. .++|++.+++.
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 111 134455554 47888777773
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0024 Score=56.76 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=94.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC---------CCCceEEEcCCCCCC----------CCC-
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFDSV----------PEG- 253 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~----------p~~- 253 (357)
+...|+.+|||-=.....+... ++++++.+|.|++++..++ ..++.++..|+.+.+ |..
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 4567999999987777766322 3688999999988774432 246788999986311 112
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhh-hhhcCCCccCCHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLL-MTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~l 332 (357)
-++++-.++.+++.++..++|+.+.+...||+.|++ |...+... ............... .....-....+.++..++
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDG-EWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEW 237 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-Eeccccch-hHHHHHHHHHHHhhhcccccccccCCChhhHHHH
Confidence 588889999999999999999999999888887775 44433111 000000000000000 000000112468999999
Q ss_pred HHHcCCceeEE
Q 018366 333 AIAAGFKHINF 343 (357)
Q Consensus 333 l~~aGf~~~~~ 343 (357)
|.+.||+....
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00011 Score=65.77 Aligned_cols=111 Identities=17% Similarity=0.354 Sum_probs=70.2
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCe-EEEeec-hH---HHHhCCCC---CCceEEEcCCCC---CCCCC
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PH---VVQDAPSY---AGVEHVGGNMFD---SVPEG 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~---~~~~a~~~---~~v~~~~~D~~~---~~p~~ 253 (357)
+-...+.++ +.+|||+|.|.|.-+-++-..+|++. +++++. |. +.....+. ........|+.. ++|..
T Consensus 105 L~~~~~dfa-pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 105 LQKRVPDFA-PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred HHHhCCCcC-cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc
Confidence 333344454 45799999999999998888899885 455554 22 22221111 222333445443 56666
Q ss_pred CEEEeccccccC----ChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 254 DAILMKWILHCW----DDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 254 D~i~~~~~lh~~----~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
|.|.+..++|-+ ........++++...+.|||.|+|+|...+.
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 766665555543 2333445899999999999999999975443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00052 Score=61.94 Aligned_cols=93 Identities=20% Similarity=0.402 Sum_probs=70.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCC-------------CCCceEEEcCCCCCCC---CC-
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFDSVP---EG- 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~~~p---~~- 253 (357)
++..+||-+|||.|-.++++.+ +|+. +++.+|+ |.|++.++. .+|++++..|.++... +.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4668999999999999999886 5744 5777777 999998873 2789999999988332 12
Q ss_pred CEEEeccccccCChhH--------HHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 DAILMKWILHCWDDDH--------CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~--------~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|+. +++|++ ..++..-+++.|+++|.+++.-
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 77765 344433 2467778889999999999854
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00054 Score=58.42 Aligned_cols=89 Identities=17% Similarity=0.306 Sum_probs=67.3
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-h---HHHHhCCC---CCCceEEEcCCCC-C-CCC-CCEEEecccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFD-S-VPE-GDAILMKWILHC 264 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~~---~~~v~~~~~D~~~-~-~p~-~D~i~~~~~lh~ 264 (357)
..+++|||.|.|..+.-++=.+|+.+++.+|. . ..++.+.. .++++++.+.+.+ . .+. .|+|+++.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 58999999999999999998999999999995 2 22333322 3679999888877 2 234 699998775
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.....++.-+...+|+||++++
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchh
Confidence 3345667777788999998765
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0078 Score=50.95 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=88.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC----C---CCCceEEEcCCCCCCC-C-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----S---YAGVEHVGGNMFDSVP-E-G 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~---~~~v~~~~~D~~~~~p-~-~ 253 (357)
.+++.++ ...++.||||-+|.+.+.+.+.++...++..|+ +..++.+. + .+++++..+|-+.++. + .
T Consensus 9 ~va~~V~---~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~ 85 (226)
T COG2384 9 TVANLVK---QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDE 85 (226)
T ss_pred HHHHHHH---cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCC
Confidence 3445444 344599999999999999999999999999997 44444332 2 2678899999887543 3 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+++...+ ...-...+|.+-.+-|+.=-++++ .+ + -...++++|
T Consensus 86 ~d~ivIAGM----GG~lI~~ILee~~~~l~~~~rlIL-----QP-----------------------n---~~~~~LR~~ 130 (226)
T COG2384 86 IDVIVIAGM----GGTLIREILEEGKEKLKGVERLIL-----QP-----------------------N---IHTYELREW 130 (226)
T ss_pred cCEEEEeCC----cHHHHHHHHHHhhhhhcCcceEEE-----CC-----------------------C---CCHHHHHHH
Confidence 88877663 445677888887777764334544 11 1 135778899
Q ss_pred HHHcCCceeEEeecCC
Q 018366 333 AIAAGFKHINFASCVC 348 (357)
Q Consensus 333 l~~aGf~~~~~~~~~~ 348 (357)
|.+.+|.++.-.-..+
T Consensus 131 L~~~~~~I~~E~ileE 146 (226)
T COG2384 131 LSANSYEIKAETILEE 146 (226)
T ss_pred HHhCCceeeeeeeecc
Confidence 9999999876544444
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00033 Score=57.28 Aligned_cols=96 Identities=13% Similarity=0.223 Sum_probs=71.0
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCCCEEEeccccccCCh
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEGDAILMKWILHCWDD 267 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~D~i~~~~~lh~~~~ 267 (357)
..+.|+|.|+|-++.-.++... +++.++. |.....+.+. .+++++.+|..+ ++..+|+|+|-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 5789999999998887776644 4444544 7777766653 578999999998 7766699998664333334
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+.-..+++.+.+-||-++.++=.+..
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHh
Confidence 55678899999999999988765443
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0066 Score=53.92 Aligned_cols=137 Identities=12% Similarity=0.231 Sum_probs=87.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-----h-HHHHhCCC--------------------------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----P-HVVQDAPS-------------------------------- 235 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~-~~~~~a~~-------------------------------- 235 (357)
...+||-=|||.|.++..|+...+.+.+-.+.. . =+++..+.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 356899999999999999998877665521110 0 01111110
Q ss_pred -------CCCceEEEcCCCC--CCCC--C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCc
Q 018366 236 -------YAGVEHVGGNMFD--SVPE--G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS 302 (357)
Q Consensus 236 -------~~~v~~~~~D~~~--~~p~--~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~ 302 (357)
......-.|||.+ ..+. + |+|+..+.+.- ..++.+.|..|.+.|||||..+=+-+..-.-.....
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 0123345588887 3333 2 88877765543 378889999999999999999876654322110000
Q ss_pred hhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 303 SARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
. . ....-+.|.+++..+.+.-||++++-..
T Consensus 308 ~------------~-~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 308 V------------E-NEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred C------------c-ccccccccHHHHHHHHHhcCcEEEEeee
Confidence 0 0 0123457899999999999999887653
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=58.73 Aligned_cols=96 Identities=14% Similarity=0.273 Sum_probs=62.8
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC----CCCceEEEcCCCC-CCCC----
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFD-SVPE---- 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~v~~~~~D~~~-~~p~---- 252 (357)
++.+++.++ ..+...|+|||+|.|.++..|++...++.++..| +..++..++ .++++++.+|+.+ +.+.
T Consensus 19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d-~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~ 96 (262)
T PF00398_consen 19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEID-PDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKN 96 (262)
T ss_dssp HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESS-HHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccCcceeecCc-HhHHHHHHHHhhhcccceeeecchhccccHHhhcC
Confidence 457777776 6678899999999999999999998444444444 555554433 5789999999998 5444
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCC
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPD 283 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~Lkp 283 (357)
..+.+..+.=++. ...++.++...-+.
T Consensus 97 ~~~~vv~NlPy~i----s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 97 QPLLVVGNLPYNI----SSPILRKLLELYRF 123 (262)
T ss_dssp SEEEEEEEETGTG----HHHHHHHHHHHGGG
T ss_pred CceEEEEEecccc----hHHHHHHHhhcccc
Confidence 3333333432233 34667776664344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0022 Score=61.57 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCC------CCCceEEEcCCCC---CCCCC-CEEE--
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD---SVPEG-DAIL-- 257 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~p~~-D~i~-- 257 (357)
..+..+|||+++|.|.=+..++....+ ..++..|+ +.-++..++ ..++.+...|... ..+.. |.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999998754 46788887 444443332 2457777777654 23333 8887
Q ss_pred --ecc--cc-------ccCChhHH-------HHHHHHHHHhCCCCCEEEEEeec
Q 018366 258 --MKW--IL-------HCWDDDHC-------LRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 258 --~~~--~l-------h~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+. ++ ..|+.+++ .++|.++.+.|||||+|+-.+-+
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 442 22 23433333 68999999999999999765543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0035 Score=50.54 Aligned_cols=95 Identities=17% Similarity=0.315 Sum_probs=63.1
Q ss_pred EEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC---CC---ceEEEcCCCC---CCCC--C-CEEEeccccc
Q 018366 198 LVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY---AG---VEHVGGNMFD---SVPE--G-DAILMKWILH 263 (357)
Q Consensus 198 vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~~---v~~~~~D~~~---~~p~--~-D~i~~~~~lh 263 (357)
++|+|||+|... .+....+. ..++++|. +.++...+.. .. +.+...|... ++.. . |++ +....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 44444333 36677887 5555543321 11 5677777654 3443 3 888 544444
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
++.+ ....++++.+.++|+|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4432 678999999999999999998876443
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00018 Score=57.30 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=64.6
Q ss_pred CceEEEEcCC-cchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---------CCCceEEEcCCCCC--C-CC-C-CEEEe
Q 018366 195 VERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFDS--V-PE-G-DAILM 258 (357)
Q Consensus 195 ~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~--~-p~-~-D~i~~ 258 (357)
..+||++|+| +|..+..++...|+..+-..|- ...++..++ ..++.++..+.... + .. . |+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 3689999999 5566666777778888888885 333333322 13444444443331 1 12 2 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.++.. ++.-..+.+.|...|+|.|+-++..+
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEecC
Confidence 999854 36778999999999999999766543
|
|
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00087 Score=51.44 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 33 VLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 33 ~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
-...+|.--.++.|+..|.+.|+.++.||++.+++ .+..+++.|+.|...|+|....+.....|++.+
T Consensus 8 ~~fkaLadptRl~IL~~L~~~~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~ 75 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRESGELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQGKWVHYRLSP 75 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEcCEEEEEECc
Confidence 34567777889999999986568999999999999 899999999999999999976432233576644
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.034 Score=46.44 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=88.5
Q ss_pred cccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-----hHHHHhCCCCCCceEEEcCCCCCCC-----CC-CEEE
Q 018366 189 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFDSVP-----EG-DAIL 257 (357)
Q Consensus 189 l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~p-----~~-D~i~ 257 (357)
++ +++..+||-+|..+|+...+++...++-.+..++. .+.+..+++++++--+-+|...|.. +. |+|+
T Consensus 72 ~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 72 FP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEE
Confidence 44 67889999999999999999999988666666665 3456677778888888899877543 22 8877
Q ss_pred eccccccCC-hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 258 MKWILHCWD-DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 258 ~~~~lh~~~-~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
. +.. +.++.-+..++..-||+||++++.=-...-+....+. ..+ .++. +-|++.
T Consensus 151 ~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~------------~vf-------~~ev-~kL~~~ 205 (231)
T COG1889 151 Q-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPE------------EVF-------KDEV-EKLEEG 205 (231)
T ss_pred E-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHH------------HHH-------HHHH-HHHHhc
Confidence 5 222 2455666778888999999777643322211110000 001 2333 445778
Q ss_pred CCceeEEeecC
Q 018366 337 GFKHINFASCV 347 (357)
Q Consensus 337 Gf~~~~~~~~~ 347 (357)
||++.+...+.
T Consensus 206 ~f~i~e~~~Le 216 (231)
T COG1889 206 GFEILEVVDLE 216 (231)
T ss_pred CceeeEEeccC
Confidence 99999887765
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.02 Score=53.43 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=63.8
Q ss_pred CCceEEEEcCCcchHHHHH--------Hhh-------CCCCeEEEeechH-----HHHhCC---C-----------C-CC
Q 018366 194 NVERLVDVGGGFGVTLSMI--------TSK-------YPQIKAVNFDLPH-----VVQDAP---S-----------Y-AG 238 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~-----~~~~a~---~-----------~-~~ 238 (357)
+..+|+|+|||+|.++..+ .++ .|...+..-|+|. ...... + . .+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999665433 222 2456777777651 111110 0 0 11
Q ss_pred ---ceEEEcCCCC-CCCCC--CEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 018366 239 ---VEHVGGNMFD-SVPEG--DAILMKWILHCWDD--D----------------------------------HCLRILKN 276 (357)
Q Consensus 239 ---v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~--~----------------------------------~~~~~L~~ 276 (357)
+.-++|.|.. -+|.+ +++++++.||+.+. + |...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2334567777 67876 99999999998762 1 12233444
Q ss_pred HHHhCCCCCEEEEEeeccCC
Q 018366 277 CYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 277 ~~~~LkpgG~l~i~e~~~~~ 296 (357)
=.+-|.|||++++.-...++
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhccCcEEEEEEecCCC
Confidence 44569999999998776643
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0016 Score=54.45 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=63.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCe---------EEEeec-hHHHHhCCCC-------CCceEEEcCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK---------AVNFDL-PHVVQDAPSY-------AGVEHVGGNM 246 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~-------~~v~~~~~D~ 246 (357)
.++.... +++...|+|-=||+|.++.+.+...++.. +++.|+ +.+++.+++. ..+.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 4444333 67778999999999999999888877777 888888 7777766542 3578999999
Q ss_pred CC-CCCC-C-CEEEecccccc-CCh-hH----HHHHHHHHHHhCCC
Q 018366 247 FD-SVPE-G-DAILMKWILHC-WDD-DH----CLRILKNCYKAIPD 283 (357)
Q Consensus 247 ~~-~~p~-~-D~i~~~~~lh~-~~~-~~----~~~~L~~~~~~Lkp 283 (357)
.+ +.+. . |+|++.--.-. .+. .+ ..++++.+.+.|+|
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 88 5343 3 99987543321 111 12 23667888888998
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0016 Score=44.99 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=48.9
Q ss_pred HHHHhChhHHHHhCCC--CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 40 AAIQLGVFEIIAKAGK--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~--~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
...+-.|+..|.+.|+ .|+.+||+++|+ +...+++.|..|...|+|.... ..++.|+++.
T Consensus 5 ~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~-~~~~~W~i~~ 66 (68)
T smart00550 5 DSLEEKILEFLENSGDETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG-GTPPLWKLTD 66 (68)
T ss_pred hHHHHHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCceEeec
Confidence 3456678888888776 999999999999 8889999999999999999742 1246777653
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=60.50 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=66.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC--C-CCEEEecccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP--E-GDAILMKWILHC 264 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p--~-~D~i~~~~~lh~ 264 (357)
..+|||++||+|..+..++...+...+++.|+ +..++.+++. .++++..+|+..... . .|+|++- -. .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD-P~-G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID-PF-G 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC-CC-C
Confidence 35899999999999999998876557888998 7777766542 346688888765222 2 3999873 22 1
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
....+|..+.+.++|||.+++.
T Consensus 136 ----s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 ----SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CcHHHHHHHHHHhcCCCEEEEE
Confidence 2246788877888999999997
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0011 Score=52.56 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=38.8
Q ss_pred CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 249 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 249 ~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.+.++ |+|++.+++.|++-++-...++.+++.|||||+|-|.-+
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 44443 999999999999989999999999999999999988654
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0029 Score=57.18 Aligned_cols=158 Identities=11% Similarity=0.095 Sum_probs=99.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC----CC-----CceEEEcCCCC-CCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YA-----GVEHVGGNMFD-SVPE- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~-----~v~~~~~D~~~-~~p~- 252 (357)
.+.+.+. .+...|+-+|||==.-+..+-.. +++++..+|.|++++.-++ .. ++.+++.|+++ +++.
T Consensus 84 ~~~~~~~--~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~ 160 (297)
T COG3315 84 FVRAALD--AGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQA 160 (297)
T ss_pred HHHHHHH--hcccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHH
Confidence 4444444 23678999999955444443322 2578899999999986544 22 78999999995 4431
Q ss_pred ---------C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCc-hhhhhhhhhhhhhhhcCCC
Q 018366 253 ---------G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS-SARETSLLDVLLMTRDGGG 321 (357)
Q Consensus 253 ---------~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 321 (357)
. -++++-.++.+++.+...++|.+|.....||..++.............. ..................-
T Consensus 161 L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 240 (297)
T COG3315 161 LAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVY 240 (297)
T ss_pred HHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccccee
Confidence 1 5889999999999999999999999999998888775531111100000 0000000000000000011
Q ss_pred ccCCHHHHHHHHHHcCCceeEEe
Q 018366 322 RERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 322 ~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
......++..++.+.||..+...
T Consensus 241 ~~~~~~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 241 FGDDPAEIETWLAERGWRSTLNR 263 (297)
T ss_pred ccCCHHHHHHHHHhcCEEEEecC
Confidence 22358899999999999987763
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0008 Score=52.72 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=47.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCC-C--CEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPE-G--DAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~-~--D~i~~~~~l 262 (357)
.+.+++|+|||.|.+..+..- +.+-.++++|+ |+.++.+..+ -.+++.+.|+.++.+. + |..+++--+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 357899999999999844332 33446899999 8899988764 2467888888775443 2 766655433
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00087 Score=62.04 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=76.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-CCCCC--CEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-SVPEG--DAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~--D~i~~~~~l 262 (357)
+...++|+|||-|.....+... .....+++|. +.-+.++.. +....++.+|+.+ +++++ |.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 4457999999999999987765 3456777776 333333322 1445668889988 67765 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
.|. ++...++++++++++|||++++.+.+...
T Consensus 189 ~~~--~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 189 CHA--PDLEKVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred ccC--CcHHHHHHHHhcccCCCceEEeHHHHHhh
Confidence 998 45579999999999999999998887543
|
|
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0012 Score=44.51 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=46.1
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..+|..-.+..|++.|...+|.|+.+||+.+|+ ++..+++.|+.|...|+|+.+
T Consensus 4 ~~aL~~p~R~~Il~~L~~~~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASNGPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHCSTBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 346666788889999944469999999999999 899999999999999999974
|
... |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.022 Score=51.89 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=70.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEc-CCCC-CCCCC--CEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGG-NMFD-SVPEG--DAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~-D~~~-~~p~~--D~i~~~~ 260 (357)
...+..|||==||||.++.+..-. ++++++.|+ ..|+.-++.+ ....+... |+.. ++++. |.|++--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456679999999999999997765 678888888 6787777653 23434444 8877 77764 7776421
Q ss_pred -----c-cccCC-hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 261 -----I-LHCWD-DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 261 -----~-lh~~~-~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. ..--. ++-..++|..+.++||+||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 11111 24467899999999999999999654
|
|
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00058 Score=44.40 Aligned_cols=44 Identities=32% Similarity=0.462 Sum_probs=38.1
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
+.|++.|.+.+ +.|+.|||+++|+ ++.-+.|+|..|+..|++.+
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeec
Confidence 45777888765 6799999999999 89999999999999999995
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0017 Score=48.27 Aligned_cols=60 Identities=20% Similarity=0.172 Sum_probs=48.5
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
-.+..|++.|.++++.++.+|++.+++ .+..+++.|+.|...|+|..........|++.+
T Consensus 12 ptRr~IL~lL~~~e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~ 71 (108)
T PHA00738 12 ILRRKILELIAENYILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYKEGRTLYAKIRE 71 (108)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECC
Confidence 467788999988557999999999999 899999999999999999976433334565443
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0035 Score=50.23 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=56.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhh----CCCCeEEEeec-hHHHHhCCCC---------CCceEEEcCCCCC-CCCC-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFDS-VPEG-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~-~p~~-D~i 256 (357)
.+..+|+|+|||.|.++..++.. .++.+++++|. ++..+.+... .++.+..+++.+. .... +++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 56789999999999999999982 27889999997 5555544331 3455555555442 2223 677
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
+.-+.-=.. ...+|+...+ |+-..++
T Consensus 104 vgLHaCG~L----s~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 104 VGLHACGDL----SDRALRLFIR---PNARFLV 129 (141)
T ss_pred EEeecccch----HHHHHHHHHH---cCCCEEE
Confidence 654444333 3355666555 5554443
|
|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0022 Score=46.99 Aligned_cols=57 Identities=26% Similarity=0.353 Sum_probs=47.5
Q ss_pred HhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 43 QLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 43 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
-+.|++.|.+. ++.|+.+||+.+++ ++.-+.|.|+.|+..|++... ..++.|++++.
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~--~~~~~y~l~~~ 64 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQD--GQNGRYRLGPK 64 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeec--CCCCceeecHH
Confidence 35678888775 58999999999999 899999999999999999964 23567887664
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=51.07 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=74.2
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhC----CCC---CCceEEEcCCCC-CCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDA----PSY---AGVEHVGGNMFD-SVP 251 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~---~~v~~~~~D~~~-~~p 251 (357)
+.-|+..++ ..+..+|++-|.|+|.++.++++.. |.-+..-+|. ..-.+.+ +++ +++.+..-|+.. .++
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 456777777 7788999999999999999999876 6667777776 3333333 332 568888888876 333
Q ss_pred C----CCEEEeccccccCChhHHHHHHHHHHHhCCCC-CEEEEEeeccC
Q 018366 252 E----GDAILMKWILHCWDDDHCLRILKNCYKAIPDN-GKVIVMNSIVP 295 (357)
Q Consensus 252 ~----~D~i~~~~~lh~~~~~~~~~~L~~~~~~Lkpg-G~l~i~e~~~~ 295 (357)
. +|.|++ +++. .-..+-.+++.||-+ |+++...++++
T Consensus 173 ~ks~~aDaVFL-----DlPa--Pw~AiPha~~~lk~~g~r~csFSPCIE 214 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPA--PWEAIPHAAKILKDEGGRLCSFSPCIE 214 (314)
T ss_pred ccccccceEEE-----cCCC--hhhhhhhhHHHhhhcCceEEeccHHHH
Confidence 2 288887 3432 335677777888865 48887766553
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0019 Score=54.79 Aligned_cols=90 Identities=21% Similarity=0.306 Sum_probs=62.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC--CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG--DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~--D~i~~~~~l 262 (357)
.+...|+|.-||.|.++..+++..+...++..|+ |..++..++ ..++..+.+|..+-.+.. |-|++...-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~ 179 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPE 179 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TS
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChH
Confidence 3567999999999999999999777778999998 777766544 256889999988743333 888875532
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
....+|..+.+.+++||.+.
T Consensus 180 ------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 ------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEE
T ss_pred ------HHHHHHHHHHHHhcCCcEEE
Confidence 23467888889999998764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0074 Score=49.57 Aligned_cols=104 Identities=18% Similarity=0.249 Sum_probs=64.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhCCCCCCceEEEc-CCCCC---------CCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGG-NMFDS---------VPE 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-D~~~~---------~p~ 252 (357)
+|-+.+.-+++..+|||+||..|.++.-..++. |+..+.++|+-+... -+++.++.+ |+.++ .|.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCC
Confidence 444555546778999999999999999888876 998999999743322 133455555 55442 233
Q ss_pred C--CEEEeccccccCC----------hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 G--DAILMKWILHCWD----------DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~----------~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. |+|+. .+.+.-+ -+-|..+|.-....++|+|.+++--.
T Consensus 135 r~VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 135 RPVDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred CcccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 2 66653 2233211 12344455555567789998887443
|
|
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0017 Score=41.24 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=39.0
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCccee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 90 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 90 (357)
++.|...|.+ ||.++.||++.+++ ++..+++.|+.|...|++.
T Consensus 4 R~~Il~~L~~-~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSE-GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTT-SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh-CCCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 5678888998 69999999999999 9999999999999999987
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0014 Score=45.31 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=45.1
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCccee
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYG 101 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~ 101 (357)
-.|..++..|-..|+.|+++||+.+|+ ++..+.+.|+.|+..|++.... .....|.
T Consensus 8 ~~E~~vy~~Ll~~~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~~-~~~~~Y~ 63 (68)
T PF01978_consen 8 ENEAKVYLALLKNGPATAEEIAEELGI----SRSTVYRALKSLEEKGLVEREE-GRPKVYR 63 (68)
T ss_dssp HHHHHHHHHHHHHCHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEEE-ECCEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc-CceEEEE
Confidence 345667777765579999999999999 9999999999999999999864 2234454
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0061 Score=51.83 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=84.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-h----HHHHhCCCCCCceEEEcCCCCCCC-----CC-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-P----HVVQDAPSYAGVEHVGGNMFDSVP-----EG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~~p-----~~-D~i~~~ 259 (357)
+++..+||-+|.++|....+++.... +-.+..++. | +.+..++++++|--+-.|...|.. +. |+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 56788999999999999999998764 666777776 3 456677778899888899887422 12 888763
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
-. + + ++..-++.++..-||+||.+++.=-.. ..|... ...-...+-.+-|++.||+
T Consensus 151 Va-Q--p-~Qa~I~~~Na~~fLk~gG~~~i~iKa~--------------siD~t~------~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 VA-Q--P-DQARIAALNARHFLKPGGHLIISIKAR--------------SIDSTA------DPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp -S-S--T-THHHHHHHHHHHHEEEEEEEEEEEEHH--------------HH-SSS------SHHHHHHHHHHHHHCTTCE
T ss_pred CC-C--h-HHHHHHHHHHHhhccCCcEEEEEEecC--------------cccCcC------CHHHHHHHHHHHHHHcCCC
Confidence 32 2 2 566778888889999999998853221 111000 0000112223556778999
Q ss_pred eeEEeecC
Q 018366 340 HINFASCV 347 (357)
Q Consensus 340 ~~~~~~~~ 347 (357)
+.+...+.
T Consensus 207 ~~e~i~Le 214 (229)
T PF01269_consen 207 PLEQITLE 214 (229)
T ss_dssp EEEEEE-T
T ss_pred hheEeccC
Confidence 98887764
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=49.26 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=60.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHH---HhhC-CCCeEEEeec--hHHHHhCCCC----CCceEEEcCCCCC---
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMI---TSKY-PQIKAVNFDL--PHVVQDAPSY----AGVEHVGGNMFDS--- 249 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l---~~~~-p~~~~~~~D~--~~~~~~a~~~----~~v~~~~~D~~~~--- 249 (357)
++++-.+. +..|+++|.-.|.-+... ++.. ++.+++++|+ +..-..+.+. +||+++.||-.++
T Consensus 25 qeli~~~k----Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~ 100 (206)
T PF04989_consen 25 QELIWELK----PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIV 100 (206)
T ss_dssp HHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHH
T ss_pred HHHHHHhC----CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHH
Confidence 34555444 679999999888766544 3444 7778899987 2222222222 7999999987652
Q ss_pred --CC----CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 250 --VP----EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 250 --~p----~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.. .. -++++-..=|.+ +++.+.|+.....++||++++|-|...
T Consensus 101 ~~v~~~~~~~~~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 101 DQVRELASPPHPVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp HTSGSS----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred HHHHHhhccCCceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 11 11 345555666666 778899999999999999999977654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0025 Score=55.99 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=59.7
Q ss_pred EEEcCCCC--CC------CC-CCEEEeccccccCC--hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhh
Q 018366 241 HVGGNMFD--SV------PE-GDAILMKWILHCWD--DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL 309 (357)
Q Consensus 241 ~~~~D~~~--~~------p~-~D~i~~~~~lh~~~--~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~ 309 (357)
++..|+.+ ++ |. .|+|++..+|.... .++-...++++.++|||||.|+++...-... +.
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~ 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------YM 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EE
Confidence 67788877 22 23 39999999998754 4456799999999999999999987643220 00
Q ss_pred hhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 310 LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 310 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
..-.. + ..-..+++.+++.|+++||.+.+...
T Consensus 208 vG~~~---F-~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 VGGHK---F-PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ETTEE---E-E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ECCEe---c-ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 00000 0 11234899999999999999888764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0047 Score=39.26 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=38.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCccee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 90 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 90 (357)
.+..|+..|.+.|+.|..+||+.+|+ ....+.+.++-|...|+++
T Consensus 4 ~~~~Il~~l~~~~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLRENPRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHCTTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 45678889999878999999999999 8999999999999999984
|
... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.034 Score=47.44 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=69.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhC-------CCCCCceEEEcCCCCCC----C---CC--CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDA-------PSYAGVEHVGGNMFDSV----P---EG--DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a-------~~~~~v~~~~~D~~~~~----p---~~--D~ 255 (357)
+++++||||.=||.-+..++...|. -+++.+|+ +...+.+ .-...|+++.++..+.+ + .+ |+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 4679999999999999999988875 46788887 4444433 33467999999877622 1 12 88
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
++. .+|.+ +....+.++.+++|+||.|++-....+
T Consensus 153 aFv----DadK~-nY~~y~e~~l~Llr~GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 153 AFV----DADKD-NYSNYYERLLRLLRVGGVIVVDNVLWP 187 (237)
T ss_pred EEE----ccchH-HHHHHHHHHHhhcccccEEEEeccccC
Confidence 874 34544 445999999999999998888554443
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.01 Score=50.91 Aligned_cols=97 Identities=16% Similarity=0.291 Sum_probs=73.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC----CeEEEeech-HHHH-----hCCCCCCce--EEEcCCCC---CCCCC---CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDLP-HVVQ-----DAPSYAGVE--HVGGNMFD---SVPEG---DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~----~~~~~~D~~-~~~~-----~a~~~~~v~--~~~~D~~~---~~p~~---D~ 255 (357)
+...++|+|.|+..=++.+...+.. .+++-+|+. .++. ..++++.++ -+++|+.. .+|.. =.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4679999999999888888877755 678888983 3332 223356544 46678765 34443 55
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++....|-+++++++..+|.+++.+|+||-++++-
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 67788999999999999999999999999988873
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.022 Score=58.07 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=72.4
Q ss_pred hHHHHHhhcccC-CCCceEEEEcCCcchHHHHHHhhC----C--------------------------------------
Q 018366 181 AMERILEHYEGF-QNVERLVDVGGGFGVTLSMITSKY----P-------------------------------------- 217 (357)
Q Consensus 181 ~~~~i~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~----p-------------------------------------- 217 (357)
.+..++... +| ++...++|-.||+|.++++.+... |
T Consensus 177 lAaa~l~~a-~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRS-GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHc-CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 445556543 36 456899999999999998876531 1
Q ss_pred CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCC---C-CCEEEeccccc-cCC-hhHHHHHHHHHHHhCC
Q 018366 218 QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVP---E-GDAILMKWILH-CWD-DDHCLRILKNCYKAIP 282 (357)
Q Consensus 218 ~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p---~-~D~i~~~~~lh-~~~-~~~~~~~L~~~~~~Lk 282 (357)
..+++++|+ +.+++.++.. +++++..+|+.+ +.+ . .|+|+++--.- .+. .++...+.+.+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 235789998 8888877652 458899999987 332 1 29998864321 122 2344555555555544
Q ss_pred ---CCCEEEEEee
Q 018366 283 ---DNGKVIVMNS 292 (357)
Q Consensus 283 ---pgG~l~i~e~ 292 (357)
||++++++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8888877654
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.046 Score=50.45 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHh--------hC--------CCCeEEEeechH-----HHHhCCC-------CCC--ceE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITS--------KY--------PQIKAVNFDLPH-----VVQDAPS-------YAG--VEH 241 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~--------~~--------p~~~~~~~D~~~-----~~~~a~~-------~~~--v~~ 241 (357)
.++..+|+|+||.+|..+..+.. .+ |.+.++.-|+|. ....... .+. +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 45678999999999987766443 22 334567677742 1111110 122 345
Q ss_pred EEcCCCC-CCCCC--CEEEeccccccCCh-------------------------------------hHHHHHHHHHHHhC
Q 018366 242 VGGNMFD-SVPEG--DAILMKWILHCWDD-------------------------------------DHCLRILKNCYKAI 281 (357)
Q Consensus 242 ~~~D~~~-~~p~~--D~i~~~~~lh~~~~-------------------------------------~~~~~~L~~~~~~L 281 (357)
+++.|.. -+|.+ |++++++.||+.+. ++...+|+.=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6788888 67876 99999999998751 11123333334568
Q ss_pred CCCCEEEEEeeccCCCCCCCc--hhhhhhhhhhhhhhhcCC-------------CccCCHHHHHHHHHHcC-CceeE
Q 018366 282 PDNGKVIVMNSIVPEIPEVSS--SARETSLLDVLLMTRDGG-------------GRERTKKEFTELAIAAG-FKHIN 342 (357)
Q Consensus 282 kpgG~l~i~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~ 342 (357)
+|||++++.-...++...... ...+...-+.++-....| -..+|.+|+++.+++.| |++.+
T Consensus 174 v~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~ 250 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEK 250 (334)
T ss_dssp EEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEE
T ss_pred ccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEE
Confidence 999999998887766211110 011111111111111111 13469999999998876 55433
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0058 Score=41.98 Aligned_cols=58 Identities=21% Similarity=0.410 Sum_probs=40.4
Q ss_pred ChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhc
Q 018366 45 GVFEIIA-KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVS 106 (357)
Q Consensus 45 glfd~L~-~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~ 106 (357)
-++..|. ..++.|..+|++.+++ ++..+.+.++.|+..|+|++.....+ ..|++|+.+
T Consensus 7 ~vL~~l~~~~~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 7 QVLRALAHSDGPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHT--TS-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHccCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 3444555 4459999999999999 99999999999999999986533222 357777753
|
|
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0038 Score=44.59 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=48.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc----ceecchhchh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER----LYGLTPVSKY 108 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~----~y~~t~~~~~ 108 (357)
++++|+..|...+..+..+|.+.+++ +...+++.|+.|+..|+|.......++ .|++|+.+..
T Consensus 1 vRl~Il~~L~~~~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~ 67 (80)
T PF13601_consen 1 VRLAILALLYANEEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGRE 67 (80)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHH
T ss_pred CHHHHHHHHhhcCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHH
Confidence 47888888888668999999999999 899999999999999999975332222 3788887764
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0011 Score=50.14 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=39.6
Q ss_pred EEEcCCcchHHHHHHhhCCCC---eEEEeec-h---HHHHhCCC---CCCceEEEcCCCCC---CC-CC-CEEEeccccc
Q 018366 199 VDVGGGFGVTLSMITSKYPQI---KAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFDS---VP-EG-DAILMKWILH 263 (357)
Q Consensus 199 LDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~v~~~~~D~~~~---~p-~~-D~i~~~~~lh 263 (357)
||||+..|..+..+++..+.. +++.+|. + ...+..++ ..+++++.+|..+. ++ .. |++++=. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988877654 5788887 4 23333332 25799999998652 33 23 8887633 44
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.+ +....-++.+.+.|+|||.+++.|
T Consensus 80 ~~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SY--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CH--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 43 677788999999999999988865
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.016 Score=51.44 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=56.5
Q ss_pred CCceEEEEcCCcchH-HHHHHhh-CCCCeEEEeec-hHHHHhCCC--------CCCceEEEcCCCC-CC--CCCCEEEec
Q 018366 194 NVERLVDVGGGFGVT-LSMITSK-YPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFD-SV--PEGDAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~-~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~~--p~~D~i~~~ 259 (357)
.+.+|+=||||.==+ +..+++. .++..++++|+ |+..+.+++ ..+++|+.+|..+ .. .+.|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 356999999997644 4444443 36778888998 777766643 2579999999876 22 233999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
...- .+.++..++|.++.+.|+||..+++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7553 34456789999999999999988884
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.01 Score=54.25 Aligned_cols=101 Identities=13% Similarity=0.197 Sum_probs=63.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhh-------CCCCeEEEeec-hHHHHhCCC--------CCCceEEEcCCCC-C-CC--
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFD-S-VP-- 251 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~-~p-- 251 (357)
..+..+|+|-.||+|.++.++.+. .+...+.++|+ +.++..++. .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456678999999999999888874 36778889998 555554432 1224578888876 2 22
Q ss_pred CC-CEEEeccccccC--Ch-----------------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 252 EG-DAILMKWILHCW--DD-----------------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 252 ~~-D~i~~~~~lh~~--~~-----------------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.. |+|+++--+-.. .+ ..-..++.++.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 22 888764322111 10 1112588999999999999887654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0058 Score=48.86 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=40.4
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD 248 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 248 (357)
.|+|||||.|.++..+++.+|+.+++.+|. |.+.+.+++. +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999989999997 7776655542 346666665443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.006 Score=56.79 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=41.4
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD 248 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 248 (357)
.+|||++||+|.++..+++... +++++|. +++++.+++. .+++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998864 7888887 7888877652 368888888765
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0018 Score=52.76 Aligned_cols=61 Identities=15% Similarity=0.366 Sum_probs=41.8
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCC---CC--C-CCEEEec
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDS---VP--E-GDAILMK 259 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~---~p--~-~D~i~~~ 259 (357)
.|+|+-||.|..+.++++.+.. ++.+|+ |..++.++. .++|.++.+|+++. +. . .|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999999765 555555 766666654 25899999998872 22 2 2888764
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.02 Score=56.36 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=42.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC--------CeEEEeec-hHHHHhCCCC----C--CceEEEcCCCCC-------CC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ--------IKAVNFDL-PHVVQDAPSY----A--GVEHVGGNMFDS-------VP 251 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~~----~--~v~~~~~D~~~~-------~p 251 (357)
...+|+|.|||+|.++..++...+. ..++++|+ +..+..++.. . .+.+...|+... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 45678887 6666555421 2 345555654431 11
Q ss_pred CC-CEEEec
Q 018366 252 EG-DAILMK 259 (357)
Q Consensus 252 ~~-D~i~~~ 259 (357)
.. |+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 22 888764
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0076 Score=52.28 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=76.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCCCCCCC--CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFDSVPEG--DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~p~~--D~i~~~~~lh~ 264 (357)
+.+.+|+|||||-=-++.......|+..++++|+ ..+++.... ....++...|.....|.. |+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4578999999999999888888889999999999 666665443 256778888998865543 99999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
+..+.. ..--++.+.++ .-.++|..++..-++.. . |....-..++++++.+-|+.+.+..
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPtrSL~gR~-----------~-------gm~~~y~~~fe~~~~~~~~~~~~~~ 243 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPTRSLGGRN-----------K-------GMEQTYSAWFEALAAERGWIVDRLT 243 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES------------------T-------THHHCHHHHHHHHCCTTCEEEEEEE
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEeccccccccCc-----------c-------ccccCHHHHHHHhcccCCceeeeee
Confidence 744332 22233333343 13555544433211100 0 1112235667777777787744443
|
|
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.011 Score=52.48 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=47.2
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.|...++.|+.|||+++|+ ++.-+.|+|+.|+..|++.+. .+++.|++.+...
T Consensus 17 l~IL~~l~~~~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~--~~~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEEREIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQE--GESEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEecHHHH
Confidence 345566665558999999999999 899999999999999999964 2468899887643
|
|
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.027 Score=43.46 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=53.8
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
+..+..++..|...++.|..+||+.+++ ++..+.+.++-|+..|+|.......+ -.+.+|+.+..+..
T Consensus 27 t~~q~~iL~~l~~~~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 27 TEQQWRILRILAEQGSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred CHHHHHHHHHHHHcCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 3445568888887779999999999999 88899999999999999997543222 25888888776554
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.011 Score=39.67 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=40.1
Q ss_pred HHhChhHHHHhCCC--CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 42 IQLGVFEIIAKAGK--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 42 ~~lglfd~L~~~g~--~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
.++.++-.|...++ .|+.+||+.+++ ++..+.+.++.|+..|+|.+..
T Consensus 6 ~q~~vL~~l~~~~~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 6 SQFRVLMALARHPGEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHHSTTSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC
Confidence 34556677777655 899999999999 8999999999999999999864
|
... |
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.012 Score=51.92 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=47.5
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.|...+ +.++.|||+++|+ ++.-+.|+|..|+..|++.++ +++++|++++..-
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d--~~~g~Y~Lg~~~~ 65 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQD--PEDGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEeehHHHH
Confidence 55788888742 3569999999999 899999999999999999974 2357899887643
|
|
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.016 Score=44.76 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=39.6
Q ss_pred hChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc
Q 018366 44 LGVFEIIA-KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 94 (357)
Q Consensus 44 lglfd~L~-~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 94 (357)
..++-+|- .+||.|+++||+.++. +..-+.+-|+-|...|++.++..
T Consensus 30 v~v~~~LL~~~~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 30 VEVYKALLEENGPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHhhcCCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeeee
Confidence 34555555 5679999999999999 89999999999999999998643
|
|
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.011 Score=42.48 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=37.2
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
+.|.++||+.+++ ++..+++++..|...|++.... ..+|.|.++.
T Consensus 25 ~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~-G~~GGy~L~~ 69 (83)
T PF02082_consen 25 PVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR-GRGGGYRLAR 69 (83)
T ss_dssp -BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET-STTSEEEESS
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC-CCCCceeecC
Confidence 6999999999999 9999999999999999999753 3357787654
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.056 Score=44.98 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=63.8
Q ss_pred cccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCCCCEEEecccc
Q 018366 189 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPEGDAILMKWIL 262 (357)
Q Consensus 189 l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~~D~i~~~~~l 262 (357)
.|+.=..++|||+|.|+|..+..-++..- ..++..|+ |-.....+-+ -.+.+...|..-+.+..|+++...++
T Consensus 74 ~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlf 152 (218)
T COG3897 74 HPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLF 152 (218)
T ss_pred CccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeecee
Confidence 34344668999999999998887776642 23444444 4433333321 23666767765522334999999999
Q ss_pred ccCChhHHHHHHHHHHHhCC-CCCEEEEEeeccC
Q 018366 263 HCWDDDHCLRILKNCYKAIP-DNGKVIVMNSIVP 295 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~Lk-pgG~l~i~e~~~~ 295 (357)
+.- ....+++. ..+.|+ .|-.+++-++..+
T Consensus 153 y~~--~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 153 YNH--TEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred cCc--hHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 876 44556677 555554 5566666665443
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.012 Score=55.12 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=40.8
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD 248 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 248 (357)
.+|||++||+|.++..+++... +++++|. +.+++.+++. .+++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4799999999999999998764 6788887 7777776642 368888888754
|
|
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0087 Score=39.84 Aligned_cols=47 Identities=19% Similarity=0.382 Sum_probs=39.9
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
++.++..|.+.|+.|..+||+.+++ ++..+.++++-|+..|++.+..
T Consensus 5 q~~iL~~l~~~~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 5 QFRILRILYENGGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc
Confidence 4455666777678999999999999 9999999999999999999764
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.011 Score=43.95 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=26.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEee
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFD 225 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D 225 (357)
.+...++|||||+|.+..-|.+. +.++.++|
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD 87 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGID 87 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCccccc
Confidence 45678999999999999888876 56788888
|
; GO: 0008168 methyltransferase activity |
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.022 Score=46.75 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
++.|+++||+.+++ ++..+.++|..|...|+|... ++.+|.|.+.
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~-rG~~GGy~La 68 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSV-RGPGGGYLLG 68 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-CCCCCCeecc
Confidence 38999999999999 999999999999999999974 2345678764
|
|
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.018 Score=51.67 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=46.3
Q ss_pred hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 44 LGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 44 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
+.|++.|.+. ++.|+.|||+.+|+ ++.-+.|+|..|+..|+|..+ .+.+.|++.+..
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQV--GELGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEecCHHH
Confidence 3456666653 38999999999999 899999999999999999864 246889987654
|
|
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.01 Score=42.08 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=43.6
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
|+..+.. |+.+..+|+..+++ +...+.++|+.|...|++.. +++.|.+|+.+..++.
T Consensus 11 IL~~l~~-~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~----~~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 11 ILKILSK-GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKK----KDGKYRLTEKGKEFLE 67 (77)
T ss_dssp HHHHH-T-T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEE----ETTEEEE-HHHHHHHH
T ss_pred HHHHHHc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeC----CCCEEEECccHHHHHH
Confidence 4455554 58999999999999 99999999999999999974 4789999999987764
|
|
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.019 Score=38.53 Aligned_cols=45 Identities=27% Similarity=0.239 Sum_probs=36.7
Q ss_pred ChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 45 GVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 45 glfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
.|.+.|.. .+|.|..|||+++|+ ....++++|..|+..|.+...+
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL----SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 35566666 569999999999999 8999999999999999999743
|
|
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.014 Score=40.42 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=36.7
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
|.+.|.+.|.+|..+||..+++ ++..++.+|+.|+..|.|.+.
T Consensus 5 i~~~l~~~~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 5677888779999999999999 999999999999999999975
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.027 Score=44.73 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++.|+++||+.+++ ++..++++|+.|...|++... ++.+|.|.++.
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~-~G~~Ggy~l~~ 69 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSV-RGPGGGYQLGR 69 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE-eCCCCCEeccC
Confidence 38999999999999 999999999999999999864 23356787643
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.021 Score=51.09 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=46.6
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
+.|++.|.+.+ +.|+.|||+.+|+ ++.-+.|+|..|+..|+|.++ ...+.|++.+..
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQD--SQLGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEEecHHH
Confidence 44666666543 7999999999999 899999999999999999864 246789887654
|
|
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.023 Score=50.23 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=46.6
Q ss_pred hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.+... +|.|+.|||+.+|+ ++.-+.|+|..|+..|+|.+ + ++.|++.+...
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~---~-~~~Y~lG~~~~ 68 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTS---D-GRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe---C-CCEEEecHHHH
Confidence 4567777653 38999999999999 89999999999999999985 2 57899887643
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.013 Score=49.15 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=61.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---C---CCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---V---PEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~---p~~-D~i~~ 258 (357)
...++||+=||+|.++.+.+.+.-. +++.+|. +..+...++. .++.++..|.+.. . ... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 3579999999999999998888643 6777787 5555555442 3588888997652 1 223 99987
Q ss_pred ccccccCChhH-HHHHHHHHH--HhCCCCCEEEEEee
Q 018366 259 KWILHCWDDDH-CLRILKNCY--KAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~~lh~~~~~~-~~~~L~~~~--~~LkpgG~l~i~e~ 292 (357)
-=-... .. ..+++..+. ..|+++|.+++ |.
T Consensus 121 DPPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~-E~ 153 (183)
T PF03602_consen 121 DPPYAK---GLYYEELLELLAENNLLNEDGLIII-EH 153 (183)
T ss_dssp --STTS---CHHHHHHHHHHHHTTSEEEEEEEEE-EE
T ss_pred CCCccc---chHHHHHHHHHHHCCCCCCCEEEEE-Ee
Confidence 543332 23 367788877 67888776666 44
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.03 Score=49.90 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=48.3
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhh
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYF 109 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l 109 (357)
+.|++.|...+ +.|..|||+.+|+ ++.-+.|+|+.|+..|++.++. +++.|++++....+
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~--~~~~Y~Lg~~~~~l 74 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA--SDDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec--CCCcEEEcHHHHHH
Confidence 44666665543 6999999999999 8999999999999999999742 36789998765433
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.087 Score=50.29 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=81.9
Q ss_pred hhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCC--CceEEEEcCCcchHHHHHHhhC----CCCeEEEeec-hH
Q 018366 156 IFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQN--VERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL-PH 228 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~-~~ 228 (357)
.|+-|++|+-....|+++. ...+.+..+..+. ...|+-+|+|-|-+..+..+.- ..++.+.++- |.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 3555677776666666533 3455555553333 5688999999998776655432 3445666665 66
Q ss_pred HHHhCCC------CCCceEEEcCCCC-CCC-C-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 229 VVQDAPS------YAGVEHVGGNMFD-SVP-E-GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 229 ~~~~a~~------~~~v~~~~~D~~~-~~p-~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.+...+. ..+|+++..|+.+ .-| . .|+++.-..=.+-+.|-.++.|.-+.+.|||+|.-+=
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 5554433 2689999999998 444 2 3888754433333334456899999999999976553
|
|
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.045 Score=40.52 Aligned_cols=65 Identities=26% Similarity=0.344 Sum_probs=49.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC---Ccceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG---ERLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~~~~l~ 110 (357)
.++.++..|...++.|..+|++.+++ ++..+.+.++-|+..|+|......+ ...|.+|+.+..+.
T Consensus 11 ~~~~il~~l~~~~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 11 TQFLVLRILYEEGPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 35667788876668999999999999 8889999999999999999652211 12466666655444
|
|
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.037 Score=47.17 Aligned_cols=61 Identities=31% Similarity=0.487 Sum_probs=48.0
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC-----Ccceecchhchh
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG-----ERLYGLTPVSKY 108 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-----~~~y~~t~~~~~ 108 (357)
--|.-.|.+.||.|+.|||+++|+ ++..+++.|+.|+..|++....... .-.|++|..+..
T Consensus 14 ~~il~lL~~~g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 14 ERILELLKKSGPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHHhccCCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 345667777789999999999999 8999999999999999999753221 124777776654
|
|
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.037 Score=44.70 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=40.0
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
+.|+++||+..++ ++.+|++++..|...|+|.... ..+|.|++...
T Consensus 25 ~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r-G~~GGy~Lar~ 70 (150)
T COG1959 25 PVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR-GKGGGYRLARP 70 (150)
T ss_pred cccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec-CCCCCccCCCC
Confidence 7899999999999 9999999999999999999863 33788886543
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.074 Score=36.16 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++.|..+||+.+|+ .+..+.+.|+.|...|++... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~---~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR---GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec---CCCeEEeCC
Confidence 48999999999999 899999999999999999963 236777653
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.16 Score=46.63 Aligned_cols=103 Identities=20% Similarity=0.223 Sum_probs=77.2
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCC---CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSV---PE 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~---p~ 252 (357)
.+++... .+.+|+|.=+|-|.++..+++...- +++.+|+ |..++..++. .+++.+.||..+-. +.
T Consensus 181 Rva~~v~---~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~ 256 (341)
T COG2520 181 RVAELVK---EGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGV 256 (341)
T ss_pred HHHhhhc---CCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcccc
Confidence 4444433 4679999999999999999987644 3888888 8777766552 45889999998833 33
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
+|-|++.+.- ...+++..+.+.+++||.+...+...++
T Consensus 257 aDrIim~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 257 ADRIIMGLPK------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred CCEEEeCCCC------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 5999987643 2346788888888999999998876544
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.032 Score=50.03 Aligned_cols=98 Identities=19% Similarity=0.308 Sum_probs=68.0
Q ss_pred CceEEEEcCCcchHHHHHHhhC--------------------CCCeEEEeec---hHHHHhCCC----C-----------
Q 018366 195 VERLVDVGGGFGVTLSMITSKY--------------------PQIKAVNFDL---PHVVQDAPS----Y----------- 236 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~----~----------- 236 (357)
..+||-||||.|.-..+++..+ +.+.++.+|+ ..++..... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999987666665544 2357888887 455544321 0
Q ss_pred --------CCceEEEcCCCC-CCC--------CC-CEEEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 237 --------AGVEHVGGNMFD-SVP--------EG-DAILMKWILHC---WDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 237 --------~~v~~~~~D~~~-~~p--------~~-D~i~~~~~lh~---~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-+++|...|++. ..+ .. ++|.+-.+++- -+.....++|.++-..++||..|+|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 137899999987 221 12 67765555543 2345667999999999999999999986
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.068 Score=50.07 Aligned_cols=99 Identities=10% Similarity=0.099 Sum_probs=71.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCCC----CC--C-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDSV----PE--G-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~----p~--~-D~i~ 257 (357)
..++|||+=|=||.++...+...- .+++.+|. ...++.++++ .++.++.+|+++.+ .. . |+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 478999999999999998887643 27888998 6677777652 45789999998732 22 2 9997
Q ss_pred ecc-cc-----ccCC-hhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 258 MKW-IL-----HCWD-DDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 258 ~~~-~l-----h~~~-~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+-= .+ .-|+ ..+-..++..+.+.|+|||.++++...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 511 00 0011 234568899999999999999997753
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.052 Score=48.06 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=66.7
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCCC--C
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPEG--D 254 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~~--D 254 (357)
..++.+++-||+|.|.+.+...+. +.+ .+..+|+ ..+++..++ .++|.++.||-+. ..+.+ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 357789999999999999998887 554 3566666 455554443 2689999998665 34343 8
Q ss_pred EEEeccccccCChh--HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 255 AILMKWILHCWDDD--HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 255 ~i~~~~~lh~~~~~--~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+|+.-..=---+.. -...+..-+.++|||||++++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 88753211111111 123566778899999999998764
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.055 Score=50.60 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=66.7
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCCC------CCceEEEcCCCCCC---CC-CCEEEeccccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSV---PE-GDAILMKWILH 263 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~---p~-~D~i~~~~~lh 263 (357)
.+|||+-||+|..+..++.+.++. .++..|+ |..++.+++. .++++..+|....+ .. .|+|.+-- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 589999999999999999986543 6788888 7777666542 34778888877622 12 39888733 2
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.. ...++..+.+.+++||.|++.-
T Consensus 124 Gs----~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 GT----PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CC----cHHHHHHHHHhcccCCEEEEEe
Confidence 22 2368889999999999999973
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.047 Score=43.80 Aligned_cols=65 Identities=23% Similarity=0.176 Sum_probs=48.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcc---eecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERL---YGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~---y~~t~~~~~l~ 110 (357)
.+..++-.|...++.|..+||+.+++ ++..+.+.++-|+..|+|.+....++++ ..+|+.+..+.
T Consensus 41 ~q~~vL~~l~~~~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 41 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence 34456777776668999999999999 9999999999999999999864322322 45555555443
|
|
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.04 Score=37.50 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=30.9
Q ss_pred HhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 51 AKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 51 ~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+.| |.|+.|||+.+|+. .+..+.+.|++|+..|+|...
T Consensus 20 ~~~G~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 20 EENGYPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp HHHSS---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred HHcCCCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 3345 78999999999992 488999999999999999964
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.054 Score=46.22 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=49.0
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc-CCCc----ceecchhchhhh
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-SGER----LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~-~~~~----~y~~t~~~~~l~ 110 (357)
+..|+..|...|+.|..+||+.+++ ++..+++.|+.|+..|+|..... .+.| .|.+|+.+....
T Consensus 3 r~~IL~~L~~~~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 3 KEDILSYLLKQGQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 3457777876679999999999999 89999999999999999987521 1122 367777765444
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.071 Score=35.66 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=40.3
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
|+..|. .++.|..+|++.+++ ++..+.+.|+.|...|++..........|..+.
T Consensus 2 il~~l~-~~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 55 (66)
T smart00418 2 ILKLLA-EGELCVCELAEILGL----SQSTVSHHLKKLREAGLVESRREGKRVYYSLTD 55 (66)
T ss_pred HHHHhh-cCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeeecCCEEEEEEch
Confidence 344555 358999999999999 888999999999999999965322233454443
|
|
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.054 Score=34.04 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=34.9
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
+.|..+||+.+++ ++..+.+.|+.|...|++... .+.|.+
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~----~~~~~i 47 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISRE----GGRIVI 47 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe----CCEEEE
Confidence 7899999999999 899999999999999999852 356654
|
|
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.067 Score=42.14 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++.|.++||+.+++ ++..++++|+.|+..|+|.... +.++.|.++.
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~-g~~ggy~l~~ 69 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR-GPGGGYRLAR 69 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc-CCCCCccCCC
Confidence 38999999999999 9999999999999999998642 2245676543
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.081 Score=47.83 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=52.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD 248 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~ 248 (357)
.+++++.+. ..+...++|.=+|.|..+..+++..|+.+++++|. |.+++.+++. .|+.++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 457777776 55667999999999999999999988789999998 7787776542 467777777654
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.11 Score=43.20 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=40.6
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.|+++|...|++|.++||..+|+ +...++++|..|...|++...
T Consensus 26 ~Vl~~L~~~g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 26 EVLKALIKKGEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 38999988779999999999999 899999999999999999953
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.15 Score=42.67 Aligned_cols=84 Identities=17% Similarity=0.297 Sum_probs=61.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC---------CCceEEEcCCCC-C----CC------CC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY---------AGVEHVGGNMFD-S----VP------EG 253 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~~v~~~~~D~~~-~----~p------~~ 253 (357)
+...|+.+|||-=.....+....++++++.+|.|++++..++. .+++++..|+.+ . +. ..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 4458999999999999999988889999999999988765541 235789999986 1 11 12
Q ss_pred -CEEEeccccccCChhHHHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNC 277 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~ 277 (357)
-++++-.++.+++.++...+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 688889999999999999998876
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.061 Score=45.92 Aligned_cols=59 Identities=27% Similarity=0.349 Sum_probs=48.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
.+..++..|.+.|+.+..+||+.+++ ++..+++.|+.|...|++.+... ....|.+|+.
T Consensus 144 ~~~~IL~~l~~~g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~~-r~~~~~lT~~ 202 (203)
T TIGR01884 144 EELKVLEVLKAEGEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKGR-KGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEcC-CccEEEeCCC
Confidence 34567777777568999999999999 88999999999999999997531 3566777764
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.28 Score=43.92 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=96.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC--CCCeEEEeechHHHHhCCC----C------------------------CCceE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDLPHVVQDAPS----Y------------------------AGVEH 241 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~----~------------------------~~v~~ 241 (357)
.++...|+.+|||.-.....+...+ ++++++.+|.|.++++--. . ++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 3467899999999999999999888 7889999999776654221 0 23445
Q ss_pred EEcCCCC--CCC---------CC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh
Q 018366 242 VGGNMFD--SVP---------EG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS 308 (357)
Q Consensus 242 ~~~D~~~--~~p---------~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~ 308 (357)
+..|..+ .+. .+ -+++.--+|.++++++...+++-+.+..+ .+.+++.|.+.+.++ +..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~-------Fg~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDR-------FGK 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCCh-------HHH
Confidence 5555543 110 01 34555567888888999899999988774 578888898875542 112
Q ss_pred hhhhhhhh--hcCC--CccCCHHHHHHHHHHcCCceeEEeec
Q 018366 309 LLDVLLMT--RDGG--GRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 309 ~~~~~~~~--~~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
.|--+... +... -...|.+..+.-|.++||+-+.+...
T Consensus 237 vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 22111110 0001 13457888888889999998887654
|
|
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.071 Score=40.52 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=48.5
Q ss_pred HHHHhChhHHHH----hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcc---eecchhchhhh
Q 018366 40 AAIQLGVFEIIA----KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERL---YGLTPVSKYFV 110 (357)
Q Consensus 40 ~a~~lglfd~L~----~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~---y~~t~~~~~l~ 110 (357)
+..++.++..|. ..|+.|..+||..+++ ++..+.+.++.|+..|+|.+...+.+.+ +.+|+.+..++
T Consensus 24 s~~q~~vL~~l~~~~~~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 24 SLEELLILYYLGKLENNEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred CHHHHHHHHHHHhhhccCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 344455666666 4358999999999999 9999999999999999999764332222 44555554433
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.043 Score=35.55 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=34.5
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHH
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRL 82 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~ 82 (357)
-.+|.+|++.|-||.=. ..|..|||+.+|+ .+..+...||-
T Consensus 6 ~e~L~~A~~~GYfd~PR---~~tl~elA~~lgi----s~st~~~~LRr 46 (53)
T PF04967_consen 6 REILKAAYELGYFDVPR---RITLEELAEELGI----SKSTVSEHLRR 46 (53)
T ss_pred HHHHHHHHHcCCCCCCC---cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 35899999999999833 5899999999999 77777777764
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.27 Score=39.81 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=46.7
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
|...+...++.+..+||+.+++ ++..+.++++.|+..|+|... ....+.+|+.+..+.
T Consensus 42 I~~~l~~~~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---~~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAEVGEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---PYRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHhcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---cCCceEECchHHHHH
Confidence 5566666568999999999999 899999999999999999863 234677777766544
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.054 Score=51.60 Aligned_cols=98 Identities=15% Similarity=0.278 Sum_probs=62.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEe---echHHHHhCCCCCCceEEEcCCCC---CCCCC-CEEEecccccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNF---DLPHVVQDAPSYAGVEHVGGNMFD---SVPEG-DAILMKWILHC 264 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~~~v~~~~~D~~~---~~p~~-D~i~~~~~lh~ 264 (357)
....+.|+|..+|.|.++.+|.+. | +-+..+ +-+..+...-+++=|. +-+|-.+ .+|.. |++...+++..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRGLIG-~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRGLIG-VYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcccch-hccchhhccCCCCcchhheehhhhhhh
Confidence 456689999999999999999764 2 222111 1122222111111111 2234444 34555 99999888887
Q ss_pred CChh-HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 265 WDDD-HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 265 ~~~~-~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.+. +...+|-++-|.|+|||.++|-|.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 6533 466899999999999999999654
|
; GO: 0008168 methyltransferase activity |
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.08 Score=36.65 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=43.3
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
+..|+..+... +.+..+|++.+++ +...+.+.|+.|...|++..........|++++
T Consensus 9 ~~~il~~l~~~-~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLEG-PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHC-CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 34466666664 5999999999999 888999999999999999975322234566554
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.071 Score=43.23 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=45.0
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
+++++.+.+-.. ..++.|+++||+..++ ++..|+++|..|...|+|.... ..+|.|.++.
T Consensus 9 YAlr~L~~LA~~----~~~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r-G~~GGy~La~ 68 (153)
T PRK11920 9 YAIRMLMYCAAN----DGKLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR-GRNGGVRLGR 68 (153)
T ss_pred HHHHHHHHHHhC----CCCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec-CCCCCeeecC
Confidence 345555544322 1237899999999999 9999999999999999999763 3467787643
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.089 Score=47.58 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=48.4
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMF 247 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~ 247 (357)
...++++.+. ..+...++|.=-|.|..+.++++.+|+.+++++|. |.+++.+++. +|+.++.++|.
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 3567888777 66778999999999999999999999999999999 8888766542 56777777654
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.086 Score=42.17 Aligned_cols=55 Identities=25% Similarity=0.275 Sum_probs=45.2
Q ss_pred HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 49 IIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 49 ~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
.+...|+.++.+||+.+++ .+..+.+.++.|...|+|... ..+.|.+|+.+....
T Consensus 16 l~~~~~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~---~~~~i~LT~~G~~~a 70 (142)
T PRK03902 16 LIEEKGYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYE---KYRGLVLTPKGKKIG 70 (142)
T ss_pred HHhcCCCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEe---cCceEEECHHHHHHH
Confidence 4445568999999999999 899999999999999999853 246799998886443
|
|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.085 Score=34.86 Aligned_cols=44 Identities=23% Similarity=0.431 Sum_probs=39.7
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.|.+.|.+.+..|+++||+.+++ .+.-++|=|..|...|++.+.
T Consensus 4 ~Il~~l~~~~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 4 QILELLKEKGKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHHcCCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 36777888789999999999999 899999999999999999964
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.083 Score=44.85 Aligned_cols=55 Identities=15% Similarity=0.324 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 34 LPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 34 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.-++|...++..|+..|.+.||..+.|||+++|+ ++.-+..-+..|+..|++..+
T Consensus 16 v~kalaS~vRv~Il~lL~~k~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 16 VLKALASKVRVAILQLLHRKGPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeee
Confidence 4467888999999999999889999999999999 888999999999999999864
|
|
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.098 Score=33.48 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=37.1
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+++.|.+.++.|+.+|++.+++ .+..+.+.|+.|...|++...
T Consensus 5 il~~l~~~~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~ 47 (53)
T smart00420 5 ILELLAQQGKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV 47 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4555555568999999999999 899999999999999999963
|
|
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.073 Score=40.94 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=45.4
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
-+.+--.+.|+..|...+|.|+.|+|+..|- +...++|-|+.|...|++..+
T Consensus 60 ~vLsp~nleLl~~Ia~~~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 60 RVLSPRNLELLELIAQEEPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred HHhChhHHHHHHHHHhcCcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 3444556778889998889999999999999 899999999999999999975
|
|
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.072 Score=38.92 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=47.2
Q ss_pred hhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 46 VFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
|+..|.. |+....||.+.+ ++ .+..|.+-|+.|+..|++.+....+. -.|++|+.+..+..
T Consensus 10 IL~~l~~-g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ-GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT-SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh-CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 5566676 699999999999 88 88899999999999999997543221 25999998886664
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.09 Score=42.00 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=45.0
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
++|++.+.++.+. .+.+.|.++||+.+|+ ++..+++.|..|...|++.... ..+|.|.+.
T Consensus 9 YAl~~~i~la~~~---~g~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~-G~~GG~~l~ 68 (141)
T PRK11014 9 YGLRALIYMASLP---EGRMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR-GKNGGIRLG 68 (141)
T ss_pred HHHHHHHHHhcCC---CCCccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec-CCCCCeeec
Confidence 3555555555432 2237899999999999 9999999999999999999763 235677654
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.3 Score=42.72 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=62.7
Q ss_pred CC-CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC------------CCceEEEc---CCCC---CCCC
Q 018366 192 FQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY------------AGVEHVGG---NMFD---SVPE 252 (357)
Q Consensus 192 ~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------~~v~~~~~---D~~~---~~p~ 252 (357)
++ ...+||++|+|+|..+...+. .....++.-|.+......+.. ..+.+... +... -.|.
T Consensus 83 ~~~~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred ccccceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 44 467899999999965555444 456678778876554433221 12333332 2222 1233
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 253 -GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 253 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.|+|+.+.++++- +....+++.++..|..++.+++.....
T Consensus 162 ~~DlilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 162 PFDLILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred cccEEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 5999999998764 556678888888998888555544433
|
|
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.21 Score=36.63 Aligned_cols=87 Identities=13% Similarity=0.172 Sum_probs=54.3
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc------cCCHHHHHHH
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR------ERTKKEFTEL 332 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~t~~e~~~l 332 (357)
-++|-|++.++..++|+++.+.-+ |.+++.= .|.. .+...+.. ....++++. ...++++.+.
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~--~~~ifTf--AP~T-------~~L~~m~~-iG~lFP~~dRsp~i~~~~e~~l~~~ 69 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR--GSLIFTF--APRT-------PLLALMHA-IGKLFPRPDRSPRIYPHREEDLRRA 69 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc--CcEEEEE--CCCC-------HHHHHHHH-HhccCCCCCCCCcEEEeCHHHHHHH
Confidence 356678999999999999988654 7777632 1221 11111111 111133332 2368999999
Q ss_pred HHHcCCceeEEeecCCcee---EEEEeC
Q 018366 333 AIAAGFKHINFASCVCNLY---IMEFFK 357 (357)
Q Consensus 333 l~~aGf~~~~~~~~~~~~~---vie~~~ 357 (357)
++++||++.+......+++ .+|++|
T Consensus 70 l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 70 LAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHhCCCeeeecccccCcChHHHHhhccC
Confidence 9999999998877765544 555553
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.46 Score=44.08 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=71.4
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCe---------------------------------------E
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK---------------------------------------A 221 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~---------------------------------------~ 221 (357)
.+..++. +.+|.+...++|==||+|+++++.+...+|+. +
T Consensus 179 LAaAil~-lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 179 LAAAILL-LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHH-HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 3444554 44587778999999999999999888776422 5
Q ss_pred EEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCC-CC-CEEEecccccc-CChh-HHH----HHHHHHHHhCCCC
Q 018366 222 VNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVP-EG-DAILMKWILHC-WDDD-HCL----RILKNCYKAIPDN 284 (357)
Q Consensus 222 ~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p-~~-D~i~~~~~lh~-~~~~-~~~----~~L~~~~~~Lkpg 284 (357)
++.|+ +.+++.|+.+ +.|+|..+|+.. ..| +. |+|+++----- +.++ .+. .+.+.+++.++--
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 68888 8888887753 458999999887 333 33 99988542110 1122 222 3444455555555
Q ss_pred CEEEEEe
Q 018366 285 GKVIVMN 291 (357)
Q Consensus 285 G~l~i~e 291 (357)
++.+++.
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 6666654
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.06 Score=45.59 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=43.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD 248 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~ 248 (357)
....|+|.-||.|..+...+..+|.+-.+.+| |.-+..|+.. +||.|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiD-PikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDID-PVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEecc-HHHHHHHhccceeecCCceeEEEechHHH
Confidence 34689999999999999999999876566666 6666666652 689999999987
|
|
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.11 Score=44.62 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=48.6
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
+.-.+.+...+|..+||+.+++ ++..+.+.|+.|+..|++.+.....+..+.+|+.+..++.
T Consensus 12 llg~l~~~~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll~ 73 (217)
T PRK14165 12 LLGAVNNTVKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIVPRGQLITITEKGLDVLY 73 (217)
T ss_pred HHhccCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHHH
Confidence 3345555446899999999999 9999999999999999999764334566888887775553
|
|
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.12 Score=40.70 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
++.|+.+||+++++ ++..+.+.|+.|...|++.... ...+.|.+
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~-g~~ggy~l 67 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR-GVEGGYTL 67 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC-CCCCChhh
Confidence 37999999999999 9999999999999999998632 22455655
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.14 Score=44.97 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=58.0
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
++....+..|+=.|.+ ||.|.+||-..+++ .+..+..-++-|...|++.+ +++.|++|..+..++.
T Consensus 9 if~SekRk~lLllL~e-gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~----~~~~Y~LS~~G~iiv~ 74 (260)
T COG4742 9 LFLSEKRKDLLLLLKE-GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQ----EGDRYSLSSLGKIIVE 74 (260)
T ss_pred HHccHHHHHHHHHHHh-CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEe----cCCEEEecchHHHHHH
Confidence 5566778889999998 69999999999999 78888888999999999996 3799999999987765
|
|
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.16 Score=35.55 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=39.4
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
|=|.|...|..++.+||.+++. ++..++.+|..|+.+|-+.+..
T Consensus 7 lRd~l~~~gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHHcCcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec
Confidence 3467777789999999999999 9999999999999999999763
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.76 Score=42.87 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=67.1
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC--CeEEEeec-hHHHHhCCC----C--CCceEEEcCCCC---CCCC---CCEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPS----Y--AGVEHVGGNMFD---SVPE---GDAI 256 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~---~~p~---~D~i 256 (357)
..+..+|||..++.|.=+.++++..++ ..++.+|. +.-+...++ . .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 567789999999999999999998876 44578887 333332222 1 345677776543 1221 2665
Q ss_pred Ee------cccc-------ccCChhHH-------HHHHHHHHHhCCCCCEEEEEeecc
Q 018366 257 LM------KWIL-------HCWDDDHC-------LRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 257 ~~------~~~l-------h~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
++ ..++ ..++.++. .++|+.+.+.|||||+|+-.+-.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 42 2233 33433322 478999999999999999876554
|
|
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.15 Score=34.77 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=41.8
Q ss_pred hhHHHHhCC-CCCHHHHHHHhCcCCCCC--cchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 46 VFEIIAKAG-KLSAPEIAAQLQAQNVKA--PMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 46 lfd~L~~~g-~~t~~~la~~~~~~~~~~--~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
|++.|.+.+ |++..+|++.+.. ...+ +..+++.|++|...|++.. .+.+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~-~g~~~se~avRrrLr~me~~Glt~~---~g~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKL-RGEELSEEAVRRRLRAMERDGLTRK---VGRQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHh-cChhhhHHHHHHHHHHHHHCCCccc---cCCcccccCHHHH
Confidence 455666543 9999999999976 2323 4789999999999997774 2344556776654
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.4 Score=45.62 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=69.0
Q ss_pred ceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhC-----CCCCCceEEEcCCCC-CCCCC--CEEEeccccccCC
Q 018366 196 ERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDA-----PSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWD 266 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a-----~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~ 266 (357)
.+++-+|||.-.+...+-+.. ++++.+.++ +.+++.. ++++...+...|+.. .+++. |+|+....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S-~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSS-SVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceecccc-HHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 389999999998887776653 444444443 3333322 233567888889888 77764 9999999998853
Q ss_pred -hh-------HHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 267 -DD-------HCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 267 -~~-------~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
++ .....+..+.++|+|||+.+.+...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 22 2335688999999999999988884
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.32 Score=38.52 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=66.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~ 253 (357)
+++++.++ -.+..+.+|+|.|.|....+.++.. -...+++++ |=.+...+- ..+..|..-|+++ ++.+.
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 45677666 3455799999999999888777664 234555665 433333321 1467888888887 66554
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
.++++- + +.-...+-.+++.-|+.+.+++.+-+-.|+
T Consensus 140 ~~vviFg-a-----es~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFG-A-----ESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEee-h-----HHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 343331 1 112234455777788889999988775554
|
|
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.16 Score=40.20 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=42.8
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
.|++.|. .|+.|..+||+++|+ ....++-.|..|+..|.+.++..+....|.+.+
T Consensus 15 eILE~Lk-~G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV~~G~~tyw~l~~ 69 (165)
T PHA02943 15 KTLRLLA-DGCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKVEIGRAAIWCLDE 69 (165)
T ss_pred HHHHHHh-cCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEEeecceEEEEECh
Confidence 3566674 468999999999999 888999999999999999987533234454433
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.23 Score=45.86 Aligned_cols=108 Identities=19% Similarity=0.364 Sum_probs=72.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec---hHHHHhCC-C------------CCCceEEEcCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL---PHVVQDAP-S------------YAGVEHVGGNMF 247 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~-~------------~~~v~~~~~D~~ 247 (357)
.+.+.+. ..+.....|+|+|.|.....++.....-.-+++.+ |.-+.... + ...++.+.+++.
T Consensus 183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 4455555 56778999999999999888777654334444444 33222211 1 134778888887
Q ss_pred CC------CCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 248 DS------VPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 248 ~~------~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
++ .+.+++|+.+++.. +++. ..=++++..-+++|.+++-.++..+
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F--dp~L-~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF--DPEL-KLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC--CHHH-HHhhHHHHhhCCCcceEeccccccc
Confidence 73 22349999999874 3343 3345588888999999999888776
|
|
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.21 Score=36.27 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=50.2
Q ss_pred HHHHHhChhHHHHhC-C-CCCHHHHHHHhCcCCCCCcchHHHHH----------HHHhcCcce-eeeccCCCcceecchh
Q 018366 39 QAAIQLGVFEIIAKA-G-KLSAPEIAAQLQAQNVKAPMMLDRML----------RLLVSHRVL-ECSVSSGERLYGLTPV 105 (357)
Q Consensus 39 ~~a~~lglfd~L~~~-g-~~t~~~la~~~~~~~~~~~~~l~~~L----------~~L~~~g~l-~~~~~~~~~~y~~t~~ 105 (357)
..=++..|+..|.+. + +.++.|||..++. ++..+..-| +.|+.+|++ .+....+...|++|+.
T Consensus 7 rS~~R~~vl~~L~~~yp~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~ 82 (90)
T PF07381_consen 7 RSKVRKKVLEYLCSIYPEPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEK 82 (90)
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChh
Confidence 355677788888876 3 8999999999999 777776655 368999999 4332234557999988
Q ss_pred chhhh
Q 018366 106 SKYFV 110 (357)
Q Consensus 106 ~~~l~ 110 (357)
+..+.
T Consensus 83 G~~~~ 87 (90)
T PF07381_consen 83 GKRIA 87 (90)
T ss_pred hhhHH
Confidence 76544
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.15 Score=38.45 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=41.5
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.++++.|..+||+.+|+ ++..+.+.++.|...|++..
T Consensus 4 ~D~~il~~L~~~~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKDARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 45678888888778999999999999 99999999999999999993
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.91 Score=36.21 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=46.5
Q ss_pred hhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 46 VFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 46 lfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|++...+.+. ...+|+.+..+..
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 56666653 36899999999999 899999999999999999986432222 3556666665443
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.19 Score=42.86 Aligned_cols=97 Identities=22% Similarity=0.281 Sum_probs=65.0
Q ss_pred cccCCCCceEEEEcCCcchHHHHHHhhCCC----C-----eEEEeechHHHHhCCCCCCceEEEcCCCCC---------C
Q 018366 189 YEGFQNVERLVDVGGGFGVTLSMITSKYPQ----I-----KAVNFDLPHVVQDAPSYAGVEHVGGNMFDS---------V 250 (357)
Q Consensus 189 l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~----~-----~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~ 250 (357)
+..+.+..|++|+....|.++.-+.++.-. . .++.+|+..|... ++|.-+.+|+..+ +
T Consensus 36 f~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 36 FQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHHHh
Confidence 333456789999999999998888876521 1 2788887665442 4577788888762 1
Q ss_pred CC--CCEEEecc-----ccccCChh----HHHHHHHHHHHhCCCCCEEEE
Q 018366 251 PE--GDAILMKW-----ILHCWDDD----HCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 251 p~--~D~i~~~~-----~lh~~~~~----~~~~~L~~~~~~LkpgG~l~i 289 (357)
.. +|+|+|-. -+|+++.- -....|.-...+|||||.++-
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 22 39998854 47776421 123445556678999999875
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.8 Score=36.13 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=74.1
Q ss_pred CCceEEEEcCCcchHHHHHH----hhCCCCeEEEeec--hHHHHhCCCCCCceEEEcCCCCC-CC-------CC--CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMIT----SKYPQIKAVNFDL--PHVVQDAPSYAGVEHVGGNMFDS-VP-------EG--DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~----~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~D~~~~-~p-------~~--D~i~ 257 (357)
++..|+++|.-.|..+...+ ......+++++|+ .+.-..+++.++|.|+.++-.++ +. .. -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 36799999998886554443 3334467777776 22223344468999999987662 11 11 6778
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCC
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIP 298 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~ 298 (357)
|-..-|+. +.+...|+-...+|.-|.++++-|...++-+
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 88888887 8888999999999999999999998887644
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.037 Score=41.58 Aligned_cols=85 Identities=15% Similarity=0.269 Sum_probs=43.3
Q ss_pred CEEEeccccc----cCChhHHHHHHHHHHHhCCCCCEEEEEeec-cCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 254 DAILMKWILH----CWDDDHCLRILKNCYKAIPDNGKVIVMNSI-VPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 254 D~i~~~~~lh----~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
|+|+|..|-- +|.|+-...+++++++.|+|||.+++ |+- +.+..... .......-.+ ..-...+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~---~~~~~~~~n~-----~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAK---RLSEEIRENY-----KSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTT---TS-HHHHHHH-----HH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHh---hhhHHHHhHH-----hceEEChHH
Confidence 7777765432 36788899999999999999999888 321 10000000 0000010111 111235667
Q ss_pred HHHHHHH--cCCceeEEeecC
Q 018366 329 FTELAIA--AGFKHINFASCV 347 (357)
Q Consensus 329 ~~~ll~~--aGf~~~~~~~~~ 347 (357)
+...|.+ .||..++.....
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8888887 699998765553
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=92.58 E-value=2.8 Score=36.46 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=64.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCCCCCC---C--CEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFDSVPE---G--DAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~p~---~--D~i~~~~~l 262 (357)
.+++||=+|=..- .+.+++-..+..+++++|+ +.+++..++ .-.|+.+..|+.+++|. + |+++.-=.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 3578999985544 3333444455568888888 555554332 12488999999998885 2 99886332
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
++.+-..-++.+..++||..|.....-....+. .. ...-++++.+.+.||.+.+
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-----------s~-------------~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-----------SP-------------DKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------------H-------------HHHHHHHHHHHTS--EEEE
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-----------cH-------------HHHHHHHHHHHHCCcCHHH
Confidence 344677899999999999666333332221110 00 0123456777788888888
Q ss_pred Eeec
Q 018366 343 FASC 346 (357)
Q Consensus 343 ~~~~ 346 (357)
+.+.
T Consensus 176 ii~~ 179 (243)
T PF01861_consen 176 IIPD 179 (243)
T ss_dssp EEEE
T ss_pred HHhh
Confidence 7664
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.57 Score=39.06 Aligned_cols=96 Identities=10% Similarity=-0.031 Sum_probs=61.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCC---CC-C--CCEEEec
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDS---VP-E--GDAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~---~p-~--~D~i~~~ 259 (357)
...++||+=+|+|.++.+.+.+.-. +++.+|. .......++ ..++.++..|...- .+ . .|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA-RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 3579999999999999999998643 6677775 444444433 25678888887641 11 2 2999885
Q ss_pred cccccCChhHHHHHHHH--HHHhCCCCCEEEEEe
Q 018366 260 WILHCWDDDHCLRILKN--CYKAIPDNGKVIVMN 291 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~--~~~~LkpgG~l~i~e 291 (357)
=-.+. .--+....+.. -..+|+|+|.+++=.
T Consensus 122 PPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAK-GLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 55541 11111222222 346799988877733
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.23 Score=46.56 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=52.1
Q ss_pred CCceEEEcCCCC---CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 237 AGVEHVGGNMFD---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 237 ~~v~~~~~D~~~---~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
++|+++.+++.+ ..|.+ |.+++.+.+.+++++...+.++.+.+.++|||+++.-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 789999998877 34444 9999999999999999999999999999999999997765543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.14 Score=29.25 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcce
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 89 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l 89 (357)
|+|-.|||+.+|+ .++-++|.|.-|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5789999999999 899999999999998875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.25 Score=33.04 Aligned_cols=37 Identities=24% Similarity=0.456 Sum_probs=32.9
Q ss_pred hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 52 KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 52 ~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+.++++..+||+.+++ .+.-+...++-|...|++..+
T Consensus 19 ~~~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 19 EGGPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp CTSSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 4459999999999999 899999999999999999974
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.14 Score=45.91 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=66.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCCCC-----CC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDSVP-----EG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~p-----~~-D~i~~ 258 (357)
...+|||+=|=||.++...+... -.+++.+|. ..+++.+++. .+++++..|+++.+. .. |+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 45799999999999999877643 346899998 6677766642 478999999987221 12 99975
Q ss_pred cc---ccccCC-hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 259 KW---ILHCWD-DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~---~lh~~~-~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-= .=..+. ..+..++++++.+.|+|||.|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 11 000111 23556899999999999999887654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.28 Score=40.82 Aligned_cols=69 Identities=14% Similarity=0.272 Sum_probs=53.5
Q ss_pred HHHHHHHHHhChhHHHHhCC-CCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccC--C---Ccceecchhch
Q 018366 35 PMATQAAIQLGVFEIIAKAG-KLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSS--G---ERLYGLTPVSK 107 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g-~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~---~~~y~~t~~~~ 107 (357)
..+|....+..|++.|...+ +.|+.+|++.+ ++ +..-+.|.|+.|+..|+|...... + ...|++++.+-
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 45677788899999998755 49999999999 66 777899999999999999975421 1 23577766543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.23 Score=47.43 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=64.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC--C-CC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD--S-VP- 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~-~p- 251 (357)
..+.+.+. ..+..+|+|+=||.|.++..+++... +++++++ ++.++.|++. .++.|..+|.++ + ..
T Consensus 283 ~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 283 ETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHh-hcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34444444 45667999999999999999996653 5666666 7777777652 568999999877 2 21
Q ss_pred -CC-CEEEeccccccCChhHHH-HHHHHHHHhCCCCCEEEE
Q 018366 252 -EG-DAILMKWILHCWDDDHCL-RILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 252 -~~-D~i~~~~~lh~~~~~~~~-~~L~~~~~~LkpgG~l~i 289 (357)
.. |+|+.-= |..-+. .+++.+.+ ++|...++|
T Consensus 360 ~~~~d~VvvDP-----PR~G~~~~~lk~l~~-~~p~~IvYV 394 (432)
T COG2265 360 GYKPDVVVVDP-----PRAGADREVLKQLAK-LKPKRIVYV 394 (432)
T ss_pred cCCCCEEEECC-----CCCCCCHHHHHHHHh-cCCCcEEEE
Confidence 12 8887622 222222 45555444 567677777
|
|
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.24 Score=40.32 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=40.1
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.-|+++|-..|.+|-++||..+|+ +..-++++|..|...|++...
T Consensus 17 v~Vl~aL~~~~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 17 GLVLFSLGIKGEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence 447888886679999999999999 899999999999999999753
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.36 Score=39.14 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=45.9
Q ss_pred HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 49 IIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 49 ~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
.....|++...+||+.+++ .+.-+...++-|...|++... .-+.+.+|+.+....
T Consensus 18 l~~~~~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~---~y~gi~LT~~G~~~a 72 (154)
T COG1321 18 LLEEKGFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYE---PYGGVTLTEKGREKA 72 (154)
T ss_pred HHhccCcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEe---cCCCeEEChhhHHHH
Confidence 3334469999999999999 889999999999999999975 357899998877444
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.2 Score=47.92 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=42.4
Q ss_pred cCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC
Q 018366 191 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD 248 (357)
Q Consensus 191 ~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 248 (357)
+++....++|+-||||.++..+++... +++++++ |+.++.|+.. .+.+|++|-.++
T Consensus 380 ~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 366778999999999999999998865 4555555 7777777653 568899994444
|
|
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.13 Score=37.66 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=45.8
Q ss_pred hHHHH--hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 47 FEIIA--KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 47 fd~L~--~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
||.|. ..|+..+--|.-.+++ +......+++.|+..|++.....+....|.+|+.+..|+.
T Consensus 21 ~dIL~~~~~~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 21 FDILKAISEGGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHhcCCCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHH
Confidence 44444 3457888889999999 9999999999999999666421111237999999998865
|
|
| >PRK13777 transcriptional regulator Hpr; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.44 Score=39.88 Aligned_cols=64 Identities=16% Similarity=0.005 Sum_probs=48.9
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++..|...++.|..+||+.+++ ++.-+.++++-|+..|+|.+...+++. ...+|+.+..+..
T Consensus 48 ~~iL~~L~~~~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 48 HHILWIAYHLKGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 457777777678999999999999 888899999999999999976433222 2556666665543
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.24 Score=48.28 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=56.8
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCCC
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKD 114 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~~ 114 (357)
..+..++..|...++.|..+||+.+++ ++..+.+.++.|.+.|+|....+ ....|.+|+.+..++....
T Consensus 6 ~~e~~vL~~L~~~~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~~-~~~~i~LTeeG~~~~~~g~ 74 (489)
T PRK04172 6 PNEKKVLKALKELKEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEER-VEEVYVLTEEGKKYAEEGL 74 (489)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEee-eEEEEEECHHHHHHHHhcC
Confidence 345667778877668999999999999 99999999999999999997532 2467999999997776544
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.15 Score=47.52 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=41.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNM 246 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~ 246 (357)
...+++.++ .++. +|||+=||.|.++..+++... ++++++. +++++.|+.. .+++|+.++.
