Citrus Sinensis ID: 018368

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MSIFFCWVAYLLLANSTFCASQMDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHcccccEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccHHHcccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccEEcccccccccEEcccccccccccccEEEcccccccccccccEEccccccHHHHHHHHHHHHHccccccccccHHHHHHHccccEEEEEc
Coil and Loop (DISEMBL)
MSIFFCWVAYLLLANSTFcasqmddgghrengrhkADQYKAAQgqwlmhhqpSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYREnslggnmsscppgcqisrgvkhmhhpqqhvhqLHHVseaaysremhtgdalpvspgaseaakprrykrakepkvlspnkktaksprkvkrenedlnkvvfgkpsewksvqdldggdddvnkqstasksdwkgqvlglnqvtfdestmpppacsctgvlrqcykwgnggwqsaccttslsmyplpavpnkrharvggrkmsGSAFNKLLTRLAAeghdlshpvdlkdhwakhgtnryitik
Flexible Loop (DISEMBL)
MSIFFCWVAYLLLANSTFCASQMDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALpvspgaseaakprrykrakepkvlspnkktaksprkvkrenedlnkvvfgkpsewksvqdldggddDVNKQstasksdwkgqVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDlshpvdlkdhwakhgtnryitik
Low Complexity Region (SEG)
MSIFFCWVAYLLLANSTFCASQMDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGvkhmhhpqqhvhqlhhvSEAAYSREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Disordered region (IsUnstruct)
**IFFCWVAYLLLANSTFCA*************************WL****************************************AFLQRDTAIAERNNAILERDNAIASL***************************************************************************************************************************************GQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVP***************AFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYI***
Disordered Region (DISOPRED)
*SIFFCWVAYLLLANSTF******************************************************************************************************************************************************************************************************************************************GLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPA***************GSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Disordered Region (DISEMBL)
MSIFFCWVAYLLLANSTFCASQMDD*****************QGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPV*************************************ENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Disordered Region (DISPRO)
*SIFFCWVAYLLLANSTFC*************RHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPVSPG*************************************************************************WKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSIFFCWVAYLLLANSTFCASQMDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
Q8L999	342	Protein BASIC PENTACYSTEI	yes	no	0.904	0.944	0.689	1e-127
Q5VSA8	331	Barley B recombinant-like	yes	no	0.893	0.963	0.536	1e-90
Q8S8C6	296	Protein BASIC PENTACYSTEI	no	no	0.795	0.959	0.461	2e-76
F4JUI3	283	Protein BASIC PENTACYSTEI	no	no	0.775	0.978	0.469	7e-73
O82286	226	Protein BASIC PENTACYSTEI	no	no	0.322	0.508	0.591	2e-37
Q8GUC3	350	Protein Barley B recombin	N/A	no	0.364	0.371	0.519	2e-35
Q9C9X6	269	Protein BASIC PENTACYSTEI	no	no	0.291	0.386	0.586	3e-35
P0DH89	341	Barley B recombinant-like	no	no	0.448	0.469	0.408	1e-34
P0DH88	341	Barley B recombinant-like	no	no	0.448	0.469	0.408	1e-34
Q9LDE2	279	Protein BASIC PENTACYSTEI	no	no	0.296	0.379	0.556	1e-33

>sp|Q8L999|BPC6_ARATH Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thaliana GN=BPC6 PE=1 SV=1

 Score =  454 bits (1167), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/354 (68%), Positives = 281/354 (79%), Gaps = 31/354 (8%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 82
           MDDGGHRENGRHKA    A QGQWLM HQPSMKQ+M+I+AERDAA+QERNLA SEKKAA+
Sbjct: 1   MDDGGHRENGRHKA----AVQGQWLMQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAV 56

Query: 83  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSL----GGNMSSCPPGCQISRGVK 138
           AERDMAFLQRDTAIAERNNAI+ERD+A+ +LQYRENS+      NMS+CPPGCQISRGVK
Sbjct: 57  AERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVK 116

Query: 139 HMHHPQQHVHQ----LHHVSEAAY-SREMHTGDALPVSPGAS---EAAKPRRYKRAKEPK 190
           H+HHP  H H     +  ++E AY +REM   D LP SP A    E+AKP+R KR   PK
Sbjct: 117 HLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRV-NPK 175

Query: 191 VLS---PNKKTAKSPRKVKRENED-LNKVVFGKPSEWKSVQDLDGGDDDVNKQS-TASKS 245
             +    NK+  K+ RKVK+E+ED LNK++F K +        D  D+D +K     SKS
Sbjct: 176 ATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTH-------DYTDEDSSKHILIGSKS 228

Query: 246 DWKGQ-VLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVP 304
           DWK Q ++GLNQV +DE+TMPPP CSCTGVLRQCYKWGNGGWQS+CCTT+LSMYPLPA+P
Sbjct: 229 DWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALP 288

Query: 305 NKRHARVGGRKMSGSAFNKLLTRLAAEG-HDLSHPVDLKDHWAKHGTNRYITIK 357
           NKRHARVGGRKMSGSAFNKLL+RLAAEG HDLS+PVDLKDHWAKHGTNRYITIK
Sbjct: 289 NKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 342

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5VSA8|BBRD_ORYSJ Barley B recombinant-like protein D OS=Oryza sativa subsp. japonica GN=Os06g0130600 PE=2 SV=1

 Score =  333 bits (854), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/347 (53%), Positives = 234/347 (67%), Gaps = 28/347 (8%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLM-HHQPSMK-----QIMTIMAERDAALQERNLATS 76
           MD+ GHRENGR + DQYK    QW+M   Q  +K      ++ +M +RD A++ER+ A +
Sbjct: 1   MDNLGHRENGRQRPDQYKGLHTQWMMPQTQRHLKDHQSMNLLALMNDRDNAIRERDHALA 60

Query: 77  EKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQY-RENSLGGNMSSCPPGCQISR 135
           EKKAAIAERDMAF QRD A+AERN A++ERDNA+A+L+  R N L  N  +  P   +S 
Sbjct: 61  EKKAAIAERDMAFTQRDAAMAERNAAVVERDNALAALELARTNGLNMNNGNGFPQGSLS- 119

Query: 136 GVKHMHHPQQHVHQLH---HVSEAAY--SREMHTGDALPVSPGASEAAKPRRYKRAKEPK 190
           G K++HH  Q  H       ++++ Y  +REMH  +A P+S     A K +R K  K   
Sbjct: 120 GSKNIHHHDQLSHAQSSPLQLADSPYDHAREMHISEAYPISTAPGSAGKAKRPK--KNSS 177

Query: 191 VLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQ 250
             SP K+ +   RK K+ + D           WK+V     GDD  +  ++  K++WK Q
Sbjct: 178 QASPLKRPSGVLRKTKKPSGD-----------WKNVGMSGCGDDSAH--ASVMKNEWKDQ 224

Query: 251 VLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHAR 310
            LGLNQV FD+STMP PACSCTG LRQCYKWGNGGWQS+CCT ++SMYPLP +PNKRHAR
Sbjct: 225 NLGLNQVAFDDSTMPAPACSCTGKLRQCYKWGNGGWQSSCCTMNISMYPLPVMPNKRHAR 284

Query: 311 VGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           +GGRKMSG AF KLL+RLAAEGHDLS PVDLKDHWAKHGTNRYITI+
Sbjct: 285 MGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 331

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8S8C6|BPC4_ARATH Protein BASIC PENTACYSTEINE4 OS=Arabidopsis thaliana GN=BPC4 PE=1 SV=1

