Citrus Sinensis ID: 018376

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
MVGDGHVEKRSKDKKKKKKQKRGGGKKKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQISNCDCALYPYPWQLLYDFLGLLASVLSNSPDFII
cccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccccEEEcccccccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHcccEEEEEEEEEEEEccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHcccccccc
cccccccEEccccHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHcccccccEEEEEccccccccccccHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHcccEEEcEEEEEEEEcccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHccccEcccccccccccccccHHHHcccccccccccccccccEc
mvgdghvekrskdkkkkkkqkrgggkkkmtAEQSLAFNSVTEWVYLdqshssssseddfgvhQILNRAVDNNVVFElhshsnfsdgylspsklverahcngvkvlaltdhdtmsgiPEAIETARRFGmkiipgveISTIFCqrgseseepvHILAYysscgpskyEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIagkgvapgRLHVARAMVEAGHVENLKQAFARYLydggpaystgsepLAEVAVQLIHRTGglavlahpwalknpAAIIRKLKDVGlhglevyrsdgklvdvNFLEKIDNFLLLLCLRQIsncdcalypypwQLLYDFLGLLASvlsnspdfii
mvgdghvekrskdkkkkkkqkrgggkkkmtaeqsLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVlaltdhdtmsgIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVyrsdgklvdVNFLEKIDNFLLLLCLRQISNCDCALYPYPWQLLYDFLGLLASVLSNSPDFII
MVGDGHVEkrskdkkkkkkqkrgggkkkMTAEQSLAFNSVTEWVYLDQshsssssEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIlklnklklplkWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQISNCDCALYPYPWQLLYDFLGLLASVLSNSPDFII
************************************FNSVTEWVYL************FGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQISNCDCALYPYPWQLLYDFLGLLASVL********
**************************************SVT********************************VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQISNCDCALYPYPWQLLYDFLGLLASVLSNSPDFII
******************************AEQSLAFNSVTEWVYL************FGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQISNCDCALYPYPWQLLYDFLGLLASVLSNSPDFII
*********************************SLAFNSVTEWVYLD***********FGVH*****AVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQISNCDCALYPYPWQLLYDFLGLLASVLSNSPDFII
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MVGDGHVEKRSKDKKKKKKQKRGGGKKKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQISNCDCALYPYPWQLLYDFLGLLASVLSNSPDFII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query357 2.2.26 [Sep-21-2011]
P44176274 Protein TrpH OS=Haemophil yes no 0.588 0.766 0.373 7e-28
O54453293 Protein TrpH OS=Salmonell yes no 0.540 0.658 0.381 3e-26
P77766293 Protein TrpH OS=Escherich N/A no 0.540 0.658 0.376 2e-23
Q8EQU6 1428 DNA polymerase III PolC-t no no 0.221 0.055 0.358 2e-06
Q895K2 1427 DNA polymerase III PolC-t yes no 0.168 0.042 0.451 4e-06
Q6A780 1134 Error-prone DNA polymeras no no 0.271 0.085 0.368 5e-06
O50399 1098 Error-prone DNA polymeras yes no 0.268 0.087 0.366 5e-06
Q7TWL9 1091 Error-prone DNA polymeras yes no 0.268 0.087 0.366 5e-06
Q73U92 1093 Error-prone DNA polymeras N/A no 0.294 0.096 0.351 6e-06
Q8RA32 1401 DNA polymerase III PolC-t no no 0.168 0.042 0.403 2e-05
>sp|P44176|TRPH_HAEIN Protein TrpH OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trpH PE=3 SV=1 Back     alignment and function desciption
 Score =  125 bits (313), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 116/225 (51%), Gaps = 15/225 (6%)

Query: 75  FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
           ++LH HS  SDG LSP++LV RA+  GV VLAL DHDT++GI EA   A+  G+++I GV
Sbjct: 5   YDLHCHSTASDGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 135 EISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLK 194
           EIST +  RG      +HI+         K   L      +R+ R +   D   KL K  
Sbjct: 65  EISTNWEGRG------IHIVGLNFDKTHPKMTALLQSQKALREKRAVEIGD---KLEKAG 115

Query: 195 LPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAE 254
           +P  ++    +A   V   R H AR +V+ G V N  QAF RYL  G  A+         
Sbjct: 116 IPNAYDGAKALADGEVT--RAHYARYLVQIGKVSNDGQAFKRYLGQGKSAFVKAEWADIP 173

Query: 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEV 295
            A++ IH  GG+A++AHP         +RKL    K  G  G+E+
Sbjct: 174 TAIETIHAAGGIAIIAHPLRYNMTGKWVRKLIVDFKAWGGDGMEM 218