T Consensus 186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 345555555 4443 899999999999999999864 5777776 7888777642 5788887764
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=91.39 E-value=4.6 Score=33.15 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=72.7
Q ss_pred EcCCcchHHHHHHhhCC---CCeEEEeec-hHHHHhCCC---------CCCceE-EEcCCCC--C-C--CCC--CEEEec
Q 018366 201 VGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDAPS---------YAGVEH-VGGNMFD--S-V--PEG--DAILMK 259 (357)
Q Consensus 201 iG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~v~~-~~~D~~~--~-~--p~~--D~i~~~ 259 (357)
||=|.=.++..|++.+. ++.++.+|. .++.+.-.. ..++.+ ...|..+ . . ... |.|+++
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 67777788999999887 444566775 333333221 133443 3335554 1 2 122 999887
Q ss_pred cccccCC----h-------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 260 WILHCWD----D-------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 260 ~~lh~~~----~-------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
.-..... . +-...+++.+...|+++|.+.|.-..-+ .++.=+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---------------------------py~~W~ 135 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---------------------------PYDSWN 135 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---------------------------CCcccc
Confidence 6543311 1 2235788889999999999998543211 112223
Q ss_pred HHHHHHHcCCceeEEeecC
Q 018366 329 FTELAIAAGFKHINFASCV 347 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~~ 347 (357)
+.++.+++||..++..+..
T Consensus 136 i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHhcCCEEEEEecCC
Confidence 4577788999999888765
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.11 E-value=1.6 Score=40.08 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=63.6
Q ss_pred CCCCceEEEEcCC-cchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcC---CCCCCCC-CCEEEeccccccC
Q 018366 192 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN---MFDSVPE-GDAILMKWILHCW 265 (357)
Q Consensus 192 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D---~~~~~p~-~D~i~~~~~lh~~ 265 (357)
..+..+|+=+|+| -|..+.++++..- .+++.+|. ++-.+.+++...-.++... ..+...+ .|+|+-.-.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~---- 238 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG---- 238 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence 4567788888877 4578888998765 89999998 6666667766555555543 2222222 377775443
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
...+....+.|++||+++++-..
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCC
Confidence 23467778899999999998875
|
|
| >COG1846 MarR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.46 Score=36.38 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=51.9
Q ss_pred HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 39 QAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 39 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.+..+..++..|...++.+..+||+.+++ ++..+.++++-|+..|+|.+.....++ .+.+|+.+..+..
T Consensus 20 lt~~q~~~L~~l~~~~~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~ 91 (126)
T COG1846 20 LTPPQYQVLLALYEAGGITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLE 91 (126)
T ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHH
Confidence 45566777778887655555999999999 899999999999999999986433222 4667777665554
|
|
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.62 Score=35.60 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=38.7
Q ss_pred HhChhHHHHhC-CCCCHHHHHHHhCcCC-CCCcchHHHHHHHHhcCcceeeec
Q 018366 43 QLGVFEIIAKA-GKLSAPEIAAQLQAQN-VKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 43 ~lglfd~L~~~-g~~t~~~la~~~~~~~-~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
+.-|++.|... ++.|++||.+.+.-+. ..+..-+.|.|+.|+..|++.+..
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 44577777764 3899999999984210 116778999999999999999764
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.65 Score=41.57 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=53.0
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCe-EEEeec-hHHHHhCCCC-----CCceEEEcCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-----AGVEHVGGNMF 247 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~ 247 (357)
...++++.+. ..+....+|.-=|.|..+..+++.+|... .+++|. |.+++.+++. +|+.++.++|.
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 3457777777 66778999999999999999999998765 899998 8888888762 57777776654
|
|
| >COG1378 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.53 Score=41.40 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=51.3
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+..|..+.-+|-..|+.|+.|||+..|+ +...+...|+.|...|++...+ ..+..|+.-+...
T Consensus 15 t~yEa~vY~aLl~~g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~-g~P~~y~av~p~~ 77 (247)
T COG1378 15 TEYEAKVYLALLCLGEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE-GRPKKYRAVPPEE 77 (247)
T ss_pred CHHHHHHHHHHHHhCCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC-CCCceEEeCCHHH
Confidence 4456667788888789999999999999 8889999999999999999753 3467887655444
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.4 Score=31.45 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=31.1
Q ss_pred CC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~-t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.. |..+||+.+++ .+..+++.++.|...|++...
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~ 53 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR 53 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 45 89999999999 899999999999999999864
|
|
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.64 Score=31.90 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=41.6
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
..++..|.+ ++.|..+||+.+++ ....+.+.++.|...|+.... . +..|.+.
T Consensus 3 ~~il~~L~~-~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~--~-~~g~~l~ 54 (69)
T TIGR00122 3 LRLLALLAD-NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT--V-GKGYRLP 54 (69)
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe--c-CCceEec
Confidence 456778887 48899999999999 899999999999999996653 2 3455543
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.6 Score=38.82 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=48.4
Q ss_pred HhChhHHHHh--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 43 QLGVFEIIAK--AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~--~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
+..++-.|.. .++.|..+||+.+++ ++..+.+.++-|+..|+|.+...++++ ...+|+.+..++.
T Consensus 57 q~~iL~~L~~~~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 57 LFMALITLESQENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 3446666653 237899999999999 899999999999999999986433222 3567777665554
|
|
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.78 Score=35.23 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=44.3
Q ss_pred HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 39 QAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 39 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
...+...|.+.+.+.|..|+.+++..+|+ +...+.++++.|++-|-|..+
T Consensus 10 r~eLk~rIvElVRe~GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~ 59 (127)
T PF06163_consen 10 REELKARIVELVREHGRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH 59 (127)
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence 34566778888888899999999999999 899999999999999999963
|
|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.8 Score=33.75 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=36.8
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
+.|..|||+.+|+ .+..+.|.|..|+..|+|... .+.+.+..+
T Consensus 47 ~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~--~~~~~~~~n 89 (95)
T TIGR01610 47 RVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQ--GMMGIVGVN 89 (95)
T ss_pred ccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeee--cCCceeecC
Confidence 8999999999999 899999999999999999964 234666654
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.44 Score=45.79 Aligned_cols=70 Identities=10% Similarity=0.097 Sum_probs=58.7
Q ss_pred HHHhChhHHHHhCCC-CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCCCC
Q 018366 41 AIQLGVFEIIAKAGK-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDG 115 (357)
Q Consensus 41 a~~lglfd~L~~~g~-~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~~~ 115 (357)
+.+..|+..|...++ .+.++||+.+|+ ++..+.+.+..|.+.|+++... .....|.+|+.+..++....+
T Consensus 3 ~~e~~iL~~l~~~~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 3 MAEEALLGALSNNEEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQD-IKRETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCH
Confidence 467778888887555 799999999999 8999999999999999999763 346789999999987776554
|
|
| >PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.59 Score=36.85 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=38.9
Q ss_pred hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 52 KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 52 ~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
..|+.|.+|||.++|+ ..+.+..-|-++++-|-|.++..++.=+|+++
T Consensus 3 q~Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~q~gkfRy~iP 50 (155)
T PF07789_consen 3 QEGAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVNQNGKFRYCIP 50 (155)
T ss_pred ccCcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEecCCCceEEeCC
Confidence 3479999999999999 88999999999999999998643333346553
|
The region in question is approximately 150 amino acid residues long. |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=89.28 E-value=2 Score=40.39 Aligned_cols=111 Identities=22% Similarity=0.378 Sum_probs=62.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcch----HHHHHHhhC---CCCeEEEeechH-----HHHhCCCC-------CC--ceE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGV----TLSMITSKY---PQIKAVNFDLPH-----VVQDAPSY-------AG--VEH 241 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~----~~~~l~~~~---p~~~~~~~D~~~-----~~~~a~~~-------~~--v~~ 241 (357)
+.|++.+.+ .+..+|+|+|.|.|. +...|+.+. |.+++|+++.|. .++.+.++ -+ ++|
T Consensus 100 qaIleA~~g-~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFEG-ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhcc-CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 467887773 466799999999994 455666653 677889998622 22222211 12 344
Q ss_pred EEc--CCCCCC-------CCCC--EEEeccccccCChh------HHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 242 VGG--NMFDSV-------PEGD--AILMKWILHCWDDD------HCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 242 ~~~--D~~~~~-------p~~D--~i~~~~~lh~~~~~------~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
... +-.+++ ..++ +|-+...||+..++ ....+|+.++ .|+|. .++++|.-.+.
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~-vvv~~E~ea~~ 248 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPK-VVVLVEQEADH 248 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCC-EEEEEeecCCC
Confidence 442 211111 1123 33456677888632 2345776665 67886 55555654433
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.62 Score=34.18 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=38.4
Q ss_pred HHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 58 APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 58 ~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
+.+||+.+++ ++..+.+.++.|+..|+|... .+..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~---~~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYE---PYRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEc---CCCceEechhHHHHH
Confidence 5689999999 899999999999999999974 235788888776544
|
iron dependent repressor |
| >COG1733 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=88.92 E-value=1.5 Score=33.83 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCcceeeeccCC--
Q 018366 20 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSSG-- 96 (357)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-- 96 (357)
-.++...+++.+-|..-+|+...+ |+.-..||-..++ + .+..|.+-|+.|+..|++.+.....
T Consensus 11 c~~~~~l~~ig~kW~~lIl~~L~~----------g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~~~P 76 (120)
T COG1733 11 CPVEEALEVIGGKWTLLILRDLFD----------GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYPEEP 76 (120)
T ss_pred CCHHHHHHHHcCccHHHHHHHHhc----------CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecCCCC
Confidence 347788888888888887776543 4788888888887 8 8889999999999999999754321
Q ss_pred -Ccceecchhchhhhc
Q 018366 97 -ERLYGLTPVSKYFVS 111 (357)
Q Consensus 97 -~~~y~~t~~~~~l~~ 111 (357)
.-.|++|+.+..+..
T Consensus 77 prveY~LT~~G~~L~~ 92 (120)
T COG1733 77 PRVEYRLTEKGRDLLP 92 (120)
T ss_pred ceeEEEEhhhHHHHHH
Confidence 345888888765553
|
|
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.2 Score=29.67 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 56 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 56 ~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.|..+||+.+++ ++..+++.+..|...|+++.
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVER 57 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 469999999999 89999999999999999985
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.65 Score=38.10 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
...+..|+..|.++|..|..+||+++|+ .+..+.+=++-|...|++..
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 4467889999999889999999999999 88999999999999999983
|
|
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.62 Score=30.23 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=32.4
Q ss_pred ChhHHH-HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCc
Q 018366 45 GVFEII-AKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHR 87 (357)
Q Consensus 45 glfd~L-~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g 87 (357)
.|+..| ...++.|+++||+.+++ .++-+.+-+..|...|
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGV----SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence 356667 44447999999999999 9999999999999999
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.85 Score=33.28 Aligned_cols=47 Identities=26% Similarity=0.264 Sum_probs=42.1
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..+.|+..|...||-.+.-||..+++ +...+...|+.|+.+|+|+++
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 45667788888789999999999999 999999999999999999975
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.23 E-value=3.3 Score=39.04 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcC----CCC---CC-CC-C-CEEEec
Q 018366 192 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN----MFD---SV-PE-G-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D----~~~---~~-p~-~-D~i~~~ 259 (357)
..+..+||.+|||. |..+..+++...-.+++.++. ++..+.+++...+.++... +.+ .. +. + |+|+-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45567899999987 889999999875435777765 6666666544223332211 111 11 11 3 777543
Q ss_pred c---------------ccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 260 W---------------ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 260 ~---------------~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
- +|+-. .+....++.+.+.|+|+|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLE--TDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccc--cCchHHHHHHHHHhccCCEEEEEcC
Confidence 1 11111 1224578889999999999998754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=0.79 Score=37.10 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=42.6
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
..+..|++.|.++|..|..+||+++|+ .+..+.+=++.|...|++..
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 356788999999889999999999999 89999999999999999983
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.53 Score=37.32 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=46.8
Q ss_pred eEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCCC-C-CEEEecccc-cc------CChhHHHHHHHHHHH
Q 018366 220 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVPE-G-DAILMKWIL-HC------WDDDHCLRILKNCYK 279 (357)
Q Consensus 220 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p~-~-D~i~~~~~l-h~------~~~~~~~~~L~~~~~ 279 (357)
++.++|+ ++.++..+++ .+|+++..+-.+ .++. . |+++++.-. -. -..+.....|+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 4678898 7777766542 578888775544 3455 3 887765432 11 012445689999999
Q ss_pred hCCCCCEEEEEeec
Q 018366 280 AIPDNGKVIVMNSI 293 (357)
Q Consensus 280 ~LkpgG~l~i~e~~ 293 (357)
.|+|||.+.|+-..
T Consensus 81 lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 81 LLKPGGIITIVVYP 94 (140)
T ss_dssp HEEEEEEEEEEE--
T ss_pred hhccCCEEEEEEeC
Confidence 99999999997653
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=88.07 E-value=0.86 Score=40.01 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=52.4
Q ss_pred CCceEEEEcCCcchHHHH---HHhhC--CCCeEEEeec----hHHHH---------------------------hCCCC-
Q 018366 194 NVERLVDVGGGFGVTLSM---ITSKY--PQIKAVNFDL----PHVVQ---------------------------DAPSY- 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~---l~~~~--p~~~~~~~D~----~~~~~---------------------------~a~~~- 236 (357)
-+..|+|+||-.|..+.. +++.+ ++-++.++|. |+.-. .....
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 346899999998875543 34433 3446777774 22211 01110
Q ss_pred ---CCceEEEcCCCCCCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 237 ---AGVEHVGGNMFDSVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 237 ---~~v~~~~~D~~~~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+++.++.|.|.+.+|.. +-|-+.++=.++- +.....|..++..|.|||.|++-|
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY-esT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY-ESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH-HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccch-HHHHHHHHHHHhhcCCCeEEEEeC
Confidence 46889999987745532 2222222111222 456799999999999999999944
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.84 E-value=2.8 Score=36.34 Aligned_cols=96 Identities=13% Similarity=0.182 Sum_probs=65.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-----hHHHHhCCCCCCceEEEcCCCCCCCC----C--CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFDSVPE----G--DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~p~----~--D~i~~~ 259 (357)
.++..+||-+|+++|....++.... |+--+..++. ...+..|+++++|--+.-|...|.-- + |+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 4677899999999999988887754 4444444443 35778888888888888888775431 2 76654
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.+-+ | ++..-+-=++.--||+||.++|.=
T Consensus 233 Dvaq--p-dq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 233 DVAQ--P-DQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred cCCC--c-hhhhhhhhhhhhhhccCCeEEEEE
Confidence 2221 2 233444446677899999888743
|
|
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=0.91 Score=43.85 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=58.0
Q ss_pred HHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCCCC
Q 018366 41 AIQLGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDG 115 (357)
Q Consensus 41 a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~~~ 115 (357)
..+..|+..|.+ .+..+.++||+.+|+ ++..+.+.+..|.+.|+++... .....|.+|+.+..++....|
T Consensus 6 ~~e~~iL~~l~~~~~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 6 LEENTILSKLESENEIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEM-KKSNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCH
Confidence 456667788886 347899999999999 8999999999999999999764 346789999999987776554
|
|
| >PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress | Back alignment and domain information |
|---|
Probab=87.31 E-value=1.5 Score=30.77 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=39.2
Q ss_pred HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 51 AKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 51 ~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
..+.|+...+||+.+++ ++.-++.-+..|.++|+|+..+.. .+.|.-|..+.
T Consensus 19 ~~~~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p~~-s~GriPT~~aY 70 (78)
T PF03444_consen 19 ETGEPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQPHP-SGGRIPTDKAY 70 (78)
T ss_pred hcCCCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCCCC-CCCCCcCHHHH
Confidence 33349999999999999 888999999999999999853211 34555454443
|
Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent |
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=87.14 E-value=1.1 Score=43.21 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=49.5
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhC--cCCCCCcchHHHHHHHHhcCcceeeeccC-CCcceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQ--AQNVKAPMMLDRMLRLLVSHRVLECSVSS-GERLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~y~~t~~~~~l~ 110 (357)
.++-|+..|.+ ++.+..||++.++ + .+..+.+.|+.|...|+|+...+. ....|++|+.+..++
T Consensus 372 ~r~~IL~~L~~-~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 372 TKLEILKILSE-REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRLL 438 (442)
T ss_pred hHHHHHHHHhh-CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHHH
Confidence 35557888887 4899999999998 6 788999999999999999853112 233588888776544
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=86.84 E-value=0.96 Score=40.79 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=39.4
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC--------CCCceEEEc----CCCCCC--C-CC-CEEE
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGG----NMFDSV--P-EG-DAIL 257 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~----D~~~~~--p-~~-D~i~ 257 (357)
..++||||+|...+=--|..+..++++++.|+ +..++.|++ ..+|+++.. +++..+ + +. |+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 56899999998865433444445899999998 777777764 256777654 344422 1 22 9999
Q ss_pred eccccccCCh
Q 018366 258 MKWILHCWDD 267 (357)
Q Consensus 258 ~~~~lh~~~~ 267 (357)
|+=-+|.-.+
T Consensus 183 CNPPFy~s~~ 192 (299)
T PF05971_consen 183 CNPPFYSSQE 192 (299)
T ss_dssp E-----SS--
T ss_pred cCCccccChh
Confidence 9998887543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG2512 Predicted membrane-associated trancriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.82 E-value=0.95 Score=39.98 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=41.1
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 43 QLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 43 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
+..+.+.|.+.| ..+-+||.+++|+ ++.-+.|.|+-|+.+|++++..
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~K 244 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKEK 244 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEEE
Confidence 445778887766 5999999999999 8899999999999999999864
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.59 E-value=2.1 Score=37.54 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=64.3
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC--CC-CEEEeccccccCChhH
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP--EG-DAILMKWILHCWDDDH 269 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p--~~-D~i~~~~~lh~~~~~~ 269 (357)
.+...-+|+|...|.++-.|.++ +..++.+|...|.+.....++|+....|-+.-.| .. |-.+|-.| +.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------Ek 281 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------EK 281 (358)
T ss_pred cCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------cC
Confidence 46789999999999999999987 6889999987777777777889999999888544 33 77777554 44
Q ss_pred HHHHHHHHHHhCCCC
Q 018366 270 CLRILKNCYKAIPDN 284 (357)
Q Consensus 270 ~~~~L~~~~~~Lkpg 284 (357)
..++=..+...|..|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 445555666676654
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.52 E-value=2.4 Score=43.21 Aligned_cols=96 Identities=11% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhC-------C-----CCeEEEeec-h---HHHHhCC----------------------C
Q 018366 194 NVERLVDVGGGFGVTLSMITSKY-------P-----QIKAVNFDL-P---HVVQDAP----------------------S 235 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~----------------------~ 235 (357)
..-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 44799999999998766655433 3 356777774 2 1111110 0
Q ss_pred -------CCC--ceEEEcCCCCC---CCC-CCEEEecccccc-CChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 236 -------YAG--VEHVGGNMFDS---VPE-GDAILMKWILHC-WDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 236 -------~~~--v~~~~~D~~~~---~p~-~D~i~~~~~lh~-~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
..+ +++..+|+.+- +.. .|++++-..=-. -|+=...++|+++++.++|||++.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 012 33555776652 222 287775332111 1111235889999999999988875
|
|
| >COG1522 Lrp Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=86.36 E-value=1.1 Score=36.01 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=42.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
..+..|+..|.++++.+..+||+++|+ .+..+.+-++-|...|++..
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~ 54 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKG 54 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceee
Confidence 456778899999889999999999999 89999999999999999995
|
|
| >PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks | Back alignment and domain information |
|---|
Probab=86.00 E-value=1.1 Score=31.41 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=40.4
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..+++.+.+.. +.+..+|+..++. +++.+...++.|...|++.+.
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence 4556677777754 8999999999999 999999999999999999964
|
This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms. |
| >PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors | Back alignment and domain information |
|---|
Probab=85.69 E-value=0.6 Score=35.12 Aligned_cols=43 Identities=16% Similarity=0.392 Sum_probs=33.5
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
|++.|...|.++-++||..+++ ++.-++++|..|...|++...
T Consensus 18 Il~~L~~~~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 18 ILDALLRKGELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp HHHHHHHH--B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEEE
Confidence 6788886678999999999999 899999999999999999864
|
Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.35 E-value=9.1 Score=34.00 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=44.4
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcC
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSN 112 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~ 112 (357)
|+.+|-.+ -+.-.|++...+ +-..+..+++.|...|++... .+...+|..+..++..
T Consensus 27 vl~ail~~--~d~wkIvd~s~~----plp~v~~i~~~l~~egiv~~~----~g~v~~TekG~E~~e~ 83 (354)
T COG1568 27 VLSAILAT--NDFWKIVDYSDL----PLPLVASILEILEDEGIVKIE----EGGVELTEKGEELAEE 83 (354)
T ss_pred HHHHHHcC--cchHhhhhhccC----CchHHHHHHHHHHhcCcEEEe----cCcEeehhhhHHHHHH
Confidence 44555553 388888888888 788999999999999999963 3448889888877764
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=84.62 E-value=4.3 Score=35.23 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred ceEEEcCCCC---CCCCC--CEEEec-------------cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCC
Q 018366 239 VEHVGGNMFD---SVPEG--DAILMK-------------WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEV 300 (357)
Q Consensus 239 v~~~~~D~~~---~~p~~--D~i~~~-------------~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~ 300 (357)
+++..+|..+ .+|+. |+|+.. ..-.....+-...++++++++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i----------- 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS----------- 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE-----------
Q ss_pred CchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 301 SSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
-........+...++++||......
T Consensus 71 -------------------f~~~~~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 71 -------------------FYGWNRVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred -------------------EeccccHHHHHHHHHHCCCEEeeEE
|
|
| >PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term | Back alignment and domain information |
|---|
Probab=84.42 E-value=1.4 Score=33.71 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=33.6
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 94 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 94 (357)
++|++|||+.+.+ .++.++.+|+-|...|.|+..+.
T Consensus 19 ~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~pg 54 (115)
T PF12793_consen 19 EVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQPG 54 (115)
T ss_pred ceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeeeCC
Confidence 7899999999999 89999999999999999999643
|
|
| >PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
Probab=84.30 E-value=1.3 Score=29.70 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=35.5
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.|++.|-+.|+.|+.+|.+.+++ ++..++.-|-.|...+++..
T Consensus 17 ~V~~~Ll~~G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y 59 (62)
T PF08221_consen 17 KVGEVLLSRGRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQY 59 (62)
T ss_dssp HHHHHHHHC-SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeee
Confidence 36677777779999999999999 89999999999999999985
|
7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A. |
| >PRK13509 transcriptional repressor UlaR; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=1.6 Score=38.61 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=40.9
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
...|.+.|.+.|..++.|||+.+++ .+.-++|-|+.|...|++.+.
T Consensus 7 ~~~Il~~l~~~~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~ 52 (251)
T PRK13509 7 HQILLELLAQLGFVTVEKVIERLGI----SPATARRDINKLDESGKLKKV 52 (251)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3447888888789999999999999 899999999999999999863
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=83.86 E-value=1.7 Score=38.50 Aligned_cols=77 Identities=10% Similarity=0.195 Sum_probs=48.2
Q ss_pred HHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCE
Q 018366 208 TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGK 286 (357)
Q Consensus 208 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~ 286 (357)
++.+|.+..++.+++++|. +..++.+.+.+-+.-...+ .+.+.+.|+|++.- |.....++|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCcE
Confidence 4678888889999999998 6677766543333322222 11233448888754 446677888888888888876
Q ss_pred EEEE
Q 018366 287 VIVM 290 (357)
Q Consensus 287 l~i~ 290 (357)
+.=+
T Consensus 75 v~Dv 78 (258)
T PF02153_consen 75 VTDV 78 (258)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 6544
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.58 E-value=6.2 Score=35.91 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=50.4
Q ss_pred CceEEEEcCCc-c-hHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHH
Q 018366 195 VERLVDVGGGF-G-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCL 271 (357)
Q Consensus 195 ~~~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~ 271 (357)
..+|.=||+|. | .++..+.+......++++|. ++..+.+++..-......+..+.....|+|++.- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 35788899885 3 34455554433246788887 5555544432211111112111223348887754 334456
Q ss_pred HHHHHHHHhCCCCCEEEEE
Q 018366 272 RILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 272 ~~L~~~~~~LkpgG~l~i~ 290 (357)
.+++.+...++||..++.+
T Consensus 81 ~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred HHHHHHHhhCCCCCEEEeC
Confidence 7788888888988765543
|
|
| >TIGR00498 lexA SOS regulatory protein LexA | Back alignment and domain information |
|---|
Probab=83.39 E-value=2.1 Score=36.24 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=31.0
Q ss_pred CCCHHHHHHHhCcCCCCC-cchHHHHHHHHhcCcceee
Q 018366 55 KLSAPEIAAQLQAQNVKA-PMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~-~~~l~~~L~~L~~~g~l~~ 91 (357)
+.|..|||+.+|+ . +.-+.+.|+.|...|++..
T Consensus 25 ~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~ 58 (199)
T TIGR00498 25 PPSIREIARAVGL----RSPSAAEEHLKALERKGYIER 58 (199)
T ss_pred CCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEec
Confidence 6899999999999 7 8899999999999999996
|
LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA. |
| >PF14394 DUF4423: Domain of unknown function (DUF4423) | Back alignment and domain information |
|---|
Probab=83.08 E-value=2.5 Score=34.94 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=38.5
Q ss_pred CCHHHHHHHh--CcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 56 LSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 56 ~t~~~la~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
.++.+||+++ ++ ...-++.-|+.|+.+|++.+ +++|.|..|..+
T Consensus 40 ~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k---~~~g~y~~t~~~ 85 (171)
T PF14394_consen 40 PDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKK---DGDGKYVQTDKS 85 (171)
T ss_pred CCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEE---CCCCcEEEecce
Confidence 3999999999 88 88999999999999999996 446799887755
|
|
| >PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4 | Back alignment and domain information |
|---|
Probab=83.07 E-value=1.4 Score=30.83 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=23.2
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHH
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLL 83 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L 83 (357)
++..|.++.|+|+++||.++|+ +.+.+...|..+
T Consensus 29 LLr~LA~G~PVt~~~LA~a~g~----~~e~v~~~L~~~ 62 (77)
T PF12324_consen 29 LLRLLAKGQPVTVEQLAAALGW----PVEEVRAALAAM 62 (77)
T ss_dssp HHHHHTTTS-B-HHHHHHHHT------HHHHHHHHHH-
T ss_pred HHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHhC
Confidence 7788998669999999999999 666666655544
|
99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A. |
| >COG1497 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.01 E-value=2.3 Score=36.67 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCCCCCchhhhhhcc-CChhhHH
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALP-LDKVFME 132 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 132 (357)
+.....|||+++|+ .+..++..++-|+..|++..+ +.+.|..|..+..++...- ..++.+.... ..-.+..
T Consensus 24 p~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~~---gR~~Y~iTkkG~e~l~~~~-~dlr~f~~ev~~~l~~~~ 95 (260)
T COG1497 24 PRVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEKE---GRGEYEITKKGAEWLLEQL-SDLRRFSEEVELVLDYVM 95 (260)
T ss_pred CCCCHHHHHHHcCC----CHHHHHHHHHHHHhccceeec---CCeeEEEehhHHHHHHHHH-HHHHHHHHHHHHHHhhHH
Confidence 47899999999999 889999999999999999963 4579999999886554321 1244333322 1112344
Q ss_pred HhhhhHH-HHhcCCCc
Q 018366 133 SWLGLRD-AVMEGGIP 147 (357)
Q Consensus 133 ~~~~l~~-~l~~g~~~ 147 (357)
.|..+++ -++.|.+-
T Consensus 96 vw~AIA~edI~~Gd~V 111 (260)
T COG1497 96 VWTAIAKEDIKEGDTV 111 (260)
T ss_pred HHHHhhHhhhccCCEE
Confidence 5666554 35555543
|
|
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=83.00 E-value=1.4 Score=28.46 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=27.9
Q ss_pred CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcce
Q 018366 56 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 89 (357)
Q Consensus 56 ~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l 89 (357)
.|.+.||+.+|+ .++-+.+.++.|+..|++
T Consensus 26 pS~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 389999999999 899999999999999986
|
|
| >PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B | Back alignment and domain information |
|---|
Probab=82.86 E-value=2.4 Score=25.91 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=25.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHH
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLR 81 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~ 81 (357)
++..|+..|.+.+..+..+||+.+|+ .+..+.+=++
T Consensus 4 ~D~~Il~~Lq~d~r~s~~~la~~lgl----S~~~v~~Ri~ 39 (42)
T PF13404_consen 4 LDRKILRLLQEDGRRSYAELAEELGL----SESTVRRRIR 39 (42)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHTS-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHCc----CHHHHHHHHH
Confidence 45678888998889999999999999 6665554443
|
... |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=82.77 E-value=7.7 Score=33.15 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=62.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCC--eEEEeec-hHHHHhCCCC------------------------
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI--KAVNFDL-PHVVQDAPSY------------------------ 236 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~~------------------------ 236 (357)
..+..++ -+++.++-|-.||.|.++.-+.-.+++. .+++-|+ +++++.|+++
T Consensus 42 R~l~~l~-~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~ 120 (246)
T PF11599_consen 42 RALHYLE-GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG 120 (246)
T ss_dssp HHHCTSS-S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhhc-CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC
Confidence 3444454 3567899999999999887776665543 2455566 7777776541
Q ss_pred ------------------------CCceEEEcCCCCCC-------CCC-CEEEec---cccccCC----hhHHHHHHHHH
Q 018366 237 ------------------------AGVEHVGGNMFDSV-------PEG-DAILMK---WILHCWD----DDHCLRILKNC 277 (357)
Q Consensus 237 ------------------------~~v~~~~~D~~~~~-------p~~-D~i~~~---~~lh~~~----~~~~~~~L~~~ 277 (357)
.-..+...|++++. +.+ |+|+.- .-+-+|. .+-..++|..+
T Consensus 121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l 200 (246)
T PF11599_consen 121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSL 200 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHH
Confidence 01457788988832 223 888642 1233443 34467999999
Q ss_pred HHhCCCCCEEEEEe
Q 018366 278 YKAIPDNGKVIVMN 291 (357)
Q Consensus 278 ~~~LkpgG~l~i~e 291 (357)
+.+|.+++.+++++
T Consensus 201 ~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 201 APVLPERSVVAVSD 214 (246)
T ss_dssp HCCS-TT-EEEEEE
T ss_pred HhhCCCCcEEEEec
Confidence 99996566666644
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.70 E-value=2.3 Score=39.20 Aligned_cols=65 Identities=15% Similarity=0.297 Sum_probs=39.5
Q ss_pred cCcchHHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC----C----CCeEEEeec-hHHHH
Q 018366 162 GNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----P----QIKAVNFDL-PHVVQ 231 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~----p----~~~~~~~D~-~~~~~ 231 (357)
.-|+..+.|....... .. +....+. .+.+..+++||+|+|.++..+++.. | .+++..++. |+..+
T Consensus 50 TApels~lFGella~~---~~-~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 50 TAPELSQLFGELLAEQ---FL-QLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred echhHHHHHHHHHHHH---HH-HHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 3456666666533221 11 2223333 3456789999999999988877653 4 456777776 44443
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.61 E-value=1.6 Score=41.02 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=52.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC--CCCC--CCEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD--SVPE--GDAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~~p~--~D~i~~~~~ 261 (357)
+...|||||.|||.++...++...+ .++.++. .+|.+.+++ .++|+++.---.+ ..|. +|+++-..+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4568999999999999988888755 5778876 777777764 1456655432222 1222 255544333
Q ss_pred cccCChhHHHHHHHHHHHhC-CCC
Q 018366 262 LHCWDDDHCLRILKNCYKAI-PDN 284 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~L-kpg 284 (357)
.--+-.+-+..-++.+.+.| +||
T Consensus 145 dtEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhhhccccchhHHHHHHHhcccC
Confidence 22222232334455665544 455
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.60 E-value=7.2 Score=35.00 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=56.8
Q ss_pred ceEEEEcCC--cchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEE-cCC-CCCCCCCCEEEeccccccCChhHH
Q 018366 196 ERLVDVGGG--FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVG-GNM-FDSVPEGDAILMKWILHCWDDDHC 270 (357)
Q Consensus 196 ~~vLDiG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-~D~-~~~~p~~D~i~~~~~lh~~~~~~~ 270 (357)
.+|+=+|.| -|.++..+.+..+...+++.|. ....+.+.+.+ +.... .+. .......|+|+++- |-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-v~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-VIDELTVAGLAEAAAEADLVIVAV-----PIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-cccccccchhhhhcccCCEEEEec-----cHHHH
Confidence 467778877 4678888888888888899987 44444444321 22211 122 12333459988754 44667
Q ss_pred HHHHHHHHHhCCCCCEEEE
Q 018366 271 LRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 271 ~~~L~~~~~~LkpgG~l~i 289 (357)
.++++++...|+||..+.=
T Consensus 78 ~~~l~~l~~~l~~g~iv~D 96 (279)
T COG0287 78 EEVLKELAPHLKKGAIVTD 96 (279)
T ss_pred HHHHHHhcccCCCCCEEEe
Confidence 8999999999999765543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=82.52 E-value=2.4 Score=38.21 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=65.1
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC----C--CCceEEEcCCCCC----CCC-CCEEEe
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS----Y--AGVEHVGGNMFDS----VPE-GDAILM 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~~----~p~-~D~i~~ 258 (357)
..+..+|||..++.|.=+..+++... ...++..|+ +.-+...+. . ..+.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45667899999999999999999887 456788887 443333322 1 3456665565432 112 266653
Q ss_pred ----c--cccccCCh-------hH-------HHHHHHHHHHhC----CCCCEEEEEeecc
Q 018366 259 ----K--WILHCWDD-------DH-------CLRILKNCYKAI----PDNGKVIVMNSIV 294 (357)
Q Consensus 259 ----~--~~lh~~~~-------~~-------~~~~L~~~~~~L----kpgG~l~i~e~~~ 294 (357)
+ .++..-++ ++ -.++|+++.+.+ ||||+++-..-.+
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 1 12222111 11 147899999999 9999999766543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG0640 ArsR Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=82.24 E-value=3.8 Score=29.77 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=44.1
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
++....+..++..|.+..+.++.+|+..+++ ....+.+.|..|...|++....
T Consensus 21 ~l~~~~r~~il~~l~~~~~~~~~~l~~~~~~----~~~~v~~hL~~L~~~glv~~~~ 73 (110)
T COG0640 21 ALADPTRLEILSLLAEGGELTVGELAEALGL----SQSTVSHHLKVLREAGLVELRR 73 (110)
T ss_pred HhCCHHHHHHHHHHHhcCCccHHHHHHHHCC----ChhHHHHHHHHHHHCCCeEEEe
Confidence 4444567778888877337899999999999 8999999999999999999853
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.89 E-value=2 Score=36.42 Aligned_cols=43 Identities=33% Similarity=0.427 Sum_probs=35.5
Q ss_pred hhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
|.+.|... .+.|++|+|+++|+ ..--.+|.|.+|++.|++..+
T Consensus 163 i~~~~~~~~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 163 VREALKEPDQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHHhCcCCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 44455522 28999999999999 888999999999999999964
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=81.79 E-value=11 Score=37.00 Aligned_cols=94 Identities=13% Similarity=0.218 Sum_probs=59.8
Q ss_pred CCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC--------------C--------
Q 018366 194 NVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD--------------S-------- 249 (357)
Q Consensus 194 ~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~--------------~-------- 249 (357)
++.+|+=+|||. |..+...++.. +..++++|. ++..+.+++.+ .++...|..+ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslG-A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMG-AEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC-CeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 578999999996 55666677665 457899998 77777776542 2322211110 1
Q ss_pred ----CCCCCEEEeccccccCChhHHHHH-HHHHHHhCCCCCEEEEEee
Q 018366 250 ----VPEGDAILMKWILHCWDDDHCLRI-LKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 250 ----~p~~D~i~~~~~lh~~~~~~~~~~-L~~~~~~LkpgG~l~i~e~ 292 (357)
....|+++..-.... .....+ .+...+.+||||+++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 012398887654322 212344 5999999999999887654
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=81.60 E-value=4.5 Score=31.39 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=46.0
Q ss_pred CCceEEEEcCCcch-HHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC---CC-CEEEeccccccCChh
Q 018366 194 NVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP---EG-DAILMKWILHCWDDD 268 (357)
Q Consensus 194 ~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p---~~-D~i~~~~~lh~~~~~ 268 (357)
+..+|++||-|.=. .+..|.+.. ..++..|+.+. .+. .++.++.-|+++|-. .+ |+|++.+ ++.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~--~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR--KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIR-----PPP 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc--ccc--cCcceeeecccCCCHHHhcCCcEEEEeC-----CCh
Confidence 34599999998764 555555553 67888887332 222 678999999999543 23 9998876 345
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+...-+.++.+.. |.-++|....
T Consensus 82 El~~~il~lA~~v--~adlii~pL~ 104 (127)
T PF03686_consen 82 ELQPPILELAKKV--GADLIIRPLG 104 (127)
T ss_dssp TSHHHHHHHHHHH--T-EEEEE-BT
T ss_pred HHhHHHHHHHHHh--CCCEEEECCC
Confidence 5555666666643 5667775543
|
; PDB: 2K4M_A. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=81.55 E-value=21 Score=27.18 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=55.1
Q ss_pred CCceEEEEcCCcch-HHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC---CC-CEEEeccccccCChh
Q 018366 194 NVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP---EG-DAILMKWILHCWDDD 268 (357)
Q Consensus 194 ~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p---~~-D~i~~~~~lh~~~~~ 268 (357)
...+|+++|-|.=. .+..|++.. ..++..|+.+- .++ ..++++..|+++|.- .+ |+|++.. +++
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g--~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERG--FDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcC--CcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 45699999998664 445555543 66777786333 333 578999999998532 23 8888755 446
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+....+=++.++. |..++|.-.
T Consensus 82 El~~~ildva~aV--ga~l~I~pL 103 (129)
T COG1255 82 ELQSAILDVAKAV--GAPLYIKPL 103 (129)
T ss_pred HHHHHHHHHHHhh--CCCEEEEec
Confidence 6666666666655 345555433
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=81.44 E-value=4.3 Score=35.95 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-----CCCeEEEeec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL 226 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~ 226 (357)
+.+...++|+|||.|.++..+.... +...++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 4567799999999999999999988 5668899997
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK09775 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=81.30 E-value=2.2 Score=40.98 Aligned_cols=53 Identities=26% Similarity=0.306 Sum_probs=41.4
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
|...|.+ ||.|+.||++.+++ .+..+++.|..| .|+|...++.....|++...
T Consensus 5 ~~~~L~~-g~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~~~gr~~~Y~l~~~ 57 (442)
T PRK09775 5 LTTLLLQ-GPLSAAELAARLGV----SQATLSRLLAAL--GDQVVRFGKARATRYALLRP 57 (442)
T ss_pred HHHHHhc-CCCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEeccCceEEEEeccc
Confidence 4566776 69999999999999 899999999999 88888654333445766544
|
|
| >PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.22 E-value=2.6 Score=40.21 Aligned_cols=42 Identities=19% Similarity=0.075 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
.|.|.++|++++++ +++.++++|+.|...|++.+ .+++.|..
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~---~~~g~~~l 350 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRR---GERGQWVL 350 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEe---cCCCceEe
Confidence 48999999999999 99999999999999999985 33455654
|
|
| >PRK10906 DNA-binding transcriptional repressor GlpR; Provisional | Back alignment and domain information |
|---|
Probab=81.09 E-value=1.9 Score=38.06 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=41.5
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+.-|.+.|.+.+..++.|||+.+++ .+.-++|-|..|...|++.+.
T Consensus 6 R~~~Il~~l~~~~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r~ 52 (252)
T PRK10906 6 RHDAIIELVKQQGYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILRH 52 (252)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 34457888888778999999999999 899999999999999999863
|
|
| >PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C | Back alignment and domain information |
|---|
Probab=81.03 E-value=1.6 Score=27.55 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=23.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV 88 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~ 88 (357)
.+..+...+.+ +.|..+||+.+|+ ++.-+.+|++.....|+
T Consensus 6 ~R~~ii~l~~~--G~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 6 RRAQIIRLLRE--GWSIREIAKRLGV----SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ----HHHHHHH--T--HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred HHHHHHHHHHC--CCCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence 34556666676 6899999999999 99999999987665553
|
|
| >PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=80.92 E-value=2.4 Score=28.44 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=29.8
Q ss_pred CC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~-t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.. |..+||+.+++ ...-+++-|+.|.+.|++...
T Consensus 23 ~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 23 RLPSERELAERYGV----SRTTVREALRRLEAEGLIERR 57 (64)
T ss_dssp BE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred EeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence 55 99999999999 899999999999999999975
|
The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A .... |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.74 E-value=3.8 Score=35.93 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHhhcccCCCCc--eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHH
Q 018366 184 RILEHYEGFQNVE--RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ 231 (357)
Q Consensus 184 ~i~~~l~~~~~~~--~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 231 (357)
.+++.+. +++.. +|||+=+|.|.-+..++.. +.+++.++. |.+..
T Consensus 77 ~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaa 124 (250)
T PRK10742 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAA 124 (250)
T ss_pred HHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 4666665 55555 8999999999999999988 556888887 44433
|
|
| >PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A | Back alignment and domain information |
|---|
Probab=80.62 E-value=2.5 Score=29.27 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=40.0
Q ss_pred HHHHHHHHhChhH-----HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 36 MATQAAIQLGVFE-----IIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 36 ~~l~~a~~lglfd-----~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.++..+-+.|..+ .+.- +.|.++||..+|+ .+..+.+.|+.|...|++..
T Consensus 6 ~Ll~l~~~~~~~~~~~~~~~~~--~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~ 60 (76)
T PF13545_consen 6 FLLELAERFGRRQDGDGIRIPL--PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEV 60 (76)
T ss_dssp HHHHHHHHHEEEEETTEEEEEE--ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHCCCCCCCCceEEe--cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 3556666666641 1222 7999999999999 89999999999999999996
|
... |
| >COG3413 Predicted DNA binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.58 E-value=1.9 Score=37.08 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHH
Q 018366 34 LPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRL 82 (357)
Q Consensus 34 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~ 82 (357)
.-.+|..|++.|-||.=. .+|+.|||+.+|+ .+.-+...||.
T Consensus 160 Q~~vL~~A~~~GYFd~PR---~~~l~dLA~~lGI----Skst~~ehLRr 201 (215)
T COG3413 160 QLEVLRLAYKMGYFDYPR---RVSLKDLAKELGI----SKSTLSEHLRR 201 (215)
T ss_pred HHHHHHHHHHcCCCCCCc---cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 446999999999999933 5899999999999 66666666664
|
|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Probab=80.56 E-value=3.4 Score=34.14 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=31.5
Q ss_pred CEEEeccccccCCh----------hHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 254 DAILMKWILHCWDD----------DHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 254 D~i~~~~~lh~~~~----------~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+|+++++||+++. ++..+++.+++++|+|+..++-....
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~ 101 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAM 101 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCC
Confidence 99999999999864 56678888888888888666655443
|
SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 357 | ||||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 1e-108 | ||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-107 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 2e-92 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 6e-72 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 8e-62 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 2e-36 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 3e-33 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 4e-33 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 9e-28 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 1e-27 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 2e-27 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 2e-17 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 5e-17 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 3e-16 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 4e-14 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 7e-13 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 4e-11 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 2e-09 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 7e-09 | ||
| 3i53_A | 332 | Crystal Structure Of An O-Methyltransferase (Ncsb1) | 4e-06 | ||
| 3dp7_A | 363 | Crystal Structure Of Sam-Dependent Methyltransferas | 3e-05 |
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
| >pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332 | Back alignment and structure |
|
| >pdb|3DP7|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase From Bacteroides Vulgatus Atcc 8482 Length = 363 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 429 bits (1105), Expect = e-151
Identities = 184/366 (50%), Positives = 250/366 (68%), Gaps = 9/366 (2%)
Query: 1 MRSLSEIQLPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK----L 56
M S ++ +EE+ AMQLA VLPMA +AAI+L V EI+AK+ +
Sbjct: 1 MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYI 60
Query: 57 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV-----SSGERLYGLTPVSKYFVS 111
S EIAAQL N +AP+MLDR+LRLL S+ V+ ++ ERLYGL PV K+
Sbjct: 61 SPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTK 120
Query: 112 NKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYH 171
N+DGVSL F+ L DKV +E W L+DA++EGGIPFN+ +GM+IF+Y + N+ ++
Sbjct: 121 NEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFN 180
Query: 172 KAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ 231
K M ++STI M++ILE Y GF+ + +VDVGGG G SMI +KYP I A+NFDLPHV+Q
Sbjct: 181 KGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240
Query: 232 DAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291
DAP+++GVEH+GG+MFD VP+GDAI +KWI H W D+HCL++LKNCY A+PD+GKVIV
Sbjct: 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE 300
Query: 292 SIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLY 351
I+P P+ S + + D L++ + GG+ERT+KEF LA+A+GF+ ASC N Y
Sbjct: 301 YILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTY 360
Query: 352 IMEFFK 357
+MEF K
Sbjct: 361 VMEFLK 366
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 417 bits (1074), Expect = e-146
Identities = 163/349 (46%), Positives = 226/349 (64%), Gaps = 8/349 (2%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK--LSAPEIAAQLQAQ-NVKAP 73
+E++ A+QLA VLPM + AI+LG+ EI+ AG L+ E+AA+L + N +AP
Sbjct: 16 ADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAP 75
Query: 74 MMLDRMLRLLVSHRVLECSVSSG-----ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDK 128
M+DR+LRLL S+ V+ C V G R YG PV K+ N+DGVS+ + DK
Sbjct: 76 DMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDK 135
Query: 129 VFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEH 188
V MESW L+DAV++GGIPFN+ +GM FEY +P FN +++ M NHS I +++LE
Sbjct: 136 VLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEL 195
Query: 189 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD 248
Y GF+ + LVDVGGG G T++ I + YP IK VNFDLPHV+ +AP + GV HVGG+MF
Sbjct: 196 YHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK 255
Query: 249 SVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS 308
VP GD ILMKWILH W D HC +LKNCY A+P +GKV+++ I+P PE + S++
Sbjct: 256 EVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVF 315
Query: 309 LLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
+D++++ + GGRER ++EF LA AGF + N + +EF K
Sbjct: 316 HVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 406 bits (1044), Expect = e-142
Identities = 144/354 (40%), Positives = 210/354 (59%), Gaps = 14/354 (3%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK----LSAPEIAAQLQA--QNV 70
E+ + AM L +V P AAI L +FEIIAKA +S EIA++L A Q+
Sbjct: 20 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHS 79
Query: 71 KAPMMLDRMLRLLVSHRVLECSVSS-----GERLYGLTPVSKYFVSNKDGVSLGHFMALP 125
P LDRMLRLL S+ VL + + ER+YGL+ V KY V ++ L F
Sbjct: 80 DLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFL 139
Query: 126 LDKVFMESWLGLRDAVMEGGI-PFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMER 184
++ W+ ++AV++ I F VHG+ +E+ + N+ ++K+M + M+R
Sbjct: 140 CYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKR 199
Query: 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGG 244
+LE Y GF+ + LVDVGGG G L +I SKYP IK +NFDLP V+++AP +G+EHVGG
Sbjct: 200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGG 259
Query: 245 NMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSA 304
+MF SVP+GDA+++K + H W D+ C+ L NC+KA+ NGKVI++ I+PE P S +
Sbjct: 260 DMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEES 319
Query: 305 RETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLY-IMEFFK 357
+ S LD L+ GGRERT+K++ +L+ +GF A N +MEF+K
Sbjct: 320 KLVSTLDNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 385 bits (991), Expect = e-134
Identities = 96/345 (27%), Positives = 175/345 (50%), Gaps = 10/345 (2%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK-LSAPEIAAQLQAQNVKAPMM 75
E ++ + + + M+ + A+++ + II GK +S + + LQ + K
Sbjct: 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN- 70
Query: 76 LDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWL 135
+ R++R L + E ++ E Y LT S+ V D L + LD S+
Sbjct: 71 VRRLMRYLAHNGFFEI-ITKEEESYALTVASELLVRGSDL-CLAPMVECVLDPTLSGSYH 128
Query: 136 GLRDAVMEGGI-PFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQN 194
L+ + E + F G +++ NP +N +++ AM + S + + + F
Sbjct: 129 ELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDG 188
Query: 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGD 254
+E +VDVGGG G T +I +P++K + FD P VV++ + +VGG+MF S+P D
Sbjct: 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNAD 248
Query: 255 AILMKWILHCWDDDHCLRILKNCYKAIPDN---GKVIVMNSIVPEIPEVSSSARETSLLD 311
A+L+K+ILH W D CLRILK C +A+ ++ GKV +++ ++ + + + + L+D
Sbjct: 249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMD 308
Query: 312 VLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFF 356
V + G+ER ++E+ +L I AGF+H + L ++E +
Sbjct: 309 VNMACL--NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 380 bits (979), Expect = e-132
Identities = 88/343 (25%), Positives = 144/343 (41%), Gaps = 21/343 (6%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMML 76
+ +S + AMG A +AA +GV + + G + E+AA L
Sbjct: 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLV-DGPRTPAELAAATGTD----ADAL 72
Query: 77 DRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLG 136
R+LRLL V+ S + + LT S+ V + + D +F
Sbjct: 73 RRVLRLLAVRDVVRES----DGRFALTDKGAALRSD-SPVPARAGILMFTDTMFWTMSHR 127
Query: 137 LRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVE 196
+ A+ F + G + Y G+ Y++ M S + F
Sbjct: 128 VASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG-DFPATG 186
Query: 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVV----QDAPSYAG-VEHVGGNMFDSVP 251
+ DVGGG G L + ++P ++ V D VV DAP AG + V G+ VP
Sbjct: 187 TVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVP 246
Query: 252 EGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLD 311
D ++K ILH W D+ +RIL NC + +P +G+V+V++++VPE + A ++ +D
Sbjct: 247 HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGND----AHQSKEMD 302
Query: 312 VLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIME 354
+++ G+ERT E L AAG + + I
Sbjct: 303 FMMLAA-RTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAV 344
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 375 bits (965), Expect = e-130
Identities = 82/359 (22%), Positives = 154/359 (42%), Gaps = 24/359 (6%)
Query: 8 QLPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQA 67
Q P+ + + G A A++LGV E++ + G +A +A A
Sbjct: 25 QTPENPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGA 83
Query: 68 QNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLD 127
L R+LRLL + V + + L+ +S + + +
Sbjct: 84 H----EQTLRRLLRLLATVGVFDDL--GHDDLFAQNALSAVLLPD-PASPVATDARFQAA 136
Query: 128 KVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILE 187
+W L +V G F+ +G ++ +P E +++AM + S ++
Sbjct: 137 PWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAA 196
Query: 188 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVE 240
Y F VD+GGG G ++ + +P ++ + P V ++A E
Sbjct: 197 AY-DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCE 255
Query: 241 HVGGNMFDSVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPE 299
+ G+ F+++P+G D L+K +LH WDDD +RIL+ A+ + +++V+++++ E P
Sbjct: 256 ILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERP- 314
Query: 300 VSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC-VCNLYIMEFFK 357
A T +D+LL+ GG ER++ EF L +G + C + I+E +
Sbjct: 315 ----AASTLFVDLLLLVL-VGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 372 bits (958), Expect = e-129
Identities = 77/354 (21%), Positives = 140/354 (39%), Gaps = 23/354 (6%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMML 76
++ ++ +V PMA + A L + + + AG + +A + P L
Sbjct: 12 PTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL-AGADTLAGLADRTDT----HPQAL 66
Query: 77 DRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLG 136
R++R L VLE R T + ++ G
Sbjct: 67 SRLVRHLTVVGVLEGG-EKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTG 125
Query: 137 LRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVE 196
L D V G + +G +E S + +++ M +A E + Y + V
Sbjct: 126 LLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAY-DWSAVR 184
Query: 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVEHVGGNMFDS 249
++DVGGG G L+ I + P ++ +L + A V G+ F
Sbjct: 185 HVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP 244
Query: 250 VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS 308
+P D +L+ ++L W D+ L IL+ C +A+ G+++V++ E + ++
Sbjct: 245 LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDG--ADRFFST 302
Query: 309 LLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINF-----ASCVCNLYIMEFFK 357
LLD+ ++T GGR RT+ E +LA +AG + + + I+EF
Sbjct: 303 LLDLRMLTF-MGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 367 bits (944), Expect = e-127
Identities = 103/358 (28%), Positives = 168/358 (46%), Gaps = 21/358 (5%)
Query: 17 EEEESY---SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK-LSAPEIAAQLQAQNVKA 72
EE E Y H + V MA ++A++LG+ + I GK ++ E+A+ L+ K
Sbjct: 3 EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKV 62
Query: 73 PMMLDRMLRLLVSHRVLECSVSSG-------ERLYGLTPVSKYFVSNKDGVSLGHFMALP 125
+ L R LRLL + ++ G E Y LTP SK +S K L +
Sbjct: 63 NI-LHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIVKGA 120
Query: 126 LDKVFMESWLGLRDAVMEGG--IPFNRVHGMHIFEYASGNPGFN--ETYHKAMFNHSTIA 181
L ++ W + E F G +++ + + + + AM + S +
Sbjct: 121 LHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180
Query: 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEH 241
+ E+ F+ +E LVDVGGG G +I +P +K FD P VV + +
Sbjct: 181 KLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF 240
Query: 242 VGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIP---DNGKVIVMNSIVPEIP 298
VGG+MF S+P DA+L+KW+LH W+D+ L+ILKN +AI +GKVI+++ + E
Sbjct: 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 300
Query: 299 EVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFF 356
+ D++++T G+ERTK+E+ +L AGF ++E +
Sbjct: 301 DDRGLTELQLDYDLVMLTM-FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 366 bits (941), Expect = e-127
Identities = 80/345 (23%), Positives = 140/345 (40%), Gaps = 26/345 (7%)
Query: 19 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDR 78
+ + ++ + PMA + A L V + IA AG +A EIA+ A LDR
Sbjct: 3 KRAAHIGLRALADLATPMAVRVAATLRVADHIA-AGHRTAAEIASAAGAH----ADSLDR 57
Query: 79 MLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLR 138
+LR LV+ + G+ +YGLT + + ++ L
Sbjct: 58 LLRHLVAVGLFTRD---GQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELA 114
Query: 139 DAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERL 198
++ G + +G +E +P + ++ M +H + I Y + + +
Sbjct: 115 HSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKY-DWAALGHV 173
Query: 199 VDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFDSVP 251
VDVGGG G LS + + + + DL A + V G+ FD +P
Sbjct: 174 VDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP 233
Query: 252 EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL 310
G ++ +LH WDD + IL+ C +A G V+V+ ++ + + +
Sbjct: 234 AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD-------EHAGTGM 286
Query: 311 DVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEF 355
D+ ++T GG+ER+ E ELA AG + + I+E
Sbjct: 287 DLRMLTY-FGGKERSLAELGELAAQAGLAVRAA-HPISYVSIVEM 329
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 366 bits (942), Expect = e-126
Identities = 72/334 (21%), Positives = 134/334 (40%), Gaps = 21/334 (6%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMML 76
++ + + PM + A L + + I AG + +AA+ + P L
Sbjct: 15 PQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHIL-AGARTVKALAARTDTR----PEAL 69
Query: 77 DRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLG 136
R++R LV+ +LE + T V + + S+
Sbjct: 70 LRLIRHLVAIGLLEED---APGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTR 126
Query: 137 LRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVE 196
L DA+ G + ++G +E +G P ++ + +A + Y + NV
Sbjct: 127 LPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DWTNVR 185
Query: 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVEHVGGNMFDS 249
++DVGGG G + I + P + A ++ V A SY V+ V G+ F+
Sbjct: 186 HVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP 245
Query: 250 VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS 308
+P DAI++ ++L W D +RIL C +A+ G++++ +
Sbjct: 246 LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFT--- 302
Query: 309 LLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342
LD+ ++ GG RT++++ LA +AG
Sbjct: 303 ELDLRMLVF-LGGALRTREKWDGLAASAGLVVEE 335
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 357 bits (919), Expect = e-123
Identities = 81/349 (23%), Positives = 130/349 (37%), Gaps = 27/349 (7%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMML 76
+ + +Q+ G A +LG+ ++I G S +AA + + +
Sbjct: 4 SNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGSD----AERI 58
Query: 77 DRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLG 136
R++RLLV+ + + Y TP S + S M L + F +W
Sbjct: 59 HRLMRLLVAFEIFQGD---TRDGYANTPTSHLLRDVEG--SFRD-MVLFYGEEFHAAWTP 112
Query: 137 LRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVE 196
+A++ G F G + Y P + AM S +A I + F+
Sbjct: 113 ACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-R 169
Query: 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVEHVGGNMFDS 249
VDVGGG G I P + V D + A V VGG+M
Sbjct: 170 SFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE 229
Query: 250 VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS 308
VP D L+ I+ D+ LR+L NC +A+ +G+V+V+ + S + +
Sbjct: 230 VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA----SEPSPMSV 285
Query: 309 LLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357
L DV L GR RT +E +L GF ++ +
Sbjct: 286 LWDVHLFMA-CAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 311 bits (798), Expect = e-105
Identities = 60/336 (17%), Positives = 137/336 (40%), Gaps = 29/336 (8%)
Query: 17 EEEESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMM 75
+ Y A +L G++ +AAI+L +F +A+ G +AA + P
Sbjct: 26 DLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPR 80
Query: 76 LDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSN--KDGVSLGHFMALPLDKVFMES 133
L+ +L L RV+ + + LT + Y S K+ +A + + +
Sbjct: 81 LEMLLETLRQMRVINLE----DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDF 136
Query: 134 WLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQ 193
++GL AV + Y N + + +++ A++ +LE
Sbjct: 137 YMGLSQAVRGQK------NFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEA-KLD 189
Query: 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVGGNM 246
V++++DVGGG G + + +P++ + +LP + A + + ++
Sbjct: 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDI 249
Query: 247 F-DSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSAR 305
+ +S PE DA+L IL+ ++ + K + A+ G++++++ ++ + +
Sbjct: 250 YKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYL 309
Query: 306 ETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHI 341
+L + + + + E+ + G+K +
Sbjct: 310 SHYILGAGMPF--SVLGFKEQARYKEILESLGYKDV 343
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 298 bits (766), Expect = e-100
Identities = 59/325 (18%), Positives = 114/325 (35%), Gaps = 26/325 (8%)
Query: 26 MQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVS 85
A +AA++L VF I++ G S+ +A + Q + + LV
Sbjct: 11 FNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQTS----ERGMRMLCDYLVI 65
Query: 86 HRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGG 145
+ Y LT S F+ + +G + L + + L AV++GG
Sbjct: 66 IGFMTKQ----AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG 121
Query: 146 IPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGF 205
+ + F + M N + + + + E+ +++D+
Sbjct: 122 TAISSEGTL--SPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIE---PLKVLDISASH 176
Query: 206 GVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVGGNMF-DSVPEG-DAI 256
G+ + P + D V++ A A + G+ F D +
Sbjct: 177 GLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLV 236
Query: 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT 316
L+ LH +D C ++L+ A+ GKVIV + I + + + ++++
Sbjct: 237 LLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDR---ITPPDAAAFSLVMLA 293
Query: 317 RDGGGRERTKKEFTELAIAAGFKHI 341
G T E+ + AGF H
Sbjct: 294 TTPNGDAYTFAEYESMFSNAGFSHS 318
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 2e-95
Identities = 56/340 (16%), Positives = 124/340 (36%), Gaps = 28/340 (8%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK-LSAPEIAAQLQAQNVKAPMM 75
E+ A ++A G V+ ++ ++ G+F++++ + + EI+ +
Sbjct: 11 TAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLT----RYA 66
Query: 76 LDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWL 135
+L ++ + E Y L + +++ + V +
Sbjct: 67 AQVLLEASLTIGTILLE----EDRYVLAKAGWFLLND----KMARVNMEFNHDVNYQGLF 118
Query: 136 GLRDAVMEGGIPFNRVHGMH--IFEYASGNP-GFNETYHKAMFNHSTIAMERILEHYEGF 192
L +A++ G +V G I+E S P +++ +S + + LE
Sbjct: 119 HLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIV-FS 177
Query: 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVGGN 245
+ +RL+D+GG G + +++ DLP ++ + G N
Sbjct: 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGAN 237
Query: 246 MFD---SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVS 301
+ D P G DA+ M L C+ ++ + IL ++I + KV +M ++ +
Sbjct: 238 LLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYET 297
Query: 302 SSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHI 341
+S T + +G + + AG +
Sbjct: 298 ASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVE 337
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 279 bits (715), Expect = 2e-92
Identities = 45/353 (12%), Positives = 113/353 (32%), Gaps = 34/353 (9%)
Query: 1 MRSLSEIQLPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPE 60
M + + + + S ++L+ A+ +F++ + E
Sbjct: 4 MNASAVETIYESTEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQTG--RTPAE 61
Query: 61 IAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS-KYFVSNKDGVSLG 119
+AA +L L + +L + T ++ +Y + +G
Sbjct: 62 VAASFGMV----EGKAAILLHALAALGLLTKE----GDAFRNTALTERYLTTTSAD-YIG 112
Query: 120 HFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHST 179
+ + ++W L + + + + + + ++ AM S
Sbjct: 113 PI--VEHQYLQWDNWPRLGEILRSE-----KPLAFQQESRFAHDTRARDAFNDAMVRLSQ 165
Query: 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG- 238
++ + E F ++D+ GG G L+ + ++PQ+ +DLP A
Sbjct: 166 PMVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHA 224
Query: 239 ------VEHVGGNMFDSVPEG----DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVI 288
VE N+ D+ D +++ LH +D ++ + + G ++
Sbjct: 225 HDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALL 284
Query: 289 VMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHI 341
++ + + + ++ + +M G + AG
Sbjct: 285 ILTMT---MNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVG 334
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 4e-08
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 11/142 (7%)
Query: 165 GFNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVN 223
G N S ++R L +D G G G + ++ V+
Sbjct: 50 GGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVD 109
Query: 224 FDLPHVVQDAPSYAG------VEHVGGNMFDSVPEG---DAILMKWILHCWDDDHCLRIL 274
+ A +Y G + + D PE D I ++W++ D H L
Sbjct: 110 IT-EDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFL 168
Query: 275 KNCYKAIPDNGKVIVMNSIVPE 296
+ C ++ NG +++ +++ E
Sbjct: 169 RRCKGSLRPNGIIVIKDNMAQE 190
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-05
Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG----VEHVGGNMFDSVPE 252
R +D G G G + +K + + H++++A + + +M +
Sbjct: 96 RALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLP 155
Query: 253 G---DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296
D I+++W D ++ K+C +A+ NG + +
Sbjct: 156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG 202
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 24/177 (13%), Positives = 59/177 (33%), Gaps = 18/177 (10%)
Query: 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PSYA 237
+ ++D+G G G+ + + KYP+ D+ +++ A
Sbjct: 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL 92
Query: 238 GVEHVGGNMFDSVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295
V+++ + E D ++ +H +D+ + K Y + ++G I + +
Sbjct: 93 KVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG 152
Query: 296 EIPEVSSSARETSLLDVLLM-----------TRDGGGRERTKKEFTELAIAAGFKHI 341
E + + + V R ++ + AGF+ +
Sbjct: 153 ETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDV 209
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 52/293 (17%), Positives = 92/293 (31%), Gaps = 109/293 (37%)
Query: 61 IAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV-SKYFVSNKDGVSLG 119
+ + ++ + + P M M R+ + R +RLY V +KY VS
Sbjct: 94 LMSPIKTEQ-RQPSM---MTRMYIEQR---------DRLYNDNQVFAKYNVSRLQ----- 135
Query: 120 HFMALPLDKVFMESWLGLRDAVME----GGIPFNRVHGMHIFEYASGNPGFNETYHKAMF 175
P K LR A++E + + G+ G K
Sbjct: 136 -----PYLK--------LRQALLELRPAKNVL---IDGV---------LGSG----K--- 163
Query: 176 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS 235
+ +A++ L + V+ +D F + L S ++ + L + Q P+
Sbjct: 164 --TWVALDVCLSY-----KVQCKMD-FKIFWLNLKNCNSPETVLEMLQ-KLLY--QIDPN 212
Query: 236 YAGVEHVGGNM---FDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292
+ N+ S+ L+K + +CL +L N V N
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NCLLVL--------LN----VQN- 255
Query: 293 IVPEIPEVSSSARETSLLD----VLLMTRDGGGRERTKKEFTELAIAAGFKHI 341
+ + +LL TR K+ T+ AA HI
Sbjct: 256 --AKAWNA---------FNLSCKILLTTRF--------KQVTDFLSAATTTHI 289
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.86 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.84 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.79 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.78 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.77 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.77 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.77 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.76 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.76 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.74 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.74 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.74 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.74 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.73 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.73 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.73 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.72 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.72 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.72 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.72 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.72 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.71 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.71 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.71 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.7 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.7 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.7 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.7 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.7 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.7 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.7 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.69 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.69 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.69 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.68 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.68 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.68 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.68 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.68 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.67 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.67 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.67 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.66 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.65 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.65 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.65 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.64 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.64 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.63 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.63 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.63 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.62 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.62 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.62 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.62 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.61 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.61 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.6 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.59 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.58 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.57 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.56 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.55 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.55 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.54 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.53 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.52 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.52 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.52 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.52 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.52 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.51 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.51 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.51 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.5 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.5 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.49 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.49 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.49 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.48 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.47 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.47 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.47 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.45 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.44 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.44 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.43 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.41 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.41 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.4 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.4 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.39 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.37 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.37 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.36 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.35 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.35 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.35 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.35 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.34 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.34 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.34 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.34 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.33 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.32 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.32 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.31 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.3 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.3 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.3 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.29 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.29 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.29 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.28 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.28 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.28 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.28 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.28 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.28 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.27 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.27 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.27 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.27 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.26 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.26 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.25 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.24 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.23 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.23 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.23 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.23 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.23 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.23 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.23 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.22 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.22 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.22 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.22 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.21 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.19 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.19 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.18 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.18 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.18 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.16 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.15 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.15 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.15 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.14 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.14 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.13 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.13 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.12 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.12 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.12 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.12 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.12 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.11 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.11 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.11 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.1 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.1 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.1 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.1 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.09 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.09 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.09 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.09 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.08 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.08 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.07 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.04 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.03 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.03 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.03 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.02 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.02 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.02 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.01 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.01 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.0 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.99 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.99 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.98 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.98 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.98 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.98 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.98 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.97 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.97 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.97 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.96 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.95 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.95 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.95 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.94 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.94 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.93 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.93 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.92 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.92 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.92 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.88 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.88 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.88 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.84 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.82 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.82 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.81 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.81 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.8 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.79 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.79 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.78 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.78 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.77 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.75 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.75 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.72 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.68 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.66 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.64 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.64 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.6 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.6 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.52 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.52 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.5 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.49 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.47 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.45 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.44 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.43 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.42 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.42 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.41 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.4 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.4 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.39 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.38 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.37 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.34 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.33 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.32 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.31 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.28 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.26 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.24 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.22 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.19 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.17 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.1 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.09 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 98.02 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.98 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.98 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.9 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.87 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.85 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.84 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.84 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.83 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.79 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.63 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.61 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.6 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.59 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.56 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.56 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.54 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.54 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.54 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.47 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.4 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.37 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 97.36 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.27 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 97.21 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.15 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 97.07 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.02 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.98 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 96.97 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 96.93 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 96.92 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 96.92 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 96.82 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 96.77 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 96.76 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 96.7 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 96.65 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 96.63 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 96.56 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 96.5 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 96.49 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 96.48 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 96.46 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 96.4 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 96.37 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 96.27 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 96.26 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 96.25 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.2 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.17 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 96.12 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.02 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 95.96 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 95.95 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 95.92 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.92 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 95.89 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 95.85 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 95.8 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 95.78 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 95.73 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 95.72 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 95.7 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 95.68 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 95.68 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 95.67 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 95.67 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 95.61 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 95.6 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 95.58 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 95.58 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 95.57 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 95.55 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 95.54 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 95.53 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 95.52 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 95.5 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 95.49 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 95.48 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 95.48 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 95.44 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.44 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 95.43 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 95.42 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 95.42 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 95.36 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 95.35 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 95.34 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 95.33 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 95.33 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 95.31 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 95.28 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 95.25 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 95.24 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 95.23 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 95.22 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 95.19 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 95.18 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 95.17 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 95.15 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.15 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 95.14 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 95.13 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 95.06 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 95.06 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 95.03 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 95.02 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 94.98 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 94.98 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 94.95 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 94.94 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 94.91 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 94.9 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 94.9 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 94.87 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 94.82 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 94.8 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 94.79 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 94.7 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 94.68 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 94.61 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 94.58 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 94.49 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.46 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 94.36 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 94.28 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 94.21 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 94.17 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 94.03 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 93.99 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 93.93 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 93.78 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 93.75 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 93.67 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 93.57 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 93.54 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 93.53 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 93.4 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 93.24 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 93.24 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 93.2 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 93.11 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 93.03 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 92.93 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 92.87 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 92.84 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 92.71 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 92.57 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 92.51 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 92.27 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 92.02 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 91.96 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 91.94 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 91.85 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 91.8 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 91.65 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 91.63 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 91.62 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 91.59 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 91.52 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 91.51 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 91.44 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 91.4 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 91.32 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 91.3 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 91.15 | |
| 2g9w_A | 138 | Conserved hypothetical protein; DNA-binding domain | 90.6 | |
| 3cta_A | 230 | Riboflavin kinase; structural genomics, transferas | 90.21 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 90.17 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 90.11 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 90.01 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 89.92 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 89.82 | |
| 1sd4_A | 126 | Penicillinase repressor; BLAI, MECI, methicillin, | 89.75 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 89.61 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 89.45 | |
| 3elk_A | 117 | Putative transcriptional regulator TA0346; structu | 89.22 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 88.96 | |
| 1hsj_A | 487 | Fusion protein consisting of staphylococcus access | 88.33 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 88.17 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 88.17 | |
| 3f8b_A | 116 | Transcriptional regulator, PADR-like family; winge | 88.03 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 87.87 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 87.85 | |
| 3l7w_A | 108 | Putative uncharacterized protein SMU.1704; PADR, t | 87.5 | |
| 2v79_A | 135 | DNA replication protein DNAD; primosome, DNA-bindi | 86.73 | |
| 1jhg_A | 101 | Trp operon repressor; complex (regulatory protein- | 86.64 | |
| 3i71_A | 68 | Ethanolamine utilization protein EUTK; helix-turn- | 86.37 | |
| 3mwm_A | 139 | ZUR, putative metal uptake regulation protein; FUR | 86.22 | |
| 3hhh_A | 116 | Transcriptional regulator, PADR family; PF03551, s | 86.21 | |
| 1xma_A | 145 | Predicted transcriptional regulator; southea colla | 85.37 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 84.95 | |
| 2vxz_A | 165 | Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py | 84.93 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 84.8 | |
| 1mzb_A | 136 | Ferric uptake regulation protein; ferric uptake re | 84.63 | |
| 1yg2_A | 179 | Gene activator APHA; virulence factor, winged heli | 84.59 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 84.33 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 84.23 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 84.07 | |
| 3eyi_A | 72 | Z-DNA-binding protein 1; alternative splicing, DNA | 84.03 | |
| 1bia_A | 321 | BIRA bifunctional protein; transcription regulatio | 83.9 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 83.81 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 83.39 | |
| 1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependen | 83.29 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 83.02 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 82.77 | |
| 2p5k_A | 64 | Arginine repressor; DNA-binding domain, winged hel | 82.52 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 82.17 | |
| 3cuq_B | 218 | Vacuolar protein-sorting-associated protein 36; ES | 81.97 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 81.83 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 81.07 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 81.01 | |
| 2yu3_A | 95 | DNA-directed RNA polymerase III 39 kDa polypeptide | 80.82 | |
| 3ri2_A | 123 | Transcriptional regulator, PADR-like family; PSI-b | 80.54 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 80.54 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-55 Score=407.15 Aligned_cols=331 Identities=24% Similarity=0.409 Sum_probs=294.7
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccC
Q 018366 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS 95 (357)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 95 (357)
.+.+.++.|.+++.||+.+++|++|+++||||.|.+. +|.|++|||+++++ +++.++||||+|++.|++.+..++
T Consensus 4 ~e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~ 79 (353)
T 4a6d_A 4 SEDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRG 79 (353)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccC
Confidence 3558899999999999999999999999999999874 48999999999999 999999999999999999875434
Q ss_pred CCcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccC---CChhhhcccCcchHHHHHH
Q 018366 96 GERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHG---MHIFEYASGNPGFNETYHK 172 (357)
Q Consensus 96 ~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g---~~~~~~~~~~~~~~~~~~~ 172 (357)
+.+.|++|+.+..++...++.++++++.+. .+..+..|.+|.+++++|++++...+| .++|+++.++++....|.+
T Consensus 80 ~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~ 158 (353)
T 4a6d_A 80 GKAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQ 158 (353)
T ss_dssp TEEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHH
T ss_pred ccceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHH
Confidence 456899999999887777777888887765 356788999999999999999888777 4678888899999999999
Q ss_pred HHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC------CCCceEEEcCC
Q 018366 173 AMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS------YAGVEHVGGNM 246 (357)
Q Consensus 173 ~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~v~~~~~D~ 246 (357)
+|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.+|+
T Consensus 159 aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~ 237 (353)
T 4a6d_A 159 ALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDF 237 (353)
T ss_dssp HHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCT
T ss_pred HHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCcc
Confidence 999998888888999888 88889999999999999999999999999999999999887754 27899999999
Q ss_pred CC-CCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 247 FD-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 247 ~~-~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
++ +.|.+|+|+++++||+|+|+++.++|++++++|+|||+|+|+|.+.++++..+ .....+|+.|+..+ +|++||
T Consensus 238 ~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~-~g~ert 313 (353)
T 4a6d_A 238 FKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT-EGQERT 313 (353)
T ss_dssp TTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-SCCCCC
T ss_pred ccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-CCcCCC
Confidence 98 55666999999999999999999999999999999999999999988754433 23457788888865 999999
Q ss_pred HHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 326 KKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.+||+++|++|||+.+++++.++..++|+++|
T Consensus 314 ~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 314 PTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp HHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred HHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 99999999999999999999988899999987
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-54 Score=399.12 Aligned_cols=344 Identities=47% Similarity=0.867 Sum_probs=301.2
Q ss_pred CchhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC--CCCCHHHHHHHhCc-CCCCCcchHHHHHHHHhcCccee
Q 018366 14 NKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GKLSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLE 90 (357)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~--g~~t~~~la~~~~~-~~~~~~~~l~~~L~~L~~~g~l~ 90 (357)
...++.+.+..+++++.+++.+++|++|+++||||.|.+. +|.|++|||+++++ +++..+..++||||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 4455679999999999999999999999999999999984 48999999999995 21112239999999999999999
Q ss_pred eecc---CC--CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcc
Q 018366 91 CSVS---SG--ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPG 165 (357)
Q Consensus 91 ~~~~---~~--~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~ 165 (357)
+... ++ ++.|++|+.+..|+.++++.++++++.+...+.++..|.+|.+++++|.++|+..+|.++|+|+.++++
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~ 172 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPR 172 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHH
Confidence 7521 11 378999999998887776678898887766677889999999999999999998899999999999999
Q ss_pred hHHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcC
Q 018366 166 FNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 245 (357)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 245 (357)
..+.|.++|...+......+++.++++++..+|||||||+|.++..+++.+|+++++++|+|++++.+++.++|+++.+|
T Consensus 173 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 252 (364)
T 3p9c_A 173 FNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGD 252 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCC
Confidence 99999999999888777888888876777899999999999999999999999999999999999999988999999999
Q ss_pred CCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 246 MFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 246 ~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
+++++|.+|+|++.++||+|+++++.++|++++++|||||+|+|+|.+.++.+...........+++.|+....+++.+|
T Consensus 253 ~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt 332 (364)
T 3p9c_A 253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERY 332 (364)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCB
T ss_pred cCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCC
Confidence 99888867999999999999999999999999999999999999999987654433233334567888875434899999
Q ss_pred HHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 326 KKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.++|+++|+++||+.+++.+..++.++||++|
T Consensus 333 ~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 333 EREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 99999999999999999999999999999997
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-54 Score=401.08 Aligned_cols=357 Identities=52% Similarity=0.915 Sum_probs=299.6
Q ss_pred CCcccccccCCCCCchhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-C---CCCHHHHHHHhCcCCCCCcchH
Q 018366 1 MRSLSEIQLPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-G---KLSAPEIAAQLQAQNVKAPMML 76 (357)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g---~~t~~~la~~~~~~~~~~~~~l 76 (357)
|.|+.|.|.+++--...+.+.+..+++++.+++.+++|++|+++||||.|.+. | |.|++|||++++..++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l 80 (368)
T 3reo_A 1 MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVML 80 (368)
T ss_dssp ----------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHH
T ss_pred CCCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhH
Confidence 67777777532223346779999999999999999999999999999999983 3 6999999999983122233499
Q ss_pred HHHHHHHhcCcceeeecc---CC--CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccc
Q 018366 77 DRMLRLLVSHRVLECSVS---SG--ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRV 151 (357)
Q Consensus 77 ~~~L~~L~~~g~l~~~~~---~~--~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~ 151 (357)
+||||+|++.|++++... ++ ++.|++|+.+..|+.+.++.++++++.+...+.++..|.+|.+++++|.++|+..
T Consensus 81 ~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~ 160 (368)
T 3reo_A 81 DRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKA 160 (368)
T ss_dssp HHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHH
Confidence 999999999999997421 11 3689999999988887766789988877666778899999999999999999988
Q ss_pred cCCChhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHH
Q 018366 152 HGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ 231 (357)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 231 (357)
+|.++|+|+.++++..+.|.++|...+......+++.++++++..+|||||||+|.++..+++.+|+++++++|+|++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 240 (368)
T 3reo_A 161 YGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240 (368)
T ss_dssp SSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT
T ss_pred hCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHH
Confidence 99999999999999999999999998888778888888767778899999999999999999999999999999999999
Q ss_pred hCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhh
Q 018366 232 DAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLD 311 (357)
Q Consensus 232 ~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~ 311 (357)
.+++.++|+++.+|+++++|.+|+|++.++||+|+++++.++|++++++|||||+|+|+|.+.++.+...........++
T Consensus 241 ~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d 320 (368)
T 3reo_A 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTD 320 (368)
T ss_dssp TCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHH
T ss_pred hhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhh
Confidence 99988899999999998888679999999999999999999999999999999999999998876544333333455678
Q ss_pred hhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 312 VLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 312 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+.|+....+++.+|.++|+++|+++||+.+++.+..++.++||++|
T Consensus 321 ~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 321 ALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 8777643489999999999999999999999999999999999986
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-49 Score=364.90 Aligned_cols=324 Identities=25% Similarity=0.357 Sum_probs=285.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC
Q 018366 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE 97 (357)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 97 (357)
..+....+++++.+++.+++|++|+++||||.|.+ ||.|++|||+++|+ +++.++||||+|++.|++++ ++
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~----~~ 89 (348)
T 3lst_A 19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD-GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRE----SD 89 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ET
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEe----cC
Confidence 34777899999999999999999999999999997 59999999999999 99999999999999999996 36
Q ss_pred cceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhc
Q 018366 98 RLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNH 177 (357)
Q Consensus 98 ~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
+.|++|+.+..++.+. +.++++++.+...+..+..|.+|.+++++|.++|...+|.++|+|+.++++....|.++|...
T Consensus 90 ~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 168 (348)
T 3lst_A 90 GRFALTDKGAALRSDS-PVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETV 168 (348)
T ss_dssp TEEEECTTTGGGSTTS-SSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CEEecCHHHHHHhcCC-CccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence 8999999999886544 456788777655566789999999999999999998899889999999999999999999998
Q ss_pred chhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-----CCCceEEEcCCCCCCCC
Q 018366 178 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGGNMFDSVPE 252 (357)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~D~~~~~p~ 252 (357)
.......+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+++++...+. .++|+++.+|+++++|.
T Consensus 169 ~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~ 247 (348)
T 3lst_A 169 SAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPH 247 (348)
T ss_dssp HHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCC
T ss_pred hhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCC
Confidence 8888888999888 88889999999999999999999999999999999887773321 25799999999987784
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.|+|++.++||+|+++++.++|++++++|||||+|+|.|...++.... .....+++.|+... +++.+|.++|.++
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~-~~~~~t~~e~~~l 322 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAAR-TGQERTAAELEPL 322 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHTT-SCCCCBHHHHHHH
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhcC-CCcCCCHHHHHHH
Confidence 499999999999999999999999999999999999999988764222 23346677777654 8899999999999
Q ss_pred HHHcCCceeEEeecCCceeEEEEeC
Q 018366 333 AIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 333 l~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
|+++||+++++.+..+..++||++|
T Consensus 323 l~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 323 FTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHHCCCceEEEEECCCCcEEEEEEe
Confidence 9999999999999778889999986
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-49 Score=366.34 Aligned_cols=327 Identities=24% Similarity=0.438 Sum_probs=288.8
Q ss_pred chhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc
Q 018366 15 KYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 94 (357)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 94 (357)
+..+.....++++++.+++.+++|++|+++||||.|.+ ||.|++|||+++|+ +++.++|||++|++.|++++.
T Consensus 32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~-- 104 (369)
T 3gwz_A 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL-- 104 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC--
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe--
Confidence 34444778899999999999999999999999999997 59999999999999 999999999999999999963
Q ss_pred CCCcc-eecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHH
Q 018366 95 SGERL-YGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKA 173 (357)
Q Consensus 95 ~~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (357)
+++. |++|+.++.+... .+.++.+++.+...+..+..|.+|.+++++|.++|...+|.++|+|+.++++....|..+
T Consensus 105 -~~~~~y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 182 (369)
T 3gwz_A 105 -GHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRA 182 (369)
T ss_dssp -SSTTEEECCHHHHTTSCC-TTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred -CCCceEecCHHHHHHhcC-CchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHH
Confidence 4678 9999999987544 445788887766555577899999999999999999888988999999999999999999
Q ss_pred HhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCC
Q 018366 174 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNM 246 (357)
Q Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~ 246 (357)
|..........+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++ .++|+++.+|+
T Consensus 183 m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~ 261 (369)
T 3gwz_A 183 MGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDF 261 (369)
T ss_dssp HHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCC
Confidence 99988887888888887 78889999999999999999999999999999999888887764 26899999999
Q ss_pred CCCCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 247 FDSVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 247 ~~~~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
++++|.. |+|++.++||+|+++++.++|++++++|||||+|+|+|.+.++.... . ...+++.|+... +++.+|
T Consensus 262 ~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~-~g~~~t 335 (369)
T 3gwz_A 262 FETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVLV-GGAERS 335 (369)
T ss_dssp TTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHH-SCCCBC
T ss_pred CCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhhc-CCccCC
Confidence 9877755 99999999999999999999999999999999999999988764321 1 456777777665 899999
Q ss_pred HHHHHHHHHHcCCceeEEee-cCCceeEEEEeC
Q 018366 326 KKEFTELAIAAGFKHINFAS-CVCNLYIMEFFK 357 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~~ 357 (357)
.++|+++|+++||+++++.+ ..+..++||++|
T Consensus 336 ~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 336 ESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 99999999999999999999 578889999986
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-48 Score=362.52 Aligned_cols=337 Identities=42% Similarity=0.746 Sum_probs=273.8
Q ss_pred HHHHHHH--HHHhhhhHHHHHHHHHHhChhHHHHhCC-C---CCHHHHHHHhCc--CCCCCcchHHHHHHHHhcCcceee
Q 018366 20 ESYSHAM--QLAMGVVLPMATQAAIQLGVFEIIAKAG-K---LSAPEIAAQLQA--QNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 20 ~~~~~~~--~~~~~~~~~~~l~~a~~lglfd~L~~~g-~---~t~~~la~~~~~--~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
+....++ +++.+++.+++|++|+++|||+.|.+.| | .|++|||+++++ ++|.+++.++||||+|++.|+|.+
T Consensus 21 ~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 100 (372)
T 1fp1_D 21 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTS 100 (372)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEe
Confidence 5566777 9999999999999999999999999855 6 999999999997 134467899999999999999997
Q ss_pred ec---cCC--CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcC-CCccccccCCChhhhcccCcc
Q 018366 92 SV---SSG--ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEG-GIPFNRVHGMHIFEYASGNPG 165 (357)
Q Consensus 92 ~~---~~~--~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g-~~~~~~~~g~~~~~~~~~~~~ 165 (357)
.. .++ .+.|++|+.+..++.+.+..++++++.+...+.++..|.+|.+++++| .++|+..+|.++|+++.++++
T Consensus 101 ~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~ 180 (372)
T 1fp1_D 101 TTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKK 180 (372)
T ss_dssp EEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHH
T ss_pred cccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHH
Confidence 41 011 369999999987765443257888887765667788999999999999 888988889889999999999
Q ss_pred hHHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcC
Q 018366 166 FNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 245 (357)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 245 (357)
....|..+|..........+++.++.+++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.++++++.+|
T Consensus 181 ~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d 260 (372)
T 1fp1_D 181 MNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGD 260 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCC
Confidence 99999999988887777888888865677889999999999999999999999999999999999999887889999999
Q ss_pred CCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 246 MFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 246 ~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
+++++|..|+|++.++||+|+++++.++|++++++|||||+++|.|...++....+........+++.|+... +++.+|
T Consensus 261 ~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~t 339 (372)
T 1fp1_D 261 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERT 339 (372)
T ss_dssp TTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEE
T ss_pred cccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc-CCccCC
Confidence 9987776799999999999999988999999999999999999999988764332211113456677666543 788899
Q ss_pred HHHHHHHHHHcCCceeEEeecCCc-eeEEEEeC
Q 018366 326 KKEFTELAIAAGFKHINFASCVCN-LYIMEFFK 357 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~~~~-~~vie~~~ 357 (357)
.++|.++|+++||+++++.+...+ .++||++|
T Consensus 340 ~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 340 EKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 999999999999999999885433 69999987
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-49 Score=361.15 Aligned_cols=316 Identities=25% Similarity=0.390 Sum_probs=276.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 23 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
..+.+++.+++.+++|++|+++||||.|.+ ||.|++|||+++++ +++.++|||++|++.|++.+ ++++.|.+
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~---~~~~~y~~ 78 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA-GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTR---DGQGVYGL 78 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---CTTSBEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEe---cCCCeEEc
Confidence 357889999999999999999999999987 69999999999999 99999999999999999996 34689999
Q ss_pred chhchhhhcCCCCCchhhhhhccCChhhH-HHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhcchhh
Q 018366 103 TPVSKYFVSNKDGVSLGHFMALPLDKVFM-ESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIA 181 (357)
Q Consensus 103 t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (357)
|+.+..+... ++.++.+++.+...+..+ ..|.+|.+++++|.++|...+|.++|+++.++++....|..+|.......