 Score =  286 bits (731), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/347 (46%), Positives = 205/347 (59%), Gaps = 63/347 (18%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQ----------IMTIMAERDAALQERN 72
           M++GG  +N R K D +K AQ  W M  Q  +K+          IM+I+AERDAA+ ERN
Sbjct: 1   MENGGQYDNARFKPDYFKGAQSMWNMIPQHQIKEQHNALVMNKKIMSILAERDAAVHERN 60

Query: 73  LATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSS--CPPG 130
            A S KK A+A RD A  QRD A++ER+ A++ERDNA A+LQ+ ENSL   +S   C  G
Sbjct: 61  QAVSAKKEAVAARDEALQQRDKALSERDKALIERDNAYAALQHHENSLNFALSGGKCVDG 120

Query: 131 CQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRRYKRAKEPK 190
                                   +     E H  +  P+S    E    +   + K   
Sbjct: 121 -----------------------DDCFGIGEPHKLEVFPLSTIPPEVTNTKVVNKRK--- 154

Query: 191 VLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQ 250
                K+  +   KVK+  EDLN+ V   P+  K                  S++DW  Q
Sbjct: 155 -----KENKQGLSKVKKVGEDLNRRV---PAPGKK-----------------SRTDWDSQ 189

Query: 251 VLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHAR 310
            +GLN VTFDE+TMP P CSCTG  RQCYKWGNGGWQS+CCTT+LS YPLP +PNKRH+R
Sbjct: 190 DVGLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSR 249

Query: 311 VGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           +GGRKMSG+ F++LL+RL+AEG+DLS PVDLKD+WA+HGTNRYITIK
Sbjct: 250 MGGRKMSGNVFSRLLSRLSAEGYDLSCPVDLKDYWARHGTNRYITIK 296

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JUI3|BPC5_ARATH Protein BASIC PENTACYSTEINE5 OS=Arabidopsis thaliana GN=BPC5 PE=1 SV=1

 Score =  274 bits (701), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 160/341 (46%), Positives = 204/341 (59%), Gaps = 64/341 (18%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLM-----HHQPSM-KQIMTIMAERDAALQERNLATS 76
           M+ GG  ENGR+K D YK  Q   +M     H+   M K+I++I+AERDAA++ERN A +
Sbjct: 1   MESGGQYENGRYKPDYYKGTQSVNVMPKKEQHNALVMNKKIISILAERDAAVKERNEAVA 60

Query: 77  EKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRG 136
             K A+A RD A  QRD A++ER+NAI+E ++A+ +L+YREN+L   +S    G      
Sbjct: 61  ATKEALASRDEALEQRDKALSERDNAIMETESALNALRYRENNLNYILSCAKRGG----- 115

Query: 137 VKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNK 196
                            S+   + E H  +  P+S    EAA  R  KR KE K      
Sbjct: 116 -----------------SQRFITEESHLPNPSPISTIPPEAANTRPTKRKKESK------ 152

Query: 197 KTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQ 256
                  + K+  EDLN+ V   P + KS +D D  D                 VL    
Sbjct: 153 -------QGKKMGEDLNRPV-ASPGK-KSRKDWDSND-----------------VL---- 182

Query: 257 VTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKM 316
           VTFDE TMP P C+CTG  RQCYKWGNGGWQS+CCTT+LS YPLP +PNKRH+RVGGRKM
Sbjct: 183 VTFDEMTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSEYPLPQMPNKRHSRVGGRKM 242

Query: 317 SGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           SGS F++LL+RLA EGH+LS PVDLK++WA+HGTNRYITIK
Sbjct: 243 SGSVFSRLLSRLAGEGHELSSPVDLKNYWARHGTNRYITIK 283

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|O82286|BPC7_ARATH Protein BASIC PENTACYSTEINE7 OS=Arabidopsis thaliana GN=BPC7 PE=1 SV=1

 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 87/115 (75%)

Query: 243 SKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPA 302
           +K + K   + ++  +FD S +PPP CSCTGV R CYKWG GGWQS+CCT S+S YPLP 
Sbjct: 112 TKREKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPM 171

Query: 303 VPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
              +  AR+ GRKMS  A+ KLL RLA EG+DLSHP+DLK+HWA+HGTN+++TIK
Sbjct: 172 STTRPGARLAGRKMSNGAYVKLLARLADEGYDLSHPLDLKNHWARHGTNKFVTIK 226

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUC3|BBR_HORVU Protein Barley B recombinant OS=Hordeum vulgare GN=BBR PE=1 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 92/131 (70%), Gaps = 1/131 (0%)

Query: 228 DLDGGDDDVNK-QSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGW 286
           D   G+D   K ++  S+   K   + +N + FD S +P P CSCTG  +QCY+WG GGW
Sbjct: 220 DATPGEDGAPKARAPRSRGPLKPVEMVINGIDFDISRIPTPVCSCTGAPQQCYRWGAGGW 279

Query: 287 QSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWA 346
           QSACCTTS+S YPLP    +R AR+ GRKMS  AF K+L +LA EG++L++P+DLK  WA
Sbjct: 280 QSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWA 339

Query: 347 KHGTNRYITIK 357
           KHGTN+++TI+
Sbjct: 340 KHGTNKFVTIR 350

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3.

Hordeum vulgare (taxid: 4513)

>sp|Q9C9X6|BPC3_ARATH Protein BASIC PENTACYSTEINE3 OS=Arabidopsis thaliana GN=BPC3 PE=1 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 82/104 (78%)

Query: 254 LNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGG 313
           +N V+ D   +P P CSCTG+ +QCY+WG GGWQSACCTT++SMYPLP    +R AR+ G
Sbjct: 166 INGVSMDIGGLPVPVCSCTGMPQQCYRWGCGGWQSACCTTNVSMYPLPVNTKRRGARIAG 225

Query: 314 RKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           RKMS  AF K+L +L+++G D S+P+DLK HWAKHGTN+++TI+
Sbjct: 226 RKMSQGAFRKVLEKLSSDGFDFSNPIDLKSHWAKHGTNKFVTIR 269

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DH89|BBRB_ORYSJ Barley B recombinant-like protein B OS=Oryza sativa subsp. japonica GN=Os10g0115200 PE=2 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 26/186 (13%)

Query: 172 PGASEAAKPRRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDG 231
           P   E   P++ ++ ++PKV       AK P+K     ED      G P           
Sbjct: 182 PVIDEPPPPKKRQQGRQPKV-----PRAKKPKKSAAPRED------GAPP---------- 220

Query: 232 GDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACC 291
                N  +   +   K   + +N +  D S +P P CSCTG  +QCY+WG GGWQSACC
Sbjct: 221 -----NAPAPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACC 275

Query: 292 TTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTN 351
           TT++S YPLP    +R AR+ GRKMS  AF K+L +LA EG++L++P+DLK  WAKHGTN
Sbjct: 276 TTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTN 335

Query: 352 RYITIK 357
           +++TI+
Sbjct: 336 KFVTIR 341

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0DH88|BBRA_ORYSJ Barley B recombinant-like protein A OS=Oryza sativa subsp. japonica GN=Os10g0114500 PE=2 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 26/186 (13%)

Query: 172 PGASEAAKPRRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDG 231
           P   E   P++ ++ ++PKV       AK P+K     ED      G P           
Sbjct: 182 PVIDEPPPPKKRQQGRQPKV-----PRAKKPKKSAAPRED------GAPP---------- 220

Query: 232 GDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACC 291
                N  +   +   K   + +N +  D S +P P CSCTG  +QCY+WG GGWQSACC
Sbjct: 221 -----NAPAPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACC 275

Query: 292 TTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTN 351
           TT++S YPLP    +R AR+ GRKMS  AF K+L +LA EG++L++P+DLK  WAKHGTN
Sbjct: 276 TTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTN 335