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
>sp|O54453|TRPH_SALTY Protein TrpH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=trpH PE=3 SV=3 Back     alignment and function description
>sp|P77766|TRPH_ECOLI Protein TrpH OS=Escherichia coli (strain K12) GN=trpH PE=3 SV=1 Back     alignment and function description
>sp|Q8EQU6|DPO3_OCEIH DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=polC PE=3 SV=1 Back     alignment and function description
>sp|Q895K2|DPO3_CLOTE DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) GN=polC PE=3 SV=1 Back     alignment and function description
>sp|Q6A780|DNAE2_PROAC Error-prone DNA polymerase OS=Propionibacterium acnes (strain KPA171202 / DSM 16379) GN=dnaE2 PE=3 SV=1 Back     alignment and function description
>sp|O50399|DNAE2_MYCTU Error-prone DNA polymerase OS=Mycobacterium tuberculosis GN=dnaE2 PE=2 SV=4 Back     alignment and function description
>sp|Q7TWL9|DNAE2_MYCBO Error-prone DNA polymerase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=dnaE2 PE=3 SV=2 Back     alignment and function description
>sp|Q73U92|DNAE2_MYCPA Error-prone DNA polymerase OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=dnaE2 PE=3 SV=1 Back     alignment and function description
>sp|Q8RA32|DPO3_THETN DNA polymerase III PolC-type OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=polC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
449438183443 PREDICTED: protein TrpH-like [Cucumis sa 0.801 0.645 0.745 1e-118
224059026408 predicted protein [Populus trichocarpa] 0.761 0.666 0.777 1e-113
297836026434 PHP domain-containing protein [Arabidops 0.812 0.668 0.696 1e-112
356524846 458 PREDICTED: protein trpH-like [Glycine ma 0.784 0.611 0.737 1e-110
18397349434 Polymerase/histidinol phosphatase-like p 0.817 0.672 0.673 1e-109
15450377433 At2g13860/F13J11.19 [Arabidopsis thalian 0.817 0.674 0.673 1e-109
356512073455 PREDICTED: protein trpH-like [Glycine ma 0.764 0.6 0.735 1e-106
326497631426 predicted protein [Hordeum vulgare subsp 0.806 0.676 0.602 2e-97
357113647432 PREDICTED: protein trpH-like [Brachypodi 0.806 0.666 0.605 6e-97
218192239429 hypothetical protein OsI_10344 [Oryza sa 0.843 0.701 0.589 1e-95
>gi|449438183|ref|XP_004136869.1| PREDICTED: protein TrpH-like [Cucumis sativus] gi|449478899|ref|XP_004155448.1| PREDICTED: protein TrpH-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/295 (74%), Positives = 248/295 (84%), Gaps = 9/295 (3%)

Query: 29  MTAEQSLAFNSVTEWVYLDQSHSSSSSE-----DDFGVHQILNRAVDNNVVFELHSHSNF 83
           MT+EQ  AF  VTEW YLDQS+S +SS      DDFGV + + +     VVFELHSHS  
Sbjct: 31  MTSEQIAAFKYVTEWAYLDQSNSLASSAAASVVDDFGVQKTVGKG-GEKVVFELHSHSKC 89

Query: 84  SDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR 143
           SDG+L+PSKLVERAH NGVKVLALTDHDTMSGIPEA+E ARRFG+KIIPGVEISTIF   
Sbjct: 90  SDGFLTPSKLVERAHGNGVKVLALTDHDTMSGIPEAVEAARRFGIKIIPGVEISTIFSNG 149

Query: 144 G-SESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHV 202
           G SESEEPVHILAYYSSCGP+K E+LE FL NIR+GRFLRAK+M+ KLN+LKLPLKW+HV
Sbjct: 150 GDSESEEPVHILAYYSSCGPAKIEKLEKFLENIREGRFLRAKNMVSKLNELKLPLKWDHV 209

Query: 203 AKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 262
           AKI GKGVAPGRLHVARA+VEAG+VENLKQAF+RYL+DGGPAYSTGSEP A  A+QLIH 
Sbjct: 210 AKITGKGVAPGRLHVARALVEAGYVENLKQAFSRYLFDGGPAYSTGSEPCAAEAIQLIHD 269

Query: 263 TGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLL 317
           TGG+AVLAHPWALKNP A+IR+LKD GLHGLEVYRSDG+L   + L   DN+ LL
Sbjct: 270 TGGMAVLAHPWALKNPVAVIRRLKDAGLHGLEVYRSDGRLAAYSDL--ADNYGLL 322