T Consensus 79 t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 157 (332)
T 3i53_A 79 TEFGEQLRDD-HAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELD 157 (332)
T ss_dssp CTTGGGGSTT-CTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHhcC-CchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhh
Confidence 9999988654 445788888766444455 78999999999999999888898899999999999999999999887766
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCCCCCCC-
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~~~p~~- 253 (357)
.+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++ .++|+++.+|+++++|..
T Consensus 158 ~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~ 236 (332)
T 3i53_A 158 YTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGA 236 (332)
T ss_dssp HTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSC
T ss_pred HHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCC
Confidence 667777776 77788999999999999999999999999999999888888764 268999999999877755
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|+++++||+|+++++.++|++++++|||||+|+|.|.+.++. .+ ...+++.|+... +++.+|.++|.++|
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~-----~~~~d~~~~~~~-~~~~~t~~e~~~ll 308 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HA-----GTGMDLRMLTYF-GGKERSLAELGELA 308 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----C-----CHHHHHHHHHHH-SCCCCCHHHHHHHH
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--Cc-----cHHHHHHHHhhC-CCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999987664 11 236677776654 89999999999999
Q ss_pred HHcCCceeEEeecCCceeEEEEeC
Q 018366 334 IAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 334 ~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+++||+++++.+.++ .++||++|
T Consensus 309 ~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 309 AQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHCCCEEEEEEECCC-cEEEEEee
Confidence 999999999999888 99999975
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-48 Score=357.70 Aligned_cols=336 Identities=28% Similarity=0.493 Sum_probs=287.5
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc
Q 018366 16 YEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 94 (357)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 94 (357)
.+-.+....+++++.+++.+++|++++++|||+.|.+. ||.|++|||+++++ +|.+++.++|||++|++.|++++..
T Consensus 11 ~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~- 88 (352)
T 1fp2_A 11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT- 88 (352)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEec-
Confidence 44557778999999999999999999999999999974 49999999999999 4445779999999999999999741
Q ss_pred CCCcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHh-cCCCccccccCCChhhhcccCcchHHHHHHH
Q 018366 95 SGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVM-EGGIPFNRVHGMHIFEYASGNPGFNETYHKA 173 (357)
Q Consensus 95 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (357)
++++.|++|+.+..++.+. +.++++++.+...+.++..|.+|.+.++ +|.++|+..+|.++|+++.++++....|..+
T Consensus 89 ~~~~~y~~t~~s~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 167 (352)
T 1fp2_A 89 KEEESYALTVASELLVRGS-DLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDA 167 (352)
T ss_dssp SSSEEEEECHHHHTTSTTS-SSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred CCCCeEeCCHHHHHHhCCC-CccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHH
Confidence 1358999999999777544 3578888877656677889999999999 8888898888989999999999999999999
Q ss_pred HhhcchhhHHHHHhhcc-cCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCCC
Q 018366 174 MFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPE 252 (357)
Q Consensus 174 ~~~~~~~~~~~i~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~ 252 (357)
|.......... ++.++ .+++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++.++++++.+|+++++|.
T Consensus 168 m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~ 246 (352)
T 1fp2_A 168 MASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPN 246 (352)
T ss_dssp HHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCC
T ss_pred HHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCC
Confidence 99888776666 67672 26777899999999999999999999999999999999999998877899999999887776
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCC---CCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPD---NGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEF 329 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 329 (357)
.|+|++.++||+|+++++.++|++++++||| ||+++|+|...++....+........+++.|+. . +++.+|.++|
T Consensus 247 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~ 324 (352)
T 1fp2_A 247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEW 324 (352)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHH
T ss_pred ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCHHHH
Confidence 7999999999999999889999999999999 999999999876643221111234456776665 4 5888999999
Q ss_pred HHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 330 TELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 330 ~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.++|+++||+.+++.+..+..++||++|
T Consensus 325 ~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 325 KKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 9999999999999999878889999987
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-48 Score=358.61 Aligned_cols=335 Identities=28% Similarity=0.484 Sum_probs=286.2
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc---
Q 018366 19 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS--- 94 (357)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~--- 94 (357)
.++...+++++.+++.+++|++|+++|||+.|.+. ||.|++|||+++++ ++.+++.++||||+|++.|+|.+...
T Consensus 8 ~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~~~~ 86 (358)
T 1zg3_A 8 YHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIVKGK 86 (358)
T ss_dssp TTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEECCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEeccccc
Confidence 35567888999999999999999999999999974 49999999999999 55568899999999999999997410
Q ss_pred C-C---CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcC--CCccccccCCChhhhcccCcchHH
Q 018366 95 S-G---ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEG--GIPFNRVHGMHIFEYASGNPGFNE 168 (357)
Q Consensus 95 ~-~---~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g--~~~~~~~~g~~~~~~~~~~~~~~~ 168 (357)
. + ++.|++|+.+..|+.+. +.++++++.+...+.++..|.+|.+++++| .++|+..+|.++|+++.++++..+
T Consensus 87 ~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~ 165 (358)
T 1zg3_A 87 EGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESST 165 (358)
T ss_dssp SSSCCCEEEEEECHHHHTTCTTS-TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHH
T ss_pred ccCCCCCCEEeCCHHHHHHhCCC-CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhh
Confidence 1 1 47999999998777544 357888887766667788999999999998 678888888889999999999999
Q ss_pred --HHHHHHhhcchhhHHHHHhhcc-cCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcC
Q 018366 169 --TYHKAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 245 (357)
Q Consensus 169 --~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 245 (357)
.|+.+|........ .+++.++ .+++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.++++++.+|
T Consensus 166 ~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d 244 (358)
T 1zg3_A 166 LSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGD 244 (358)
T ss_dssp HHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECC
T ss_pred HHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCc
Confidence 99999988777665 7777772 2567789999999999999999999999999999999999998887789999999
Q ss_pred CCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCC---CCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 246 MFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPD---NGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 246 ~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+++++|..|+|++.++||+|+++++.++|++++++||| ||+++|+|...++....+........+++.|+... +++
T Consensus 245 ~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~ 323 (358)
T 1zg3_A 245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF-LGK 323 (358)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH-SCC
T ss_pred cCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC-CCC
Confidence 99877767999999999999999899999999999999 99999999988764322111234456777776654 789
Q ss_pred cCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 323 ERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.+|.++|.++|+++||+.+++.+..+..++||++|
T Consensus 324 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 324 ERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp CEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 99999999999999999999999878889999987
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-47 Score=350.77 Aligned_cols=319 Identities=24% Similarity=0.371 Sum_probs=279.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcc
Q 018366 20 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERL 99 (357)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 99 (357)
.+...+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++++ +++.++|||++|++.|++.+. +++.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~-~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~---~~~~ 78 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD---TRDG 78 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec---CCCe
Confidence 466889999999999999999999999999987 59999999999999 999999999999999999963 3589
Q ss_pred eecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhcch
Q 018366 100 YGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHST 179 (357)
Q Consensus 100 y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (357)
|++|+.+..++ +++.++++++.+...+.+ ..|.+|.+++++|.++|+..+|.++|+++.++++....|..+| ....
T Consensus 79 y~~t~~s~~l~--~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~ 154 (334)
T 2ip2_A 79 YANTPTSHLLR--DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASN 154 (334)
T ss_dssp EEECHHHHTTS--SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGH
T ss_pred EecCHHHHHHh--CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHH
Confidence 99999998777 344578888876654444 8999999999999999988888899999999999999999999 8877
Q ss_pred hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCCCCCC
Q 018366 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFDSVPE 252 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~~~p~ 252 (357)
.....+++.++ +++ .+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|+++++|.
T Consensus 155 ~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 232 (334)
T 2ip2_A 155 LAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPS 232 (334)
T ss_dssp HHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCS
T ss_pred HHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCC
Confidence 77788888887 777 89999999999999999999999999999998888777642 5799999999987776
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
. |+|++.+++|+|+++++.++|++++++|||||+++|.|...++... ......+++.|+... +++.+|.++|.+
T Consensus 233 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~t~~e~~~ 307 (334)
T 2ip2_A 233 NGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP----SPMSVLWDVHLFMAC-AGRHRTTEEVVD 307 (334)
T ss_dssp SCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC----CHHHHHHHHHHHHHH-SCCCCBHHHHHH
T ss_pred CCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC----cchhHHhhhHhHhhC-CCcCCCHHHHHH
Confidence 5 9999999999999999999999999999999999999998765322 123456677776655 788999999999
Q ss_pred HHHHcCCceeEEeecCCceeEEEEeC
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+++++||+++++.+.++..++|+++|
T Consensus 308 ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 308 LLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999888889999986
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=341.01 Aligned_cols=323 Identities=18% Similarity=0.264 Sum_probs=259.9
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC
Q 018366 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG 96 (357)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 96 (357)
..+....+++++.+++.+++|++++++||||.|.+ +||.|++|||+++|+ +++.++|||++|++.|++++.
T Consensus 12 ~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~---- 83 (363)
T 3dp7_A 12 AAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE---- 83 (363)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE----
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec----
Confidence 44677889999999999999999999999999998 469999999999999 999999999999999999862
Q ss_pred CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccC--CChhhhcccCcchHH----HH
Q 018366 97 ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHG--MHIFEYASGNPGFNE----TY 170 (357)
Q Consensus 97 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g--~~~~~~~~~~~~~~~----~~ 170 (357)
++.|++|+.+..++.+.+ ...++.+. .+..+..|.+|.+++++|.+++...+| .++|+++.++++..+ .|
T Consensus 84 ~~~y~~t~~s~~L~~~~~---~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f 159 (363)
T 3dp7_A 84 EDRYVLAKAGWFLLNDKM---ARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGF 159 (363)
T ss_dssp TTEEEECHHHHHHHHCHH---HHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHH
T ss_pred CCEEecccchHHhhCCCc---ccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHH
Confidence 689999999987775432 22233322 355788999999999999988887787 689999999988665 36
Q ss_pred HHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEE
Q 018366 171 HKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVG 243 (357)
Q Consensus 171 ~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~ 243 (357)
...|..... ..++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. ++|+++.
T Consensus 160 ~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 235 (363)
T 3dp7_A 160 DHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHG 235 (363)
T ss_dssp HHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEE
T ss_pred HHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEE
Confidence 666654432 23444443 246689999999999999999999999999999999888877642 4799999
Q ss_pred cCCCCC---CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCc-hhhhhhhhhhhhhhhc
Q 018366 244 GNMFDS---VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS-SARETSLLDVLLMTRD 318 (357)
Q Consensus 244 ~D~~~~---~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (357)
+|++++ +|.. |+|++.++||+|+++++.++|++++++|||||+|+|+|.+.++.+.... ........++.++..
T Consensus 236 ~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~- 314 (363)
T 3dp7_A 236 ANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMAN- 314 (363)
T ss_dssp CCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSC-
T ss_pred ccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhC-
Confidence 999984 6654 9999999999999999999999999999999999999998876432110 001112233333332
Q ss_pred CCCccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEEeC
Q 018366 319 GGGRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEFFK 357 (357)
Q Consensus 319 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 357 (357)
.+++.+|.++|.++|+++||+++++.+.. .+.++|+++|
T Consensus 315 ~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 315 GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 36788999999999999999999998765 4588999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=337.50 Aligned_cols=324 Identities=23% Similarity=0.378 Sum_probs=276.3
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc
Q 018366 19 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER 98 (357)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 98 (357)
...+..+++++.+++.+++|.+++++|||+.|.+ ||.|++|||+++++ +++.++|||++|++.|++.+. +++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~---~~~ 85 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG---EKQ 85 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC---CC-
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe---CCC
Confidence 4567789999999999999999999999999976 69999999999999 999999999999999999963 345
Q ss_pred --ceecchhchhhhcCCCCCchhhhhhccCChhhH-HHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHh
Q 018366 99 --LYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFM-ESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMF 175 (357)
Q Consensus 99 --~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 175 (357)
.|++|+.+..+.... +.++++++.+...+..+ ..|.++.+.+++|.+++...+|.++|+++..+++....|..+|.
T Consensus 86 ~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~ 164 (374)
T 1qzz_A 86 GRPLRPTRLGMLLADGH-PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMS 164 (374)
T ss_dssp CCCCEECTTGGGGSTTC-TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCG
T ss_pred CeEEEEChHHHhhcCCC-cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHH
Confidence 899999988777544 45788888776544456 88999999999999998888888999999999999999999998
Q ss_pred hcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC
Q 018366 176 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD 248 (357)
Q Consensus 176 ~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~ 248 (357)
.........+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++|+++.+|+++
T Consensus 165 ~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 243 (374)
T 1qzz_A 165 CDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK 243 (374)
T ss_dssp GGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 887777778888887 777889999999999999999999999999999998888877642 479999999988
Q ss_pred CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee--ccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 249 SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS--IVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 249 ~~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
++|.. |+|++.+++|+|++++..++|++++++|||||+++|.|. ..++.. .......+++.++... +++.++
T Consensus 244 ~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~ 318 (374)
T 1qzz_A 244 PLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA----DRFFSTLLDLRMLTFM-GGRVRT 318 (374)
T ss_dssp CCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHHH-SCCCCC
T ss_pred cCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCC----CcchhhhcchHHHHhC-CCcCCC
Confidence 77775 999999999999999889999999999999999999998 665431 1223445676666554 788999
Q ss_pred HHHHHHHHHHcCCceeEEeecCCce-----eEEEEeC
Q 018366 326 KKEFTELAIAAGFKHINFASCVCNL-----YIMEFFK 357 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~~~~~-----~vie~~~ 357 (357)
.++|.++|+++||+++++.+.++.. ++|+++|
T Consensus 319 ~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 319 RDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 9999999999999999998887776 8999874
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-44 Score=332.41 Aligned_cols=326 Identities=23% Similarity=0.381 Sum_probs=278.7
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC
Q 018366 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG 96 (357)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 96 (357)
+......++++++.+++.+++|.+++++|||+.|.+ ||.|++|||+++++ ++..++|||++|++.|++.+. +
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~---~ 86 (360)
T 1tw3_A 15 PQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED---A 86 (360)
T ss_dssp --CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---E
T ss_pred CcccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec---C
Confidence 344567888999999999999999999999999976 69999999999999 999999999999999999963 3
Q ss_pred CcceecchhchhhhcCCCCCchhhhhhccCChh-hHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHh
Q 018366 97 ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKV-FMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMF 175 (357)
Q Consensus 97 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 175 (357)
++.|++|+.+..+..+. +.++++++.+...+. .+..|.+|.+.+++|.+++...+|.++|+++..+++....|...|.
T Consensus 87 ~g~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~ 165 (360)
T 1tw3_A 87 PGEFVPTEVGELLADDH-PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLA 165 (360)
T ss_dssp TTEEEECTTGGGGSTTS-TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHT
T ss_pred CCeEEeCHHHHHHhcCC-chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHH
Confidence 67899999988776543 457888877664333 5788999999999999888888888899998889999999999999
Q ss_pred hcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC
Q 018366 176 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD 248 (357)
Q Consensus 176 ~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~ 248 (357)
.......+.+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.+++. ++++++.+|+++
T Consensus 166 ~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 244 (360)
T 1tw3_A 166 CDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE 244 (360)
T ss_dssp TTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 888777778888887 777889999999999999999999999999999988788776542 479999999998
Q ss_pred CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec-cCCCCCCCchhhhhhhhhhhhhhhcCCCccCCH
Q 018366 249 SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI-VPEIPEVSSSARETSLLDVLLMTRDGGGRERTK 326 (357)
Q Consensus 249 ~~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 326 (357)
++|.. |+|++.+++|+|+++++.++|++++++|||||++++.|.. .++... ..+...+++.|+... +++.+|.
T Consensus 245 ~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~t~ 319 (360)
T 1tw3_A 245 PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF----NEQFTELDLRMLVFL-GGALRTR 319 (360)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC----SHHHHHHHHHHHHHH-SCCCCBH
T ss_pred CCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC----cchhhhccHHHhhhc-CCcCCCH
Confidence 77775 9999999999999998899999999999999999999987 554321 123345666666554 7889999
Q ss_pred HHHHHHHHHcCCceeEEeecCCc-----eeEEEEeC
Q 018366 327 KEFTELAIAAGFKHINFASCVCN-----LYIMEFFK 357 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~~~~-----~~vie~~~ 357 (357)
++|.++|+++||+++++.+.++. .++|+++|
T Consensus 320 ~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 320 EKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 99999999999999999887665 78999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=323.84 Aligned_cols=315 Identities=19% Similarity=0.246 Sum_probs=269.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 23 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
+.+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|++++ +++.|++
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~----~~~~y~~ 78 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTK----QAEGYRL 78 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT-SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEe----cCCEEec
Confidence 578999999999999999999999999997 69999999999999 99999999999999999985 2689999
Q ss_pred chhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhcchhhH
Q 018366 103 TPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAM 182 (357)
Q Consensus 103 t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (357)
|+.+..++...++.++++++.+...+..+..|.+|.+++++|.+++. + |+++.++++....|...|........
T Consensus 79 t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (335)
T 2r3s_A 79 TSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPA 152 (335)
T ss_dssp CHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHH
T ss_pred CHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhH
Confidence 99995444444456788888776555678899999999999887664 2 77888899999999999988888777
Q ss_pred HHHHhhcccC--CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCC
Q 018366 183 ERILEHYEGF--QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 183 ~~i~~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~ 252 (357)
..+++.++ + ++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|+++ +.+.
T Consensus 153 ~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 231 (335)
T 2r3s_A 153 QLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGN 231 (335)
T ss_dssp HHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCS
T ss_pred HHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC
Confidence 78888887 6 77789999999999999999999999999999998888777652 469999999998 6776
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
. |+|++.+++|+|++++..++|++++++|+|||+++++|...++....+ .....+++.|+....+++.+|.++|.+
T Consensus 232 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ 308 (335)
T 2r3s_A 232 DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEYES 308 (335)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHHHH
T ss_pred CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHHHH
Confidence 5 999999999999999999999999999999999999999876543222 234456666665544788999999999
Q ss_pred HHHHcCCceeEEeecCCceeEEEEe
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFF 356 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~ 356 (357)
+++++||+.+++.+..+..++++++
T Consensus 309 ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 309 MFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred HHHHCCCCeeeEEECCCCceeEEEe
Confidence 9999999999999887777776664
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=323.61 Aligned_cols=311 Identities=20% Similarity=0.347 Sum_probs=261.1
Q ss_pred hHHHHHHHHHHh-hhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC
Q 018366 19 EESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE 97 (357)
Q Consensus 19 ~~~~~~~~~~~~-~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 97 (357)
.+...++++++. +++.+++|++++++|||+.|.+ ||.|++|||+++++ +++.++|||++|++.|+|++. +
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~-~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~----~ 98 (359)
T 1x19_A 28 LNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE----D 98 (359)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----T
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC-CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee----C
Confidence 456677888885 8999999999999999999997 69999999999999 999999999999999999973 4
Q ss_pred cceecchhchhhhcCCCC---CchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcc---hHHHHH
Q 018366 98 RLYGLTPVSKYFVSNKDG---VSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPG---FNETYH 171 (357)
Q Consensus 98 ~~y~~t~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~---~~~~~~ 171 (357)
+.|++|+.+..++.++.+ .++++++.+. .+..+..|.+|.+++++|.+ |+++.++++ ....|.
T Consensus 99 ~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~~~~~~f~ 167 (359)
T 1x19_A 99 GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVTREDNLYF 167 (359)
T ss_dssp TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCSHHHHHHH
T ss_pred CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhhHHHHHHH
Confidence 699999986655555555 5788777664 35678899999999998754 566778888 889999
Q ss_pred HHHhhcch-hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEE
Q 018366 172 KAMFNHST-IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVG 243 (357)
Q Consensus 172 ~~~~~~~~-~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~ 243 (357)
.+|..... ...+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++++++.
T Consensus 168 ~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 246 (359)
T 1x19_A 168 EEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIA 246 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 99999888 77788888887 77888999999999999999999999999999999888887764 24699999
Q ss_pred cCCCC-CCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 244 GNMFD-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 244 ~D~~~-~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+|+++ +++.+|+|++.+++|+|+++++.++|++++++|||||+++|+|...++. ..+. ....+ .|+....+++
T Consensus 247 ~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~---~~~~~--~~~~~~~~g~ 320 (359)
T 1x19_A 247 VDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPN---FDYLS--HYILGAGMPF 320 (359)
T ss_dssp CCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCC---HHHHH--HHGGGGGSSC
T ss_pred CccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCch---HHHHH--HHHHhcCCCC
Confidence 99998 5666699999999999999889999999999999999999999987654 2211 11122 2332222466
Q ss_pred c----CCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 323 E----RTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 323 ~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
. ++.++|.++|+++||+++++.+.. ..++++++|
T Consensus 321 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 321 SVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp CCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred cccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 6 899999999999999999998877 788999886
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=322.75 Aligned_cols=312 Identities=14% Similarity=0.208 Sum_probs=257.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcce
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLY 100 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y 100 (357)
....+++++.+++.+++|++|+++|||+.|.+ |.|++|||+++|+ +++.++||||+|++.|++++. ++.|
T Consensus 24 ~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~--~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~----~~~y 93 (352)
T 3mcz_A 24 SVVDLVKLSDQYRQSAILHYAVADKLFDLTQT--GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKE----GDAF 93 (352)
T ss_dssp SHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC--CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEec----CCee
Confidence 33448999999999999999999999999976 9999999999999 999999999999999999963 4789
Q ss_pred ecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCc-cccccCCChhhhcccCcchHHHHHHHHhhcch
Q 018366 101 GLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIP-FNRVHGMHIFEYASGNPGFNETYHKAMFNHST 179 (357)
Q Consensus 101 ~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (357)
.+|+.+..++.++.+.+++.++.+. ...+..|.+|.+.+++|.+. |.. ..++..+++....|..+|.....
T Consensus 94 ~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~~~~~~f~~~m~~~~~ 165 (352)
T 3mcz_A 94 RNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDTRARDAFNDAMVRLSQ 165 (352)
T ss_dssp EECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc------ccccccCHHHHHHHHHHHHhhhh
Confidence 9999999777666666777776543 34678899999999998754 222 12345778888889999987333
Q ss_pred hhHHHHHhhcccCCC-CceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCCC--
Q 018366 180 IAMERILEHYEGFQN-VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFDS-- 249 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~~-- 249 (357)
. +..+++.++ +++ ..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. ++++++.+|++++
T Consensus 166 ~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 166 P-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARN 243 (352)
T ss_dssp H-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred h-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence 2 347788787 666 789999999999999999999999999999998888776542 4799999999984
Q ss_pred -CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 250 -VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 250 -~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
.+.. |+|++.+++|+|+++++.++|++++++|||||+++|+|.+.++....+ .....+++.|+....+++.+|.+
T Consensus 244 ~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~ 320 (352)
T 3mcz_A 244 FEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTP 320 (352)
T ss_dssp GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHH
T ss_pred cCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHH
Confidence 5655 999999999999999999999999999999999999999887653322 23456777776654578899999
Q ss_pred HHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 328 EFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+|+++|+++||++++.. .+..+++.++|
T Consensus 321 e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 321 WIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 99999999999999843 35577777765
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-21 Score=168.53 Aligned_cols=163 Identities=13% Similarity=0.201 Sum_probs=119.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC--CCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCCCEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEGDAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~D~i~~~~ 260 (357)
.++..+|||||||+|..+..+++.+ |+++++++|+ +.|++.|+++ .+|+++.+|+.+ +.+..|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 3567899999999999999999975 6789999999 8899887642 479999999988 665569999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh-hhhhhhhh-------------hcCCCccCCH
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS-LLDVLLMT-------------RDGGGRERTK 326 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~t~ 326 (357)
+||++++++...+|++++++|||||++++.|.....++... ..... ..++.... ...-....|.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 99999988888999999999999999999998776532110 00000 00100000 0000123588
Q ss_pred HHHHHHHHHcCCceeEEeecCCceeEEEEe
Q 018366 327 KEFTELAIAAGFKHINFASCVCNLYIMEFF 356 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 356 (357)
+++.++|++|||+.++++...-++..+.++
T Consensus 226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~ 255 (261)
T 4gek_A 226 ETHKARLHKAGFEHSELWFQCFNFGSLVAL 255 (261)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEEeccEEEEEEE
Confidence 999999999999999986544344433343
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.7e-20 Score=158.53 Aligned_cols=171 Identities=14% Similarity=0.197 Sum_probs=126.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCC-CE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEG-DA 255 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~-D~ 255 (357)
..++..++...+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 44555554334668999999999999999999999999999999 777776654 2479999999988 55544 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh-hhh------------hhhhcCCCc
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL-DVL------------LMTRDGGGR 322 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~ 322 (357)
|++..++|++++++...+|++++++|||||++++.+...+...... ......+ ... .........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIE--NLNKTIWRQYVENSGLTEEEIAAGYERSKLDK 190 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH--HHHHHHHHHHHHTSSCCHHHHHTTC----CCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhh--hHHHHHHHHHHHhcCCCHHHHHHHHHhccccc
Confidence 9999999999888888899999999999999999998765431100 0000000 000 000001345
Q ss_pred cCCHHHHHHHHHHcCCceeEEeecCCceeEEEE
Q 018366 323 ERTKKEFTELAIAAGFKHINFASCVCNLYIMEF 355 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~ 355 (357)
.+|.+++.++|++|||+.+++.....+.+++-.
T Consensus 191 ~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~ 223 (234)
T 3dtn_A 191 DIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFG 223 (234)
T ss_dssp CCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEE
T ss_pred ccCHHHHHHHHHHcCCCceeeeeeecceeEEEE
Confidence 578999999999999999999877666665443
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-20 Score=157.87 Aligned_cols=169 Identities=14% Similarity=0.196 Sum_probs=120.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~ 253 (357)
..+++.++ .++. +|||+|||+|.++..+++. |+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 45555555 4444 9999999999999999998 7889999998 7888777652 479999999988 66654
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|++..++||+ ++...+|++++++|||||++++.+...+.................+......+...++.++|.+
T Consensus 111 ~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
T 3dlc_A 111 YADLIVSRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQN 188 (219)
T ss_dssp CEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHH
T ss_pred cccEEEECchHhhc--cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHH
Confidence 999999999999 5567899999999999999999875443210000000000000000000001234458899999
Q ss_pred HHHHcCCceeEEeecCCceeEEEEe
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFF 356 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~ 356 (357)
+|+++||+.+++.....+.|++..+
T Consensus 189 ~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 189 VLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHcCCCeEEEEecCCceEEEEec
Confidence 9999999999999887777765543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-18 Score=147.27 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=120.7
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCC-CCCCC-CEEEe
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD-SVPEG-DAILM 258 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~p~~-D~i~~ 258 (357)
.+++.+. ..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 4555554 346679999999999999999987 568999998 7788777653 479999999988 55543 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh---hhh--hhhhcCCCccCCHHHHHHHH
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL---DVL--LMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~t~~e~~~ll 333 (357)
..++||+++++...+|++++++|||||++++.++..+... ......... .+. ..... ....++.+++.++|
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQD---AYDKTVEAAKQRGFHQLANDLQ-TEYYTRIPVMQTIF 188 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHH---HHHHHHHHHHHTTCHHHHHHHH-HSCCCBHHHHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChH---HHHHHHHHHHhCCCccchhhcc-hhhcCCHHHHHHHH
Confidence 9999999888777799999999999999999987654311 000000000 000 00000 12345899999999
Q ss_pred HHcCCceeEEeecCCceeEEEEeC
Q 018366 334 IAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 334 ~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+++||+++.... .+..|++.+.|
T Consensus 189 ~~aGf~v~~~~~-~~~~w~~~~~~ 211 (220)
T 3hnr_A 189 ENNGFHVTFTRL-NHFVWVMEATK 211 (220)
T ss_dssp HHTTEEEEEEEC-SSSEEEEEEEE
T ss_pred HHCCCEEEEeec-cceEEEEeehh
Confidence 999998666544 57888887753
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=148.68 Aligned_cols=155 Identities=16% Similarity=0.171 Sum_probs=124.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~ 253 (357)
..+++.++ ..+..+|||+|||+|.++..+++.. |+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 45666666 6677899999999999999999997 7889999998 7888777652 479999999987 55554
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|++..++|+++ +...+|++++++|||||++++.+.......... .....++.+++.+
T Consensus 106 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 166 (219)
T 3dh0_A 106 TVDFIFMAFTFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL 166 (219)
T ss_dssp CEEEEEEESCGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred CeeEEEeehhhhhcC--CHHHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence 9999999999995 457999999999999999999987654421110 0123458999999
Q ss_pred HHHHcCCceeEEeecCCceeEEEEeC
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+++++||++++........+.+.++|
T Consensus 167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 167 ILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999988877777766654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=151.37 Aligned_cols=155 Identities=17% Similarity=0.309 Sum_probs=122.1
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----CCceEEEcCCCC-CCCCC--C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~p~~--D 254 (357)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 45666665 6677899999999999999999987 679999998 7788776653 689999999988 66554 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++..++||+++++...+|++++++|||||++++.+...+.... ....+...... . +...++.+++.++++
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~-~-~~~~~~~~~~~~~l~ 194 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN------WDDEFKEYVKQ-R-KYTLITVEEYADILT 194 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGG------CCHHHHHHHHH-H-TCCCCCHHHHHHHHH
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCccc------chHHHHHHHhc-C-CCCCCCHHHHHHHHH
Confidence 999999999998888999999999999999999999986654110 11111111111 1 455779999999999
Q ss_pred HcCCceeEEeecC
Q 018366 335 AAGFKHINFASCV 347 (357)
Q Consensus 335 ~aGf~~~~~~~~~ 347 (357)
++||+++++....
T Consensus 195 ~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 195 ACNFKNVVSKDLS 207 (266)
T ss_dssp HTTCEEEEEEECH
T ss_pred HcCCeEEEEEeCC
Confidence 9999999887653
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-18 Score=147.20 Aligned_cols=164 Identities=13% Similarity=0.293 Sum_probs=121.0
Q ss_pred HHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCC
Q 018366 169 TYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMF 247 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~ 247 (357)
.|..............+...++.+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~ 91 (240)
T 3dli_A 16 LFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAI 91 (240)
T ss_dssp HHHHHHTCCHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHH
Confidence 33333333333334445555554556789999999999999999998 457899998 8888888755 899999987
Q ss_pred C---CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 248 D---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 248 ~---~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+ +++.+ |+|++..++||+++++...+|++++++|||||++++..+.... . ......... ..+..
T Consensus 92 ~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~----~~~~~~~~~--~~~~~ 160 (240)
T 3dli_A 92 EYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS-----L----YSLINFYID--PTHKK 160 (240)
T ss_dssp HHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-----H----HHHHHHTTS--TTCCS
T ss_pred HHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-----h----HHHHHHhcC--ccccc
Confidence 6 55544 9999999999999888899999999999999999997764321 1 111111111 12445
Q ss_pred cCCHHHHHHHHHHcCCceeEEeecC
Q 018366 323 ERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
.++.+++.++++++||+++++....
T Consensus 161 ~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 161 PVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred cCCHHHHHHHHHHCCCeEEEEEEec
Confidence 6799999999999999998886654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-19 Score=153.38 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=118.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCC-C-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPE-G- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~-~- 253 (357)
..+.+.++ +..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +.+. .
T Consensus 30 ~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (227)
T 1ve3_A 30 PLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTF 104 (227)
T ss_dssp HHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCE
T ss_pred HHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcE
Confidence 34444443 467999999999999999999877 7888888 8888777652 679999999988 5554 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh--cC------------
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR--DG------------ 319 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------ 319 (357)
|+|++..++|++..++..++|++++++|||||++++.++..+...... ..........++... ..
T Consensus 105 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (227)
T 1ve3_A 105 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSE 183 (227)
T ss_dssp EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC---
T ss_pred EEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccc
Confidence 999999997777778889999999999999999999877532110000 000000000000000 00
Q ss_pred ------CCccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 320 ------GGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 320 ------~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
....++ .++.++|+++||+.+++.......++|+++|
T Consensus 184 ~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 184 QDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp --CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 011112 4899999999999999999877788999875
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=150.72 Aligned_cols=155 Identities=16% Similarity=0.298 Sum_probs=116.9
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~ 252 (357)
....+++.++ ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. +++.++.+|+.+ ++++
T Consensus 25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 3456677666 56778999999999999999999875 8899998 8888877642 579999999988 6665
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhh-hhhcCCCccCCHHHH
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLL-MTRDGGGRERTKKEF 329 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~ 329 (357)
+ |+|++..++||+++ ...+|++++++|||||++++.+...+..+ . ...++.... .....+...++.++|
T Consensus 102 ~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPEND---A---FDVFYNYVEKERDYSHHRAWKKSDW 173 (260)
T ss_dssp TCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred CCEEEEEEhhhhHhcCC--HHHHHHHHHHHcCCCCEEEEEEcCCCCCH---H---HHHHHHHHHHhcCccccCCCCHHHH
Confidence 4 99999999999964 46999999999999999999988665421 1 111111111 111113456799999
Q ss_pred HHHHHHcCCceeEEeec
Q 018366 330 TELAIAAGFKHINFASC 346 (357)
Q Consensus 330 ~~ll~~aGf~~~~~~~~ 346 (357)
.++|+++||+++.+...
T Consensus 174 ~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 174 LKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEEe
Confidence 99999999998877554
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-18 Score=144.29 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=113.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCCCCCCC--CEEE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFDSVPEG--DAIL 257 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~~~p~~--D~i~ 257 (357)
..+++.+....+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+..+.+ |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 345555543456679999999999999999998 568999998 8888887653 57999999998864443 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC------CccCCHHHHHH
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG------GRERTKKEFTE 331 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~t~~e~~~ 331 (357)
+..++||+++++...+|++++++|||||++++.+...+......... .............+ ...++.+++.+
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDD--SEPEVAVRRTLQDGRSFRIVKVFRSPAELTE 190 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhh--cccccceeeecCCcchhhHhhcCCCHHHHHH
Confidence 99999999988789999999999999999999987653321000000 00000000000001 22459999999
Q ss_pred HHHHcCCceeEEeec
Q 018366 332 LAIAAGFKHINFASC 346 (357)
Q Consensus 332 ll~~aGf~~~~~~~~ 346 (357)
+|+++||++......
T Consensus 191 ~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 191 RLTALGWSCSVDEVH 205 (218)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCEEEeeecc
Confidence 999999995544443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=148.70 Aligned_cols=161 Identities=19% Similarity=0.213 Sum_probs=120.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~- 253 (357)
..+++.++ ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+ +|..
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV 130 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCe
Confidence 45666666 66778999999999999999997764 49999998 7777776542 479999999865 3343
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCC-----CCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPE-----VSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
|+|++..++||+++++...+|++++++|||||++++.+...+.... .+.........+......++++..++.++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 210 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 210 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHH
Confidence 9999999999998778899999999999999999999987644210 00000000111111112234677889999
Q ss_pred HHHHHHHcCCceeEEeec
Q 018366 329 FTELAIAAGFKHINFASC 346 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~ 346 (357)
+.++++++||+++++...
T Consensus 211 ~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 211 VQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHhCCcEEEEEEeC
Confidence 999999999999988764
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=146.78 Aligned_cols=156 Identities=15% Similarity=0.193 Sum_probs=119.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~ 253 (357)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 45666666 6677899999999999999999987 679999998 7777766542 479999999988 66654
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|++..++||+++ ...+|++++++|||||++++.+......... ......+..... ..+...++.+++.+
T Consensus 129 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~ 201 (273)
T 3bus_A 129 SFDAVWALESLHHMPD--RGRALREMARVLRPGGTVAIADFVLLAPVEG----AKKEAVDAFRAG-GGVLSLGGIDEYES 201 (273)
T ss_dssp CEEEEEEESCTTTSSC--HHHHHHHHHTTEEEEEEEEEEEEEESSCCCH----HHHHHHHHHHHH-HTCCCCCCHHHHHH
T ss_pred CccEEEEechhhhCCC--HHHHHHHHHHHcCCCeEEEEEEeeccCCCCh----hHHHHHHHHHhh-cCccCCCCHHHHHH
Confidence 99999999999954 4799999999999999999999876432111 011111111111 23567789999999
Q ss_pred HHHHcCCceeEEeecC
Q 018366 332 LAIAAGFKHINFASCV 347 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~ 347 (357)
+++++||+++++....
T Consensus 202 ~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 202 DVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEECc
Confidence 9999999998887653
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-17 Score=147.22 Aligned_cols=162 Identities=17% Similarity=0.270 Sum_probs=122.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~- 253 (357)
..+++.++ ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+. +..
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~f 138 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPV 138 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCc
Confidence 45667666 66778999999999999999999976 78999998 8888777642 3799999998765 444
Q ss_pred CEEEeccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCch-----hhhhhhhhhhhhhhcCCC
Q 018366 254 DAILMKWILHCWDD-------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSS-----ARETSLLDVLLMTRDGGG 321 (357)
Q Consensus 254 D~i~~~~~lh~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 321 (357)
|+|++..++||+++ ++...+|++++++|||||++++.+...+........ .....+.++.....++++
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 218 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 218 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC
Confidence 99999999999944 667899999999999999999998876542100000 000001122222234577
Q ss_pred ccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 322 RERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 322 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
..++.+++.++++++||+++++...+
T Consensus 219 ~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 219 RLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 88999999999999999999887654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=144.31 Aligned_cols=154 Identities=16% Similarity=0.312 Sum_probs=116.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~ 253 (357)
...+++.+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 345666666 67788999999999999999999875 7888898 7788776542 579999999987 56543
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhh-hhhhcCCCccCCHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL-LMTRDGGGRERTKKEFT 330 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~e~~ 330 (357)
|+|++..++||++ +...+|++++++|||||++++.+...+.. .. ...+.... ......+...++.++|.
T Consensus 87 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (239)
T 1xxl_A 87 SFDIITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPED---PV---LDEFVNHLNRLRDPSHVRESSLSEWQ 158 (239)
T ss_dssp CEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSS---HH---HHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred cEEEEEECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCCCCC---hh---HHHHHHHHHHhccccccCCCCHHHHH
Confidence 9999999999995 45799999999999999999998876542 11 11111111 11111234567999999
Q ss_pred HHHHHcCCceeEEeec
Q 018366 331 ELAIAAGFKHINFASC 346 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~ 346 (357)
++|+++||+++++...
T Consensus 159 ~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEee
Confidence 9999999998877654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=146.79 Aligned_cols=149 Identities=17% Similarity=0.283 Sum_probs=116.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----CCceEEEcCCCC-CCCCC--C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~p~~--D 254 (357)
..+++.++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 45566665 5567899999999999999999886 457899998 7787776542 579999999887 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++.+++||+++++...+|++++++|||||++++.+........ ..+ . ......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~----~-~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVD----K-EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEE----T-TTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eec----c-cCCcccCCHHHHHHHHH
Confidence 999999999999888999999999999999999999875433110 000 0 11334579999999999
Q ss_pred HcCCceeEEeecC
Q 018366 335 AAGFKHINFASCV 347 (357)
Q Consensus 335 ~aGf~~~~~~~~~ 347 (357)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999886654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=147.61 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=115.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCC-CCCCC-CEEEecc-ccccCCh-
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFD-SVPEG-DAILMKW-ILHCWDD- 267 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~p~~-D~i~~~~-~lh~~~~- 267 (357)
+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+.. |+|++.. ++||+++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~ 127 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQ 127 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHH
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCH
Confidence 557999999999999999998854 7888898 888888765 3589999999988 55444 9999998 9999965
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchh---------hh-----------hhhhhhhhhhhcCC-------
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSA---------RE-----------TSLLDVLLMTRDGG------- 320 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~---------~~-----------~~~~~~~~~~~~~~------- 320 (357)
++...+|++++++|||||++++.+...+..-...... .. ...++..+.....+
T Consensus 128 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (263)
T 3pfg_A 128 AELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHE 207 (263)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEE
Confidence 5677999999999999999999654333311000000 00 00001111000001
Q ss_pred ----CccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 321 ----GRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 321 ----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.+.+|.++|.++|+++||+++++........++.++|
T Consensus 208 ~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 208 ESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 3356899999999999999999877666666665553
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=143.86 Aligned_cols=151 Identities=12% Similarity=0.161 Sum_probs=115.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEe
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILM 258 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~ 258 (357)
..+++.++ ..+..+|||||||+|.++..+++ |+.+++++|+ +.+++.+++..+++++.+|+.+ +++.+ |+|++
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 45666665 56778999999999999999998 6789999999 8899998887799999999987 66543 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGF 338 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 338 (357)
.+++||+ ++...+|++++++|| ||++++.+...+..... +....+...... . +...++.+++. +|+++||
T Consensus 101 ~~~l~~~--~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~-~~~~~~~~~~~-~l~~aGF 170 (261)
T 3ege_A 101 ILAIHHF--SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRI----WLYDYFPFLWED-A-LRFLPLDEQIN-LLQENTK 170 (261)
T ss_dssp ESCGGGC--SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCC----GGGGTCHHHHHH-H-HTSCCHHHHHH-HHHHHHC
T ss_pred cchHhhc--cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHH----HHHHHHHHHhhh-h-hhhCCCHHHHH-HHHHcCC
Confidence 9999999 556799999999999 99999988754332111 000111111111 1 34456788899 9999999
Q ss_pred ceeEEeec
Q 018366 339 KHINFASC 346 (357)
Q Consensus 339 ~~~~~~~~ 346 (357)
+.+++...
T Consensus 171 ~~v~~~~~ 178 (261)
T 3ege_A 171 RRVEAIPF 178 (261)
T ss_dssp SEEEEEEC
T ss_pred CceeEEEe
Confidence 98887654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=146.58 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=117.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~- 253 (357)
.++..++.+.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 45555544567789999999999999999998 7889999998 7888776642 569999999987 55544
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+|++..++|+++ ...+|++++++|||||++++.+.......... .....+... ....++.+++.++
T Consensus 115 fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMDA---YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence 9999999999983 46899999999999999999998754432111 112222111 2356789999999
Q ss_pred HHHcCCceeEEeecC
Q 018366 333 AIAAGFKHINFASCV 347 (357)
Q Consensus 333 l~~aGf~~~~~~~~~ 347 (357)
++++||+++++...+
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999987765
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=144.72 Aligned_cols=152 Identities=13% Similarity=0.114 Sum_probs=116.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~ 253 (357)
..++..+..+.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 345565544566789999999999999999999986 8999998 7788776542 459999999977 55543
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|++..++||++ ...+|++++++|||||++++.+.......... .....+... ....++.+++.+
T Consensus 114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~ 181 (257)
T 3f4k_A 114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCID 181 (257)
T ss_dssp CEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHHH
T ss_pred CEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHHH
Confidence 9999999999983 46899999999999999999997654422111 112222221 233578999999
Q ss_pred HHHHcCCceeEEeecC
Q 018366 332 LAIAAGFKHINFASCV 347 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~ 347 (357)
+|+++||++++....+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 182 KMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCeEEEEEECC
Confidence 9999999999987665
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-17 Score=147.67 Aligned_cols=153 Identities=14% Similarity=0.230 Sum_probs=116.9
Q ss_pred HHHHhhc---ccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CC
Q 018366 183 ERILEHY---EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SV 250 (357)
Q Consensus 183 ~~i~~~l---~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~ 250 (357)
..+++.+ ..+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ ++
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 146 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence 4566666 126677899999999999999999986 468999998 7787776542 579999999988 66
Q ss_pred CCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 251 PEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 251 p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
+.+ |+|++..++||+++ ...+|++++++|||||++++.++......... .....+ ... . .....+.++
T Consensus 147 ~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~---~~~-~-~~~~~~~~~ 216 (297)
T 2o57_A 147 EDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPIL---DRI-K-LHDMGSLGL 216 (297)
T ss_dssp CTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHH---HHH-T-CSSCCCHHH
T ss_pred CCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH---HHHHHH---HHh-c-CCCCCCHHH
Confidence 654 99999999999965 67999999999999999999998765432111 111111 111 1 234568999
Q ss_pred HHHHHHHcCCceeEEeec
Q 018366 329 FTELAIAAGFKHINFASC 346 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~ 346 (357)
+.++|+++||+++++...
T Consensus 217 ~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 217 YRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHCCCeEEEEEEC
Confidence 999999999999988664
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-17 Score=146.96 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=121.7
Q ss_pred HhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcC
Q 018366 174 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGN 245 (357)
Q Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D 245 (357)
+..........+++.++.+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 3344444445667766545677899999999999999999985 578999998 8888777642 479999999
Q ss_pred CCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 246 MFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 246 ~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+.+ +++.+ |+|++..++|+++ ...+|++++++|||||++++.+........... .......... ...
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-----KWVSQINAHF--ECN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-----HHHHHHHHHH--TCC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-----HHHHHHHhhh--cCC
Confidence 988 66644 9999999999994 679999999999999999999987655321111 1111111111 224
Q ss_pred cCCHHHHHHHHHHcCCceeEEeec
Q 018366 323 ERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
.++.++|.++|+++||+++++...
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeC
Confidence 678999999999999999988764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=145.45 Aligned_cols=153 Identities=10% Similarity=0.087 Sum_probs=116.0
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~ 252 (357)
...++..++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 345666666 6677899999999999999999987 568999998 7888777542 479999999988 4433
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
. |+|++..++|+++ +..++|++++++|||||++++.+......+... . ....... ......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATE---E---IAQACGV--SSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSH---H---HHHTTTC--SCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCcccCCCChH---H---HHHHHhc--ccccccCCHHHHHH
Confidence 3 9999999999995 457999999999999999999998765432111 0 1110000 11235679999999
Q ss_pred HHHHcCCceeEEeec
Q 018366 332 LAIAAGFKHINFASC 346 (357)
Q Consensus 332 ll~~aGf~~~~~~~~ 346 (357)
+|+++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887553
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=147.53 Aligned_cols=153 Identities=15% Similarity=0.288 Sum_probs=113.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--CEEEeccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG--DAILMKWI 261 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~--D~i~~~~~ 261 (357)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56778999999999999999999999999999998 7788777542 579999999987 55544 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhh-hhhhhcCCCccCCHHHHHHHHHHcCCce
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDV-LLMTRDGGGRERTKKEFTELAIAAGFKH 340 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 340 (357)
+|++++. ..+|++++++|||||++++.+.........+........+.. .......++..++..++.++|+++||++
T Consensus 115 l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 192 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred hhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence 9999654 589999999999999999988643221000000111111111 1111113566678899999999999999
Q ss_pred eEEeec
Q 018366 341 INFASC 346 (357)
Q Consensus 341 ~~~~~~ 346 (357)
+++...
T Consensus 193 v~~~~~ 198 (276)
T 3mgg_A 193 IRVEPR 198 (276)
T ss_dssp EEEEEE
T ss_pred EEEeeE
Confidence 988654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=145.45 Aligned_cols=161 Identities=17% Similarity=0.287 Sum_probs=120.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~- 253 (357)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ .|..
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPV 156 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCC
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCc
Confidence 45666666 6677899999999999999999986 568999998 7888777642 469999999865 2344
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCC----chh-hhhhhhhhhhhhhcCCCccCCHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVS----SSA-RETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
|+|++..++||+++++...+|+++.++|||||++++.+...+...... ... ......+......++++..++.++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 236 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM 236 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHH
Confidence 999999999999888889999999999999999999988765421000 000 000011221112234677889999
Q ss_pred HHHHHHHcCCceeEEeec
Q 018366 329 FTELAIAAGFKHINFASC 346 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~ 346 (357)
+.++++++||+++++...
T Consensus 237 ~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 237 MVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHhCCCEEEEEEec
Confidence 999999999999887654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=147.77 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=117.6
Q ss_pred CCCCceEEEEcCCcchHHHHHH-hhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC-CEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-DAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D~i~~~~ 260 (357)
+.+..+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999986 6788999999999 8888777642 359999999988 55544 9999999
Q ss_pred ccccCChh-HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCch-h--hh----hhhhhhhhhhh-cCC-CccCCHHHHH
Q 018366 261 ILHCWDDD-HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSS-A--RE----TSLLDVLLMTR-DGG-GRERTKKEFT 330 (357)
Q Consensus 261 ~lh~~~~~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~-~--~~----~~~~~~~~~~~-~~~-~~~~t~~e~~ 330 (357)
++||+++. ....+|++++++|||||++++.+...+........ . .. .......+... ..+ ...++.+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 99999654 44579999999999999999988765432211100 0 00 00000111111 101 1447999999
Q ss_pred HHHHHcCCceeEEeecCCce-eEEEEeC
Q 018366 331 ELAIAAGFKHINFASCVCNL-YIMEFFK 357 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~~~~~-~vie~~~ 357 (357)
++|+++||+++++....... ..+.++|
T Consensus 276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999998755443 3555543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=141.02 Aligned_cols=137 Identities=17% Similarity=0.107 Sum_probs=110.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCC-CCCCC--CEEEeccccccCChhH
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDH 269 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~ 269 (357)
..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+.+ |+|++.+++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 579999999999999999998 458899998 888888776 4689999999987 55543 9999999999998788
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
...+|++++++|||||++++.+...+... .+.. . ......++.+++.++|+++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~~~~-------~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE------PMYH-------P-VATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE------EECC-------S-SSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh------hhhc-------h-hhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 89999999999999999999886543310 0000 0 013345789999999999999999987665
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-17 Score=136.22 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=115.5
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCCCCCCC--CEEEecc
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFDSVPEG--DAILMKW 260 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~p~~--D~i~~~~ 260 (357)
+++.++ ..+..+|||+|||+|.++..+++... +++++|+ +.+++.+++ .+++++..+| .+++.+ |+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 444455 56678999999999999999999874 8899998 778877765 4789999999 444443 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCce
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKH 340 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 340 (357)
++|+++ +...+|+++++.|||||++++.+.........+. ....++.+++.++|+ ||++
T Consensus 84 ~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 84 SFHDMD--DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPP-----------------LSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp CSTTCS--CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC-----------------GGGCCCHHHHHHHTT--TEEE
T ss_pred chhccc--CHHHHHHHHHHhcCCCCEEEEEEcCccccccCch-----------------HhhhcCHHHHHHHHh--CcEE
Confidence 999995 4579999999999999999999876544221110 122368999999999 9999
Q ss_pred eEEeecCCceeEEEEe
Q 018366 341 INFASCVCNLYIMEFF 356 (357)
Q Consensus 341 ~~~~~~~~~~~vie~~ 356 (357)
++........+.+.+.
T Consensus 143 ~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 143 EKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEECSSTTEEEEEEE
T ss_pred EEccCCCCceEEEEEe
Confidence 9999988777766654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-17 Score=142.22 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=105.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCCCCCCC--CEEEeccccccCCh
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFDSVPEG--DAILMKWILHCWDD 267 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~~~p~~--D~i~~~~~lh~~~~ 267 (357)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+..+++ |+|++.++|||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567899999999999999999876 5788887 7888777653 27999999998754443 99999999999964
Q ss_pred hHHHHHHHHHH-HhCCCCCEEEEEeeccCCCCCCCchhhhhhhhh-------hh-hhhhcCCCccCCHHHHHHHHHHcCC
Q 018366 268 DHCLRILKNCY-KAIPDNGKVIVMNSIVPEIPEVSSSARETSLLD-------VL-LMTRDGGGRERTKKEFTELAIAAGF 338 (357)
Q Consensus 268 ~~~~~~L~~~~-~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~t~~e~~~ll~~aGf 338 (357)
...+|++++ ++|||||++++.++..... ......... +. ......+...++.+++.++|+++||
T Consensus 119 --~~~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 119 --PVALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp --HHHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCC
Confidence 479999999 9999999999987643210 000000000 00 0001124456899999999999999
Q ss_pred ceeEEee
Q 018366 339 KHINFAS 345 (357)
Q Consensus 339 ~~~~~~~ 345 (357)
+++++..
T Consensus 192 ~~~~~~~ 198 (250)
T 2p7i_A 192 QVTYRSG 198 (250)
T ss_dssp EEEEEEE
T ss_pred eEEEEee
Confidence 9988754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=139.27 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=108.7
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC-CEEEeccccccCChh
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG-DAILMKWILHCWDDD 268 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~~~~ 268 (357)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+ +.+.. |+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 345679999999999999999987 568999998 8888887765578888999877 42233 999999999999988
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC-CceeEEeec
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG-FKHINFASC 346 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~~ 346 (357)
+...+|++++++|||||++++......... .. .. ......++.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----~~----~~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEG----RD----KL-------ARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCE----EC----TT-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccc----cc----cc-------chhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 899999999999999999999765432210 00 00 01123468999999999999 999988654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-17 Score=144.74 Aligned_cols=161 Identities=14% Similarity=0.177 Sum_probs=114.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D 254 (357)
.+++.+....+..+|||||||+|.++..+++.+|+ .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 44544433567789999999999999999999985 89999998 7777766542 379999999988 55544 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc-----C---CCCCCCchhhhhhhhhhhhhh-hcCCCccCC
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV-----P---EIPEVSSSARETSLLDVLLMT-RDGGGRERT 325 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~-----~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t 325 (357)
+|++..++|++++ ...+|++++++|||||++++.++.. . ++...+.......+....... ...+....+
T Consensus 92 ~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (284)
T 3gu3_A 92 IAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 169 (284)
T ss_dssp EEEEESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred EEEECChhhcCCC--HHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence 9999999999954 4699999999999999999998751 1 101000000011111111100 012455667
Q ss_pred HHHHHHHHHHcCCceeEEeec
Q 018366 326 KKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~ 346 (357)
..++.++|+++||+.+++...
T Consensus 170 ~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 170 GMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp GGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEc
Confidence 789999999999999877443
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-17 Score=138.31 Aligned_cols=141 Identities=11% Similarity=0.108 Sum_probs=107.2
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------------------CCceEEEc
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------AGVEHVGG 244 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~v~~~~~ 244 (357)
.++..+. ..+..+|||+|||+|..+..+++. +.+++++|+ +.+++.+++. .+++++.+
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 4445454 456789999999999999999997 468999998 8888877542 47999999
Q ss_pred CCCC-CCCC--C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC
Q 018366 245 NMFD-SVPE--G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG 320 (357)
Q Consensus 245 D~~~-~~p~--~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
|+.+ +.+. . |+|++..++|++++++..+++++++++|||||+++++....+... . ...
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~---------------~---~~~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL---------------L---EGP 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS---------------S---SSC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc---------------c---CCC
Confidence 9988 4432 3 999999999999988888999999999999999665544332110 0 001
Q ss_pred CccCCHHHHHHHHHHcCCceeEEeec
Q 018366 321 GRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
....+.+++.+++++ ||+++.+...
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 122589999999998 9998776554
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-17 Score=141.24 Aligned_cols=163 Identities=16% Similarity=0.156 Sum_probs=115.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC-CEEEe-ccccccCCh
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG-DAILM-KWILHCWDD 267 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~-D~i~~-~~~lh~~~~ 267 (357)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 3567999999999999999999876 7888898 8888887653 679999999987 44444 99995 559999854
Q ss_pred -hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCch-hh-------------------hhhhhhhhhhhhcCC------
Q 018366 268 -DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSS-AR-------------------ETSLLDVLLMTRDGG------ 320 (357)
Q Consensus 268 -~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~------ 320 (357)
++...+|++++++|||||++++.+...++....... .. ......+.+.....+
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 677899999999999999999977654432100000 00 000000101100001
Q ss_pred -----CccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 321 -----GRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 321 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.+.+|.++|.++|+++||+++.+....+...++.++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 1356999999999999998777766556667777764
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=140.36 Aligned_cols=150 Identities=17% Similarity=0.277 Sum_probs=113.1
Q ss_pred HHHhhcccCCCCceEEEEcCCc---chHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCCC------
Q 018366 184 RILEHYEGFQNVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFDS------ 249 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~------ 249 (357)
.+++.+....+..+|||||||+ |.++..+.+.+|+.+++++|+ |.|++.+++ .++++++.+|+.++
T Consensus 67 ~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~ 146 (274)
T 2qe6_A 67 RGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNH 146 (274)
T ss_dssp HHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHS
T ss_pred HHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhcc
Confidence 3444443123457999999999 999888888899999999999 889888765 26899999999762
Q ss_pred ------CC--CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCC
Q 018366 250 ------VP--EGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGG 321 (357)
Q Consensus 250 ------~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (357)
++ ..|+|++..+|||+++++...+|++++++|||||+|++.+...+. ... .....+.+..... ..
T Consensus 147 ~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~---~~~~~~~~~~~~~-~~ 219 (274)
T 2qe6_A 147 PDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPA---QQKLARITRENLG-EG 219 (274)
T ss_dssp HHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHH---HHHHHHHHHHHHS-CC
T ss_pred chhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHH---HHHHHHHHHhcCC-CC
Confidence 22 239999999999999888899999999999999999999976532 111 1112222222212 45
Q ss_pred ccCCHHHHHHHHHHcCCceeE
Q 018366 322 RERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 322 ~~~t~~e~~~ll~~aGf~~~~ 342 (357)
..+|.+++.++| +||++++
T Consensus 220 ~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 220 WARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp CCBCHHHHHHTT--TTCEECT
T ss_pred ccCCHHHHHHHh--CCCeEcc
Confidence 678999999999 5998775
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=136.94 Aligned_cols=141 Identities=20% Similarity=0.226 Sum_probs=108.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CEEEeccccccCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DAILMKWILHCWD 266 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~ 266 (357)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++.+++||++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 5679999999999999999998 568899998 7888877654 679999999988 56544 9999999999994
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
+...+|++++++|+|||++++.+....... ... .... .... ......++.+++.++++++||++++....
T Consensus 131 --~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~---~~~---~~~~-~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 131 --EPLRALNEIKRVLKSDGYACIAILGPTAKP---REN---SYPR-LYGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEECTTCGG---GGG---GGGG-GGTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --CHHHHHHHHHHHhCCCeEEEEEEcCCcchh---hhh---hhhh-hccc-cccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 456899999999999999999886443211 001 1111 1111 11345579999999999999999987643
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-17 Score=145.06 Aligned_cols=173 Identities=9% Similarity=0.099 Sum_probs=119.1
Q ss_pred hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcCCCC-
Q 018366 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFD- 248 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~- 248 (357)
.....+++.++ . +..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+
T Consensus 70 ~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (299)
T 3g2m_A 70 SEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 (299)
T ss_dssp HHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred HHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence 34456666665 3 3349999999999999999988 467899998 8888877652 579999999998
Q ss_pred CCCCC-CEEEec-cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCC--Cchhhhh--------hh-------
Q 018366 249 SVPEG-DAILMK-WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEV--SSSARET--------SL------- 309 (357)
Q Consensus 249 ~~p~~-D~i~~~-~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~--~~~~~~~--------~~------- 309 (357)
+.+.. |+|++. .++|++++++...+|++++++|||||+|++.....+..... .....+. ..
T Consensus 146 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 55544 988864 77888887788999999999999999999977654321000 0000000 00
Q ss_pred --hhhhhhh----------hcCCCccCCHHHHHHHHHHcCCceeEEeecC------CceeEEEEe
Q 018366 310 --LDVLLMT----------RDGGGRERTKKEFTELAIAAGFKHINFASCV------CNLYIMEFF 356 (357)
Q Consensus 310 --~~~~~~~----------~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~ 356 (357)
..+.+.. .....+.+|.+++.++|+++||+++++.+.. ....++|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 0000000 0001224699999999999999999998775 224577664
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-17 Score=142.94 Aligned_cols=138 Identities=17% Similarity=0.268 Sum_probs=110.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG--DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~--D~i~~~~~lh 263 (357)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 56899999999999999999887 558999998 7888777642 248899999877 45543 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEE
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINF 343 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 343 (357)
|+++++...+|++++++|||||++++.+...... . .++ . ..+...++.++|.++|+++||++++.
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~----~-~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILD----D-VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEE----T-TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eec----c-cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998888899999999999999999998866431 0 000 0 01333468999999999999999988
Q ss_pred eecC
Q 018366 344 ASCV 347 (357)
Q Consensus 344 ~~~~ 347 (357)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=135.52 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=107.2
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcCCCC-CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFD-SV 250 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~ 250 (357)
.+.+.+. ..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. .+++++.+|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 20 TVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 3444444 34567999999999999999999998889999998 7888877652 179999999865 33
Q ss_pred CC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 251 PE-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 251 p~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
+. . |+|++..++||+++++..++|++++++|||||.+++..... .+.... ......... ......++.++
T Consensus 99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~-~~~~~~------~~~~~~~~~-~~~~~~~~~~~ 170 (219)
T 3jwg_A 99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKE-YNFHYG------NLFEGNLRH-RDHRFEWTRKE 170 (219)
T ss_dssp GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGG-GGGCCC------CT-----GG-GCCTTSBCHHH
T ss_pred ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchh-hhhhhc------ccCcccccc-cCceeeecHHH
Confidence 33 3 99999999999988888999999999999999666544321 110000 000000111 11334468999
Q ss_pred HH----HHHHHcCCceeEE
Q 018366 329 FT----ELAIAAGFKHINF 343 (357)
Q Consensus 329 ~~----~ll~~aGf~~~~~ 343 (357)
+. ++++++||++...
T Consensus 171 l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 171 FQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHCCcEEEEE
Confidence 98 7889999976443
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-15 Score=139.59 Aligned_cols=215 Identities=10% Similarity=0.006 Sum_probs=140.4
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCCCCCchhhhhhc
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMAL 124 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~ 124 (357)
|+|..| + +|.|+.+||.++++ +++.+++||+.|.+.|+++. + ++ |++++.+..++...+..+..+.+..
T Consensus 47 ~ll~~L-~-~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~---~-~~-~~lt~~~~~~l~~~~~~~~~~~~~~ 115 (373)
T 2qm3_A 47 NVLSAV-L-ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTF---E-DG-VKLTEKGEELVAEYGIGKRYDFTCP 115 (373)
T ss_dssp HHHHHH-H-HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC---S-SS-SEECHHHHHHHHHHTCCCCCC----
T ss_pred HHHHHh-c-CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEE---C-CC-EEECHHHHHHHHhcCccccccccch
Confidence 789999 5 48999999999999 99999999999999999985 2 24 9999987755543221111111100
Q ss_pred c------CChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCCCceE
Q 018366 125 P------LDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERL 198 (357)
Q Consensus 125 ~------~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v 198 (357)
. ....+...|..+.+.++....+. ..++. ....+ ........ .... .. ..+..+|
T Consensus 116 ~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~-----~~~~~--~~~~~~~l---------~~~~-~~-~~~~~~V 176 (373)
T 2qm3_A 116 HCQGKTVDLQAFADLLEQFREIVKDRPEPL-HEFDQ-----AYVTP--ETTVARVI---------LMHT-RG-DLENKDI 176 (373)
T ss_dssp --------CGGGHHHHHHHHHHHTTCCCCC-GGGTC-----CCBCH--HHHHHHHH---------HHHH-TT-CSTTCEE
T ss_pred hhcCCCcchhhhHHHHHHHHHHHhcCCccc-hhcCC-----eecCH--HHHHHHHH---------HHhh-cC-CCCCCEE
Confidence 0 00111224455666665432221 11110 00011 11111100 0111 11 2245799
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC----C-CEEEeccccccCC
Q 018366 199 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE----G-DAILMKWILHCWD 266 (357)
Q Consensus 199 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~----~-D~i~~~~~lh~~~ 266 (357)
||+| |+|.++..++...|+.+++++|+ +.+++.+++. .+++++.+|+.+++|. . |+|++...++..
T Consensus 177 LDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~- 254 (373)
T 2qm3_A 177 FVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE- 254 (373)
T ss_dssp EEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-
T ss_pred EEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchH-
Confidence 9999 99999999999988889999999 8888887653 3799999999885442 3 999998877654
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
....+|+++.++|||||++++++..
T Consensus 255 --~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 255 --AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp --HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred --HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 3579999999999999976555543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=138.48 Aligned_cols=132 Identities=17% Similarity=0.216 Sum_probs=106.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEecccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKWILHC 264 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~~lh~ 264 (357)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999876 5678999998 7788777542 3599999999884344 3 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
+++++...+|++++++|||||++++.+......... ....++.+++.++|+++||+++++.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence 998889999999999999999999988654321110 1122589999999999999999887
Q ss_pred ecC
Q 018366 345 SCV 347 (357)
Q Consensus 345 ~~~ 347 (357)
...
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=135.78 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=106.5
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcCCCC-CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFD-SV 250 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~ 250 (357)
.+.+.++ ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. .+++++.+|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (217)
T 3jwh_A 20 GVVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK 98 (217)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG
T ss_pred HHHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc
Confidence 3444444 34567999999999999999999988889999998 7888777542 279999999865 33
Q ss_pred CC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 251 PE-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 251 p~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
+. . |+|++..++||+++++...+|++++++|||||.+++....... ..+.......+.. ......++.++
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~ 170 (217)
T 3jwh_A 99 RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-------VKFANLPAGKLRH-KDHRFEWTRSQ 170 (217)
T ss_dssp GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-------HHTC------------CCSCBCHHH
T ss_pred cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-------hhhcccccccccc-cccccccCHHH
Confidence 32 3 9999999999998888899999999999999977765542100 0000000000110 11334468999
Q ss_pred HH----HHHHHcCCceeE
Q 018366 329 FT----ELAIAAGFKHIN 342 (357)
Q Consensus 329 ~~----~ll~~aGf~~~~ 342 (357)
+. ++++++||+++.
T Consensus 171 l~~~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 171 FQNWANKITERFAYNVQF 188 (217)
T ss_dssp HHHHHHHHHHHSSEEEEE
T ss_pred HHHHHHHHHHHcCceEEE
Confidence 98 888999998644
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=148.03 Aligned_cols=144 Identities=18% Similarity=0.301 Sum_probs=111.3
Q ss_pred CCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC--------------CCceEEEcCCCC-------C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFD-------S 249 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~-------~ 249 (357)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 356799999999999999999987 7889999999 8888877653 589999999987 4
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 250 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 250 ~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
++.+ |+|++..++|++++ ...+|++++++|||||+|++.+...+..... .. ......... .....++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~----~~--~~~~~~~~~-~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSE----AA--QQDPILYGE-CLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCH----HH--HHCHHHHHT-TCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCH----hH--hhhHHHhhc-ccccCCCHH
Confidence 5544 99999999999954 5799999999999999999998766532110 00 111111111 134567899
Q ss_pred HHHHHHHHcCCceeEEee
Q 018366 328 EFTELAIAAGFKHINFAS 345 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~ 345 (357)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999886644
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=135.69 Aligned_cols=148 Identities=19% Similarity=0.174 Sum_probs=107.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcCCCC-CCCCC--CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFD-SVPEG--DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~p~~--D~i~ 257 (357)
++..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .++++..+|+.+ +++.+ |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 35679999999999999999998 568999998 7777766541 247899999987 55543 9999
Q ss_pred eccccccCChh-HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhc--------------CCCc
Q 018366 258 MKWILHCWDDD-HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD--------------GGGR 322 (357)
Q Consensus 258 ~~~~lh~~~~~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 322 (357)
+..++|++++. ....+|++++++|||||++++.+....... . ................ ....
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--K-LYRKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--H-HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--H-HHHHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 99999999754 466999999999999999999987653311 0 0000000111110000 0123
Q ss_pred cCCHHHHHHHHHHcCCceeEEee
Q 018366 323 ERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
.++.++|.++|+++||+++++..
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEe
Confidence 57999999999999999998754
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-16 Score=136.06 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=109.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CEE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DAI 256 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~i 256 (357)
.+...++ ..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 4555555 45668999999999999999998743 28899998 7888777653 469999999987 55543 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC--CCCCCCch--------hhhhhhh-----hhhhhhhcCCC
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP--EIPEVSSS--------ARETSLL-----DVLLMTRDGGG 321 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~--~~~~~~~~--------~~~~~~~-----~~~~~~~~~~~ 321 (357)
++..++||++ +...+|++++++|||||++++...... ........ ......+ ...+.......
T Consensus 112 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 112 YSSLALHYVE--DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEeccccccc--hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 9999999995 567999999999999999999774311 00000000 0000000 00000001122
Q ss_pred ccCCHHHHHHHHHHcCCceeEEeec
Q 018366 322 RERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 322 ~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
..+|.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3468999999999999999988654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=140.08 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=112.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC-CEEEe
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG-DAILM 258 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~-D~i~~ 258 (357)
..+++.++ ..+..+|||||||+|.++..+++ +..+++++|+ +.+++.+++. +++.+..+|+.+ +.+.. |+|++
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 34556565 55678999999999999999998 6789999998 8888877653 689999999987 55444 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh------hcCCCccCCHHHHHHH
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT------RDGGGRERTKKEFTEL 332 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~t~~e~~~l 332 (357)
..++|+++ +...+|++++++|||||++++........ .............. .......++.+++.++
T Consensus 124 ~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (279)
T 3ccf_A 124 NAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGGKGNI-----KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNI 196 (279)
T ss_dssp ESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECTTTT-----HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHH
T ss_pred cchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecCCcch-----HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHH
Confidence 99999995 45689999999999999999976543220 01111111110000 0001245689999999
Q ss_pred HHHcCCceeEEeec
Q 018366 333 AIAAGFKHINFASC 346 (357)
Q Consensus 333 l~~aGf~~~~~~~~ 346 (357)
|+++||+++++...
T Consensus 197 l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 197 LEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHTEEEEEEEEE
T ss_pred HHHcCCEEEEEEEe
Confidence 99999999876543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-16 Score=136.85 Aligned_cols=161 Identities=11% Similarity=0.086 Sum_probs=112.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hH------HHHhCCCC-------CCceEEEcC-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH------VVQDAPSY-------AGVEHVGGN-M 246 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~~-------~~v~~~~~D-~ 246 (357)
..+++.++ ..+..+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++. ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35666666 6677899999999999999999995 7789999998 43 66665542 479999998 4
Q ss_pred CC---CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh----
Q 018366 247 FD---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR---- 317 (357)
Q Consensus 247 ~~---~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~---- 317 (357)
.. +++.+ |+|++..++||+++.. .+++.++++++|||++++.+...+..................+...
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 43 33433 9999999999997654 5788888888889999999987654321110000000111011000
Q ss_pred -cCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 318 -DGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 318 -~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
......++.+++.++++++||++++....
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00124679999999999999999887655
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-16 Score=139.54 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=110.8
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCCCCCCC--CEEEe
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFDSVPEG--DAILM 258 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~p~~--D~i~~ 258 (357)
..+++.++ ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+..+.+ |+|++
T Consensus 23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 101 (259)
T 2p35_A 23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA 101 (259)
T ss_dssp HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence 35666665 55678999999999999999999999899999998 888887765 368999999998722443 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhh--hhhhh----cCCCccCCHHHHHHH
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDV--LLMTR----DGGGRERTKKEFTEL 332 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~t~~e~~~l 332 (357)
..++|+++ +...+|++++++|||||++++.++..... +........... +.... ......++.++|.++
T Consensus 102 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 102 NAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp ESCGGGST--THHHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred eCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 99999994 56799999999999999999987532211 000000000000 00000 013356799999999
Q ss_pred HHHcCCce
Q 018366 333 AIAAGFKH 340 (357)
Q Consensus 333 l~~aGf~~ 340 (357)
|+++||++
T Consensus 177 l~~aGf~v 184 (259)
T 2p35_A 177 LSPKSSRV 184 (259)
T ss_dssp HGGGEEEE
T ss_pred HHhcCCce
Confidence 99999974
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-16 Score=136.89 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=110.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CEE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DAI 256 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~i 256 (357)
.+.+.++ ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 4555555 446789999999999999999998765 8999998 7788777653 679999999987 66543 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC--C--------CCCCc-hhhhhhhhhh-----hhhhhcCC
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE--I--------PEVSS-SARETSLLDV-----LLMTRDGG 320 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~--~--------~~~~~-~~~~~~~~~~-----~~~~~~~~ 320 (357)
++..++|++ ++...+|++++++|||||++++....... . ..... .......++. .+......
T Consensus 113 ~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhh--hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 999999999 55679999999999999999997542110 0 00000 0000000000 00000001
Q ss_pred CccCCHHHHHHHHHHcCCceeEEeec
Q 018366 321 GRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
...+|.++|.++|+++||+++++...
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 12249999999999999999988754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-16 Score=139.21 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=111.1
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-C-CCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-S-VPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~p~ 252 (357)
..++..++ . ++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ + ++.
T Consensus 59 ~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34555555 2 3579999999999999999988 568999998 7888877652 578999999987 3 344
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh-------hcCCCcc
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT-------RDGGGRE 323 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 323 (357)
+ |+|++..++||+++ ...+|++++++|||||++++.+....... ........+...... .......
T Consensus 135 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVAD--PRSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccC--HHHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCC
Confidence 3 99999999999954 47899999999999999999876432100 000000000000000 0012355
Q ss_pred CCHHHHHHHHHHcCCceeEEeecC
Q 018366 324 RTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 324 ~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
++.+++.++|+++||+++++....
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCHHHHHHHHHHCCCceeeeeeEE
Confidence 799999999999999999887653
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8.3e-16 Score=135.80 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=103.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCC-CCCCC--CEEEecccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFD-SVPEG--DAILMKWIL 262 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~-~~p~~--D~i~~~~~l 262 (357)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .+++.++.+|+.+ +++.+ |+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 468899998 777776654 2679999999977 55554 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcC---CCccCCHHHHHHHHHHcCCc
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDG---GGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~e~~~ll~~aGf~ 339 (357)
|+++ +...+|++++++|||||++++. ...++ ..........+..+....... ....++.+++.++|+++||+
T Consensus 115 ~~~~--~~~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVP--DWPKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCT--THHHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcC--CHHHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 9995 4578999999999999999987 21111 011000011111111110000 12346789999999999999
Q ss_pred eeEEe
Q 018366 340 HINFA 344 (357)
Q Consensus 340 ~~~~~ 344 (357)
++.+.
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 77653
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=131.65 Aligned_cols=137 Identities=21% Similarity=0.180 Sum_probs=101.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhHH
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHC 270 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~ 270 (357)
..+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +.+.+ |+|++.+++|+++ +.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~ 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVD--DP 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS--CH
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhcc--CH
Confidence 679999999999999988765 78887 7888877765 79999999877 55543 9999999999995 45
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 271 LRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 271 ~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
..+|++++++|+|||++++.+..... .......... ...........++.+++.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNK-EKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTT-TC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHh-cCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 78999999999999999998764321 1110000000 0000011345579999999999999999887654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-16 Score=134.16 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=81.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CEEEecc-cccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DAILMKW-ILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~i~~~~-~lh~ 264 (357)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5679999999999999999988 457999998 7888877653 279999999987 55544 9999998 9999
Q ss_pred CC-hhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 265 WD-DDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 265 ~~-~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
++ +++..++|++++++|||||++++..
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 84 4678899999999999999999843
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-16 Score=141.99 Aligned_cols=145 Identities=15% Similarity=0.251 Sum_probs=104.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------------------------------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------------------------ 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------------------ 236 (357)
...+|||||||+|.++..+++.++..+++++|+ +.+++.+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 567999999999999999999999999999999 7777766542
Q ss_pred ----------------------------CCceEEEcCCCCCC------CC-C-CEEEeccccccC----ChhHHHHHHHH
Q 018366 237 ----------------------------AGVEHVGGNMFDSV------PE-G-DAILMKWILHCW----DDDHCLRILKN 276 (357)
Q Consensus 237 ----------------------------~~v~~~~~D~~~~~------p~-~-D~i~~~~~lh~~----~~~~~~~~L~~ 276 (357)
.+|+|+.+|+.... +. . |+|++..+++++ +++...++|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998632 33 3 999999999765 67788999999
Q ss_pred HHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH--cCCceeEEeec
Q 018366 277 CYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIA--AGFKHINFASC 346 (357)
Q Consensus 277 ~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 346 (357)
++++|||||+|++....+.... ........... .. ......++++.++|.+ +||+.++++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~------~~~~~~~~~~~-~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYG------KRKTLTETIYK-NY-YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHH------TTTTSCHHHHH-HH-HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhh------hhhcccHHHHh-hh-hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 9999999999998543221100 00000000000 01 1122357899999999 99998887654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=126.93 Aligned_cols=142 Identities=11% Similarity=0.136 Sum_probs=110.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-D 254 (357)
.+++.++ ..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 4455555 445679999999999999999987 568999998 7788776642 479999999887 44444 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++..++|++++++...+|++++++|||||++++++.........+ ......++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 99999999999888889999999999999999999887654321100 01233468899999998
Q ss_pred HcCCceeEEeec
Q 018366 335 AAGFKHINFASC 346 (357)
Q Consensus 335 ~aGf~~~~~~~~ 346 (357)
+ |++++....
T Consensus 164 ~--f~~~~~~~~ 173 (199)
T 2xvm_A 164 G--WERVKYNED 173 (199)
T ss_dssp T--SEEEEEECC
T ss_pred C--CeEEEeccc
Confidence 6 998887543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-16 Score=134.88 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=109.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCC-----CCCC--CE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDS-----VPEG--DA 255 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-----~p~~--D~ 255 (357)
.++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. .+.. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4555555 345589999999999999999988 568999998 88888888777888988887651 2222 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhc-----CCCccCCHHHHH
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD-----GGGRERTKKEFT 330 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~t~~e~~ 330 (357)
|++..++| . ++...+|++++++|||||++++.+............. .+......... .....+|.++|.
T Consensus 120 v~~~~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQD---GWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSC---EEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccccCcccccc---ccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 5 4557999999999999999999887543322110000 00000000000 012346999999
Q ss_pred HHHHHcCCceeEEee
Q 018366 331 ELAIAAGFKHINFAS 345 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~ 345 (357)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999998865
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=128.96 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=102.4
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEe
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILM 258 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~ 258 (357)
...+++.+....+..+|||||||+|.++..+. .+++++|+.+. ++.++.+|+.+ +++.+ |+|++
T Consensus 55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 55 VDRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEE
Confidence 33455555434456799999999999998873 57888887332 57889999987 56544 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGF 338 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 338 (357)
..++|+ ++...+|++++++|+|||++++.+.... ..+.+++.++++++||
T Consensus 122 ~~~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf 171 (215)
T 2zfu_A 122 CLSLMG---TNIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGF 171 (215)
T ss_dssp ESCCCS---SCHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTE
T ss_pred ehhccc---cCHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCC
Confidence 999984 4567999999999999999999874310 1278999999999999
Q ss_pred ceeEEeecCCceeEEEEeC
Q 018366 339 KHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 339 ~~~~~~~~~~~~~vie~~~ 357 (357)
++++.....+...++.++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 172 KIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEEECCSTTCEEEEEEE
T ss_pred EEEEEecCCCeEEEEEEEe
Confidence 9988766666666666654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=121.41 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=107.2
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC--CEEEe
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG--DAILM 258 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~i~~ 258 (357)
.++..+. ++..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+ |+|++
T Consensus 38 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAMA--PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHHS--CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHhc--cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 4555443 46679999999999999999987 568899998 7787777653 579999999988 56543 99999
Q ss_pred c-cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 259 K-WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 259 ~-~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
. .++|++++++...+|+++++.|+|||++++..... ..++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 89999988888999999999999999999865321 1257889999999999
Q ss_pred CceeEEeec
Q 018366 338 FKHINFASC 346 (357)
Q Consensus 338 f~~~~~~~~ 346 (357)
|++++....
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999887544
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=133.49 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=85.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDH 269 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~ 269 (357)
...+|||||||+|.++..+++.+ .+++++|+ +.|++.+++.++++++.+|+.+ +++++ |+|++..++|+++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-- 114 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL-- 114 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH--
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH--
Confidence 45699999999999999999886 46888998 8899999988999999999988 77765 99999999998753
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
.+++++++++|||||+|+++....+
T Consensus 115 -~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 -DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 4789999999999999999886543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=9e-16 Score=134.28 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=106.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---CCCceEEEcCCCC-CCCC-------CCEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---YAGVEHVGGNMFD-SVPE-------GDAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~D~~~-~~p~-------~D~i~~~ 259 (357)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 34667999999999999999999987 7888888 788877754 2479999999987 3221 3899999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhh-------hhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARE-------TSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.++|++++++...+|++++++|||||++++++...+... ..... .......+.. ......++.+++.++
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 207 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEH-GIRPGIFTAEDIELY 207 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTT-TCCCCCCCHHHHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhcccc-CCCCCccCHHHHHHH
Confidence 999999988899999999999999999999998643210 00000 0000001110 011223689999999
Q ss_pred HHHcCCceeEEe
Q 018366 333 AIAAGFKHINFA 344 (357)
Q Consensus 333 l~~aGf~~~~~~ 344 (357)
| +||+++...
T Consensus 208 ~--aGf~~~~~~ 217 (245)
T 3ggd_A 208 F--PDFEILSQG 217 (245)
T ss_dssp C--TTEEEEEEE
T ss_pred h--CCCEEEecc
Confidence 9 999998753
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-16 Score=132.30 Aligned_cols=151 Identities=7% Similarity=-0.030 Sum_probs=106.6
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC--CEEEecccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG--DAILMKWIL 262 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~--D~i~~~~~l 262 (357)
..+..+|||+|||+|..+..++.. ++.+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 345679999999999985555444 5678999998 7888777642 578999999987 66543 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
||++.++...+|++++++|||||++++.+...++.............+.............++.+++.++|.++||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 99988889999999999999999999998876542211000000000000000000012457999999999999987765
Q ss_pred E
Q 018366 343 F 343 (357)
Q Consensus 343 ~ 343 (357)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-15 Score=127.66 Aligned_cols=101 Identities=22% Similarity=0.355 Sum_probs=82.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DA 255 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~ 255 (357)
.+.+.++ +..+|||+|||+|.++..+++. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 26 ~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 99 (243)
T 3d2l_A 26 WVLEQVE---PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDA 99 (243)
T ss_dssp HHHHHSC---TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEE
T ss_pred HHHHHcC---CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCE
Confidence 3444443 4579999999999999999887 68999998 8888877652 579999999887 55544 99
Q ss_pred EEecc-ccccC-ChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 256 ILMKW-ILHCW-DDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 256 i~~~~-~lh~~-~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
|++.. ++||+ +.++...+|++++++|||||++++.
T Consensus 100 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 100 ITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99986 99998 5567889999999999999999874
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=128.50 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=109.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC---CCCCC--CEE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD---SVPEG--DAI 256 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~p~~--D~i 256 (357)
..+++.++ .+..+|||+|||+|.++..+++. + .+++++|+ +.+++.+++.. .++..+|+.+ +++.+ |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 45666554 45679999999999999999988 4 78999998 77888776532 4788899875 34433 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh-hhhhh-----hhcCCCccCCHHHHH
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL-DVLLM-----TRDGGGRERTKKEFT 330 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~t~~e~~ 330 (357)
++.+++||+++. ..+|+++++.|+|||++++..+..... ....... ..+.. ....+...++.++|.
T Consensus 98 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (230)
T 3cc8_A 98 IFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEML 169 (230)
T ss_dssp EEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH------HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHH
T ss_pred EECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH------HHHHHHhcCCceeccCCCCCcceEEEecHHHHH
Confidence 999999999654 699999999999999999987543210 0000000 00000 000123557999999
Q ss_pred HHHHHcCCceeEEeecC
Q 018366 331 ELAIAAGFKHINFASCV 347 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~~ 347 (357)
++|+++||+++++....
T Consensus 170 ~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 170 RMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHTTEEEEEEEEEE
T ss_pred HHHHHcCCeEEEEEecc
Confidence 99999999998886643
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-15 Score=133.13 Aligned_cols=163 Identities=16% Similarity=0.194 Sum_probs=109.9
Q ss_pred HHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC--------CCC
Q 018366 169 TYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--------YAG 238 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~ 238 (357)
.|.+....+.......+..... .+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ .++
T Consensus 13 ~y~~~rp~y~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 90 (299)
T 3g5t_A 13 RYSSSRPSYPSDFYKMIDEYHD--GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90 (299)
T ss_dssp HHHHHSCCCCHHHHHHHHHHCC--SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTT
T ss_pred HHhhcCCCCCHHHHHHHHHHhc--CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCc
Confidence 3444333333333444444333 467899999999999999999987 8889999999 888887754 368
Q ss_pred ceEEEcCCCC-CCCC------C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhh
Q 018366 239 VEHVGGNMFD-SVPE------G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL 309 (357)
Q Consensus 239 v~~~~~D~~~-~~p~------~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~ 309 (357)
++++.+|+.+ +.+. + |+|++..++||+ +...+|++++++|||||+|++.+...+.....+. ....