Query: 352 RYITIK 357
           +++TI+
Sbjct: 336 KFVTIR 341

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LDE2|BPC2_ARATH Protein BASIC PENTACYSTEINE2 OS=Arabidopsis thaliana GN=BPC2 PE=1 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 82/106 (77%)

Query: 252 LGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARV 311
           L +N V+ D S +P P C+CTG  +QCY+WG GGWQSACCTT++SM+PLP    +R AR+
Sbjct: 174 LVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARI 233

Query: 312 GGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
            GRKMS  AF K+L +LA++G +  +P+DLK HWA+HGTN+++TI+
Sbjct: 234 SGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 279

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
255538854	339	conserved hypothetical protein [Ricinus	0.938	0.988	0.805	1e-159
363807974	338	uncharacterized protein LOC100783502 [Gl	0.938	0.991	0.807	1e-159
225458065	337	PREDICTED: protein BASIC PENTACYSTEINE6	0.938	0.994	0.824	1e-154
363808282	336	uncharacterized protein LOC100809369 [Gl	0.932	0.991	0.766	1e-149
357438223	340	GAGA-binding transcriptional activator [	0.927	0.973	0.752	1e-144
224082960	335	predicted protein [Populus trichocarpa]	0.932	0.994	0.768	1e-142
449469901	338	PREDICTED: protein BASIC PENTACYSTEINE6-	0.935	0.988	0.758	1e-141
224066007	336	predicted protein [Populus trichocarpa]	0.932	0.991	0.775	1e-138
118723368	318	GAGA-binding transcriptional activator [	0.862	0.968	0.754	1e-134
319718191	323	GAGA-binding transcriptional activator [	0.901	0.996	0.723	1e-131

>gi|255538854|ref|XP_002510492.1| conserved hypothetical protein [Ricinus communis] gi|223551193|gb|EEF52679.1| conserved hypothetical protein [Ricinus communis]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/339 (80%), Positives = 300/339 (88%), Gaps = 4/339 (1%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 82
           MDDGGHRENGRHKADQYK AQGQWLM  QPSMKQIM IMAERDAA+ ERN+A SEKKAAI
Sbjct: 1   MDDGGHRENGRHKADQYKTAQGQWLMQAQPSMKQIMAIMAERDAAIHERNMAISEKKAAI 60

Query: 83  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSL-GGNM-SSCPPGCQISRGVKHM 140
           AERDMAFLQRD+AIAERNNAI+ERDNAIA+LQYRENS+  GNM SSCPPGCQISRGVKHM
Sbjct: 61  AERDMAFLQRDSAIAERNNAIMERDNAIATLQYRENSIPSGNMPSSCPPGCQISRGVKHM 120

Query: 141 HHPQQHVHQLHHVSEAAYS-REMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTA 199
           HHPQQH H + H SEA+YS REM T D LP+SP  SEAAKPRR KR+K+ K+   NKKT+
Sbjct: 121 HHPQQHAHHMPHSSEASYSTREMQTSDTLPMSPVGSEAAKPRRVKRSKDAKMAPSNKKTS 180

Query: 200 KSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQ-STASKSDWKGQVLGLNQVT 258
           KSPRK+KRE+EDLNKV+FGK  EWK+ QD+ GG DD+NKQ   ASKSDWKG  LGLNQ+ 
Sbjct: 181 KSPRKIKRESEDLNKVMFGKSHEWKNGQDMGGGADDLNKQLVVASKSDWKGHDLGLNQIA 240

Query: 259 FDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSG 318
           FDESTMP P CSCTGV RQCYKWGNGGWQS+CCTT+LSM+PLPAVPNKRHARVGGRKMSG
Sbjct: 241 FDESTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMHPLPAVPNKRHARVGGRKMSG 300

Query: 319 SAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           SAF+KLL+RLAAEG+DLS PVDLK+HWAKHGTNRYITIK
Sbjct: 301 SAFSKLLSRLAAEGYDLSSPVDLKEHWAKHGTNRYITIK 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807974|ref|NP_001242458.1| uncharacterized protein LOC100783502 [Glycine max] gi|255635590|gb|ACU18145.1| unknown [Glycine max]

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/338 (80%), Positives = 298/338 (88%), Gaps = 3/338 (0%)

Query: 23  MDDGGHRENGRHKA-DQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAA 81
           MDD GHRENGRHKA DQYK+AQ QWLM HQPSMKQIM IMAERDAA+QERNLA SEKKAA
Sbjct: 1   MDDAGHRENGRHKAADQYKSAQRQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAA 60

Query: 82  IAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLG-GNMSSCPPGCQISRGVKHM 140
            AERDMAF+QRD AIAERNNAILERDNAIA+LQYRE SL  G+M SCPPGCQISRGVKH+
Sbjct: 61  YAERDMAFMQRDAAIAERNNAILERDNAIATLQYRETSLSSGSMPSCPPGCQISRGVKHI 120

Query: 141 HHPQQHVHQLHHVSEAAYS-REMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTA 199
           HHPQQ VH + ++ +A+YS REMHT DALP +P  SEA KPRR KR KEPK  SPNKKT+
Sbjct: 121 HHPQQQVHHIPNMGDASYSTREMHTTDALPAAPIPSEAGKPRRAKRPKEPKSASPNKKTS 180

Query: 200 KSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTF 259
           K  +KVK+E+EDLNKV+FGK  EWKS Q++  G DD+NKQ T SK+DWKGQ LGLNQV +
Sbjct: 181 KPAKKVKKESEDLNKVMFGKSHEWKSGQEMVNGGDDLNKQLTVSKADWKGQDLGLNQVAY 240

Query: 260 DESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGS 319
           DESTMP P CSCTGVLRQCYKWGNGGWQSACCTT+LSMYPLPAVPNKRHARVGGRKMSGS
Sbjct: 241 DESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGS 300

Query: 320 AFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           AFNKLL+RLAAEGHDLS+PVDLKDHWAKHGTNRYITIK
Sbjct: 301 AFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458065|ref|XP_002278539.1| PREDICTED: protein BASIC PENTACYSTEINE6 [Vitis vinifera] gi|183604863|gb|ACC64529.1| GAGA-binding transcriptional activator BBR/BPC6-like [Vitis vinifera] gi|183604865|gb|ACC64530.1| GAGA-binding transcriptional activator BBR/BPC6-like [Vitis vinifera]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/337 (82%), Positives = 295/337 (87%), Gaps = 2/337 (0%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 82
           MD+GGHRENGRHKAD YKA   QWLM HQP+MKQIM IMAERD A+QERNLA SEKKAA+
Sbjct: 1   MDEGGHRENGRHKADPYKAVHSQWLMQHQPTMKQIMAIMAERDTAVQERNLALSEKKAAV 60

Query: 83  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSL-GGNMSSCPPGCQISRGVKHMH 141
           AERDMAFLQRDTAIAERNNAI+ERDNAIA+LQYRENSL GGNMS CPPGCQISRGVKHMH
Sbjct: 61  AERDMAFLQRDTAIAERNNAIMERDNAIATLQYRENSLNGGNMSPCPPGCQISRGVKHMH 120

Query: 142 HPQQHVHQLHHVSEAAYS-REMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTAK 200
           HPQ H+H   H+SEAAYS REMH GDALPVSP ASEAAK RR KR KE K +S NKK +K
Sbjct: 121 HPQPHLHHPTHLSEAAYSAREMHIGDALPVSPVASEAAKSRRAKRPKEAKPMSSNKKASK 180

Query: 201 SPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFD 260
             +K KRE EDLNK+VFGK  EWK  QD+  G DD+NKQ   SKSDWKGQ LGLNQVTFD
Sbjct: 181 PLKKPKREGEDLNKIVFGKSREWKGGQDMSSGGDDLNKQLVVSKSDWKGQDLGLNQVTFD 240