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224059026|ref|XP_002299681.1| predicted protein [Populus trichocarpa] gi|222846939|gb|EEE84486.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297836026|ref|XP_002885895.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331735|gb|EFH62154.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356524846|ref|XP_003531039.1| PREDICTED: protein trpH-like [Glycine max] Back     alignment and taxonomy information
>gi|18397349|ref|NP_565360.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana] gi|20197611|gb|AAD15431.2| expressed protein [Arabidopsis thaliana] gi|20197796|gb|AAM15252.1| expressed protein [Arabidopsis thaliana] gi|330251170|gb|AEC06264.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15450377|gb|AAK96482.1| At2g13860/F13J11.19 [Arabidopsis thaliana] gi|20466107|gb|AAM19975.1| At2g13860/F13J11.19 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356512073|ref|XP_003524745.1| PREDICTED: protein trpH-like [Glycine max] Back     alignment and taxonomy information
>gi|326497631|dbj|BAK05905.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|357113647|ref|XP_003558613.1| PREDICTED: protein trpH-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|218192239|gb|EEC74666.1| hypothetical protein OsI_10344 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
TAIR|locus:2043738434 AT2G13840 [Arabidopsis thalian 0.798 0.656 0.630 1.8e-94
UNIPROTKB|Q3Z644287 DET1610 "PHP domain N-terminal 0.585 0.728 0.366 5.2e-33
TIGR_CMR|DET_1610287 DET_1610 "PHP domain N-termina 0.585 0.728 0.366 5.2e-33
UNIPROTKB|Q3A9Z4278 CHY_2227 "PHP domain protein" 0.596 0.766 0.348 1.8e-30
TIGR_CMR|CHY_2227278 CHY_2227 "PHP domain protein" 0.596 0.766 0.348 1.8e-30
UNIPROTKB|Q8ECV6286 trpH "PHP family metal-depende 0.599 0.748 0.360 3.5e-27
TIGR_CMR|SO_3017286 SO_3017 "TrpH family protein" 0.599 0.748 0.360 3.5e-27
UNIPROTKB|Q74D71288 GSU1448 "Metal-dependent phosp 0.649 0.805 0.329 2.6e-24
TIGR_CMR|GSU_1448288 GSU_1448 "PHP domain protein" 0.649 0.805 0.329 2.6e-24
UNIPROTKB|Q60BV5277 MCA0359 "PHP domain protein" [ 0.621 0.801 0.322 1.1e-23
TAIR|locus:2043738 AT2G13840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 184/292 (63%), Positives = 225/292 (77%)

Query:    29 MTAEQSLAFNSVTEWVYLDQXXXXXXXEDDFGVHQILNRA---VDNNVVFELHSHSNFSD 85
             MT EQS AF S+T+W+ L          DDF V+  +N         VVFELHSHSN SD
Sbjct:    22 MTTEQSEAFKSITDWLILGSSPSLSSSSDDFAVN--INSGSLRCGEKVVFELHSHSNRSD 79

Query:    86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS 145
             G+LSPSK+VERA+ NGVKVL+LTDHDTM+G+PEA+E  RRFG+KIIPG+EIST+F  R S
Sbjct:    80 GFLSPSKVVERAYNNGVKVLSLTDHDTMAGVPEAVEAGRRFGIKIIPGIEISTLFGLRDS 139

Query:   146 ESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKI 205
              SEEPVHILAYY + GP+ Y+ELE+FL  IRDGRF+R ++M+           WEHV +I
Sbjct:   140 GSEEPVHILAYYGTSGPALYDELEDFLVKIRDGRFVRGREMVLKLNKLKIPLKWEHVTRI 199

Query:   206 AGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGG 265
             AGK VAPGR+HVARA++EAG+VENL+QAF +YL+DGGPAY+TG+EP+AE AV+LI +TGG
Sbjct:   200 AGKDVAPGRMHVARALLEAGYVENLRQAFTKYLHDGGPAYATGTEPMAEEAVKLICKTGG 259

Query:   266 LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLL 317
             +AVLAHPWALKN   IIR+LKD GLHG+EVYRSDGKL +V F E  D + LL
Sbjct:   260 VAVLAHPWALKNHVGIIRRLKDAGLHGVEVYRSDGKL-EV-FSELADTYNLL 309
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003824 "catalytic activity" evidence=IEA
GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006260 "DNA replication" evidence=IEA;ISS
UNIPROTKB|Q3Z644 DET1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1610 DET_1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9Z4 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2227 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q8ECV6 trpH "PHP family metal-dependent phosphoesterases TrpH" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3017 SO_3017 "TrpH family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q74D71 GSU1448 "Metal-dependent phosphoesterase, PHP family" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1448 GSU_1448 "PHP domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q60BV5 MCA0359 "PHP domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038415001
SubName- Full=Chromosome chr12 scaffold_93, whole genome shotgun sequence; (406 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002540001
RecName- Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4.6.1.12; (183 aa)
•       0.582
GSVIVG00035363001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (238 aa)
•       0.575
GSVIVG00037855001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (279 aa)
•       0.497
GSVIVG00002220001
SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (378 aa)
•       0.474
GSVIVG00034771001
RecName- Full=6,7-dimethyl-8-ribityllumazine synthase; EC=2.5.1.9; (185 aa)
•       0.434
GSVIVG00003012001
RecName- Full=D-tyrosyl-tRNA(Tyr) deacylase; EC=3.1.-.-;; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D [...] (153 aa)
•       0.416
GSVIVG00007090001
SubName- Full=Chromosome undetermined scaffold_183, whole genome shotgun sequence; (493 aa)
•       0.412
GSVIVG00032094001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (195 aa)
•       0.406