T Consensus 91 v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---~~~~ 164 (299)
T 3g5t_A 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPE---FDDL 164 (299)
T ss_dssp EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGG---GTTH
T ss_pred eEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHH---HHHH
Confidence 9999999987 4444 3 999999999999 4579999999999999999996554321111111 1111
Q ss_pred hhhhhhhh-cCCCc--cCCHHHHHHHHHHcCCc
Q 018366 310 LDVLLMTR-DGGGR--ERTKKEFTELAIAAGFK 339 (357)
Q Consensus 310 ~~~~~~~~-~~~~~--~~t~~e~~~ll~~aGf~ 339 (357)
+.-..... ..+.. .+..+.+.++++++||.
T Consensus 165 ~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp 197 (299)
T 3g5t_A 165 MIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLD 197 (299)
T ss_dssp HHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCC
T ss_pred HHHhccCcccccchhhchhhHHHHHhhhccCCC
Confidence 11111000 00111 14567789999999993
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-15 Score=134.66 Aligned_cols=141 Identities=14% Similarity=0.105 Sum_probs=95.3
Q ss_pred CCCceEEEEcCCcchHHH----HHHhhCCCCeE--EEeec-hHHHHhCCCC-------CCceE--EEcCCCC-C------
Q 018366 193 QNVERLVDVGGGFGVTLS----MITSKYPQIKA--VNFDL-PHVVQDAPSY-------AGVEH--VGGNMFD-S------ 249 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~-------~~v~~--~~~D~~~-~------ 249 (357)
.+..+|||||||+|.++. .++..+|+..+ +++|. ++|++.+++. +++.+ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 345799999999997654 45566688754 99998 7888866532 24444 4444432 1
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhc--CCCccCC
Q 018366 250 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD--GGGRERT 325 (357)
Q Consensus 250 ~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~t 325 (357)
++++ |+|++.++|||++ +..++|++++++|||||++++.+...+. .. ...+........ .....++
T Consensus 131 ~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~ 200 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVSGSS-----GW---DKLWKKYGSRFPQDDLCQYIT 200 (292)
T ss_dssp TCCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEECTTS-----HH---HHHHHHHGGGSCCCTTCCCCC
T ss_pred cCCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEecCCc-----cH---HHHHHHHHHhccCCCcccCCC
Confidence 2333 9999999999995 4578999999999999999998653211 11 111111111000 0234578
Q ss_pred HHHHHHHHHHcCCceeEE
Q 018366 326 KKEFTELAIAAGFKHINF 343 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~ 343 (357)
.++|.++|+++||+.+..
T Consensus 201 ~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 999999999999998764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=127.71 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=102.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----------------------CCCceEEEcCCCC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMFD 248 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~D~~~ 248 (357)
.+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35679999999999999999987 468999999 788876632 1468999999998
Q ss_pred -CCC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccC
Q 018366 249 -SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRER 324 (357)
Q Consensus 249 -~~p--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (357)
+.+ .. |+|++..+||++++++...++++++++|||||+++++....+.... .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~------------------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH------------------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC------------------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC------------------CCCCCCC
Confidence 443 33 9999999999999888889999999999999999876654332100 0011125
Q ss_pred CHHHHHHHHHHcCCceeEEee
Q 018366 325 TKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 325 t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+.+++.++|.+ +|+++....
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 89999999987 599877644
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-14 Score=123.03 Aligned_cols=152 Identities=20% Similarity=0.298 Sum_probs=106.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCc--chHHHHHH-hhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC---
Q 018366 183 ERILEHYEGFQNVERLVDVGGGF--GVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS--- 249 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~--G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~--- 249 (357)
...++.+..-.+..+|||||||+ +.++..++ +..|+.+++++|. |.|++.+++. .++.|+.+|+.++
T Consensus 67 ~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~ 146 (277)
T 3giw_A 67 NRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASI 146 (277)
T ss_dssp HHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHH
T ss_pred HHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhh
Confidence 34444444223567999999997 44455554 4679999999999 8999988752 3689999999872
Q ss_pred C--C---CC-C-----EEEeccccccCChhH-HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh
Q 018366 250 V--P---EG-D-----AILMKWILHCWDDDH-CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR 317 (357)
Q Consensus 250 ~--p---~~-D-----~i~~~~~lh~~~~~~-~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (357)
+ | .. | .|+++.+|||+++++ ...+|++++++|+|||+|++.+...+..+ .........+...
T Consensus 147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p-----~~~~~~~~~~~~~- 220 (277)
T 3giw_A 147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP-----QEVGRVAREYAAR- 220 (277)
T ss_dssp HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH-----HHHHHHHHHHHHT-
T ss_pred hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH-----HHHHHHHHHHHhc-
Confidence 1 1 11 3 688999999998876 57999999999999999999987654211 1111122222211
Q ss_pred cCCCccCCHHHHHHHHHHcCCceeE
Q 018366 318 DGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 318 ~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
......+|.+|+.++|. ||+.++
T Consensus 221 g~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 221 NMPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp TCCCCCCCHHHHHHTTT--TSEECT
T ss_pred CCCCccCCHHHHHHHhC--CCcccC
Confidence 11345689999999995 999754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-15 Score=137.04 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=86.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----------CCceEEEcCCCC-C--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFD-S-- 249 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~-~-- 249 (357)
.+...++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .++.+..+|+.+ +
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 124 (293)
T 3thr_A 48 WLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD 124 (293)
T ss_dssp HHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred HHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence 3444444 3456799999999999999999984 48899998 7888877531 468889999877 4
Q ss_pred -CCCC--CEEEec-cccccCCh-----hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 250 -VPEG--DAILMK-WILHCWDD-----DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 250 -~p~~--D~i~~~-~~lh~~~~-----~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
++.+ |+|++. +++||+++ ++...+|++++++|||||++++..+
T Consensus 125 ~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp SCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4543 999998 89999987 6788999999999999999998765
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-13 Score=113.19 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=96.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCC--CEEEeccccccCChh--
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEG--DAILMKWILHCWDDD-- 268 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~--D~i~~~~~lh~~~~~-- 268 (357)
+..+|||+|||+|.++..+++.. +++++|+ +.+++. .++++++.+|+.++.+.+ |+|+++..+|+.++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcccc
Confidence 45699999999999999999987 8899998 778877 467999999998866543 999999888865443
Q ss_pred -----HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEE
Q 018366 269 -----HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINF 343 (357)
Q Consensus 269 -----~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 343 (357)
+...+++++.+.+ |||++++++... .+.+++.++++++||+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEE
Confidence 4567899999999 999999977421 14678889999999999887
Q ss_pred eecC
Q 018366 344 ASCV 347 (357)
Q Consensus 344 ~~~~ 347 (357)
....
T Consensus 147 ~~~~ 150 (170)
T 3q87_B 147 KVRK 150 (170)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 6654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-15 Score=138.64 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=107.4
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC------CCCC-C
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD------SVPE-G 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~------~~p~-~ 253 (357)
...+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++......+.. +++. .
T Consensus 96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCC
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCC
Confidence 456667666 566789999999999999999987 458999998 7888888764 33333322211 1222 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+|++.+++||++ +...+|++++++|||||++++..+.... ......+.... ..+...++.+++.++
T Consensus 172 fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~---------~~~~~~~~~~~-~~~~~~~s~~~l~~l 239 (416)
T 4e2x_A 172 ANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGD---------IVAKTSFDQIF-DEHFFLFSATSVQGM 239 (416)
T ss_dssp EEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHH---------HHHHTCGGGCS-TTCCEECCHHHHHHH
T ss_pred EEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHH---------hhhhcchhhhh-hhhhhcCCHHHHHHH
Confidence 9999999999995 5689999999999999999997653211 00000010000 124556899999999
Q ss_pred HHHcCCceeEEeecC
Q 018366 333 AIAAGFKHINFASCV 347 (357)
Q Consensus 333 l~~aGf~~~~~~~~~ 347 (357)
++++||+++++...+
T Consensus 240 l~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 240 AQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHTTEEEEEEEEEC
T ss_pred HHHcCCEEEEEEEcc
Confidence 999999999887754
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-15 Score=131.60 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=98.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----------------------------------
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------------------- 236 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------------------- 236 (357)
..+..+|||||||+|.++..++.... .+++++|+ +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 34567999999999988766555432 26899998 7788765431
Q ss_pred -CCce-EEEcCCCCC--CC---C-C-CEEEeccccccCC--hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhh
Q 018366 237 -AGVE-HVGGNMFDS--VP---E-G-DAILMKWILHCWD--DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSAR 305 (357)
Q Consensus 237 -~~v~-~~~~D~~~~--~p---~-~-D~i~~~~~lh~~~--~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~ 305 (357)
.++. ++.+|+.+. ++ . . |+|+++.+||+.. .++...+|++++++|||||+|++.+......
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-------- 203 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-------- 203 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc--------
Confidence 0133 889999873 22 2 2 9999999999852 3567899999999999999999987543210
Q ss_pred hhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 306 ETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
+ ... .... ....++.+++.++|+++||+++++...
T Consensus 204 ~--~~g---~~~~-~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 204 Y--MVG---KREF-SCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp E--EET---TEEE-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred c--eeC---CeEe-eccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0 000 0000 122458999999999999999887653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-13 Score=117.85 Aligned_cols=105 Identities=18% Similarity=0.333 Sum_probs=83.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DA 255 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~ 255 (357)
.++..+. ..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 4444443 345679999999999999999987 568999998 7888877642 368999999987 55544 99
Q ss_pred EEec-cccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 256 ILMK-WILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 256 i~~~-~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|++. ..+++++.++..++|++++++|||||++++..
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 9986 56777777888999999999999999998743
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-15 Score=132.67 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=107.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CC-CCC--CEEEecc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SV-PEG--DAILMKW 260 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~-p~~--D~i~~~~ 260 (357)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ ++ +.+ |+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 45679999999999999998876 4558999998 7788776642 358999999988 55 333 9999999
Q ss_pred cccc--CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCC---------CCCC---------chhh-hhhhhhhhhhhh--
Q 018366 261 ILHC--WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEI---------PEVS---------SSAR-ETSLLDVLLMTR-- 317 (357)
Q Consensus 261 ~lh~--~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~---------~~~~---------~~~~-~~~~~~~~~~~~-- 317 (357)
++|+ .+.++...+|++++++|||||++++..+..... .... .... ....+.+.....
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9998 566788899999999999999999987542110 0000 0000 000000000000
Q ss_pred cCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 318 DGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 318 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
......++.+++.++|+++||++++....
T Consensus 222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 222 NCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 00124568999999999999999988654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-14 Score=126.10 Aligned_cols=140 Identities=10% Similarity=0.135 Sum_probs=107.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DA 255 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~ 255 (357)
.+++.++ ..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 4445454 335689999999999999999988 458999998 7788776642 279999999988 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIA 335 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 335 (357)
|++..++||+++++...+|+++++.|||||+++++.....++...+ ......++.+++.++++.
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD 251 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC
Confidence 9999999999999899999999999999999888776554321110 012334578889998864
Q ss_pred cCCceeEEe
Q 018366 336 AGFKHINFA 344 (357)
Q Consensus 336 aGf~~~~~~ 344 (357)
|+++...
T Consensus 252 --~~~~~~~ 258 (286)
T 3m70_A 252 --WEFLEYN 258 (286)
T ss_dssp --SEEEEEE
T ss_pred --CEEEEEE
Confidence 8887764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=126.60 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=103.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C------------------------------
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A------------------------------ 237 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------ 237 (357)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. +
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4567999999999999999888765 57899998 7777776431 1
Q ss_pred -Cc-eEEEcCCCC--CCCC---C--CEEEeccccccCCh--hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhh
Q 018366 238 -GV-EHVGGNMFD--SVPE---G--DAILMKWILHCWDD--DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARE 306 (357)
Q Consensus 238 -~v-~~~~~D~~~--~~p~---~--D~i~~~~~lh~~~~--~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~ 306 (357)
++ .++.+|+.+ +.+. + |+|++..++|++++ ++...+|++++++|||||++++.+..... ..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-----~~--- 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-----YY--- 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-----EE---
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-----eE---
Confidence 17 899999987 2233 3 99999999994432 47789999999999999999998853321 00
Q ss_pred hhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 307 TSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
..-+ ... .....+.+++.++|+++||+++++....
T Consensus 206 -~~~~----~~~-~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 -MIGE----QKF-SSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -EETT----EEE-ECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -EcCC----ccc-cccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0000 000 1234689999999999999999886543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-14 Score=119.46 Aligned_cols=140 Identities=9% Similarity=0.068 Sum_probs=103.5
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~--D 254 (357)
.++..++ +. +|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.++.+|+.+ +++.+ |
T Consensus 23 ~~~~~~~---~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 96 (202)
T 2kw5_A 23 SVANQIP---QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWE 96 (202)
T ss_dssp HHHHHSC---SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCS
T ss_pred HHHHhCC---CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCcc
Confidence 4444443 44 9999999999999999987 468999998 7788777653 378999999987 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++. +++++.++...+|++++++|||||++++.+....... + ... .. ......++.+++.++|+
T Consensus 97 ~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~--~~~--~~--~~~~~~~~~~~l~~~l~ 161 (202)
T 2kw5_A 97 GIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------Y--NTG--GP--KDLDLLPKLETLQSELP 161 (202)
T ss_dssp EEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------G--TSC--CS--SSGGGCCCHHHHHHHCS
T ss_pred EEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc-------C--CCC--CC--CcceeecCHHHHHHHhc
Confidence 99984 3456767889999999999999999999887543210 0 000 00 00134579999999999
Q ss_pred HcCCceeEEeec
Q 018366 335 AAGFKHINFASC 346 (357)
Q Consensus 335 ~aGf~~~~~~~~ 346 (357)
||+++++...
T Consensus 162 --Gf~v~~~~~~ 171 (202)
T 2kw5_A 162 --SLNWLIANNL 171 (202)
T ss_dssp --SSCEEEEEEE
T ss_pred --CceEEEEEEE
Confidence 9999887543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=115.09 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=97.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC--C-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP--E-G 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p--~-~ 253 (357)
.++..++ ..+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++. ++++++.+|+.+..+ . .
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 4556565 66778999999999999999999999999999999 8888877652 579999999977433 2 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|++...++ +...+++++.+.|||||++++..... .+.+++.+++
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~l 155 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------------------DTLTKAVEFL 155 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------------------HHHHHHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------------------ccHHHHHHHH
Confidence 9999988776 44689999999999999999965421 0356778899
Q ss_pred HHcCC
Q 018366 334 IAAGF 338 (357)
Q Consensus 334 ~~aGf 338 (357)
+++||
T Consensus 156 ~~~g~ 160 (204)
T 3e05_A 156 EDHGY 160 (204)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 99998
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-15 Score=126.11 Aligned_cols=99 Identities=13% Similarity=0.227 Sum_probs=83.0
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCCCCCC-C-CEEEecccccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFDSVPE-G-DAILMKWILHC 264 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~p~-~-D~i~~~~~lh~ 264 (357)
..+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+..+. . |+|++..++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4566899999999999999999885 47888998 777776654 35799999999883344 3 99999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 265 WDD-DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 265 ~~~-~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+++ +...++|++++++|||||++++..+
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 986 4566899999999999999999775
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-14 Score=119.74 Aligned_cols=138 Identities=17% Similarity=0.105 Sum_probs=98.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC--CEEE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG--DAIL 257 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~i~ 257 (357)
.++..+. .+..+|||||||+|.++..+ +. +++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 3444443 25679999999999999887 44 8899998 7888877654 679999999987 66554 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
+.+++||++ +..++|++++++|||||++++.++.... ..................+...+|.++++++|+ |
T Consensus 101 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 101 LFTTLEFVE--DVERVLLEARRVLRPGGALVVGVLEALS-----PWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp EESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEECTTS-----HHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred EcChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecCCcC-----cHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 999999995 4579999999999999999998864322 111000000000000001345679999999999 7
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-13 Score=116.29 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=101.1
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhC----CCCCCceEEEcCCCC-----CCCCC-C
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFD-----SVPEG-D 254 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~-----~~p~~-D 254 (357)
++.++ +.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+ +..+++.++.+|+.+ +.+.. |
T Consensus 67 l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D 145 (230)
T 1fbn_A 67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEE
T ss_pred ccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEE
Confidence 33344 55678999999999999999999988778999998 7666543 334789999999876 22233 9
Q ss_pred EEEeccccccCChh-HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 255 AILMKWILHCWDDD-HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 255 ~i~~~~~lh~~~~~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
+|+ |++++. ....+|+++.+.|||||++++. ......+..... .....+++. +|
T Consensus 146 ~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~------------------~~~~~~~l~-~l 200 (230)
T 1fbn_A 146 VIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDP------------------KEIFKEQKE-IL 200 (230)
T ss_dssp EEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCH------------------HHHHHHHHH-HH
T ss_pred EEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCH------------------HHhhHHHHH-HH
Confidence 988 454433 3467799999999999999997 221111111000 001246777 89
Q ss_pred HHcCCceeEEeecCCc---eeEEEEe
Q 018366 334 IAAGFKHINFASCVCN---LYIMEFF 356 (357)
Q Consensus 334 ~~aGf~~~~~~~~~~~---~~vie~~ 356 (357)
+++||+.++......+ ..++.++
T Consensus 201 ~~~Gf~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 201 EAGGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp HHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred HHCCCEEEEEEccCCCccceEEEEEE
Confidence 9999999988876543 5666554
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-14 Score=130.74 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=96.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C-------------------------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A------------------------------- 237 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------- 237 (357)
+..+|||||||+|.+. .++...+..+++++|+ +.+++.+++. +
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4579999999999944 3444444568999999 7788765431 0
Q ss_pred -CceEEEcCCCC--C-----CCCC--CEEEeccccccCCh--hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhh
Q 018366 238 -GVEHVGGNMFD--S-----VPEG--DAILMKWILHCWDD--DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSAR 305 (357)
Q Consensus 238 -~v~~~~~D~~~--~-----~p~~--D~i~~~~~lh~~~~--~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~ 305 (357)
.++++.+|+.+ + ++.+ |+|++..+||++++ ++...+|++++++|||||+|++.+..... .
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-----~--- 221 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-----W--- 221 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-----E---
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc-----e---
Confidence 03466678876 2 2232 99999999999543 47889999999999999999998643211 0
Q ss_pred hhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 306 ETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
+. .-+ ... ....++.++|.++|+++||+++++...
T Consensus 222 ~~-~~~----~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 222 YL-AGE----ARL-TVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp EE-ETT----EEE-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EE-cCC----eee-eeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 00 000 000 123468999999999999999877543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-14 Score=120.36 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=96.8
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHh----CCC------CCCceEEEcCCCC-CCCCC
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD----APS------YAGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~v~~~~~D~~~-~~p~~ 253 (357)
+..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +.+.+
T Consensus 20 ~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 98 (218)
T 3mq2_A 20 FEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSG 98 (218)
T ss_dssp HHHHH-TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCC
T ss_pred HHHhh-ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCC
Confidence 33344 45678999999999999999999999999999999 775553 222 2479999999988 55543
Q ss_pred -CEEEecc---cc--ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 254 -DAILMKW---IL--HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 254 -D~i~~~~---~l--h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
|.|++.. .+ ||.++ ...+|++++++|||||++++......-.+.. ..... ..........+
T Consensus 99 ~d~v~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~ 165 (218)
T 3mq2_A 99 VGELHVLMPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAWRPSV------PEVGE-----HPEPTPDSADE 165 (218)
T ss_dssp EEEEEEESCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBC------GGGTT-----CCCCCHHHHHH
T ss_pred CCEEEEEccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEeccccccccc------ccccc-----CCccchHHHHH
Confidence 6655222 22 13422 2689999999999999999944322110000 00000 00011112345
Q ss_pred HHHHHHHHcCCceeEEeec
Q 018366 328 EFTELAIAAGFKHINFASC 346 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~ 346 (357)
++.++++++||++.++...
T Consensus 166 ~l~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 166 WLAPRYAEAGWKLADCRYL 184 (218)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHcCCCceeeecc
Confidence 6888999999999887654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-14 Score=119.24 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=103.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D~i~~~~~lh~ 264 (357)
.+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++. .++++..+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 3567999999999999999876 46678999998 7888777652 24999999998755544 99999887765
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
...+++++++.|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 46889999999999999999654321 36678899999999999988
Q ss_pred ecCCceeEEEEeC
Q 018366 345 SCVCNLYIMEFFK 357 (357)
Q Consensus 345 ~~~~~~~vie~~~ 357 (357)
...+...++.-+|
T Consensus 184 ~~~~w~~~~~~~~ 196 (205)
T 3grz_A 184 RAGRWIGLAISRK 196 (205)
T ss_dssp EETTEEEEEEEEC
T ss_pred ccCCEEEEEEecc
Confidence 8777777766543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=121.29 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=108.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~- 253 (357)
..+++.++ .+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.++.+. .
T Consensus 100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~f 177 (276)
T 2b3t_A 100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQF 177 (276)
T ss_dssp HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCE
T ss_pred HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCc
Confidence 34555443 3457999999999999999999999999999999 7788777642 4799999999885543 3
Q ss_pred CEEEecc-------------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh
Q 018366 254 DAILMKW-------------ILHCWDD----------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL 310 (357)
Q Consensus 254 D~i~~~~-------------~lh~~~~----------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~ 310 (357)
|+|+++. ++++.|. +....+++++.+.|+|||++++...
T Consensus 178 D~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 239 (276)
T 2b3t_A 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------------ 239 (276)
T ss_dssp EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC------------------
T ss_pred cEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------------
Confidence 9999973 4444331 3557899999999999999998421
Q ss_pred hhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEEeC
Q 018366 311 DVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEFFK 357 (357)
Q Consensus 311 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 357 (357)
..+.+++.++++++||+.+++.... +...++.+++
T Consensus 240 ------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 0246788999999999988876654 5555666653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=126.79 Aligned_cols=112 Identities=12% Similarity=0.189 Sum_probs=90.8
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---------------CCCceEEEcCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM 246 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D~ 246 (357)
..+++.+. +.+..+|||||||+|..+..++...+..+++++|+ +.+++.|++ ..+|+|+.+|+
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 45677666 67788999999999999999998887667999999 666655542 25799999999
Q ss_pred CC-CCC----CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCC
Q 018366 247 FD-SVP----EGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIP 298 (357)
Q Consensus 247 ~~-~~p----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~ 298 (357)
++ +++ ..|+|+++++++ + ++....|+++++.|||||+|++.|.+.+.+.
T Consensus 242 ~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 242 LSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred cCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 98 543 349999987764 3 6677889999999999999999999887653
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-14 Score=125.97 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=92.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC---CCCCC--CEEE----
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD---SVPEG--DAIL---- 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~p~~--D~i~---- 257 (357)
.+..+|||||||+|..+..+++..|. +++++|+ |.+++.+++. .++.++.+|..+ +++++ |.|+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 35679999999999999999988775 7888998 8898888652 457888888654 34543 7765
Q ss_pred -eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 258 -MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 258 -~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
....++|+ .+...++++++++|||||+|++++...... .....++ .......+.+...|.++
T Consensus 138 ~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhh--cchhhhhhhhhheeCCCCEEEEEecCCchh-------hhhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 35566666 667899999999999999999865432110 0000000 00111245667788899
Q ss_pred CCceeEE
Q 018366 337 GFKHINF 343 (357)
Q Consensus 337 Gf~~~~~ 343 (357)
||+++.+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9987654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=113.84 Aligned_cols=141 Identities=14% Similarity=0.257 Sum_probs=108.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C--CceEEEcCCCCCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFDSVPE- 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~p~- 252 (357)
+.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. . +++++.+|+.+..+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34566665 556789999999999999999988 678999998 7777776542 3 499999999885554
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
. |+|++...+|+ ..+....+++++++.|+|||++++...... ...++.+
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 168 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKSLAK 168 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHHHHH
Confidence 3 99999888875 346778999999999999999999775321 1235667
Q ss_pred HHHHcCCceeEEeecCCceeEEEEeC
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.+++. |..+++.....+.+++.++|
T Consensus 169 ~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 169 YMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHH-hcceEEEecCCcEEEEEEee
Confidence 77777 77777777777777777765
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-13 Score=117.38 Aligned_cols=152 Identities=13% Similarity=0.034 Sum_probs=95.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec--hHHHHhC---CCC------CCceEEEcCCCCCCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDA---PSY------AGVEHVGGNMFDSVPE 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~~------~~v~~~~~D~~~~~p~ 252 (357)
.+.+.+. .+..+|||||||+|.++..+++..|+.+++++|+ +.+++.| ++. +++.++.+|+.+. |.
T Consensus 16 ~~~~~~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~ 92 (225)
T 3p2e_A 16 ELTEIIG--QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PF 92 (225)
T ss_dssp HHHHHHT--TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CG
T ss_pred HHHHHhC--CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hh
Confidence 4444443 3567999999999999999999899999999998 3454444 442 5689999998763 33
Q ss_pred --CCEEEeccccccCChh------HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccC
Q 018366 253 --GDAILMKWILHCWDDD------HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRER 324 (357)
Q Consensus 253 --~D~i~~~~~lh~~~~~------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (357)
.|.|.+..+.+.|+.. +...+|++++++|||||+++++........ . .. + ....... . .....
T Consensus 93 ~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~--~~-~-~~~~~~~---~-~~~~~ 163 (225)
T 3p2e_A 93 ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYE-E--AE-I-KKRGLPL---L-SKAYF 163 (225)
T ss_dssp GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC----------------------C-CHHHH
T ss_pred hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccch-h--ch-h-hhcCCCC---C-Chhhc
Confidence 2555554444444321 124689999999999999999554332210 0 00 0 0000000 0 00111
Q ss_pred CHHHHHHHHHHcCCceeEEeecC
Q 018366 325 TKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 325 t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
..+++.++++++||++.+....+
T Consensus 164 ~~~el~~~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 164 LSEQYKAELSNSGFRIDDVKELD 186 (225)
T ss_dssp HSHHHHHHHHHHTCEEEEEEEEC
T ss_pred chHHHHHHHHHcCCCeeeeeecC
Confidence 22359999999999988876554
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=120.81 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=79.9
Q ss_pred CCceEEEEcCCcch----HHHHHHhhCC----CCeEEEeec-hHHHHhCCCC----------------------------
Q 018366 194 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 236 (357)
+..+|+|+|||||. ++..+++..| +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666666645 468999999 8888876531
Q ss_pred ---------CCceEEEcCCCC-CCC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 237 ---------AGVEHVGGNMFD-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 237 ---------~~v~~~~~D~~~-~~p--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.+|.|..+|+.+ +++ .. |+|+|.++|++++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 258899999998 465 33 999999999999988889999999999999999988
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=111.45 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=81.7
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C-CceEEEcCCCCCCCC---
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFDSVPE--- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~p~--- 252 (357)
.+++.+. ..+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++. + ++ ++.+|..+.++.
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 4555555 56678999999999999999999999999999999 7788777641 2 67 888888764432
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. |+|++..++|+ ..+++++.+.|||||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 3 99999999987 4789999999999999998664
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-14 Score=120.17 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=92.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCC-----CceEEEcCCCCCCC-----
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA-----GVEHVGGNMFDSVP----- 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-----~v~~~~~D~~~~~p----- 251 (357)
..+++.++...+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++.- +++++.+|+.++++
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 34555554225678999999999999999999999999999999 88888887641 57888888877443
Q ss_pred -CC-CEEEecccccc------CChhHH------------------HHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhh
Q 018366 252 -EG-DAILMKWILHC------WDDDHC------------------LRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSAR 305 (357)
Q Consensus 252 -~~-D~i~~~~~lh~------~~~~~~------------------~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~ 305 (357)
.. |+|++...++. ++++.. ..++++++++|||||++++++...
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----------
Confidence 23 99999654433 222211 688999999999999966654321
Q ss_pred hhhhhhhhhhhhcCCCccCCHHHHHHHHH--HcCCceeEEeecCCc-eeEEEE
Q 018366 306 ETSLLDVLLMTRDGGGRERTKKEFTELAI--AAGFKHINFASCVCN-LYIMEF 355 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~~~-~~vie~ 355 (357)
...+++.++++ ++||..+++.....+ ..++.+
T Consensus 168 ------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~ 202 (215)
T 4dzr_A 168 ------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAV 202 (215)
T ss_dssp ------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEE
T ss_pred ------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEE
Confidence 13566778888 899998888776543 344443
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.8e-13 Score=130.26 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=88.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC------------CCCceEEEcCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFD- 248 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~- 248 (357)
.+++.+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ .++++++.+|+.+
T Consensus 712 ~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL 790 (950)
T 3htx_A 712 YALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF 790 (950)
T ss_dssp HHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC
T ss_pred HHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC
Confidence 3444444 3456899999999999999999998 5578999999 888887754 2469999999988
Q ss_pred CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 249 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 249 ~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+.+.+ |+|++..++||++++....+++++++.|||| .+++..+.
T Consensus 791 p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 791 DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 55433 9999999999999888889999999999998 77776643
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-13 Score=122.58 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=81.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------------CCceEEEcCCCC-C----CC--C
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFD-S----VP--E 252 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~-~----~p--~ 252 (357)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ + ++ .
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 5679999999999999999884 5678999998 7788776542 268999999987 3 42 2
Q ss_pred -C-CEEEeccccccC--ChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 253 -G-DAILMKWILHCW--DDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 253 -~-D~i~~~~~lh~~--~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
. |+|++..++|+. +.++...+|++++++|||||++++..+.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3 999999999987 4466789999999999999999998763
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-13 Score=121.23 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=99.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C--------CceEEEcCCCC---------CCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A--------GVEHVGGNMFD---------SVP 251 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--------~v~~~~~D~~~---------~~p 251 (357)
+..+|||||||+|..+..++... ..+++++|+ +.+++.|+++ . +++|...|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 35799999999998777666543 458999999 8899888753 1 15677888722 234
Q ss_pred CC--CEEEecccccc-CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCC------------CCCchhhhhhhh----hh
Q 018366 252 EG--DAILMKWILHC-WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIP------------EVSSSARETSLL----DV 312 (357)
Q Consensus 252 ~~--D~i~~~~~lh~-~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~------------~~~~~~~~~~~~----~~ 312 (357)
.+ |+|+|..++|+ +..++...+|++++++|||||++++..+....-. .......+.... +.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 33 99999999997 4545678999999999999999998776321100 000000000000 00
Q ss_pred --hhhhh--cCC--CccCCHHHHHHHHHHcCCceeEEeec
Q 018366 313 --LLMTR--DGG--GRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 313 --~~~~~--~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
.+... ... -...+.+++.++++++||+++.....
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00000 000 12457899999999999999887654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-13 Score=117.55 Aligned_cols=107 Identities=11% Similarity=0.123 Sum_probs=81.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CC------CCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SV------PEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~------p~~ 253 (357)
...+++.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.|++.++++..-.++..|+.+ +. +..
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 345666666 667789999999999999999987 458899998 8888887653111122233322 11 223
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++..++||++.++...+++++.++| |||++++...
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999999999999889999999999999 9999998654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-13 Score=119.41 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=77.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC---CCCCC--CEEEe-cc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD---SVPEG--DAILM-KW 260 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~p~~--D~i~~-~~ 260 (357)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .+++++.+|+.+ +++++ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 3567999999999999999976544 37899998 8888777642 468999999865 35543 99998 55
Q ss_pred c--cccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 261 I--LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 261 ~--lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
. .+++..+....++++++++|||||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 5 33443455668899999999999999997754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=112.53 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=94.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhC----CCCCCceEEEcCCCCC--CC--C-C-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFDS--VP--E-G-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~~--~p--~-~-D~i~~~ 259 (357)
+++..+|||+|||+|.++..+++. .|+-+++++|+ +.+++.+ ++.+++..+.+|..++ .+ . . |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678899999999999999999987 48889999998 7777654 3457899999988762 22 2 2 888763
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
+++. ++...+++++++.|||||+++|.......+.. .......++..+.|+++||+
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~--------------------~p~~~~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVT--------------------TEPSEVYKREIKTLMDGGLE 210 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHH--------------------TCCCHHHHHHHHHHHHTTCC
T ss_pred --ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCCCC--------------------CChHHHHHHHHHHHHHCCCE
Confidence 3332 45678999999999999999986532211100 00000123345678899999
Q ss_pred eeEEeecCC
Q 018366 340 HINFASCVC 348 (357)
Q Consensus 340 ~~~~~~~~~ 348 (357)
.++......
T Consensus 211 l~e~i~L~p 219 (233)
T 4df3_A 211 IKDVVHLDP 219 (233)
T ss_dssp EEEEEECTT
T ss_pred EEEEEccCC
Confidence 998877653
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-12 Score=109.59 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=78.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C--CCCC--CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S--VPEG--DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~p~~--D~i~~~~~ 261 (357)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++.++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 456899999999999999999999999999998 7888777542 579999999987 3 4443 99998765
Q ss_pred cccCChh------HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 262 LHCWDDD------HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 262 lh~~~~~------~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.++.... ....+++++.++|+|||++++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4332111 12579999999999999998854
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=111.02 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=97.8
Q ss_pred CCCceEEEEcCC-cchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC--CCCCC--CEEEeccc
Q 018366 193 QNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD--SVPEG--DAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~--~~p~~--D~i~~~~~ 261 (357)
++..+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.. +++.. |+|++.-.
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 467899999999 999999999986 678999998 8888877642 269999999643 45533 99999877
Q ss_pred cccCChh-----------------HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccC
Q 018366 262 LHCWDDD-----------------HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRER 324 (357)
Q Consensus 262 lh~~~~~-----------------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (357)
+++.++. ....+++++.+.|||||+++++..... .
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------------~ 184 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE----------------------------K 184 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------H
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------h
Confidence 7654332 237899999999999999999643110 1
Q ss_pred CHHHHHHHHHHcCCceeEEeecCCc--eeEEEEe
Q 018366 325 TKKEFTELAIAAGFKHINFASCVCN--LYIMEFF 356 (357)
Q Consensus 325 t~~e~~~ll~~aGf~~~~~~~~~~~--~~vie~~ 356 (357)
+.+++.++++++||.+..+....+. ..++.+.
T Consensus 185 ~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~ 218 (230)
T 3evz_A 185 LLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFF 218 (230)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEE
T ss_pred HHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEe
Confidence 2567889999999987666544433 3355554
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-12 Score=107.67 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=93.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHH----HHhCCCCCCceEEEcCCCCC-----CCCC-CEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFDS-----VPEG-DAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~-----~p~~-D~i~~~~ 260 (357)
..+..+|||+|||+|.++..+++..++.+++++|+ +.+ .+.++...++.++.+|+.++ .+.. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45677999999999999999999988778999998 543 44454456788888988762 2333 999986
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH----HHHHHc
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT----ELAIAA 336 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~ll~~a 336 (357)
+.++ ++...++++++++|||||++++.-...+ . .. ..+.+++. +.++++
T Consensus 134 ~~~~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~---------~~-~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQK---NQIEILKANAEFFLKEKGEVVIMVKARS--------------I---------DS-TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCST---THHHHHHHHHHHHEEEEEEEEEEEEHHH--------------H---------CT-TSCHHHHHHHHHHHHHTT
T ss_pred ccCh---hHHHHHHHHHHHHhCCCCEEEEEEecCC--------------c---------cc-cCCHHHHHHHHHHHHHhh
Confidence 3222 3445679999999999999999732210 0 00 01223321 237888
Q ss_pred CCceeEEeecC---CceeEEEEe
Q 018366 337 GFKHINFASCV---CNLYIMEFF 356 (357)
Q Consensus 337 Gf~~~~~~~~~---~~~~vie~~ 356 (357)
|++++..... ..++++.++
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~ 208 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAY 208 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEE
Confidence 9999987763 345666554
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.2e-13 Score=113.01 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=83.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCC--CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEG--DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~ 264 (357)
.+..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ +++.+ |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45679999999999999999998765 7888998 777776654 2579999999988 66543 99999999877
Q ss_pred CC-------------hhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 265 WD-------------DDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 265 ~~-------------~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+. .++...+|+++.++|||||++++.++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 64 356789999999999999999998864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-13 Score=120.19 Aligned_cols=125 Identities=12% Similarity=0.092 Sum_probs=93.5
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~- 253 (357)
.++..++ +.+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.++++..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4555555 667789999999999999999998 78889999998 777776543 147999999998866653
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+|++ +.+ +...+|+++.++|||||++++...... ..+++.+.
T Consensus 180 fD~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99998 343 335889999999999999999764210 13456677
Q ss_pred HHHcCCceeEEee
Q 018366 333 AIAAGFKHINFAS 345 (357)
Q Consensus 333 l~~aGf~~~~~~~ 345 (357)
++++||+.++...
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7788998877655
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.2e-12 Score=106.33 Aligned_cols=122 Identities=12% Similarity=0.141 Sum_probs=93.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C-CceEEEcCCCCCCC---C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFDSVP---E 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~p---~ 252 (357)
.++..+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. + +++++.+|+.+..+ .
T Consensus 46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 3455555 566789999999999999999988 678999998 8888877642 3 79999999987322 2
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.|+|++...+ +.. +++++.+.|||||++++..... -+..++.++
T Consensus 123 ~D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~ 166 (204)
T 3njr_A 123 PEAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQL 166 (204)
T ss_dssp CSEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHH
Confidence 3999987744 233 8999999999999999855321 024567788
Q ss_pred HHHcCCceeEEe
Q 018366 333 AIAAGFKHINFA 344 (357)
Q Consensus 333 l~~aGf~~~~~~ 344 (357)
+++.||++.++.
T Consensus 167 l~~~g~~i~~i~ 178 (204)
T 3njr_A 167 HARHGGQLLRID 178 (204)
T ss_dssp HHHHCSEEEEEE
T ss_pred HHhCCCcEEEEE
Confidence 899998877753
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.9e-13 Score=116.22 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=96.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---C--CceEEEcCCCCCCCC-C-CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A--GVEHVGGNMFDSVPE-G-DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--~v~~~~~D~~~~~p~-~-D~i~~~~~lh~ 264 (357)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. . .+++..+|+.+.++. . |+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4567999999999999999988765 8889998 7777776642 1 288999998764443 3 9999865443
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
....+++++.+.|||||++++.+... .+.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILK-----------------------------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeecc-----------------------------CCHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999999999965432 136788899999999999987
Q ss_pred ecCCceeE
Q 018366 345 SCVCNLYI 352 (357)
Q Consensus 345 ~~~~~~~v 352 (357)
...+...+
T Consensus 243 ~~~~W~~l 250 (254)
T 2nxc_A 243 AEGEWVLL 250 (254)
T ss_dssp EETTEEEE
T ss_pred ccCCeEEE
Confidence 76655443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-12 Score=113.25 Aligned_cols=128 Identities=13% Similarity=0.158 Sum_probs=99.5
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~ 252 (357)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.+.++.
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 345566555 667789999999999999999999 78999999999 7888877652 4599999999887665
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT 330 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 330 (357)
. |+|++ +.+ +...+++++.++|+|||++++..+..+ ...++.
T Consensus 161 ~~~D~v~~-----~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 204 (255)
T 3mb5_A 161 ENVDHVIL-----DLP--QPERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLH 204 (255)
T ss_dssp CSEEEEEE-----CSS--CGGGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCC--CHHHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHH
Confidence 4 99987 233 335789999999999999999764211 134567
Q ss_pred HHHHHcC--CceeEEeec
Q 018366 331 ELAIAAG--FKHINFASC 346 (357)
Q Consensus 331 ~ll~~aG--f~~~~~~~~ 346 (357)
++++++| |..+++...
T Consensus 205 ~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 205 EKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHTGGGBSCCEEECC
T ss_pred HHHHHcCCCccccEEEEE
Confidence 7888899 988877654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=106.03 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=96.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHH----hCCCCCCceEEEcCCCCC-----CCCC-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQ----DAPSYAGVEHVGGNMFDS-----VPEG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~p~~-D~i~~~ 259 (357)
+.+..+|||+|||+|.++..+++.. |+.+++++|. +.+++ .++..++++++.+|+.+. .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567799999999999999999885 6678999998 64444 344447899999999872 2334 999975
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
.. .......+++++++.|||||++++. ........... ....+.+++.++ .++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~------------------~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTKE------------------PEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTSC------------------HHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCCC------------------hhhhhHHHHHHH-Hhh-ce
Confidence 44 1233445699999999999999997 22111100000 001235677777 777 99
Q ss_pred eeEEeecCCc---eeEEEEeC
Q 018366 340 HINFASCVCN---LYIMEFFK 357 (357)
Q Consensus 340 ~~~~~~~~~~---~~vie~~~ 357 (357)
.++....... ..++.++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred eeeEeccCcccCCCEEEEEEe
Confidence 9988776543 55665543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=109.43 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=76.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-C--CCCC--CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-S--VPEG--DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~p~~--D~i~~~~~ 261 (357)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++.++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 356899999999999999999999999999999 778877654 2579999999876 2 5543 98877544
Q ss_pred cccCChhH------HHHHHHHHHHhCCCCCEEEEEe
Q 018366 262 LHCWDDDH------CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 262 lh~~~~~~------~~~~L~~~~~~LkpgG~l~i~e 291 (357)
..+..... ...+|+++++.|||||+|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 33221111 2578999999999999999864
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.6e-13 Score=113.91 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=88.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCC--CCC-CC--CEEEeccccccC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFD--SVP-EG--DAILMKWILHCW 265 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~--~~p-~~--D~i~~~~~lh~~ 265 (357)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .+ |+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 35679999999999999999998 568999998 888887765 4689999999966 444 33 9999862
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+...+|++++++|||||+++.. +...+.+++.++++++||..+.+..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYV------------------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEE------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEe------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 2347799999999999999910 0112455788888999998877654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.7e-13 Score=108.12 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=94.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC-CCCC-CEEEeccccccC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS-VPEG-DAILMKWILHCW 265 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-~p~~-D~i~~~~~lh~~ 265 (357)
++.+|||+|||+|-++..++...|+.+++++|+ +.+++.+++. ...++...|..+. .+.. |+|+...++|+.
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHlL 128 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPVL 128 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHhh
Confidence 578999999999999999999999999999999 8899888752 1223333676653 3343 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
++....+.++.+.|+|||.++..+.-.-.++. .+....-...|++.+ ...+.+++...
T Consensus 129 --~~~~~al~~v~~~L~pggvfISfptksl~Gr~-------------------~gm~~~Y~~~~~~~~-~~~~~~~~~~~ 186 (200)
T 3fzg_A 129 --KQQDVNILDFLQLFHTQNFVISFPIKSLSGKE-------------------KGMEENYQLWFESFT-KGWIKILDSKV 186 (200)
T ss_dssp --HHTTCCHHHHHHTCEEEEEEEEEECCCCC--C-------------------TTCCCCHHHHHHHHT-TTTSCEEEEEE
T ss_pred --hhhHHHHHHHHHHhCCCCEEEEeChHHhcCCC-------------------cchhhhHHHHHHHhc-cCcceeeeeee
Confidence 55567777999999999999887732211111 122233456777777 44556666655
Q ss_pred cC
Q 018366 346 CV 347 (357)
Q Consensus 346 ~~ 347 (357)
.+
T Consensus 187 ~~ 188 (200)
T 3fzg_A 187 IG 188 (200)
T ss_dssp ET
T ss_pred eC
Confidence 53
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-12 Score=111.12 Aligned_cols=140 Identities=11% Similarity=0.026 Sum_probs=94.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hH----HHHhCCCCCCceEEEcCCCCC--CC--C-C-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFDS--VP--E-G-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~--~p--~-~-D~i~~~ 259 (357)
+.+..+|||+|||+|.++..+++.+ |+.+++++|+ +. +++.++...+++++.+|+.++ ++ . . |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999998 44 344454457899999999872 22 2 3 999985
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
.. ..+....+++++.+.|||||++++.-........... . .+-..+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~----------~---------~~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASA----------E---------AVFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCH----------H---------HHHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCH----------H---------HHHHHH-HHHHHHCCCc
Confidence 44 2244567799999999999999994221100000000 0 000123 5888999999
Q ss_pred eeEEeecCCc---eeEEEE
Q 018366 340 HINFASCVCN---LYIMEF 355 (357)
Q Consensus 340 ~~~~~~~~~~---~~vie~ 355 (357)
+++....... ..++.+
T Consensus 211 ~~~~~~~~~~~~~~~~v~~ 229 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVG 229 (233)
T ss_dssp EEEEEECTTTSSSEEEEEE
T ss_pred eEEEEecCCccCCcEEEEE
Confidence 9987665432 554444
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=106.46 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=92.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE--G 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~--~ 253 (357)
.++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++. +++.+..+|+.++++. .
T Consensus 24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 3445455 5667899999999999999999987 68899998 7777766541 5789999998763332 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+|++..+++++ ..+++++.+.|+|||++++..... .+..++.++
T Consensus 101 ~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~ 146 (192)
T 1l3i_A 101 IDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMEC 146 (192)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHH
Confidence 999999887653 688999999999999999865421 024567788
Q ss_pred HHHcCCce
Q 018366 333 AIAAGFKH 340 (357)
Q Consensus 333 l~~aGf~~ 340 (357)
+++.||..
T Consensus 147 l~~~g~~~ 154 (192)
T 1l3i_A 147 LRDLGFDV 154 (192)
T ss_dssp HHHTTCCC
T ss_pred HHHCCCce
Confidence 99999944
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.1e-12 Score=113.02 Aligned_cols=129 Identities=14% Similarity=0.185 Sum_probs=93.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC-CC--CC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD-SV--PE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~-~~--p~-~-D~i 256 (357)
.++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 3567999999999999999998877789999998 777776653 2679999999876 21 33 3 999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 257 LMKWILHCWDDDHC--LRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 257 ~~~~~lh~~~~~~~--~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
++....+..+.... .+++++++++|||||++++..... +. ...+..++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~-----------~~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WL-----------DLELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TT-----------CHHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------cc-----------chHHHHHHHHHHH
Confidence 99777666543333 589999999999999999864210 00 0113567889999
Q ss_pred HcCCceeEEeec
Q 018366 335 AAGFKHINFASC 346 (357)
Q Consensus 335 ~aGf~~~~~~~~ 346 (357)
++||..++....
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998877543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=109.30 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=74.7
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-CEEEeccccccC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G-DAILMKWILHCW 265 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~-D~i~~~~~lh~~ 265 (357)
..+|||+|||+|.++..++..+|+.+++++|. +.+++.+++. .++++..+|+.+..+. . |+|++.. ++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~-~~-- 142 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA-FA-- 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC-SS--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec-cC--
Confidence 57999999999999999999999999999998 7777766541 3599999999884343 3 9999754 22
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+...+++++.+.|+|||++++..
T Consensus 143 ---~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 143 ---SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 34689999999999999999963
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=106.09 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=75.1
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC--CCC-CC-CEEEec-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD--SVP-EG-DAILMK- 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~p-~~-D~i~~~- 259 (357)
.++..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. ++++++..|+.. ..+ .. |+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 346689999999999999999988 678999998 8888887652 578999877655 233 33 999876
Q ss_pred cccccC------ChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 260 WILHCW------DDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 260 ~~lh~~------~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
..+++. ..+....+|+++.+.|||||+++++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 333320 2256678999999999999999997653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-12 Score=116.97 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=86.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcCCCCCCCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~p~~ 253 (357)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .++++..+|+.++++.+
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566666 44458999999999999999999999999999999 7788877652 14788999999876653
Q ss_pred --CEEEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 --DAILMKWILHC---WDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 --D~i~~~~~lh~---~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++...+|+ .++....++++++.+.|||||+++++..
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 99999999885 3345556899999999999999999653
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.6e-11 Score=102.29 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=96.2
Q ss_pred HHHhhcc--cCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHH----HHhCCCCCCceEEEcCCCCCC-----
Q 018366 184 RILEHYE--GFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFDSV----- 250 (357)
Q Consensus 184 ~i~~~l~--~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~~----- 250 (357)
.++..++ .+++..+|||+|||+|.++..+++. .|+.+++++|+ +.+ ++.+++..++.++.+|+..+.
T Consensus 64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~ 143 (232)
T 3id6_C 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSV 143 (232)
T ss_dssp HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTT
T ss_pred HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhcc
Confidence 4444443 1567789999999999999999986 46779999998 655 344444578999999987621
Q ss_pred CCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018366 251 PEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEF 329 (357)
Q Consensus 251 p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 329 (357)
+.. |+|++.... + .....+++.+++.|||||+|++.......+. +....+ ..++.
T Consensus 144 ~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~-------------------t~~~~e-~~~~~ 199 (232)
T 3id6_C 144 VENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDV-------------------TKDPKE-IYKTE 199 (232)
T ss_dssp CCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC--------------------------CCSSS-STTHH
T ss_pred ccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCccc-------------------CCCHHH-HHHHH
Confidence 223 999886543 2 2333445666679999999999732211100 001111 12345
Q ss_pred HHHHHHcCCceeEEeecCC---ceeEEEEe
Q 018366 330 TELAIAAGFKHINFASCVC---NLYIMEFF 356 (357)
Q Consensus 330 ~~ll~~aGf~~~~~~~~~~---~~~vie~~ 356 (357)
.+.|+++||++++...... .+.++.++
T Consensus 200 ~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 200 VEKLENSNFETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp HHHHHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred HHHHHHCCCEEEEEeccCCCcCceEEEEEE
Confidence 5677889999999887743 35555443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=108.69 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=97.0
Q ss_pred HHHHHhhcccCC-CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHh-CCCCCCceEEE-cCCCC----CCCC-
Q 018366 182 MERILEHYEGFQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD-APSYAGVEHVG-GNMFD----SVPE- 252 (357)
Q Consensus 182 ~~~i~~~l~~~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~v~~~~-~D~~~----~~p~- 252 (357)
...+++.+. .. +..+|||||||||.++..+++. +..+++++|+ +.|++. .+..+++.... .|+.. .+|.
T Consensus 73 l~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 73 LEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred HHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence 345666665 33 4569999999999999998887 4458999998 777776 34445654433 34332 2343
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe-eccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018366 253 -GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN-SIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT 330 (357)
Q Consensus 253 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 330 (357)
.|+|++..++|++ ..+|++++++|||||+++++- +-.+..+. .........|. ..+.++.+++.
T Consensus 151 ~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~--~~~~~G~vrd~-------~~~~~~~~~v~ 216 (291)
T 3hp7_A 151 LPSFASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGRE--QIGKNGIVRES-------SIHEKVLETVT 216 (291)
T ss_dssp CCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGG--GCC-CCCCCCH-------HHHHHHHHHHH
T ss_pred CCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChh--hcCCCCccCCH-------HHHHHHHHHHH
Confidence 3999998888765 578999999999999999862 11111000 00000000000 01123678899
Q ss_pred HHHHHcCCceeEEeecC
Q 018366 331 ELAIAAGFKHINFASCV 347 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~~ 347 (357)
++++++||.+..+...+
T Consensus 217 ~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 217 AFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHTTEEEEEEEECS
T ss_pred HHHHHCCCEEEEEEECC
Confidence 99999999998876654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-12 Score=111.50 Aligned_cols=127 Identities=13% Similarity=0.169 Sum_probs=96.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~ 252 (357)
..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. +++++..+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 45666666 667789999999999999999998 67889999998 7777766542 579999999988 4665
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT 330 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 330 (357)
+ |+|++ +++ +...+|+++.++|+|||++++..+..+ ...++.
T Consensus 165 ~~~D~v~~-----~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 208 (258)
T 2pwy_A 165 AAYDGVAL-----DLM--EPWKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELV 208 (258)
T ss_dssp TCEEEEEE-----ESS--CGGGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCc--CHHHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 99997 333 234789999999999999999774210 123555
Q ss_pred HHHHHcCCceeEEeec
Q 018366 331 ELAIAAGFKHINFASC 346 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~ 346 (357)
+.++++||..+++...
T Consensus 209 ~~l~~~gf~~~~~~~~ 224 (258)
T 2pwy_A 209 RAAEAHPFRLERVLEV 224 (258)
T ss_dssp HHHTTTTEEEEEEEEE
T ss_pred HHHHHCCCceEEEEEe
Confidence 6777889988776553
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.5e-12 Score=110.49 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=78.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-CEEEeccccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-DAILMKWILH 263 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D~i~~~~~lh 263 (357)
++++.+|||||||+|.++..++.+.++.+++++|+ +++++.|++. .+++++.+|+.+..... |+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 66789999999999988877667778999999999 8899888753 68999999998721223 99998654
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. ++..++++++++.|||||+|++.+.
T Consensus 198 -~--~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 -A--EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp -C--SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred -c--cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2 4567999999999999999999763
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=102.47 Aligned_cols=120 Identities=11% Similarity=0.115 Sum_probs=92.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G-D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~-D 254 (357)
.+++.++ ..+..+|||+|||+|.++..+++ +..+++++|+ +.+++.+++. ++++++.+|+.++++. . |
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 4555555 55677999999999999999998 7789999998 7788777653 5799999998875553 3 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++..+ .+...+++++++. |||++++...... +..++.+.++
T Consensus 103 ~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l~ 145 (183)
T 2yxd_A 103 KAFIGGT------KNIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEFE 145 (183)
T ss_dssp EEEECSC------SCHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHHH
T ss_pred EEEECCc------ccHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHHH
Confidence 9999888 3346889999888 9999999764210 1356778899
Q ss_pred HcCCceeEE
Q 018366 335 AAGFKHINF 343 (357)
Q Consensus 335 ~aGf~~~~~ 343 (357)
++||.+..+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 999876554
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-12 Score=111.24 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=92.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CC----CCC-CEEEec
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SV----PEG-DAILMK 259 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~----p~~-D~i~~~ 259 (357)
.+..+|||||||+|..+..++...|+.+++++|+ +.+++.+++. .+++++.+|+.+ +. +.. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 3567999999999999999999889999999998 7787777642 469999999876 43 233 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
.+ .+...+++.+.++|||||++++....... ...+++.+.++++||.
T Consensus 149 ~~------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV------ARLSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGE 195 (240)
T ss_dssp CC------SCHHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEE
T ss_pred cc------CCHHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCe
Confidence 63 34578999999999999999986321100 0134667888999999
Q ss_pred eeEEee
Q 018366 340 HINFAS 345 (357)
Q Consensus 340 ~~~~~~ 345 (357)
+++...
T Consensus 196 ~~~~~~ 201 (240)
T 1xdz_A 196 LENIHS 201 (240)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 887654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-12 Score=118.32 Aligned_cols=110 Identities=18% Similarity=0.277 Sum_probs=88.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCCC-CE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPEG-DA 255 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~~-D~ 255 (357)
+.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. ..++++.+|+.+..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34566664 33456999999999999999999999989999998 7778777642 24678899988744444 99
Q ss_pred EEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 256 ILMKWILHC---WDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 256 i~~~~~lh~---~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+++.++|+ ...+...++|++++++|||||+++++...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 999999986 23466789999999999999999998753
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-13 Score=118.52 Aligned_cols=145 Identities=10% Similarity=0.041 Sum_probs=95.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC----CCC----CC-CEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD----SVP----EG-DAI 256 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~----~~p----~~-D~i 256 (357)
+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 457999999999999999999888889999998 8888877642 359999999543 444 23 999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCcc
Q 018366 257 LMKWILHCWDD-------------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRE 323 (357)
Q Consensus 257 ~~~~~lh~~~~-------------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (357)
++.-.+|+... +....++++++++|||||.+.+++...... ..............+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~---------~~~l~~~g~~~~~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS---------LQLKKRLRWYSCMLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH---------HHHGGGBSCEEEEESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH---------HhcccceEEEEECCCCh
Confidence 99876665431 112356788999999999998876543210 00000000000112334
Q ss_pred CCHHHHHHHHHHcCCceeEEeecC
Q 018366 324 RTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 324 ~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 456899999999999998876654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.4e-12 Score=106.84 Aligned_cols=102 Identities=12% Similarity=0.162 Sum_probs=80.0
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-C-CC-CC-CEEEe
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-S-VP-EG-DAILM 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~p-~~-D~i~~ 258 (357)
.++..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ + .. .. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4566799999999999999999986 6779999998 7888877652 579999999876 2 33 33 99998
Q ss_pred ccccc-------cCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 259 KWILH-------CWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 259 ~~~lh-------~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
...+. ....++..++++++.++|||||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 76551 112235668999999999999999998754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.5e-12 Score=111.16 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=78.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDH 269 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~ 269 (357)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +++.+ |+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5679999999999999999987 468999998 7888877653222388899887 56544 999998877766433
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeec
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
...+|++++++|||||++++....
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 789999999999999999997754
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=107.73 Aligned_cols=134 Identities=10% Similarity=0.121 Sum_probs=97.9
Q ss_pred CC-CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---CCC-C-CEEE
Q 018366 192 FQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---VPE-G-DAIL 257 (357)
Q Consensus 192 ~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~p~-~-D~i~ 257 (357)
.+ +..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+. ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999775 8999998 7888777652 4699999999872 333 3 9999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcC
Q 018366 258 MKWILHCW------------------DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDG 319 (357)
Q Consensus 258 ~~~~lh~~------------------~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (357)
++-.++.. .......+++.+.+.|||||+++++.. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 96544322 113456899999999999999999531 1
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEeecC------CceeEEEEe
Q 018366 320 GGRERTKKEFTELAIAAGFKHINFASCV------CNLYIMEFF 356 (357)
Q Consensus 320 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~ 356 (357)
....++...+++.||...++.+.. ....+++++
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 217 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGI 217 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEE
Confidence 124567788899999988765542 234466654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-11 Score=102.31 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=79.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC--CCeEEEeechHHHHhCCCCCCceEEEcCCCC-C---------
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP--QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD-S--------- 249 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------- 249 (357)
+.++.+.+..+.+..+|||+|||+|.++..+++.+| +.+++++|+.++. ..++++++.+|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccc
Confidence 345555555345678999999999999999999988 6899999985531 23579999999987 3
Q ss_pred ----------------CCC-C-CEEEeccccccCC----hhH-----HHHHHHHHHHhCCCCCEEEEEe
Q 018366 250 ----------------VPE-G-DAILMKWILHCWD----DDH-----CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 250 ----------------~p~-~-D~i~~~~~lh~~~----~~~-----~~~~L~~~~~~LkpgG~l~i~e 291 (357)
++. . |+|++...+|+.. +.. ...+|++++++|||||++++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 343 3 9999988877632 111 1248999999999999998843
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=104.09 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=98.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC---CCEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE---GDAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~---~D~i~~~~~l 262 (357)
+..+|+|||||+|.++..+++..|..+++++|+ +.+++.|++. ++|+++.+|.+++++. .|+|++.++
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~- 93 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM- 93 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE-
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC-
Confidence 557999999999999999999999889999998 7788777652 4799999999886552 399887664
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
..+-...+|....+.|+|+|++++.-. ...+.++++|.+.||.+++
T Consensus 94 ---Gg~~i~~Il~~~~~~L~~~~~lVlq~~-------------------------------~~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 94 ---GGRLIARILEEGLGKLANVERLILQPN-------------------------------NREDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp ---CHHHHHHHHHHTGGGCTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEEE
T ss_pred ---ChHHHHHHHHHHHHHhCCCCEEEEECC-------------------------------CCHHHHHHHHHHCCCEEEE
Confidence 334567999999999999999888221 1356788999999999987
Q ss_pred Eee--cCCc-eeEEEEe
Q 018366 343 FAS--CVCN-LYIMEFF 356 (357)
Q Consensus 343 ~~~--~~~~-~~vie~~ 356 (357)
..- ..+. +.+|.+.
T Consensus 140 e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 140 ESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEETTEEEEEEEEE
T ss_pred EEEEEECCEEEEEEEEE
Confidence 643 2333 3355543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-12 Score=110.34 Aligned_cols=99 Identities=9% Similarity=0.180 Sum_probs=77.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCC----CCCC--CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDS----VPEG--DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~----~p~~--D~i~~~~ 260 (357)
+..+|||||||+|.++..+++.+|+..++++|+ +.+++.+++ ..++.++.+|+.+. ++.+ |.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 456999999999999999999999999999999 777776653 25799999998762 5554 9998875
Q ss_pred ccccCChhHH------HHHHHHHHHhCCCCCEEEEEee
Q 018366 261 ILHCWDDDHC------LRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 261 ~lh~~~~~~~------~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
...+...... ..++++++++|||||++++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 4433222221 2599999999999999998653
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.7e-12 Score=104.24 Aligned_cols=109 Identities=11% Similarity=0.076 Sum_probs=83.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCC-CC---CCC--CEEEecccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD-SV---PEG--DAILMKWIL 262 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~---p~~--D~i~~~~~l 262 (357)
..+..+|||||||. +.+|. +.|++.++++ .+++++.+|+.+ +. +.+ |+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56778999999996 12776 7788877653 359999999987 44 443 999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018366 263 HCW-DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGF 338 (357)
Q Consensus 263 h~~-~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 338 (357)
||+ ++. .++|++++++|||||++++.++...... .....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC
Confidence 998 543 6899999999999999999765432210 01223578999999999999
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-11 Score=112.93 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=85.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhC-------CC--------CCCceEEEcCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-------PS--------YAGVEHVGGNM 246 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~v~~~~~D~ 246 (357)
..+++.+. ..+..+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+++++.+|.
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 35566565 66778999999999999999999888778999998 6666555 32 25789988764
Q ss_pred CC-C--C---CC-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCC
Q 018366 247 FD-S--V---PE-GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEI 297 (357)
Q Consensus 247 ~~-~--~---p~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~ 297 (357)
+. + + .. .|+|++.++++ . ++....|+++.+.|||||+|++.+.+.+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~-~--~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccc-c--ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 43 2 2 12 39999987773 2 567788999999999999999998776653
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-11 Score=102.56 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=101.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCC-C--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVP-E-- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p-~-- 252 (357)
.+.+.++ +..+|+|||||+|.++..+++..|..+++++|+ +.+++.|++. ++|+++.+|.++..+ .
T Consensus 14 ~i~~~v~---~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~ 90 (230)
T 3lec_A 14 KVANYVP---KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADN 90 (230)
T ss_dssp HHHTTSC---TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC
T ss_pred HHHHhCC---CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccc
Confidence 4444443 567999999999999999999988888999998 7788877652 579999999998443 2
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.|+|++.++. .+-...+|....+.|+++|+|++.-. ...+.+++|
T Consensus 91 ~D~IviaGmG----g~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------~~~~~lr~~ 135 (230)
T 3lec_A 91 IDTITICGMG----GRLIADILNNDIDKLQHVKTLVLQPN-------------------------------NREDDLRKW 135 (230)
T ss_dssp CCEEEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHH
T ss_pred cCEEEEeCCc----hHHHHHHHHHHHHHhCcCCEEEEECC-------------------------------CChHHHHHH
Confidence 3998876654 35577899999999999999888321 126788999
Q ss_pred HHHcCCceeEEeec--CC-ceeEEEEe
Q 018366 333 AIAAGFKHINFASC--VC-NLYIMEFF 356 (357)
Q Consensus 333 l~~aGf~~~~~~~~--~~-~~~vie~~ 356 (357)
|.+.||.+++-.-. .+ .+.+|.+.
T Consensus 136 L~~~Gf~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 136 LAANDFEIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp HHHTTEEEEEEEEEEC--CEEEEEEEE
T ss_pred HHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence 99999999876432 33 34466553
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.23 E-value=8.6e-12 Score=114.69 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=85.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCCC-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D 254 (357)
.+++.+. ..+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ +.+.. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4566555 446679999999999999998886 55689999985566655431 579999999988 55655 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
+|++..+++|+..+.....+.++++.|||||++++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999999999988787888999999999999999854
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=110.48 Aligned_cols=128 Identities=15% Similarity=0.200 Sum_probs=96.9
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~ 252 (357)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.+.++.
T Consensus 101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 345666665 667789999999999999999999 67889999998 7777776542 4689999999876554
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT 330 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 330 (357)
. |+|++. .+ +...+|+++.++|+|||++++.+...+ ...++.
T Consensus 180 ~~~D~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~-----------------------------~~~~~~ 223 (277)
T 1o54_A 180 KDVDALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 223 (277)
T ss_dssp CSEEEEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CccCEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 999972 32 334889999999999999999764210 123455
Q ss_pred HHHHHcCCceeEEeec
Q 018366 331 ELAIAAGFKHINFASC 346 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~ 346 (357)
+.++++||..++....
T Consensus 224 ~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 224 KKLQELPFIRIEVWES 239 (277)
T ss_dssp HHHHHSSEEEEEEECC
T ss_pred HHHHHCCCceeEEEEE
Confidence 6777889887776553
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=105.09 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=78.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCCC--C-CEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVPE--G-DAI 256 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p~--~-D~i 256 (357)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++|+++.+|+.+ ..+. . |+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 34568999999999999999999998 789999999 7788776642 479999999865 2322 3 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
++... .+....+|+++.+.|||||+|++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 98542 3556789999999999999998866654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=100.45 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=82.5
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhCCCCCCceEEEcCCCC-C--------CCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD-S--------VPEG 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------~p~~ 253 (357)
.+++.+....+..+|||+|||+|.++..+++.+ |+.+++++|+.++++ ..+++++.+|+.+ + ++.+
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCC
Confidence 455555434566799999999999999999984 778999999844432 2679999999987 4 5543
Q ss_pred --CEEEeccccccCChhH---------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 --DAILMKWILHCWDDDH---------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~---------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++..++|+.+... ...+++++.+.|+|||++++...
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999988765431 15899999999999999998765
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-11 Score=106.10 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=77.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCC-------C-CCE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVP-------E-GDA 255 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p-------~-~D~ 255 (357)
.++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+..+ . .|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 3567999999999999999999998 789999998 7777776541 469999999875211 2 399
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|++.... +....+++++.+.|+|||++++.+...
T Consensus 137 v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 137 IFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp EEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred EEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 9876542 455789999999999999888866654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=106.57 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=84.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhh--CCCCeEEEeec-hHHHHhCCCC---C-------C------------
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY---A-------G------------ 238 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~---~-------~------------ 238 (357)
.+++.++ ..+..+|||+|||+|.++..+++. .+..+++++|+ +.+++.+++. . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444443 234579999999999999999998 77788999999 8888877631 2 2
Q ss_pred -------------ce-------------EEEcCCCCCC------CC-C-CEEEeccccccCCh-------hHHHHHHHHH
Q 018366 239 -------------VE-------------HVGGNMFDSV------PE-G-DAILMKWILHCWDD-------DHCLRILKNC 277 (357)
Q Consensus 239 -------------v~-------------~~~~D~~~~~------p~-~-D~i~~~~~lh~~~~-------~~~~~~L~~~ 277 (357)
++ ++.+|+++.. +. . |+|+++..++...+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 66 9999998854 33 3 99999877665432 5667999999
Q ss_pred HHhCCCCCEEEEEeec
Q 018366 278 YKAIPDNGKVIVMNSI 293 (357)
Q Consensus 278 ~~~LkpgG~l~i~e~~ 293 (357)
+++|+|||+++++...
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999996544
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-11 Score=104.67 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=87.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceE--------EE-cCCCCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEH--------VG-GNMFDSVP 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~--------~~-~D~~~~~p 251 (357)
..+++.++......+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ .+++.. .. .|+..+.+
T Consensus 26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 4555556522345699999999999999999883 348999998 777766443 233322 22 22211111
Q ss_pred CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 252 EGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 252 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|.+.+..++.++ ..+|++++++|||||++++.. .+. ...........-..........+.+++.+
T Consensus 105 --d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~~l~~ 169 (232)
T 3opn_A 105 --SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIEKVLK 169 (232)
T ss_dssp --SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHHHHHH
T ss_pred --CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHHHHHH
Confidence 444444444443 578999999999999999853 110 00000000000000000011236889999
Q ss_pred HHHHcCCceeEEeecC
Q 018366 332 LAIAAGFKHINFASCV 347 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~ 347 (357)
+++++||++..+...+
T Consensus 170 ~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 170 TATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHTEEEEEEEECS
T ss_pred HHHHCCCEEEEEEEcc
Confidence 9999999998876543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-11 Score=100.41 Aligned_cols=99 Identities=11% Similarity=-0.014 Sum_probs=79.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC---CC-CC-CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS---VP-EG-DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~p-~~-D~i~~~~~ 261 (357)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+. .+ .. |+|++...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 4579999999999999988775 4557999998 8888877652 4799999998772 32 33 99999888
Q ss_pred cccCChhHHHHHHHHHHH--hCCCCCEEEEEeecc
Q 018366 262 LHCWDDDHCLRILKNCYK--AIPDNGKVIVMNSIV 294 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~--~LkpgG~l~i~e~~~ 294 (357)
+|+. .++..++++.+.+ +|+|||++++.....
T Consensus 123 ~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 6653 4677899999999 999999999977644
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-11 Score=105.41 Aligned_cols=100 Identities=13% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC------------CCCCceEEEcCCCCC----CCCC--
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------------SYAGVEHVGGNMFDS----VPEG-- 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~D~~~~----~p~~-- 253 (357)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ...++.++.+|+.+. ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 3456899999999999999999999999999999 77776542 235799999999862 4444
Q ss_pred CEEEeccccccCChhH------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 DAILMKWILHCWDDDH------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|.|++...-.+..... ...+|++++++|||||+|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 8887644322211000 14799999999999999998643
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-11 Score=106.29 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=92.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~~l 262 (357)
++..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|++...
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p- 201 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV- 201 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc-
Confidence 35679999999999999999999876 8999998 8888877642 3589999999884333 3 99988543
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
.....+++++.+.|||||++++.+...... ......+++.+.++++||+...
T Consensus 202 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred -----hhHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 222578999999999999999988753210 0112467788999999998766
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=117.85 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=86.9
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~ 253 (357)
...+++.+. ..+..+|||||||+|.++..+++ .+..+++++|+.++++.+++. ++|+++.+|+.+ +.+..
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 345666665 44567999999999999998887 567799999995577666541 579999999988 66655
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
|+|++..++|++.+++....+.++++.|||||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999888988878888899999999999999985
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=108.44 Aligned_cols=121 Identities=14% Similarity=0.069 Sum_probs=92.3
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCC----CC-CEEEec
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVP----EG-DAILMK 259 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p----~~-D~i~~~ 259 (357)
.+..+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+|+++.+|+.+ +.. .. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4567999999999999999999999999999998 7777777642 469999999876 321 23 999986
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
.+- +...+++.+.+.|||||++++....... -...++.+.++..||.
T Consensus 159 a~~------~~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGR 205 (249)
T ss_dssp SSC------CHHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEE
T ss_pred CcC------CHHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCe
Confidence 542 3468899999999999999985531100 0123466777888999
Q ss_pred eeEEeec
Q 018366 340 HINFASC 346 (357)
Q Consensus 340 ~~~~~~~ 346 (357)
..++.+.
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8887654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-11 Score=103.19 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=80.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC-C-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP-E-G 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p-~-~ 253 (357)
.+++.+. ..+..+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. +++++..+|+..+.+ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 4555554 5567899999999999999999987 6678999998 7787777642 569999999866554 2 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++..++|+++ +++.+.|||||++++...
T Consensus 147 fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred eeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 9999999999985 378899999999999754
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-11 Score=102.38 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=79.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCCCC-C-C-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDSVP-E-G- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~p-~-~- 253 (357)
.++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|..+..+ . .
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 4455555 567789999999999999999998 568899998 778877764 2479999999988433 2 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+|++..++|++++ .+.+.|||||++++....
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999864 578899999999996653
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.4e-11 Score=101.11 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=101.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCC-C--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVP-E-- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p-~-- 252 (357)
.+.+.++ +..+|+|||||+|.++..+++..|..+++++|+ +.+++.|++. ++|++..+|.++.++ .
T Consensus 14 ~i~~~v~---~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~ 90 (244)
T 3gnl_A 14 KVASYIT---KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDA 90 (244)
T ss_dssp HHHTTCC---SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC
T ss_pred HHHHhCC---CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcccc
Confidence 4444443 567999999999999999999988888999998 7788777652 469999999998443 2
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.|+|++.++. .+-...+|....+.|+++++|++.-. ...+.++++
T Consensus 91 ~D~IviagmG----g~lI~~IL~~~~~~L~~~~~lIlq~~-------------------------------~~~~~lr~~ 135 (244)
T 3gnl_A 91 IDTIVIAGMG----GTLIRTILEEGAAKLAGVTKLILQPN-------------------------------IAAWQLREW 135 (244)
T ss_dssp CCEEEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHH
T ss_pred ccEEEEeCCc----hHHHHHHHHHHHHHhCCCCEEEEEcC-------------------------------CChHHHHHH
Confidence 3998876543 35577899999999999999888321 125678899
Q ss_pred HHHcCCceeEEe--ecCC-ceeEEEEe
Q 018366 333 AIAAGFKHINFA--SCVC-NLYIMEFF 356 (357)
Q Consensus 333 l~~aGf~~~~~~--~~~~-~~~vie~~ 356 (357)
|.+.||.+++-. ...+ ++.+|.+.
T Consensus 136 L~~~Gf~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 136 SEQNNWLITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp HHHHTEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence 999999986643 2233 33355543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-11 Score=104.39 Aligned_cols=98 Identities=11% Similarity=0.205 Sum_probs=78.3
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCC-----CC-C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVP-----EG-D 254 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p-----~~-D 254 (357)
.++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++. ++++++.+|+.+ ..+ .. |
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3567999999999999999999865 789999998 8888877652 469999999754 222 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+|++....+++ ....++++.+ +.|||||+|++.+..
T Consensus 137 ~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 99998888777 4455778888 999999999886554
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.7e-11 Score=108.78 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=78.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCC-C-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPE-G- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~-~- 253 (357)
.+.+.+. ..+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ ++|. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 4445444 456679999999999999999887 44589999985577766542 679999999988 6664 3
Q ss_pred CEEEeccccccC-ChhHHHHHHHHHHHhCCCCCEEE
Q 018366 254 DAILMKWILHCW-DDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 254 D~i~~~~~lh~~-~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
|+|++..+.+.+ .......+|+++.+.|||||+++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999987743222 12456789999999999999987
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=9.6e-11 Score=101.65 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=75.7
Q ss_pred CceEEEEcCCcchHHHHHHhh----CCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCCC--CC---C-C-CEEEeccc
Q 018366 195 VERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFDS--VP---E-G-DAILMKWI 261 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~--~p---~-~-D~i~~~~~ 261 (357)
+.+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++|+++.+|..+. ++ . . |+|++...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 469999999999999999987 68899999999 788777764 36899999998773 22 2 2 99987654
Q ss_pred cccCChhHHHHHHHHHHH-hCCCCCEEEEEee
Q 018366 262 LHCWDDDHCLRILKNCYK-AIPDNGKVIVMNS 292 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~-~LkpgG~l~i~e~ 292 (357)
| .+...+|+++.+ .|||||+|++.+.
T Consensus 162 -~----~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 162 -H----ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp -C----SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred -h----HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 245689999997 9999999999664
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-11 Score=104.46 Aligned_cols=133 Identities=11% Similarity=0.052 Sum_probs=100.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCC-CC-CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVP-EG-DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p-~~-D~i~~~~~lh~ 264 (357)
..+.+|||||||.|-++..+....|+.+++++|+ +.+++.+++. .+..+...|+....| .. |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 3578999999999999999999999999999999 7888877652 457888899988444 33 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
..++.....+ ++.+.|+|+|.++..+.-.-.++.. +....-.+.|++.+.+.|....++.
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~-------------------gm~~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSK-------------------GMFQNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC--------------------------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCc-------------------chhhHHHHHHHHHHHhcCCceeeee
Confidence 9777666777 9999999999888877621111110 1112236789999999999655554
Q ss_pred e
Q 018366 345 S 345 (357)
Q Consensus 345 ~ 345 (357)
-
T Consensus 271 ~ 271 (281)
T 3lcv_B 271 I 271 (281)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-11 Score=105.83 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=78.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCC----CC-CEEEec
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVP----EG-DAILMK 259 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p----~~-D~i~~~ 259 (357)
.+..+|||||||+|..+..+++..|+.+++++|+ +.+++.+++. ++++++.+|+.+..+ .. |+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 3567999999999999999999888999999998 8888777642 479999999987433 33 999875
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
... +....+++++.+.|||||+|++-+...
T Consensus 150 ~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp TTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred CcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 432 445789999999999999998855544
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-11 Score=104.84 Aligned_cols=97 Identities=14% Similarity=0.226 Sum_probs=77.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---C-----CCC-CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---V-----PEG-DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~-----p~~-D~ 255 (357)
++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++|+++.+|+.+. . +.. |+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 467999999999999999999886 789999998 7777666542 5799999998762 1 233 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
|++... ..+...+|+++.+.|||||+|++-+....
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 140 IFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp EEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred EEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 987643 35567899999999999999999776654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.9e-11 Score=110.02 Aligned_cols=103 Identities=14% Similarity=0.241 Sum_probs=79.2
Q ss_pred HHHHhhcccCCCCceEEEEcCC------cchHHHHHHhh-CCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCC--
Q 018366 183 ERILEHYEGFQNVERLVDVGGG------FGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVP-- 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p-- 251 (357)
+.++..+. .++.+||||||| +|..+..+++. +|+.+++++|+ +.+.. ..++++++.+|+.+ +++
T Consensus 207 e~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~ 281 (419)
T 3sso_A 207 DRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDR 281 (419)
T ss_dssp HHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHH
T ss_pred HHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhh
Confidence 34454443 346799999999 67667777665 59999999999 66532 34789999999987 444
Q ss_pred -----CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 252 -----EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 252 -----~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.. |+|++.. .|++ ++....|++++++|||||++++.|..
T Consensus 282 l~~~d~sFDlVisdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 282 IARRYGPFDIVIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHHCCEEEEEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred hhcccCCccEEEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 23 9999864 5666 66789999999999999999998875
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-11 Score=110.47 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=76.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCCC--CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPEG--DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~--D~i~~~~~l 262 (357)
.+..+|||||||+|.++..+++. +..+++++|+.++++.+++. ++++++.+|+.+ ++|.+ |+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 35679999999999999999987 56689999986577766542 459999999998 67643 999997765
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 263 HCW-DDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 263 h~~-~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
+++ ..+....+++.+.++|||||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 543 234567899999999999999874
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=7.1e-11 Score=102.00 Aligned_cols=100 Identities=14% Similarity=0.228 Sum_probs=79.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----CCceEEEcCCCCCCC-C-C-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFDSVP-E-G-D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~~~p-~-~-D 254 (357)
..+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++.+|+.+..+ . . |
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 34555555 5667899999999999999999986 68888998 7787776642 279999999987443 2 3 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+|++..++|++++ ++.+.|||||++++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 9999999999853 578899999999998653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-11 Score=109.55 Aligned_cols=104 Identities=14% Similarity=0.206 Sum_probs=78.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCC-----------------CCCceEE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-----------------YAGVEHV 242 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~v~~~ 242 (357)
...++..+. ..+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+++ ..+++++
T Consensus 94 ~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 94 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 344566565 667789999999999999999998 57789999998 777776654 1479999
Q ss_pred EcCCCCC---CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 243 GGNMFDS---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 243 ~~D~~~~---~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.+|+.+. ++.+ |+|++... .. ..+++++.+.|+|||++++....
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~-~~------~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDML-NP------HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ESCTTCCC-------EEEEEECSS-ST------TTTHHHHGGGEEEEEEEEEEESS
T ss_pred ECChHHcccccCCCCeeEEEECCC-CH------HHHHHHHHHhcCCCcEEEEEeCC
Confidence 9999873 3443 99998432 11 23799999999999999987753
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.2e-11 Score=104.03 Aligned_cols=100 Identities=11% Similarity=0.200 Sum_probs=76.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----------CCceEEEcCCCCC--------CCC
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFDS--------VPE 252 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~--------~p~ 252 (357)
..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++. ++++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45667999999999999999999999989999998 7777665431 2589999999874 333
Q ss_pred -C-CEEEecccccc----------------CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 253 -G-DAILMKWILHC----------------WDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 253 -~-D~i~~~~~lh~----------------~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. |+|+++-.++. ........+++.+.+.|||||+++++.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 99999733322 222336789999999999999999854
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6.9e-11 Score=102.46 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=80.9
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~ 253 (357)
...+++.+. ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .++++..+|+..+++. .
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 345566565 66778999999999999999999987 78999997 7777776642 4689999998555553 2
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++..+++++++ ++.+.|||||++++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 99999999998853 67889999999998654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.12 E-value=5e-11 Score=106.89 Aligned_cols=98 Identities=14% Similarity=0.227 Sum_probs=78.1
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC---CCCC-C-CEEEecccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD---SVPE-G-DAILMKWIL 262 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~p~-~-D~i~~~~~l 262 (357)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|..+ ..+. . |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34999999999999999999999999999999 888887764 2589999999876 3333 3 999986544
Q ss_pred ccCChhH--HHHHHHHHHHhCCCCCEEEEEee
Q 018366 263 HCWDDDH--CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 263 h~~~~~~--~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+...... ..++++.+++.|+|||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4332222 26899999999999999988654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.12 E-value=4.8e-11 Score=104.27 Aligned_cols=94 Identities=16% Similarity=0.369 Sum_probs=72.4
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC--------------CCCCceEEEcCCCCC----CCCC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP--------------SYAGVEHVGGNMFDS----VPEG 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~D~~~~----~p~~ 253 (357)
++..+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ..+++.++.+|+.+. ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4567999999999999999999999999999998 77776553 225799999998873 3333
Q ss_pred --CEEEeccccccCChhHH-----------HHHHHHHHHhCCCCCEEEEEe
Q 018366 254 --DAILMKWILHCWDDDHC-----------LRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~-----------~~~L~~~~~~LkpgG~l~i~e 291 (357)
|.|++. ++++.. ..+++++.++|+|||+|++..
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 666532 233321 489999999999999999953
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.3e-11 Score=108.88 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=82.7
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCCC-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D 254 (357)
.+..... ..+..+|||||||+|.++..+++.. ..+++++|..++++.+++. ++++++.+|+.+ +.+.. |
T Consensus 54 ~i~~~~~-~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 131 (376)
T 3r0q_C 54 AVFQNKH-HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVD 131 (376)
T ss_dssp HHHTTTT-TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEE
T ss_pred HHHhccc-cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcce
Confidence 3444333 4567899999999999999999884 3489999987666666542 569999999988 56644 9
Q ss_pred EEEeccccccCCh-hHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 255 AILMKWILHCWDD-DHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 255 ~i~~~~~lh~~~~-~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+|++..+.|+... .....+++.+.+.|||||++++.+..
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred EEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 9999776666543 34668999999999999999876654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.4e-11 Score=98.34 Aligned_cols=107 Identities=10% Similarity=0.030 Sum_probs=79.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---CCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---VPE 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~p~ 252 (357)
.+++.+....+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+. .+.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 44444432345679999999999999999987 5678999998 7888777642 3689999998762 223
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHH--HhCCCCCEEEEEeecc
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCY--KAIPDNGKVIVMNSIV 294 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~--~~LkpgG~l~i~e~~~ 294 (357)
. |+|++...++. ....++++.+. +.|+|||++++.....
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 3 99999876643 34567777777 8999999999976644
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-10 Score=106.11 Aligned_cols=102 Identities=19% Similarity=0.293 Sum_probs=81.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC-C-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP-E- 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p-~- 252 (357)
..+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +++++.+++. ++++++.+|+.+..+ .
T Consensus 65 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 34555555 56778999999999999999999887 477999998 7788777642 469999999987333 2
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
. |+|++..++|+++ +++.+.|||||++++....
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 3 9999999999985 4678899999999997543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.4e-10 Score=99.55 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=72.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec--hHHHHhCCCC----------------CCceEEEcCCCCC---C-
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSY----------------AGVEHVGGNMFDS---V- 250 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~----------------~~v~~~~~D~~~~---~- 250 (357)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++. +++++...|..+. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 456799999999999999888763 347889998 5666654321 2678886654431 2
Q ss_pred ----CCC-CEEEeccccccCChhHHHHHHHHHHHhCC---C--CCEEEEE
Q 018366 251 ----PEG-DAILMKWILHCWDDDHCLRILKNCYKAIP---D--NGKVIVM 290 (357)
Q Consensus 251 ----p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~Lk---p--gG~l~i~ 290 (357)
+.. |+|++.+++|+. ++...+++.+.++|+ | ||+++++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 233 999999999986 667899999999999 9 9998774
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=103.11 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=77.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC--CEEEeccccccCCh
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDD 267 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~ 267 (357)
.+..+|||||||+|.++..+++..|+.+++++|+ +.+++.+++. +++.+..+|+.+ +++.+ |+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 3567999999999999999999988889999998 7888877653 678999999877 55543 999986653
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
..++++.++|||||++++.++..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 24889999999999999987653
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=107.61 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=80.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC-CC-CC-CEEEecccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS-VP-EG-DAILMKWILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-~p-~~-D~i~~~~~lh~ 264 (357)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+. .+ .. |+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4579999999999999999987 468899998 7788777652 2589999999883 33 23 99999999987
Q ss_pred ---CChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 265 ---WDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 265 ---~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
...+...++++++++.|||||+++++..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 3347788999999999999999999753
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-11 Score=103.20 Aligned_cols=96 Identities=13% Similarity=0.203 Sum_probs=78.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCC-----CCC-CEEEec
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSV-----PEG-DAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-----p~~-D~i~~~ 259 (357)
+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+.. +.. |+|++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 467999999999999999999999889999998 7777776642 46999999987732 233 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
...+ +...+|+++.+.|+|||++++.+...