Query: 261 ESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSA 320
           ESTMP P CSCTGVLRQCYKWGNGGWQS+CCTT+LSMYPLPAVPNKRHARVGGRKMSGSA
Sbjct: 241 ESTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSA 300

Query: 321 FNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           FNKLL+RLAAEGHDLS PVDLKDHWAKHGTNRYITIK
Sbjct: 301 FNKLLSRLAAEGHDLSIPVDLKDHWAKHGTNRYITIK 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808282|ref|NP_001242497.1| uncharacterized protein LOC100809369 [Glycine max] gi|255635231|gb|ACU17970.1| unknown [Glycine max]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/338 (76%), Positives = 290/338 (85%), Gaps = 5/338 (1%)

Query: 23  MDDGGHRENGRHKA-DQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAA 81
           MDD GHRENGRHKA DQYK+AQGQWLM HQPSMKQIM ++AERDAA+QERNLA SEKKAA
Sbjct: 1   MDDAGHRENGRHKAADQYKSAQGQWLMQHQPSMKQIMAMIAERDAAIQERNLAISEKKAA 60

Query: 82  IAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLG-GNMSSCPPGCQISRGVKHM 140
            AERDMA++QRD AIAERNNA+LERD AIA+LQYRE SL  G+M SCPPGCQISRGVKH+
Sbjct: 61  YAERDMAYMQRDAAIAERNNAMLERD-AIATLQYRETSLSSGSMPSCPPGCQISRGVKHV 119

Query: 141 HHPQQHVHQLHHVSEAAY-SREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTA 199
           HHPQQ VH + ++ +A+Y +REMHT + LP +P  SE  K RR KR KEPK   PNKKT+
Sbjct: 120 HHPQQQVHHIPNMGDASYNTREMHTTEVLPAAPIPSETGKSRRAKRPKEPKSAPPNKKTS 179

Query: 200 KSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTF 259
           K  +KVK+E+EDLN + FGK  EWKS Q++  G DD+NKQ   SK+DWKGQ LGLNQV +
Sbjct: 180 KPSKKVKKESEDLNNM-FGKAHEWKSGQEMVNGGDDLNKQLAVSKADWKGQDLGLNQVAY 238

Query: 260 DESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGS 319
           DESTMP P CSCTGVLRQCYKWGNGGWQSACCTT+LSMYPLPAVPNKRHARVGGRKMSGS
Sbjct: 239 DESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGS 298

Query: 320 AFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           AFNKLL+RLAAE HDLS+PVDLKDHWAKHGTNRYITIK
Sbjct: 299 AFNKLLSRLAAESHDLSNPVDLKDHWAKHGTNRYITIK 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438223|ref|XP_003589387.1| GAGA-binding transcriptional activator [Medicago truncatula] gi|355478435|gb|AES59638.1| GAGA-binding transcriptional activator [Medicago truncatula]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/344 (75%), Positives = 292/344 (84%), Gaps = 13/344 (3%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLM----HHQPSMKQIMTIMAERDAALQERNLATSEK 78
           MDD   RENGRHKADQYK+AQGQWLM    H  PSMKQIM+IMAERDAA+QERNLA SEK
Sbjct: 1   MDD---RENGRHKADQYKSAQGQWLMQQHQHQHPSMKQIMSIMAERDAAIQERNLALSEK 57

Query: 79  KAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLG-GNMSSCPPGCQISRGV 137
           KAA+AERDMAFLQRDTAIAERNNA++ERDNAIA+LQ+REN+L  G MSSCPPGCQISRGV
Sbjct: 58  KAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGV 117

Query: 138 KHMHHPQQHVHQLHHVSEAAY-SREMHTGDALPVSPGASEAAKP-RRYKRAKEPKVLSPN 195
           KH+HH  Q V+ L ++ +++Y +RE+HT DALP +P + E  KP RR KR KE K  SPN
Sbjct: 118 KHIHHLPQQVNHLPNMGDSSYGTRELHTTDALPAAPVSLEVGKPPRRAKRPKESKSDSPN 177

Query: 196 KKTAKSPRKVKRENEDLNKVVFG--KPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLG 253
           KKT KS RKVK+E +DLNK +F   K  EWKS +++  GDDD+NKQ   SK+DWK Q L 
Sbjct: 178 KKTPKS-RKVKKEGDDLNKTMFANNKELEWKSSEEIINGDDDLNKQLAISKADWKPQDLA 236

Query: 254 LNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGG 313
           LNQV +D+STMP PACSCTGVLRQCYKWGNGGWQSACCTT+LS+YPLPAVPNKRHARVGG
Sbjct: 237 LNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGG 296

Query: 314 RKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           RKMSGSAFNKLL+RLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Sbjct: 297 RKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 340

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082960|ref|XP_002306908.1| predicted protein [Populus trichocarpa] gi|222856357|gb|EEE93904.1| predicted protein [Populus trichocarpa]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 259/337 (76%), Positives = 287/337 (85%), Gaps = 4/337 (1%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 82
           MDDG HRENGRHKADQYK AQGQWLM  QPSMKQIM IMAERDAA+ ERN+A SEKKAA+
Sbjct: 1   MDDGVHRENGRHKADQYKTAQGQWLMQPQPSMKQIMAIMAERDAAIHERNMALSEKKAAV 60

Query: 83  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLG-GNMSSCPPGCQISRGVKHMH 141
           AERDMAFLQRD+AIAERNNA+LERDNAIA+LQYRENS    N SS PPG   SRGVKHMH
Sbjct: 61  AERDMAFLQRDSAIAERNNALLERDNAIATLQYRENSFASANTSSSPPGYHNSRGVKHMH 120

Query: 142 HPQQHVHQLHHVSEAAY-SREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTAK 200
           H QQ    L H++E AY +REM T DA+P+SP ASEAAKPRR KR K+ +    NKKT+K
Sbjct: 121 H-QQQHIHLPHMNEGAYGTREMQTSDAVPISPVASEAAKPRRGKRPKDTQSTPSNKKTSK 179

Query: 201 SPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFD 260
           SP KVKRE+EDLN + FGK +EWK+ +D++GG D +NKQ  ASKSDWKGQ LGLNQV FD
Sbjct: 180 SPMKVKRESEDLNNM-FGKSNEWKNGEDMNGGGDGLNKQLAASKSDWKGQDLGLNQVAFD 238

Query: 261 ESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSA 320
           E+TMP P CSCTG  RQCYKWGNGGWQS+CCTT+LSMYPLPAVPNKRHARVGGRKMSGSA
Sbjct: 239 ETTMPAPVCSCTGFFRQCYKWGNGGWQSSCCTTALSMYPLPAVPNKRHARVGGRKMSGSA 298

Query: 321 FNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           F+KLL+RLAAEG DLS+PVDLKDHWAKHGTNRYITIK
Sbjct: 299 FSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469901|ref|XP_004152657.1| PREDICTED: protein BASIC PENTACYSTEINE6-like [Cucumis sativus] gi|449517054|ref|XP_004165561.1| PREDICTED: protein BASIC PENTACYSTEINE6-like [Cucumis sativus]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 257/339 (75%), Positives = 285/339 (84%), Gaps = 5/339 (1%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 82
           MDD GHRENGRHK DQYK+AQGQW+M HQPSMKQIM IMAERDAA+QERNLA SEKKAA+
Sbjct: 1   MDDSGHRENGRHKPDQYKSAQGQWMMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAAL 60

Query: 83  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHH 142
           AERDMA+LQRD AIAERNNA+LERDNAIA+LQYRENS+  N+S CPPGCQI+RGVKH+HH
Sbjct: 61  AERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSINNNLS-CPPGCQIARGVKHIHH 119