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
COG0613258 COG0613, COG0613, Predicted metal-dependent phosph 5e-40
cd07438155 cd07438, PHP_HisPPase_AMP, Polymerase and Histidin 9e-33
smart0048167 smart00481, POLIIIAc, DNA polymerase alpha chain l 2e-18
cd07432129 cd07432, PHP_HisPPase, Polymerase and Histidinol P 1e-16
COG0587 1139 COG0587, DnaE, DNA polymerase III, alpha subunit [ 1e-14
pfam02811174 pfam02811, PHP, PHP domain 6e-14
PRK05672 1046 PRK05672, dnaE2, error-prone DNA polymerase; Valid 3e-13
PRK00448 1437 PRK00448, polC, DNA polymerase III PolC; Validated 1e-12
cd07438155 cd07438, PHP_HisPPase_AMP, Polymerase and Histidin 2e-12
cd07435268 cd07435, PHP_PolIIIA_POLC, Polymerase and Histidin 8e-12
cd0730988 cd07309, PHP, Polymerase and Histidinol Phosphatas 3e-11
cd07431179 cd07431, PHP_PolIIIA, Polymerase and Histidinol Ph 6e-11
COG2176 1444 COG2176, PolC, DNA polymerase III, alpha subunit ( 8e-11
PRK06361212 PRK06361, PRK06361, hypothetical protein; Provisio 3e-10
TIGR01405 1213 TIGR01405, polC_Gram_pos, DNA polymerase III, alph 1e-09
COG1387237 COG1387, HIS2, Histidinol phosphatase and related 4e-08
cd07434260 cd07434, PHP_PolIIIA_DnaE2, Polymerase and Histidi 1e-07
cd12112235 cd12112, PHP_HisPPase_Chlorobi_like, Polymerase an 2e-07
cd12113283 cd12113, PHP_PolIIIA_DnaE3, Polymerase and Histidi 1e-06
PRK07374 1170 PRK07374, dnaE, DNA polymerase III subunit alpha; 5e-06
cd12111226 cd12111, PHP_HisPPase_Thermotoga_like, Polymerase 1e-05
PRK09532 874 PRK09532, PRK09532, DNA polymerase III subunit alp 2e-05
TIGR00594 1022 TIGR00594, polc, DNA-directed DNA polymerase III ( 5e-05
PRK06826 1151 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed 5e-05
PRK05673 1135 PRK05673, dnaE, DNA polymerase III subunit alpha; 1e-04
cd07433277 cd07433, PHP_PolIIIA_DnaE1, Polymerase and Histidi 5e-04
PRK07135 973 PRK07135, dnaE, DNA polymerase III DnaE; Validated 7e-04
>gnl|CDD|223686 COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only] Back     alignment and domain information 
 Score =  141 bits (358), Expect = 5e-40
 Identities = 81/228 (35%), Positives = 110/228 (48%), Gaps = 12/228 (5%)

Query: 75  FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIE-TARRFGMKIIPG 133
            +LH H+  SDG L+P ++VERA   GV VLA+TDHDT+ G+ EA      R G+ +IPG
Sbjct: 4   ADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPG 63

Query: 134 VEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKL 193
           +EIST      +     +HIL           E L   LA  +  R  R +++  +L K 
Sbjct: 64  IEIST------TWGGHIIHILGLGI---DITDEPLVEGLARQQLYREERLEEIKERLGKA 114

Query: 194 KLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 253
            +P  +E   K+AG G    R H+AR  VE G+    +  F +YL  G P Y       +
Sbjct: 115 IIPHPFEGARKLAGLGAIT-RAHIARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADS 173

Query: 254 EVAVQLIHRTGGLAVLAHPWALKNPA-AIIRKLKDVGLHGLEVYRSDG 300
           E  V  IH  GG AVLAHP         ++    D G  G+EV     
Sbjct: 174 EAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAI 221