T Consensus 134 ~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 134 AAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp GGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred CCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 7654 45689999999999999999976543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=101.68 Aligned_cols=103 Identities=15% Similarity=0.244 Sum_probs=80.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCC---------CCCceEEEcCCCC-C
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFD-S 249 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~ 249 (357)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+ +
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345666666 667789999999999999999985 57889999998 777776653 2479999999987 4
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 250 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 250 ~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
++.+ |+|++. .+ +...+|+++.++|+|||++++..+
T Consensus 167 ~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCceeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 5443 999882 22 223789999999999999999775
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-10 Score=100.58 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=76.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---C----------
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---V---------- 250 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~---------- 250 (357)
.+..+|||||||+|..+..+++..| ..+++++|+ +.+++.+++. ++++++.+|+.+. .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 3567999999999999999999987 678999998 7777776542 3589999997652 1
Q ss_pred -----C-CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 251 -----P-EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 251 -----p-~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+ .. |+|++.... ++...+++++.+.|+|||++++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 1 33 999987543 455688999999999999999976544
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-11 Score=103.74 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=77.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---CC-----CC-CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---VP-----EG-DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~p-----~~-D~ 255 (357)
+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+. .+ .. |+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 457999999999999999999988 789999998 7777776542 4699999998652 11 33 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
|++... .++...+++++.+.|||||+|++.+....
T Consensus 144 v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 144 IYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 986443 35567899999999999999999776543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-10 Score=95.00 Aligned_cols=106 Identities=17% Similarity=0.324 Sum_probs=77.0
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCC----------
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSV---------- 250 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~---------- 250 (357)
...++.+.+..+++..+|||+|||+|.++..+++. ..+++++|+.++ ...++++++.+|+.+..
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhh
Confidence 34566776664567789999999999999999988 678999998433 12367999999998732
Q ss_pred ----CCCCEEEeccccccCC----h-----hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 251 ----PEGDAILMKWILHCWD----D-----DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 251 ----p~~D~i~~~~~lh~~~----~-----~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+..|+|++........ + +....+|+.+.++|||||++++...
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 2239999854322111 1 2245789999999999999997543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=5e-10 Score=93.94 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=76.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC---------CeEEEeechHHHHhCCCCCCceEE-EcCCCC-C---
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ---------IKAVNFDLPHVVQDAPSYAGVEHV-GGNMFD-S--- 249 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~v~~~-~~D~~~-~--- 249 (357)
++...+..+.+..+|||+|||+|.++..+++..+. .+++++|+.++. ..++++++ .+|+.+ +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHH
Confidence 44444443456789999999999999999999764 789999985431 23568899 899876 2
Q ss_pred -----CCC-C-CEEEecccccc----CChhH-----HHHHHHHHHHhCCCCCEEEEEee
Q 018366 250 -----VPE-G-DAILMKWILHC----WDDDH-----CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 250 -----~p~-~-D~i~~~~~lh~----~~~~~-----~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.+. . |+|++...+|. ..+.. ...+++++.++|||||++++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 233 3 99998655443 11111 14889999999999999998654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.7e-10 Score=101.56 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=74.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCC-CC---CEEEec--
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVP-EG---DAILMK-- 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p-~~---D~i~~~-- 259 (357)
+..+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++. ++++++.+|++++.+ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4569999999999999999999 9999999999 8888877642 359999999988443 35 999986
Q ss_pred ----------cccccCCh------hHHHHHHHHHH-HhCCCCCEEEE
Q 018366 260 ----------WILHCWDD------DHCLRILKNCY-KAIPDNGKVIV 289 (357)
Q Consensus 260 ----------~~lh~~~~------~~~~~~L~~~~-~~LkpgG~l~i 289 (357)
.+. |.+. ++...+++++. +.|+|||++++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 233 2221 12237899999 99999999997
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=105.47 Aligned_cols=95 Identities=16% Similarity=0.268 Sum_probs=74.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCC-C-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPE-G-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~-~-D~i~~~~~lh 263 (357)
+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ +.|. . |+|++..+.+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 4579999999999999998886 44589999986677666541 569999999988 6663 3 9999986655
Q ss_pred cCC-hhHHHHHHHHHHHhCCCCCEEEE
Q 018366 264 CWD-DDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 264 ~~~-~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
++. ......+++.+.+.|||||+++.
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 432 24466899999999999999974
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.7e-11 Score=100.55 Aligned_cols=95 Identities=7% Similarity=0.124 Sum_probs=75.3
Q ss_pred CceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCC---CC-CCC-CEEEec
Q 018366 195 VERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFD---SV-PEG-DAILMK 259 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~---~~-p~~-D~i~~~ 259 (357)
..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++++++.+|..+ .. +.. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999998 7787777541 479999999876 23 233 999886
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
... .+...+++++.+.|||||+|++-+..+
T Consensus 137 ~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 533 345678999999999999999965544
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-10 Score=99.58 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=76.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC--CCCC-CCEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD--SVPE-GDAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~p~-~D~i~~~~~ 261 (357)
+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++++++.+|..+ +... .|+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 457999999999999999999988 789999998 7888777642 469999999865 2222 488887632
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
..+...+++++.+.|||||++++.+...
T Consensus 136 -----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred -----hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 2455789999999999999999866544
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-10 Score=96.86 Aligned_cols=107 Identities=9% Similarity=0.017 Sum_probs=78.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCC-----
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSV----- 250 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~----- 250 (357)
.+++.+....+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+..
T Consensus 34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 34444432345679999999999999998874 5568999998 7888877652 46999999987621
Q ss_pred -CCC-CEEEeccccccCChhHHHHHHHHH--HHhCCCCCEEEEEeecc
Q 018366 251 -PEG-DAILMKWILHCWDDDHCLRILKNC--YKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 251 -p~~-D~i~~~~~lh~~~~~~~~~~L~~~--~~~LkpgG~l~i~e~~~ 294 (357)
+.. |+|++...++.. ....+++.+ .++|+|||++++.....
T Consensus 113 ~~~~fD~i~~~~~~~~~---~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 113 EKLQFDLVLLDPPYAKQ---EIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp TTCCEEEEEECCCGGGC---CHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cCCCCCEEEECCCCCch---hHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 233 999998876533 234556666 78899999999876543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-10 Score=98.10 Aligned_cols=105 Identities=15% Similarity=0.047 Sum_probs=73.8
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC--C------CceEE--EcCCCCCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFDSVPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~~~p~ 252 (357)
..+.+. ..+.+..+|||+|||+|.++..+++. .+++++|+.++...+++. . ++.++ .+|+.+-.+.
T Consensus 64 ~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~ 139 (265)
T 2oxt_A 64 AWMEER-GYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVE 139 (265)
T ss_dssp HHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCC
Confidence 344444 22456789999999999999999887 579999985464433322 2 68888 8998872133
Q ss_pred C-CEEEeccccccCChhH-----HHHHHHHHHHhCCCCC--EEEEEee
Q 018366 253 G-DAILMKWILHCWDDDH-----CLRILKNCYKAIPDNG--KVIVMNS 292 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~-----~~~~L~~~~~~LkpgG--~l~i~e~ 292 (357)
. |+|++... ++.+... ...+|+.+.++||||| .+++...
T Consensus 140 ~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 140 RTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 3 99999776 4432221 1248999999999999 8888544
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.6e-10 Score=101.06 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=79.3
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C-CCCC-C
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S-VPEG-D 254 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~-~p~~-D 254 (357)
...++ ..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++. .+++++.+|+.+ + .+.. |
T Consensus 111 ~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD 189 (315)
T 1ixk_A 111 PVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFD 189 (315)
T ss_dssp HHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEE
T ss_pred HHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCC
Confidence 33444 56678999999999999999999875 478999998 7777766542 468999999877 3 2333 9
Q ss_pred EEEec------cccccC-------ChhH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 255 AILMK------WILHCW-------DDDH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 255 ~i~~~------~~lh~~-------~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+|++. .++++. +.++ ..++|+++.+.|||||++++.+...
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 99873 334432 2222 1589999999999999999876543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.9e-10 Score=102.25 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=84.0
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVP 251 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p 251 (357)
.+..++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.+++. .++++..+|+.+ +.+
T Consensus 191 la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 191 LAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 3445555555 7778899999999999999999988 8889999998 8888877652 379999999988 433
Q ss_pred C-C-CEEEeccccccCCh--h----HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 252 E-G-DAILMKWILHCWDD--D----HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 252 ~-~-D~i~~~~~lh~~~~--~----~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. . |+|++.-....... . ....+++++++.|||||+++++.
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 3 99999654332111 1 23689999999999999999965
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-10 Score=100.67 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=76.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC--C-C------CCC-
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD--S-V------PEG- 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~------p~~- 253 (357)
.++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++|+++.+|..+ + . +..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3567999999999999999999987 789999998 7777776642 479999999865 2 2 233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|+|++... ..+...+++++.+.|||||+|++-+...
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 99998643 2456789999999999999998866443
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.1e-10 Score=95.99 Aligned_cols=95 Identities=8% Similarity=0.087 Sum_probs=78.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~ 264 (357)
..+.+|||||||.|-++..+. |..+++++|+ +.+++.+++. .++.+...|... +.|.. |++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 457899999999999999877 8889999999 8888877652 457788899988 55554 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
..+++....+ ++.+.|+|++.++...
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 9766665666 8899999998877766
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=98.13 Aligned_cols=103 Identities=20% Similarity=0.163 Sum_probs=70.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-----hHHHHhCCC--C--CCceEEEc-CCCCCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPS--Y--AGVEHVGG-NMFDSVPE- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~--~--~~v~~~~~-D~~~~~p~- 252 (357)
.+.+. ..+++..+|||+|||+|.++..+++. .+++++|+ +.+++.... . ++|.++.+ |+.+..+.
T Consensus 73 ~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~ 148 (305)
T 2p41_A 73 WFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPER 148 (305)
T ss_dssp HHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCC
Confidence 34444 32456689999999999999999987 36888887 433332221 2 56899999 88763233
Q ss_pred CCEEEeccccc---cCChhH-HHHHHHHHHHhCCCCCEEEEE
Q 018366 253 GDAILMKWILH---CWDDDH-CLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 253 ~D~i~~~~~lh---~~~~~~-~~~~L~~~~~~LkpgG~l~i~ 290 (357)
.|+|++...++ +..+.. ...+|+.++++|||||.+++.
T Consensus 149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 39999976653 222221 226899999999999988873
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-10 Score=97.63 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=75.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC------CCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCCCCC-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP------QIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDSVPE- 252 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~p~- 252 (357)
..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..++++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45667999999999999999998765 368999998 777777654 24799999999876554
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+ |+|++...++++. +++.+.|||||++++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 3 9999999998874 578899999999998643
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.1e-10 Score=98.19 Aligned_cols=105 Identities=15% Similarity=0.048 Sum_probs=73.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC--C------CceEE--EcCCCCCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFDSVPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~~~p~ 252 (357)
..+.+. ..+.+..+|||+|||+|.++..+++. .+++++|+.++...+++. . ++.++ .+|+.+-.+.
T Consensus 72 ~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~ 147 (276)
T 2wa2_A 72 AWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPF 147 (276)
T ss_dssp HHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCC
T ss_pred HHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCC
Confidence 344444 22456789999999999999999987 578999984464433322 2 68898 8998762133
Q ss_pred C-CEEEeccccccCChhH-----HHHHHHHHHHhCCCCC--EEEEEee
Q 018366 253 G-DAILMKWILHCWDDDH-----CLRILKNCYKAIPDNG--KVIVMNS 292 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~-----~~~~L~~~~~~LkpgG--~l~i~e~ 292 (357)
. |+|++... +..+... ...+|+.+.++||||| .+++...
T Consensus 148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 3 99999876 4432211 1247999999999999 8888443
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-10 Score=98.11 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=74.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCC-C-C---CC-CCEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFD-S-V---PE-GDAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~-~---p~-~D~i~~ 258 (357)
+..+|||+|||+|.++..++.... .+++++|+ +.+++.+++. ++++++.+|+.+ . . .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 346999999999999998777653 47999998 7888877642 478999999876 2 1 23 499999
Q ss_pred ccccccCChhHHHHHHHHH--HHhCCCCCEEEEEeecc
Q 018366 259 KWILHCWDDDHCLRILKNC--YKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~--~~~LkpgG~l~i~e~~~ 294 (357)
...+| . .....+++.+ .++|+|||++++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 88755 3 4567888888 55799999999876543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-10 Score=94.60 Aligned_cols=95 Identities=17% Similarity=0.082 Sum_probs=72.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C-CceEEEcCCCCCCC------CC-CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFDSVP------EG-DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~p------~~-D~i~~~~ 260 (357)
+..+|||+|||+|.++..+++..++ ++++|+ +.+++.+++. . +++++.+|+.+..+ .. |+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 4579999999999999999998765 888998 7888877652 2 78999999876211 13 9999988
Q ss_pred ccccCChhHHHHHHHHHH--HhCCCCCEEEEEeecc
Q 018366 261 ILHCWDDDHCLRILKNCY--KAIPDNGKVIVMNSIV 294 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~--~~LkpgG~l~i~e~~~ 294 (357)
.+| -..+ ++++.+. +.|+|||++++.....
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCc-hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence 776 2223 4455555 9999999999876644
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=95.10 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=78.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCC-CC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSV-PE- 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-p~- 252 (357)
..++..++ ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. +++++..+|+.+.. +.
T Consensus 81 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 81 FYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 34555555 566789999999999999999998 678999998 7777766542 57899999998854 44
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. |+|++. .+ +...+++++.+.|+|||++++...
T Consensus 158 ~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 158 IFHAAFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp CBSEEEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred cccEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 999972 22 334789999999999999999775
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-10 Score=101.10 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=77.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC---CCCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS---VPEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~p~~-D~i~ 257 (357)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 3567999999999999999998878889999998 777776543 25799999998762 2333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHCWDDDHC--LRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~~~~~~~--~~~L~~~~~~LkpgG~l~i~e 291 (357)
+....+..+.+.. .++++++++.|+|||++++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8554443333332 689999999999999999853
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.6e-10 Score=96.61 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=75.6
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-----CCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCCC----
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDSV---- 250 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~---- 250 (357)
..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ ..+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4566899999999999999999986 5678999998 777776654 247999999988743
Q ss_pred C-C-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 251 P-E-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 251 p-~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+ . . |+|++...++++ ++++.+.|||||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence 2 2 2 999999999876 4678899999999998754
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.7e-10 Score=102.75 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=76.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~-~-D~i 256 (357)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+ ..+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 3567999999999999999999888889999998 788877653 2579999999865 2333 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCCEEEEE
Q 018366 257 LMKWILHCWDDDH--CLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 257 ~~~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++....+..+.+. ..+++++++++|+|||++++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854422211121 368999999999999999985
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8.3e-10 Score=94.91 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=74.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCCCC-C-C-CE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDSVP-E-G-DA 255 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~p-~-~-D~ 255 (357)
..+..+|||+|||+|..+..+++.. |+.+++++|+ +.+++.+++ ..+++++.+|+....+ . . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3456799999999999999999885 6679999998 777776653 2478999999876332 2 3 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|++...++++ ++++.+.|||||++++...
T Consensus 155 i~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVV--------PQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSBBSSC--------CHHHHHTEEEEEEEEEEES
T ss_pred EEECCchHHH--------HHHHHHhcCCCcEEEEEEe
Confidence 9999988776 3578899999999999754
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-10 Score=100.05 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=75.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC---CCCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS---VPEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~p~~-D~i~~ 258 (357)
++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+. .+.. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 467999999999999999998877788999998 788776653 36899999998762 2233 99998
Q ss_pred ccccccCChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 018366 259 KWILHCWDDDH--CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 259 ~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~e 291 (357)
....+..+.+. ..++++++++.|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 55443322111 2578999999999999998853
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-11 Score=105.98 Aligned_cols=134 Identities=14% Similarity=0.058 Sum_probs=93.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~~lh 263 (357)
+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 46799999999999999999874 78999998 8888877642 4799999999873233 3 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEE
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINF 343 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 343 (357)
+.++. ...+.+++++|+|||.+++....... +. ... + -......+++.+++...|...+..
T Consensus 156 ~~~~~--~~~~~~~~~~L~pgG~~i~~~~~~~~-~~------------~~~---~-lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYA--TAETFDIRTMMSPDGFEIFRLSKKIT-NN------------IVY---F-LPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGG--GSSSBCTTTSCSSCHHHHHHHHHHHC-SC------------EEE---E-EETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccchh--hhHHHHHHhhcCCcceeHHHHHHhhC-Cc------------eEE---E-CCCCCCHHHHHHHhccCCCEEEEe
Confidence 87443 34677899999999985543211100 00 000 0 112235677888888777666655
Q ss_pred eecCC
Q 018366 344 ASCVC 348 (357)
Q Consensus 344 ~~~~~ 348 (357)
....+
T Consensus 217 ~~~~~ 221 (241)
T 3gdh_A 217 NFLNN 221 (241)
T ss_dssp EEETT
T ss_pred hhhcC
Confidence 54443
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-10 Score=102.63 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=76.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCC---CCCC-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDS---VPEG-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~---~p~~-D~i~ 257 (357)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+.. |+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 457999999999999999999878889999998 777776543 35799999998762 2233 9999
Q ss_pred ecccccc---CChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHC---WDDDH--CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~---~~~~~--~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+....|. -+.+. ..+++++++++|||||++++..
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 9766554 11111 3689999999999999999864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-10 Score=97.53 Aligned_cols=97 Identities=10% Similarity=0.200 Sum_probs=77.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---CC-----CC-C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---VP-----EG-D 254 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~p-----~~-D 254 (357)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++++++.+|+.+. ++ .. |
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 3567999999999999999999887 789999998 7777766542 5799999998652 21 33 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+|++... ......+++++.+.|+|||.+++.+...
T Consensus 148 ~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 148 VAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 9998543 2455789999999999999999977554
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.6e-10 Score=101.69 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=73.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC--CC-CCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD--SV-PEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-p~~-D~i~ 257 (357)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +. +.. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 3567999999999999999999888889999998 778776653 3679999999865 22 233 9999
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHCWDDD--HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~~~~~--~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+....+..+.. ...+++++++++|+|||++++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 85544322211 23578999999999999999855
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.95 E-value=5.4e-10 Score=94.49 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=74.1
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC--CCCC-C-CEEEeccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD--SVPE-G-DAILMKWILH 263 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~p~-~-D~i~~~~~lh 263 (357)
..+|||+|||+|.++..++.... .+++++|+ +.+++.+++. ++++++.+|+.+ +.+. . |+|++...+|
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 46999999999999998887753 37899998 8888877652 479999999876 3333 3 9999987755
Q ss_pred cCChhHHHHHHHHHHH--hCCCCCEEEEEeecc
Q 018366 264 CWDDDHCLRILKNCYK--AIPDNGKVIVMNSIV 294 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~--~LkpgG~l~i~e~~~ 294 (357)
. .....+++.+.+ +|+|||++++.....
T Consensus 134 -~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 134 -R--GLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp -T--TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred -C--CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 3 445677888876 499999999876543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.4e-10 Score=99.50 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=73.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC----------------CCCCceEEEcCCCCCC--CCC-
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----------------SYAGVEHVGGNMFDSV--PEG- 253 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~~v~~~~~D~~~~~--p~~- 253 (357)
++.+|||||||+|..+..+++. |..+++++|+ +.+++.++ ..++++++.+|..+.. +..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 4579999999999999999998 8789999998 77776654 2357999999976521 333
Q ss_pred CEEEeccccccCChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 DAILMKWILHCWDDDH--CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++....+..+.+. ..++++++++.|+|||.+++..
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865543322222 2688999999999999999863
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.1e-10 Score=97.74 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---C------CCC-
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---V------PEG- 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~------p~~- 253 (357)
.++.+|||||||+|..+..+++..| +.+++.+|+ +.+++.+++. ++++++.+|..+. . +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3567999999999999999999987 789999998 7777776542 4699999998751 2 233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|+|++.. +..+...+++++.+.|+|||++++-+...
T Consensus 149 D~I~~d~-----~~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 149 DFGFVDA-----DKPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred CEEEECC-----chHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 9998753 23556789999999999999998865433
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-10 Score=102.22 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=71.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC---CCCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS---VPEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~p~~-D~i~~ 258 (357)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+.. |+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 457999999999999999999888889999999 777776543 25799999998762 1233 99998
Q ss_pred ccccccCChhHH--HHHHHHHHHhCCCCCEEEEEe
Q 018366 259 KWILHCWDDDHC--LRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 259 ~~~lh~~~~~~~--~~~L~~~~~~LkpgG~l~i~e 291 (357)
...-+..+++.. .+++++++++|+|||++++..
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 554332222222 689999999999999999854
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-10 Score=101.95 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=74.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC---CCCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS---VPEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~p~~-D~i~~ 258 (357)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+.. |+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 457999999999999999998878889999998 777776543 25799999998662 2333 99998
Q ss_pred ccccccCChhHH--HHHHHHHHHhCCCCCEEEEEe
Q 018366 259 KWILHCWDDDHC--LRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 259 ~~~lh~~~~~~~--~~~L~~~~~~LkpgG~l~i~e 291 (357)
...-+..+.+.. .++++++++.|+|||++++..
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 543222111222 689999999999999999853
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.3e-10 Score=97.99 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=76.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCC-----CC-CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVP-----EG-DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p-----~~-D~ 255 (357)
++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++++++.+|+.+ .++ .. |+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 457999999999999999999987 678999998 7777777642 469999999754 111 33 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|++... .++...+++++.+.|+|||+|++.+...
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 987653 2556789999999999999999976654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=97.57 Aligned_cols=103 Identities=16% Similarity=0.263 Sum_probs=74.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~ 252 (357)
...+++.++ ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 345666666 56678999999999999999999854 7788887 7777766541 468999999987 6665
Q ss_pred CCEEEeccccccCChhHHHHHHH--------------HH--HHhCCCCCEEE
Q 018366 253 GDAILMKWILHCWDDDHCLRILK--------------NC--YKAIPDNGKVI 288 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~--------------~~--~~~LkpgG~l~ 288 (357)
.|+|+++... +|+.+....+|. ++ +.+++|||+++
T Consensus 94 fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 94 FDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 5999885444 454444445553 22 36899999653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-09 Score=100.64 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=71.7
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCC-CCCCC-CEEEeccccccC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFD-SVPEG-DAILMKWILHCW 265 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~ 265 (357)
..+|||||||+|.++...++... .+++++|..++++.|++ .++|+++.+|+.+ ++|+. |+|++-.+-+..
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l 162 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGL 162 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTB
T ss_pred CCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccc
Confidence 46899999999999887776643 47899998656666654 2679999999988 67765 999985544443
Q ss_pred Chh-HHHHHHHHHHHhCCCCCEEEE
Q 018366 266 DDD-HCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 266 ~~~-~~~~~L~~~~~~LkpgG~l~i 289 (357)
..+ ....++....+.|||||.++-
T Consensus 163 ~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 163 LHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccchhhhHHHHHHhhCCCCceECC
Confidence 323 566888888899999998874
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-09 Score=95.33 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=78.6
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC-CCCC-CEEEecccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS-VPEG-DAILMKWIL 262 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-~p~~-D~i~~~~~l 262 (357)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+++. .++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45667999999999999999999988889999998 8888877642 4688999999874 2223 999887543
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
...++++++.+.|+|||++++.+...
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 33578999999999999999877654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.9e-09 Score=89.66 Aligned_cols=87 Identities=14% Similarity=0.204 Sum_probs=66.4
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCCCCCCC-CEEEeccccccCChhH
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFDSVPEG-DAILMKWILHCWDDDH 269 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~~~~~ 269 (357)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ +|.. |+|++...+|++.+..
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~~ 127 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKHS 127 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-------
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCch
Confidence 35679999999999999999987 4457999998 8888877653 379999999887 3444 9999999999987655
Q ss_pred HHHHHHHHHHhC
Q 018366 270 CLRILKNCYKAI 281 (357)
Q Consensus 270 ~~~~L~~~~~~L 281 (357)
..++++++.+.+
T Consensus 128 ~~~~l~~~~~~~ 139 (200)
T 1ne2_A 128 DRAFIDKAFETS 139 (200)
T ss_dssp CHHHHHHHHHHE
T ss_pred hHHHHHHHHHhc
Confidence 568899999998
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.5e-10 Score=98.61 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC--C-CCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS--V-PEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~--~-p~~-D~i~~ 258 (357)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. . +.. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 457999999999999999999878889999998 777776543 25799999997652 2 233 99997
Q ss_pred ccccccCChh---HHHHHHHHHHHhCCCCCEEEEE
Q 018366 259 KWILHCWDDD---HCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 259 ~~~lh~~~~~---~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
...-+..... ...++++++++.|+|||++++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 4322211110 1268999999999999999985
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-09 Score=92.75 Aligned_cols=88 Identities=10% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----------CCceEEEcCCCCCCCCC-CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFDSVPEG-DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~~p~~-D~i~~~~~ 261 (357)
.+.+|||||||+|..+..+++. + .+++++|+ +.+++.+++. ++++++.+|..+.. .. |+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEECC-
Confidence 4579999999999999999988 7 89999999 8899888753 47899999987744 43 9999852
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+++ ..+++++++.|+|||.+++..
T Consensus 148 ----~dp--~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 ----EPD--IHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ----CCC--HHHHHHHHTTEEEEEEEEEEE
T ss_pred ----CCh--HHHHHHHHHhcCCCcEEEEEc
Confidence 333 248999999999999999853
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.4e-08 Score=83.42 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=69.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C-CceEEEcCCCCCCCCC-CEEEeccccccC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFDSVPEG-DAILMKWILHCW 265 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~p~~-D~i~~~~~lh~~ 265 (357)
.+..+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++. . +++++.+|+.+ ++.. |+|++.-.+|.+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccc
Confidence 3567999999999999999998743 37899998 7787776542 2 68999999877 3334 999999998887
Q ss_pred ChhHHHHHHHHHHHhC
Q 018366 266 DDDHCLRILKNCYKAI 281 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~L 281 (357)
.......+++++.+.+
T Consensus 126 ~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS 141 (207)
T ss_dssp STTTTHHHHHHHHHHC
T ss_pred cCCchHHHHHHHHHhc
Confidence 6555578899999998
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9e-09 Score=91.38 Aligned_cols=116 Identities=11% Similarity=0.072 Sum_probs=81.7
Q ss_pred CCCCceEEEEcC------CcchHHHHHHhhCC-CCeEEEeechHHHHhCCCCCCceE-EEcCCCC-CCCCC-CEEEeccc
Q 018366 192 FQNVERLVDVGG------GFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPSYAGVEH-VGGNMFD-SVPEG-DAILMKWI 261 (357)
Q Consensus 192 ~~~~~~vLDiG~------G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~-~~~D~~~-~~p~~-D~i~~~~~ 261 (357)
+.+..+|||+|| |+|. ..+++..| +.+++++|+.+. .+++++ +.+|+.+ +.+.. |+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEEcCC
Confidence 566789999999 4476 44566666 689999998433 146899 9999987 44444 99998643
Q ss_pred ccc--------C-ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 262 LHC--------W-DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 262 lh~--------~-~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.+. . ..+....+|+.+++.|||||++++...... ...++.++
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~ 183 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKL 183 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHH
Confidence 221 0 013346899999999999999998543110 12367788
Q ss_pred HHHcCCceeEEe
Q 018366 333 AIAAGFKHINFA 344 (357)
Q Consensus 333 l~~aGf~~~~~~ 344 (357)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 888899877765
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-08 Score=93.88 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=90.1
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCC-C-CEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPE-G-DAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~-~-D~i~~~~ 260 (357)
+.+..+|||+|||+|.++..++...+..+++++|+ +.+++.+++. ++++++.+|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45678999999999999999999988668899998 8888887652 478999999988 5543 3 9999965
Q ss_pred ccccCC-----hhH-HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 261 ILHCWD-----DDH-CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 261 ~lh~~~-----~~~-~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
.++... -++ ..++++.+++.| ||+++++.. +.+.+++.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 543211 112 267888999988 555555431 2455667888
Q ss_pred HcCCceeEEeecC
Q 018366 335 AAGFKHINFASCV 347 (357)
Q Consensus 335 ~aGf~~~~~~~~~ 347 (357)
+.||+..+.....
T Consensus 341 ~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 341 ENGFEIIHHRVIG 353 (373)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCEEEEEEEEE
Confidence 9999988876654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.2e-09 Score=98.03 Aligned_cols=108 Identities=12% Similarity=0.111 Sum_probs=81.5
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-C--CC-CC
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-S--VP-EG 253 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~p-~~ 253 (357)
...++ ..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|+.+ + ++ ..
T Consensus 252 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 252 SIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSC
T ss_pred HHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCC
Confidence 34344 566789999999999999999999877 78999998 666665543 2468999999887 2 44 33
Q ss_pred -CEEEe------ccccccCChh-------HH-------HHHHHHHHHhCCCCCEEEEEeecc
Q 018366 254 -DAILM------KWILHCWDDD-------HC-------LRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 254 -D~i~~------~~~lh~~~~~-------~~-------~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|+|++ ..+++..++. +. .++|+++.+.|||||++++.+...
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99985 4455554332 11 578999999999999999987654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=95.40 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=78.1
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCC-C-CEEEe
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPE-G-DAILM 258 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~-~-D~i~~ 258 (357)
..+++.+. ..+..+|||+|||+|.++..+++.+ +..+++++|+ +.+++.+ .+++++.+|+++..+. . |+|++
T Consensus 29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 34555454 3345699999999999999999886 6778999998 7777766 5799999999884433 3 99999
Q ss_pred cccccc----------CChhHH-----------------HHHHHHHHHhCCCCCEEEEEee
Q 018366 259 KWILHC----------WDDDHC-----------------LRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~~lh~----------~~~~~~-----------------~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+--... .+++.. ..+++++.+.|+|||+++++.+
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 522211 222221 2679999999999999998765
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.79 E-value=5.5e-09 Score=95.78 Aligned_cols=100 Identities=10% Similarity=0.158 Sum_probs=79.3
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCC-----CeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCC-CC-CEEEec
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVP-EG-DAILMK 259 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p-~~-D~i~~~ 259 (357)
.+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.++.. .++.++.+|.+.+.+ .. |+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35679999999999999999988764 67899998 7777776542 258899999988544 33 999998
Q ss_pred cccccCChhHH----------------HHHHHHHHHhCCCCCEEEEEee
Q 018366 260 WILHCWDDDHC----------------LRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 260 ~~lh~~~~~~~----------------~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-.+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 88776654432 2689999999999999998764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=9e-09 Score=89.58 Aligned_cols=104 Identities=8% Similarity=0.188 Sum_probs=73.1
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCC-CC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPE-GD 254 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~-~D 254 (357)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 346676665 5667899999999999999999986 57888888 777776654 3689999999988 6664 35
Q ss_pred EEEeccccccCChhHHHHHH--------------HHHHHhCCCCCEEE
Q 018366 255 AILMKWILHCWDDDHCLRIL--------------KNCYKAIPDNGKVI 288 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L--------------~~~~~~LkpgG~l~ 288 (357)
.+++.+.-++++.+-...++ ..+.+.++|+|++.
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~ 143 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA 143 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred eEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence 45555555555433333443 33667788777543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-08 Score=92.26 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------C-CceEEEcCCCCCC------CCC-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFDSV------PEG-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~D~~~~~------p~~-D~i~ 257 (357)
+..+|||+|||+|.++..+++... +++++|+ +.+++.+++. + +++++.+|+++.. +.. |+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 456999999999999999998643 8999998 7888877652 2 4899999987722 223 9999
Q ss_pred eccc----------cccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 258 MKWI----------LHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 258 ~~~~----------lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.-. ++.. ++...+++++.+.|+|||.+++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 8322 2222 4567999999999999999877554
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.7e-09 Score=93.72 Aligned_cols=103 Identities=10% Similarity=0.062 Sum_probs=75.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CC-----CCC-CEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SV-----PEG-DAI 256 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~-----p~~-D~i 256 (357)
..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++. .+++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456679999999999999999998876 78999998 7777765542 478999999876 22 333 999
Q ss_pred Eec------ccccc---CCh-------hHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 257 LMK------WILHC---WDD-------DHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 257 ~~~------~~lh~---~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
++. .+++. |+. +...++|+++.+.|||||++++.+...
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 876 22221 111 223689999999999999999977544
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.3e-08 Score=87.74 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=93.8
Q ss_pred CceEEEEcCCcchHHHHH--------HhhC-------CCCeEEEeechH-H-------HHhCCC----------C-CC--
Q 018366 195 VERLVDVGGGFGVTLSMI--------TSKY-------PQIKAVNFDLPH-V-------VQDAPS----------Y-AG-- 238 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~----------~-~~-- 238 (357)
..+|+|+|||+|..+..+ .+.+ |...++.-|+|. . +...++ . .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 579999999999887776 2233 778888888753 1 111111 0 01
Q ss_pred -ceEEEcCCCC-CCCCC--CEEEeccccccCCh------------------------------------hHHHHHHHHHH
Q 018366 239 -VEHVGGNMFD-SVPEG--DAILMKWILHCWDD------------------------------------DHCLRILKNCY 278 (357)
Q Consensus 239 -v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~------------------------------------~~~~~~L~~~~ 278 (357)
+.-+++.|.. .+|.+ |+|+++.+||+.++ .+...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345567766 67765 99999999999861 14456799999
Q ss_pred HhCCCCCEEEEEeeccCCCCCCCchh--h-h-hhhhhhhh-hhh-----------c-CCCccCCHHHHHHHHH-HcCCce
Q 018366 279 KAIPDNGKVIVMNSIVPEIPEVSSSA--R-E-TSLLDVLL-MTR-----------D-GGGRERTKKEFTELAI-AAGFKH 340 (357)
Q Consensus 279 ~~LkpgG~l~i~e~~~~~~~~~~~~~--~-~-~~~~~~~~-~~~-----------~-~~~~~~t~~e~~~ll~-~aGf~~ 340 (357)
+.|+|||++++.-...++........ . + ......+. +.. + .--..+|.+|++.+++ +.||++
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I 292 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI 292 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence 99999999999877654421111000 0 0 00001110 000 0 0123479999999998 599998
Q ss_pred eEEee
Q 018366 341 INFAS 345 (357)
Q Consensus 341 ~~~~~ 345 (357)
..+..
T Consensus 293 ~~le~ 297 (374)
T 3b5i_A 293 DKLVV 297 (374)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77643
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-09 Score=105.44 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=79.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----C--CCceEEEcCCCC---CCCC-C-CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----Y--AGVEHVGGNMFD---SVPE-G-DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~---~~p~-~-D~i~~~~~ 261 (357)
.+.+|||||||.|.++..+++. +..++++|. +.+++.|+. . .+|+|..+|+.+ ..+. . |+|+|..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 4679999999999999999997 568999998 778887764 2 258999998876 2333 3 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
|||+++++...-+.++.+.|+++|+.++...+..+
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 99998776555566777888888877776654433
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-09 Score=93.20 Aligned_cols=106 Identities=8% Similarity=0.179 Sum_probs=77.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----CCceEEEcCCCC-CCCC-CCE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD-SVPE-GDA 255 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~p~-~D~ 255 (357)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +++. +.+
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 45666666 5667899999999999999999985 68999998 7788877763 468999999988 5553 333
Q ss_pred EEeccccccCChhHHHHHH--------------HHHHHhCCCCCEEEEEe
Q 018366 256 ILMKWILHCWDDDHCLRIL--------------KNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L--------------~~~~~~LkpgG~l~i~e 291 (357)
+++.+.-++.+.+....++ +.+.+.|+|||++.++.
T Consensus 96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 4444443444433333333 56889999999887654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-08 Score=88.79 Aligned_cols=119 Identities=15% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC--CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG--DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~--D~i~~~~~l 262 (357)
+++.+|||+|||+|.++..+++.. ..+++.+|+ |..++.+++ .++|+++.+|..+-.+.. |.|++...-
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~ 202 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence 467899999999999999998874 468999998 777777664 257999999998743433 988875432
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHI 341 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 341 (357)
...++|..+.+.|||||.|.+.+....+. ......+.++++.++.|+++.
T Consensus 203 ------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcEE
Confidence 22467888889999999998877653221 011235667788889998764
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-08 Score=89.12 Aligned_cols=100 Identities=12% Similarity=0.269 Sum_probs=70.3
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-CCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p~~ 253 (357)
...+++.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 345666665 566789999999999999999987 357888888 777776654 2579999999987 55444
Q ss_pred CEEEeccccccCChhHHHHHH---------------HHHHHhCCCCC
Q 018366 254 DAILMKWILHCWDDDHCLRIL---------------KNCYKAIPDNG 285 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L---------------~~~~~~LkpgG 285 (357)
|+|++... ++++.+....+| ..+.+.++|+|
T Consensus 108 D~Vv~n~p-y~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 108 DVCTANIP-YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp SEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CEEEEcCC-cccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 99988544 456656656666 34668888877
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-08 Score=93.29 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=80.2
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC---CCC-C-C
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS---VPE-G-D 254 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~p~-~-D 254 (357)
...++ ..+..+|||+|||+|..+..+++..++.+++++|+ +..++.+++. .++.++.+|+.+. ++. . |
T Consensus 239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD 317 (429)
T 1sqg_A 239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD 317 (429)
T ss_dssp HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEE
T ss_pred HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCC
Confidence 33444 55678999999999999999999998889999998 6666655432 2578999998872 333 3 9
Q ss_pred EEEe------ccccccCCh-------hHH-------HHHHHHHHHhCCCCCEEEEEeecc
Q 018366 255 AILM------KWILHCWDD-------DHC-------LRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 255 ~i~~------~~~lh~~~~-------~~~-------~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+|++ ..++++.++ ++. .++|+++.+.|||||++++.+...
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9985 234554433 122 488999999999999999987544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-08 Score=95.92 Aligned_cols=102 Identities=9% Similarity=0.085 Sum_probs=76.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C--CCCC-CEEEe-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S--VPEG-DAILM- 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~p~~-D~i~~- 258 (357)
..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++. . +.++.+|+.+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999998865 68999998 7777776542 3 8889998766 2 2333 99985
Q ss_pred ------------ccccccCChhHH-------HHHHHHHHHhCCCCCEEEEEeecc
Q 018366 259 ------------KWILHCWDDDHC-------LRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 259 ------------~~~lh~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
......|+.++. .++|+.+.+.|||||+|+..+-..
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 122223333333 689999999999999999865443
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.3e-08 Score=92.75 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=76.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C--CCCC-CEEEec--
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S--VPEG-DAILMK-- 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~p~~-D~i~~~-- 259 (357)
+..+|||+|||+|..+..+++..+ ...++++|+ +.+++.+++. .++.++.+|..+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 668999999999999999999875 468999998 7777766542 468999999877 2 3344 999871
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 ----WIL-------HCWDDDH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ----~~l-------h~~~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.++ ++|+.++ ..++|+++.++|||||+|++.+...
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 222 2344332 2478999999999999999876544
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.60 E-value=6.7e-07 Score=81.45 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=91.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhh----------------CCCCeEEEeechH-HHHhC-CCCC------C---ceEEEcC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSK----------------YPQIKAVNFDLPH-VVQDA-PSYA------G---VEHVGGN 245 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-~~~~a-~~~~------~---v~~~~~D 245 (357)
++..+|+|+||++|..+..+... .|...++.-|+|. ..+.. +..+ + +.-+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999765543332 4667788889842 22211 1111 2 2335567
Q ss_pred CCC-CCCCC--CEEEeccccccCCh-------------------------------hHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 246 MFD-SVPEG--DAILMKWILHCWDD-------------------------------DHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 246 ~~~-~~p~~--D~i~~~~~lh~~~~-------------------------------~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|.. .+|.+ |+|+++.+||+.++ .+...+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 766 67875 99999999998753 133456999999999999999987
Q ss_pred eccCCCCCCC-----chhhh-hhhhhhhhhhh---------cCCCccCCHHHHHHHHHHcCC-ceeEE
Q 018366 292 SIVPEIPEVS-----SSARE-TSLLDVLLMTR---------DGGGRERTKKEFTELAIAAGF-KHINF 343 (357)
Q Consensus 292 ~~~~~~~~~~-----~~~~~-~~~~~~~~~~~---------~~~~~~~t~~e~~~ll~~aGf-~~~~~ 343 (357)
...++..... ....+ ..+.++..... ..-...++.+|++.+++++|. ++...
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 7665431100 00001 11111111100 001235789999999999964 66554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=6.9e-07 Score=82.04 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=91.4
Q ss_pred CceEEEEcCCcchHHHHHHhh-----------------CCCCeEEEeech-----------H-HHHhC----CCCCCceE
Q 018366 195 VERLVDVGGGFGVTLSMITSK-----------------YPQIKAVNFDLP-----------H-VVQDA----PSYAGVEH 241 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~-~~~~a----~~~~~v~~ 241 (357)
..+|+|+||++|..+..+... .|.+.++.-|+| + ..+.. ....+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999988877665 466778888876 1 11111 11112344
Q ss_pred E---EcCCCC-CCCCC--CEEEeccccccCChhH-------------------------H------------HHHHHHHH
Q 018366 242 V---GGNMFD-SVPEG--DAILMKWILHCWDDDH-------------------------C------------LRILKNCY 278 (357)
Q Consensus 242 ~---~~D~~~-~~p~~--D~i~~~~~lh~~~~~~-------------------------~------------~~~L~~~~ 278 (357)
+ ++.|.. .+|.+ |+|+++.+||+.++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 455655 67775 9999999999875321 1 12377779
Q ss_pred HhCCCCCEEEEEeeccCCCC-CCCch-hhhhhhhhhhhhhh--------c-CCCccCCHHHHHHHHHHcC-CceeEEe
Q 018366 279 KAIPDNGKVIVMNSIVPEIP-EVSSS-ARETSLLDVLLMTR--------D-GGGRERTKKEFTELAIAAG-FKHINFA 344 (357)
Q Consensus 279 ~~LkpgG~l~i~e~~~~~~~-~~~~~-~~~~~~~~~~~~~~--------~-~~~~~~t~~e~~~ll~~aG-f~~~~~~ 344 (357)
+.|+|||++++.-...++.. .+... .....+.++..... + .--..++.+|++.+++++| |++..+.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 99999999999877654420 11100 00111111111100 1 0123479999999999985 7877653
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-07 Score=87.25 Aligned_cols=111 Identities=9% Similarity=0.027 Sum_probs=80.3
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC--------------------------------------CeEE
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV 222 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 222 (357)
.+..++.... +.+...|||.+||+|.++.+.+....+ .+++
T Consensus 189 lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 189 MAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 3445666555 777889999999999999888876544 5689
Q ss_pred Eeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC-CEEEecccccc-C-ChhHHHHHHHHHHHhCCC--CCEEE
Q 018366 223 NFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-DAILMKWILHC-W-DDDHCLRILKNCYKAIPD--NGKVI 288 (357)
Q Consensus 223 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~-~-~~~~~~~~L~~~~~~Lkp--gG~l~ 288 (357)
++|+ +.+++.++.. .+++++.+|+.+ +.+.. |+|+++--... . ..++...+.+.+.+.||+ ||++.
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 9998 8888877652 469999999988 44444 99999743321 1 124556677777777765 99988
Q ss_pred EEee
Q 018366 289 VMNS 292 (357)
Q Consensus 289 i~e~ 292 (357)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8765
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.5e-08 Score=91.78 Aligned_cols=103 Identities=13% Similarity=0.179 Sum_probs=74.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C--CCCC-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S--VPEG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~p~~-D~i~~~ 259 (357)
..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.+++. .++.++.+|..+ . .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999988664 68999998 7777766542 468888898766 2 3334 999863
Q ss_pred c------cccc-------CChhH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 W------ILHC-------WDDDH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~------~lh~-------~~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
- ++.. |+.++ ..++|+++.+.|||||+|+..+-..
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 2 2222 11111 1388999999999999999866543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.2e-07 Score=84.07 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=84.1
Q ss_pred chhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC--------------------------------------C
Q 018366 178 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------I 219 (357)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~ 219 (357)
....+..++.... +.+...|+|.+||+|.++.+.+....+ .
T Consensus 179 ~e~LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 179 KENMAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp CHHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred cHHHHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 3334455666555 778889999999999999988876544 4
Q ss_pred eEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC-CEEEecccccc-C-ChhHHHHHHHHHHHhCCC--CC
Q 018366 220 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-DAILMKWILHC-W-DDDHCLRILKNCYKAIPD--NG 285 (357)
Q Consensus 220 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~-~-~~~~~~~~L~~~~~~Lkp--gG 285 (357)
+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|+++--.+. . ..++...+.+.+.+.||+ ||
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~ 337 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTW 337 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCc
Confidence 6899998 8888877652 469999999988 44444 99998744321 2 235677888888888876 99
Q ss_pred EEEEEee
Q 018366 286 KVIVMNS 292 (357)
Q Consensus 286 ~l~i~e~ 292 (357)
++.++..
T Consensus 338 ~~~iit~ 344 (384)
T 3ldg_A 338 SQFILTN 344 (384)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 9988765
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6.9e-07 Score=81.03 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=104.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC---------------------------CCCceEEEcCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------------------------YAGVEHVGGNM 246 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~D~ 246 (357)
+...|+.+|||.......+...+++++++.+|.|++++..++ .++..++..|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 567999999999999999999888999999999988765432 15688999999
Q ss_pred CC-CC--------C--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhh
Q 018366 247 FD-SV--------P--EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLL 314 (357)
Q Consensus 247 ~~-~~--------p--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 314 (357)
.+ +. + .. .++++-.+|++++.+...++|+.+.+.. |+|.+++.|.+.+.++.... ... ....+..
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~f-g~~-m~~~l~~ 253 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRF-GAI-MQSNLKE 253 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCH-HHH-HHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchH-HHH-HHHHhhc
Confidence 87 22 1 22 7899999999999999999999999987 78888888988763322211 110 0011111
Q ss_pred -hhh--cCCCccCCHHHHHHHHHHcCCc
Q 018366 315 -MTR--DGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 315 -~~~--~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
... .......|.++..+.|.++||+
T Consensus 254 ~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 254 SRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred ccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 100 0012456899999999999997
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.47 E-value=9.3e-08 Score=90.66 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=79.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-------------CCCeEEEeec-hHHHHhCCCC------C--Cce
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPSY------A--GVE 240 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~--~v~ 240 (357)
..+++.+. .....+|+|.|||+|.++..+.+.. +..+++++|+ +.+++.|+.. . ++.
T Consensus 161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 34455444 4456799999999999999888753 3467888988 7777766531 2 678
Q ss_pred EEEcCCCC-CCCCC-CEEEeccccccCChh---------------HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 241 HVGGNMFD-SVPEG-DAILMKWILHCWDDD---------------HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 241 ~~~~D~~~-~~p~~-D~i~~~~~lh~~~~~---------------~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+..+|.+. +.... |+|+++-.++..... ....+++++.+.|||||+++++.+
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 99999988 33334 999998666543211 124789999999999999998775
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=8e-07 Score=83.86 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=69.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC----
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP---- 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p---- 251 (357)
..+++.++ ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. .+++|+.+|+.+.++
T Consensus 276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 34555554 456679999999999999999987 568999998 7888877642 479999999987332
Q ss_pred -C-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 252 -E-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 252 -~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
. . |+|++.---.. ..++++.+.+ ++|++.+++
T Consensus 353 ~~~~fD~Vv~dPPr~g-----~~~~~~~l~~-~~p~~ivyv 387 (433)
T 1uwv_A 353 AKNGFDKVLLDPARAG-----AAGVMQQIIK-LEPIRIVYV 387 (433)
T ss_dssp GTTCCSEEEECCCTTC-----CHHHHHHHHH-HCCSEEEEE
T ss_pred hcCCCCEEEECCCCcc-----HHHHHHHHHh-cCCCeEEEE
Confidence 2 2 99997433222 2245555554 688777766
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-07 Score=85.60 Aligned_cols=111 Identities=15% Similarity=0.082 Sum_probs=81.8
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC--------------------------------------CeEE
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV 222 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 222 (357)
.+..++.... +.+..+|||.+||+|.++.+++....+ .+++
T Consensus 183 lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 183 LAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 4445566555 777889999999999999998876433 5689
Q ss_pred Eeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC-CEEEecccccc-CC-hhHHHHHHHHHHHhCCC--CCEEE
Q 018366 223 NFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-DAILMKWILHC-WD-DDHCLRILKNCYKAIPD--NGKVI 288 (357)
Q Consensus 223 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~-~~-~~~~~~~L~~~~~~Lkp--gG~l~ 288 (357)
++|+ +.+++.++.. .++++..+|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.||+ |+.+.
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 9998 8888888752 368999999988 44444 99999655432 22 24566788888888876 88888
Q ss_pred EEee
Q 018366 289 VMNS 292 (357)
Q Consensus 289 i~e~ 292 (357)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-07 Score=88.10 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=73.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCC------CCC-CEEEec
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSV------PEG-DAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~------p~~-D~i~~~ 259 (357)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. .+++++.+|+++.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999988 457899998 7888777652 34899999987622 233 999984
Q ss_pred cccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 260 WILHCWDD-------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 260 ~~lh~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-..+..+. +....+++++.+.|+|||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 32211111 4456899999999999999998764
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.4e-07 Score=77.94 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=63.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCC-CCCCC--CEE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD-SVPEG--DAI 256 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~p~~--D~i 256 (357)
..+++.++ ..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ ++++. +.+
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~ 98 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELK 98 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEE
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcE
Confidence 45677666 566789999999999999999987 4568888888 7888877654 568999999988 56542 556
Q ss_pred EeccccccCChh
Q 018366 257 LMKWILHCWDDD 268 (357)
Q Consensus 257 ~~~~~lh~~~~~ 268 (357)
++.+.=++.+.+
T Consensus 99 vv~NlPy~i~~~ 110 (249)
T 3ftd_A 99 VVGNLPYNVASL 110 (249)
T ss_dssp EEEECCTTTHHH
T ss_pred EEEECchhccHH
Confidence 666666555433
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.5e-07 Score=80.17 Aligned_cols=79 Identities=11% Similarity=0.248 Sum_probs=61.5
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCC--
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEG-- 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~-- 253 (357)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++..
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~~--~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKNA--KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 346677666 6667899999999999999999983 57777887 777777664 3689999999998 66653
Q ss_pred CEEEeccccc
Q 018366 254 DAILMKWILH 263 (357)
Q Consensus 254 D~i~~~~~lh 263 (357)
|+|+++...+
T Consensus 116 D~Iv~NlPy~ 125 (295)
T 3gru_A 116 NKVVANLPYQ 125 (295)
T ss_dssp SEEEEECCGG
T ss_pred cEEEEeCccc
Confidence 9998765443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=6.8e-08 Score=89.76 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=71.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C--CceEEEcCCCCCC------CCC-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFDSV------PEG-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~------p~~-D~i~ 257 (357)
+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++. . +++++.+|+++.. +.. |+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 45799999999999999999863 237899998 7788777642 2 7999999987622 123 9999
Q ss_pred ecccc-----ccCC--hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 258 MKWIL-----HCWD--DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 258 ~~~~l-----h~~~--~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.-.. .+.. .+...++++.+.+.|+|||.|++...
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 84222 1111 13445788899999999999988654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-07 Score=89.06 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=73.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C-CceEEEcCCCCCC------CCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFDSV------PEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~------p~~-D~i~~ 258 (357)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. . +++++.+|+++.. +.. |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5679999999999999999987 3447899998 7788776642 2 7899999987621 223 99998
Q ss_pred ccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 259 KWILHCWDD-------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~~lh~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.-..+..+. .....+++++.+.|+|||+++++..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 432222111 4566899999999999999988764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.3e-07 Score=85.10 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=71.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC---CCCC-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS---VPEG-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~p~~-D~i~~~~~lh 263 (357)
+..+|||+|||+|.++..+++... .++++|+ +.+++.+++. -..++..+|+++. .+.. |+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 467999999999999999998743 4899998 8888877652 1235778898762 2333 9999854321
Q ss_pred cCCh-------hHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 264 CWDD-------DHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 264 ~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.-+. ....++++.+.+.|+|||+|+++...
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1111 23458899999999999999976653
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=75.58 Aligned_cols=108 Identities=13% Similarity=0.058 Sum_probs=67.3
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeech-HHHHhCCCC----CCceEEEcCCCC-CCCC-C
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPSY----AGVEHVGGNMFD-SVPE-G 253 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~----~~v~~~~~D~~~-~~p~-~ 253 (357)
.+.++.+... +++..+|||+|||+|.++..+++..+-..+.++|+. ......... .++.....++.. .++. .
T Consensus 62 KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~ 140 (277)
T 3evf_A 62 KLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVK 140 (277)
T ss_dssp HHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCC
Confidence 3456666633 667789999999999999988877554455556652 111011110 134444555422 3443 2
Q ss_pred -CEEEeccccc---cCChh-HHHHHHHHHHHhCCCC-CEEEE
Q 018366 254 -DAILMKWILH---CWDDD-HCLRILKNCYKAIPDN-GKVIV 289 (357)
Q Consensus 254 -D~i~~~~~lh---~~~~~-~~~~~L~~~~~~Lkpg-G~l~i 289 (357)
|+|++....+ ++.|+ ....+|+.+.+.|+|| |.+++
T Consensus 141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 9999977555 12222 2235688899999999 99988
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-07 Score=84.48 Aligned_cols=92 Identities=12% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCCCEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEGDAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~D~i~~~~~lh~ 264 (357)
.+..+|||+|||+|.++.. ++ ...+++++|+ +.+++.+++. ++++++.+|+++.....|+|++.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 3567999999999999999 76 4678999998 7788777642 4799999999874422399998432
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.....+++.+.+.|+|||.+++.+..
T Consensus 268 ---~~~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp ---TTGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ---HhHHHHHHHHHHHcCCCCEEEEEEee
Confidence 11237899999999999999997764
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-07 Score=90.46 Aligned_cols=126 Identities=20% Similarity=0.238 Sum_probs=86.1
Q ss_pred hhhhcccCcchHHHHHHHHhhcchhhHHHHHhhccc---CCCCceEEEEcCCcchHHHHHHh---hC-CCCeEEEeechH
Q 018366 156 IFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEG---FQNVERLVDVGGGFGVTLSMITS---KY-PQIKAVNFDLPH 228 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~---~~~~~~vLDiG~G~G~~~~~l~~---~~-p~~~~~~~D~~~ 228 (357)
.|+-|++|+-....|.+++.. .+.+..+. ..+...|+|||||+|-+....++ +. -.+++..++-.+
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 477788888777777775532 22222221 22346899999999988443333 32 234678888755
Q ss_pred HHHhCCC-------CCCceEEEcCCCC-CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 229 VVQDAPS-------YAGVEHVGGNMFD-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 229 ~~~~a~~-------~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
+...+++ .++|+++.+|+.+ ..|+- |+|++-.+=+....|-...+|....+.|||||.++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 5555543 2679999999999 78875 99998776665555767788888889999999764
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-07 Score=87.10 Aligned_cols=96 Identities=15% Similarity=0.076 Sum_probs=73.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------C-CceEEEcCCCCCC------CCC-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFDSV------PEG-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~D~~~~~------p~~-D~i~ 257 (357)
+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++. . +++++.+|+++.. +.. |+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 45799999999999999999874 347899998 7777776542 2 6899999987722 223 9999
Q ss_pred ecccc---------ccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 258 MKWIL---------HCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 258 ~~~~l---------h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.-.. +.. ....+++.++.+.|+|||.+++...
T Consensus 299 ~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGAC--RGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCC--THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 85321 111 4567899999999999999998664
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.9e-07 Score=79.33 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=74.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCCCC---CC-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDSVP---EG-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~p---~~-D~i 256 (357)
+++.+||-||+|.|..++++++..+..+++.+|+ |.+++.+++ .+|++++.+|...-+. .. |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 3678999999999999999999877778888888 888876653 3789999999988332 22 999
Q ss_pred EeccccccCChh---HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 257 LMKWILHCWDDD---HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 257 ~~~~~lh~~~~~---~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.-.. ...... -..++++.+++.|+|||.++....
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 86322 111111 124789999999999999998543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=77.11 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=63.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---CCCceEEEcCCCC-CCCC--C-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---YAGVEHVGGNMFD-SVPE--G-D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~D~~~-~~p~--~-D 254 (357)
+.+++.+. ..+. +|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ ++++ . |
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence 45666666 5666 99999999999999999986 46777776 777776654 2579999999988 5553 2 5
Q ss_pred EEEeccccccCChhHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKN 276 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~ 276 (357)
.|+ .|.=++.+.+-..++|..
T Consensus 113 ~iv-~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 113 LLV-ANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEE-EEECSSCCHHHHHHHHHH
T ss_pred EEE-ecCcccccHHHHHHHhcC
Confidence 554 455555665555555543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.1e-07 Score=90.78 Aligned_cols=96 Identities=10% Similarity=0.091 Sum_probs=73.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCC---CCCC-CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDS---VPEG-DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~---~p~~-D~i~~~~ 260 (357)
+..+|||+|||+|.++..++.... .+++.+|+ +.+++.+++. .+++++.+|+++. .... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 457999999999999999988543 36899998 7788777642 3799999998872 2233 9999843
Q ss_pred c-----------cccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 261 I-----------LHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 261 ~-----------lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. ++.. ....++++++.+.|+|||+|++...
T Consensus 618 P~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2 2222 4567899999999999999997554
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.26 E-value=8.8e-07 Score=77.17 Aligned_cols=90 Identities=8% Similarity=0.068 Sum_probs=61.0
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----CCceEEEcCCCC-CCCC---
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD-SVPE--- 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~p~--- 252 (357)
...+++.+. ..+..+|||||||+|.++. +. ..+..+++++|+ +.+++.+++. ++++++.+|+.+ ++++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 456666665 5667899999999999999 64 454434888888 8888877653 479999999987 4432
Q ss_pred ---CCEEEeccccccCChhHHHHHH
Q 018366 253 ---GDAILMKWILHCWDDDHCLRIL 274 (357)
Q Consensus 253 ---~D~i~~~~~lh~~~~~~~~~~L 274 (357)
.+.+++++.=++.+.+-..+++
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2345555554555444333444
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.1e-07 Score=79.85 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=53.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC--CeEEEeec-hHHHHhCCCC--CCceEEEcCCCC-CCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD-SVP 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~p 251 (357)
..+++.+. ..+..+|||||||+|.++..+++..+. .+++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 45666665 566789999999999999999998764 44777777 8888877653 679999999987 544
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-06 Score=84.75 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=81.5
Q ss_pred hhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh----C---------CCCeEE
Q 018366 156 IFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK----Y---------PQIKAV 222 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~----~---------p~~~~~ 222 (357)
.|+-+.+|+-....|.+++... +.+..++-.+...|||||||+|-++...+++ . ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 4666677776666676654331 1121211123468999999999986432222 1 234788
Q ss_pred Eeec-hHHHHhCCC------CCCceEEEcCCCC-CC------CC-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEE
Q 018366 223 NFDL-PHVVQDAPS------YAGVEHVGGNMFD-SV------PE-GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKV 287 (357)
Q Consensus 223 ~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~------p~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l 287 (357)
+++. +..+...+. .++|+++.+|+.+ .. |+ .|+|++-..=.....|-..++|..+.+.|||||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 8886 333322211 2679999999998 55 44 39999888765555566678898889999999975
Q ss_pred E
Q 018366 288 I 288 (357)
Q Consensus 288 ~ 288 (357)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-06 Score=75.39 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=53.3
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVP 251 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p 251 (357)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 345667666 6667899999999999999999985 57788887 778877654 3689999999988 554
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=5.7e-06 Score=77.60 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=66.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-CEEEeccccccC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-DAILMKWILHCW 265 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~ 265 (357)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. . ++++.+|+.+..+.. |+|++.-.-...
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAGL 366 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTCS
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccch
Confidence 5679999999999999999986 347889998 8888877652 3 899999998844434 999985432222
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. ..+++.+. .|+|||.+++..
T Consensus 367 ~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 367 H----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp C----HHHHHHHH-HHCCSEEEEEES
T ss_pred H----HHHHHHHH-hcCCCcEEEEEC
Confidence 1 23555554 489999888843
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.3e-06 Score=73.66 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=76.5
Q ss_pred CCceEEEEcCCcchHHHHHHhh-------CCC-----CeEEEeec-h---HHHHh-----------CC------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSK-------YPQ-----IKAVNFDL-P---HVVQD-----------AP------------ 234 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~-----------a~------------ 234 (357)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+.. ++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988886654 674 57788885 4 22221 11
Q ss_pred ------C--CCCceEEEcCCCC---CCCC----C-CEEEecc-ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCC
Q 018366 235 ------S--YAGVEHVGGNMFD---SVPE----G-DAILMKW-ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEI 297 (357)
Q Consensus 235 ------~--~~~v~~~~~D~~~---~~p~----~-D~i~~~~-~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~ 297 (357)
. ..++++..+|+.+ ..+. . |+|++-. .-..-++-...++|+.+++.|+|||+|+....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa----- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS----- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC-----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC-----
Confidence 1 1246788899766 2332 3 9988732 11101110135789999999999999885221
Q ss_pred CCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 298 PEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
...+++.|.++||++.++...+
T Consensus 215 ----------------------------a~~vrr~L~~aGF~v~~~~g~~ 236 (257)
T 2qy6_A 215 ----------------------------AGFVRRGLQEAGFTMQKRKGFG 236 (257)
T ss_dssp ----------------------------BHHHHHHHHHHTEEEEEECCST
T ss_pred ----------------------------CHHHHHHHHHCCCEEEeCCCCC
Confidence 1235678888999977654433
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.8e-06 Score=72.23 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=70.0
Q ss_pred chhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCce-EEEc-CCCCCC
Q 018366 178 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVE-HVGG-NMFDSV 250 (357)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~-~~~~-D~~~~~ 250 (357)
+.+.+.++.+.+. +.+..+|||+|||.|.++...++..+-..++++|+ ..+...+.. ..++. +... |+..-.
T Consensus 75 AAfKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~ 153 (282)
T 3gcz_A 75 GSAKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNME 153 (282)
T ss_dssp HHHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSC
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcC
Confidence 3344567777764 77788999999999999999887766556777776 222111111 11222 3322 433212
Q ss_pred CC-CCEEEeccccc----cCChhHHHHHHHHHHHhCCCC--CEEEEE
Q 018366 251 PE-GDAILMKWILH----CWDDDHCLRILKNCYKAIPDN--GKVIVM 290 (357)
Q Consensus 251 p~-~D~i~~~~~lh----~~~~~~~~~~L~~~~~~Lkpg--G~l~i~ 290 (357)
+. .|+|++-...+ ..+......+|+-+.+.|+|| |.+++-
T Consensus 154 ~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K 200 (282)
T 3gcz_A 154 VIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK 200 (282)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 22 39999877665 121122235688888999999 998883
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00011 Score=66.21 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=102.0
Q ss_pred CCceEEEEcCCcchHHHHHHhh-CCCCeEEEeechHHHHhCCC-----------------------------CCCceEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDLPHVVQDAPS-----------------------------YAGVEHVG 243 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~-----------------------------~~~v~~~~ 243 (357)
+...|+-+|||-=.....+... .++++++.+|.|++++.-++ .++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999998888888775 36789999999988764221 25678999
Q ss_pred cCCCC--C---------CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh
Q 018366 244 GNMFD--S---------VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL 310 (357)
Q Consensus 244 ~D~~~--~---------~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~ 310 (357)
.|+.+ . ++.. -++++-.+|.+++.++...+|+.+.+... +|.+++.|.+.+.+ .+...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d-------~fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGD-------RFGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTS-------HHHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCC-------HHHHHH
Confidence 99976 1 2222 68888999999999999999999999875 56777778875432 111111
Q ss_pred hhhhhh--hc-CC-CccCCHHHHHHHHHHcCCceeEEeec
Q 018366 311 DVLLMT--RD-GG-GRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 311 ~~~~~~--~~-~~-~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
--.+.. .. .+ ...++.++..+.|.++||+.++....
T Consensus 242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 111110 00 01 13457899999999999998776654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.4e-05 Score=79.84 Aligned_cols=111 Identities=12% Similarity=-0.005 Sum_probs=76.4
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC------------------------------------------CC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY------------------------------------------PQ 218 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~------------------------------------------p~ 218 (357)
.+..++.... +.+...|+|.+||+|.++.+.+... ++
T Consensus 178 LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 178 LAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 4445666554 7777899999999999998877642 33
Q ss_pred CeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCC--C-C-CEEEeccccc--cCChhHHHHHHHHHHHh---
Q 018366 219 IKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVP--E-G-DAILMKWILH--CWDDDHCLRILKNCYKA--- 280 (357)
Q Consensus 219 ~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p--~-~-D~i~~~~~lh--~~~~~~~~~~L~~~~~~--- 280 (357)
.+++++|+ +.+++.++.. ..+++..+|+.+ ..| . . |+|+++=-.. .-..++...+.+.+.+.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 57899998 8888877652 348999999987 223 2 3 9999873321 11234555555555544
Q ss_pred CCCCCEEEEEee
Q 018366 281 IPDNGKVIVMNS 292 (357)
Q Consensus 281 LkpgG~l~i~e~ 292 (357)
+.|||++.++..
T Consensus 337 ~~~g~~~~ilt~ 348 (703)
T 3v97_A 337 QFGGWNLSLFSA 348 (703)
T ss_dssp HCTTCEEEEEES
T ss_pred hCCCCeEEEEeC
Confidence 458999999764
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6e-06 Score=73.70 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=60.8
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-C--CC-
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-S--VP- 251 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~p- 251 (357)
.+.+++.+. ..+..+|||+|||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+ + ++
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 445666666 56678999999999999999999998889999998 8888777542 579999999866 2 11
Q ss_pred ---CC-CEEEecc
Q 018366 252 ---EG-DAILMKW 260 (357)
Q Consensus 252 ---~~-D~i~~~~ 260 (357)
.. |.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 23 8887643
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.90 E-value=2.8e-05 Score=69.67 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=68.0
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CC--C--CC-CEEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SV--P--EG-DAIL 257 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~--p--~~-D~i~ 257 (357)
..+..+|||+|||+|..+..+++.. +..+++.+|+ +..++.+++. .+++++.+|+.+ +. + .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999875 4578999998 7777665542 478999999876 21 1 22 9888
Q ss_pred ec------cccccC---------ChhHH-------HHHHHHHHHhCCCCCEEEEEeecc
Q 018366 258 MK------WILHCW---------DDDHC-------LRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 258 ~~------~~lh~~---------~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+- .++... +.++. .++|+++.+.++ ||+|+...-..
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 61 222221 11111 357888877776 89888755433
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=8.2e-06 Score=78.95 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=75.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC------------------CCeEEEeec-hHHHHhCCC------CC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP------------------QIKAVNFDL-PHVVQDAPS------YA 237 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~ 237 (357)
..+++.+. .....+|+|.+||+|.++..+.+... ...++++|+ +.++..|+. ..
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 33455444 44567999999999999888776531 236888888 777766653 12
Q ss_pred C-----ceEEEcCCCC-C-CC-C-CCEEEeccccccCCh------------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 238 G-----VEHVGGNMFD-S-VP-E-GDAILMKWILHCWDD------------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 238 ~-----v~~~~~D~~~-~-~p-~-~D~i~~~~~lh~~~~------------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. +.+..+|.+. + .+ . .|+|+++-.+..... ..-..++.++.+.|||||++.++-+
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 2 7889999887 2 22 2 399998654443211 1124789999999999999998754
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.85 E-value=2e-05 Score=68.84 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=66.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-h-------HHHHhCCCC-------CCceEEEcCCCCC---CC---
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P-------HVVQDAPSY-------AGVEHVGGNMFDS---VP--- 251 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~-------~~v~~~~~D~~~~---~p--- 251 (357)
.+..+|||+|||+|..+..+++. ..+++++|+ + .+++.+++. .+++++.+|+.+. ++
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~ 159 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQ 159 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccC
Confidence 34579999999999999999986 467899998 7 777776543 4699999998762 33
Q ss_pred CC-CEEEeccccccCC------------------hhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 252 EG-DAILMKWILHCWD------------------DDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 252 ~~-D~i~~~~~lh~~~------------------~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.. |+|++.-.+++-. +.+...+++.+.++.+ .++++..+..
T Consensus 160 ~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 160 GKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp CCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred CCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 33 9999876555421 1234456666666653 3666665543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.6e-06 Score=75.92 Aligned_cols=97 Identities=9% Similarity=0.053 Sum_probs=66.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC---CC--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS---VP-- 251 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~p-- 251 (357)
.+++.+. .. ..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+. .+
T Consensus 205 ~~~~~~~-~~-~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~ 280 (369)
T 3bt7_A 205 WALDVTK-GS-KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 280 (369)
T ss_dssp HHHHHTT-TC-CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSC
T ss_pred HHHHHhh-cC-CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhc
Confidence 3444444 33 3689999999999999988854 47888998 7888777642 4789999998651 11
Q ss_pred -------------CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 252 -------------EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 252 -------------~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.. |+|++.---. .+.+++.+.|+|+|+++.+..
T Consensus 281 ~~~~~l~~~~~~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 281 REFNRLQGIDLKSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCCTTGGGSCGGGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEES
T ss_pred cccccccccccccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEEC
Confidence 13 8888632111 234456666778899888653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=9.9e-06 Score=74.75 Aligned_cols=91 Identities=9% Similarity=-0.018 Sum_probs=68.5
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---------------------CCceEEEcCCCCC---
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------AGVEHVGGNMFDS--- 249 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~D~~~~--- 249 (357)
..+|||+|||+|..+..+++..+..+++.+|+ +..++.+++. .+++++.+|+.+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 56999999999999999999988888999998 7766655431 1278899998662
Q ss_pred CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 250 VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 250 ~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.+.. |+|++. ... ....+|..+.+.|||||.+++..
T Consensus 128 ~~~~fD~I~lD-P~~-----~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLD-PFG-----SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEEC-CSS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeC-CCC-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence 2333 998853 221 12478999999999999887754
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00011 Score=66.71 Aligned_cols=95 Identities=11% Similarity=0.052 Sum_probs=67.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC-CC--CEEEeccccccCChh
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP-EG--DAILMKWILHCWDDD 268 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p-~~--D~i~~~~~lh~~~~~ 268 (357)
+.++.++||+||++|.++..++++ +.+++++|..++-......++|+++.+|.+...| .. |+|+|-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 457789999999999999999987 5789999975554444556899999999998433 33 9999877653 24
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
....++.+.......++.++.+.
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lK 306 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLK 306 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEE
T ss_pred HhHHHHHHHHhccccceEEEEEE
Confidence 44455555544444445544443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00013 Score=63.69 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=66.9
Q ss_pred hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeech-HHHHhCCC----CCC-ceEEEc-CCCCCCCC
Q 018366 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPS----YAG-VEHVGG-NMFDSVPE 252 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~-v~~~~~-D~~~~~p~ 252 (357)
+.+.++.+. ..+.+..+|||+||++|.++..+++..+-..++++|+. .+...... ..+ +.+..+ |++.-.+.
T Consensus 68 ~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~ 146 (300)
T 3eld_A 68 AKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTE 146 (300)
T ss_dssp HHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCC
Confidence 344556565 43567789999999999999999987654466777762 11111110 012 233322 44332223
Q ss_pred C-CEEEeccccccCCh----h-HHHHHHHHHHHhCCCC-CEEEEE
Q 018366 253 G-DAILMKWILHCWDD----D-HCLRILKNCYKAIPDN-GKVIVM 290 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~----~-~~~~~L~~~~~~Lkpg-G~l~i~ 290 (357)
. |+|++-..-+ -.. + ....+|.-+.+.|+|| |.+++-
T Consensus 147 ~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 147 PSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp CCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred CcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 3 9999866555 221 1 2245688888999999 999884
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00026 Score=60.45 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=64.5
Q ss_pred hhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCC-eEEEeechH---HHHhCCCCCCc---eEEEc-CCCCCC
Q 018366 179 TIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDLPH---VVQDAPSYAGV---EHVGG-NMFDSV 250 (357)
Q Consensus 179 ~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~~~---~~~~a~~~~~v---~~~~~-D~~~~~ 250 (357)
.+.+.+|-+.. -+++..+|||+||+.|.++...++.- ++ .+.+.++.. .........++ .++.+ |+++..
T Consensus 59 ayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~-~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~ 136 (269)
T 2px2_A 59 TAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMK-NVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP 136 (269)
T ss_dssp HHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC
T ss_pred HHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhc-CCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC
Confidence 33456677765 47888999999999999999988852 22 212333211 11111111355 44447 998743
Q ss_pred CC-CCEEEeccccc---cCChhH-HHHHHHHHHHhCCCCC-EEEE
Q 018366 251 PE-GDAILMKWILH---CWDDDH-CLRILKNCYKAIPDNG-KVIV 289 (357)
Q Consensus 251 p~-~D~i~~~~~lh---~~~~~~-~~~~L~~~~~~LkpgG-~l~i 289 (357)
+. .|+|+|-..=. ...|+. ...+|.-+.+.|+||| .+++
T Consensus 137 ~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv 181 (269)
T 2px2_A 137 SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI 181 (269)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 43 39998744221 111121 2245777778999999 7877
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00042 Score=58.28 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=71.6
Q ss_pred hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHh----CCCC--CCceEEEc-CCCCCCCC
Q 018366 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD----APSY--AGVEHVGG-NMFDSVPE 252 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~----a~~~--~~v~~~~~-D~~~~~p~ 252 (357)
+.+.++.+.+. +.+..+|||+||++|.++...+....-.++.++|+-..-.. .+.. +.|+|+.+ |++.-.|.
T Consensus 65 ~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~ 143 (267)
T 3p8z_A 65 AKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPE 143 (267)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCc
Confidence 34567777774 77788999999999999998888765557899997222111 1111 56999999 97663333
Q ss_pred -CCEEEeccccccCChh-----HHHHHHHHHHHhCCCCCEEEE
Q 018366 253 -GDAILMKWILHCWDDD-----HCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 253 -~D~i~~~~~lh~~~~~-----~~~~~L~~~~~~LkpgG~l~i 289 (357)
.|+|+|-..= .-+.+ ...++|.-+.+.|++ |-++|
T Consensus 144 ~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 144 KCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred cccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 4998874433 22222 123467777899999 77777
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0006 Score=60.96 Aligned_cols=144 Identities=9% Similarity=0.001 Sum_probs=93.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC---------CCCceEEEcCCCCCC---------C-CC-
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFDSV---------P-EG- 253 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~---------p-~~- 253 (357)
+...||++|||-=.....+.. .++++++.+|.|.+++..++ .++..++..|+.+.+ . ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456799999998777666542 22478999999988875543 246789999988621 1 11
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh-hhh-hhh-----hcCCCcc-CC
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL-DVL-LMT-----RDGGGRE-RT 325 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~-~t 325 (357)
-++++-.+||++++++...+|+.+.+.+.||+.|++ |...++.+ . ......... ... ... -...... ++
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD-E-WREQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS-H-HHHHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc-c-hhHHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 578889999999999999999999999999888777 44333211 0 000001011 100 000 0001122 36
Q ss_pred -HHHHHHHHHHcCCcee
Q 018366 326 -KKEFTELAIAAGFKHI 341 (357)
Q Consensus 326 -~~e~~~ll~~aGf~~~ 341 (357)
.++..++|.++||+.+
T Consensus 258 ~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCCHHHHHTTTTEEEE
T ss_pred ChHHHHHHHHHCcCccc
Confidence 7899999999999987
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=2e-05 Score=72.80 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=69.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC-------CC-ceEEEcCCCCC----CCCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFDS----VPEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~~----~p~~-D~i~~ 258 (357)
+..+|||++||+|.++..++.+.++ .+++.+|+ +..++.+++. ++ ++++.+|..+. .+.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4579999999999999999998665 46899998 7777766542 34 89999998652 2233 99987
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
-- +.. ...++..+.+.|+|||.|++..
T Consensus 132 DP--~g~----~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP--FGT----PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC--SSC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CcC----HHHHHHHHHHHhCCCCEEEEEe
Confidence 54 111 2368999999999999887765
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00022 Score=70.83 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=67.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC---CCeEEEeec-hHHHHhC--C----C------CCCceEEEcCCCCCC--C-CC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDA--P----S------YAGVEHVGGNMFDSV--P-EG 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~------~~~v~~~~~D~~~~~--p-~~ 253 (357)
.+..+|+|.|||+|.++..+++..+ ..+++++|+ +.+++.+ + . .....+...|+..+. + ..
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999998876 346889998 6666655 1 1 122355666666522 2 22
Q ss_pred -CEEEecccccc-CC-hhH-------------------------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 -DAILMKWILHC-WD-DDH-------------------------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 -D~i~~~~~lh~-~~-~~~-------------------------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|+++=-.-. +. +.. ...++.++.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99998554411 11 111 23478889999999999998765
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00019 Score=55.89 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=60.9
Q ss_pred CCCceEEEEcCCcc-hHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCC---C-CEEEeccccccCC
Q 018366 193 QNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPE---G-DAILMKWILHCWD 266 (357)
Q Consensus 193 ~~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~---~-D~i~~~~~lh~~~ 266 (357)
....+|||||||.| ..+..|++. .+..+++.|+ |..++ ++..|++++..+ . |+|+..+ |
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----P 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----P 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence 35679999999999 588888874 3577888897 44433 888999996652 3 9998766 4
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+.+....+.++.+.. |.-++|.....
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL~~ 124 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPLTG 124 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 456666666766653 57777765543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=3.4e-05 Score=70.33 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=68.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------------CCceEEEcCCCCCC------CC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFDSV------PE 252 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~~~------p~ 252 (357)
++.+||-||+|.|..++++++. |..+++.+|+ |.+++.+++. +|++++.+|....+ ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4579999999999999999985 4468888888 8888876531 46889999976521 12
Q ss_pred C-CEEEeccccc-------cCC-hhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 253 G-DAILMKWILH-------CWD-DDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 253 ~-D~i~~~~~lh-------~~~-~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
. |+|+.-..=. ... ..-..++++.++++|+|||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 9988632110 000 112357899999999999998874
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.6e-05 Score=87.75 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=63.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC-----CeEEEeec-hHHHHhCCCC-C--CceEEEcCCCCC---CCCC-CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-A--GVEHVGGNMFDS---VPEG-DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-~--~v~~~~~D~~~~---~p~~-D~i~~~~ 260 (357)
+..+||+||+|+|..+..+.+...+ ..++..|+ +...+.+++. . .++....|..++ .+.. |+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4579999999999887777665532 24666776 4555555543 1 122222233222 2233 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCce
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKH 340 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 340 (357)
+||.. .+....|+++++.|||||++++.+...... ......++... . ..+....+.++|.++|.++||..
T Consensus 1320 vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~-----~g~~~~~~~~~--~-r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATL--GDPAVAVGNMAATLKEGGFLLLHTLLAGHP-----LGEMVGFLTSP--E-QGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred ccccc--ccHHHHHHHHHHhcCCCcEEEEEecccccc-----ccccccccccc--c-ccCCcccCHHHHHHHHHhCCCce
Confidence 99976 455688999999999999999987542110 00000000000 0 01223457788999999999998
Q ss_pred eEEe
Q 018366 341 INFA 344 (357)
Q Consensus 341 ~~~~ 344 (357)
+...
T Consensus 1390 ~~~~ 1393 (2512)
T 2vz8_A 1390 VALK 1393 (2512)
T ss_dssp EEEE
T ss_pred eeec
Confidence 7664
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00056 Score=59.45 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=70.8
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHH-HH---hCCCC--CCceEEEc-CCCCCCCC-
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV-VQ---DAPSY--AGVEHVGG-NMFDSVPE- 252 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~---~a~~~--~~v~~~~~-D~~~~~p~- 252 (357)
.+.++.+... +.+..+|||+||++|.++...+....-.++.++|+... .+ ..++. .-|.++.+ |++.-.|.
T Consensus 82 KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~ 160 (321)
T 3lkz_A 82 KLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC 160 (321)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence 4556666654 67778999999999999998777765456889997221 11 01111 23888888 87663233
Q ss_pred CCEEEeccccccCChhH-----HHHHHHHHHHhCCCC-CEEEE
Q 018366 253 GDAILMKWILHCWDDDH-----CLRILKNCYKAIPDN-GKVIV 289 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~-----~~~~L~~~~~~Lkpg-G~l~i 289 (357)
.|+|+|--. ..-+.+. ...+|.-+.+.|++| |-++|
T Consensus 161 ~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 161 CDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 499887555 3333322 234677778999998 87777
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.47 E-value=5.1e-05 Score=73.35 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=71.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC---------------CCeEEEeec-hHHHHhCCCC-------CC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP---------------QIKAVNFDL-PHVVQDAPSY-------AG 238 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~~-------~~ 238 (357)
+..+++.+. .. ..+|+|.+||+|.++..+.+..+ ...++++|+ +.++..|+.. .+
T Consensus 234 v~lmv~ll~-p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 234 VTLIVEMLE-PY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHHHHC-CC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHh-cC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 344555444 33 34999999999999888765432 457899998 7777766531 23
Q ss_pred ceEEEcCCCC-C-CCC-C-CEEEecccccc--CChh-------------------------HHHHHHHHHHHhCCCCCEE
Q 018366 239 VEHVGGNMFD-S-VPE-G-DAILMKWILHC--WDDD-------------------------HCLRILKNCYKAIPDNGKV 287 (357)
Q Consensus 239 v~~~~~D~~~-~-~p~-~-D~i~~~~~lh~--~~~~-------------------------~~~~~L~~~~~~LkpgG~l 287 (357)
+.+..+|.+. + .+. . |+|+++=-+.. |..+ .-..++.++.+.|+|||++
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 391 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM 391 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence 4447788776 3 232 3 99998543321 2111 1126899999999999999
Q ss_pred EEEee
Q 018366 288 IVMNS 292 (357)
Q Consensus 288 ~i~e~ 292 (357)
.++-+
T Consensus 392 aiVlP 396 (544)
T 3khk_A 392 ALLLA 396 (544)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88754
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00049 Score=66.36 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=70.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhC---CCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCC-CCC---C-C-CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFD-SVP---E-G-DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~p---~-~-D~ 255 (357)
...+|+|.+||+|.++..+.+.. +...++++|+ +.+...|+.. +++.+..+|.+. ++| . . |+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999999988875 3567899998 7777666531 356799999887 333 2 2 99
Q ss_pred EEeccccc-cCC---------------------hhHHHHHHHHHHHhCC-CCCEEEEEee
Q 018366 256 ILMKWILH-CWD---------------------DDHCLRILKNCYKAIP-DNGKVIVMNS 292 (357)
Q Consensus 256 i~~~~~lh-~~~---------------------~~~~~~~L~~~~~~Lk-pgG~l~i~e~ 292 (357)
|+++=-+. .|. ..+ ..++.++.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEec
Confidence 99752221 111 011 258999999999 9999988764
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.37 E-value=6e-05 Score=65.57 Aligned_cols=77 Identities=9% Similarity=0.186 Sum_probs=53.9
Q ss_pred HHhhcccCCCC--ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHH-------HHhCCC-------C-CCceEEEcCC
Q 018366 185 ILEHYEGFQNV--ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV-------VQDAPS-------Y-AGVEHVGGNM 246 (357)
Q Consensus 185 i~~~l~~~~~~--~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~-~~v~~~~~D~ 246 (357)
+.+.+. .++. .+|||+|||+|..+..++.. +.+++++|. +.+ ++.++. . .+++++.+|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 444443 4444 79999999999999999998 457999998 543 332221 1 3689999998
Q ss_pred CC---CCCCC-CEEEecccccc
Q 018366 247 FD---SVPEG-DAILMKWILHC 264 (357)
Q Consensus 247 ~~---~~p~~-D~i~~~~~lh~ 264 (357)
.+ ..++. |+|++.-.+++
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCC
Confidence 76 23334 99998776655
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00021 Score=49.63 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcc-hHHHHHHHHhcCcceeeeccCCCcceecchhchh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPM-MLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKY 108 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~ 108 (357)
.+-.|++.|...||.|+.+||+.+|+ .+. .+++.|..|...|+|...... .-.|.+|+.+..
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~g-RP~w~LT~~g~~ 74 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTT-PPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSS-SCEEEECHHHHT
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCC-CCCeEeCHhHHh
Confidence 45567888888889999999999999 788 999999999999999864322 238998887763
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00084 Score=59.00 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=65.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhC-----CCCeEEEeec-hH--------------------------HHHhCCC-----
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PH--------------------------VVQDAPS----- 235 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~--------------------------~~~~a~~----- 235 (357)
..+.+|||+|+..|..+..++... ++.+++++|. .. .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346799999999999888877654 4778888884 10 1111111
Q ss_pred ---CCCceEEEcCCCCC---CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 236 ---YAGVEHVGGNMFDS---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 236 ---~~~v~~~~~D~~~~---~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.++|+++.||+.+. .+.. |+|++=.-. + +.....|..+...|+|||.|++-+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y--~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--Y--ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--H--HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--c--ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 26799999998762 3322 777764322 1 445688999999999999888833
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00028 Score=52.71 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=55.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHh--CcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCC
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNK 113 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~ 113 (357)
.+..|+..|.+.|+.|+.+||+.+ ++ .+..+++.|+.|+..|+|... +.+.|++|+.+..++...
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---ANGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---STTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---CCceEEECchHHHHHHHH
Confidence 345688888776799999999999 99 899999999999999999974 245999999998777643
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0016 Score=54.17 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=58.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---------CCCceEEEcCCCCC--------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFDS-------------- 249 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~-------------- 249 (357)
+..+||||||| .-+..+++ .++.+++.+|. ++..+.+++ ..+|+++.+|..+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 46799999985 55555665 45778888886 665555543 24689999995431
Q ss_pred ----------CC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 250 ----------VP--EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 250 ----------~p--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.+ .. |+|++-.- .....+..+.+.|+|||+|++ |.