Query: 143 PQQHVHQ-LHHVSEAAY-SREM-HTGDALPVSPGASEAAKPRRYKRAKEPKVL-SPNKKT 198
           PQQ     + H++E  Y SREM  + D  P SP ASE+ K RR KR KE K + +PNKK 
Sbjct: 120 PQQQHTHHVPHMNENNYNSREMLASNDPCPTSPVASESTKARRNKRPKEGKTVPTPNKKV 179

Query: 199 AKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVT 258
           +K PRKVKRE EDLNK++ GK  EWK    +    DD+NKQ   SKSDWKGQ LGLNQV 
Sbjct: 180 SKGPRKVKREAEDLNKIMLGKSQEWKDGIGIMSAGDDLNKQLVVSKSDWKGQDLGLNQVA 239

Query: 259 FDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSG 318
           FDESTMP P CSCTGV+RQCYKWGNGGWQSACCTT+LSMYPLPAVPNKRHAR+GGRKMSG
Sbjct: 240 FDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARLGGRKMSG 299

Query: 319 SAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           SAFNKLL+RLAAEGHDLS PVDLK+HWAKHGTNRYITIK
Sbjct: 300 SAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066007|ref|XP_002301996.1| predicted protein [Populus trichocarpa] gi|222843722|gb|EEE81269.1| predicted protein [Populus trichocarpa] gi|319718087|gb|ADV59345.1| GAGA-binding transcriptional activator [Populus trichocarpa] gi|319718089|gb|ADV59346.1| GAGA-binding transcriptional activator [Populus trichocarpa]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/338 (77%), Positives = 287/338 (84%), Gaps = 5/338 (1%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 82
           MDDGGHRENGRHKADQYK AQGQWLM  QPSMKQIM IMAERDAA+ ERN+A SEKKAAI
Sbjct: 1   MDDGGHRENGRHKADQYKTAQGQWLMQPQPSMKQIMAIMAERDAAIHERNMALSEKKAAI 60

Query: 83  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSL-GGNMSSCPPGCQISRGVKHMH 141
            ERDMAFLQRD+AIAERNNA+LERDNAIA+LQYRENSL  GNM++CPPG   SRGVKHMH
Sbjct: 61  TERDMAFLQRDSAIAERNNALLERDNAIATLQYRENSLPSGNMTTCPPGFHNSRGVKHMH 120

Query: 142 HPQQHVHQLHH-VSEAAY-SREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTA 199
           H QQ        ++E  Y +REM T DALPVSP ASE AKP+R KR K+ K    NKKT+
Sbjct: 121 HQQQQHTHHLPHMNEGPYGTREMQTSDALPVSPVASEVAKPQRGKRPKDAKATPSNKKTS 180

Query: 200 KSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTF 259
           KSPRKVKRE++D +  +FGK  EWK+ QD+DGG DD NKQ  ASKSDWKGQ LGLNQV F
Sbjct: 181 KSPRKVKRESDDTD--MFGKSHEWKNGQDMDGGGDDPNKQLAASKSDWKGQDLGLNQVAF 238

Query: 260 DESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGS 319
           DE+TMP P CSCTGV RQCYKWGNGGWQS+CCTT+LSMYPLPAVPNKRHARVGGRKMSGS
Sbjct: 239 DETTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGS 298

Query: 320 AFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           AF+KLL+RLAAEG DLS+PVDLKDHWAKHGTNRYITIK
Sbjct: 299 AFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118723368|gb|ABL10371.1| GAGA-binding transcriptional activator [Medicago truncatula] gi|118723370|gb|ABL10372.1| GAGA-binding transcriptional activator [Medicago truncatula]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/314 (75%), Positives = 269/314 (85%), Gaps = 6/314 (1%)

Query: 49  HHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDN 108
           H  PSMKQIM+IMAERDAA+QERNLA SEKKAA+AERDMAFLQRDTAIAERNNA++ERDN
Sbjct: 6   HQHPSMKQIMSIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDN 65

Query: 109 AIASLQYRENSLG-GNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAY-SREMHTGD 166
           AIA+LQ+REN+L  G MSSCPPGCQISRGVKH+HH  Q V+ L ++ +++Y +RE+HT D
Sbjct: 66  AIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPQQVNHLPNMGDSSYGTRELHTTD 125

Query: 167 ALPVSPGASEAAKP-RRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFG--KPSEW 223
           ALP +P + E  KP RR KR KE K  SPNKKT KS RKVK+E +DLNK +F   K  EW
Sbjct: 126 ALPAAPVSLEVGKPPRRAKRPKESKSDSPNKKTPKS-RKVKKEGDDLNKTMFANNKELEW 184

Query: 224 KSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGN 283
           KS +++  GDDD+NKQ   SK+DWK Q L LNQV +D+STMP PACSCTGVLRQCYKWGN
Sbjct: 185 KSSEEIINGDDDLNKQLAISKADWKPQDLALNQVAYDDSTMPAPACSCTGVLRQCYKWGN 244

Query: 284 GGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKD 343
           GGWQSACCTT+LS+YPLPAVPNKRHARVGGRKMSGSAFNKLL+RLAAEGHDLSHPVDLKD
Sbjct: 245 GGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKD 304

Query: 344 HWAKHGTNRYITIK 357
           HWAKHGTNRYITIK
Sbjct: 305 HWAKHGTNRYITIK 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319718191|gb|ADV59397.1| GAGA-binding transcriptional activator [Solanum tuberosum]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/336 (72%), Positives = 275/336 (81%), Gaps = 14/336 (4%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 82
           MDD G+R+NGRHK       QGQWLM HQPSMKQIM IMAERDAA+QERNLA SEKKAA+
Sbjct: 1   MDDSGNRDNGRHKP-----PQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAAL 55

Query: 83  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHH 142
           AERDMA LQRD+AIAERNNAI+ERDNAIA+LQYREN++ G         QI RGVKHMHH
Sbjct: 56  AERDMAILQRDSAIAERNNAIMERDNAIATLQYRENAMTGG--------QIVRGVKHMHH 107

Query: 143 PQQHVHQLHHVSEAAYS-REMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTAKS 201
           PQQHVH   H+ E  Y+ REMH  +A+PVSP A E AKPRR KRAKEPK ++ +KKT K+
Sbjct: 108 PQQHVHHQPHMGEPTYNPREMHMVEAIPVSPPAPEPAKPRRNKRAKEPKAVTGSKKTPKA 167

Query: 202 PRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDE 261
            +KVKRE EDLN+  +GK  EWK  Q++ G  DD+N+Q   SK DWK Q LGLNQV FDE
Sbjct: 168 SKKVKRETEDLNQTTYGKSPEWKGAQEMVGASDDLNRQLAVSKPDWKDQDLGLNQVAFDE 227

Query: 262 STMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAF 321
           +TMP P CSCTGVLR CYKWGNGGWQS+CCTT+LSMYPLPAVPNKRHAR+GGRKMSGSAF
Sbjct: 228 TTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAF 287

Query: 322 NKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
            KLL+RLAAEGHDLS+PVDLK++WAKHGTNRYITIK
Sbjct: 288 TKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK 323

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2162291	342	BPC6 "basic pentacysteine 6" [	0.904	0.944	0.666	1.5e-115
TAIR|locus:2053086	296	BPC4 "basic pentacysteine 4" [	0.347	0.418	0.695	4.1e-73
UNIPROTKB|Q8GUC3	350	BBR "Protein Barley B recombin	0.462	0.471	0.452	1.8e-41
TAIR|locus:2823945	279	BPC2 "basic pentacysteine 2" [	0.383	0.491	0.474	1e-36
TAIR|locus:2045842	283	BPC1 "basic pentacysteine1" [A	0.375	0.473	0.477	9.5e-34