Length = 258
>gnl|CDD|213993 cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound Back     alignment and domain information
>gnl|CDD|197753 smart00481, POLIIIAc, DNA polymerase alpha chain like domain Back     alignment and domain information
>gnl|CDD|213987 cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase Back     alignment and domain information
>gnl|CDD|223660 COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|217238 pfam02811, PHP, PHP domain Back     alignment and domain information
>gnl|CDD|235553 PRK05672, dnaE2, error-prone DNA polymerase; Validated Back     alignment and domain information
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated Back     alignment and domain information
>gnl|CDD|213993 cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound Back     alignment and domain information
>gnl|CDD|213990 cd07435, PHP_PolIIIA_POLC, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at PolC gene Back     alignment and domain information
>gnl|CDD|213985 cd07309, PHP, Polymerase and Histidinol Phosphatase domain Back     alignment and domain information
>gnl|CDD|213986 cd07431, PHP_PolIIIA, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III Back     alignment and domain information
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|180543 PRK06361, PRK06361, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>gnl|CDD|224305 COG1387, HIS2, Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|213989 cd07434, PHP_PolIIIA_DnaE2, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at DnaE2 gene Back     alignment and domain information
>gnl|CDD|213996 cd12112, PHP_HisPPase_Chlorobi_like, Polymerase and Histidinol Phosphatase domain of Chlorobi like Back     alignment and domain information
>gnl|CDD|213997 cd12113, PHP_PolIIIA_DnaE3, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE3 Back     alignment and domain information
>gnl|CDD|168927 PRK07374, dnaE, DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|213995 cd12111, PHP_HisPPase_Thermotoga_like, Polymerase and Histidinol Phosphatase domain of Thermotoga like Back     alignment and domain information
>gnl|CDD|181933 PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>gnl|CDD|233039 TIGR00594, polc, DNA-directed DNA polymerase III (polc) Back     alignment and domain information
>gnl|CDD|235868 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>gnl|CDD|235554 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|213988 cd07433, PHP_PolIIIA_DnaE1, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE1 Back     alignment and domain information
>gnl|CDD|235944 PRK07135, dnaE, DNA polymerase III DnaE; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 357
COG0613258 Predicted metal-dependent phosphoesterases (PHP fa 100.0
PRK09248246 putative hydrolase; Validated 99.81
PRK00448 1437 polC DNA polymerase III PolC; Validated 99.78
PF02811175 PHP: PHP domain; InterPro: IPR004013 The PHP (Poly 99.73
smart0048167 POLIIIAc DNA polymerase alpha chain like domain. D 99.72
PRK08392215 hypothetical protein; Provisional 99.71
TIGR00375 374 conserved hypothetical protein TIGR00375. The memb 99.65
PRK09532 874 DNA polymerase III subunit alpha; Reviewed 99.64
PRK07328269 histidinol-phosphatase; Provisional 99.64
PRK05672 1046 dnaE2 error-prone DNA polymerase; Validated 99.63
PRK07135 973 dnaE DNA polymerase III DnaE; Validated 99.57
PRK05673 1135 dnaE DNA polymerase III subunit alpha; Validated 99.54
PRK00912237 ribonuclease P protein component 3; Provisional 99.52
PRK06361212 hypothetical protein; Provisional 99.52
PRK07945335 hypothetical protein; Provisional 99.51
TIGR01856253 hisJ_fam histidinol phosphate phosphatase HisJ fam 99.5
PRK08123270 histidinol-phosphatase; Reviewed 99.5
COG1387237 HIS2 Histidinol phosphatase and related hydrolases 99.48
TIGR00594 1022 polc DNA-directed DNA polymerase III (polc). This 99.47
PRK07279 1034 dnaE DNA polymerase III DnaE; Reviewed 99.47
PRK05898 971 dnaE DNA polymerase III DnaE; Validated 99.43
PRK06826 1151 dnaE DNA polymerase III DnaE; Reviewed 99.42
PRK08609570 hypothetical protein; Provisional 99.42
PRK07374 1170 dnaE DNA polymerase III subunit alpha; Validated 99.41
PRK06920 1107 dnaE DNA polymerase III DnaE; Reviewed 99.4
PRK05588255 histidinol-phosphatase; Provisional 99.4
COG0587 1139 DnaE DNA polymerase III, alpha subunit [DNA replic 99.39
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 99.39
PRK07329246 hypothetical protein; Provisional 99.23
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 99.07
PRK06740331 histidinol-phosphatase; Validated 99.06
COG1379 403 PHP family phosphoesterase with a Zn ribbon [Gener 98.97
COG4464254 CapC Capsular polysaccharide biosynthesis protein 97.84
PF12228 592 DUF3604: Protein of unknown function (DUF3604); In 93.38
COG0084256 TatD Mg-dependent DNase [DNA replication, recombin 93.01
PF1326356 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3 90.97
TIGR00010252 hydrolase, TatD family. Several genomes have multi 89.34
PF01026255 TatD_DNase: TatD related DNase The Pfam entry find 83.11
PRK10812265 putative DNAse; Provisional 82.54
PRK13125244 trpA tryptophan synthase subunit alpha; Provisiona 80.32
PRK11449258 putative deoxyribonuclease YjjV; Provisional 80.31
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-38  Score=298.59  Aligned_cols=250  Identities=35%  Similarity=0.473  Sum_probs=223.8