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv~-DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLLF-DD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEEE-TT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEEE-eC
Confidence 12 22 99987542 113556667799999998855 44
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00087 Score=49.27 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=48.3
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
+|..-.++.|+..|.+ |+.|+.|||+.+|+ .+..+++.|+.|...|+|..........|++++
T Consensus 19 ~l~~~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE-GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp HHCSHHHHHHHHHHHT-CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred HcCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 3444456667777766 58999999999999 888999999999999999975322234566654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0061 Score=60.85 Aligned_cols=146 Identities=11% Similarity=0.115 Sum_probs=102.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC--------CCeEEEeechHHHHhCCC------------------------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP--------QIKAVNFDLPHVVQDAPS------------------------------ 235 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 235 (357)
+...|+-+|||-=.....+...+| +++++.+|.|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999999999988755 788999999887754321
Q ss_pred CCCceEEEcCCCC--CC----------CCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCC
Q 018366 236 YAGVEHVGGNMFD--SV----------PEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVS 301 (357)
Q Consensus 236 ~~~v~~~~~D~~~--~~----------p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~ 301 (357)
.++..++..|+.+ .+ +.. -++++-.+|.+++.++..++|+.+.+ + |+|.+++.|...+..+..+
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 0367899999987 11 222 67888899999999999999999985 4 7888888898766433222
Q ss_pred chhhhhhhhhhhhhhh--cC--CCccCCHHHHHHHHHHcCCceeEEee
Q 018366 302 SSARETSLLDVLLMTR--DG--GGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 302 ~~~~~~~~~~~~~~~~--~~--~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+...+--.+... .. .....+.++..+.|.++||+.+....
T Consensus 265 ----f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~ 308 (695)
T 2zwa_A 265 ----FSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGD 308 (695)
T ss_dssp ----HHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEE
T ss_pred ----HHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceee
Confidence 111111111110 00 12345799999999999998776654
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00087 Score=58.40 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=52.6
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC--CCCceEEEcCCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFD 248 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~D~~~ 248 (357)
..+++++.+. ..+...+||.+||.|..+..+++. +.+++++|. |.+++.+++ .+|+.++.+|+.+
T Consensus 10 Ll~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 3567778776 667789999999999999999998 678999998 777765543 1578999998865
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00032 Score=65.00 Aligned_cols=64 Identities=20% Similarity=0.361 Sum_probs=49.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCCCC-----CCCEEEec
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDSVP-----EGDAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~p-----~~D~i~~~ 259 (357)
...+|||+|||+|..+..+++.. .+++++|+ +.+++.++.+ .+++++.+|+.+.++ ..|+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 35799999999999999998874 58888998 7787776542 368999999987322 23999873
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00061 Score=49.69 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=49.8
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
+|..-.++.|+..|.+ |+.|+.|||+.+|+ .+..+++.|+.|...|+|..........|++++.
T Consensus 19 ~l~~~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (98)
T 3jth_A 19 AMANERRLQILCMLHN-QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSE 82 (98)
T ss_dssp HHCSHHHHHHHHHTTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCH
T ss_pred HcCCHHHHHHHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHH
Confidence 4445566778888887 69999999999999 8999999999999999999753222334665543
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00069 Score=49.35 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=49.4
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 38 TQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 38 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
+..-.++.|+..|..+++.|..+||+.+++ ++..+.+.|+.|...|++.....+....|.+++.
T Consensus 21 l~~~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~ 84 (99)
T 3cuo_A 21 MSHPKRLLILCMLSGSPGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDAQRILYSIKNE 84 (99)
T ss_dssp HCSHHHHHHHHHHTTCCSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCH
T ss_pred hCChHHHHHHHHHHhCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChH
Confidence 334556778888877558999999999999 8999999999999999999753222234665544
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00094 Score=50.94 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=50.3
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
..+|..-.++.|+..|...|+.|+.+||+.+|+ .+..+.+.|+.|...|++.....+....|++++.
T Consensus 36 ~~al~~~~rl~IL~~L~~~~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~ 102 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDE 102 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESCH
T ss_pred HHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHH
Confidence 334555567789999985569999999999999 8999999999999999998642111235665543
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00073 Score=45.55 Aligned_cols=54 Identities=9% Similarity=0.268 Sum_probs=44.3
Q ss_pred HhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 43 QLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 43 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
+..|++.|.+. +++|..|||+.+|+ ++..+.+.+..|...|+|.. +..+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~---~~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSS---PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEE---EETTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEec---CCCceEeeC
Confidence 45678888764 38999999999999 89999999999999999875 235778753
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00084 Score=48.93 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=53.2
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc---CCCcceecchhch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---SGERLYGLTPVSK 107 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~---~~~~~y~~t~~~~ 107 (357)
.++..-.++.|+..|...++.|..+||+.+++ ++..+.+.|+.|+..|++..... .....|.+|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 45666677888888865468999999999999 89999999999999999996421 1123577777664
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0014 Score=47.54 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=50.4
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
++..-.+..|+..| . ++.|..+||+.+++ .+..+.+.|+.|...|+|... . +.|++++.+.
T Consensus 27 ~l~~~~r~~Il~~L-~-~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---~-g~y~l~~~g~ 87 (96)
T 1y0u_A 27 AVTNPVRRKILRML-D-KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---G-ERWVVTDAGK 87 (96)
T ss_dssp HHSCHHHHHHHHHH-H-TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECTTTC
T ss_pred HhCCHHHHHHHHHH-c-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---C-CEEEECCCch
Confidence 44455677788888 5 58999999999999 899999999999999999974 2 5888877643
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00096 Score=50.56 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=52.1
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
.+|..-.++.|+..|.+ ||.|+.+||+.+|+ .+..+++.|+.|...|+|..........|++++..
T Consensus 13 ~al~~~~R~~Il~~L~~-~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~ 78 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR-GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEP 78 (118)
T ss_dssp HHHTSHHHHHHHHHHHT-CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHH
Confidence 34555677778888886 69999999999999 89999999999999999987532223457776644
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0019 Score=44.80 Aligned_cols=58 Identities=14% Similarity=0.270 Sum_probs=47.7
Q ss_pred HHhChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 42 IQLGVFEIIAKAG---KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 42 ~~lglfd~L~~~g---~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
.+..|++.|...+ +.|+.|||+++|+ +...+.+.|+.|...|+|.... ..++.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g-~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence 3566888888876 7999999999999 8899999999999999998753 3356776543
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0026 Score=44.51 Aligned_cols=61 Identities=13% Similarity=0.268 Sum_probs=47.4
Q ss_pred HHhChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 42 IQLGVFEIIAKAG---KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 42 ~~lglfd~L~~~g---~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
.+..|++.|.+.+ +.|+.+||+++|+ ....+.+.|..|...|+|.... ...+.|...+...
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~ 74 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES-SSSCEEEEC----
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHH
Confidence 4556777887776 7999999999999 8889999999999999999753 3357787765544
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.003 Score=44.22 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=39.4
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..|++.|.+.++.|..|||+.+|+ .+..+++.|+.|+..|+|...
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 346777776668999999999999 899999999999999999853
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0022 Score=47.47 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=41.3
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.-.++.|+..|.+ ++.|+.+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 25 ~~~r~~IL~~L~~-~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3455667777775 58999999999999 899999999999999999975
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0017 Score=48.62 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
-.++.|+..|.. |+.|..+||+.+++ ++..+.+.|+.|...|+|..........|.+++.+.
T Consensus 21 ~~r~~IL~~L~~-~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 21 ETRWEILTELGR-ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred hHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence 345667777754 58999999999999 899999999999999999875322223477766543
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.002 Score=46.96 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=51.2
Q ss_pred HhChhHHHHhCCCCCHHHH----HHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 43 QLGVFEIIAKAGKLSAPEI----AAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~l----a~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
++.++..|...++.|..+| |+.+++ ++..+.+.++.|+..|++.+........|.+|+.+..++.
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~ 78 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAI 78 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHH
Confidence 4456777776668999999 899999 8999999999999999999753333446778887776554
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0012 Score=49.17 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=44.6
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
-.++.|+..|.+ |+.|+.|||+.+|+ ++..+.+.|+.|...|+|..........|++++
T Consensus 25 ~~r~~IL~~L~~-~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~ 83 (108)
T 2kko_A 25 GRRLQILDLLAQ-GERAVEAIATATGM----NLTTASANLQALKSGGLVEARREGTRQYYRIAG 83 (108)
T ss_dssp STTHHHHHHHTT-CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESC
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence 344556667765 58999999999999 899999999999999999965321122455543
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.002 Score=51.03 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 34 LPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 34 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
...+|..-.++.|+..|.+ ++.|+.+||+.+++ .+..+.+.|+.|...|+|..........|++++.+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~-~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS-GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG-CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence 3456777788899999986 69999999999999 899999999999999999975322234687776544
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0033 Score=46.99 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCC--HHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLS--APEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE 97 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t--~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 97 (357)
+...+.+.+.+.|...+| ..|.. |+.+ ..||++.+ |+ .+..+.+.|+.|+..|+|.+... ..
T Consensus 16 ~~~~~l~~l~~~wrl~IL---------~~L~~-g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~-r~ 80 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLII---------SVLGN-GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG-QI 80 (111)
T ss_dssp TTSSTHHHHHSTTHHHHH---------HHHTS-SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES-SS
T ss_pred HHHHHHHHHcCccHHHHH---------HHHhc-CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec-Cc
Confidence 344455666666655444 45554 5777 99999999 99 89999999999999999997532 34
Q ss_pred cceecchhchhhhc
Q 018366 98 RLYGLTPVSKYFVS 111 (357)
Q Consensus 98 ~~y~~t~~~~~l~~ 111 (357)
..|++|+.+..+..
T Consensus 81 ~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 81 TTYALTEKGMNVRN 94 (111)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEEECccHHHHHH
Confidence 57999998876553
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0038 Score=47.54 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=46.3
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
.-.++.|+..|.+ |+.++.+||+.+|+ .+..+.+.|+.|...|++.....+....|++++
T Consensus 45 ~~~rl~IL~~L~~-~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~ 104 (122)
T 1r1t_A 45 DPNRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQD 104 (122)
T ss_dssp CHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence 3456677888876 58999999999999 899999999999999999975321123455543
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.014 Score=45.37 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=48.3
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
+..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 36 t~~~~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 36 TPPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHH
Confidence 3566678888888779999999999999 899999999999999999975322222 3667777665443
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.004 Score=56.65 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=69.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------------CCCceEEEcCCCC--C-CCCC-C
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFD--S-VPEG-D 254 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~--~-~p~~-D 254 (357)
..++.+|||+.+|.|.=+.++++..++..++..|+ +.-+...++ ..++.+...|... + .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56778999999999999999999877667888887 333222211 1457888888765 2 2233 8
Q ss_pred EEEe----cc-----------ccccCChhHH-------HHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 255 AILM----KW-----------ILHCWDDDHC-------LRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 255 ~i~~----~~-----------~lh~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
.|++ +. +.+.+..++. .++|.++.+.|||||+|+-..-.+.
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 8874 32 1222332222 4789999999999999887665543
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0091 Score=53.28 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=54.2
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC--CCCceEEEcCCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFD 248 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~D~~~ 248 (357)
..+++++.+. ..+...++|..+|.|..+..+++.. |+.+++++|. |.+++.++. .+|+.++.+++.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567888887 6677899999999999999999985 7889999999 788887643 2577888877654
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0081 Score=44.45 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=52.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC---c
Q 018366 23 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---R 98 (357)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~ 98 (357)
..+.+++.+-|...+ +..|.. |+.+..||++.+ ++ ++..+.+.|+.|+..|+|.+.....+ -
T Consensus 5 ~~~l~~l~~~~~~~I---------L~~L~~-~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~ 70 (107)
T 2hzt_A 5 EATLEVIGGKWKXVI---------LXHLTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKV 70 (107)
T ss_dssp HHHHHHHCSTTHHHH---------HHHHTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEE
T ss_pred HHHHHHHcCccHHHH---------HHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeE
Confidence 344555555555444 444443 589999999999 99 89999999999999999997643221 2
Q ss_pred ceecchhchhhh
Q 018366 99 LYGLTPVSKYFV 110 (357)
Q Consensus 99 ~y~~t~~~~~l~ 110 (357)
.|.+|+.+..+.
T Consensus 71 ~y~LT~~G~~l~ 82 (107)
T 2hzt_A 71 EYELSEYGRSLE 82 (107)
T ss_dssp EEEECTTGGGGH
T ss_pred EEEECccHHHHH
Confidence 588887765443
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.036 Score=48.95 Aligned_cols=121 Identities=18% Similarity=0.266 Sum_probs=70.0
Q ss_pred CCceEEEEcCCcchHHHH----HHhhCCCCeE--EEeechHHHH------------------hCCC--CCC--ceEEEcC
Q 018366 194 NVERLVDVGGGFGVTLSM----ITSKYPQIKA--VNFDLPHVVQ------------------DAPS--YAG--VEHVGGN 245 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~----l~~~~p~~~~--~~~D~~~~~~------------------~a~~--~~~--v~~~~~D 245 (357)
+.-+|+|+|=|+|..... +.+..|+.+. +.++. ..+. .... ..+ +.+..||
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 446899999999976543 3345677654 44442 1110 0000 123 3566788
Q ss_pred CCC---CCCC-C-CEEEeccccccCC-hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcC
Q 018366 246 MFD---SVPE-G-DAILMKWILHCWD-DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDG 319 (357)
Q Consensus 246 ~~~---~~p~-~-D~i~~~~~lh~~~-~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (357)
+.+ .++. . |++++-..=-.-. +=...++++++++.++|||.+.-..
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt---------------------------- 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS---------------------------- 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC----------------------------
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe----------------------------
Confidence 765 2333 2 8887633111111 1122589999999999999876411
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEeecCC
Q 018366 320 GGRERTKKEFTELAIAAGFKHINFASCVC 348 (357)
Q Consensus 320 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 348 (357)
....+++-|++|||++.++-..+.
T Consensus 227 -----aag~VRR~L~~aGF~V~k~~G~g~ 250 (308)
T 3vyw_A 227 -----SSLSVRKSLLTLGFKVGSSREIGR 250 (308)
T ss_dssp -----CCHHHHHHHHHTTCEEEEEECC--
T ss_pred -----CcHHHHHHHHHCCCEEEecCCCCC
Confidence 134577889999999877655443
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0072 Score=41.85 Aligned_cols=43 Identities=26% Similarity=0.334 Sum_probs=39.8
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
|.+.|.+.|.+++.|||+.+++ .+.-++|-|+.|+..|++.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 6778888789999999999999 999999999999999999974
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.013 Score=46.65 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=52.9
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 344558888888779999999999999 899999999999999999986432222 3677777765553
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0045 Score=45.15 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=45.2
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 38 TQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 38 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
|..-.++.|+..|...|+.|+.+||+.+|+ .+..+++.|+.|... ++.....+....|++++.
T Consensus 24 L~~~~Rl~IL~~l~~~~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~ 86 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKHKALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNP 86 (99)
T ss_dssp HCSHHHHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCH
T ss_pred hCCHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChH
Confidence 334456667744443368999999999999 899999999999999 998643222234665543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0096 Score=53.98 Aligned_cols=65 Identities=11% Similarity=0.228 Sum_probs=44.2
Q ss_pred HHHHhhcccCC------CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC---CCCCceEEEcCCCC
Q 018366 183 ERILEHYEGFQ------NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---SYAGVEHVGGNMFD 248 (357)
Q Consensus 183 ~~i~~~l~~~~------~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~~v~~~~~D~~~ 248 (357)
+.|++.+. +. +...|||||+|.|.++..|++....-+++.+++ +..+...+ ..++++++.+|+++
T Consensus 42 ~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 42 NKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp HHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred HHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 45666554 32 347899999999999999998743234555554 43333322 34789999999975
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0069 Score=42.78 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=39.9
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
|.+.|.+.|.+|+.|||+.+++ .+.-++|-|+.|+..|+|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 6778888789999999999999 999999999999999999975
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0099 Score=45.79 Aligned_cols=66 Identities=20% Similarity=0.320 Sum_probs=51.2
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 345567888887778999999999999 89999999999999999997532222 2366777766554
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0071 Score=53.02 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=46.1
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.|...+ +.|+.|||+++|+ ++.-+.|+|..|+..|+|.++ .++.|++.+...
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~---~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS---ADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC---TTSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCcEEehHHHH
Confidence 45788887754 7999999999999 899999999999999999964 347899887643
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0085 Score=41.66 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=46.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
.....|++.|.+. +.|+.+||+++|+ .+..+++.|..|+..|+|.... ..+-.|+++..
T Consensus 17 ~~~~~IL~lL~~~-g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~-~~PP~W~~~~~ 75 (82)
T 1oyi_A 17 EIVCEAIKTIGIE-GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD-DIPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHSSS-TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS-SSSCEEESCC-
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCcceeccC
Confidence 3455677888876 4999999999999 8999999999999999999752 23456766544
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.01 Score=45.75 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=50.5
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 29 ~~~~~iL~~l~~~~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 29 DAQVACLLRIHREPGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHHSTTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 345557778877679999999999999 899999999999999999975322222 266676665444
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.01 Score=46.28 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=52.8
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+...+.++ .+.+|+.+..+..
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 345668888877678999999999999 899999999999999999975322222 4778887776553
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.01 Score=45.75 Aligned_cols=66 Identities=24% Similarity=0.194 Sum_probs=50.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|......+++ .+.+|+.+..+..
T Consensus 35 ~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 35 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence 34557777776568999999999999 999999999999999999975322222 3677777765543
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.011 Score=44.05 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC--
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE-- 97 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~-- 97 (357)
....+.+++.+.|...+| ..|.. |+.+..+||+.+ ++ ++..+.+.|+.|+..|+|.......+
T Consensus 11 ~~~~~l~~l~~~~~~~IL---------~~L~~-~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 11 SINLALSTINGKWKLSLM---------DELFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp HHHHHHHTTCSTTHHHHH---------HHHHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CHHHHHHHHcCccHHHHH---------HHHHh-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 344555555555554443 44554 489999999999 99 89999999999999999997643221
Q ss_pred -cceecchhchhhh
Q 018366 98 -RLYGLTPVSKYFV 110 (357)
Q Consensus 98 -~~y~~t~~~~~l~ 110 (357)
-.|.+|+.+..+.
T Consensus 77 ~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 77 RVEYTLTPEGYALY 90 (112)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEECHhHHHHH
Confidence 2488888876554
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.016 Score=44.47 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCC---
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSG--- 96 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--- 96 (357)
+.....+++.+-|...+|.. |.. |+.+..||++.+ ++ .+..|.+.|+.|+..|+|.+....+
T Consensus 15 pi~~~l~~lg~kW~l~IL~~---------L~~-g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~d~r 80 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYH---------MID-GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQVPP 80 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHH---------HTT-SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred cHHHHHHHHcCcCHHHHHHH---------Hhc-CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCCCCC
Confidence 56777788888887766654 333 589999999999 99 8999999999999999999764322
Q ss_pred Ccceecchhchhhhc
Q 018366 97 ERLYGLTPVSKYFVS 111 (357)
Q Consensus 97 ~~~y~~t~~~~~l~~ 111 (357)
.-.|++|+.+..+..
T Consensus 81 ~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 81 KVEYSLTEFGRTLEP 95 (131)
T ss_dssp EEEEEECTTGGGGHH
T ss_pred eEEEEECHhHHHHHH
Confidence 235889888876654
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.028 Score=42.19 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=51.4
Q ss_pred CCCCCchhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcce
Q 018366 10 PKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 89 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l 89 (357)
|++.-..-....+..+.+++. ++....++.|+..|.+ ++.|..+||+.+++ ++..+.+.|+.|+..|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~il~~L~~-~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv 75 (119)
T 2lkp_A 7 RNRPSAPLDSQAAAQVASTLQ------ALATPSRLMILTQLRN-GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLV 75 (119)
T ss_dssp CCCCCSCCHHHHHHHHHHHHH------HHCCHHHHHHHHHHHH-CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSE
T ss_pred CCccccccCHHHHHHHHHHHH------HhCCHHHHHHHHHHHH-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCE
Confidence 444444444444444433333 2233456777778877 58999999999999 999999999999999999
Q ss_pred eee
Q 018366 90 ECS 92 (357)
Q Consensus 90 ~~~ 92 (357)
...
T Consensus 76 ~~~ 78 (119)
T 2lkp_A 76 VGD 78 (119)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.017 Score=44.55 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=53.0
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC---Ccceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG---ERLYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|++....... ...|.+|+.+..+.
T Consensus 31 ~~~~~iL~~l~~~~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 31 LTRYSILQTLLKDAPLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345568888877668999999999999 8999999999999999999764322 22477888887666
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0097 Score=41.66 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=41.1
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
.+..|++.|.+. ++.|++||++.+ ++ +..-+.|.|+.|+..|+|.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEe
Confidence 455688888764 489999999999 88 8889999999999999999753
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.015 Score=45.30 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=52.2
Q ss_pred HHHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 40 AAIQLGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 40 ~a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
+..++.++..|.. .++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..++.
T Consensus 34 ~~~~~~iL~~l~~~~~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 105 (147)
T ss_dssp HHHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHH
Confidence 4456778888887 679999999999999 89999999999999999997532211 23677777765543
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0094 Score=46.00 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=51.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 38 PTQWAALVRLGETGPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 345668888877669999999999999 899999999999999999975322222 367777766544
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.011 Score=50.79 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=52.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
.++.|+..|.+.++.|..|||+.+++ ++..+.|.|+.|...|++.+. .....|.+|+.+..+..
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK----SEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHH
Confidence 34557777755568999999999999 999999999999999999975 23568999999886654
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0089 Score=41.25 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+|.|+.|||+++|+ .+..+++-|..|+..|+|...
T Consensus 23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 23 APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 59999999999999 788899999999999999975
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.016 Score=41.90 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=47.9
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
|+..+.. | .+..+||..+|+ +++.+++.++.|...|++... .+.|.+|+.+..++.
T Consensus 13 IL~~i~~-~-~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~----~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 13 ILEACKS-G-SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE----GKQYMLTKKGEELLE 68 (95)
T ss_dssp HHHHHTT-C-BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEEEECHHHHHHHH
T ss_pred HHHHHHc-C-CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE----CCeeEEChhHHHHHH
Confidence 4555554 4 899999999999 999999999999999999974 456999999997775
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.011 Score=46.11 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=50.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC---Ccceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG---ERLYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~~~~l~~ 111 (357)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.....+. ...+.+|+.+..+..
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~ 109 (148)
T 3nrv_A 40 MTEWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence 456668888888779999999999999 8999999999999999999753221 234667777665543
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0081 Score=46.70 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=51.1
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+...+.+ ..+.+|+.+..++.
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETT 106 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHH
Confidence 445557788877679999999999999 89999999999999999997532222 24677777765553
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.012 Score=46.10 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=49.6
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 44 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEEGDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 4557788877679999999999999 899999999999999999975322222 366777766554
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.013 Score=45.50 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=44.5
Q ss_pred HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 51 AKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 51 ~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
...++.|..+||+.+++ ++..+.+.++.|+..|+|... ....|.+|+.+..+.
T Consensus 18 ~~~~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 18 EEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIG 70 (142)
T ss_dssp HHHSSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred hhcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHH
Confidence 33358999999999999 899999999999999999964 246788998876554
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.016 Score=44.98 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=48.5
Q ss_pred HhChhHHH-HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 43 QLGVFEII-AKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L-~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
++.++..| ...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..++
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 44577888 65569999999999999 899999999999999999975322122 356666655444
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.013 Score=45.09 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC--
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE-- 97 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~-- 97 (357)
....+.+++.+-|...+ +..|.. |+.+..+|++.+ ++ .+..+.+.|+.|+..|+|.+.....+
T Consensus 24 ~~~~~l~~l~~~w~l~I---------L~~L~~-g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r 89 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLI---------LVALRD-GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPP 89 (131)
T ss_dssp THHHHHHHHHSHHHHHH---------HHHGGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSC
T ss_pred CHHHHHHHHcCCcHHHH---------HHHHHc-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCC
Confidence 34555566655555444 344444 589999999999 79 89999999999999999997543221
Q ss_pred -cceecchhchhhh
Q 018366 98 -RLYGLTPVSKYFV 110 (357)
Q Consensus 98 -~~y~~t~~~~~l~ 110 (357)
-.|.+|+.+..+.
T Consensus 90 ~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 90 HVEYSLTPLGEQVS 103 (131)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEECccHHHHH
Confidence 2589998887555
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.016 Score=45.05 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=50.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|. .++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..++
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 34555778888 679999999999999 899999999999999999975322222 366777766544
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.022 Score=45.34 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
++.|+++||+.+++ ++..++++|..|...|+|.... +.+|.|.++
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~La 87 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR-GAHGGYVLN 87 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-STTCEEEEC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec-CCCCceEec
Confidence 48999999999999 9999999999999999999753 335678753
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.053 Score=52.09 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=68.5
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-------------CCCeEEEeec-hHHHHhCCC------CCCceE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPS------YAGVEH 241 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~~v~~ 241 (357)
++-+++.+. .....+|+|-.||+|.++....+.. ....+.++|+ +.+...++. ...-.+
T Consensus 206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 334455454 4556799999999999987765432 1245788887 666665543 133466
Q ss_pred EEcCCCC-CCC----C--CCEEEecccccc-C--------C-----hhHHHHHHHHHHHhCC-------CCCEEEEEee
Q 018366 242 VGGNMFD-SVP----E--GDAILMKWILHC-W--------D-----DDHCLRILKNCYKAIP-------DNGKVIVMNS 292 (357)
Q Consensus 242 ~~~D~~~-~~p----~--~D~i~~~~~lh~-~--------~-----~~~~~~~L~~~~~~Lk-------pgG~l~i~e~ 292 (357)
..+|.+. +.. . .|+|+.+=-+-. + + .+....++..+.+.|| |||++.++-+
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 7788765 321 1 299987654421 1 0 1112356778888886 7999998764
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.014 Score=45.29 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=50.2
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHCcCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 4457778877678999999999999 899999999999999999975322222 366777766554
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.024 Score=43.33 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++.|.++||+.+++ ++..++++|..|...|+|.... +..+.|.++.
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~-g~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR-GAYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC-CCCCceEeCC
Confidence 48999999999999 9999999999999999998642 2246777543
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.068 Score=41.76 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=46.7
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec--cCCC---cceecchhchhhh
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV--SSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~--~~~~---~~y~~t~~~~~l~ 110 (357)
++.++..| ..++.|..+||+.+++ ++..+.+.++.|+..|+|.... .+.+ -.+.+|+.+..++
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHH-HcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 34478888 5579999999999999 8999999999999999999621 1112 2356666666544
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.013 Score=46.18 Aligned_cols=66 Identities=8% Similarity=0.078 Sum_probs=50.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.+..++.
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 112 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAE 112 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHH
Confidence 45567888877679999999999999 89999999999999999997532112 24677777765543
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0074 Score=46.83 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=50.3
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
.++.++..|...++.|..+||+.+++ ++..+.++++.|+..|+|.+...+++ ..+.+|+.+..+..
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 44557777776679999999999999 99999999999999999997632222 24677777765553
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.027 Score=44.64 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=49.1
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..|.+|+.+..++
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 45568888887679999999999999 89999999999999999997431111 3466777666544
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.015 Score=45.82 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=51.5
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee--eccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC--SVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~--~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+ .....++ .+.+|+.+..+..
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHH
Confidence 45567888887778999999999999 89999999999999999997 4322222 4778887775553
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.015 Score=42.94 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCcceeeeccCCC--
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSSGE-- 97 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~-- 97 (357)
....+.+++.+.|...+|. .|.. |+.+..||++.++ + .+..+.+.|+.|+..|+|.+...+.+
T Consensus 14 ~~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d~r 79 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIF---------QINR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPP 79 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHH---------HHTT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHh-CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 4566667777776665544 4443 5899999999995 9 89999999999999999997543221
Q ss_pred -cceecchhchhhh
Q 018366 98 -RLYGLTPVSKYFV 110 (357)
Q Consensus 98 -~~y~~t~~~~~l~ 110 (357)
..|.+|+.+..+.
T Consensus 80 ~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 80 RVEYSLTPLGEKVL 93 (107)
T ss_dssp EEEEEECHHHHTTH
T ss_pred eeEEEECccHHHHH
Confidence 3588988876544
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.011 Score=50.62 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=48.4
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhh
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYF 109 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l 109 (357)
+.|++.|.+.+ +.|+.|||+++|+ ++.-+.|+|+.|+..|+|.+.. +++.|++++....+
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~--~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG--PAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG--GGCEEEECSHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC--CCCeEEECHHHHHH
Confidence 45677776644 7999999999999 8999999999999999999742 24789988765433
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.051 Score=43.45 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=52.0
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+..
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR 114 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 345567888877679999999999999 899999999999999999975322222 3677777765543
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.047 Score=43.26 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=50.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
.++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+....++ ..+.+|+.+..++.
T Consensus 54 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 54 PKLRLLSSLSAYGELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence 34557888877669999999999999 89999999999999999997532222 24677777765553
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.018 Score=49.68 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=47.0
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
+.|++.|.+.+ +.|+.|||+++|+ ++.-+.|+|+.|+..|++... .++.|++++..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~---~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK---KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC---CCCcEEECHHH
Confidence 45677777644 7999999999999 899999999999999999963 35789987754
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.016 Score=45.02 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=51.9
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .|.+|+.+..+..
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 345667788877668999999999999 899999999999999999975322222 4677777765553
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.011 Score=45.73 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=51.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 345667888877668999999999999 899999999999999999975322222 366777766554
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.011 Score=46.47 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=49.5
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+...++++ .+.+|+.+..++
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 445667888887779999999999999 999999999999999999975322222 366777666544
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.033 Score=44.54 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=45.2
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++|++.+.+..- .+++.|.++||+.+++ ++..+++++..|...|+|... +..+|.|++..
T Consensus 13 yAlr~l~~La~~----~~~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~-rG~~GGy~Lar 72 (162)
T 3k69_A 13 VAVHSILYLDAH----RDSKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGT-VGKNGGYQLDL 72 (162)
T ss_dssp HHHHHHHHHHTT----TTSCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEE-CSTTCEEECCS
T ss_pred HHHHHHHHHHhC----CCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee-cCCCCCeEecC
Confidence 455555544432 1238999999999999 999999999999999999865 23356787654
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.018 Score=44.44 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=50.9
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
.++.++..|...+ +.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.+..++.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence 4555777787765 8999999999999 89999999999999999997643222 23667777765553
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.015 Score=46.12 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=49.4
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
+.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 53 ~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 119 (159)
T 3s2w_A 53 FPFLMRLYREDGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEP 119 (159)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHH
Confidence 446777777679999999999999 899999999999999999976422222 4667777765543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.028 Score=48.94 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=57.6
Q ss_pred CCCceEEEEcC------CcchHHHHHHhhCCC-CeEEEeechHHHHhCCCCCCceEEEcCCCCC-CCCC-CEEEeccc--
Q 018366 193 QNVERLVDVGG------GFGVTLSMITSKYPQ-IKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS-VPEG-DAILMKWI-- 261 (357)
Q Consensus 193 ~~~~~vLDiG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-~p~~-D~i~~~~~-- 261 (357)
+-..+|||+|+ ..|.+ .+.+..|. ..++.+|+.++...+ . .++.+|..+. .+.. |+|++=..
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAPN 180 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYDP 180 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCCT
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCCC
Confidence 45689999996 66773 34445776 689999985544322 2 4488887652 2222 88874221
Q ss_pred --cc-cC----ChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 262 --LH-CW----DDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 262 --lh-~~----~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
=+ +. ...-++.++.=+.+.|+|||.+++-
T Consensus 181 tTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 181 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp TSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 11 00 1124667788888999999999983
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.02 Score=44.90 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=50.7
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..+.
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLTPGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 35557888887679999999999999 89999999999999999997532212 2466777666544
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.022 Score=44.83 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=51.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..+.
T Consensus 44 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 44 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 446667888877668999999999999 89999999999999999997532212 2366777766554
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.029 Score=43.23 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=49.4
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 42 IQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++.++..|...+ +.|..+||+.+++ ++..+.+.++.|+..|+|......+++ .+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 3455777887765 7999999999999 899999999999999999975322222 355666665443
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.019 Score=45.65 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=51.2
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
..++.|+..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..++
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 445668888887779999999999999 89999999999999999997532212 2366777766444
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.028 Score=43.60 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=52.1
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...++ |..+||+.+++ ++..+.+.++.|+..|+|.+...+.++ .+.+|+.+..+..
T Consensus 37 ~~~~~iL~~l~~~~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 37 YLDFSILKATSEEPR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence 345668888888766 99999999999 999999999999999999986422222 4778887775553
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.019 Score=42.07 Aligned_cols=48 Identities=15% Similarity=0.363 Sum_probs=41.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..+..|+..|...++.|..+||+.+++ ++..+.+.|+.|+..|+|...
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 345566777766568999999999999 999999999999999999975
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.023 Score=43.92 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=52.0
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+..
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 106 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence 446668888887678999999999999 889999999999999999975422122 4667777665443
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.025 Score=43.89 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=48.2
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
..++.|+..|...+ .|..+||+.+++ ++..+.+.++.|+..|+|.....+++ ..+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~~-~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 38 NTQEHILMLLSEES-LTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 45667888888865 999999999999 99999999999999999997532112 2466666665444
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.03 Score=44.30 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=48.3
Q ss_pred HHhChhHHH-HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 42 IQLGVFEII-AKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L-~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++.++..| ...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 355588888 45568999999999999 899999999999999999975322122 366777766544
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.009 Score=51.90 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=47.0
Q ss_pred hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.|.+. ++.|+.|||+++|+ ++.-+.|+|..|+..|+|.++ .+.+.|++.+...
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~--~~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQV--EGARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEC--SSSSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEcCHHHH
Confidence 3466666652 48999999999999 999999999999999999974 2347899877643
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.023 Score=44.58 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=51.2
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|......++ ..+.+|+.+..+..
T Consensus 48 ~~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWETDERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 45567888887679999999999999 89999999999999999997532212 24777887775554
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.028 Score=40.36 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=46.0
Q ss_pred hhHHHHhCC-CCCHHHHHHHhCcCCCCCcch-HHHHHHHHhcCcceeeeccC-CCcceecchhchhhh
Q 018366 46 VFEIIAKAG-KLSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECSVSS-GERLYGLTPVSKYFV 110 (357)
Q Consensus 46 lfd~L~~~g-~~t~~~la~~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~~~~-~~~~y~~t~~~~~l~ 110 (357)
++..|...+ +.|..+||+.+++ ++.. +.+.++.|+..|+|...+.+ ....+.+|+.+..+.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence 455566655 7999999999999 8999 99999999999999943221 123467777776554
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.038 Score=43.13 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++.|+++||+.+++ ++..++++|..|...|+|.... ..+|.|.++.
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR-GAKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS-SSSSEEEESS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC-CCCCCeeecC
Confidence 38999999999999 9999999999999999998642 3356787643
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.034 Score=43.57 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC--Ccce
Q 018366 23 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG--ERLY 100 (357)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~~~y 100 (357)
....+++..-|...+|. .|.. |+.+..||++.+++ .+..+.+.|+.|+..|+|.+..... ...|
T Consensus 15 ~~~l~~l~~~w~l~IL~---------~L~~-g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y 80 (146)
T 2f2e_A 15 ARPLDVIGDGWSMLIVR---------DAFE-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQEY 80 (146)
T ss_dssp TTTHHHHCSSSHHHHHH---------HHHT-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCEEE
T ss_pred HHHHHHhCCchHHHHHH---------HHHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCCeEEE
Confidence 34556666666555444 3333 48999999999999 8999999999999999999754211 2368
Q ss_pred ecchhchhhh
Q 018366 101 GLTPVSKYFV 110 (357)
Q Consensus 101 ~~t~~~~~l~ 110 (357)
.+|+.+..+.
T Consensus 81 ~LT~~G~~l~ 90 (146)
T 2f2e_A 81 RLTDKGRALF 90 (146)
T ss_dssp EECHHHHTTH
T ss_pred EECchHHHHH
Confidence 8888876544
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.023 Score=45.53 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=50.0
Q ss_pred HHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 41 AIQLGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
..++.++..|.. .++.|..+||+.+++ ++..+.+.++.|+..|+|.+....++ ..+.+|+.+..++.
T Consensus 53 ~~q~~vL~~L~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 53 QTHWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 345667888876 458999999999999 99999999999999999997532222 24667777665543
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.035 Score=43.71 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=43.6
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++|++.+.+... .. ++.|+++||+.+++ ++..+++++..|...|+|.... + .|.|.++.
T Consensus 15 yAl~~L~~La~~---~~-~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r-G-~GGy~L~~ 73 (149)
T 1ylf_A 15 IAVHILSILKNN---PS-SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR-G-PGGAGLLK 73 (149)
T ss_dssp HHHHHHHHHHHS---CG-GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred HHHHHHHHHHhC---CC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc-C-CCceEeCC
Confidence 455555555432 22 38999999999999 9999999999999999999752 2 67787644
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=94.79 E-value=0.015 Score=44.29 Aligned_cols=66 Identities=9% Similarity=0.142 Sum_probs=50.0
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 38 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 38 EEFAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp HHHHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 345577777765 68999999999999 899999999999999999975322222 3567777665443
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.019 Score=44.86 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=42.0
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+...++++ .+.+|+.+..++
T Consensus 42 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 42 QQGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 344577777765 68999999999999 899999999999999999975322222 356666666544
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.016 Score=45.08 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=51.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..+..
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 345567777776568999999999999 89999999999999999997532212 23677777775554
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=94.61 E-value=0.023 Score=39.58 Aligned_cols=51 Identities=22% Similarity=0.347 Sum_probs=40.3
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..|++.|.+.++.|+.||++.++......+.-+.++|+.|+..|+|...
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 456677777766699999999999731011678899999999999999975
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.12 Score=40.38 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=49.4
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
++.|+..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 4447788877668999999999999 899999999999999999975322122 366777666444
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.04 Score=39.44 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=50.8
Q ss_pred HhChhHHHHhCCCCCHHHHHH-HhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 43 QLGVFEIIAKAGKLSAPEIAA-QLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~-~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
++.|+-.|.+.++.|+.+||+ ..++ +...+.|-++.|...|+|.. .++| +.+|+.+..++.
T Consensus 18 QfsiL~~L~~~~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~---~~~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKKDFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEK---SGDG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHSTTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEE---ETTE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeec---CCCC-eeeCHhHHHHHH
Confidence 455677788877999999999 9999 99999999999999999983 2334 888988886664
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.03 Score=49.53 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=38.7
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 235 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 235 (357)
.+..++..+. .+...|||++||+|..+.++++.. .+++++|+ +.+++.+++
T Consensus 224 l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 224 LAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence 4455666554 356799999999999999988763 57889998 777777654
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.033 Score=43.54 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...+ +.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 44566777786543 7899999999999 899999999999999999975322222 2667777765553
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.05 Score=45.19 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=50.9
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccC-----CCcceecchhch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS-----GERLYGLTPVSK 107 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~~~~ 107 (357)
.+|..-.++.|+..|.. +|.|..+||+.+++ ++..+.+.|+.|...|+|...... ....|++++...
T Consensus 10 kaL~~~~rl~IL~~L~~-~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 34555566777777766 59999999999999 899999999999999999975321 122466666543
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.033 Score=48.20 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=47.7
Q ss_pred hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 44 LGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 44 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
+.|++.|... ++.|+.|||+++|+ ++.-+.|+|..|+..|++.+. ++.|++++....+-
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~----~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS----GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC----CCEEEEcHHHHHHH
Confidence 3466666542 48999999999999 899999999999999999963 48899987754443
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.047 Score=44.71 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=54.0
Q ss_pred HHHHhChhHHHHh--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 40 AAIQLGVFEIIAK--AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 40 ~a~~lglfd~L~~--~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
+..++.++..|.. .++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..++.
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 4556778888875 348999999999999 89999999999999999998643222 34778888876654
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.064 Score=41.33 Aligned_cols=50 Identities=16% Similarity=0.065 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 53 AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 53 ~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
+++.|..+||+.+++ ++..+.+.++.|+..|+|... .+.|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~----~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK----EDGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec----CCeEEEChhHHHHH
Confidence 358999999999999 899999999999999999964 26788888776443
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.083 Score=41.51 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=48.6
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 43 QLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
++.++-.|...+ +.+..+||+.+++ ++..+.++++.|+..|+|.+...++++ ...+|+.+..++.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 444666776533 6788999999999 999999999999999999976433333 3667777665543
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.03 Score=48.53 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=45.3
Q ss_pred hChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.|.. .++.|+.|||+++|+ ++.-+.|+|+.|+..|++... ..+.|++++...
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~---~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR---ADGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCeEEecHHHH
Confidence 345666643 348999999999999 899999999999999999974 223899887643
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.051 Score=40.15 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=38.6
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 43 QLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 43 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
++.|+..+...| +.|..+||+.+|+ ++..+++.|..|...|+|...
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 445666664334 7999999999999 899999999999999999864
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.032 Score=48.53 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=45.6
Q ss_pred hChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 44 LGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 44 lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
+.|++.|.. .++.|+.|||+++|+ ++.-+.|+|..|+..|++.+ + ++.|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~---~-~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL----TRATARRFLLTLVELGYVAT---D-GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE---S-SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe---c-CCEEEEcHHH
Confidence 346666654 248999999999999 89999999999999999996 2 5889987764
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.1 Score=41.10 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 49 IIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 49 ~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
.|..+++.|..+||+.+++ ++..+++.++.|+..|+|... .+..+.+|+.+..+.
T Consensus 48 ~l~~~~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI---PWRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE---TTTEEEECHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe---cCCceEEChhHHHHH
Confidence 4444458999999999999 899999999999999999864 245677887776544
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.039 Score=39.65 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=40.4
Q ss_pred CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccC-CCcceecchhchhhhc
Q 018366 56 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS-GERLYGLTPVSKYFVS 111 (357)
Q Consensus 56 ~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~y~~t~~~~~l~~ 111 (357)
.|..+||+.+++ ++..+.++++.|+..|+|... .+ ....|.+|+.+..+..
T Consensus 31 ~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~-~d~R~~~v~LT~~G~~~~~ 82 (95)
T 2qvo_A 31 VYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE-LEGRTKIIRLTDKGQKIAQ 82 (95)
T ss_dssp EEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE-EETTEEEEEECHHHHHHHH
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC-CCCCeEEEEEChhHHHHHH
Confidence 899999999999 899999999999999999421 11 1225888888775553
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.055 Score=43.20 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=48.0
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHH
Confidence 455577777773 48999999999999 889999999999999999976432222 3667777765553
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.1 Score=37.50 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC-Ccceecchhchhhh
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG-ERLYGLTPVSKYFV 110 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~~y~~t~~~~~l~ 110 (357)
++.+..+||+.+++ +...|.|.|..|+..|+|......+ .+...+|+.+..++
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence 47899999999999 9999999999999999999754321 22356666665444
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.041 Score=43.08 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=45.8
Q ss_pred ChhHHHH--hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 45 GVFEIIA--KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 45 glfd~L~--~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++..|. .+|+.|..+||+.+++ ++..+.++++-|+..|+|.+....+++ ...+|+.+..++
T Consensus 39 ~vL~~L~~~~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 39 EALVLLTFSKSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHTSGGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 3455553 2347999999999999 999999999999999999986433222 366777776554
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.047 Score=45.53 Aligned_cols=66 Identities=15% Similarity=-0.032 Sum_probs=51.1
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.++.|+..|...++.|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 49 ~q~~iL~~L~~~~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 49 NEHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 34557777876669999999999999 899999999999999999975322222 4778888776554
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=93.24 E-value=0.037 Score=41.68 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=38.9
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
+..|+..|...++.|..+||+.++...+..+..+.++|+.|+..|+|.+..
T Consensus 12 ~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 12 EWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 444566665556999999999999300006889999999999999999753
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.078 Score=41.41 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=43.3
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
.++|++.+.+..- . ++ |+++||+.+++ ++..++++|..|...|+|.... . .|.|.+..
T Consensus 9 ~yAl~~L~~La~~----~-~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r-G-~GGy~Lar 66 (145)
T 1xd7_A 9 AVAIHILSLISMD----E-KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA-G-VPGASLKK 66 (145)
T ss_dssp HHHHHHHHHHHTC----S-CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS-S-SSSCEESS
T ss_pred HHHHHHHHHHHhC----C-CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec-C-CCCceecC
Confidence 3455555544321 2 25 99999999999 9999999999999999999752 3 66787643
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.066 Score=40.55 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=40.4
Q ss_pred HHhChhHHHHhCC-C-CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAG-K-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g-~-~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..|+..|.+.+ | .|+.+||+.+++ ++..+.|.|+.|+..|+|.+.
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 3556777777654 4 899999999999 999999999999999999974
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=93.03 E-value=0.1 Score=40.86 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=41.4
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..|+..|.+.++.|..+||+++|+ .+..+.+.++.|...|++...
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 35567888887779999999999999 899999999999999999853
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=92.93 E-value=0.1 Score=40.54 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=40.7
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
+..|++.|.+.++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 7 d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 4567888887779999999999999 89999999999999999985
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.087 Score=41.24 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=41.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.+.++.|..+||+.+|+ .+..+.+.++.|...|++..
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 45678888988778999999999999 99999999999999999985
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=92.84 E-value=0.094 Score=40.65 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=37.4
Q ss_pred ChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIA-KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~-~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.++..|. ..++.|..+||+.+++ ++..+.+.++.|+..|+|...
T Consensus 30 ~il~~L~~~~~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3455553 2358999999999999 899999999999999999975
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.041 Score=44.89 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=51.6
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCcceeeeccC--C---Ccceecchhch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSS--G---ERLYGLTPVSK 107 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~---~~~y~~t~~~~ 107 (357)
.+|.--.++.|+..|.+ ++.|+.+|++.++ + ++..+++.|+.|...|+|..+.+. . ...|++++.+.
T Consensus 18 ~~La~P~Rl~il~~L~~-~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~ 90 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIG-RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG 90 (182)
T ss_dssp HHTTSHHHHHHHHHTTT-SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence 45555678888899986 5999999999996 8 788999999999999999865321 1 23577766543
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.053 Score=43.96 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=48.4
Q ss_pred HHhChhHHHHhCCC---CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGK---LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~---~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
.++.|+..|...++ .|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.+..++
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 35557888877543 899999999999 89999999999999999997532112 2366777766544
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.12 Score=40.98 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=41.2
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.+.++.|..|||+++|+ .+..+.+.++.|...|++..
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 34567888888779999999999999 89999999999999999985
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.062 Score=38.98 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=40.2
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.++.|+..|-+.|+.|+.||++.++...+..+.-+.++|+-|+..|+|.+.
T Consensus 36 ~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 345677777766699999999999851111467899999999999999975
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=92.02 E-value=0.46 Score=35.46 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=53.3
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhC--------cCCCCCc-chHHHHHHHHhcCcceeeeccC-C---Ccceecc
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQ--------AQNVKAP-MMLDRMLRLLVSHRVLECSVSS-G---ERLYGLT 103 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~--------~~~~~~~-~~l~~~L~~L~~~g~l~~~~~~-~---~~~y~~t 103 (357)
++....++-|+..|.. +|.+..+|++.+. + .+ ..+.+.|+-|+..|+|...... + ...|++|
T Consensus 9 ~~~~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT 83 (118)
T 2esh_A 9 FRGWWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRIT 83 (118)
T ss_dssp HHHHHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEEC
T ss_pred cccchHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEC
Confidence 3455566777788877 5999999999983 5 78 8999999999999999876422 1 2358999
Q ss_pred hhchhhhc
Q 018366 104 PVSKYFVS 111 (357)
Q Consensus 104 ~~~~~l~~ 111 (357)
+.+...+.
T Consensus 84 ~~G~~~l~ 91 (118)
T 2esh_A 84 PQGKLYLR 91 (118)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 98875553
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.12 Score=40.45 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=41.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.+.++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 34567888887779999999999999 89999999999999999984
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=91.94 E-value=0.035 Score=47.13 Aligned_cols=68 Identities=6% Similarity=0.127 Sum_probs=52.4
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC------Ccceecchhch
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG------ERLYGLTPVSK 107 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~------~~~y~~t~~~~ 107 (357)
..+|..-.++.|+..|.. ||.|..+||+.+|+ .+..+.+.|+.|...|+|......+ ...|++++.+.
T Consensus 6 lkaL~~~~R~~IL~~L~~-g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC-MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT-TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 345555667778888886 69999999999999 8999999999999999999732221 12477766554
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=91.85 E-value=0.14 Score=40.18 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=41.1
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.+.++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 34567888888779999999999999 89999999999999999995
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=91.80 E-value=0.14 Score=42.91 Aligned_cols=52 Identities=27% Similarity=0.347 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 53 AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 53 ~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
.++.+..+||+.+++ .+..+.+.++.|+..|+|... ....+.+|+.+..+..
T Consensus 18 ~~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLVS 69 (214)
T ss_dssp CSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHH
T ss_pred CCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHHH
Confidence 458999999999999 899999999999999999974 2467888888875553
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.16 Score=39.84 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=41.3
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.+.++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 45568888888779999999999999 89999999999999999985
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.18 Score=40.51 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=41.4
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.++++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 45568888888778999999999999 89999999999999999984
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=91.62 E-value=0.15 Score=37.09 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 53 AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 53 ~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.++.|..+||+.+|+ ++..+.+.|+.|+..|++...
T Consensus 34 ~~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 34 EKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 458999999999999 899999999999999999975
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.14 Score=34.57 Aligned_cols=55 Identities=13% Similarity=0.264 Sum_probs=45.2
Q ss_pred HHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 42 IQLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 42 ~~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
.+-.|++.|.+.| |++..+||+++|+ +..-+...+..|-..|.|..- ..-.|.++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP---kRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT---SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---ETTEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC---CCceeeCC
Confidence 3556778888765 9999999999999 899999999999999999852 34567654
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.16 Score=40.45 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=41.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|++.|.++++.|..+||+++|+ .+..+.+-++.|...|++..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 45678899998889999999999999 89999999999999999984
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=91.44 E-value=0.22 Score=35.43 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=38.9
Q ss_pred HhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 43 QLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 43 ~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
++.|+..|... .+++..+||+++++ +..-+.+.|+.|+..|+|.+.
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 34566777753 37999999999999 899999999999999999954
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=91.40 E-value=0.3 Score=38.20 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=50.8
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCcceeeeccC----C----Ccceecchhchhhh
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSS----G----ERLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~----~----~~~y~~t~~~~~l~ 110 (357)
.+..|+..|... +..|+++|++.++ + .+.-+.+.|+.|+..|+|...... + ...|++|+.+...+
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 566677777553 2579999999988 8 889999999999999999964221 1 12699999998665
Q ss_pred c
Q 018366 111 S 111 (357)
Q Consensus 111 ~ 111 (357)
.
T Consensus 106 ~ 106 (151)
T 3u1d_A 106 R 106 (151)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=91.32 E-value=0.23 Score=40.80 Aligned_cols=51 Identities=8% Similarity=0.215 Sum_probs=44.7
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
++....+..|+..|.+ |+.|..+||+.+|+ .+..+.+.++.|...|++...
T Consensus 16 ~l~d~~~~~IL~~L~~-~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3445667778889985 69999999999999 899999999999999999975
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=91.30 E-value=0.16 Score=39.11 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=39.8
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
+..|+..|..+++.|..+||+.+|+ .+..+.+.++.|...|++..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 4557777877678999999999999 89999999999999999984
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=91.15 E-value=0.16 Score=38.72 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..|..+||+++++ .+.-+.+.++.|+..|+|...
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999974
|
| >2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39 | Back alignment and structure |
|---|
Probab=90.60 E-value=0.24 Score=38.12 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=40.7
Q ss_pred HHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..|+..|.+ .++.|..+|++.++.+.+.++.-+.++|+-|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 46667778876 4699999999999821011788999999999999999975
|
| >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
|---|
Probab=90.21 E-value=0.24 Score=41.79 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=43.8
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
+.|..++|+++++ .+..+++.++.|+..|++.+...+....+.+|+.+..+..
T Consensus 27 ~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 27 YLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY 79 (230)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHH
Confidence 6899999999999 9999999999999999999742222456888888876664
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=90.17 E-value=0.23 Score=42.60 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=50.4
Q ss_pred HHHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|...+ +.|..+||+.+++ ++..+.++++-|+..|+|.+...++++ ...+|+.+..++
T Consensus 158 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 158 FVEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 34556778887653 4899999999999 999999999999999999986433333 355666666544
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=90.11 E-value=0.27 Score=33.30 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=36.0
Q ss_pred hHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 47 FEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 47 fd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
++.|..++..|+.+||.++|+ ...-+.|.|..|...|.|...
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCCCcchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 345666445999999999999 888999999999999999975
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.01 E-value=0.25 Score=40.57 Aligned_cols=39 Identities=28% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 50 IAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 50 L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+.+.| |.|..|||+++|+ ....+.+.|+.|+..|++...
T Consensus 18 ~~~~g~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 18 IEKNGYPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHSSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHhCCCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 34434 8999999999999 666899999999999999963
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=89.92 E-value=0.56 Score=40.75 Aligned_cols=98 Identities=13% Similarity=-0.023 Sum_probs=68.6
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC----CCC--C-CCEEEecccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD----SVP--E-GDAILMKWIL 262 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~----~~p--~-~D~i~~~~~l 262 (357)
...+||+=+|+|.++.+.++. .-+++.+|. +..++..++ ..+++++..|.+. ..| . .|+|++==-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 456899999999999999984 357888887 666655554 2579999999655 112 2 3999874433
Q ss_pred ccCChhHHHHHHHHHHHh--CCCCCEEEEEeeccCC
Q 018366 263 HCWDDDHCLRILKNCYKA--IPDNGKVIVMNSIVPE 296 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~--LkpgG~l~i~e~~~~~ 296 (357)
.. ..+..++++.+.+. +.|+|.++++-++...
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNK 203 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHCTTSEEEEEEEESSH
T ss_pred CC--CcHHHHHHHHHHHhCccCCCeEEEEEEeccch
Confidence 32 13556667666653 4689999998887643
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.82 E-value=0.46 Score=36.18 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=42.7
Q ss_pred HHHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 39 QAAIQLGVFEIIAKA-GKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 39 ~~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
.+..+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+..
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEE
Confidence 456677788888754 389999999998 56 7788999999999999999764
|
| >1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A | Back alignment and structure |
|---|
Probab=89.75 E-value=0.21 Score=37.51 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=40.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..|+..|.+.||.|..+||+.++...+..+.-+.++|+-|+..|+|.+.
T Consensus 11 ~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 456677777776799999999999741111678899999999999999975
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=89.61 E-value=0.26 Score=38.38 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=40.3
Q ss_pred HhChhHHHHhC-----CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 43 QLGVFEIIAKA-----GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~-----g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|... .+.++ ...+|+.+..++
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~-~~~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM-AGADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee-CCCCCCeeEEEECHHHHHHH
Confidence 34455566542 25899999999999 999999999999999999542 22222 355666665444
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=89.45 E-value=0.72 Score=34.37 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=53.9
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHh------CcCCCCCcchHHHHHHHHhcCcceeeeccC-----CCcceecch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSS-----GERLYGLTP 104 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~ 104 (357)
+++.-.+++=|+..|.+ +|.+--+|++.+ ++ .+..+...|+-|+..|+|+..... ....|++|+
T Consensus 6 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 80 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR-RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNE 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECH
T ss_pred HHHHChHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECH
Confidence 45555566667777877 599999999997 56 888999999999999999975321 123599999
Q ss_pred hchhhhc
Q 018366 105 VSKYFVS 111 (357)
Q Consensus 105 ~~~~l~~ 111 (357)
.+...+.
T Consensus 81 ~G~~~l~ 87 (117)
T 4esf_A 81 AGRQELE 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8885553
|
| >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=89.22 E-value=0.38 Score=35.91 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=55.2
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhC------cCCCCCcchHHHHHHHHhcCcceeeeccC-C----Ccceecc
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVSS-G----ERLYGLT 103 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~----~~~y~~t 103 (357)
.+++.-.+++-|+..|.+ +|.+--+|++.+. + ++..+.+.|+-|+..|+|+..... + ...|++|
T Consensus 8 ~~l~~g~l~~~IL~lL~~-~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT 82 (117)
T 3elk_A 8 ERILHGLITLYILKELVK-RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHIT 82 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH-SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEEC
T ss_pred HHHHhhHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 445666677778888887 5999999999886 6 678999999999999999975321 1 2369999
Q ss_pred hhchhhhc
Q 018366 104 PVSKYFVS 111 (357)
Q Consensus 104 ~~~~~l~~ 111 (357)
+.+...+.
T Consensus 83 ~~G~~~l~ 90 (117)
T 3elk_A 83 DAGKKFLC 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99886554
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=88.96 E-value=1.8 Score=38.26 Aligned_cols=91 Identities=14% Similarity=0.156 Sum_probs=56.2
Q ss_pred CceEEEEcCCc--chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCCCEEEeccccccCChhHH
Q 018366 195 VERLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEGDAILMKWILHCWDDDHC 270 (357)
Q Consensus 195 ~~~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~D~i~~~~~lh~~~~~~~ 270 (357)
..+|.=||+|. +.++..+.+......++++|. ++.++.+.+..-+.-...|..+ .....|+|++.- +....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999884 345666666544337888997 5555554433222222233322 233349988753 44566
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 018366 271 LRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 271 ~~~L~~~~~~LkpgG~l~i~ 290 (357)
.++++++...++||..++-+
T Consensus 108 ~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHhhccCCCcEEEEC
Confidence 78899999999998765543
|
| >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 | Back alignment and structure |
|---|
Probab=88.33 E-value=0.25 Score=46.70 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=50.0
Q ss_pred HHHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.-+..|+..|.+. ++.|..+||+++++ ++..+.|+++-|+..|+|.+.....++ ...+|+.+..++
T Consensus 404 ~~q~~vl~~l~~~~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 404 YEEIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 3455688888876 68999999999999 999999999999999999986432222 244555554433
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.17 E-value=0.46 Score=40.89 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=37.3
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP 234 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 234 (357)
.++.++.... .+...|||..||+|..+.+..+. +-+++++|+ +..++.++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 4555666543 35679999999999999988876 457888888 66666554
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=88.17 E-value=1.2 Score=38.09 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=62.8
Q ss_pred CceEEEEcCCcchHHHHHHhh-------CCCCeEEEeec----hHH------------------------HH-------h
Q 018366 195 VERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL----PHV------------------------VQ-------D 232 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~-------~ 232 (357)
+..|+|+|+-.|..+..++.. .++-++.++|. |+. +. .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 459999999999887776542 45678888883 321 00 0
Q ss_pred CCC----CCCceEEEcCCCCCC-------CCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 233 APS----YAGVEHVGGNMFDSV-------PEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 233 a~~----~~~v~~~~~D~~~~~-------p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.+. .++|+++.|++.+.+ |.. |++++=.= .+ +.....+..+...|+|||.|++-+
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D--~Y--~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD--LY--EPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC--CH--HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc--cc--chHHHHHHHHHHHhCCCcEEEEcC
Confidence 011 157899999987622 332 77665431 12 455688999999999999999855
|
| >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=1.1 Score=33.27 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=54.1
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCcceeeeccC---C--Cccee
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSS---G--ERLYG 101 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~---~--~~~y~ 101 (357)
.+++.-.+++=|+..|.+ +|.+--+|.+.+ ++ ++..+.+.|+-|+..|+|+..... + ...|+
T Consensus 6 ~~~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~ 80 (116)
T 3f8b_A 6 KEMLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYR 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEE
T ss_pred HHHHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEE
Confidence 345556667777778887 599999999887 45 788999999999999999975321 1 23588
Q ss_pred cchhchhhhc
Q 018366 102 LTPVSKYFVS 111 (357)
Q Consensus 102 ~t~~~~~l~~ 111 (357)
+|+.+...+.
T Consensus 81 LT~~G~~~l~ 90 (116)
T 3f8b_A 81 LTEIGHENMR 90 (116)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9998875553
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=87.87 E-value=0.71 Score=35.81 Aligned_cols=59 Identities=10% Similarity=0.170 Sum_probs=44.8
Q ss_pred HHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcceeeeccCC-Ccceec
Q 018366 40 AAIQLGVFEIIAKA-GKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSSG-ERLYGL 102 (357)
Q Consensus 40 ~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~~y~~ 102 (357)
+..+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+....+ ...|..
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 86 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGDASSRFDF 86 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTTSCCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCCCceEEEC
Confidence 44556688888763 389999999999 55 7778999999999999999764322 234654
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=87.85 E-value=0.31 Score=35.26 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=38.6
Q ss_pred HHHHHHhChhH-HHHhCCCC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 38 TQAAIQLGVFE-IIAKAGKL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 38 l~~a~~lglfd-~L~~~g~~-t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+...++..|.+ .+..+... |..+||+.+++ .+.-+++-|+.|...|+|...
T Consensus 16 l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 16 VATHFRTLIKSGELAPGDTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 34444445555 33333255 99999999999 889999999999999999864
|
| >3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=87.50 E-value=0.52 Score=34.54 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=50.2
Q ss_pred HHHHHhChhHHHHhCCCCCHHHHHHHh----CcCCCCCcchHHHHHHHHhcCcceeeeccCCC----cceecchhchhhh
Q 018366 39 QAAIQLGVFEIIAKAGKLSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE----RLYGLTPVSKYFV 110 (357)
Q Consensus 39 ~~a~~lglfd~L~~~g~~t~~~la~~~----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~----~~y~~t~~~~~l~ 110 (357)
.--.++-|+..|.+ +|.+--+|++.+ ++ ++..+.+.|+-|+..|+|.......+ ..|++|+.+...+
T Consensus 7 ~g~l~~~IL~~L~~-~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 7 ALLIEYLILAIVSK-HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHHHH-SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 34456667777777 488888888775 67 88899999999999999997532112 2488998887555
Q ss_pred c
Q 018366 111 S 111 (357)
Q Consensus 111 ~ 111 (357)
.
T Consensus 82 ~ 82 (108)
T 3l7w_A 82 V 82 (108)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=86.73 E-value=0.38 Score=36.93 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=32.1
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..|.++||+++++ ++.-+.+.|+.|+..|++...
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999 999999999999999999974
|
| >1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* | Back alignment and structure |
|---|
Probab=86.64 E-value=0.83 Score=32.98 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=35.1
Q ss_pred HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhc
Q 018366 39 QAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVS 85 (357)
Q Consensus 39 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~ 85 (357)
..+.++||+..|.. |+.|-.|||+.+|+ ....+.|.=++|..
T Consensus 43 ~l~~R~~l~~~L~~-ge~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 43 ALGTRVRIIEELLR-GEMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHHH-CCSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 45667999999998 47999999999999 88888888776643
|
| >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.37 E-value=1.8 Score=27.29 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=36.9
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
++|+.|+|+.+++ +-+..+.-|+-|.+.|-+.+. ..+|++.|-
T Consensus 18 GMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR----sSRYrlkph 60 (68)
T 3i71_A 18 GMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR----SSRYRLKPH 60 (68)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----CCEEEECC-
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh----ccccccCcc
Confidence 7999999999999 888889999999999999963 578887553
|
| >3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=86.22 E-value=0.88 Score=35.03 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=45.9
Q ss_pred HHHHHhChhHHHHhC-CCCCHHHHHHHhCcC-CCCCcchHHHHHHHHhcCcceeeeccC-CCcceec
Q 018366 39 QAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECSVSS-GERLYGL 102 (357)
Q Consensus 39 ~~a~~lglfd~L~~~-g~~t~~~la~~~~~~-~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~y~~ 102 (357)
.+..+.-|++.|.+. ++.|++||.+.+.-. ...+..-+.|.|+.|+..|++.+.... +...|..
T Consensus 12 ~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~ 78 (139)
T 3mwm_A 12 ATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRR 78 (139)
T ss_dssp HHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEEC
T ss_pred cCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEE
Confidence 356677788888764 389999999998421 011677899999999999999976422 2335654
|
| >3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=86.21 E-value=1.1 Score=33.23 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=54.0
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHh------CcCCCCCcchHHHHHHHHhcCcceeeeccC-C----Ccceecc
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSS-G----ERLYGLT 103 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~----~~~y~~t 103 (357)
.+++.-.+++-|+..|.+ +|.+--+|++.+ ++ ++..+...|+-|+..|+|+..... + ...|++|
T Consensus 7 ~~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT 81 (116)
T 3hhh_A 7 TELLKGILEGLVLAIIQR-KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLT 81 (116)
T ss_dssp HHHHTTHHHHHHHHHHHH-SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEEC
T ss_pred HHHHhhhHHHHHHHHHhc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 345555566667777877 499999999998 46 788999999999999999975321 1 2359999
Q ss_pred hhchhhhc
Q 018366 104 PVSKYFVS 111 (357)
Q Consensus 104 ~~~~~l~~ 111 (357)
+.+...+.
T Consensus 82 ~~G~~~l~ 89 (116)
T 3hhh_A 82 SSGEAELA 89 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98875553
|
| >1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=85.37 E-value=0.63 Score=36.16 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=52.1
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCcceeeeccC---C--Ccceecc
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSS---G--ERLYGLT 103 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~---~--~~~y~~t 103 (357)
++..-.++-|+..|.+ +|.+..+|++.+ ++ .+..+.+.|+-|+..|+|...... + ...|++|
T Consensus 37 ~~~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT 111 (145)
T 1xma_A 37 VIRGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRIT 111 (145)
T ss_dssp SGGGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEEC
T ss_pred HhcCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEEC
Confidence 3444566677777876 589999998887 46 888999999999999999875321 1 2358999
Q ss_pred hhchhhhc
Q 018366 104 PVSKYFVS 111 (357)
Q Consensus 104 ~~~~~l~~ 111 (357)
+.+..++.
T Consensus 112 ~~G~~~l~ 119 (145)
T 1xma_A 112 PEGIKYYK 119 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88875543
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=84.95 E-value=1.4 Score=34.42 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=46.1
Q ss_pred HHHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcceeeeccCC-Ccceec
Q 018366 39 QAAIQLGVFEIIAKA-GKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSSG-ERLYGL 102 (357)
Q Consensus 39 ~~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~~y~~ 102 (357)
.+..+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+....+ ...|..
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 366677789999764 389999999998 55 7778999999999999999764322 234654
|
| >2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} | Back alignment and structure |
|---|
Probab=84.93 E-value=0.92 Score=34.89 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=43.2
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
-.|.+.|. .|+.|..+||+++|+ ......-.|..|+..|++.++....-..+++
T Consensus 14 ~~ILE~Lk-~G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L 67 (165)
T 2vxz_A 14 RDILALLA-DGCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRVAFGNVALVCL 67 (165)
T ss_dssp HHHHHHHT-TCCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEEEETTEEEEES
T ss_pred HHHHHHHH-hCCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEEEEccEEEEEe
Confidence 34677788 479999999999999 8889999999999999999875432333443
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=84.80 E-value=4.8 Score=34.76 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=52.7
Q ss_pred ceEEEEcCCc-c-hHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHH
Q 018366 196 ERLVDVGGGF-G-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLR 272 (357)
Q Consensus 196 ~~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~ 272 (357)
.+|.=||+|. | .++..+.+..++..++++|. ++..+.+.+.........|..+.....|+|++.- ++.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence 4788899885 3 45556666655667888887 4444433222111112233322222349988743 5556678
Q ss_pred HHHHHHHh-CCCCCEEEE
Q 018366 273 ILKNCYKA-IPDNGKVIV 289 (357)
Q Consensus 273 ~L~~~~~~-LkpgG~l~i 289 (357)
+++++... ++|+..++.
T Consensus 82 v~~~l~~~~l~~~~ivi~ 99 (290)
T 3b1f_A 82 FIKILADLDLKEDVIITD 99 (290)
T ss_dssp HHHHHHTSCCCTTCEEEC
T ss_pred HHHHHHhcCCCCCCEEEE
Confidence 88888888 888765553
|
| >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 | Back alignment and structure |
|---|
Probab=84.63 E-value=0.99 Score=34.54 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=44.5
Q ss_pred HHHHhChhHHHHhC--CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcceeeeccC-CCcceec
Q 018366 40 AAIQLGVFEIIAKA--GKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSS-GERLYGL 102 (357)
Q Consensus 40 ~a~~lglfd~L~~~--g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~y~~ 102 (357)
+..+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.... +...|..
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 34556688888753 489999999998 55 777899999999999999976322 2235754
|
| >1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=84.59 E-value=1.2 Score=35.94 Aligned_cols=64 Identities=11% Similarity=0.306 Sum_probs=48.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCcceeeeccC-----CCcceecchhchh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSS-----GERLYGLTPVSKY 108 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~~~~~ 108 (357)
+++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+-|+..|+|+..... ....|++|+.+..
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence 35557777877 599999999998 45 788999999999999999965321 1235999999874
Q ss_pred hh
Q 018366 109 FV 110 (357)
Q Consensus 109 l~ 110 (357)
.+
T Consensus 78 ~l 79 (179)
T 1yg2_A 78 AL 79 (179)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=84.33 E-value=2.3 Score=38.73 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhC-------CCCeEEEeech
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKY-------PQIKAVNFDLP 227 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~~ 227 (357)
+.+..|+|+|+|+|.++..+++.. ..+++..++..
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~S 120 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEIN 120 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCC
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecC
Confidence 345689999999999998887642 34578888873
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=84.23 E-value=4.5 Score=35.08 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=48.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC----CeEEEeechHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDH 269 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~ 269 (357)
++..|+=+|||.|.....+.+.+|+ ++.+.+|...-....+..+ ++.+....+ ++.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~----------------NV~li~~fv----de~ 119 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLR----------------DVTLVTRFV----DEE 119 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCT----------------TEEEEECCC----CHH
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCC----------------cEEEEeccC----CHH
Confidence 3569999999999999999988775 5788888311000111111 344433322 232
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
-+++.++.++...+|+|.|.-..
T Consensus 120 ---dl~~l~~~~~~~~iLLISDIRS~ 142 (307)
T 3mag_A 120 ---YLRSIKKQLHPSKIILISDVRSK 142 (307)
T ss_dssp ---HHHHHHHHHTTSCEEEEECCCC-
T ss_pred ---HHHHHHHhccCCCEEEEEEecCC
Confidence 25666666777789999887554
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=84.07 E-value=0.82 Score=28.83 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=38.9
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 43 QLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 43 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
|-.|++.+..+| -..++.+|+++|+ .++-+-..|+.|...|++..
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 445677777765 6899999999999 89999999999999999975
|
| >3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A | Back alignment and structure |
|---|
Probab=84.03 E-value=0.84 Score=30.03 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=39.1
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcch-HHHHHHHHhcCcceeee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECS 92 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~ 92 (357)
+-.|++.|...||.++=.||+++|+ .... +.+.|..|...|+|..+
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGl----ktAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGM----RTAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTC----CSGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCc----chhhhcCHHHHHHHHccCcCCC
Confidence 4457888888889999999999999 4444 89999999999999764
|
| >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* | Back alignment and structure |
|---|
Probab=83.90 E-value=0.95 Score=40.28 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=44.7
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
+..|++.|.++++.|.++||+.+++ .+..++|-++.|...|++.... .+..|++.+
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~--~g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV--PGKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE--TTTEEECSS
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe--cCCCcEEee
Confidence 3456777876568999999999999 9999999999999999987542 234677654
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=83.81 E-value=1.4 Score=35.66 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=45.6
Q ss_pred HHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcc-eeeeccCCCcceecch
Q 018366 39 QAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSSGERLYGLTP 104 (357)
Q Consensus 39 ~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~y~~t~ 104 (357)
..-....|++.|.+. ++.|..+||+.+++ .++-+.|-++.|...|+ +... .+.|.+.+
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~----~~Gy~l~~ 78 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT----PRGYVLAG 78 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE----TTEEECCT
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----CCEEEECC
Confidence 345566788888853 37999999999999 89999999999999999 7642 34566554
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=83.39 E-value=0.95 Score=38.71 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=49.1
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
-+..++..|.+. ++.|..+||+.+++ ++..+.++++-|+..|+|.+.....+. ...+|+.+..+.
T Consensus 35 ~q~~vL~~L~~~~~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 35 KEFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 345577777653 37899999999999 899999999999999999986433222 355777766544
|
| >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
|---|
Probab=83.29 E-value=0.82 Score=38.49 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=40.0
Q ss_pred CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 57 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 57 t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
+..+||+.+++ ++..+.+.++.|+..|++.+. ....+.+|+.+..+..
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA---GDRHLELTEKGRALAI 73 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe---CCccEEECHHHHHHHH
Confidence 44999999999 899999999999999999974 2357888888775543
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=83.02 E-value=0.69 Score=33.53 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=35.4
Q ss_pred ChhHHHHhCCCC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIAKAGKL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~~~g~~-t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.|+..|..++.. |..+||+.+|+ .+.-+++-|+.|+..|+|...
T Consensus 32 ~I~~~l~~g~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 32 HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp HHTTSSBTTEEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhhcCCCcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 334444443345 99999999999 899999999999999999974
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=82.77 E-value=3.8 Score=36.73 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=70.4
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCC-CCCceEEEcCCCCC----CC--CCCEEEeccccccC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPS-YAGVEHVGGNMFDS----VP--EGDAILMKWILHCW 265 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~----~p--~~D~i~~~~~lh~~ 265 (357)
..+|+|+-||.|.+...+....-+. .+..+|. +..++..+. .+...++.+|+.+- ++ ..|+++..--...+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 3589999999999999999875322 3566676 555554443 24556788888762 22 23999887665554
Q ss_pred Chh-------H-HHHHHHH---HHHhCC--CCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 266 DDD-------H-CLRILKN---CYKAIP--DNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 266 ~~~-------~-~~~~L~~---~~~~Lk--pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
+.. + .-.++.+ +.+.++ | ++++.|.+..- . .+ .+.+.+.+.
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P--~~~~~ENV~~l-------------~---------~~--~~~~~i~~~ 135 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGF-------------E---------VS--STRDLLIQT 135 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCC--SEEEEEEETTG-------------G---------GS--HHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCC--CEEEEeCCccc-------------c---------CH--HHHHHHHHH
Confidence 321 1 1123333 334445 5 35566765421 0 01 135677888
Q ss_pred HHHcCCceeE
Q 018366 333 AIAAGFKHIN 342 (357)
Q Consensus 333 l~~aGf~~~~ 342 (357)
|++.||.+..
T Consensus 136 l~~~GY~v~~ 145 (343)
T 1g55_A 136 IENCGFQYQE 145 (343)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCeeEE
Confidence 8999988654
|
| >2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C* | Back alignment and structure |
|---|
Probab=82.52 E-value=1.8 Score=27.84 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=28.2
Q ss_pred hHHHHhCCCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcce
Q 018366 47 FEIIAKAGKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVL 89 (357)
Q Consensus 47 fd~L~~~g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l 89 (357)
...+...++.|++||++.+ ++ ...-+.|.|+ .+|++
T Consensus 11 ~~ll~~~~~~t~~el~~~l~~~~~~v----s~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 11 REIITSNEIETQDELVDMLKQDGYKV----TQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHTTCCC----CHHHHHHHHH---HHTCE
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCCc----CHHHHHHHHH---HcCCE
Confidence 3445555689999999999 88 7888888888 56777
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=82.17 E-value=4.6 Score=35.93 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=69.3
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCe-EEEeec-hHHHHhCCCC-CCceEEEcCCCCC----CCCCCEEEeccccccCC-
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-AGVEHVGGNMFDS----VPEGDAILMKWILHCWD- 266 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~----~p~~D~i~~~~~lh~~~- 266 (357)
..+++|+-||.|.+...+.... .+ +..+|+ +..++..+.. +... .+|+.+- ++..|+++..--...++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 3689999999999999998864 44 455666 5544433321 2221 5676651 33348888765444443
Q ss_pred --------hhH--HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 267 --------DDH--CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 267 --------~~~--~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
|+. ...-+-++.+.++| +++++|.+..- .. ...-.+.+.+.+.|++.
T Consensus 87 ag~~~g~~d~r~~L~~~~~r~i~~~~P--~~~~~ENV~gl-------------~~--------~~~~~~~~~i~~~l~~~ 143 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIARIVREKKP--KVVFMENVKNF-------------AS--------HDNGNTLEVVKNTMNEL 143 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCC--SEEEEEEEGGG-------------GT--------GGGGHHHHHHHHHHHHT
T ss_pred hcccCCCcchhhHHHHHHHHHHHhccC--cEEEEeCcHHH-------------Hh--------ccccHHHHHHHHHHHhC
Confidence 111 11122233444577 47777776421 00 00112457788888999
Q ss_pred CCceeEE
Q 018366 337 GFKHINF 343 (357)
Q Consensus 337 Gf~~~~~ 343 (357)
||.+...
T Consensus 144 GY~v~~~ 150 (327)
T 2c7p_A 144 DYSFHAK 150 (327)
T ss_dssp TBCCEEE
T ss_pred CCEEEEE
Confidence 9886543
|
| >3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B | Back alignment and structure |
|---|
Probab=81.97 E-value=1.8 Score=36.04 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 53 AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 53 ~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
.|++|+.+||+.+|+ ........|+.++..|++..+.
T Consensus 166 ~g~vt~~~la~~l~w----s~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 166 KGSLTSEEFAKLVGM----SVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCEEEEC
Confidence 358999999999999 8889999999999999999763
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=81.83 E-value=3 Score=41.14 Aligned_cols=96 Identities=13% Similarity=0.205 Sum_probs=53.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhC-------CC-----CeEEEeec----hHHHHhCCC---------------C------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKY-------PQ-----IKAVNFDL----PHVVQDAPS---------------Y------ 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~~~~a~~---------------~------ 236 (357)
+.-+|+|+|-|+|.......+.+ |+ ++++.++. ++.+..+-. .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34699999999998766655542 22 45677764 233321100 0
Q ss_pred --------CC--ceEEEcCCCC---CCC----CC-CEEEeccccccCC-hhHHHHHHHHHHHhCCCCCEEEE
Q 018366 237 --------AG--VEHVGGNMFD---SVP----EG-DAILMKWILHCWD-DDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 237 --------~~--v~~~~~D~~~---~~p----~~-D~i~~~~~lh~~~-~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
++ +++..+|+.+ .++ .. |++++-..-..-. +-...++++.+++.++|||.+..
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 11 3455577655 121 12 8887633211111 11135789999999999987764
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=81.07 E-value=5.8 Score=36.03 Aligned_cols=94 Identities=10% Similarity=0.101 Sum_probs=60.2
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCe-EEEeec-hHHHHhCCC-CCCceEEEcCCCCC----C------CCC-CEEEeccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPS-YAGVEHVGGNMFDS----V------PEG-DAILMKWI 261 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~----~------p~~-D~i~~~~~ 261 (357)
.+++|+-||.|.++..+.+.. .. +..+|+ +..++..+. .+...++.+|+.+- + +.. |+|+..--
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 589999999999999998875 44 346676 555544433 35678888888762 1 123 99987766
Q ss_pred cccCC--------hhHHHHHHH---HHHHhCCCCCEEEEEeecc
Q 018366 262 LHCWD--------DDHCLRILK---NCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 262 lh~~~--------~~~~~~~L~---~~~~~LkpgG~l~i~e~~~ 294 (357)
...|+ |+. -.++. ++.+.++| +++++|.+.
T Consensus 81 CQ~fS~ag~~~~~d~r-~~L~~~~~~~v~~~~P--~~~v~ENV~ 121 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSR-NQLYMHFYRLVSELQP--LFFLAENVP 121 (376)
T ss_dssp CCTTC-------CHHH-HHHHHHHHHHHHHHCC--SEEEEEECT
T ss_pred CCCcccccCCCCCCch-HHHHHHHHHHHHHhCC--CEEEEecch
Confidence 55554 222 12333 34445577 677778764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=81.01 E-value=2.3 Score=39.14 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=32.5
Q ss_pred CCCceEEEEcCCcchHHHHHH-hhCCC-CeEEEeec-hHHHHhC
Q 018366 193 QNVERLVDVGGGFGVTLSMIT-SKYPQ-IKAVNFDL-PHVVQDA 233 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a 233 (357)
++...|+|||++.|.++..++ +..++ .+++.++. |...+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L 268 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL 268 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 567899999999999999988 56665 68999987 6555443
|
| >2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.82 E-value=0.95 Score=32.29 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=39.4
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
-|.-|+..+...| +++..+|..++++ +...+.+.|+.|+..+++..+
T Consensus 38 ~E~lVy~~I~~aGn~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence 3445666666644 7999999999999 899999999999999999975
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=80.54 E-value=4.4 Score=31.62 Aligned_cols=107 Identities=15% Similarity=0.232 Sum_probs=61.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHH--HHhCCCCCCceEEEcCCCCCCCC-----C-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV--VQDAPSYAGVEHVGGNMFDSVPE-----G-D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~--~~~a~~~~~v~~~~~D~~~~~p~-----~-D 254 (357)
...+....+. ..-|+|+|=|+|..=.++.+.+|+-.+.++|..-. -.... +.=.++.||+.+-.|. + .
T Consensus 31 ~~a~~~v~~~--~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P--~~e~~ilGdi~~tL~~~~~r~g~~ 106 (174)
T 3iht_A 31 EHAIAQTAGL--SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTP--PEAQLILGDIRETLPATLERFGAT 106 (174)
T ss_dssp HHHHHHTTTC--CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCC--CGGGEEESCHHHHHHHHHHHHCSC
T ss_pred HHHHHHhcCC--CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCC--chHheecccHHHHHHHHHHhcCCc
Confidence 3445555533 34799999999999999999999999999995110 00000 2235777887663222 2 3
Q ss_pred EEEeccccccCChhHHHHHH----HHHHHhCCCCCEEEEEeec
Q 018366 255 AILMKWILHCWDDDHCLRIL----KNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L----~~~~~~LkpgG~l~i~e~~ 293 (357)
+.+...=+-.-..+.-.... .-+..+|.|||.++.-.+.