TAIR|locus:2162291 BPC6 "basic pentacysteine 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
 Identities = 236/354 (66%), Positives = 270/354 (76%)

Query:    23 MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 82
             MDDGGHRENGRHKA    A QGQWLM HQPSMKQ+M+I+AERDAA+QERNLA SEKKAA+
Sbjct:     1 MDDGGHRENGRHKA----AVQGQWLMQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAV 56

Query:    83 AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSL----GGNMSSCPPGCQISRGXX 138
             AERDMAFLQRDTAIAERNNAI+ERD+A+ +LQYRENS+      NMS+CPPGCQISRG  
Sbjct:    57 AERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVK 116

Query:   139 XXXXXXXXXXXXXXX----SEAAY-SREMHTGDALPVSPGAS---EAAKPRRYKRAKEPK 190
                                +E AY +REM   D LP SP A    E+AKP+R KR   PK
Sbjct:   117 HLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRVN-PK 175

Query:   191 VLSP---NKKTAKSPRKVKRENED-LNKVVFGKPSEWKSVQDLDGGDDDVNKQST-ASKS 245
               +    NK+  K+ RKVK+E+ED LNK++F K +        D  D+D +K     SKS
Sbjct:   176 ATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTH-------DYTDEDSSKHILIGSKS 228

Query:   246 DWKGQ-VLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVP 304
             DWK Q ++GLNQV +DE+TMPPP CSCTGVLRQCYKWGNGGWQS+CCTT+LSMYPLPA+P
Sbjct:   229 DWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALP 288

Query:   305 NKRHARVGGRKMSGSAFNKLLTRLAAEGH-DLSHPVDLKDHWAKHGTNRYITIK 357
             NKRHARVGGRKMSGSAFNKLL+RLAAEGH DLS+PVDLKDHWAKHGTNRYITIK
Sbjct:   289 NKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 342

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

TAIR|locus:2053086 BPC4 "basic pentacysteine 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
 Identities = 89/128 (69%), Positives = 110/128 (85%)

Query:   234 DDVNKQSTA----SKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSA 289
             +D+N++  A    S++DW  Q +GLN VTFDE+TMP P CSCTG  RQCYKWGNGGWQS+
Sbjct:   169 EDLNRRVPAPGKKSRTDWDSQDVGLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGWQSS 228

Query:   290 CCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHG 349
             CCTT+LS YPLP +PNKRH+R+GGRKMSG+ F++LL+RL+AEG+DLS PVDLKD+WA+HG
Sbjct:   229 CCTTTLSQYPLPQMPNKRHSRMGGRKMSGNVFSRLLSRLSAEGYDLSCPVDLKDYWARHG 288

Query:   350 TNRYITIK 357
             TNRYITIK
Sbjct:   289 TNRYITIK 296

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

UNIPROTKB|Q8GUC3 BBR "Protein Barley B recombinant" [Hordeum vulgare (taxid:4513)]

 Score = 393 (143.4 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
 Identities = 77/170 (45%), Positives = 107/170 (62%)

Query:   189 PKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNK-QSTASKSDW 247
             P ++  +      P   KR+     KV   KP + K  +D   G+D   K ++  S+   
Sbjct:   185 PPLVEDHSVVGSKPPVKKRQQGRQPKVP--KPKKPK--KDATPGEDGAPKARAPRSRGPL 240

Query:   248 KGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKR 307
             K   + +N + FD S +P P CSCTG  +QCY+WG GGWQSACCTTS+S YPLP    +R
Sbjct:   241 KPVEMVINGIDFDISRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRR 300

Query:   308 HARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
              AR+ GRKMS  AF K+L +LA EG++L++P+DLK  WAKHGTN+++TI+
Sbjct:   301 GARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 350

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2823945 BPC2 "basic pentacysteine 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 66/139 (47%), Positives = 94/139 (67%)

Query:   219 KPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQC 278
             KP + K     +  +++ N   T  K   K   L +N V+ D S +P P C+CTG  +QC
Sbjct:   143 KPRKPKDENSNNNNNNNTNV--TRVKPAKKSVDLVINGVSMDISGLPVPICTCTGAPQQC 200

Query:   279 YKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHP 338
             Y+WG GGWQSACCTT++SM+PLP    +R AR+ GRKMS  AF K+L +LA++G +  +P
Sbjct:   201 YRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNP 260

Query:   339 VDLKDHWAKHGTNRYITIK 357
             +DLK HWA+HGTN+++TI+
Sbjct:   261 IDLKSHWARHGTNKFVTIR 279

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;IPI

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

TAIR|locus:2045842 BPC1 "basic pentacysteine1" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 64/134 (47%), Positives = 92/134 (68%)

Query:   224 KSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGN 283
             K  ++ D  +++V +Q    K   K   L +N V+ D S +P P C+CTG  +QCY+WG 
Sbjct:   150 KPKEERDVTNNNVQQQQQRVKPVKKSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGC 209

Query:   284 GGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKD 343
             GGWQSACCTT++S+YPLP    +R AR+ GRKMS  AF K+L +L+ EG+   + +DLK 
Sbjct:   210 GGWQSACCTTNISVYPLPMSTKRRGARISGRKMSQGAFKKVLEKLSTEGYSFGNAIDLKS 269

Query:   344 HWAKHGTNRYITIK 357
             HWA+HGTN+++TI+
Sbjct:   270 HWARHGTNKFVTIR 283


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      357       340   0.00095  116 3  11 23  0.43    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  250 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.68u 0.11s 31.79t   Elapsed:  00:00:02
  Total cpu time:  31.68u 0.11s 31.79t   Elapsed:  00:00:02
  Start:  Sat May 11 09:55:44 2013   End:  Sat May 11 09:55:46 2013

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5VSA8	BBRD_ORYSJ	No assigned EC number	0.5360	0.8935	0.9637	yes	no
Q8L999	BPC6_ARATH	No assigned EC number	0.6892	0.9047	0.9444	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_V0621 hypothetical protein (335 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
pfam06217	301	pfam06217, GAGA_bind, GAGA binding protein-like fa	1e-132

>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family

 Score =  380 bits (977), Expect = e-132
 Identities = 168/341 (49%), Positives = 199/341 (58%), Gaps = 46/341 (13%)

Query: 23  MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 82
           MDD GH  N R+    ++ AQ      +     Q+M+ +AERDA  +ERNLA SEKKAA 
Sbjct: 1   MDDDGHL-NIRNWGYYFEPAQAPSFKSNLG--LQLMSSIAERDAKPRERNLALSEKKAAY 57

Query: 83  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHH 142
           AERDMAFLQRD  IAERNNA++ERDN  A+LQ  ENSL       PPGC I  G K +HH
Sbjct: 58  AERDMAFLQRDAWIAERNNALMERDNKFAALQPVENSL-------PPGCGILPGTKGIHH 110

Query: 143 PQQHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPR------RYKRAKEPKVLSPNK 196
            Q   H          +REMH  +  P+S    EA + +        K  K PK   P K
Sbjct: 111 LQML-HHPQLGDNPYGTREMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKK 169

Query: 197 KTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQ 256
           K + S R VK    D                               SK DWK Q L +N 
Sbjct: 170 KGSVSNRSVKMPGIDPR-----------------------------SKPDWKSQDLVING 200

Query: 257 VTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKM 316
           V+ D S MP P CSCTG  RQCYKWGNGGWQSACCTT++SMYPLP    +R AR+ GRKM
Sbjct: 201 VSMDISGMPVPVCSCTGAPRQCYKWGNGGWQSACCTTTISMYPLPMSTKRRGARIAGRKM 260

Query: 317 SGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
           SG AF KLL RLAAEG+DLS+P+DLKDHWAKHGTN+++TI+
Sbjct: 261 SGGAFKKLLERLAAEGYDLSNPIDLKDHWAKHGTNKFVTIR 301