Q ss_pred             ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH-HHHHhcCCeEEEEEEEEeeeccCCCCCCCc
Q 018376           72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI-ETARRFGMKIIPGVEISTIFCQRGSESEEP  150 (357)
Q Consensus        72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~-~~a~~~gi~vi~GiEis~~~~~~~~~~g~~  150 (357)
                      ||++||||||++|||.++|.+++++|++.|++++|||||||+.|+.++. ......++.+|||+|+++.+      .+..
T Consensus         1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~------~~~~   74 (258)
T COG0613           1 WMKADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTW------GGHI   74 (258)
T ss_pred             CcceeeeEecccCCCCCCHHHHHHHHHHcCCCEEEECCcccccccHHHHHHhhcCCCceeeccEEeeccc------CCeE
Confidence            6899999999999999999999999999999999999999999999997 55556889999999999998      6889


Q ss_pred             EEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccccH
Q 018376          151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL  230 (357)
Q Consensus       151 vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~hia~aLv~~g~~~~~  230 (357)
                      +|+++++++..   ...+.+++.+.+..|.+|.+++.+++....++-.++.+...++.+ .+.+.|++..+++.++..+.
T Consensus        75 ih~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~  150 (258)
T COG0613          75 IHILGLGIDIT---DEPLVEGLARQQLYREERLEEIKERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTR  150 (258)
T ss_pred             EEEEeeccccc---chhhhhhhhhccccHHHHHHHHHHhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccch
Confidence            99999997642   345788899999999999999999999999999999888877644 46799999999999999999


Q ss_pred             HHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCCCCCh-HHHHHHHHHcCCcEEEeecCCCcHHH-HHHH
Q 018376          231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSDGKLVD-VNFL  308 (357)
Q Consensus       231 ~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~~-~~li~~l~~~GlDGIEv~~~~~~~~~-~~~~  308 (357)
                      ...|++|+..++++|+++.+.+.++.|..|+.+||++|+|||.++... ..++..+++.|.||+|+++.+..... ..+.
T Consensus       151 ~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~  230 (258)
T COG0613         151 QGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLA  230 (258)
T ss_pred             HHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEEEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHH
Confidence            999999999999999999999999999999999999999999998764 67899999999999999999875443 5688


Q ss_pred             HHHHhcCCceeecccccCCCCCCCCChh
Q 018376          309 EKIDNFLLLLCLRQISNCDCALYPYPWQ  336 (357)
Q Consensus       309 ~lA~~~~Ll~t~~~~~GSD~h~~~~~~~  336 (357)
                      .++++++++.|.    |||+| .+..|.
T Consensus       231 ~~~k~~~~l~s~----gs~fh-~~~~~~  253 (258)
T COG0613         231 LLAKEFGLLASV----GSDFH-TPGDWI  253 (258)
T ss_pred             HHHHHhhhhhcc----ccccc-CCCccc
Confidence            999999999986    99999 443443

>PRK09248 putative hydrolase; Validated Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain Back     alignment and domain information
>smart00481 POLIIIAc DNA polymerase alpha chain like domain Back     alignment and domain information
>PRK08392 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00375 conserved hypothetical protein TIGR00375 Back     alignment and domain information
>PRK09532 DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>PRK07328 histidinol-phosphatase; Provisional Back     alignment and domain information
>PRK05672 dnaE2 error-prone DNA polymerase; Validated Back     alignment and domain information
>PRK07135 dnaE DNA polymerase III DnaE; Validated Back     alignment and domain information
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>PRK00912 ribonuclease P protein component 3; Provisional Back     alignment and domain information
>PRK06361 hypothetical protein; Provisional Back     alignment and domain information
>PRK07945 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family Back     alignment and domain information
>PRK08123 histidinol-phosphatase; Reviewed Back     alignment and domain information
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00594 polc DNA-directed DNA polymerase III (polc) Back     alignment and domain information
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK05898 dnaE DNA polymerase III DnaE; Validated Back     alignment and domain information
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK08609 hypothetical protein; Provisional Back     alignment and domain information
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK05588 histidinol-phosphatase; Provisional Back     alignment and domain information
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>PRK07329 hypothetical protein; Provisional Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06740 histidinol-phosphatase; Validated Back     alignment and domain information
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only] Back     alignment and domain information
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria Back     alignment and domain information
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B Back     alignment and domain information
>TIGR00010 hydrolase, TatD family Back     alignment and domain information
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition Back     alignment and domain information
>PRK10812 putative DNAse; Provisional Back     alignment and domain information
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>PRK11449 putative deoxyribonuclease YjjV; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
2yb1_A292 Structure Of An Amidohydrolase From Chromobacterium 7e-17
3e0f_A301 Crystal Structure Of A Putative Metal-Dependent Pho 8e-17
3f2b_A 1041 Dna Polymerase Polc From Geobacillus Kaustophilus C 8e-06
>pdb|2YB1|A Chain A, Structure Of An Amidohydrolase From Chromobacterium Violaceum (Efi Target Efi-500202) With Bound Mn, Amp And Phosphate. Length = 292 Back     alignment and structure 
Iteration: 1