T Consensus 107 a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 107 ASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp EEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred eEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 33332222111212222222 2344678899988876654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 357 | ||||
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 1e-78 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 7e-74 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 5e-70 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 1e-37 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 1e-35 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 5e-35 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 3e-33 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 2e-21 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 2e-15 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 4e-13 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 4e-06 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 0.002 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 239 bits (610), Expect = 1e-78
Identities = 99/243 (40%), Positives = 150/243 (61%), Gaps = 3/243 (1%)
Query: 117 SLGHFMALPLDKVFMESWLGLRDAVMEGGI-PFNRVHGMHIFEYASGNPGFNETYHKAMF 175
L F ++ W+ ++AV++ I F VHG+ +E+ + N+ ++K+M
Sbjct: 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62
Query: 176 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS 235
+ M+R+LE Y GF+ + LVDVGGG G L +I SKYP IK +NFDLP V+++AP
Sbjct: 63 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122
Query: 236 YAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295
+G+EHVGG+MF SVP+GDA+++K + H W D+ C+ L NC+KA+ NGKVI++ I+P
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182
Query: 296 EIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLY-IME 354
E P S ++ S LD L+ GGRERT+K++ +L+ +GF A N +ME
Sbjct: 183 EEPNTSEESKLVSTLDNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 241
Query: 355 FFK 357
F+K
Sbjct: 242 FYK 244
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 227 bits (578), Expect = 7e-74
Identities = 131/242 (54%), Positives = 174/242 (71%)
Query: 114 DGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKA 173
DGVS+ + DKV MESW L+DAV++GGIPFN+ +GM FEY +P FN+ ++K
Sbjct: 1 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 60
Query: 174 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 233
M +HSTI M++ILE Y GF+ ++ LVDVGGG G ++ I SKYP IK +NFDLPHV++DA
Sbjct: 61 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120
Query: 234 PSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293
PSY GVEHVGG+MF S+P+ DA+ MKWI H W D+HCL+ LKNCY+A+PDNGKVIV I
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180
Query: 294 VPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIM 353
+P P+ S + + +DV+++ + GG+ERT+KEF +LA AGF+ N YIM
Sbjct: 181 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 240
Query: 354 EF 355
EF
Sbjct: 241 EF 242
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 217 bits (553), Expect = 5e-70
Identities = 74/245 (30%), Positives = 132/245 (53%), Gaps = 6/245 (2%)
Query: 116 VSLGHFMALPLDKVFMESWLGLRDAVMEGGI-PFNRVHGMHIFEYASGNPGFNETYHKAM 174
+ L + LD S+ L+ + E + F G +++ NP +N +++ AM
Sbjct: 1 LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAM 60
Query: 175 FNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAP 234
+ S + + + F +E +VDVGGG G T +I +P++K + FD P VV++
Sbjct: 61 ASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS 120
Query: 235 SYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDN---GKVIVMN 291
+ +VGG+MF S+P DA+L+K+ILH W D CLRILK C +A+ ++ GKV +++
Sbjct: 121 GSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID 180
Query: 292 SIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLY 351
++ + + + + L+DV + G+ER ++E+ +L I AGF+H + L
Sbjct: 181 MVIDKKKDENQVTQIKLLMDVNMAC--LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLS 238
Query: 352 IMEFF 356
++E +
Sbjct: 239 LIEIY 243
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 133 bits (335), Expect = 1e-37
Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 17/239 (7%)
Query: 130 FMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHY 189
++ GL D V G + +G +E S + +++ M +A E + Y
Sbjct: 18 ADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAY 77
Query: 190 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN---- 245
+ + V ++DVGGG G L+ I + P ++ +L + A +
Sbjct: 78 D-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVA 136
Query: 246 ----MFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVS 301
D +L+ ++L W D+ L IL+ C +A+ G+++V++ E
Sbjct: 137 EGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDG-- 194
Query: 302 SSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC-----VCNLYIMEF 355
+ ++LLD+ ++T GGR RT+ E +LA +AG + + + I+EF
Sbjct: 195 ADRFFSTLLDLRMLTF-MGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEF 252
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 123 bits (311), Expect = 1e-35
Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 8/105 (7%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK---LSAPEIAAQLQAQNVKAP 73
+EE+ AMQLA VLPM ++A++L + EIIAKAG +S EIA+QL N AP
Sbjct: 3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAP 62
Query: 74 MMLDRMLRLLVSHRVLECSVSS-----GERLYGLTPVSKYFVSNK 113
+MLDRMLRLL + +L CSV + +RLYGL V+KY V N+
Sbjct: 63 VMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 122 bits (307), Expect = 5e-35
Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK----LSAPEIAAQLQA--QNV 70
E+ + AM L +V P AAI L +FEIIAKA +S EIA++L A Q+
Sbjct: 2 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHS 61
Query: 71 KAPMMLDRMLRLLVSHRVLECSVSSG-----ERLYGLTPVSKYFVSNKD 114
P LDRMLRLL S+ VL + + ER+YGL+ V KY V ++
Sbjct: 62 DLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 122 bits (305), Expect = 3e-33
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 13/217 (5%)
Query: 133 SWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGF 192
S+ L DA+ G + ++G +E +G P ++ + +A + Y+ +
Sbjct: 20 SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-W 78
Query: 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF----- 247
NV ++DVGGG G + I + P + A ++ V A SY E + +
Sbjct: 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 138
Query: 248 ---DSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSA 304
+ DAI++ ++L W D +RIL C +A+ G++++ +
Sbjct: 139 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQF 198
Query: 305 RETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHI 341
E LD+ ++ GG RT++++ LA +AG
Sbjct: 199 TE---LDLRMLVF-LGGALRTREKWDGLAASAGLVVE 231
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 85.3 bits (211), Expect = 2e-21
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 24 HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGK-LSAPEIAAQLQAQNVKAPMMLDRMLRL 82
+ + M+ + A+++ + II GK +S + + LQ + K + R++R
Sbjct: 12 LLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV-RRLMRY 70
Query: 83 LVSHRVLECSVSSGERLYGLTPVSKYFVSNKD 114
L + E E Y LT S+ V D
Sbjct: 71 LAHNGFFEIITKE-EESYALTVASELLVRGSD 101
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 69.1 bits (169), Expect = 2e-15
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 24 HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLL 83
+ + PM + A L + + I G + +AA+ + P L R++R L
Sbjct: 4 RTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDTR----PEALLRLIRHL 58
Query: 84 VSHRVLECSVSSGERLYGLTPVSKYFVSN 112
V+ +LE + T V + +
Sbjct: 59 VAIGLLEE---DAPGEFVPTEVGELLADD 84
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 62.1 bits (151), Expect = 4e-13
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 26 MQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVS 85
++ +V PMA + A L + + + AG + +A + P L R++R L
Sbjct: 12 LKNLGNLVTPMALRVAATLRLVDHLL-AGADTLAGLADRTDTH----PQALSRLVRHLTV 66
Query: 86 HRVLECSVSSGERLYGLTPVSKYFV 110
VLE R T +
Sbjct: 67 VGVLEGG-EKQGRPLRPTRLGMLLA 90
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 45.3 bits (106), Expect = 4e-06
Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSV----- 250
R++D+G G G T + + V+ V +
Sbjct: 18 HRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77
Query: 251 ---PEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARET 307
D I ++ H + D + ++ + + +G+ ++++ PE P +
Sbjct: 78 FPDDSFDIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDPVLD------ 129
Query: 308 SLLDVLLMTRDGG-GRERTKKEFTELAIAAGFKHI 341
++ L RD RE + E+ + A +
Sbjct: 130 EFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ 164
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 43.1 bits (100), Expect = 2e-05
Identities = 19/168 (11%), Positives = 48/168 (28%), Gaps = 12/168 (7%)
Query: 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEH 241
+ ++++ + E ++DV G G + ++ A + + G H
Sbjct: 4 LAKLMQIA-ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH 62
Query: 242 VGGNMFDSVPEGDAILMKWILHCWDDDHCL------RILKNCYKAIPDNGKVIVMNSIVP 295
E + + Y+ + G+++++++ P
Sbjct: 63 QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 122
Query: 296 EIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINF 343
E V R K ++ ++ AGF+
Sbjct: 123 ENDAFDVFYNY-----VEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 165
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 36.8 bits (84), Expect = 0.002
Identities = 19/169 (11%), Positives = 46/169 (27%), Gaps = 15/169 (8%)
Query: 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAV----NFDLPHVVQDAPSYAGVE 240
++ + F L+++G G S + + I V + +
Sbjct: 11 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIH 70
Query: 241 HVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEV 300
+ + +L + H D L+ + + + G++ ++ P V
Sbjct: 71 SRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRI--NDDWLAEGGRLFLV---CPNANAV 125
Query: 301 SS-SARETSLLDVLLMTRDGGG-----RERTKKEFTELAIAAGFKHINF 343
S A + ++ + A AG +
Sbjct: 126 SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 174
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.85 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.83 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.81 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.8 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.79 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.79 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.77 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.76 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.75 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.73 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.71 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.7 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.68 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.67 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.67 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.64 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.63 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.62 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.59 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.58 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.57 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.56 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.54 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.53 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.5 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.49 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.48 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.47 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.47 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.45 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.45 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.45 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.41 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.4 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.39 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.38 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.34 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.34 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.32 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.3 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.3 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.3 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.3 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.29 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.27 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.25 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.24 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.14 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.1 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.04 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.02 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.99 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.98 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.97 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.89 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.86 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.84 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.73 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.56 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.55 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.41 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.37 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.32 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.31 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.27 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.22 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.22 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.21 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.2 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.18 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.17 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.15 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.12 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.11 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.1 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.05 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.01 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.99 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.98 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.91 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.9 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.88 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.87 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.84 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.83 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.81 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.8 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.8 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.67 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.66 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 97.61 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.57 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.41 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.28 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 97.11 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 97.05 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 97.0 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 96.92 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.88 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.69 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.68 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.46 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 96.38 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.36 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 96.29 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 96.19 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 96.19 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 96.1 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 95.99 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 95.88 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 95.69 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 95.58 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 95.58 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 95.48 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 95.42 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.42 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 95.31 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 95.29 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.17 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 95.13 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 94.96 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 94.83 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 94.79 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 94.68 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 94.62 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 94.57 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 94.53 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.49 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 94.42 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 94.4 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 94.36 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.3 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 94.23 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.21 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 94.2 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 94.19 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 94.16 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 94.06 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.05 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 94.01 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 93.6 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 93.56 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 93.43 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 93.09 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 92.88 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 92.74 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 92.67 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.59 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.56 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 92.55 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.35 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 92.32 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 92.24 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 91.93 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 91.56 | |
| d1xmka1 | 73 | Z-alpha domain of dsRNA-specific adenosine deamina | 91.32 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.3 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 91.18 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.07 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 90.84 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 90.67 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 90.38 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 89.58 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.37 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 89.25 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 89.1 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 89.07 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.47 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 87.56 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.46 | |
| d1j75a_ | 57 | Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | 87.03 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 86.9 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 86.79 | |
| d1xn7a_ | 78 | Hypothetical protein YhgG {Escherichia coli [TaxId | 86.25 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 86.2 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 85.89 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 85.44 | |
| d1sfua_ | 70 | 34L {Yaba-like disease virus, YLDV [TaxId: 132475] | 85.3 | |
| d1s6la1 | 60 | Alkylmercury lyase MerB {Escherichia coli [TaxId: | 85.17 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 84.44 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 84.4 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 84.12 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 83.64 | |
| d1okra_ | 120 | Methicillin resistance regulatory protein MecI {St | 83.05 | |
| d1stza1 | 87 | Heat-inducible transcription repressor HrcA, N-ter | 82.9 | |
| d2obpa1 | 81 | Putative DNA-binding protein ReutB4095 {Ralstonia | 82.75 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 82.49 | |
| d2p8ta1 | 69 | Hypothetical protein PH0730 {Pyrococcus horikoshii | 80.87 | |
| d3bwga1 | 78 | Transcriptional regulator YydK {Bacillus subtilis | 80.83 | |
| d1dpua_ | 69 | C-terminal domain of RPA32 {Human (Homo sapiens) [ | 80.64 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 80.43 | |
| d1hw1a1 | 74 | Fatty acid responsive transcription factor FadR, N | 80.41 | |
| d1y0ua_ | 89 | Putative arsenical resistance operon repressor AF0 | 80.28 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=7.9e-45 Score=315.32 Aligned_cols=240 Identities=41% Similarity=0.794 Sum_probs=208.4
Q ss_pred chhhhhhccCChhhHHHhhhhHHHHhcCC-CccccccCCChhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCCC
Q 018366 117 SLGHFMALPLDKVFMESWLGLRDAVMEGG-IPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNV 195 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 195 (357)
|+++++.+.++|.+++.|.+|.+++++|. ++|+..+|.++|+|+.++|+..+.|+++|.+.+....+.+++.++.+++.
T Consensus 3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~ 82 (244)
T d1fp1d2 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGI 82 (244)
T ss_dssp CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTC
T ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 68888888888999999999999999876 56999999999999999999999999999999988888999988867888
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHHHHH
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILK 275 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~ 275 (357)
.+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|.+|+|+++++||+|+|+++.++|+
T Consensus 83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~ 162 (244)
T d1fp1d2 83 STLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLS 162 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999998888999999999999999889999999999999999999999
Q ss_pred HHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec-CCceeEEE
Q 018366 276 NCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC-VCNLYIME 354 (357)
Q Consensus 276 ~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie 354 (357)
+++++|+|||+|+|+|.+.++.+...........+|+.|+..+ +|++||.+||+++|++|||+.+++++. .+..+|||
T Consensus 163 ~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE 241 (244)
T d1fp1d2 163 NCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 241 (244)
T ss_dssp HHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEE
T ss_pred HHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEEE
Confidence 9999999999999999999876655554555667888888766 899999999999999999999999765 47788999
Q ss_pred EeC
Q 018366 355 FFK 357 (357)
Q Consensus 355 ~~~ 357 (357)
++|
T Consensus 242 ~~K 244 (244)
T d1fp1d2 242 FYK 244 (244)
T ss_dssp EEC
T ss_pred EeC
Confidence 998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.5e-43 Score=308.38 Aligned_cols=241 Identities=54% Similarity=1.006 Sum_probs=219.9
Q ss_pred CchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCCC
Q 018366 116 VSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNV 195 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 195 (357)
.++++++.+.+++.+++.|.+|.+++|+|+++|+..+|.++|+|+.++|+..+.|.++|...+......++..++.+++.
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~ 82 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL 82 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSC
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCC
Confidence 46888888877888999999999999999999999999999999999999999999999998888888898888744667
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHHHHH
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILK 275 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~ 275 (357)
.+|||||||+|.++..+++++|+++++++|+|++++.++..+|++++.+|+++++|.+|++++.+++|+|+++++..+|+
T Consensus 83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~ 162 (243)
T d1kyza2 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 162 (243)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999888999999999999999889999999999999999999999
Q ss_pred HHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecCCceeEEEE
Q 018366 276 NCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEF 355 (357)
Q Consensus 276 ~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~ 355 (357)
+++++|+|||+++|+|.+.++.............+|+.|+.++.+|++||.+||+++|++|||+.+++++.....+|||+
T Consensus 163 ~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~ 242 (243)
T d1kyza2 163 NCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF 242 (243)
T ss_dssp HHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEE
T ss_pred HHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEe
Confidence 99999999999999999987765544444445678888887666899999999999999999999999999999999998
Q ss_pred e
Q 018366 356 F 356 (357)
Q Consensus 356 ~ 356 (357)
+
T Consensus 243 ~ 243 (243)
T d1kyza2 243 L 243 (243)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=6.3e-42 Score=297.18 Aligned_cols=239 Identities=31% Similarity=0.595 Sum_probs=210.8
Q ss_pred chhhhhhccCChhhHHHhhhhHHHHhcCC-CccccccCCChhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCCC
Q 018366 117 SLGHFMALPLDKVFMESWLGLRDAVMEGG-IPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNV 195 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 195 (357)
++.+++.+..+|.++..|..|.+.++++. ++|+..+|.++|+|+.++|+..+.|+++|...+......+.+....+++.
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~ 81 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGL 81 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTC
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCc
Confidence 35566666677889999999999999985 57998999999999999999999999999988877666665543236778
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHHHHH
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILK 275 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~ 275 (357)
.+|||||||+|.++..+++++|+++++++|+|++++.+...+||+++.+|+++++|.+|+|+++++||+|+|+++.++|+
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~ 161 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILK 161 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHH
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHH
Confidence 89999999999999999999999999999999999999888999999999999888779999999999999999999999
Q ss_pred HHHHhCCCC---CEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecCCceeE
Q 018366 276 NCYKAIPDN---GKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYI 352 (357)
Q Consensus 276 ~~~~~Lkpg---G~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 352 (357)
+++++|+|| |+++|+|.+.++.+...........+++.|+. . +|++||.+||+++|++|||+.+++++.++..++
T Consensus 162 ~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~-~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~sv 239 (244)
T d1fp2a2 162 KCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 239 (244)
T ss_dssp HHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEE
T ss_pred HHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-C-CCcCCCHHHHHHHHHHcCCceEEEEECCCCeEE
Confidence 999999998 89999999998765444333444567777765 4 899999999999999999999999999999999
Q ss_pred EEEeC
Q 018366 353 MEFFK 357 (357)
Q Consensus 353 ie~~~ 357 (357)
||++|
T Consensus 240 IE~~p 244 (244)
T d1fp2a2 240 IEIYP 244 (244)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=2.5e-39 Score=284.05 Aligned_cols=238 Identities=25% Similarity=0.414 Sum_probs=204.2
Q ss_pred CchhhhhhccCChhh-HHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCC
Q 018366 116 VSLGHFMALPLDKVF-MESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQN 194 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 194 (357)
.++++|+.+...... ..+|.+|.+++|+|.++|...+|.++|+|+.++++..+.|+++|...+......+++.++ +++
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~ 81 (256)
T d1qzza2 3 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSA 81 (256)
T ss_dssp TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTT
T ss_pred HHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Ccc
Confidence 467888876533333 347999999999999999999999999999999999999999999988888889999998 999
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCCCCCCC-CEEEeccccccCC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFDSVPEG-DAILMKWILHCWD 266 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~~ 266 (357)
..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+++.++.+|+++++|.+ |+|++.++||+|+
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~ 161 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWS 161 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSC
T ss_pred CCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccC
Confidence 99999999999999999999999999999999888877654 368999999999988876 9999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
++++.++|++++++|||||+|+|+|...++.... .......+++.|+... +|+.||.++|+++|++|||+++++.+.
T Consensus 162 d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~--~~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~~AGf~~~~~~~~ 238 (256)
T d1qzza2 162 DEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--DRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTS 238 (256)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEE
T ss_pred cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcc--cHHHHHHHHHHHHhhC-CCccCCHHHHHHHHHHCCCceeEEEEe
Confidence 9999999999999999999999999876543222 2234566788888876 899999999999999999999999876
Q ss_pred C-----CceeEEEEeC
Q 018366 347 V-----CNLYIMEFFK 357 (357)
Q Consensus 347 ~-----~~~~vie~~~ 357 (357)
+ ...+|+|+.+
T Consensus 239 ~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 239 GSTTLPFDFSILEFTA 254 (256)
T ss_dssp CCSSCSSCEEEEEEEE
T ss_pred CCcCccCceEEEEEEe
Confidence 5 2568999874
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=3.1e-37 Score=270.67 Aligned_cols=236 Identities=23% Similarity=0.416 Sum_probs=198.0
Q ss_pred chhhhhhccCC-hhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCCC
Q 018366 117 SLGHFMALPLD-KVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNV 195 (357)
Q Consensus 117 ~~~~~~~~~~~-~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 195 (357)
.++.|..+... ......|.+|.+++|+|+++|...+|.++|+|+.++++..+.|..+|...+....+.+++.++ +++.
T Consensus 3 ~~r~~~~~~~~~~~~~~~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~ 81 (253)
T d1tw3a2 3 AQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNV 81 (253)
T ss_dssp CHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTC
T ss_pred chhhhhCHHHHHhhccccHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccC
Confidence 34555554311 123447999999999999999999999999999999999999999999998888889999998 9999
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCCCCCCC-CEEEeccccccCCh
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFDSVPEG-DAILMKWILHCWDD 267 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~~~ 267 (357)
.+|||||||+|.++..+++++|+++++++|+|++++.+++ .++|+++.+|++++.|.. |+|+++++||||++
T Consensus 82 ~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d 161 (253)
T d1tw3a2 82 RHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPD 161 (253)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCH
T ss_pred CEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCc
Confidence 9999999999999999999999999999999888877654 268999999999877765 99999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
+++.++|++++++|||||+|+|.|......... ......+|+.|+..+ +++.||.++|+++|++|||+++++...+
T Consensus 162 ~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~---~~~~~~~dl~~~~~~-~g~~rt~~e~~~ll~~AGf~~~~v~~~~ 237 (253)
T d1tw3a2 162 HDAVRILTRCAEALEPGGRILIHERDDLHENSF---NEQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLP 237 (253)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC---SHHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcc---hhHHHHhhHHHHhhC-CCcCCCHHHHHHHHHHCCCeEEEEEECC
Confidence 999999999999999999999999866543222 223456677777765 8999999999999999999998887653
Q ss_pred C-----ceeEEEEeC
Q 018366 348 C-----NLYIMEFFK 357 (357)
Q Consensus 348 ~-----~~~vie~~~ 357 (357)
. ...++++.|
T Consensus 238 ~p~~~~~~~li~~~P 252 (253)
T d1tw3a2 238 SPTIPYDLSLLVLAP 252 (253)
T ss_dssp CSSSSCEEEEEEEEE
T ss_pred CCCCCccEEEEEEec
Confidence 2 345666654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=1.5e-20 Score=160.87 Aligned_cols=162 Identities=14% Similarity=0.180 Sum_probs=119.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhh--CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCCCEEEeccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEGDAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~D~i~~~~~ 261 (357)
++..+|||||||+|..+..+++. .|+.+++++|+ ++|++.|++. .++.+..+|+.+ +.+..|+|++..+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 46679999999999999999986 48899999999 8999988752 457788888876 4444599999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhc---------------CCCccCCH
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD---------------GGGRERTK 326 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~t~ 326 (357)
+|+++.++..++|++++++|||||.+++.|...+..+... .........+.... ......|.
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 194 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN---HLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSI 194 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHH---HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCH
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeecccccccccchhh---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCH
Confidence 9999989999999999999999999999998776542111 00000000010000 00133689
Q ss_pred HHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 327 KEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+++.++|+++||+.++++...-.+..+.++|
T Consensus 195 ~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 195 ETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 9999999999999999876555555555544
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.83 E-value=1.5e-20 Score=161.32 Aligned_cols=152 Identities=16% Similarity=0.282 Sum_probs=116.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-CCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p~~- 253 (357)
..+++..+ +++..+|||||||+|.++..+++..+ +++++|+ +++++.|++ .++++++.+|+.+ +++.+
T Consensus 5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 45666666 78889999999999999999998864 6888898 888887754 3689999999988 77665
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh-hcCCCccCCHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT-RDGGGRERTKKEFTE 331 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~e~~~ 331 (357)
|+|++.+++||+++ ..++|++++++|||||++++.+...+... .+....+..... ...+...++.++|.+
T Consensus 82 fD~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPEND------AFDVFYNYVEKERDYSHHRAWKKSDWLK 153 (231)
T ss_dssp EEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSH------HHHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred cccccccccccccCC--HHHHHHHHHHhcCCCcEEEEEeCCCCCCH------HHHHHHHHHHhhcccCcccCCCHHHHHH
Confidence 99999999999954 56899999999999999999988765421 111122211111 112446678999999
Q ss_pred HHHHcCCceeEEee
Q 018366 332 LAIAAGFKHINFAS 345 (357)
Q Consensus 332 ll~~aGf~~~~~~~ 345 (357)
+|+++||+++++..
T Consensus 154 ~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 154 MLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHTCEEEEEEE
T ss_pred HHHHCCCEEEEEEE
Confidence 99999999887643
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.81 E-value=6.4e-20 Score=162.25 Aligned_cols=157 Identities=14% Similarity=0.223 Sum_probs=119.7
Q ss_pred chhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-
Q 018366 178 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD- 248 (357)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~- 248 (357)
.......+....+ +++..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. ++++++.+|+.+
T Consensus 52 ~~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l 129 (282)
T d2o57a1 52 DEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 129 (282)
T ss_dssp HHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccc
Confidence 3334445555545 7788999999999999999999875 578999998 8888777652 589999999988
Q ss_pred CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCH
Q 018366 249 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTK 326 (357)
Q Consensus 249 ~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 326 (357)
++|.+ |+|++..++||+++ ..++|++++++|||||++++.+....+..... ......+ .. . .....+.
T Consensus 130 ~~~~~sfD~V~~~~~l~h~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~---~~-~-~~~~~s~ 199 (282)
T d2o57a1 130 PCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPILD---RI-K-LHDMGSL 199 (282)
T ss_dssp SSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHHH---HH-T-CSSCCCH
T ss_pred cccccccchhhccchhhhccC--HHHHHHHHHHhcCCCcEEEEEEeecCCCCchh---HHHHHHH---Hh-c-cCCCCCH
Confidence 77765 99999999999954 56899999999999999999998776532221 1111111 11 1 2345688
Q ss_pred HHHHHHHHHcCCceeEEeec
Q 018366 327 KEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~ 346 (357)
+++.++++++||+.+.+...
T Consensus 200 ~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 200 GLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHcCCceEEEEEC
Confidence 99999999999998887654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.80 E-value=8.8e-20 Score=158.51 Aligned_cols=148 Identities=17% Similarity=0.288 Sum_probs=116.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCC--C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~--D 254 (357)
..+++.++ ..+..+|||+|||+|.++..++..+.+ .++++|. +.+++.|++ .+++++.++|+.+ +++.+ |
T Consensus 83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 35666666 567789999999999999998887655 7888898 888888765 2558899999987 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++.+++||+++++..++|++++++|||||+++|.+........ ..+. ..+...+|.++|+++|+
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~-----~d~~~~rs~~~~~~l~~ 226 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHHHH
T ss_pred eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc-----cCCceeCCHHHHHHHHH
Confidence 999999999999999999999999999999999999886543210 1110 11344579999999999
Q ss_pred HcCCceeEEeec
Q 018366 335 AAGFKHINFASC 346 (357)
Q Consensus 335 ~aGf~~~~~~~~ 346 (357)
++||++++....
T Consensus 227 ~aGf~ii~~~~q 238 (254)
T d1xtpa_ 227 ESGVRVVKEAFQ 238 (254)
T ss_dssp HHTCCEEEEEEC
T ss_pred HcCCEEEEEEee
Confidence 999999887553
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=3.5e-19 Score=153.08 Aligned_cols=151 Identities=18% Similarity=0.327 Sum_probs=116.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG-- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-- 253 (357)
-+++..+ +++..+|||||||+|.++..+++..+ +++++|+ +.+++.|++. +++.++.+|+.+ +++++
T Consensus 7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 3556666 88899999999999999999999864 6889998 7888877652 579999999988 77765
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh-hcCCCccCCHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT-RDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~e~~~l 332 (357)
|+|++..++||+++ ...+|++++++|||||++++.+...+..+ . ...+++..... .....+..+..+|..+
T Consensus 84 D~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T d1xxla_ 84 DIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDP---V---LDEFVNHLNRLRDPSHVRESSLSEWQAM 155 (234)
T ss_dssp EEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred ceeeeeceeecccC--HHHHHHHHHHeeCCCcEEEEEEcCCCCCH---H---HHHHHHHHHhhCCCcccccCCHHHHHHH
Confidence 99999999999954 57999999999999999999987655421 1 11122211111 1124566789999999
Q ss_pred HHHcCCceeEEee
Q 018366 333 AIAAGFKHINFAS 345 (357)
Q Consensus 333 l~~aGf~~~~~~~ 345 (357)
++++||.+.++..
T Consensus 156 ~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 156 FSANQLAYQDIQK 168 (234)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHCCCceeEEEE
Confidence 9999998766543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=8.3e-20 Score=155.76 Aligned_cols=139 Identities=17% Similarity=0.254 Sum_probs=112.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--CEEEeccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG--DAILMKWI 261 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~--D~i~~~~~ 261 (357)
..+..+|||||||+|.++..+++..+. +++++|+ +.+++.|++. ++++|+++|+.+ +.+.. |+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 456689999999999999998877664 7899998 8898887652 457999999988 55443 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHI 341 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 341 (357)
+||+++++..++|+++++.|||||++++.+....+... ++ . ......++.++|+++|+++||+++
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----------~~----~-~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----------LD----D-VDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----------EE----T-TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----------cc----c-CCceeeCCHHHHHHHHHHcCCEEE
Confidence 99999988889999999999999999999987654210 00 0 013445789999999999999998
Q ss_pred EEeec
Q 018366 342 NFASC 346 (357)
Q Consensus 342 ~~~~~ 346 (357)
+....
T Consensus 202 ~~~~q 206 (222)
T d2ex4a1 202 AEERQ 206 (222)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=6.2e-19 Score=152.55 Aligned_cols=152 Identities=11% Similarity=0.080 Sum_probs=116.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~- 253 (357)
..+.+.+. +.+..+|||||||+|..+..+++.++ .+++++|+ +.+++.+++. ++|+|+.+|+.+..+++
T Consensus 23 ~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~ 100 (245)
T d1nkva_ 23 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 100 (245)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCc
Confidence 45666666 77889999999999999999998875 79999999 8888877652 57999999998854544
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+|++..++||+++ ..++|++++++|||||++++.++.....+.... ..... .. .......+..++..+
T Consensus 101 fD~v~~~~~~~~~~d--~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~---~~~~~---~~--~~~~~~~~~~~~~~~ 170 (245)
T d1nkva_ 101 CDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE---IAQAC---GV--SSTSDFLTLPGLVGA 170 (245)
T ss_dssp EEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH---HHHTT---TC--SCGGGSCCHHHHHHH
T ss_pred eeEEEEEehhhccCC--HHHHHHHHHHHcCcCcEEEEEeccccCCCChHH---HHHHh---cc--CCCcccCCHHHHHHH
Confidence 99999999999964 468999999999999999999887654322111 11111 10 112335688999999
Q ss_pred HHHcCCceeEEeec
Q 018366 333 AIAAGFKHINFASC 346 (357)
Q Consensus 333 l~~aGf~~~~~~~~ 346 (357)
++++||+++.....
T Consensus 171 ~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 171 FDDLGYDVVEMVLA 184 (245)
T ss_dssp HHTTTBCCCEEEEC
T ss_pred HHHcCCEEEEEEeC
Confidence 99999998876544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1.7e-18 Score=145.98 Aligned_cols=137 Identities=21% Similarity=0.180 Sum_probs=102.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDH 269 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~ 269 (357)
+..+|||||||+|.++..+. +.+++|+ +.+++.++++ +++++.+|+.+ +.+++ |+|++.++|||+++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d-- 106 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD-- 106 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-ccccccccccccccccccccccccccccccccc--
Confidence 44689999999999988874 2477888 8899888753 68999999988 66654 99999999999954
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
..++|++++++|+|||++++.++..+. ..... ............+...+|.+++.++|+++||+++++..
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGIVDRES-----FLGRE-YEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSS-----HHHHH-HHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccchhhhhhcCCCCceEEEEecCCcc-----hhHHh-hhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 568999999999999999998874432 00000 00000000111245668999999999999999888654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=7.6e-18 Score=147.79 Aligned_cols=162 Identities=17% Similarity=0.270 Sum_probs=123.1
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~ 253 (357)
.+.+++.+. ++++.+|||||||.|.++..+++.++ .+++++|+ ++.++.+++ ..++.+...|..+ ++..
T Consensus 41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~~~~ 117 (280)
T d2fk8a1 41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP 117 (280)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-hccc
Confidence 356888887 88899999999999999999888874 69999998 777766654 1457777777654 3333
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCC----C-CchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPE----V-SSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
|.|++..+++|+++++...+|++++++|||||+++|.+.+...... . ..........++...-.++++..++.+
T Consensus 118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~ 197 (280)
T d2fk8a1 118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE 197 (280)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchH
Confidence 9999999999999888899999999999999999998866543210 0 000011122344444446789999999
Q ss_pred HHHHHHHHcCCceeEEeec
Q 018366 328 EFTELAIAAGFKHINFASC 346 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~ 346 (357)
++.+.++++||+++++...
T Consensus 198 ~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 198 MMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp HHHHHHHHTTCBCCCCEEC
T ss_pred hhhhhHHhhccccceeeec
Confidence 9999999999999887654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=4.3e-17 Score=142.90 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=124.8
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~ 253 (357)
.+.+++.+. +++..+|||||||.|.++..+++.+ +++++++++ +..++.+++ .+++++..+|+.+. |..
T Consensus 51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~-~~~ 127 (285)
T d1kpga_ 51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-DEP 127 (285)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-CCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc-ccc
Confidence 356778787 8889999999999999999999998 589999998 655555433 26799999998652 333
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCC-----CCCCchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEI-----PEVSSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
|.|++..++.|+..++...++++++++|||||++++.+.+.... ...+.........++...-.+++|..++..
T Consensus 128 fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~ 207 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 207 (285)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred ccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChh
Confidence 99999999999988878899999999999999999988764321 111111111223334444446789999999
Q ss_pred HHHHHHHHcCCceeEEeecC
Q 018366 328 EFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~~ 347 (357)
++..+++++||+++++...+
T Consensus 208 ~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 208 MVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHHHHHTTTCEEEEEEECH
T ss_pred hHHHHHHHhchhhcccccch
Confidence 99999999999998887653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=6.1e-17 Score=142.37 Aligned_cols=164 Identities=17% Similarity=0.252 Sum_probs=122.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~ 253 (357)
.+.+++.+. ++++.+|||||||.|.++..++++++ ++++++++ ++.++.+++ ..++.+...|...+-...
T Consensus 50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 356778887 88899999999999999999999885 69999998 655555443 256888888864322223
Q ss_pred CEEEeccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCC-----CchhhhhhhhhhhhhhhcCCC
Q 018366 254 DAILMKWILHCWDD-------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEV-----SSSARETSLLDVLLMTRDGGG 321 (357)
Q Consensus 254 D~i~~~~~lh~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 321 (357)
|.|++..++.|+++ ++...++++++++|||||++++...+.++.... ..........++...-.++++
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg 207 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 207 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC
Confidence 99999999999876 457899999999999999999988876542100 000011122333333346789
Q ss_pred ccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 322 RERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 322 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
..+|..++...++++||++......+
T Consensus 208 ~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 208 RLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCHHHHHhhhcccccccceeeecc
Confidence 99999999999999999998887654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.70 E-value=2.1e-17 Score=145.62 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=111.1
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~- 253 (357)
+.+++.+..++++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++|+.+|+.+ ++++.
T Consensus 16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~f 95 (281)
T d2gh1a1 16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 95 (281)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCc
Confidence 345554433567889999999999999999998874 68999998 7888877652 368899999988 55555
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCC-----CCCchhh---hhhhhhhhhhhhcCCCc-cC
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIP-----EVSSSAR---ETSLLDVLLMTRDGGGR-ER 324 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~-~~ 324 (357)
|+|++.+++||+++ ...+|++++++|||||++++.|+...... ....... ...+...........+. ..
T Consensus 96 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (281)
T d2gh1a1 96 DIAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 173 (281)
T ss_dssp EEEEEESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTT
T ss_pred eEEEEehhhhcCCC--HHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999965 46899999999999999999986421100 0000000 11111111111011222 22
Q ss_pred CHHHHHHHHHHcCCceeEEeec
Q 018366 325 TKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 325 t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
...++..+++++||+.+++...
T Consensus 174 i~~~l~~~l~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 174 IGMKIPIYLSELGVKNIECRVS 195 (281)
T ss_dssp GGGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEEEe
Confidence 2356788999999999876543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.68 E-value=1.1e-16 Score=136.40 Aligned_cols=147 Identities=14% Similarity=0.220 Sum_probs=103.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCC-CCCCC-CEEEeccccccCC
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD-SVPEG-DAILMKWILHCWD 266 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~~ 266 (357)
+..+.+|||||||+|.++..+++... +++++|+ +.+++.+++. .++.++.+|+.+ +.+.. |+|++.++|||++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 33466899999999999999988764 5888888 7888888653 569999999877 44444 9999999999995
Q ss_pred hhHHHHHHHHHH-HhCCCCCEEEEEeeccCCCCCC-----CchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCce
Q 018366 267 DDHCLRILKNCY-KAIPDNGKVIVMNSIVPEIPEV-----SSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKH 340 (357)
Q Consensus 267 ~~~~~~~L~~~~-~~LkpgG~l~i~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 340 (357)
+...+|++++ ++|||||++++..+....-... ............... ..+.+.++.++++++++++||++
T Consensus 96 --d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~l~~~l~~~Gf~i 171 (225)
T d2p7ia1 96 --DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA--HGHRCTYALDTLERDASRAGLQV 171 (225)
T ss_dssp --SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHH--TTCCCCCCHHHHHHHHHHTTCEE
T ss_pred --CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccc--eeeeeccCHHHHHHHHHHCCCEE
Confidence 4578899998 7899999999976532210000 000000000000011 12445679999999999999998
Q ss_pred eEEe
Q 018366 341 INFA 344 (357)
Q Consensus 341 ~~~~ 344 (357)
++..
T Consensus 172 ~~~~ 175 (225)
T d2p7ia1 172 TYRS 175 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=7.2e-17 Score=139.74 Aligned_cols=106 Identities=19% Similarity=0.332 Sum_probs=87.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D 254 (357)
..+++.+. .++..+|||||||+|.++..+++.. .+++++|+ +.|++.|++. .+++++.+|+.+ ++++. |
T Consensus 31 ~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD 107 (251)
T d1wzna1 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (251)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccccc
Confidence 34555555 4566799999999999999999874 57899998 8899988753 479999999988 66655 9
Q ss_pred EEEec-cccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 255 AILMK-WILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 255 ~i~~~-~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+|++. ++++|++.++..++|+++++.|||||++++..
T Consensus 108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99885 68888888888999999999999999998843
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.67 E-value=4.7e-17 Score=118.85 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=80.7
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccC
Q 018366 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS 95 (357)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 95 (357)
+..+++..|++++.||+.+++|++|+++||||.|.+. ||.|++|||+++++ ++.+.+.+.|+||+|++.|++.+.. +
T Consensus 5 e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~-~~~~~~~L~RlLR~L~~~gi~~~~~-~ 82 (101)
T d1fp2a1 5 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT-K 82 (101)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE-S
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCC-CCccchHHHHHHHHHHhCCceeeec-C
Confidence 4457889999999999999999999999999999763 49999999999998 3334567999999999999998653 3
Q ss_pred CCcceecchhchhhhcC
Q 018366 96 GERLYGLTPVSKYFVSN 112 (357)
Q Consensus 96 ~~~~y~~t~~~~~l~~~ 112 (357)
++++|++|+.|+.|+.+
T Consensus 83 ~~~~Y~lt~~s~~Lv~~ 99 (101)
T d1fp2a1 83 EEESYALTVASELLVRG 99 (101)
T ss_dssp SSEEEEECHHHHTTSTT
T ss_pred CCCeEecCHHHHHhhcC
Confidence 46799999999977764
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=6.1e-16 Score=131.36 Aligned_cols=137 Identities=12% Similarity=0.070 Sum_probs=106.3
Q ss_pred hcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC----CCCCceEEEcCCCCC--CCCC--CEEEe
Q 018366 188 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFDS--VPEG--DAILM 258 (357)
Q Consensus 188 ~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~v~~~~~D~~~~--~p~~--D~i~~ 258 (357)
.++ +++..+|||+|||+|..+..+++..|+..++++|+ |.+++.++ ..+++..+.+|...+ .... |++++
T Consensus 69 ~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i 147 (230)
T d1g8sa_ 69 VMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI 147 (230)
T ss_dssp CCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred hCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence 344 67889999999999999999999999999999999 77776554 357788888888773 2222 77777
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGF 338 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 338 (357)
...+|++ ++...+++++++.|||||++++.......+...+ .....+++.+.|+++||
T Consensus 148 ~~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~--------------------~~~~~~e~~~~L~~aGF 205 (230)
T d1g8sa_ 148 YEDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD--------------------PKEIFKEQKEILEAGGF 205 (230)
T ss_dssp EECCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC--------------------HHHHHHHHHHHHHHHTE
T ss_pred eccccch--HHHHHHHHHHHHhcccCceEEEEeeccccCCCCC--------------------HHHHHHHHHHHHHHcCC
Confidence 7788877 5677899999999999999999876654432111 11134678899999999
Q ss_pred ceeEEeecC
Q 018366 339 KHINFASCV 347 (357)
Q Consensus 339 ~~~~~~~~~ 347 (357)
++++.....
T Consensus 206 ~ive~idL~ 214 (230)
T d1g8sa_ 206 KIVDEVDIE 214 (230)
T ss_dssp EEEEEEECT
T ss_pred EEEEEecCC
Confidence 999988765
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=2.5e-16 Score=133.83 Aligned_cols=99 Identities=16% Similarity=0.289 Sum_probs=85.4
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC--CEEEeccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG--DAILMKWILH 263 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~--D~i~~~~~lh 263 (357)
++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ..+.++.+|+.+ +++.+ |+|++.+++|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 35679999999999999999985 568999998 8899887652 468889999988 66654 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+++++..++|+++.++|||||++++....
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999888899999999999999999987654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.62 E-value=9.2e-16 Score=127.87 Aligned_cols=107 Identities=12% Similarity=0.178 Sum_probs=87.3
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-CCCCC-CE
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-SVPEG-DA 255 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p~~-D~ 255 (357)
++.... +..+.+|||||||+|..+..++++. .+++++|+ +.+++.+++ .+++++...|+.+ +.+.. |+
T Consensus 22 ~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 98 (198)
T d2i6ga1 22 VLAAAK-VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDF 98 (198)
T ss_dssp HHHHHT-TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEE
T ss_pred HHHHcc-cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccE
Confidence 333333 3345699999999999999999985 57888998 778876653 2568999999988 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|++..++||+++++..++|++++++|+|||++++.....
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 99 ILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 999999999999999999999999999999999987653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.59 E-value=3.2e-15 Score=124.17 Aligned_cols=110 Identities=13% Similarity=0.104 Sum_probs=90.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------------------CCceEEEc
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------AGVEHVGG 244 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~v~~~~~ 244 (357)
.+...+. ++++.+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++. ..+.+..+
T Consensus 11 ~~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 11 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 4455565 677889999999999999999997 578999998 8888887642 24678888
Q ss_pred CCCCCCC--C-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 245 NMFDSVP--E-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 245 D~~~~~p--~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
|+++..+ . . |+|++..++|++++++...+++++++.|||||++++.......
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ 143 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 8877332 2 2 9999999999999988999999999999999999887765543
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.58 E-value=2.5e-15 Score=107.65 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC
Q 018366 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE 97 (357)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 97 (357)
..++++.+++++.+++.+++|++|+++||||.|.+ ||.|++|||+++|+ +++.+.|+||+|++.|++++.. ++.
T Consensus 4 ~d~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~-gp~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~~~-d~~ 77 (92)
T d1qzza1 4 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGE-KQG 77 (92)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCC-C-C
T ss_pred cchhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC-CCCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeeeec-CCC
Confidence 34788999999999999999999999999999997 69999999999999 9999999999999999999752 235
Q ss_pred cceecchhchhhhc
Q 018366 98 RLYGLTPVSKYFVS 111 (357)
Q Consensus 98 ~~y~~t~~~~~l~~ 111 (357)
+.|++|+.+..+.+
T Consensus 78 ~~~~~t~~g~lL~d 91 (92)
T d1qzza1 78 RPLRPTRLGMLLAD 91 (92)
T ss_dssp CCCEECTTGGGGST
T ss_pred ceecccHHHHhccC
Confidence 57888999887654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.57 E-value=8.6e-16 Score=132.51 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CEEEec-ccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DAILMK-WILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~i~~~-~~lh~ 264 (357)
++.+|||||||+|.++..+++... +++++|+ ++|++.|+++ .+++++.+|+.+ +.+.. |+|+|. +++++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence 457999999999999999999864 7889998 8898887652 479999999987 45555 998875 67777
Q ss_pred C-ChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 265 W-DDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 265 ~-~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
+ +.++..++|+++++.|||||.+++
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 6 456788999999999999999886
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.56 E-value=5.1e-15 Score=104.82 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=71.7
Q ss_pred HHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 26 MQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 26 ~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
+..+.+++.+++|++|+++||||.|.+ ||.|++|||+++|+ ++..+.|+||+|++.|++++. +++.|++|+.
T Consensus 6 l~~l~~~~~~~aL~~av~L~ifd~l~~-gp~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e~---~~~~y~lt~~ 77 (85)
T d1tw3a1 6 LIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED---APGEFVPTEV 77 (85)
T ss_dssp HHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---ETTEEEECTT
T ss_pred HHHHHchHHHHHHHHHHHcCcHHHhcc-CCCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEec---CCCeEecCHH
Confidence 445588899999999999999999987 69999999999999 999999999999999999963 4789999999
Q ss_pred chhhhcC
Q 018366 106 SKYFVSN 112 (357)
Q Consensus 106 ~~~l~~~ 112 (357)
++.|.++
T Consensus 78 s~~L~~D 84 (85)
T d1tw3a1 78 GELLADD 84 (85)
T ss_dssp GGGGSTT
T ss_pred HHHhhcC
Confidence 9988764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.7e-14 Score=122.82 Aligned_cols=130 Identities=11% Similarity=-0.003 Sum_probs=101.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----------------------CCCceEEEcCCC
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMF 247 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~D~~ 247 (357)
..+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..++++.++|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 556789999999999999999986 568999999 777775432 146889999998
Q ss_pred C--CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCC-c
Q 018366 248 D--SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGG-R 322 (357)
Q Consensus 248 ~--~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 322 (357)
+ +.+.+ |+|+...++|++++++...+++++.++|||||++++.....+..... |. .
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~-------------------gpp~ 181 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP-------------------GPPF 181 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC-------------------CSSC
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC-------------------CCCC
Confidence 7 23333 99999999999999999999999999999999998887765432110 11 2
Q ss_pred cCCHHHHHHHHHHcCCceeEE
Q 018366 323 ERTKKEFTELAIAAGFKHINF 343 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~ 343 (357)
..+.+++.++|.. +|.+..+
T Consensus 182 ~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 182 YVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp CCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCHHHHHHHhcC-CCEEEEE
Confidence 3478999999964 6765443
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.1e-14 Score=126.13 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=98.1
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHh----hCCCC--eEEEeec-hHHHHhCCCC-------CCceE--EEcC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITS----KYPQI--KAVNFDL-PHVVQDAPSY-------AGVEH--VGGN 245 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~----~~p~~--~~~~~D~-~~~~~~a~~~-------~~v~~--~~~D 245 (357)
...++..+...++..+|||||||+|.++..+++ .+++. +++++|. +.+++.+++. ..+.+ ...+
T Consensus 28 l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 107 (280)
T d1jqea_ 28 LPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKET 107 (280)
T ss_dssp HHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSC
T ss_pred HHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhh
Confidence 344555554334556899999999998777655 45554 4688998 6777766531 33333 3333
Q ss_pred CC-------CCCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhh-hh
Q 018366 246 MF-------DSVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL-LM 315 (357)
Q Consensus 246 ~~-------~~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~ 315 (357)
+. .+.+.. |+|++.+++||+++ ..++|++++++|+|||.++++....+. ... ..+..+. ..
T Consensus 108 ~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~i~~~~~~~-----~~~--~l~~~~~~~~ 178 (280)
T d1jqea_ 108 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSS-----GWD--KLWKKYGSRF 178 (280)
T ss_dssp HHHHHHHHTTSSSCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTS-----HHH--HHHHHHGGGS
T ss_pred hhhhcchhcccCCCCceeEEEEccceecCCC--HHHHHHHHHhhCCCCCEEEEEEecCcc-----hHH--HHHHHHHHhc
Confidence 21 122333 99999999999954 569999999999999999997653211 111 1111111 11
Q ss_pred hhcCCCccCCHHHHHHHHHHcCCceeEE
Q 018366 316 TRDGGGRERTKKEFTELAIAAGFKHINF 343 (357)
Q Consensus 316 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 343 (357)
........++.+++.++|.+.||+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 179 PQDDLCQYITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp CCCTTSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred CCCcccccCCHHHHHHHHHHCCCceEEE
Confidence 1112345678999999999999985443
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=8.3e-15 Score=125.90 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=79.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEe-ccccccCCh
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILM-KWILHCWDD 267 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~-~~~lh~~~~ 267 (357)
+++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++.....++.+|+.+ +++.+ |+|++ ..++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 35679999999999999999886 568999998 8899988875445677889887 67654 99987 578999965
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. .++|++++++|||||.+++..+
T Consensus 119 ~--~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 119 K--DKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp H--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred H--HHHHHHHHhhcCcCcEEEEEEC
Confidence 4 5799999999999999998654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.49 E-value=7.7e-14 Score=116.56 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=81.2
Q ss_pred cccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCC-C--CEEEec
Q 018366 189 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPE-G--DAILMK 259 (357)
Q Consensus 189 l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~-~--D~i~~~ 259 (357)
++ +++..+|||+|||+|..+..+++..|+.+++++|+ |.+++.+++ .+++.++.+|... +.+. . ++.++.
T Consensus 52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 55 77889999999999999999999999889999999 888887654 4789999999877 2332 1 332333
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+.+++. .+...+++++++.|||||++++.....
T Consensus 131 ~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~ 163 (209)
T d1nt2a_ 131 QDIAQK--NQIEILKANAEFFLKEKGEVVIMVKAR 163 (209)
T ss_dssp ECCCST--THHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred ecccCh--hhHHHHHHHHHHHhccCCeEEEEEEcc
Confidence 445555 456789999999999999999987543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2.5e-14 Score=124.72 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=80.3
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCC-CCCCC--CEEEeccccccCCh
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDD 267 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~ 267 (357)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++.+..+|+.+ +++++ |+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 4567999999999999999999999999999999 888888765 4789999999988 77665 99999888876
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+++++++|||||++++..+.
T Consensus 160 ------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 160 ------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp ------HHHHHHHEEEEEEEEEEEEC
T ss_pred ------HHHHHHHhCCCcEEEEEeeC
Confidence 45688999999999998764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.47 E-value=4.4e-14 Score=122.07 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=82.7
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCC-C-C
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVP-E-G 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p-~-~ 253 (357)
+++.+. ++..+|||||||+|..+..+++... .+++++|+ +.+++.|+++ .++.+..+|+.. +.+ . .
T Consensus 17 lI~~~~--~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~ 93 (252)
T d1ri5a_ 17 LIRLYT--KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKE 93 (252)
T ss_dssp HHHHHC--CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSC
T ss_pred HHHHhC--CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccccc
Confidence 444443 4567999999999999999988754 37899998 8888887531 368899999976 432 3 3
Q ss_pred -CEEEeccccccC--ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 -DAILMKWILHCW--DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 -D~i~~~~~lh~~--~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++..++||+ +.++...+|+++.+.|||||++++..
T Consensus 94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 999999999996 34667899999999999999998854
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.47 E-value=8.6e-14 Score=115.27 Aligned_cols=104 Identities=16% Similarity=0.302 Sum_probs=82.2
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC--------CCCceEEEcCCCCCCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~~~p~~- 253 (357)
-+++.++ ..+..+|||+|||+|.++..+++..++ ++++|+ +.+++.+++ ..++++..+|++++.++.
T Consensus 43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~--v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~ 119 (194)
T d1dusa_ 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVKS--TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSE--EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhccc--cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence 3566666 566789999999999999999998875 556666 777777754 146899999998866554
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++.-++|+. .+...++++++.+.|||||+++++.
T Consensus 120 fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 120 YNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 999998888765 3446789999999999999998753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.4e-14 Score=125.49 Aligned_cols=138 Identities=13% Similarity=0.104 Sum_probs=94.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CC----------------------------
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AG---------------------------- 238 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~---------------------------- 238 (357)
.++.+|||||||+|.++..++.... .+++++|+ +.+++.+++. ..
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 4567999999999998876665532 36899998 7888876531 00
Q ss_pred --c-eEEEcCCCC-----CCCCC--CEEEeccccccCCh--hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhh
Q 018366 239 --V-EHVGGNMFD-----SVPEG--DAILMKWILHCWDD--DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARE 306 (357)
Q Consensus 239 --v-~~~~~D~~~-----~~p~~--D~i~~~~~lh~~~~--~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~ 306 (357)
+ .....+... +.+.+ |+|++..++||++. ++...+++++++.|||||++++.+....... .
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~-----~-- 201 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSY-----M-- 201 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE-----E--
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccc-----e--
Confidence 0 111122211 33443 99999999999753 5677999999999999999999887533210 0
Q ss_pred hhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 307 TSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
..+ . ......+|.++++++|++|||+++++..
T Consensus 202 --~~~---~--~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 233 (257)
T d2a14a1 202 --VGK---R--EFSCVALEKGEVEQAVLDAGFDIEQLLH 233 (257)
T ss_dssp --ETT---E--EEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred --ecc---c--cccccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 0 0023346899999999999999888743
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=6.1e-14 Score=120.40 Aligned_cols=142 Identities=17% Similarity=0.261 Sum_probs=100.4
Q ss_pred HHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEE
Q 018366 170 YHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVG 243 (357)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~ 243 (357)
|..+.+..+...++.+.+.. .+..+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ -++++..
T Consensus 99 FGTG~H~TT~l~l~~l~~~~---~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~n~~~~~~~~ 173 (254)
T d2nxca1 99 FGTGHHETTRLALKALARHL---RPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFLE 173 (254)
T ss_dssp ---CCSHHHHHHHHHHHHHC---CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCEEEE
T ss_pred cCccccchhhHHHHHHHhhc---CccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHHcCCceeEEe
Confidence 44433444444444444332 356899999999999999887754 57889998 8888887752 3567888
Q ss_pred cCCCCCCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCC
Q 018366 244 GNMFDSVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGG 321 (357)
Q Consensus 244 ~D~~~~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (357)
+|+.+..+.+ |+|+++... +...++++.+++.|||||++++.+...+
T Consensus 174 ~d~~~~~~~~~fD~V~ani~~-----~~l~~l~~~~~~~LkpGG~lilSgil~~-------------------------- 222 (254)
T d2nxca1 174 GSLEAALPFGPFDLLVANLYA-----ELHAALAPRYREALVPGGRALLTGILKD-------------------------- 222 (254)
T ss_dssp SCHHHHGGGCCEEEEEEECCH-----HHHHHHHHHHHHHEEEEEEEEEEEEEGG--------------------------
T ss_pred ccccccccccccchhhhcccc-----ccHHHHHHHHHHhcCCCcEEEEEecchh--------------------------
Confidence 8877654443 999886443 3456889999999999999998654211
Q ss_pred ccCCHHHHHHHHHHcCCceeEEeecCCce
Q 018366 322 RERTKKEFTELAIAAGFKHINFASCVCNL 350 (357)
Q Consensus 322 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 350 (357)
..+++.+.++++||+.++.....+..
T Consensus 223 ---~~~~v~~~~~~~Gf~~~~~~~~~~Wv 248 (254)
T d2nxca1 223 ---RAPLVREAMAGAGFRPLEEAAEGEWV 248 (254)
T ss_dssp ---GHHHHHHHHHHTTCEEEEEEEETTEE
T ss_pred ---hHHHHHHHHHHCCCEEEEEEEECCEE
Confidence 24677889999999999887765543
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.45 E-value=1.4e-13 Score=100.31 Aligned_cols=95 Identities=55% Similarity=0.812 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc
Q 018366 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 94 (357)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g---~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 94 (357)
+++..-..++++.+++.+++|++|++|||||+|.+.| +.|..||+.++..++|..+..+.|+||.|++.|+++....
T Consensus 4 dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~ 83 (107)
T d1kyza1 4 DEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVR 83 (107)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeee
Confidence 4555567779999999999999999999999999765 6799999999988544445679999999999999987533
Q ss_pred CC-----CcceecchhchhhhcC
Q 018366 95 SG-----ERLYGLTPVSKYFVSN 112 (357)
Q Consensus 95 ~~-----~~~y~~t~~~~~l~~~ 112 (357)
.. ...|.+||.+++|+.+
T Consensus 84 ~~~dg~~~~~Y~LTpvsk~Lv~d 106 (107)
T d1kyza1 84 TQQDGKVQRLYGLATVAKYLVKN 106 (107)
T ss_dssp ECTTSCEEEEEEECHHHHHHSCC
T ss_pred cCCCCCeeeEEecchhHHhhcCC
Confidence 21 2369999999988864
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.5e-14 Score=120.16 Aligned_cols=133 Identities=17% Similarity=0.139 Sum_probs=90.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC---CCCCC--CEEE-----
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD---SVPEG--DAIL----- 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~p~~--D~i~----- 257 (357)
.+.+|||||||+|..+..+++..+ .+++++|+ |.+++.+++. .++.++.+|... +++.+ |.|+
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 457999999999999999998765 37888998 8888887652 456777776543 45543 6665
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
....++|+ .+...++++++++|||||++++.+...... .....++ .......+.+...+.++|
T Consensus 132 ~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~l~~ag 194 (229)
T d1zx0a1 132 LSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYS--------DITIMFEETQVPALLEAG 194 (229)
T ss_dssp CBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCS--------CHHHHHHHHTHHHHHHTT
T ss_pred cccccccc--cCHHHHHHHHHHHcCCCcEEEEEecCCcch-------hhhhhhh--------hcchhhhhHHHHHHHHCC
Confidence 56777777 667789999999999999998854322110 0000000 111112455667788899
Q ss_pred CceeEEe
Q 018366 338 FKHINFA 344 (357)
Q Consensus 338 f~~~~~~ 344 (357)
|+..++.
T Consensus 195 F~~~~i~ 201 (229)
T d1zx0a1 195 FRRENIR 201 (229)
T ss_dssp CCGGGEE
T ss_pred CeeEEEE
Confidence 9876653
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.40 E-value=7.7e-13 Score=96.53 Aligned_cols=96 Identities=45% Similarity=0.629 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCC-C---CCHHHHHHHhCcCCCCCc---chHHHHHHHHhcCcce
Q 018366 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG-K---LSAPEIAAQLQAQNVKAP---MMLDRMLRLLVSHRVL 89 (357)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g-~---~t~~~la~~~~~~~~~~~---~~l~~~L~~L~~~g~l 89 (357)
++++..-..++++.+++.+++|++|++|||||.|.+.| | +|++||+.++.. ++.++ ..|.|+||.|++.|++
T Consensus 2 ~~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~-~~~~p~~~~~L~RiLRlLas~~vf 80 (110)
T d1fp1d1 2 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPA-STQHSDLPNRLDRMLRLLASYSVL 80 (110)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCG-GGCCTTHHHHHHHHHHHHHHTTSE
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCC-CCCCccHHHHHHHHHHHHHHcCcc
Confidence 45677888999999999999999999999999999755 3 799999999876 22244 3699999999999999
Q ss_pred eeeccCC-----CcceecchhchhhhcCC
Q 018366 90 ECSVSSG-----ERLYGLTPVSKYFVSNK 113 (357)
Q Consensus 90 ~~~~~~~-----~~~y~~t~~~~~l~~~~ 113 (357)
......+ ...|.+||.+++|+.++
T Consensus 81 ~~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 81 TSTTRTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp EEEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred ccccccCCCCCeeeEEecchhhHhhcCCC
Confidence 8653321 23699999999988754
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.9e-13 Score=117.51 Aligned_cols=138 Identities=13% Similarity=0.117 Sum_probs=94.7
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CC---------------------------
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AG--------------------------- 238 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~--------------------------- 238 (357)
..++.+|||||||+|.+....+..... +++++|. +.+++.+++. ..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 345689999999999876544444433 7999998 8888766421 00
Q ss_pred ----ceEEEcCCCCC-------CCC-C-CEEEeccccccCC--hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCch
Q 018366 239 ----VEHVGGNMFDS-------VPE-G-DAILMKWILHCWD--DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSS 303 (357)
Q Consensus 239 ----v~~~~~D~~~~-------~p~-~-D~i~~~~~lh~~~--~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~ 303 (357)
......|+.++ .+. . |+|++..+||+.+ .++..++|++++++|||||+|++.+.......
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~----- 205 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY----- 205 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE-----
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccc-----
Confidence 12344566541 112 2 9999999999975 24678999999999999999999887543210
Q ss_pred hhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 304 ARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
...... + .....|.++++++|+++||++++..
T Consensus 206 -----~~~~~~---~-~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 206 -----LAGEAR---L-TVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp -----EETTEE---E-ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred -----ccCCcc---c-ccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 000000 0 1223699999999999999987654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=6.7e-13 Score=118.66 Aligned_cols=111 Identities=13% Similarity=0.208 Sum_probs=89.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---------------CCCceEEEcCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM 246 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D~ 246 (357)
..+++.+. +++..+|||||||+|..+..+++.++..+++++|+ +.+++.+++ ..+++++.+|+
T Consensus 141 ~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~ 219 (328)
T d1nw3a_ 141 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 219 (328)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred HHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence 46777777 77888999999999999999999998888999998 777766542 25799999999
Q ss_pred CC-CCCC----CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCC
Q 018366 247 FD-SVPE----GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEI 297 (357)
Q Consensus 247 ~~-~~p~----~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~ 297 (357)
.+ ++.+ +|+|++.+.+ ++ ++....|+++.+.|||||++++.+.+.+.+
T Consensus 220 ~~~~~~~~~~~advi~~~~~~-f~--~~~~~~l~e~~r~LKpGg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 220 LSEEWRERIANTSVIFVNNFA-FG--PEVDHQLKERFANMKEGGRIVSSKPFAPLN 272 (328)
T ss_dssp TSHHHHHHHHHCSEEEECCTT-TC--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred cccccccccCcceEEEEccee-cc--hHHHHHHHHHHHhCCCCcEEEEecccCCCC
Confidence 87 4433 3888876655 44 677889999999999999999988766543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.34 E-value=1.1e-12 Score=108.92 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=78.0
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC---CCCCC--CEEEeccccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD---SVPEG--DAILMKWILH 263 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~p~~--D~i~~~~~lh 263 (357)
-.|||||||+|.++..+++.+|+..++++|+ +.++..+.+ ..+|.++.+|+.. .++.+ |.|++.....
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P 110 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP 110 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence 4799999999999999999999999999998 666665533 3689999999876 25554 9988887776
Q ss_pred cCChhH------HHHHHHHHHHhCCCCCEEEEEe
Q 018366 264 CWDDDH------CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 264 ~~~~~~------~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+....+ ...+|+.++++|||||.|.|.+
T Consensus 111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 654333 1489999999999999999864
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.34 E-value=4.2e-13 Score=114.57 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=78.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~ 253 (357)
..++..++ ..++.+|||+|||+|.++..+++. .|+.+++.+|. +++++.|++ ..++++..+|+.+.+++.
T Consensus 75 ~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 75 SYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp ------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence 34566666 788899999999999999999986 57889999998 777777764 257999999998866654
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|.|++ +.+++ ..+|+++.++|||||++++..+
T Consensus 154 ~fD~V~l-----d~p~p--~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 154 MYDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEES
T ss_pred eeeeeee-----cCCch--HHHHHHHHHhcCCCceEEEEeC
Confidence 99886 33333 4789999999999999998654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=1.2e-12 Score=112.49 Aligned_cols=105 Identities=15% Similarity=0.246 Sum_probs=86.5
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCC---------CCCceEEEcCCCC-C
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFD-S 249 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~ 249 (357)
+..++..++ .++..+|||+|||+|.++..|++. .|+.+++.+|. +++++.|++ ..++.++.+|+.+ +
T Consensus 85 ~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 85 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 445677777 888999999999999999999987 68899999998 888887764 2578999999987 6
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 250 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 250 ~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
++++ |.|++ |.+++ ..++.+++++|||||++++..+..
T Consensus 164 ~~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEeCcc
Confidence 7665 99886 45444 488999999999999999977543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=1.4e-12 Score=112.66 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=97.1
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~ 252 (357)
+..++..++ ..+..+|||+|||+|.++..+++.. |+.+++.+|. +++++.|++. .++.+...|+...++.
T Consensus 92 ~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 92 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 445677777 8889999999999999999999875 7889999998 8888887652 4678888887665554
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT 330 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 330 (357)
. |.|+ ++.+++ .++|+++.++|||||++++..+..+ ..++..
T Consensus 171 ~~~D~V~-----~d~p~p--~~~l~~~~~~LKpGG~lv~~~P~~~-----------------------------Qv~~~~ 214 (266)
T d1o54a_ 171 KDVDALF-----LDVPDP--WNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 214 (266)
T ss_dssp CSEEEEE-----ECCSCG--GGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred cceeeeE-----ecCCCH--HHHHHHHHhhcCCCCEEEEEeCccc-----------------------------HHHHHH
Confidence 3 7665 456443 5889999999999999998654321 123455
Q ss_pred HHHHHcCCceeEEeec
Q 018366 331 ELAIAAGFKHINFASC 346 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~ 346 (357)
+.+++.||..+++...
T Consensus 215 ~~l~~~gF~~i~~~E~ 230 (266)
T d1o54a_ 215 KKLQELPFIRIEVWES 230 (266)
T ss_dssp HHHHHSSEEEEEEECC
T ss_pred HHHHHCCceeEEEEEE
Confidence 6678899987776653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=1.5e-12 Score=114.81 Aligned_cols=102 Identities=21% Similarity=0.251 Sum_probs=76.1
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----------CCceEEEcCCCC---CCC
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFD---SVP 251 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~p 251 (357)
.+.+. ..+..+|||+|||+|..+..|++. +.+++++|+ +.|++.|++. .+..+...|+.. ..|
T Consensus 49 ~~~l~-~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T d1xvaa_ 49 LGLLR-QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP 125 (292)
T ss_dssp HHHHH-HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC
T ss_pred HHHhh-hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC
Confidence 33344 345679999999999999999987 468999999 8898887642 134455666653 222
Q ss_pred --CC-CEEEe-ccccccCCh-----hHHHHHHHHHHHhCCCCCEEEEE
Q 018366 252 --EG-DAILM-KWILHCWDD-----DHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 252 --~~-D~i~~-~~~lh~~~~-----~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
.. |+|++ .++++|+++ ++...+|++++++|||||+|++-
T Consensus 126 ~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 126 AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 33 87775 568888764 46788999999999999998884
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.30 E-value=1.1e-12 Score=107.63 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=80.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVP--E 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p--~ 252 (357)
.++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.++++ ++++++.+|+.+ ..+ .
T Consensus 24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 4566666 77889999999999999999988754 7888898 8888888752 589999999877 333 2
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.|+|++....+++ .++++.+.+.|||||++++...
T Consensus 101 ~D~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 101 IDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCEEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEee
Confidence 3999998766554 5789999999999999988553
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=1e-11 Score=104.55 Aligned_cols=141 Identities=12% Similarity=0.062 Sum_probs=97.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCCC--CC--CC--CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFDS--VP--EG--DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~--~p--~~--D~i~~~ 259 (357)
++++.+|||+|||+|..+..+++.. |+-+++++|+ +.+++.+++ .+++..+..|...+ .+ .. |+|++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 6788999999999999999999975 7889999998 777766543 46678888887652 22 12 55554
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
.+++. ++...+++++++.|||||+++++......+.... ......+..++ .+.||+
T Consensus 150 -d~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~--------------------~~~v~~~v~~l-~~~gf~ 205 (227)
T d1g8aa_ 150 -DVAQP--TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKE--------------------PEQVFREVERE-LSEYFE 205 (227)
T ss_dssp -CCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSC--------------------HHHHHHHHHHH-HHTTSE
T ss_pred -Ecccc--chHHHHHHHHHHhcccCCeEEEEEECCccCCCCC--------------------HHHHHHHHHHH-HHcCCE
Confidence 34444 5667899999999999999998765432211110 00012234444 457999
Q ss_pred eeEEeecCC---ceeEEEEeC
Q 018366 340 HINFASCVC---NLYIMEFFK 357 (357)
Q Consensus 340 ~~~~~~~~~---~~~vie~~~ 357 (357)
+++.....+ ++.++.++|
T Consensus 206 iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred EEEEEcCCCCCCceEEEEEEe
Confidence 998877643 467777765
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=9.5e-12 Score=107.38 Aligned_cols=140 Identities=15% Similarity=0.188 Sum_probs=102.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG--D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~--D 254 (357)
..+.... +.+.+|||+|||+|..+..++..+|+.+++++|+ +..++.|++. .+|+++.+|++++++.. |
T Consensus 100 ~~l~~~~--~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fD 177 (274)
T d2b3ta1 100 QALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFA 177 (274)
T ss_dssp HHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEE
T ss_pred hHhhhhc--ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCcee
Confidence 3444443 4557899999999999999999999999999999 7888877652 57999999999976653 9
Q ss_pred EEEecccc-------------ccCCh----------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhh
Q 018366 255 AILMKWIL-------------HCWDD----------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLD 311 (357)
Q Consensus 255 ~i~~~~~l-------------h~~~~----------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~ 311 (357)
+|+++--. .+-|. ....++++.+.+.|+|||.+++ |..
T Consensus 178 lIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig------------------ 238 (274)
T d2b3ta1 178 MIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHG------------------ 238 (274)
T ss_dssp EEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECC------------------
T ss_pred EEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EEC------------------
Confidence 99986321 11110 2345788888999999999888 211
Q ss_pred hhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEE
Q 018366 312 VLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEF 355 (357)
Q Consensus 312 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~ 355 (357)
. ...+.+.+++++.||..+++.... +...++.+
T Consensus 239 ---------~--~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~ 272 (274)
T d2b3ta1 239 ---------W--QQGEAVRQAFILAGYHDVETCRDYGDNERVTLG 272 (274)
T ss_dssp ---------S--SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEE
T ss_pred ---------c--hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEE
Confidence 0 124677899999999988876655 44445554
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.27 E-value=1.2e-11 Score=102.51 Aligned_cols=96 Identities=20% Similarity=0.306 Sum_probs=74.9
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC---CCCCC--CEEEeccccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD---SVPEG--DAILMKWILH 263 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~p~~--D~i~~~~~lh 263 (357)
..|||||||+|.++..+++.+|+..++++|+ +.++..+.+ ..++.++.+|+.+ .++.. |.|++...-.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP 112 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP 112 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence 4799999999999999999999999999998 666665533 3689999999876 34544 8887665443
Q ss_pred cCChhH------HHHHHHHHHHhCCCCCEEEEEe
Q 018366 264 CWDDDH------CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 264 ~~~~~~------~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+....+ ...+|+.+.+.|||||.|.+.+
T Consensus 113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 332221 1589999999999999998854
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=3.8e-12 Score=106.55 Aligned_cols=99 Identities=19% Similarity=0.317 Sum_probs=80.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCCCC-CC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDSVP-EG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~p-~~ 253 (357)
..+++.+. +++..+|||||||+|..+..+++.. ++.+++.+|. +.+++.+++ ..++.++.+|..+..+ .+
T Consensus 65 a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 35667676 7888999999999999999999875 6778999998 888887765 2578899999877433 33
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
|+|++..++++.++ .+.+.|||||+|++.
T Consensus 144 ~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp CEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred chhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 99999999998864 356779999999884
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=1e-11 Score=112.71 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=85.0
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---------------CCceE-EEc
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------AGVEH-VGG 244 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~-~~~ 244 (357)
+..+++.+. +++..+|||||||+|..+..++..++..+++|+|+ +.+++.|++. ..+.+ ..+
T Consensus 205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 346788787 78889999999999999999999998778999999 8888777541 22333 345
Q ss_pred CCCC-C-----CCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 245 NMFD-S-----VPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 245 D~~~-~-----~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
++.+ + ++..|+|++.+.+ +. ++....|+++.+.|||||+|++.+...+.
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~-f~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~~ 338 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLRSL 338 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred chhhccccccccccceEEEEeccc-Cc--hHHHHHHHHHHHhcCCCcEEEEecccCCC
Confidence 5554 1 2233888876644 34 67789999999999999999998876654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=3.6e-11 Score=101.12 Aligned_cols=99 Identities=20% Similarity=0.195 Sum_probs=77.7
Q ss_pred HHHhhcc-cCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcCCCCC
Q 018366 184 RILEHYE-GFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFDS 249 (357)
Q Consensus 184 ~i~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~~ 249 (357)
.+++.+. ..++..+|||||||+|..+..+++. .|..+++++|+ +++++.+++. .++.++.+|....
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 4555552 2567889999999999999888875 46778999998 8888777541 5688999998874
Q ss_pred CC-CC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 250 VP-EG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 250 ~p-~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
.+ .+ |+|++..++++.++ .+.+.|||||+|++.
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILP 180 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred cchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEE
Confidence 33 33 99999999998753 356789999999984
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1e-10 Score=103.30 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=86.0
Q ss_pred HHHHHhhcchh----hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCC--------
Q 018366 170 YHKAMFNHSTI----AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-------- 235 (357)
Q Consensus 170 ~~~~~~~~~~~----~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------- 235 (357)
|-..|...+.. .+..|+..++ ..++.+|||+|||+|.++..|++. .|+.+++.+|+ +++++.|++
T Consensus 71 ~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~ 149 (324)
T d2b25a1 71 YVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149 (324)
T ss_dssp HHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhh
Confidence 44455555443 3456777777 888999999999999999999986 58889999998 777776653
Q ss_pred ---------CCCceEEEcCCCCC---CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 236 ---------YAGVEHVGGNMFDS---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 236 ---------~~~v~~~~~D~~~~---~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
..++.+..+|+.+. ++.. |.|++ +.+++ ..+|.+++++|||||+|++.-+.
T Consensus 150 ~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P--~~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 150 WKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNP--HVTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp HTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSST--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred hhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCH--HHHHHHHHHhccCCCEEEEEeCC
Confidence 14789999998762 2333 88876 34333 36799999999999999986543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=1.3e-10 Score=103.61 Aligned_cols=95 Identities=16% Similarity=0.234 Sum_probs=74.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCC-CCCCC--CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFD-SVPEG--DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh 263 (357)
+..+|||||||+|.++..+++... .+++++|..+++..+++ ..++.++.+|+.+ ++|.. |+|++..+.+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 457999999999999988887654 37889998655555443 2579999999988 66654 9999987777
Q ss_pred cCCh-hHHHHHHHHHHHhCCCCCEEEE
Q 018366 264 CWDD-DHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 264 ~~~~-~~~~~~L~~~~~~LkpgG~l~i 289 (357)
+... .....++..+.+.|||||+++-
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccchhHHHHHHHHHhccCCCeEEEe
Confidence 6544 3466788888999999998863
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=1.4e-10 Score=102.99 Aligned_cols=95 Identities=18% Similarity=0.282 Sum_probs=73.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCC-CCCCC--CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFD-SVPEG--DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh 263 (357)
+..+|||||||+|.++..+++..+. +++++|..++...+++ .++|.++.+|+.+ +.+.. |+|++..+.|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~-~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS-EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCC-EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 4578999999999999988887543 7889997433333222 3679999999988 66643 9999887777
Q ss_pred cCChh-HHHHHHHHHHHhCCCCCEEEE
Q 018366 264 CWDDD-HCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 264 ~~~~~-~~~~~L~~~~~~LkpgG~l~i 289 (357)
+...+ ....++..+.+.|||||+++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 65444 567899999999999999874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.99 E-value=2.1e-10 Score=95.99 Aligned_cols=96 Identities=16% Similarity=0.273 Sum_probs=75.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCCCCCC-C--CE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFDSVPE-G--DA 255 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~p~-~--D~ 255 (357)
.+++.++ +++..+|||||||+|..+..+++.. .+++.+|. +..++.+++ ..++.++.+|.....+. + |+
T Consensus 61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence 4667677 7888999999999999999888875 36777776 777766643 47899999998775443 3 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
|++...+++.++ .+.+.|||||+|++.
T Consensus 138 Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 138 VVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred HHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 999999888753 345789999999883
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=5.9e-10 Score=98.60 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=75.6
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCC-CCCC-C-C
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFD-SVPE-G-D 254 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~p~-~-D 254 (357)
+.+... ..+..+|||||||+|.++..+++..+ .+++++|..+....+++ .+++.++.+|+.+ +.+. . |
T Consensus 27 i~~~~~-~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D 104 (311)
T d2fyta1 27 IYQNPH-IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD 104 (311)
T ss_dssp HHHCGG-GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred HHhccc-cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccce
Confidence 344333 34567999999999999999998765 37899998332222221 3679999999988 5654 3 9
Q ss_pred EEEeccccccCChh-HHHHHHHHHHHhCCCCCEEEE
Q 018366 255 AILMKWILHCWDDD-HCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 255 ~i~~~~~lh~~~~~-~~~~~L~~~~~~LkpgG~l~i 289 (357)
+|++..+.|+...+ ....++....+.|||||+++-
T Consensus 105 ~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 105 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99998888876555 355777777889999999874
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.97 E-value=4.3e-10 Score=92.25 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=72.3
Q ss_pred CCCceEEEEcCCcchHH----HHHHhhC----CCCeEEEeec-hHHHHhCCCC---------------------------
Q 018366 193 QNVERLVDVGGGFGVTL----SMITSKY----PQIKAVNFDL-PHVVQDAPSY--------------------------- 236 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~----~~l~~~~----p~~~~~~~D~-~~~~~~a~~~--------------------------- 236 (357)
.+..+|+++|||+|.-. +.+.+.. .++++++.|+ +.+++.|++-
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 35679999999999743 3333321 3456888888 7777766420
Q ss_pred ----------CCceEEEcCCCCC--CCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 237 ----------AGVEHVGGNMFDS--VPE-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 237 ----------~~v~~~~~D~~~~--~p~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
..+.+...+...+ .+. . |+|+|.++|++++++...+++++++++|+|||+|++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1245666666652 222 3 9999999999999999999999999999999998884
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.89 E-value=8.4e-10 Score=90.01 Aligned_cols=113 Identities=16% Similarity=0.217 Sum_probs=87.1
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCC------
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFD------ 248 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~------ 248 (357)
...++++.+. ..+...+||++||+|..+..+++.+|+.+++++|. +++++.+++ ..++.++.++|.+
T Consensus 11 ll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 11 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence 3567888777 67778999999999999999999999999999999 888888765 2589999998865
Q ss_pred CCCC-C-CEEEecccccc--C-----ChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 249 SVPE-G-DAILMKWILHC--W-----DDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 249 ~~p~-~-D~i~~~~~lh~--~-----~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
..+. . |.|++-.-+.. + .-....+.|..+.++|+|||+++++++..
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 2222 2 87776433311 0 11345688999999999999999988654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.86 E-value=1.4e-09 Score=90.34 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=76.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCCCCC-C-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDSVPE-G- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~p~-~- 253 (357)
..+++.+. +++..+|||||||+|..+..+++... .+++.+|. +++++.+++ ..++.++.+|..+..+. +
T Consensus 68 a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 68 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhhc-cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 35667677 78889999999999999998887653 45666776 777777664 27899999999885443 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
|.|++...+++.|+. +.+.|+|||++++.
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence 999999999887542 45679999999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.84 E-value=2.9e-09 Score=88.95 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=75.5
Q ss_pred HHHhhcc-cCCCCceEEEEcCCcchHHHHHHhhC------CCCeEEEeec-hHHHHhCCCC-----------CCceEEEc
Q 018366 184 RILEHYE-GFQNVERLVDVGGGFGVTLSMITSKY------PQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGG 244 (357)
Q Consensus 184 ~i~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~------p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~ 244 (357)
.++..+. .+++..+|||||||+|+.+..+++.. +..+++.+|. ++.++.+++. .++.++.+
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 4566552 26678899999999999988887753 4557888887 7777766542 47999999
Q ss_pred CCCCCCC-CC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 245 NMFDSVP-EG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 245 D~~~~~p-~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
|..+..+ .+ |.|++...+++.++ .+.+.|||||++++.
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence 9887443 33 99999999988753 356789999999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.73 E-value=8.8e-09 Score=88.09 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=87.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC--CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG--DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~--D~i~~~~~l 262 (357)
+++.+|||+|||+|.++..+++.. ..+++.+|+ |..++.+++ .++|+++.+|..+-.+.. |.|++...
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p- 183 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV- 183 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC-
Confidence 467899999999999999999874 568999998 777777664 257999999998844443 98887532
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHI 341 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 341 (357)
.....+|..+.+.|+|||.|.+.+....+. ......+.+.++..+.||++.
T Consensus 184 -----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~-----------------------~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 184 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred -----CchHHHHHHHHhhcCCCCEEEEEecccccc-----------------------chhhHHHHHHHHHHHcCCceE
Confidence 123467888889999999998766543220 011235667788889999864
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.3e-07 Score=78.65 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=56.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC----CC---CCC--CE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD----SV---PEG--DA 255 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~----~~---p~~--D~ 255 (357)
++..++||+|||+|..+..++.+.|+++++++|+ +.+++.|++. .++.++..+... .. ... |+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 3457999999999999999999999999999999 8888887752 567877654433 11 222 99
Q ss_pred EEeccccccC
Q 018366 256 ILMKWILHCW 265 (357)
Q Consensus 256 i~~~~~lh~~ 265 (357)
|+|+=-.+.-
T Consensus 140 ivsNPPY~~~ 149 (250)
T d2h00a1 140 CMCNPPFFAN 149 (250)
T ss_dssp EEECCCCC--
T ss_pred EEecCccccc
Confidence 9998887754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.55 E-value=5.6e-08 Score=83.13 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=52.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC---C-CEEEec
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE---G-DAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~---~-D~i~~~ 259 (357)
+..+|+|+|||+|..+..+++ +|+.+++++|+ +..++.+++. .++.+..+|++++.+. . |+|+++
T Consensus 110 ~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred cccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 456899999999999999875 69999999999 8888877652 4678889999885442 2 999876
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.41 E-value=7.5e-08 Score=75.37 Aligned_cols=93 Identities=11% Similarity=0.006 Sum_probs=67.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC--CCCC-C-CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD--SVPE-G-DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~~p~-~-D~i~~~~~ 261 (357)
+..+|||+|||+|.++.+.+.+... +++.+|. +.+++.+++ .++++++.+|..+ +.+. . |+|++---
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 4679999999999999998887664 8888888 777765543 2568999999876 2222 2 99987432
Q ss_pred cccCChhHHHHHHHHHHH--hCCCCCEEEEE
Q 018366 262 LHCWDDDHCLRILKNCYK--AIPDNGKVIVM 290 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~--~LkpgG~l~i~ 290 (357)
. ........|..+.. .|+|||.+++-
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred h---ccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 1 12445567777654 58999988764
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.37 E-value=7.8e-08 Score=84.17 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=74.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCC---CCCCC-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFD---SVPEG-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~---~~p~~-D~i 256 (357)
+.+++||.||+|.|..+..+++..|..+++.+|+ |.+++.+++ .+|++++.+|..+ ..+.. |+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 4578999999999999999999888888888888 888876653 3689999999887 22333 999
Q ss_pred Eeccc--cccC-Chh--HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 257 LMKWI--LHCW-DDD--HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 257 ~~~~~--lh~~-~~~--~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
++-.. ...- +.. -..++++.+++.|+|||.+++.-
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 85321 1110 111 12588999999999999988754
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.7e-07 Score=77.71 Aligned_cols=97 Identities=11% Similarity=0.229 Sum_probs=74.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCC--------CCC-C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSV--------PEG-D 254 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~--------p~~-D 254 (357)
.++++|||||||+|..+..+++..| +.+++.+|. ++..+.+++ .++++++.+|..+.. +.. |
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 4578999999999999999999886 678888887 666666554 367999999976511 222 8
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+|+.-. ..+.....+..+.+.|+|||.+++-+..+
T Consensus 138 ~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 138 VAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp EEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 888743 22455788899999999999998855544
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.31 E-value=1.4e-07 Score=78.11 Aligned_cols=96 Identities=10% Similarity=0.170 Sum_probs=68.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCC-------CC--CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVP-------EG--DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p-------~~--D~ 255 (357)
++.+|||||||+|..+..+++..+ +.+++.+|. +...+.++. .++|+++.+|..+.++ .. |+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 467999999999999999999875 678999998 777777654 2579999999765222 12 88
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|++-+ +.........+.+..+.|||||.|++ |.+
T Consensus 136 ifiD~---~~~~~~~~~~l~~~~~lLkpGGvIv~-Ddv 169 (214)
T d2cl5a1 136 VFLDH---WKDRYLPDTLLLEKCGLLRKGTVLLA-DNV 169 (214)
T ss_dssp EEECS---CGGGHHHHHHHHHHTTCEEEEEEEEE-SCC
T ss_pred eeecc---cccccccHHHHHHHhCccCCCcEEEE-eCc
Confidence 87652 22112223456777788999997655 443
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.27 E-value=2.1e-07 Score=78.37 Aligned_cols=90 Identities=10% Similarity=0.248 Sum_probs=67.0
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----CCceEEEcCCCC-CCCCC-C
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~p~~-D 254 (357)
+..+++.+. .++..+|||||||+|.++..|++... +++++|+ +.+++.+++. ++++++.+|+++ +++.. +
T Consensus 18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence 457888776 67788999999999999999999854 5666666 6677766643 579999999998 77754 5
Q ss_pred EEEeccccccCChhHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRIL 274 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L 274 (357)
..+.++.=++++.+-...++
T Consensus 95 ~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 95 YKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHH
T ss_pred eeEeeeeehhhhHHHHHHHh
Confidence 55666766777655444443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.22 E-value=7.8e-07 Score=72.13 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=51.2
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCCCCCCC-CEEEeccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFDSVPEG-DAILMKWI 261 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~p~~-D~i~~~~~ 261 (357)
+.+|||+|||+|.++..++...+. +++++|+ +.+++.+++. .+++++.+|+.+ ++.. |+|+++=-
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~-l~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPP 116 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccccccEEEEehhh-cCCcceEEEeCcc
Confidence 579999999999999887776554 7888888 7888877763 679999999865 3333 99998643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.22 E-value=3e-07 Score=81.11 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=72.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---C---CCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---V---PEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~---p~~-D~i~ 257 (357)
++..+|||+|||+|.++..++.... .+++.+|+ +.+++.+++. ++++++.+|+++. . ... |+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 4578999999999999999988754 37999998 7788877652 4688999998762 1 122 9999
Q ss_pred eccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 258 MKWILHCWDD-------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 258 ~~~~lh~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.---..-.. ....++++.+.++|+|||+|+.+..
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7332211111 1234688888999999999998764
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.21 E-value=3e-07 Score=79.39 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=73.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~~-D~i~ 257 (357)
+.+.+||-||+|.|..+.++++..|..+++.+|+ |.+++.+++ .+|++++.+|..+ ..+.. |+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 3578999999999999999999877778888888 888887764 3789999999876 22333 9998
Q ss_pred eccccccCChh---HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHCWDDD---HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~~~~~---~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+-..-...... -..++++.+++.|+|||.+++.-
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 63221111101 12589999999999999998753
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.20 E-value=1.9e-06 Score=72.01 Aligned_cols=84 Identities=10% Similarity=0.257 Sum_probs=60.4
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCC----CCCCceEEEcCCCC-CCCCC-C
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAP----SYAGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~~~~v~~~~~D~~~-~~p~~-D 254 (357)
.+..+++.++ .++..+|||||||+|.++..|++....+.++..| +.+++..+ ..++++++.+|+++ +++.. .
T Consensus 9 i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D-~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~ 86 (235)
T d1qama_ 9 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEID-HKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 86 (235)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSC-HHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcCceEEEeec-cchHHHHHHHhhcccchhhhhhhhhhcccccccc
Confidence 3567777776 6788999999999999999999986544444444 55555443 35789999999998 66654 5
Q ss_pred EEEeccccccCC
Q 018366 255 AILMKWILHCWD 266 (357)
Q Consensus 255 ~i~~~~~lh~~~ 266 (357)
..+..+.=++.+
T Consensus 87 ~~vv~NLPYnIs 98 (235)
T d1qama_ 87 YKIFGNIPYNIS 98 (235)
T ss_dssp CEEEEECCGGGH
T ss_pred ceeeeeehhhhh
Confidence 555566555543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.18 E-value=5.8e-07 Score=76.97 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=73.6
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~~-D~i~ 257 (357)
.++.+||-||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|... ..+.. |+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 3568999999999999999998877778888888 888877654 3789999999876 22233 9998
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHCWDDD--HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~~~~~--~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.-..-..-+.. -..++++.+++.|+|||.++..-
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 54321111111 13588999999999999988753
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.17 E-value=5.6e-07 Score=77.28 Aligned_cols=97 Identities=15% Similarity=0.216 Sum_probs=70.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------------CCCceEEEcCCCCC--CCCC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------------YAGVEHVGGNMFDS--VPEG 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~D~~~~--~p~~ 253 (357)
.++.+||.||+|.|..+.++++ +|..+++.+|+ |.+++.+++ .+|++++.+|...- ....
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 4678999999999999999987 45567888888 888887652 36899999998752 1223
Q ss_pred -CEEEeccccccCChhH---HHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 -DAILMKWILHCWDDDH---CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~---~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++-. .+...... ..++++.+++.|+|||.+++.-
T Consensus 150 yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 150 FDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 9998633 22222111 2588999999999999988753
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6.2e-07 Score=77.16 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=73.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~~-D~i~ 257 (357)
+.+.+||-||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|... ..++. |+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 4668999999999999999998777778888888 888888764 3799999999776 23333 9998
Q ss_pred eccccccCChhH---HHHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHCWDDDH---CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~~~~~~---~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+-. .+...... ..++++.+++.|+|||.+++.-
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 642 22221111 2378999999999999998854
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.12 E-value=8.4e-07 Score=73.73 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=73.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCC---------CCC-
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSV---------PEG- 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~---------p~~- 253 (357)
.++.+|||||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+.+ ...
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 3578999999999999999999887 678888887 766666654 257999999986521 122
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+|++-. ........++.+.+.|+|||.+++-+..
T Consensus 138 D~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 138 DFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp SEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred eEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 9998732 2245678899999999999998885544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.11 E-value=5.5e-07 Score=79.07 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=70.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC---C---CCC-CEEEec
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS---V---PEG-DAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~---p~~-D~i~~~ 259 (357)
...+|||++||+|.++.+++.. ..+++.+|. +.+++.+++. .+++++.+|.++. . ... |+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 4679999999999999998864 347888998 7888877652 5789999998761 1 122 999874
Q ss_pred cccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 260 WILHCWDD-------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 260 ~~lh~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
---...+. ....++++.+.++|||||.|+.+..