This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA. It seems likely that the this domain mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
PF06217	301	GAGA_bind: GAGA binding protein-like family; Inter	100.0
PF06217	301	GAGA_bind: GAGA binding protein-like family; Inter	99.86
COG4372	499	Uncharacterized protein conserved in bacteria with	96.71
COG4372	499	Uncharacterized protein conserved in bacteria with	95.17
PF04094	828	DUF390: Protein of unknown function (DUF390); Inte	95.11
PF04094	828	DUF390: Protein of unknown function (DUF390); Inte	94.45
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	85.53
PRK12704	520	phosphodiesterase; Provisional	85.23
PRK12704	520	phosphodiesterase; Provisional	85.15
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	82.95

>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []

Probab=100.00  E-value=1.4e-119  Score=860.26  Aligned_cols=300  Identities=60%  Similarity=0.942  Sum_probs=253.6

Q ss_pred             ccCCCcccCCccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368           23 MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNA  102 (357)
Q Consensus        23 mdd~g~~engr~k~d~yk~~~~~w~m~~~~~~~~~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~A  102 (357)
                      |||+|++|  ||+. ||+-.  .++..|  ..++||++|.|||+||.||+.|++|+++|+++||+|++|||+||+|||+|
T Consensus         1 MDddg~~~--R~wg-~ye~~--~s~K~h--LGLqlMs~maERDaai~er~~al~ekk~a~aeRDma~~qRD~aiaern~a   73 (301)
T PF06217_consen    1 MDDDGSLE--RNWG-YYEPQ--NSMKGH--LGLQLMSIMAERDAAIRERNLALSEKKAAFAERDMAYLQRDAAIAERNNA   73 (301)
T ss_pred             CCCccccc--cCcc-ccccc--cccccc--ccceeeccccccCcccccccchhccccccccchhhhhhhhhhhhccchhh
Confidence            99999999  9999 99932  444443  36789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCCCCCccccCccCCCCCcccccccccchhhhh-hccccCCCCCCCCCCCcCcCCcc
Q 018368          103 ILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAY-SREMHTGDALPVSPGASEAAKPR  181 (357)
Q Consensus       103 I~eRD~aiaaLq~reNsmng~~~~cpp~~g~krg~K~~hH~~~h~~~~~hisea~~-~~~~~~~~asPis~~~~e~~k~K  181 (357)
                      |+|||++|++|+|++++++   ..||++||+.++.+++||++++  +++++.+..| ++|+++.++.||+.++++.++++
T Consensus        74 i~ERd~a~a~l~~~~~~~n---~~~p~~~~~~~~tk~~~~~q~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  148 (301)
T PF06217_consen   74 IMERDNAIAALQPRNNNGN---HHCPPGCGILPGTKHIHHMQQH--HHPQLQPPPYSTREMHNIDAPPISTAPPESKKSK  148 (301)
T ss_pred             cccchhhhhhccccCCCcc---ccCCCCCcccCCCccCCCcccc--cccccCCCCCCccccccccccccccCCcccccCC
Confidence            9999999999999999877   5689999999999999987663  2367788888 79999999999988766666665


Q ss_pred             cccccCCCCCCCCCCcCCCCcccccccccccccccccCCCcccccccCCCCCCcccccccccccccCCcccccceeeecC
Q 018368          182 RYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDE  261 (357)
Q Consensus       182 R~Kr~KesK~~~~~kK~kK~~ek~kk~geDlNr~l~~~k~EWk~~QDl~~G~n~v~~~~~r~~~~~~~~~~~~n~~~~d~  261 (357)
                      +.|+.+..+..+.++ .    ++.++.++++++.          ++ .. +.     + ++.+.+||++||+||+|+||+
T Consensus       149 ~~k~~~~~~~~k~~k-~----~k~kk~~~~~~~~----------~~-~~-~~-----~-~~~k~~~k~~dl~in~i~~D~  205 (301)
T PF06217_consen  149 PPKKRKRPKSPKSPK-P----KKPKKKPSVPNRN----------VN-PP-GS-----D-QRSKPEKKNQDLVINGINFDE  205 (301)
T ss_pred             CCCCCCCCCCCCCCC-C----CCCCCCCCCchhh----------cc-cc-cc-----c-cccccccccccccccceeecc
Confidence            555444333222111 1    1233333333221          00 00 11     0 456899999999999999999


Q ss_pred             CCCCCCcccccCCCccceeccCCcccccccccccccccCCCCCCCCCccccccccchhHHHHHHHHHhhcccCCCCCccc
Q 018368          262 STMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDL  341 (357)
Q Consensus       262 s~~p~p~csctg~~~~cy~wg~ggwqs~cctt~~s~yplp~~~~~r~~r~~grkms~~af~kll~~l~~eg~~~s~p~dl  341 (357)
                      |+||+|||||||+|||||||||||||||||||+||||||||+||||||||||||||+|||+|||+|||+||||||+||||
T Consensus       206 s~mP~PvCSCTG~pqqCYrWG~GGWQSaCCTT~iSmYPLPm~~nkRgaRi~GRKMS~gAF~KlL~rLAaEGydls~PiDL  285 (301)
T PF06217_consen  206 STMPIPVCSCTGVPQQCYRWGNGGWQSACCTTTISMYPLPMSPNKRGARIGGRKMSGGAFKKLLERLAAEGYDLSNPIDL  285 (301)
T ss_pred             CCCCCcccccCCCCccccccCCCccccccccccccccccCCCCCCCccccccccccHHHHHHHHHHHHhcccccCCccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCcceeecC
Q 018368          342 KDHWAKHGTNRYITIK  357 (357)
Q Consensus       342 k~~wa~hgtn~~~ti~  357 (357)
                      |+||||||||||||||
T Consensus       286 K~hWAKHGTNryvTIk  301 (301)
T PF06217_consen  286 KDHWAKHGTNRYVTIK  301 (301)
T ss_pred             HHHHHhcCCcceEecC
Confidence            9999999999999998

It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.

>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []

Probab=99.86  E-value=1e-22  Score=195.87  Aligned_cols=208  Identities=25%  Similarity=0.259  Sum_probs=148.3

Q ss_pred             cccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Q 018368           38 QYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE---RDNAIASLQ  114 (357)
Q Consensus        38 ~yk~~~~~w~m~~~~~~~~~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e---RD~aiaaLq  114 (357)
                      .+|+-.+.=+|.   .|-|++++++||+.||.|++.|++|||+|++|||.||+|||.||+|||+||+.   +++.++   
T Consensus        19 s~K~hLGLqlMs---~maERDaai~er~~al~ekk~a~aeRDma~~qRD~aiaern~ai~ERd~a~a~l~~~~~~~n---   92 (301)
T PF06217_consen   19 SMKGHLGLQLMS---IMAERDAAIRERNLALSEKKAAFAERDMAYLQRDAAIAERNNAIMERDNAIAALQPRNNNGN---   92 (301)
T ss_pred             cccccccceeec---cccccCcccccccchhccccccccchhhhhhhhhhhhccchhhcccchhhhhhccccCCCcc---
Confidence            467666643444   55689999999999999999999999999999999999999999999999999   777655   