 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 13/236 (5%)
Query: 75  FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
            +LH HS  SDG L+P+++++RA      +LALTDHD   G+ EA   A R G+  + GV
Sbjct: 4   IDLHFHSRTSDGALTPTEVIDRAAARAPALLALTDHDCTGGLAEAAAAAARRGIPFLNGV 63
Query: 135 EISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXX 194
           E+S       S     VHI+       P++   L   L +IR+GR  RA+ M        
Sbjct: 64  EVSV------SWGRHTVHIVGL--GIDPAE-PALAAGLKSIREGRLERARQMGASLEAAG 114
Query: 195 XXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAE 254
               ++   +         R H AR +V++G V++++  F +YL  G P Y +      E
Sbjct: 115 IAGCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKYLTPGKPGYVSHQWASLE 174
Query: 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEVYRSDGKLVDVN 306
            AV  I   GG+AV+AHP        +I +L    +  G  G+EV      L D++
Sbjct: 175 DAVGWIVGAGGMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGSHSLDDMH 230
>pdb|3E0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent Phosphoesterase (Bad_1165) From Bifidobacterium Adolescentis Atcc 15703 At 2.40 A Resolution Length = 301 Back     alignment and structure
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex With Dna, Dgtp, Mg And Zn Length = 1041 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
2yb1_A292 Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v 6e-89
3o0f_A301 Putative metal-dependent phosphoesterase; structur 7e-87
2anu_A255 Hypothetical protein TM0559; predicted metal-depen 9e-14
3e38_A343 Two-domain protein containing predicted PHP-like d 2e-13
2hnh_A 910 DNA polymerase III alpha subunit; DNA replication, 1e-07
3f2b_A 1041 DNA-directed DNA polymerase III alpha chain; DNA p 4e-07
1m65_A245 Hypothetical protein YCDX; structural genomics, be 1e-06
2hpi_A 1220 DNA polymerase III alpha subunit; POL-beta-like nu 3e-06
3b0x_A575 DNA polymerase beta family (X family); structural 7e-05
2yxo_A267 Histidinol phosphatase; metal-dependent, hydrolase 5e-04
2w9m_A578 Polymerase X; SAXS, DNA repair, DNA polymerase, DN 8e-04
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A Length = 292 Back     alignment and structure
 Score =  268 bits (687), Expect = 6e-89
 Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 13/239 (5%)

Query: 77  LHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEI 136
           LH HS  SDG L+P+++++RA      +LALTDHD   G+ EA   A R G+  + GVE+
Sbjct: 6   LHFHSRTSDGALTPTEVIDRAAARAPALLALTDHDCTGGLAEAAAAAARRGIPFLNGVEV 65

Query: 137 STIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLP 196
           S  + +        VHI+             L   L +IR+GR  RA+ M   L    + 
Sbjct: 66  SVSWGRHT------VHIVGLGIDP---AEPALAAGLKSIREGRLERARQMGASLEAAGIA 116

Query: 197 LKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVA 256
             ++   +         R H AR +V++G V++++  F +YL  G P Y +      E A
Sbjct: 117 GCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKYLTPGKPGYVSHQWASLEDA 176