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 32111111 2234788899999999999988654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.10 E-value=1.1e-06 Score=75.72 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=74.6
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~-~-D~i 256 (357)
+++.+||-||+|.|..++++++..|-.+++.+|+ +.+++.+++ .+|++++.+|..+ ..++ . |+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4678999999999999999999777667888888 888887765 3789999999776 3333 3 999
Q ss_pred EeccccccCChh---HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 257 LMKWILHCWDDD---HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 257 ~~~~~lh~~~~~---~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+.-.. ...... -..++++.+++.|+|||.+++.-
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 86322 211111 13588999999999999999854
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.05 E-value=9e-07 Score=76.73 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=70.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~~-D~i~ 257 (357)
+.+.+||-||+|.|..++++++..|-.+++.+|+ +.+++.+++ .+|++++.+|..+ ..+.. |+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4578999999999999999998776668888888 888887654 2789999999876 22233 9998
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHCWDDD--HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~~~~~--~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+-..-..-+.. -..++++.+++.|+|||.++..-
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 63321111111 13578999999999999999853
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.01 E-value=7.1e-06 Score=66.84 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=60.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCCCCEEEeccccccCCh
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPEGDAILMKWILHCWDD 267 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~ 267 (357)
.+.+|||+|||+|.++..++...+ .+++++|+ +.+++.+++. .++++..+|..+.....|+|++.--......
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~~ 124 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRK 124 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSST
T ss_pred CCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccccccc
Confidence 346999999999999998887644 47888888 7777766542 4578888887653323499998655433322
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEE
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
......+.+..+ +++.+...
T Consensus 125 ~~d~~~l~~~~~---~~~~v~~i 144 (201)
T d1wy7a1 125 HADRPFLLKAFE---ISDVVYSI 144 (201)
T ss_dssp TTTHHHHHHHHH---HCSEEEEE
T ss_pred cccHHHHHHHHh---hcccchhc
Confidence 222344544433 34444443
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.99 E-value=4.3e-06 Score=72.29 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=70.6
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCCC------CC-CCE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDSV------PE-GDA 255 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~------p~-~D~ 255 (357)
..++.+|||+.||+|.++..++.. +.+++.+|. +.+++.++++ .+++++.+|+++.+ .. .|+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 456779999999999999998876 457999998 7788777652 36899999987622 12 299
Q ss_pred EEec---cccc----cCC-hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 256 ILMK---WILH----CWD-DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 256 i~~~---~~lh----~~~-~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|++- ..-. .+. ..+...+++.+.++|+|||.++++..
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 9872 1100 111 13345677888899999998777654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.98 E-value=3.1e-06 Score=73.98 Aligned_cols=98 Identities=11% Similarity=0.097 Sum_probs=69.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCCC------CCC-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDSV------PEG-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~------p~~-D~i 256 (357)
.++.+|||+.||+|.++...+.... .+++.+|. +..++.+++. .+++++.+|+++.+ ... |+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 4567999999999999988776533 36888888 6666665531 46899999987621 122 999
Q ss_pred Eec--------cccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 257 LMK--------WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 257 ~~~--------~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
++- ..++.. ..+..++++.+.+.|+|||.|+++..
T Consensus 222 i~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EECCCCC-----CCCCH-HHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 873 111111 12345799999999999999998653
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.91 E-value=1.9e-05 Score=65.00 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=71.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCC-CC-CEEEe
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVP-EG-DAILM 258 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p-~~-D~i~~ 258 (357)
+.+++.+. ..+..+|+|.|||+|.++..+.+..+. ..++++|+ +.....+ .+..+..+|.+...+ .. |+++.
T Consensus 9 ~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~ii~ 84 (223)
T d2ih2a1 9 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 84 (223)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhccccccccceecc
Confidence 34555555 556789999999999999999887665 45788887 4443332 235677788777333 33 88887
Q ss_pred ccccccCC---h------------------------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 259 KWILHCWD---D------------------------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~~lh~~~---~------------------------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.-...... . .-...++.++.+.|+|||+++++-+
T Consensus 85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 65432210 0 0123667888999999999988764
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=1.4e-05 Score=65.07 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=68.9
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hH---HHHhCC---CCCCceEEEcCCCCCCCC-C-CEEEeccccccC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH---VVQDAP---SYAGVEHVGGNMFDSVPE-G-DAILMKWILHCW 265 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~---~~~~v~~~~~D~~~~~p~-~-D~i~~~~~lh~~ 265 (357)
..+|+|+|+|.|..+.-++-.+|+.+++.+|. .. .++.+. ...+++++...+.+..+. . |+|+++.+-
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~--- 142 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA--- 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS---
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc---
Confidence 46899999999999999999999999999996 21 222221 136799999888773333 3 998887652
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
....+++-+...++|+|++++.-
T Consensus 143 ---~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 143 ---SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEEC
Confidence 34578888888999999988844
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.88 E-value=1.3e-05 Score=63.85 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=79.0
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC--CCCceEEEcCCCC-C-----CC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFD-S-----VP 251 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~D~~~-~-----~p 251 (357)
..+++++.+. ..+...++|..+|.|..+..+++. +.+++++|. |.+++.++. .+++.++.+++.+ . .+
T Consensus 6 ll~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~ 82 (182)
T d1wg8a2 6 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 82 (182)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence 3567788776 667789999999999999999997 458899998 888777654 4689999988765 1 12
Q ss_pred -CC-CEEEeccccc-----cCCh--hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 252 -EG-DAILMKWILH-----CWDD--DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 252 -~~-D~i~~~~~lh-----~~~~--~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.. |.|++-.-+. +-.. ......|....+.|+|||+++++.+
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 22 7776533221 1100 1234578899999999999999775
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=4.6e-06 Score=66.95 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=66.3
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC--CCC-CC-CEEEeccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD--SVP-EG-DAILMKWILH 263 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~--~~p-~~-D~i~~~~~lh 263 (357)
..+|||++||+|.++.+.+.+... +++.+|. +.+++.+++ ..+++++..|+++ ... .. |+|++-=-..
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 469999999999999999888765 7888887 666665554 2568888899876 222 23 9999854322
Q ss_pred cCChhHHHHHHHHHHH--hCCCCCEEEEE
Q 018366 264 CWDDDHCLRILKNCYK--AIPDNGKVIVM 290 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~--~LkpgG~l~i~ 290 (357)
.....+++..+.+ .|+|+|.+++-
T Consensus 123 ---~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 123 ---RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ---cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 2344566777765 58998877774
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.84 E-value=1e-05 Score=71.16 Aligned_cols=101 Identities=10% Similarity=0.129 Sum_probs=71.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHhh-----CCCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCCCCCC--CCEEEe
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSK-----YPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFDSVPE--GDAILM 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~-----~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~p~--~D~i~~ 258 (357)
..+..+|+|.+||+|.++..+.+. .++...+++|+ +.++..|+. .....+..+|.....+. .|+|++
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 194 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence 455679999999999999988754 24456888888 667766653 24577888887774443 399998
Q ss_pred ccccccCChhH----------------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 259 KWILHCWDDDH----------------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~~lh~~~~~~----------------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+--+......+ -..++.++.+.|+|||+++++-+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 75542211111 12469999999999999888665
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.83 E-value=6.9e-05 Score=61.72 Aligned_cols=106 Identities=18% Similarity=0.093 Sum_probs=66.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHH---HHhCCC-C--CCceEEEcCCCCCCC-C-C
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV---VQDAPS-Y--AGVEHVGGNMFDSVP-E-G 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~---~~~a~~-~--~~v~~~~~D~~~~~p-~-~ 253 (357)
+.++.+.+- +.+..+|+|+|||.|.++..++...+...+.++++... .....+ . +-+++...+.....+ . .
T Consensus 55 l~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~ 133 (257)
T d2p41a1 55 LRWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC 133 (257)
T ss_dssp HHHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence 445666654 67778999999999999999998866556666665111 111111 1 224555554333333 3 3
Q ss_pred CEEEeccccccCCh-----hHHHHHHHHHHHhCCCCCEEEE
Q 018366 254 DAILMKWILHCWDD-----DHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 254 D~i~~~~~lh~~~~-----~~~~~~L~~~~~~LkpgG~l~i 289 (357)
|+|+|-..-+ -++ +...++|.-+.+.|+|||-+++
T Consensus 134 D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~Fvv 173 (257)
T d2p41a1 134 DTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCV 173 (257)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence 9999865432 221 2234778888899999998777
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.81 E-value=5.6e-05 Score=62.55 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=66.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHh----hCCCCeEEEeec-hHHHHhCC-CCCCceEEEcCCCCC-----CCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITS----KYPQIKAVNFDL-PHVVQDAP-SYAGVEHVGGNMFDS-----VPE 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~----~~p~~~~~~~D~-~~~~~~a~-~~~~v~~~~~D~~~~-----~p~ 252 (357)
+++..+. +.+|||||++.|.-+..++. ..++.+++++|+ +....... ...+++++.+|..++ +..
T Consensus 74 eli~~~K----Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~ 149 (232)
T d2bm8a1 74 DMLWELR----PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLRE 149 (232)
T ss_dssp HHHHHHC----CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSS
T ss_pred HHHHHhC----CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHh
Confidence 4666554 67999999999976655443 346788999997 43332222 247899999987652 112
Q ss_pred -C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 -G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 -~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. |+|+.= .-|.. +....-+ .....|+|||+++|-|.
T Consensus 150 ~~~dlIfID-~~H~~--~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 150 MAHPLIFID-NAHAN--TFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SCSSEEEEE-SSCSS--HHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred cCCCEEEEc-CCcch--HHHHHHH-HHhcccCcCCEEEEEcC
Confidence 2 777664 34664 4434444 36689999999999665
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.80 E-value=2.4e-06 Score=67.82 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=57.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCC-CC-CEEEec
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVP-EG-DAILMK 259 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p-~~-D~i~~~ 259 (357)
....+|||+|||+|.++.+.+.+. .+++.+|. +.+++.+++. .++.....|.+. ..+ .. |+|++.
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 456799999999999999888874 46778888 7888777642 233333333221 111 22 999874
Q ss_pred cccccCChhHHHHHHHHH--HHhCCCCCEEEEEe
Q 018366 260 WILHCWDDDHCLRILKNC--YKAIPDNGKVIVMN 291 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~--~~~LkpgG~l~i~e 291 (357)
=-.+ .... +.+..+ ...|+|||.+++..
T Consensus 118 PPY~-~~~~---~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 118 PPYA-MDLA---ALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CCTT-SCTT---HHHHHHHHHTCEEEEEEEEEEE
T ss_pred cccc-cCHH---HHHHHHHHcCCcCCCeEEEEEe
Confidence 3222 1212 233333 24689999877643
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=4.9e-05 Score=60.42 Aligned_cols=108 Identities=16% Similarity=0.239 Sum_probs=75.4
Q ss_pred hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhCCCCCCceEEEcCCCCC-C-------
Q 018366 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS-V------- 250 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-~------- 250 (357)
..+.+|.+.++-+++..+|||+||+.|.++..+.+.. +...++++|+.++ ...+++.++.+|+.+. .
T Consensus 8 fKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T d1ej0a_ 8 FKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhh
Confidence 3455777777756788899999999999999988764 4567899997442 2346788999998761 1
Q ss_pred -CC-C-CEEEeccccccCChhH---------HHHHHHHHHHhCCCCCEEEEEe
Q 018366 251 -PE-G-DAILMKWILHCWDDDH---------CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 251 -p~-~-D~i~~~~~lh~~~~~~---------~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.. . |+|++-.........+ +...|.-+.+.|+|||.+++--
T Consensus 84 ~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 12 2 8888765543322111 2355666778899999999844
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.67 E-value=1.8e-05 Score=63.20 Aligned_cols=94 Identities=10% Similarity=0.049 Sum_probs=66.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCC------CCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSV------PEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~------p~~-D~i~~ 258 (357)
...+|||+.||+|.++.+.+.+... +++.+|. +.+++.+++ ..+++++.+|+++.+ ... |+|++
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 5679999999999999999988654 6788887 666666554 247899999987621 122 99987
Q ss_pred ccccccCChhHHHHHHHHHHH--hCCCCCEEEEEee
Q 018366 259 KWILHCWDDDHCLRILKNCYK--AIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~--~LkpgG~l~i~e~ 292 (357)
-=-.+ ......+|..+.+ .|+|+|.+++ |.
T Consensus 120 DPPY~---~~~~~~~l~~i~~~~~L~~~giIi~-E~ 151 (182)
T d2fhpa1 120 DPPYA---KQEIVSQLEKMLERQLLTNEAVIVC-ET 151 (182)
T ss_dssp CCCGG---GCCHHHHHHHHHHTTCEEEEEEEEE-EE
T ss_pred chhhh---hhHHHHHHHHHHHCCCCCCCEEEEE-Ec
Confidence 43321 2345677888765 5899997765 43
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=8.6e-05 Score=63.06 Aligned_cols=93 Identities=14% Similarity=0.233 Sum_probs=63.3
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCC-CCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~p~ 252 (357)
.+..+++... ..+...|||||+|.|.++..|++....+.++..| +..++..++ ..+++++.+|+.+ +.|.
T Consensus 9 i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D-~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~ 86 (278)
T d1zq9a1 9 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD-PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 86 (278)
T ss_dssp HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESC-HHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEc-cchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence 3456777666 6677899999999999999999997766666666 554444332 1579999999998 6665
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHh
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKA 280 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~ 280 (357)
.+.|+.+--. +. ...++.++...
T Consensus 87 ~~~vV~NLPY-~I----ss~il~~~~~~ 109 (278)
T d1zq9a1 87 FDTCVANLPY-QI----SSPFVFKLLLH 109 (278)
T ss_dssp CSEEEEECCG-GG----HHHHHHHHHHC
T ss_pred hhhhhcchHH-HH----HHHHHHHHHhh
Confidence 5666544332 22 34556655543
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=3.3e-05 Score=51.90 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=47.1
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
+.|++.+...+ |.|+.|||+++|+ ++.-+.|+|..|+..|++.+. +++.|.+++..
T Consensus 8 l~IL~~~a~~~~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~~---~~g~y~lG~~l 64 (75)
T d1mkma1 8 FEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK---KDKRYVPGYKL 64 (75)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCCEeecHHH
Confidence 45677777654 8999999999999 999999999999999999964 35789887653
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=2.2e-05 Score=65.97 Aligned_cols=66 Identities=11% Similarity=0.233 Sum_probs=50.7
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC----CCCceEEEcCCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFD 248 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~v~~~~~D~~~ 248 (357)
.+..+++.+. ..+...|||||||.|.++..|++....+.++..| +.+++..++ .++++++.+|+.+
T Consensus 9 ~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~~~~ii~~D~l~ 78 (252)
T d1qyra_ 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELD-RDLAARLQTHPFLGPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCC-HHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred HHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCCceEEEEec-cchhHHHHHHhhhccchhHHhhhhhh
Confidence 3456777776 6678899999999999999999987655555555 666655433 3679999999987
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.41 E-value=5.1e-05 Score=62.89 Aligned_cols=93 Identities=16% Similarity=0.279 Sum_probs=68.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-h---HHHHhCCC---CCCceEEEcCCCC-----CCCCC-CEEEec
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFD-----SVPEG-DAILMK 259 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~~---~~~v~~~~~D~~~-----~~p~~-D~i~~~ 259 (357)
+...+|+|||+|.|..+.-++-.+|+.+++.+|. . ..++.+.. ..++.++...+.+ +.... |+|+++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 3557999999999999999999999999999996 2 12222211 3577777776543 12223 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.+ .....++.-+...+++||++++.-
T Consensus 149 Av------a~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 149 AV------ARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp CC------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hh------hCHHHHHHHHhhhcccCCEEEEEC
Confidence 64 334678999999999999998843
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.28 E-value=0.0068 Score=52.75 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=90.0
Q ss_pred CCceEEEEcCCcchHHH--------HHHhh--------CCCCeEEEeechH-----HHHhCCCC----CC--ceEEEcCC
Q 018366 194 NVERLVDVGGGFGVTLS--------MITSK--------YPQIKAVNFDLPH-----VVQDAPSY----AG--VEHVGGNM 246 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~--------~l~~~--------~p~~~~~~~D~~~-----~~~~a~~~----~~--v~~~~~D~ 246 (357)
+..+|.|+||.+|..+. .+.+. .|...+..-|+|. ........ +. +.-++|.|
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 44789999999997652 22221 2455677778753 22222211 12 44577899
Q ss_pred CC-CCCCC--CEEEeccccccCCh-------------------------------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 247 FD-SVPEG--DAILMKWILHCWDD-------------------------------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 247 ~~-~~p~~--D~i~~~~~lh~~~~-------------------------------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.. -+|.+ |+++++..||+++. +|...+|+.=.+-|+|||+++++-.
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 88 67876 99999999998752 1344577777778999999999888
Q ss_pred ccCCCCCCCch--hhhhhhhhhhhhhhcCC-------------CccCCHHHHHHHHHHcC-CceeEE
Q 018366 293 IVPEIPEVSSS--ARETSLLDVLLMTRDGG-------------GRERTKKEFTELAIAAG-FKHINF 343 (357)
Q Consensus 293 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~ 343 (357)
..++....... ..+...-+.++-....| -..+|.+|++..+++.| |++.++
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 77653221110 00011111111111111 13469999999998876 555444
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.11 E-value=0.00013 Score=51.81 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=55.2
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhh
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYF 109 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l 109 (357)
++..-.++.|+..|...|+.|..+||+.+++ .+..+.+.|+.|+..|+|+.....+++ .|++|+.+...
T Consensus 12 ~l~~p~r~~IL~~L~~~~~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~ 83 (100)
T d1ub9a_ 12 ILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEE 83 (100)
T ss_dssp HHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHH
T ss_pred hcCCHHHHHHHHHhccCCCeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHH
Confidence 4445667888999976679999999999999 899999999999999999975322222 48888887643
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=97.05 E-value=0.0003 Score=50.56 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=51.7
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
..+|..-.++.|+..|...|+.++.+|++.+|+ .+..+++.|+.|...|+|.....+..-.|+++
T Consensus 25 ~kaLadp~Rl~Il~~L~~~~~~~v~ela~~l~~----s~s~vS~HL~~L~~aGlv~~~r~G~~~~Y~l~ 89 (108)
T d1u2wa1 25 LKAIADENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLG 89 (108)
T ss_dssp HHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEES
T ss_pred HHHhCCHHHHHHHHHHHhCCCccHHHHHHHHcc----ChhHHHHHHHHHHHCCeeEEEEECCEEEEEEC
Confidence 456778889999999976568999999999999 89999999999999999997532222346543
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=97.00 E-value=0.00029 Score=49.69 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=49.7
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
++|.--.++.|+..|.+ |+.++.|||+.+|+ .+..+++.|+.|...|+|.....+..-.|+++
T Consensus 18 kaL~~p~Rl~Il~~L~~-~~~~v~ela~~l~i----s~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~ 80 (98)
T d1r1ta_ 18 AVLADPNRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQ 80 (98)
T ss_dssp HHHCCHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEES
T ss_pred HHhCCHHHHHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEECCEEEEEEC
Confidence 35556677788888887 59999999999999 89999999999999999997532222345543
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=96.92 E-value=0.00035 Score=48.82 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=50.5
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
.+|.--.++.|+..|.. |+.++.||++.+|+ .+..+++.|+.|...|+|.....+..-.|+++
T Consensus 13 kaL~d~~Rl~Il~~L~~-~~~~v~el~~~l~~----s~~~vS~HL~~L~~~glv~~~r~G~~~~Y~l~ 75 (94)
T d1r1ua_ 13 KALGDYNRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLD 75 (94)
T ss_dssp HHTCSHHHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEES
T ss_pred HHhCCHHHHHHHHHHHc-CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCceEEEEECCEEEEEEC
Confidence 35566678888899988 59999999999999 89999999999999999997532222346654
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.88 E-value=0.0031 Score=53.78 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=73.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC---------CCCceEEEcCCCCCCC----------CC-
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFDSVP----------EG- 253 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~p----------~~- 253 (357)
+...|+.+|||-=.-...+ ...++++++.+|.|++++..++ ..+..++..|+.++++ ..
T Consensus 89 g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~p 167 (297)
T d2uyoa1 89 GIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 167 (297)
T ss_dssp TCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCC
Confidence 4567888999988777665 3457889999999988874332 1345778888775321 12
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
-++++-.++++++.++..++|+.+.+...||+.|++-
T Consensus 168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 5778888999999999999999999999999988773
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.69 E-value=0.0011 Score=59.88 Aligned_cols=110 Identities=18% Similarity=0.150 Sum_probs=72.4
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-------------CCeEEEeec-hHHHHhCCC--------CCCc
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-------------QIKAVNFDL-PHVVQDAPS--------YAGV 239 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~--------~~~v 239 (357)
++.+++.+. .....+|+|-.||+|.++..+.+... +....++|. +.....++. ....
T Consensus 151 v~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 151 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 344555554 45567999999999999988776432 123667776 555544432 2346
Q ss_pred eEEEcCCCCCCCCC--CEEEeccccccCC---------------hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 240 EHVGGNMFDSVPEG--DAILMKWILHCWD---------------DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 240 ~~~~~D~~~~~p~~--D~i~~~~~lh~~~---------------~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.+..+|.+...+.. |+|+++=-+..-. ...-..++.++.+.|+|||+++++-+
T Consensus 230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 67888888744432 9998765552210 01124689999999999999988754
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.0058 Score=52.77 Aligned_cols=105 Identities=14% Similarity=0.238 Sum_probs=82.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC---------------------------CCCceEEEcCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------------------------YAGVEHVGGNM 246 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~D~ 246 (357)
+...|+-+|||.=.....+...+|+++++.+|.|++++.-++ .++..++..|+
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 456899999999988888988899999999999887763311 14678888998
Q ss_pred CC-C-C--------C-CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCC
Q 018366 247 FD-S-V--------P-EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPE 299 (357)
Q Consensus 247 ~~-~-~--------p-~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~ 299 (357)
.+ . . . +. -++++-.+|.+++.++..++|+.+.+..+ +|.+++.|++.+..+.
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~p~ 239 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQPN 239 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCSTT
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCCCC
Confidence 76 1 1 1 11 57888999999999999999999998885 5788889998655443
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.46 E-value=0.0013 Score=52.13 Aligned_cols=92 Identities=14% Similarity=0.096 Sum_probs=61.5
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC--------CCCceEEEcCCCC----CCCC--CCEEEec
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFD----SVPE--GDAILMK 259 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~----~~p~--~D~i~~~ 259 (357)
..+|||+-||||.++.+.+.+... +++.+|. +..++..++ ...+.+...|..+ .... .|+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 459999999999999999998754 7888887 555544332 1245666666544 1112 2999874
Q ss_pred cccccCChhHHHHHHHHHHH--hCCCCCEEEEE
Q 018366 260 WILHCWDDDHCLRILKNCYK--AIPDNGKVIVM 290 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~--~LkpgG~l~i~ 290 (357)
=-... ....++|..+.+ .|+|+|.+++-
T Consensus 123 PPY~~---~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 123 PPFHF---NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCSSS---CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhHhh---hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 43221 345677777765 68998877763
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.0022 Score=40.94 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=44.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
.++.|+..|.+++..|.+|||+.+|+ ....+.+-+..|...|+..... .+..|+++
T Consensus 6 ~~~~iL~~L~~~~~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~~~--~g~GY~L~ 61 (63)
T d1biaa1 6 VPLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV--PGKGYSLP 61 (63)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE--TTTEEECS
T ss_pred HHHHHHHHHHHCCcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEEEe--CCCeEEeC
Confidence 34567888888668999999999999 8999999999999999854431 24468764
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.0046 Score=54.19 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=64.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCCCC-----
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDSVP----- 251 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~p----- 251 (357)
.+.+.++ ..+..+|+|+-||+|.++..|++... +++++|. ++.++.|++ ..+++|+.+|..+.++
T Consensus 203 ~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~ 279 (358)
T d1uwva2 203 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 279 (358)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHhhc-cCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhh
Confidence 4455444 56678999999999999999998753 6777776 777776654 2678999999877332
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 252 -EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 252 -~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.. |+|++-= |..-+.++++.+.+. +|.-.++|
T Consensus 280 ~~~~d~vilDP-----PR~G~~~~~~~l~~~-~~~~ivYV 313 (358)
T d1uwva2 280 KNGFDKVLLDP-----ARAGAAGVMQQIIKL-EPIRIVYV 313 (358)
T ss_dssp TTCCSEEEECC-----CTTCCHHHHHHHHHH-CCSEEEEE
T ss_pred hccCceEEeCC-----CCccHHHHHHHHHHc-CCCEEEEE
Confidence 12 8887632 212223456665554 56555555
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=96.29 E-value=0.0034 Score=46.25 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=38.8
Q ss_pred HHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcce
Q 018366 48 EIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLY 100 (357)
Q Consensus 48 d~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y 100 (357)
-.|...+++|.++||+.+++ ++..++++|+.|...|+|...... +|.|
T Consensus 11 ~~la~~~~~ss~~IA~~~~~----~~~~v~kIl~~L~~aglV~s~rG~-~GGy 58 (127)
T d1xd7a_ 11 SLISMDEKTSSEIIADSVNT----NPVVVRRMISLLKKADILTSRAGV-PGAS 58 (127)
T ss_dssp HHHHTCSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCSSS-SSCE
T ss_pred HHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHhCcccccCCC-CCcc
Confidence 33444458999999999999 999999999999999999975332 3446
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.19 E-value=0.0025 Score=50.80 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=50.9
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC-----Ccceecchhch
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG-----ERLYGLTPVSK 107 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-----~~~y~~t~~~~ 107 (357)
+|..-.+..|++.|.+ ||.|+.+||+.+|+ .+..+++.|+.|...|+|....... ...|+++..+.
T Consensus 11 ~l~~~~R~~Il~~L~~-~~~~~~ela~~l~~----s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~ 81 (194)
T d2p4wa1 11 VLGNETRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (194)
T ss_dssp HHHSHHHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence 3444456667788877 59999999999999 8999999999999999998653221 12577777654
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=96.19 E-value=0.0016 Score=44.40 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=44.4
Q ss_pred HHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 50 IAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 50 L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
+...+++|..+||+.+++ .+..+.++|+.|+..|++........-.|.+|+.+..++
T Consensus 16 ~~~~~~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l 72 (85)
T d3ctaa1 16 ASNRAYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVL 72 (85)
T ss_dssp TSSEEECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeecccccccceECHHHHHHH
Confidence 333358999999999999 999999999999999999974311223477888776544
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=96.10 E-value=0.0068 Score=45.24 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=50.8
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
+.-++..|...|+.|+.+||+.+++ ++..+.+.++.|+..|+++....+++ -.+.+|+.+..++.
T Consensus 32 q~~iL~~i~~~~~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~ 99 (139)
T d2a61a1 32 QFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 99 (139)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHH
Confidence 3445666666678999999999999 89999999999999999997643322 34778888776554
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.99 E-value=0.0031 Score=45.11 Aligned_cols=46 Identities=15% Similarity=0.390 Sum_probs=40.2
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+..++..|...|+.|+.+||+.+|+ ++..+.+.|+-|+..|+|.+.
T Consensus 22 e~~v~~~L~~~g~~t~~eia~~~~i----~~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 22 DVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCC----CcchHHHHHHHHHhCCCEEEE
Confidence 3446667766679999999999999 999999999999999999865
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=95.88 E-value=0.0046 Score=40.36 Aligned_cols=45 Identities=18% Similarity=0.397 Sum_probs=40.7
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..|+..|...|+.|..|||+.+|+ .+.-+.++++.|...|+|.+.
T Consensus 9 ~~Il~~l~~~g~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~Glv~e~ 53 (71)
T d1z05a1 9 GRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHET 53 (71)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 457888888789999999999999 899999999999999999853
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=95.69 E-value=0.0086 Score=44.48 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=53.2
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
+..++.++..|...++.|..+||+.+++ ++..+.+.++-|+..|++.+...+.++ ...+|+.+..+..
T Consensus 33 t~~q~~vL~~i~~~~~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~~ 103 (136)
T d2bv6a1 33 TYPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 103 (136)
T ss_dssp CHHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHHH
Confidence 3455567788888779999999999999 889999999999999999976433333 4567777765443
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=95.58 E-value=0.0071 Score=38.24 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=39.2
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.|+..|.+ ||+|..|||+.+|+ ...-+.++++.|...|++.+.
T Consensus 3 ~Il~~i~~-~pisr~eLa~~~gl----s~~TVs~~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 3 RILKRIMK-SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE 45 (62)
T ss_dssp CSHHHHHH-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC
Confidence 47788887 59999999999999 899999999999999999964
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=95.58 E-value=0.01 Score=37.73 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=40.2
Q ss_pred ChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcce
Q 018366 45 GVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLY 100 (357)
Q Consensus 45 glfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y 100 (357)
.|.+.+.++| |.++.|||+.+|+ ++..++.+|+.|...|.+.+. ..+.|
T Consensus 11 ~I~~~~~~~g~~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvkI---~~d~y 61 (64)
T d1lvaa3 11 DLEDKYRVSRWQPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI---NDEFY 61 (64)
T ss_dssp HHHHHHHHHTTSCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES---SSSBE
T ss_pred HHHHHHHHcCCCCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---ccccc
Confidence 3455555544 9999999999999 999999999999999999975 24555
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0073 Score=39.24 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=41.0
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..|+..|...|+.|..|||+.+|+ .+.-+.++++.|...|+|.+.
T Consensus 8 ~~Il~~i~~~g~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~glv~e~ 52 (70)
T d1z6ra1 8 GAVYRLIDQLGPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 52 (70)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 347888888889999999999999 899999999999999999863
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=95.42 E-value=0.0077 Score=45.00 Aligned_cols=67 Identities=18% Similarity=0.114 Sum_probs=53.5
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
..+.-++..|.+.|+.|+.+||+.+++ ++..+.+.++.|+..|+|.+...+.+ -...+|+.+..++.
T Consensus 32 ~~q~~iL~~l~~~~~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 101 (140)
T d2etha1 32 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 101 (140)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHH
Confidence 345557888888789999999999999 99999999999999999998653333 25777777765543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.42 E-value=0.036 Score=42.50 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=62.5
Q ss_pred eEEEEcCCc--chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCC-CCCCEEEeccccccCChhHHHH
Q 018366 197 RLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSV-PEGDAILMKWILHCWDDDHCLR 272 (357)
Q Consensus 197 ~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~-p~~D~i~~~~~lh~~~~~~~~~ 272 (357)
+|+=||||. |.++..|.+..++.+++++|. ++.++.+++...+.....+..... ...|+|++.- |.+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhhh
Confidence 578899995 457778888888889999998 777777765544433333332211 2348988744 5567789
Q ss_pred HHHHHHHhCCCCCEEEEEe
Q 018366 273 ILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 273 ~L~~~~~~LkpgG~l~i~e 291 (357)
+++++.+.++++..+.-+-
T Consensus 78 vl~~l~~~~~~~~ii~d~~ 96 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTDQG 96 (171)
T ss_dssp HHHHHHHHSCTTCEEEECC
T ss_pred hhhhhhccccccccccccc
Confidence 9999999999987665443
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.31 E-value=0.01 Score=44.38 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=51.0
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++-++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|++....+++ .+.+|+.+..+.
T Consensus 36 ~~q~~vL~~l~~~~~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~ 104 (141)
T d1lnwa_ 36 PPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 104 (141)
T ss_dssp HHHHHHHHHHHSSTTCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHH
Confidence 445557778877768999999999999 999999999999999999986433322 356666665443
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=95.29 E-value=0.028 Score=41.90 Aligned_cols=66 Identities=23% Similarity=0.270 Sum_probs=51.4
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.++.++..|...||.|+.+||+.+++ ++..+.+.++.|+..|+|.+...+.++ .+.+|+.+..++.
T Consensus 36 ~q~~iL~~l~~~~~~t~~~la~~~~i----~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~ 104 (143)
T d1s3ja_ 36 AQLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 104 (143)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHH
Confidence 34446777777678999999999999 999999999999999999976433333 3677777765553
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.014 Score=50.30 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCC---CCCCceEEEcCCCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAP---SYAGVEHVGGNMFD 248 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~---~~~~v~~~~~D~~~ 248 (357)
....|||||+|.|.++..|++.. |. ++++++. +...+..+ ..++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~-~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPR-QYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCS-EEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCC-EEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 45689999999999999999874 42 5666655 43333332 24679999999874
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.13 E-value=0.0093 Score=47.11 Aligned_cols=54 Identities=7% Similarity=0.190 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 34 LPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 34 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
...+|..-.+..|+..|.+ ||.|+.+||+.+|+ .+..+++.|+.|...|+|...
T Consensus 12 ~~~~l~~p~R~~Il~~L~~-~~~s~~ela~~lg~----s~~~v~~hl~~L~~~glv~~~ 65 (190)
T d1ulya_ 12 VIKVMLEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 65 (190)
T ss_dssp HHHHHHSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3467777788889999976 69999999999999 899999999999999999754
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.011 Score=43.98 Aligned_cols=65 Identities=25% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++....+++ .+++|+.+..+.
T Consensus 35 ~q~~vL~~l~~~~~~t~~ela~~~~i----~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~ 102 (138)
T d1jgsa_ 35 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHhHHhCcCCCHHHHHHHHCC----CHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHH
Confidence 44556667766679999999999999 999999999999999999976433333 577777776554
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.83 E-value=0.032 Score=35.44 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=44.6
Q ss_pred HHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcc-eeeeccCCCcceecc
Q 018366 38 TQAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSSGERLYGLT 103 (357)
Q Consensus 38 l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~y~~t 103 (357)
+..--...|+..|.+. +++|+++||+.+++ .++-+.|-+..|...|+ +.. . .+.|.+.
T Consensus 4 ~k~eR~~~Il~~L~~~~~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~~---~-~gGY~L~ 63 (65)
T d1j5ya1 4 VRQERLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA---T-PRGYVLA 63 (65)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE---E-TTEEECC
T ss_pred hHHHHHHHHHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEE---e-CCCEEeC
Confidence 3344455678888654 37999999999999 89999999999999997 443 1 3578764
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=94.79 E-value=0.01 Score=42.21 Aligned_cols=46 Identities=11% Similarity=0.193 Sum_probs=38.0
Q ss_pred hChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 44 LGVFEIIA-KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 44 lglfd~L~-~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
..|+..|. ..||.|+.+||+.+++ ++..+.+.++.|+..|+|.+..
T Consensus 24 ~~iL~~L~~~~~~~t~~eLa~~~~i----~~~tvs~~l~~L~~~GlV~r~~ 70 (109)
T d2d1ha1 24 VAVLLKMVEIEKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc----cHhHHHHHHHHHHHCCCEEEee
Confidence 33454443 3458999999999999 9999999999999999999753
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=94.68 E-value=0.091 Score=38.43 Aligned_cols=66 Identities=11% Similarity=0.195 Sum_probs=49.8
Q ss_pred HHHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.......+. .+.+|+.+..+.
T Consensus 29 ~~q~~vL~~l~~~~~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~ 99 (135)
T d3broa1 29 GTQMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 99 (135)
T ss_dssp HHHHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHH
Confidence 3444566666654 36899999999999 999999999999999999976432222 477788766444
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=94.62 E-value=0.015 Score=43.53 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=48.3
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
-++..|...++.|..+||+.+++ ++..+.+.++-|+..|++.+...++++ ...+|+.+..+.
T Consensus 33 ~iL~~i~~~~~~t~~~la~~l~i----~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~ 97 (144)
T d1lj9a_ 33 LYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCc----cHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHH
Confidence 35556667668999999999999 999999999999999999986533333 466666666444
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=94.57 E-value=0.024 Score=42.09 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=36.2
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
+.|.++||+.+++ ++..++++|..|...|+|.... +.|.|.+.
T Consensus 23 ~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~r--G~GG~~L~ 65 (138)
T d1ylfa1 23 LCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--GPGGAGLL 65 (138)
T ss_dssp GCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEES
T ss_pred cCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec--CCCCceec
Confidence 7999999999999 9999999999999999999753 34667653
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.53 E-value=0.029 Score=47.90 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=63.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-C-CCCC-CEEEe--
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-S-VPEG-DAILM-- 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~-~p~~-D~i~~-- 258 (357)
..+..+|||+.+|.|.=+..++.... +..++..|. +.-+...++ ..++.+...|... + .... |.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 45678999999999998888887765 456788887 443333322 1456666666554 2 1222 66654
Q ss_pred ----cccc-------ccCChhHH-------HHHHHHHHHhCCCCCEEEEEeecc
Q 018366 259 ----KWIL-------HCWDDDHC-------LRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 259 ----~~~l-------h~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
..++ ..+..++. .++|.++.+.|||||+|+-..-.+
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 1111 12222222 478899999999999887765443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.49 E-value=0.041 Score=43.39 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=64.4
Q ss_pred CCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCC---------CCC-CEEEec
Q 018366 192 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSV---------PEG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~---------p~~-D~i~~~ 259 (357)
.++..+||.+|||. |..+..+++.....++++.|. ++-++.+++..- ..+.-....++ +.+ |+++-.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga-~~~~~~~~~~~~~~i~~~t~g~g~D~vid~ 101 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPEVDCAVDA 101 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc-cEEEeCCCcCHHHHHHHHhCCCCcEEEEEC
Confidence 67788999999997 667788888777668888887 666676665432 22211111111 223 777743
Q ss_pred ccc------cc-CChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 WIL------HC-WDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~~l------h~-~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
--. |+ .........|+.+.++++|||+++++-...
T Consensus 102 vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~ 143 (195)
T d1kola2 102 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV 143 (195)
T ss_dssp CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence 211 11 111123468999999999999999987543
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=94.42 E-value=0.026 Score=35.62 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=41.7
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|.+.|.+++..|..+||+.+|+ .+.-+.+-++-|...|++..
T Consensus 6 ~D~~IL~~L~~n~r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~giI~~ 51 (63)
T d2cfxa1 6 IDLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (63)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 45678899999889999999999999 89999999999999999984
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.40 E-value=0.011 Score=43.76 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=50.5
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
++.++..|...|+.|..+||+.+++ ++..+.+.++-|+..|+|++.....++ ...+|+.+..+..
T Consensus 32 q~~vL~~l~~~~~~t~~~la~~~~i----~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 99 (136)
T d2fbia1 32 QWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 99 (136)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHH
Confidence 4446667777679999999999999 999999999999999999976433222 3667777765543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.042 Score=46.13 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=64.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----C--CCceEEEcCCCC--C-CCCC-CEEEe--
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----Y--AGVEHVGGNMFD--S-VPEG-DAILM-- 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~--~-~p~~-D~i~~-- 258 (357)
..+..+|||+.+|.|.=+..+++...+..++..|. +.-+...++ . ..+.....|... . .+.. |.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 45678999999999999999999888888888886 332222211 1 223334344332 1 1222 77753
Q ss_pred ----cccc-------ccCChhH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 259 ----KWIL-------HCWDDDH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 259 ----~~~l-------h~~~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
..++ +.++..+ -.++|+++.+.|||||+|+-..-.+
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 2222 2233222 2478899999999999888766543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.028 Score=51.68 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=65.6
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC----CC--------------CeEEEeec-hHHHHhCCC------
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----PQ--------------IKAVNFDL-PHVVQDAPS------ 235 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~----p~--------------~~~~~~D~-~~~~~~a~~------ 235 (357)
.++.+++.+. .....+|+|-.||+|.++....+.. .. ....++|+ +.+...++.
T Consensus 152 Iv~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 152 LIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred hhHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 3444555554 4556799999999999988765532 11 13577776 555544431
Q ss_pred C-----CCceEEEcCCCC-C---CCCCCEEEecccccc-------------CChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 236 Y-----AGVEHVGGNMFD-S---VPEGDAILMKWILHC-------------WDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 236 ~-----~~v~~~~~D~~~-~---~p~~D~i~~~~~lh~-------------~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. ..-.+..+|.+. + .+..|+|+++=-+-. .+.. -..++.++.+.|+|||++.++-+
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~-~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccc-cHHHHHHHHHhccccCcEEEEEe
Confidence 0 122344555554 1 112288876543311 0111 23689999999999999998764
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.23 E-value=0.024 Score=35.38 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=41.7
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
++..|...|.+++..|..+||+++|+ .+..+.+-++.|...|++..
T Consensus 4 ~D~~Il~~L~~n~r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d2cyya1 4 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 49 (60)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 46678899999888999999999999 89999999999999999984
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.21 E-value=0.023 Score=35.51 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=41.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|...|.+++..|..+||+++|+ ++..+.+-++.|...|++..
T Consensus 4 ~D~kIl~~L~~n~r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d1i1ga1 4 RDKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 49 (60)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 34567888898888999999999999 89999999999999999984
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=94.20 E-value=0.012 Score=43.80 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=50.6
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
++.++..|...++.|..+||+.+++ ++..+.+.++-|+..|+|.+...++++ ...+|+.+..+..
T Consensus 35 q~~vL~~l~~~~~~t~~~La~~~~i----~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~ 102 (137)
T d1z91a1 35 QYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 102 (137)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHH
Confidence 3445666766568999999999999 999999999999999999986433333 3677888775554
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.025 Score=35.73 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=41.7
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|...|.+++..|..+||+++|+ ++..+.+=++.|...|++..
T Consensus 6 ~D~~IL~~L~~~~r~s~~eiA~~l~l----s~~~v~~Ri~rL~~~GiI~~ 51 (63)
T d2cg4a1 6 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 51 (63)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 45668889999889999999999999 89999999999999999984
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.16 E-value=0.032 Score=41.70 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=50.1
Q ss_pred HHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
..++.++..|... |++|+.+||+.+++ .+..+.++++-|+..|+|.+....++ -.+.+|+.+..+..
T Consensus 34 ~~q~~vL~~L~~~~g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~ 104 (145)
T d2hr3a1 34 FSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 104 (145)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHHH
Confidence 3456677777643 47999999999999 99999999999999999997532222 24777777775543
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=94.06 E-value=0.043 Score=35.47 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=32.9
Q ss_pred hCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 52 KAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 52 ~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+.| |.|..|||+.+|+. .+..+.+.|..|+..|+|.+.
T Consensus 20 ~~G~~Ps~rei~~~~g~~---S~stv~~~l~~Le~kG~I~r~ 58 (71)
T d1jhfa1 20 QTGMPPTRAEIAQRLGFR---SPNAAEEHLKALARKGVIEIV 58 (71)
T ss_dssp HHSSCCCHHHHHHHTTCS---SHHHHHHHHHHHHHTTSEEEC
T ss_pred HhCCCCCHHHHHHHcCCC---CHHHHHHHHHHHHHCcCeecC
Confidence 335 89999999999992 567899999999999999974
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.05 E-value=0.062 Score=41.66 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=59.2
Q ss_pred CCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEc---CCCC--------CCCCC-CEEE
Q 018366 192 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG---NMFD--------SVPEG-DAIL 257 (357)
Q Consensus 192 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~---D~~~--------~~p~~-D~i~ 257 (357)
.++..+||-+|+|. |.++..+++..--.++++.|. ++-.+.+++..--.++.. |..+ ..+.+ |+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 56678999999884 778888888764337888887 666666654422222221 1100 11233 8776
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
-.- .. ...++...+.|+|||+++++-...
T Consensus 106 d~v-----G~---~~~~~~a~~~l~~~G~iv~~G~~~ 134 (182)
T d1vj0a2 106 EAT-----GD---SRALLEGSELLRRGGFYSVAGVAV 134 (182)
T ss_dssp ECS-----SC---TTHHHHHHHHEEEEEEEEECCCCS
T ss_pred ecC-----Cc---hhHHHHHHHHhcCCCEEEEEeecC
Confidence 321 11 245788889999999999877533
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.01 E-value=0.029 Score=38.15 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=47.1
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
|++.+.+ +.+...|...+|+ +...+...|+.|+..|++.. .++.|.+|+.+..|+.
T Consensus 11 IL~~~~~--g~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~----~~~~Y~iT~kG~~~L~ 66 (90)
T d1r7ja_ 11 ILEACKS--GSPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQ----EGKQYMLTKKGEELLE 66 (90)
T ss_dssp HHHHHTT--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECHHHHHHHH
T ss_pred HHHHHhC--CCCccHHHHHcCC----CHHHHHHHHHHHHHCCCeee----cCCEEEECccHHHHHH
Confidence 3444444 4678999999999 99999999999999999985 2689999999998875
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.60 E-value=0.13 Score=37.56 Aligned_cols=62 Identities=21% Similarity=0.211 Sum_probs=46.4
Q ss_pred ChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 45 GVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 45 glfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++-.|...+ +.|..+||+.+++ ++..+.++++.|+..|+|++...++++ ...+|+.+..++
T Consensus 32 ~iL~~l~~~~~~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~ 97 (137)
T d2fbha1 32 LVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 97 (137)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHH
Confidence 3455565433 6899999999999 899999999999999999986433332 356666665444
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.061 Score=32.56 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=38.8
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
++.|..|..+...|+.+||.++++ +...+.|.|..|...|-+.+.
T Consensus 5 l~~l~~lg~~~~~tA~~LA~kl~v----pKk~iNr~LYsL~~kgkl~k~ 49 (59)
T d2gxba1 5 LKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE 49 (59)
T ss_dssp HHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCccchhHHHHHHHhCC----cHHHHHHHHHHHHHccchhhc
Confidence 345667776558999999999999 889999999999999999974
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=93.43 E-value=0.029 Score=41.60 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=47.7
Q ss_pred HHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.+.-++-.|.. +++.|..+||+.+++ ++..+.+.++.|+..|+|.....+.++ .+.+|+.+..++.
T Consensus 32 ~~~~~L~~l~~~~~~~t~~~la~~l~i----~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~~ 101 (140)
T d3deua1 32 THWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 101 (140)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHCC----CHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHHH
Confidence 34445666665 336999999999999 999999999999999999975432222 4777777765553
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=93.09 E-value=0.084 Score=36.21 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=53.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cc
Q 018366 24 HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RL 99 (357)
Q Consensus 24 ~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~ 99 (357)
..++++.+-|...+|.. |.. |+....||.+.+ |+ .+..|.+=|+.|+..|+|.+...++. -.
T Consensus 3 ~~l~ilg~kW~l~Il~~---------L~~-g~~rF~el~~~l~gi----s~~~Ls~rLk~Le~~glv~r~~~~~~p~~ve 68 (95)
T d2hzta1 3 ATLEVIGGKWKCVILCH---------LTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVE 68 (95)
T ss_dssp HHHHHHCSTTHHHHHHH---------HTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEE
T ss_pred HHHHHHcCCCHHHHHHH---------HHc-CCCCHHHHHHHhhcC----ChhHHHHHHHHHHHhHHHhheeccccccchh
Confidence 34555666666655543 334 588999999997 88 88999999999999999997543221 23
Q ss_pred eecchhchhhhc
Q 018366 100 YGLTPVSKYFVS 111 (357)
Q Consensus 100 y~~t~~~~~l~~ 111 (357)
|++|+.+..+..
T Consensus 69 Y~LT~~G~~L~p 80 (95)
T d2hzta1 69 YELSEYGRSLEG 80 (95)
T ss_dssp EEECTTGGGGHH
T ss_pred hhhhhhHHHHHH
Confidence 988888876653
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=92.88 E-value=0.028 Score=42.99 Aligned_cols=65 Identities=15% Similarity=-0.018 Sum_probs=49.8
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
+..++..|...++.|+.+||+.+++ ++..+.+.++.|+..|+|.+.....+. ...+|+.+..++.
T Consensus 43 q~~vL~~l~~~~~~t~~~la~~~~l----~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 110 (162)
T d2fxaa1 43 EHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 110 (162)
T ss_dssp HHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHhhhccCCCcCHHHHHHHHcC----CchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHHH
Confidence 3446777777678999999999999 899999999999999999975432222 4677887775553
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=92.74 E-value=0.033 Score=39.88 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=45.1
Q ss_pred hChhHHHH--hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhh
Q 018366 44 LGVFEIIA--KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYF 109 (357)
Q Consensus 44 lglfd~L~--~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l 109 (357)
+.++..|. +.++.|..+||+.+++ ++..+.+.++.|+..|+|.+...++++ ...+|+.+..+
T Consensus 35 ~~vL~~l~~~~~~~~t~~ela~~l~~----~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~ 101 (115)
T d1hsja1 35 IYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKAN 101 (115)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHH
T ss_pred HHHHHHHHccCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHH
Confidence 33555554 2347999999999999 999999999999999999976433222 25555555433
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.67 E-value=0.092 Score=38.93 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC--Ccc
Q 018366 22 YSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG--ERL 99 (357)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~~~ 99 (357)
....++++..-|...+|..+ .. |+....||.+.+|+ .+..|.+=|+.|+..|+|.+...+. ...
T Consensus 10 v~~~l~ilg~kW~l~Il~~l---------~~-G~~rf~el~~~lgi----s~~vLs~rL~~L~~~gLv~r~~~~~p~r~~ 75 (142)
T d2f2ea1 10 VARPLDVIGDGWSMLIVRDA---------FE-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQE 75 (142)
T ss_dssp TTTTHHHHCSSSHHHHHHHH---------HT-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCEE
T ss_pred HHHHHHHHcCCCHHHHHHHH---------Hc-CCCCHHHHHHHhhc----cHHHHHHHHHHHHHhcceeeecCCCCCeeE
Confidence 34456677777877777653 23 58999999999999 8889999999999999998642222 235
Q ss_pred eecchhchhhhc
Q 018366 100 YGLTPVSKYFVS 111 (357)
Q Consensus 100 y~~t~~~~~l~~ 111 (357)
|++|+.+..|..
T Consensus 76 Y~LT~~G~~L~p 87 (142)
T d2f2ea1 76 YRLTDKGRALFP 87 (142)
T ss_dssp EEECHHHHTTHH
T ss_pred EecCcCcchHHH
Confidence 999988876653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.78 Score=34.54 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=59.8
Q ss_pred CCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCC----------CCCC-CEEEe
Q 018366 192 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDS----------VPEG-DAILM 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~----------~p~~-D~i~~ 258 (357)
.++..+|+=+|+|. |..+..+++...-.++++.|. +.-.+.+++..--.+...+-.++ .+.+ |+|+-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 56678999999986 456666777665447888887 66666666543222222221110 1223 87765
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.- .. ...++...+.++|||+++++-..
T Consensus 104 ~~-----G~---~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 104 CT-----GA---EASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp CS-----CC---HHHHHHHHHHSCTTCEEEECSCC
T ss_pred cc-----CC---chhHHHHHHHhcCCCEEEEEecC
Confidence 32 11 35688999999999999997753
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.56 E-value=0.25 Score=37.20 Aligned_cols=87 Identities=11% Similarity=0.049 Sum_probs=56.2
Q ss_pred ceEEEEcCC--cchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHH
Q 018366 196 ERLVDVGGG--FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLR 272 (357)
Q Consensus 196 ~~vLDiG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~ 272 (357)
++|.=||+| -+.++..+.+. +..++++|. ++..+.+++...+.... +..+.....|+|++. .|+....+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~~-~~~~~~~~~DiIila-----vp~~~~~~ 72 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEAG-QDLSLLQTAKIIFLC-----TPIQLILP 72 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEEE-SCGGGGTTCSEEEEC-----SCHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccceee-eeccccccccccccc-----CcHhhhhh
Confidence 367778887 34556666654 567888898 66666665443332222 222233345998863 35678889
Q ss_pred HHHHHHHhCCCCCEEEEE
Q 018366 273 ILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 273 ~L~~~~~~LkpgG~l~i~ 290 (357)
+++++...++|+..++-+
T Consensus 73 vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 73 TLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp HHHHHGGGSCTTCEEEEC
T ss_pred hhhhhhhhcccccceeec
Confidence 999999999998866544
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=92.55 E-value=0.048 Score=39.62 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=46.9
Q ss_pred HhChhHHHHh--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 43 QLGVFEIIAK--AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~--~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
++-++..|.. .++.|+.+||+.+++ ++..+.+.++-|+..|+|.+....+++ ...+|+.+..++
T Consensus 35 q~~vL~~l~~~~~~~~~~~~ia~~l~~----~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~ 103 (125)
T d1p4xa2 35 EFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 103 (125)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHccCCCccHHHHHHHHCC----CcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHH
Confidence 4446666743 236899999999999 899999999999999999976433222 255666665444
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.35 E-value=0.73 Score=34.59 Aligned_cols=92 Identities=10% Similarity=0.098 Sum_probs=59.2
Q ss_pred CCCCceEEEEcCC-cchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-C-----------CCCC-CEE
Q 018366 192 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-S-----------VPEG-DAI 256 (357)
Q Consensus 192 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~-----------~p~~-D~i 256 (357)
.++..+|+-+||| .|.++..+++.. +.+++++|. ++-.+.+++..--.....|-.. + .+.+ |+|
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5667899999988 567777777765 579999997 5666666553222222222211 1 1233 777
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+-.- .. ...+..+.+.++|+|+++++-.
T Consensus 103 id~~-----g~---~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 103 IDCS-----GN---EKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp EECS-----CC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred eecC-----CC---hHHHHHHHHHHhcCCceEEEec
Confidence 6422 11 2568888899999999999764
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.32 E-value=0.051 Score=40.67 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=37.5
Q ss_pred ChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 45 GVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 45 glfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
.|+-.|... +|.|+.|||+.+|+ ++..+.+.++-|...|+|.+..
T Consensus 30 ~i~~~L~~~~~plt~~ela~~l~v----sk~~vs~~l~~L~~~GlV~r~~ 75 (151)
T d1ku9a_ 30 AVYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKVW 75 (151)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhCCCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCEEEEE
Confidence 355555433 48999999999999 9999999999999999998653
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=92.24 E-value=0.076 Score=33.07 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=34.7
Q ss_pred HHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 48 EIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 48 d~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
....+.|+++..+||+.+|+ .+.-+...++-|...|++...
T Consensus 14 ~l~~~~~~v~~~~iA~~L~v----s~~SVs~mikrL~~~GlV~~~ 54 (61)
T d2ev0a1 14 MLIEEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE 54 (61)
T ss_dssp HHHHHHSSCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHhcCCCccHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence 33334468999999999999 889999999999999999964
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=91.93 E-value=0.038 Score=39.54 Aligned_cols=62 Identities=10% Similarity=0.145 Sum_probs=45.7
Q ss_pred ChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 45 GVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 45 glfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.+...+.++ ...+|+.+...+
T Consensus 37 ~vL~~l~~~~~~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 103 (115)
T d2frha1 37 AVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 103 (115)
T ss_dssp HHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHH
Confidence 344455442 35899999999999 899999999999999999986433222 366777766444
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=91.56 E-value=0.068 Score=38.75 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=47.6
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++-++..|... +++|+.+||+.+++ .+..+.+.++.|+..|+|.+.....+. ...+|+.+...+
T Consensus 35 ~q~~iL~~l~~~~~~~~t~~eia~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~ 104 (125)
T d1p4xa1 35 KEFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (125)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHH
Confidence 344566666543 36899999999999 899999999999999999986433222 355666665443
|
| >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.15 Score=32.58 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=48.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcc-hHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPM-MLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
.+-.|++.|...|+.|+-.||+.+|+ +.. -+.+.|..|...|-|.+.. ..+-.|.++.-.
T Consensus 6 ~eekI~~~L~~~g~~~Al~iak~lGl----~kakeVN~~LY~L~k~g~v~k~~-~tPP~W~L~~~~ 66 (73)
T d1xmka1 6 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQG-TTPPIWHLTDKK 66 (73)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEEC-SSSCEEEECHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHhCC----CcHHHHhHHHHHHHHCCCeecCC-CCCCceeeecch
Confidence 46678999999889999999999999 663 5999999999999999752 234567776543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.30 E-value=1 Score=34.19 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=62.8
Q ss_pred HHhhcccCCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCC---------CCCC
Q 018366 185 ILEHYEGFQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDS---------VPEG 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~---------~p~~ 253 (357)
+++..+ .++..+|+=+|||. |..+..+++..--.+++..|. ++-.+.+++..--.++...-.++ .+.+
T Consensus 20 ~~~~a~-v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 20 AINTAK-VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp HHTTSC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HHHhhC-CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCC
Confidence 334333 66778999999997 888888888876557888887 55555555543333332111111 1223
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCC-CEEEEEee
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDN-GKVIVMNS 292 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~Lkpg-G~l~i~e~ 292 (357)
|+++-.- . ....+....+.++|| |+++++-.
T Consensus 99 ~d~vie~~-----G---~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 99 VDYSLDCA-----G---TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp BSEEEESS-----C---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CcEEEEec-----c---cchHHHHHHHHhhcCCeEEEecCC
Confidence 7776322 1 135688999999996 99999764
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.18 E-value=0.057 Score=47.17 Aligned_cols=92 Identities=9% Similarity=-0.001 Sum_probs=64.4
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---------------------CCceEEEcCCCC---C
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------AGVEHVGGNMFD---S 249 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~D~~~---~ 249 (357)
+.+|||..||+|..+...+...+..+++..|+ +..++.+++. ..+.+...|... .
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 56999999999999998888777667888998 7777666531 123445555433 1
Q ss_pred CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 250 VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 250 ~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.... |+|.+-- + ..+..+|..+.++++.||.|++.-+
T Consensus 126 ~~~~fDvIDiDP----f--Gs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 126 RHRYFHFIDLDP----F--GSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp STTCEEEEEECC----S--SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hcCcCCcccCCC----C--CCcHHHHHHHHHHhccCCEEEEEec
Confidence 2233 8877632 2 2235789999999999999998654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.07 E-value=0.31 Score=37.13 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=61.1
Q ss_pred HHhhcccCCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC------CC-CCC-C
Q 018366 185 ILEHYEGFQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD------SV-PEG-D 254 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~------~~-p~~-D 254 (357)
+.+..+ .++..+|+=+|||. |..+..+++.....++++.|. +.-.+.+++..-..++..+-.+ .. +.+ |
T Consensus 20 ~~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 20 CINALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp HHTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred HHHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence 344444 66778999999985 456777777766556777776 5555665554333444332211 01 223 7
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+|+-.- . ....++.+.+.++|+|+++++-.
T Consensus 99 ~vid~~-----G---~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 99 FALEST-----G---SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEEECS-----C---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEEcC-----C---cHHHHHHHHhcccCceEEEEEee
Confidence 766321 1 13567888899999999998754
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=90.84 E-value=0.15 Score=35.78 Aligned_cols=79 Identities=16% Similarity=0.112 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC
Q 018366 19 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE 97 (357)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 97 (357)
.-+.+...+++.+-|...+|.. |.. |+....||.+.+ |+ .+..|.+=|+.|+..|+|.+...++.
T Consensus 6 ~c~i~~al~iig~kW~~~Il~~---------L~~-g~~RF~el~~~l~gI----S~~~Ls~rLk~L~~~glv~R~~~~~~ 71 (108)
T d1z7ua1 6 QTSINLALSTINGKWKLSLMDE---------LFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNEL 71 (108)
T ss_dssp HHHHHHHHHTTCSTTHHHHHHH---------HHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred CCcHHHHHHHHcCCCHHHHHHH---------HHc-CCCCHHHHHHHCcCC----ChhHHHHHHHHHHHCCcceeeccCCC
Confidence 3456677777778887766654 444 488999999997 78 88999999999999999997532221
Q ss_pred ---cceecchhchhhhc
Q 018366 98 ---RLYGLTPVSKYFVS 111 (357)
Q Consensus 98 ---~~y~~t~~~~~l~~ 111 (357)
-.|.+|+.+..+..
T Consensus 72 p~~veY~LT~~G~~L~p 88 (108)
T d1z7ua1 72 PPRVEYTLTPEGYALYD 88 (108)
T ss_dssp SCEEEEEECHHHHHHHH
T ss_pred cceehhhhchhHHHHHH
Confidence 23999999886664
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=90.67 E-value=0.13 Score=35.70 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCC---
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSG--- 96 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--- 96 (357)
+.....+++.+-|...+|.. |.. |+....||.+.+ |+ .+..|.+=|+.|+..|+|.+....+
T Consensus 9 pv~~~l~ilg~kW~l~Il~~---------L~~-g~~rF~el~~~l~gI----s~~~Ls~rLkeL~~~glv~r~~~~~~p~ 74 (102)
T d2fswa1 9 PVRKSMQIFAGKWTLLIIFQ---------INR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPP 74 (102)
T ss_dssp HHHHHHHHHTSSSHHHHHHH---------HTT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred CHHHHHHHHcCCCHHHHHHH---------Hcc-CCCCHHHHHhhCccc----chhHHHHHHHHHHHCCceeecccCCCCC
Confidence 57788888988888877654 233 488999999997 88 8889999999999999999754322
Q ss_pred Ccceecchhchhhhc
Q 018366 97 ERLYGLTPVSKYFVS 111 (357)
Q Consensus 97 ~~~y~~t~~~~~l~~ 111 (357)
.-.|++|+.+..+..
T Consensus 75 ~veY~LT~~G~~L~p 89 (102)
T d2fswa1 75 RVEYSLTPLGEKVLP 89 (102)
T ss_dssp EEEEEECHHHHTTHH
T ss_pred eehhhhhHhHHHHHH
Confidence 124999998876653
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.38 E-value=0.21 Score=31.16 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=34.0
Q ss_pred HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 51 AKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 51 ~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.++++++..+||+.+|+ .+.-+.+.++-|...|+|...
T Consensus 19 ~~~~~v~~~~iA~~L~v----s~~SVt~mvkrL~~~Glv~~~ 56 (63)
T d2isya1 19 EEGVTPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA 56 (63)
T ss_dssp HTTCCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred hcCCCCcHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence 44458999999999999 889999999999999999963
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=89.58 E-value=0.15 Score=36.09 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCC---
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSG--- 96 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--- 96 (357)
+.....+++.+-|...+|.. |.. |+....||.+.+ |+ .+..|.+=|+.|+..|+|.+...+.
T Consensus 13 pv~~~l~~ig~kW~l~Il~~---------L~~-g~~RF~el~~~l~gi----s~~~Ls~rL~~Le~~glv~R~~~~~~p~ 78 (114)
T d1yyva1 13 PSREVLKHVTSRWGVLILVA---------LRD-GTHRFSDLRRKMGGV----SEKMLAQSLQALEQDGFLNRVSYPVVPP 78 (114)
T ss_dssp THHHHHHHHHSHHHHHHHHH---------GGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSC
T ss_pred CHHHHHHHHcCCCHHHHHHH---------Hhc-CCCCHHHHHHHcccc----chhHHHHHHHHHHHHHHHhhcccCCCCc
Confidence 46778888888888877654 333 488899999998 78 8889999999999999999764322
Q ss_pred Ccceecchhchhhhc
Q 018366 97 ERLYGLTPVSKYFVS 111 (357)
Q Consensus 97 ~~~y~~t~~~~~l~~ 111 (357)
.-.|.+|+.+..+..
T Consensus 79 ~veY~LT~~G~~L~~ 93 (114)
T d1yyva1 79 HVEYSLTPLGEQVSD 93 (114)
T ss_dssp EEEEEECHHHHHHHH
T ss_pred hhHhHhhHhHHHHHH
Confidence 124999999887664
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.37 E-value=0.58 Score=35.20 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=57.2
Q ss_pred hhcccCCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC---CCCCC-CEEEecc
Q 018366 187 EHYEGFQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD---SVPEG-DAILMKW 260 (357)
Q Consensus 187 ~~l~~~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~p~~-D~i~~~~ 260 (357)
+..+ .++..+|+=+|+|. |.++..+++.. +.+.++.|. ++-.+.+++..--.++..+-.. ....+ |+++-.-
T Consensus 24 ~~~~-~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~ 101 (168)
T d1uufa2 24 RHWQ-AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV 101 (168)
T ss_dssp HHTT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECC
T ss_pred HHhC-CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeee
Confidence 3344 66778899999874 77888888876 567777775 4444444433222233221111 11123 8776432
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.- + ..++...+.++|+|+++++-.
T Consensus 102 g~-----~---~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 102 AA-----P---HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp SS-----C---CCHHHHHTTEEEEEEEEECCC
T ss_pred ec-----c---hhHHHHHHHHhcCCEEEEecc
Confidence 11 1 236677789999999999754
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.25 E-value=0.93 Score=37.63 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=40.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD 248 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~ 248 (357)
..+..+|||+.+|.|.=+..++... ++.+++.+|. +.-++..++ ..++.+...|+..
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~ 156 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 156 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhh
Confidence 4567799999999999888888764 4567888887 443333322 2567888888765
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.10 E-value=0.085 Score=40.53 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=44.7
Q ss_pred ChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 45 GVFEIIAKAG---KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 45 glfd~L~~~g---~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.|+-.|...| +.|..+||+.+++ ++..+.+.++-|+..|+|.+.....++ ..++|+.+..++.
T Consensus 66 ~vL~~L~~~~~~~~lt~~eLa~~l~i----~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~~ 134 (172)
T d2fbka1 66 DLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 134 (172)
T ss_dssp HHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHCc----CHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHHH
Confidence 3455554433 3799999999999 899999999999999999975322222 3567777665543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.07 E-value=0.47 Score=35.78 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=59.2
Q ss_pred HhhcccCCCCceEEEEcC-C-cchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC--------CCCCC-
Q 018366 186 LEHYEGFQNVERLVDVGG-G-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD--------SVPEG- 253 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~-G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~--------~~p~~- 253 (357)
++..+ .++..+|+=+|| | .|..+..+++.....++++.+. ++-.+.+++..--.++..+-.+ ..+..
T Consensus 20 l~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 20 VRKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp HHHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred HHHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccc
Confidence 34444 667789999996 3 5666777777766567888886 5444444432211233322211 11233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+++-... . ...++.+.+.++|||+++++-.
T Consensus 99 d~vid~~g-----~---~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 99 DAVIDLNN-----S---EKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp EEEEESCC-----C---HHHHTTGGGGEEEEEEEEECCS
T ss_pred hhhhcccc-----c---chHHHhhhhhcccCCEEEEecc
Confidence 77765321 1 2556777889999999998864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.47 E-value=0.41 Score=36.49 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=58.0
Q ss_pred CCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcC---CCC---C--CCCC-CEEEecc
Q 018366 192 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN---MFD---S--VPEG-DAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D---~~~---~--~p~~-D~i~~~~ 260 (357)
.++..+|+=+|||. |..+..+++..--.++++.|. ++-.+.+++..-..++... ..+ . .+.+ |+|+-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 56777899899986 788888888764346888887 5555555543222222211 111 1 1223 8776432
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-- ...++...+.++|+|+++++-.
T Consensus 105 g~--------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 105 GG--------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp SC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CC--------HHHHHHHHHHHhcCCEEEEEee
Confidence 11 2457788899999999999764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=87.56 E-value=2 Score=32.10 Aligned_cols=93 Identities=10% Similarity=0.017 Sum_probs=57.4
Q ss_pred CCCCceEEEEcCCcc-hHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCC--C-----CCCCC-CEEEeccc
Q 018366 192 FQNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMF--D-----SVPEG-DAILMKWI 261 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~--~-----~~p~~-D~i~~~~~ 261 (357)
.++..+||-+|+|.. ..+..+++.....++++.|. ++-.+.+++.....++..+-. + ..+.+ |+|+-.-
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~- 108 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV- 108 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS-
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec-
Confidence 456678999998854 55667777665567788887 555555555443344433211 0 01223 7666422
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.. ...+....+.|+|||+++++-.
T Consensus 109 ----g~---~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 109 ----GS---QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp ----CC---HHHHHHGGGGEEEEEEEEECCC
T ss_pred ----Cc---chHHHHHHHHHhCCCEEEEEeC
Confidence 11 2457888899999999999763
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.46 E-value=0.72 Score=34.49 Aligned_cols=91 Identities=10% Similarity=0.047 Sum_probs=56.8
Q ss_pred CCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCC-------CCC-CEEEeccc
Q 018366 192 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSV-------PEG-DAILMKWI 261 (357)
Q Consensus 192 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~-------p~~-D~i~~~~~ 261 (357)
.++..+|+=+|+|. |..+..+++.. +.+++.+|. ++-.+.+++..--.++..+-.+.. +.. |+|.+...
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~ 103 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS 103 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc
Confidence 56677888899874 66777777776 578999997 556666665433333332211110 112 34433221
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
...+....+.|+|||+++++-.
T Consensus 104 ---------~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 104 ---------NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp ---------HHHHHHHHTTEEEEEEEEECCC
T ss_pred ---------chHHHHHHHHhcCCcEEEEEEe
Confidence 2457888899999999998753
|
| >d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Dlm-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.03 E-value=0.27 Score=28.84 Aligned_cols=53 Identities=9% Similarity=0.251 Sum_probs=43.2
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 43 QLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 43 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
|-.|+..|.+.| |..+.+|++++++ +...+.+.|..|...+-+... +.+.|++
T Consensus 3 EQkILQVL~dagspvk~~ql~k~cqV----pkk~lNqVL~rlkke~kVsl~---~patW~l 56 (57)
T d1j75a_ 3 EQKILQVLSDDGGPVKIGQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP---EPATWSI 56 (57)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE---ETTEEEE
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHCC----CHHHHHHHHHHHHhccccccC---CCccccC
Confidence 556788888765 9999999999999 888999999999988888753 3566653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.90 E-value=0.11 Score=39.53 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=56.4
Q ss_pred CCCCceEEEEcCC-cchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEc-CCCC---CCCCC-CEEEec-cccc
Q 018366 192 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG-NMFD---SVPEG-DAILMK-WILH 263 (357)
Q Consensus 192 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~-D~~~---~~p~~-D~i~~~-~~lh 263 (357)
.++..+|+-+|+| .|..+..+++.. +.+++++|. ++-.+.+++..--.++.. +-.+ ..... |+++-. ..-+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 5677899999998 567777777764 678888887 555555554321123322 1111 12233 766543 2222
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.. .+....+.|+|+|+++++-.
T Consensus 104 ~~-------~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 104 DI-------DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp TC-------CTTTGGGGEEEEEEEEECCC
T ss_pred cc-------hHHHHHHHhhccceEEEecc
Confidence 21 13456778999999999763
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=86.79 E-value=0.41 Score=41.35 Aligned_cols=60 Identities=10% Similarity=0.204 Sum_probs=36.4
Q ss_pred cCcchHHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-------CCCeEEEeec
Q 018366 162 GNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------PQIKAVNFDL 226 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~ 226 (357)
..|+....|....+.. ...+...+. .++..+|||+|+|+|.++..+++.. ..+.+..++.
T Consensus 52 Tsp~is~~Fg~~ia~~----~~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~ 118 (365)
T d1zkda1 52 TSPEISQMFGELLGLW----SASVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 118 (365)
T ss_dssp SHHHHCHHHHHHHHHH----HHHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCCchHHHHHHHHHHH----HHHHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEecc
Confidence 3444555565544321 123333343 3456789999999999998887653 2345677776
|
| >d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein YhgG domain: Hypothetical protein YhgG species: Escherichia coli [TaxId: 562]
Probab=86.25 E-value=0.57 Score=29.59 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=39.3
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 94 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 94 (357)
|=|.|+-.|...+.+|+..+.. +...+..+|+-|+++|=+++.++
T Consensus 7 vRD~iAL~G~~da~qlS~qL~~----P~Plv~AMLerL~aMGK~erie~ 51 (78)
T d1xn7a_ 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRIQE 51 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHcCcccHHHHHHHHcC----ChHHHHHHHHHHHHhhcceeccc
Confidence 4466777778999999999999 88999999999999999998643
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.20 E-value=3.1 Score=29.44 Aligned_cols=86 Identities=10% Similarity=0.067 Sum_probs=51.1
Q ss_pred ceEEEEcCCcchHHHHHHhhC--CCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCC-------CCCCCEEEeccccccC
Q 018366 196 ERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDS-------VPEGDAILMKWILHCW 265 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-------~p~~D~i~~~~~lh~~ 265 (357)
++|+=+|+ |.++..+++.+ .+..++++|. |+.++.+.+..++.++.||..++ +...|.++..-
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t----- 73 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT----- 73 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC-----
Confidence 35777776 55555555443 2467888887 77666655434678899998872 22237777631
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEE
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
++++.-.+.....+.+.+.-.+.
T Consensus 74 ~~d~~N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 74 GKEEVNLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEE
T ss_pred CcHHHHHHHHHHHHHcCCceEEE
Confidence 22333344555666787774443
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.89 E-value=0.39 Score=31.84 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=37.7
Q ss_pred ChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIA-KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~-~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.|++.|. .++.+|=++||+++|+ ....+++.|..|...|++...
T Consensus 22 ~v~~~L~~~~~evtDe~iA~~tgi----~in~VRk~Ly~L~~~~L~~y~ 66 (88)
T d1q1ha_ 22 DVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (88)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHhccCcCCHHHHHHHhCC----cHHHHHHHHHHHHhCCceEEE
Confidence 3777765 3347999999999999 899999999999999999864
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.44 E-value=1.1 Score=33.63 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=57.1
Q ss_pred CCCCceEEEEcC--CcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEc---CCCCC-----CCCC-CEEEec
Q 018366 192 FQNVERLVDVGG--GFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG---NMFDS-----VPEG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~---D~~~~-----~p~~-D~i~~~ 259 (357)
+++..+||-.|+ |.|..+..+++.. +.++++.+. ++-.+.+++.+--.++.. |+.+. -+.+ |+|+..
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 667789999995 5678888888876 567777764 555555554432233322 11110 1223 877753
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. . ...+....+.|+|+|+++.+-
T Consensus 105 ~-----g----~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 105 L-----A----NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp C-----H----HHHHHHHHHHEEEEEEEEECC
T ss_pred c-----c----HHHHHHHHhccCCCCEEEEEe
Confidence 2 1 245788889999999999874
|
| >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: 34L species: Yaba-like disease virus, YLDV [TaxId: 132475]
Probab=85.30 E-value=0.33 Score=30.57 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=37.2
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..+.|..+...|+.+||+.+|+ ...-+-|.|..|...|.|..+
T Consensus 15 ~l~~L~~~~~~tA~~LAk~Lg~----~Kk~VNr~LY~L~~~G~v~~~ 57 (70)
T d1sfua_ 15 EVLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 57 (70)
T ss_dssp HHHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcCCCCCchHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecC
Confidence 3456666558999999999999 889999999999999999975
|
| >d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MerB N-terminal domain-like domain: Alkylmercury lyase MerB species: Escherichia coli [TaxId: 562]
Probab=85.17 E-value=0.25 Score=29.84 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=25.2
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHH
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRL 82 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~ 82 (357)
++..|.++.|+|++.||.++|+ +.+.++.-|..
T Consensus 7 LLr~LA~G~PVs~~~LA~alg~----~~~eV~~aL~~ 39 (60)
T d1s6la1 7 LLRELAKGRPVSRTTLAGILDW----PAERVAAVLEQ 39 (60)
T ss_dssp HHHHHHTTCCBCHHHHHHHHTC----CHHHHHHHHTT
T ss_pred HHHHHhCCCCcCHHHHHHHhCC----CHHHHHHHHHh
Confidence 5678888669999999999999 66655554443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.44 E-value=0.77 Score=34.28 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=52.7
Q ss_pred CCCCceEEEEcCCcc-hHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCC-------CCC-CEEEeccc
Q 018366 192 FQNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSV-------PEG-DAILMKWI 261 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~-------p~~-D~i~~~~~ 261 (357)
.++..+||=.|+|.- ..+..+++. .+.++++.+. ++-.+.+++..--.++.. -.++. ..+ |.++...+
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 102 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNP-LKEDAAKFMKEKVGGVHAAVVTAV 102 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECT-TTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceeccc-ccchhhhhcccccCCCceEEeecC
Confidence 566788998998864 455555555 4568888886 555555554322222211 11111 122 33332221
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. ...+....+.|+|||+++++-.
T Consensus 103 ----~----~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 103 ----S----KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp ----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred ----C----HHHHHHHHHHhccCCceEeccc
Confidence 1 2568899999999999999753
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=84.40 E-value=0.78 Score=28.88 Aligned_cols=56 Identities=21% Similarity=0.382 Sum_probs=40.7
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCccee
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYG 101 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~ 101 (357)
.|...+..|-|.. +..++..+||+.+|+ ...-+++-++.|+..|+|... .+.|.|.
T Consensus 10 ~l~~~I~~g~~~~---G~~l~~~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~--~~~G~~V 65 (69)
T d2hs5a1 10 ILRDAIIDGTFRP---GARLSEPDICAALDV----SRNTVREAFQILIEDRLVAHE--LNRGVFV 65 (69)
T ss_dssp HHHHHHHHTSSCT---TCEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred HHHHHHHcCCCCC---cCccCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE--cCCEEEe
Confidence 3444444444433 125678999999999 899999999999999999975 3345554
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=84.12 E-value=2.4 Score=31.88 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=58.4
Q ss_pred HHhhcccCCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEE---cCCCC------CCCCC
Q 018366 185 ILEHYEGFQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVG---GNMFD------SVPEG 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~D~~~------~~p~~ 253 (357)
+.+... .++..+|+=+|+|. |..+..+++.....+++++|. ++-++.+++..-..++. .|... ..+.+
T Consensus 21 v~~~~~-~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 21 AVKTGK-VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp HHTTSC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HHHhhC-CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcccc
Confidence 344333 66778999999985 456777777766568999998 77777776643333332 11110 01223
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhC-CCCCEEEEEeec
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAI-PDNGKVIVMNSI 293 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L-kpgG~l~i~e~~ 293 (357)
|+++-.-.- ...+......+ +++|+++++-..
T Consensus 100 ~d~vi~~~g~--------~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 100 VGYTFEVIGH--------LETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp CCEEEECSCC--------HHHHHHHHTTSCTTTCEEEECSCC
T ss_pred ceEEEEeCCc--------hHHHHHHHHHhhcCCeEEEEEEcc
Confidence 766543211 13344544555 556999987654
|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=83.64 E-value=0.64 Score=29.74 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=34.7
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
+.|-++||+-+|+ .++.+.|.|..|...|++... .+.+..
T Consensus 27 ~lt~~elA~~lg~----sr~tvsr~l~~l~~~g~I~~~----~~~i~I 66 (73)
T d1zyba1 27 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIELH----RKEILI 66 (73)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEEE----TTEEEE
T ss_pred ecCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec----CCEEEE
Confidence 6899999999999 899999999999999999953 345544
|
| >d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Penicillinase repressor domain: Methicillin resistance regulatory protein MecI species: Staphylococcus aureus [TaxId: 1280]
Probab=83.05 E-value=0.29 Score=34.84 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=39.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.|+.|...|=+.||.|+.||.+.+....+..+.-+..+|+-|+.-|+|+..
T Consensus 8 ~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~ 58 (120)
T d1okra_ 8 AEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 58 (120)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhcccCccHHhHHHHHHHHHHCCCeEEE
Confidence 466777777777799999998887421111777899999999999999975
|
| >d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Heat-inducible transcription repressor HrcA, N-terminal domain domain: Heat-inducible transcription repressor HrcA, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.90 E-value=0.58 Score=31.11 Aligned_cols=40 Identities=8% Similarity=-0.012 Sum_probs=32.6
Q ss_pred HHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 50 IAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 50 L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
+..+.|.+..+|++.+++ ...+.-++..|..|...|+|..
T Consensus 18 ~~~g~Pv~s~~i~~~~~l--~~S~aTIRn~m~~LE~~G~l~~ 57 (87)
T d1stza1 18 IENKKPVSSQRVLEVSNI--EFSSATIRNDMKKLEYLGYIYQ 57 (87)
T ss_dssp HHHCSCBCHHHHHHHSCC--CSCHHHHHHHHHHHHHTTSEEC
T ss_pred HHcCCccCHHHHHHHhCC--CCCHHHHHHHHHHHHHCCcccC
Confidence 344339999999999887 1157789999999999999995
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| >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
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class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ReutB4095-like domain: Putative DNA-binding protein ReutB4095 species: Ralstonia eutropha [TaxId: 106590]
Probab=82.75 E-value=1 Score=28.57 Aligned_cols=52 Identities=27% Similarity=0.291 Sum_probs=42.5
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccC-CCcceecchhchhhh
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS-GERLYGLTPVSKYFV 110 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~y~~t~~~~~l~ 110 (357)
+-|..-|+++.++ +-..|+|.|..|.+.|++.....+ +.+.=++|+.+..++
T Consensus 24 ~WSLaklsKra~~----PMS~LRR~LTqL~~aGl~~t~~~edG~G~A~Lt~~G~~lc 76 (81)
T d2obpa1 24 PWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 76 (81)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CccHHHHHhhcCC----cHHHHHHHHHHHhhcCceeeeeccCCcceeeccHHHHHHH
Confidence 8999999999999 888999999999999999864332 345677777776555
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| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Catabolite gene activator protein (CAP), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.49 E-value=0.46 Score=29.97 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=32.1
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
|.|-+|||.-+|+ .++-+.|.|..|...|++...
T Consensus 29 ~lt~~~lA~~~G~----sRetvsr~L~~l~~~glI~~~ 62 (69)
T d1i5za1 29 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISAH 62 (69)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence 7999999999999 899999999999999999963
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| >d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PH0730 N-terminal domain-like domain: Hypothetical protein PH0730 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.87 E-value=0.99 Score=28.36 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=39.4
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
|+....||+.+++ .++.++..++.|...|+++.. ...-.+|+.+..++
T Consensus 17 PiGRr~La~~L~l----~Er~vRte~~~Lk~~gLI~~~----~~Gm~lTe~G~~~l 64 (69)
T d2p8ta1 17 PLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK----QRGHFLTLKGKEIR 64 (69)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHH
T ss_pred CccHHHHHHHcCC----cHHHHHHHHHHHHHCCCeeee----CCCCEECHhHHHHH
Confidence 9999999999999 999999999999999999963 23344677666554
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| >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional regulator YydK species: Bacillus subtilis [TaxId: 1423]
Probab=80.83 E-value=0.81 Score=29.58 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=35.4
Q ss_pred CC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCccee
Q 018366 55 KL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYG 101 (357)
Q Consensus 55 ~~-t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~ 101 (357)
.+ |..+||+.+++ ...-+++-++.|+..|++... .+.|.|.
T Consensus 21 ~LPse~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~--~g~G~~V 62 (78)
T d3bwga1 21 KLPVLETLMAQFEV----SKSTITKSLELLEQKGAIFQV--RGSGIFV 62 (78)
T ss_dssp BCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE--cCcEEEE
Confidence 45 89999999999 899999999999999999975 3456664
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| >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal domain of RPA32 domain: C-terminal domain of RPA32 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.64 E-value=1.3 Score=27.93 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=35.7
Q ss_pred CCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 55 KLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 55 ~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
++++.+|++++ ++ +...+..-++.|...|.+-.- -+++-|..|
T Consensus 23 Gi~~~el~~~l~~~----~~~~i~~aid~L~~eG~IYsT--iDddHfkst 66 (69)
T d1dpua_ 23 GLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYST--VDDDHFKST 66 (69)
T ss_dssp TEEHHHHHHHSTTS----CHHHHHHHHHHHHHTTSEEEC--SSTTEEEES
T ss_pred CcCHHHHHHHccCC----CHHHHHHHHHHHHhCCceecc--cccchhccc
Confidence 79999999998 78 889999999999999999852 245667654
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| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=80.43 E-value=0.18 Score=38.32 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=60.3
Q ss_pred CCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCC---CCCCCCEEEeccccccCC
Q 018366 194 NVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD---SVPEGDAILMKWILHCWD 266 (357)
Q Consensus 194 ~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~---~~p~~D~i~~~~~lh~~~ 266 (357)
++.+|+-||+|. |..+...+... +..++.+|. ++.+++.+.. .+++....+-.. .+.+.|+|+..-.+..-.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 467999999995 56677777776 578999997 5555544431 334444332211 223459998876554322
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
. ..-+=++..+.||||..++ |...+.
T Consensus 110 a--P~lIt~~mv~~Mk~GSVIV--Dvaidq 135 (168)
T d1pjca1 110 A--PILVPASLVEQMRTGSVIV--DVAVDQ 135 (168)
T ss_dssp C--CCCBCHHHHTTSCTTCEEE--ETTCTT
T ss_pred c--CeeecHHHHhhcCCCcEEE--EeecCC
Confidence 2 2234567788999998654 444443
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| >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Fatty acid responsive transcription factor FadR, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.41 E-value=0.85 Score=29.20 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=34.9
Q ss_pred CC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCccee
Q 018366 55 KL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYG 101 (357)
Q Consensus 55 ~~-t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~ 101 (357)
.+ |..+||+.+++ .+.-+++-++.|+..|+|... .+.|.|.
T Consensus 26 ~LPs~~eLa~~~~v----Sr~tvr~Al~~L~~~G~i~~~--~g~G~~V 67 (74)
T d1hw1a1 26 ILPAERELSELIGV----TRTTLREVLQRLARDGWLTIQ--HGKPTKV 67 (74)
T ss_dssp BCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--TTEEEEE
T ss_pred CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE--eCceEEE
Confidence 45 89999999999 899999999999999999975 3345554
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| >d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Putative arsenical resistance operon repressor AF0168 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.28 E-value=1.5 Score=27.76 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=49.6
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
.++..-++-.++..|.+ +.+-+||-+.+++ .+..++..|.+|...=.++++ ++.|+.|..++
T Consensus 26 ~av~nPvRrkiLrmi~k--grsedEIm~~l~L----SkkqldYHLk~LE~GfciErv----ge~w~~T~~G~ 87 (89)
T d1y0ua_ 26 YAVTNPVRRKILRMLDK--GRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV----GERWVVTDAGK 87 (89)
T ss_dssp HHHSCHHHHHHHHHHHT--TCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEEEECTTTC
T ss_pred HHHhhHHHHHHHHHHHc--cCCHHHHHHHhcc----CHHHHHHHHHHHHccceeEec----CCceeeccccc
Confidence 35556677788888897 7899999999999 899999999999876666643 67898876654
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