Q ss_pred             hhhccCCCCCCCCCCCCccccCccCCCCCc-ccccccccchhhhhhccccCCCCCCCCCCCcCcCCccc---ccccCCCC
Q 018368          115 YRENSLGGNMSSCPPGCQISRGVKHMHHPQ-QHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRR---YKRAKEPK  190 (357)
Q Consensus       115 ~reNsmng~~~~cpp~~g~krg~K~~hH~~-~h~~~~~hisea~~~~~~~~~~asPis~~~~e~~k~KR---~Kr~KesK  190 (357)
                        .+.    +++|....++++.++.+++++ ++.++...+.+.....+.   ++..+.++..+.+++|+   .|.+|..+
T Consensus        93 --~~~----p~~~~~~~~tk~~~~~q~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~k~~~~~~~~k~~k  163 (301)
T PF06217_consen   93 --HHC----PPGCGILPGTKHIHHMQQHHHPQLQPPPYSTREMHNIDAP---PISTAPPESKKSKPPKKRKRPKSPKSPK  163 (301)
T ss_pred             --ccC----CCCCcccCCCccCCCcccccccccCCCCCCcccccccccc---ccccCCcccccCCCCCCCCCCCCCCCCC
Confidence              222    345678888998887666332 222221111121111222   44444444444455444   44455444


Q ss_pred             CCCCCCcCCCCcccccccccccccccccCCCcccccccCCCCCCcccccc-------------cccccccCCccccccee
Q 018368          191 VLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQS-------------TASKSDWKGQVLGLNQV  257 (357)
Q Consensus       191 ~~~~~kK~kK~~ek~kk~geDlNr~l~~~k~EWk~~QDl~~G~n~v~~~~-------------~r~~~~~~~~~~~~n~~  257 (357)
                      +.++.+++++..++++..+.+.     ..+.+||+ |||  ++|+|+|++             .++...|....+.-.+.
T Consensus       164 ~~k~kk~~~~~~~~~~~~~~~~-----~~k~~~k~-~dl--~in~i~~D~s~mP~PvCSCTG~pqqCYrWG~GGWQSaCC  235 (301)
T PF06217_consen  164 PKKPKKKPSVPNRNVNPPGSDQ-----RSKPEKKN-QDL--VINGINFDESTMPIPVCSCTGVPQQCYRWGNGGWQSACC  235 (301)
T ss_pred             CCCCCCCCCCchhhcccccccc-----cccccccc-ccc--cccceeeccCCCCCcccccCCCCccccccCCCccccccc
Confidence            4444444455556677666552     37899999 888  799999998             67888999999999999


Q ss_pred             eecCCCCCCCc
Q 018368          258 TFDESTMPPPA  268 (357)
Q Consensus       258 ~~d~s~~p~p~  268 (357)
                      +-.+|..|.|+
T Consensus       236 TT~iSmYPLPm  246 (301)
T PF06217_consen  236 TTTISMYPLPM  246 (301)
T ss_pred             cccccccccCC
Confidence            99999999997

It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.71  E-value=0.008  Score=61.69  Aligned_cols=56  Identities=27%  Similarity=0.307  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368           57 IMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIAS  112 (357)
Q Consensus        57 ~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aiaa  112 (357)
                      -..-++-|..|++.|++.++.|.+|.+++|.+|.+||+-|..+|.+|++||+.|..
T Consensus       201 ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~  256 (499)
T COG4372         201 EAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRE  256 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            34556667778899999999999999999999999999888888888888887763

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.17  E-value=0.11  Score=53.54  Aligned_cols=57  Identities=26%  Similarity=0.346  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368           55 KQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIA  111 (357)
Q Consensus        55 ~~~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aia  111 (357)
                      -....++.-|+..+.-|..|...++.+|.+||.-|.++|.+|+.|++.|.+|+.-+.
T Consensus       206 a~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq  262 (499)
T COG4372         206 ATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQ  262 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            345577778888888888888888888888888888888888888888877765544

>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice

Probab=95.11  E-value=0.076  Score=57.93  Aligned_cols=43  Identities=33%  Similarity=0.436  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368           64 RDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILER  106 (357)
Q Consensus        64 Rd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eR  106 (357)
                      |+.++.+|+.-|+..+++.++++.++..|+.|++|||.++.++
T Consensus       535 Re~a~a~Re~TLAahEaa~AE~E~aLRLREeA~aER~~~~~~a  577 (828)
T PF04094_consen  535 RERAAAQREATLAAHEAAAAEEESALRLREEALAERDRALNRA  577 (828)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444444445555555555544443

They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.

>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice

Probab=94.45  E-value=0.15  Score=55.73  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368           78 KKAAIAERDMAFLQRDTAIAERNNAILERDNAIA  111 (357)
Q Consensus        78 Rd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aia  111 (357)
                      |+.-++-.+.+.++++.+|..|+.|++|||.+++
T Consensus       542 Re~TLAahEaa~AE~E~aLRLREeA~aER~~~~~  575 (828)
T PF04094_consen  542 REATLAAHEAAAAEEESALRLREEALAERDRALN  575 (828)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334445555566666666666666654

They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=85.53  E-value=5.3  Score=41.95  Aligned_cols=23  Identities=35%  Similarity=0.416  Sum_probs=16.4

Q ss_pred             CccccccccchhHHHHHHHHHhh
Q 018368          308 HARVGGRKMSGSAFNKLLTRLAA  330 (357)
Q Consensus       308 ~~r~~grkms~~af~kll~~l~~  330 (357)
                      .+|-|-|.+|...|-+.|..|..
T Consensus       422 a~rpgar~e~~~~~~~rl~~le~  444 (514)
T TIGR03319       422 AARPGARRESLENYIKRLEKLEE  444 (514)
T ss_pred             CCCCCCcccCHHHHHHHHHHHHH
Confidence            34667777888888887777754

>PRK12704 phosphodiesterase; Provisional

Probab=85.23  E-value=5.7  Score=41.81  Aligned_cols=21  Identities=29%  Similarity=0.419  Sum_probs=14.8

Q ss_pred             cccccccchhHHHHHHHHHhh
Q 018368          310 RVGGRKMSGSAFNKLLTRLAA  330 (357)
Q Consensus       310 r~~grkms~~af~kll~~l~~  330 (357)
                      |.|-|..|-..|-+.|.+|-.
T Consensus       430 Rpgar~~~~e~~i~rl~~le~  450 (520)
T PRK12704        430 RPGARRETLENYIKRLEKLEE  450 (520)
T ss_pred             CCCCccccHHHHHHHHHHHHH
Confidence            456666788888888777743

>PRK12704 phosphodiesterase; Provisional

Probab=85.15  E-value=5.9  Score=41.70  Aligned_cols=38  Identities=11%  Similarity=0.202  Sum_probs=14.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368           68 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE  105 (357)
Q Consensus        68 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e  105 (357)
                      |.+|+..|.+|+..|.+|...|.+|+..|.+|...|.+
T Consensus        84 L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~  121 (520)
T PRK12704         84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQ  121 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334333333333333333333333333333

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=82.95  E-value=8.2  Score=40.59  Aligned_cols=34  Identities=6%  Similarity=0.202  Sum_probs=12.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368           68 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNN  101 (357)
Q Consensus        68 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~  101 (357)
                      |.+|+..|.+|+..|.+|+..+.+|+..|.+|..
T Consensus        78 L~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~  111 (514)
T TIGR03319        78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEK  111 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	90.11
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	87.13

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=90.11  E-value=0.73  Score=36.32  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=18.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368           68 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE  105 (357)
Q Consensus        68 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e  105 (357)
                      |.|-..++.+|++.|.+||.-|.+.+..|.|+|..|.+
T Consensus        21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~   58 (72)
T 3nmd_A           21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQM   58 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444555555555555555555555554

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=87.13  E-value=1.5  Score=34.46  Aligned_cols=46  Identities=24%  Similarity=0.259  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368           58 MTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAI  103 (357)
Q Consensus        58 ~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI  103 (357)
                      |--+.|=+.+|.+|++.|.+||.-|.+.+..|.++|.-|.+=...+
T Consensus        18 mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL   63 (72)
T 3nmd_A           18 RGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL   63 (72)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3346666667777777777777777777777777777776654444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00