Query: 257 VQLIHRTGGLAVLAHPWALKNPA----AIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKI 311
           V  I   GG+AV+AHP            +I   +  G  G+EV      L D++     
Sbjct: 177 VGWIVGAGGMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGSHSLDDMHKFALH 235
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Length = 301 Back     alignment and structure
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1 Length = 255 Back     alignment and structure
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482} Length = 343 Back     alignment and structure
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* Length = 910 Back     alignment and structure
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* Length = 1041 Back     alignment and structure
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A Length = 245 Back     alignment and structure
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Length = 1220 Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Length = 575 Back     alignment and structure
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A Length = 267 Back     alignment and structure
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} Length = 578 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
3o0f_A301 Putative metal-dependent phosphoesterase; structur 100.0
2yb1_A292 Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v 100.0
3e38_A 343 Two-domain protein containing predicted PHP-like d 99.95
2yxo_A267 Histidinol phosphatase; metal-dependent, hydrolase 99.89
1m65_A245 Hypothetical protein YCDX; structural genomics, be 99.89
2anu_A255 Hypothetical protein TM0559; predicted metal-depen 99.88
2hnh_A 910 DNA polymerase III alpha subunit; DNA replication, 99.75
2w9m_A578 Polymerase X; SAXS, DNA repair, DNA polymerase, DN 99.73
2wje_A247 CPS4B, tyrosine-protein phosphatase CPSB; capsule 99.72
3qy7_A262 Tyrosine-protein phosphatase YWQE; TIM barrel, pol 99.71
2hpi_A 1220 DNA polymerase III alpha subunit; POL-beta-like nu 99.67
3b0x_A575 DNA polymerase beta family (X family); structural 99.67
3f2b_A 1041 DNA-directed DNA polymerase III alpha chain; DNA p 99.55
3dcp_A283 Histidinol-phosphatase; HISK, histidine biosynthes 99.45
1v77_A212 PH1877P, hypothetical protein PH1877; RNAse P prot 98.89
2y1h_A272 Putative deoxyribonuclease tatdn3; hydrolase; 2.50 93.08
1zzm_A259 Putative deoxyribonuclease YJJV; hydrolaze, zinc, 89.57
3rcm_A287 TATD family hydrolase; HET: CIT; 2.05A {Pseudomona 88.29
3ipw_A325 Hydrolase TATD family protein; niaid, ssgcid, seat 86.6
1xwy_A264 DNAse TATD, deoxyribonuclease TATD; TIM barrael, z 86.57
3gg7_A254 Uncharacterized metalloprotein; structural genomic 85.63
1yix_A265 Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW 85.19
2xio_A301 Putative deoxyribonuclease tatdn1; hydrolase; 1.19 84.84
2gzx_A265 Putative TATD related DNAse; deoxyribonuclease, NE 84.84
4gbu_A 400 NADPH dehydrogenase 1; alpha/beta barrel, enenone 80.25
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Back     alignment and structure
Probab=100.00  E-value=2.6e-58  Score=442.94  Aligned_cols=256  Identities=28%  Similarity=0.409  Sum_probs=233.6

Q ss_pred             CCceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccCCCCCCC
Q 018376           70 DNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEE  149 (357)
Q Consensus        70 ~~~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~g~  149 (357)
                      .++|++||||||.||||.++|++++++|++.|++.|||||||++.|+.++.+++++.||++|+|+||++.+      .+.
T Consensus        10 ~m~~~~DLH~Hs~~SDG~~~~~elv~~A~~~Gl~~iaiTDH~~~~g~~~~~~~~~~~gi~~i~GvEis~~~------~~~   83 (301)
T 3o0f_A           10 PPAQGWDIHCHTVFSDGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGTEITAVD------EDV   83 (301)
T ss_dssp             CCSSSEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCCEEEEEEEEEEE------TTE
T ss_pred             cccceEEeeECCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCCccccHHHHHHHHHhcCCEEEEEEEEEEEe------CCc
Confidence            46689999999999999999999999999999999999999999999999999999999999999999998      577


Q ss_pred             cEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCC--CCCChHHHHHHHHHcCcc
Q 018376          150 PVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKG--VAPGRLHVARAMVEAGHV  227 (357)
Q Consensus       150 ~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~--~~~~~~hia~aLv~~g~~  227 (357)
                      ++|||||++|.   ..+.|.++++.+++.|.+|+++|+++|++. ++++||++.++++++  ..+||+|||++|+++||+
T Consensus        84 ~vHiL~~~~d~---~~~~l~~~l~~~~~~R~~R~~~i~~~L~~~-~~i~~e~v~~~a~~~~~~~igR~HiA~~Lv~~G~~  159 (301)
T 3o0f_A           84 SVHMLAFQYDP---SNEHISSMFANTRAARLRRTKRMVERLSQD-FPITWDDVLAQVKEGERTTIGRPHIADALVAAGVY  159 (301)
T ss_dssp             EEEEEEESCCT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCCHHHHHTTCTTGGGSCCCHHHHHHHHHHTTSC
T ss_pred             eEEEEEEcCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCC
Confidence            89999999874   357899999999999999999999999999 999999998877532  469999999999999999


Q ss_pred             ccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCCCC-----ChHHHHHHHHHcCCcEEEeecCCCcH
Q 018376          228 ENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK-----NPAAIIRKLKDVGLHGLEVYRSDGKL  302 (357)
Q Consensus       228 ~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~-----~~~~li~~l~~~GlDGIEv~~~~~~~  302 (357)
                      .+..++|++||+.++|+|||..+++++|+|++|+++||++|||||+++.     ...+++.+|+++|+|||||+|++++.
T Consensus       160 ~~~~~aF~~~l~~g~~~yV~~~~~~~~eaI~~I~~aGGvaVLAHP~r~~~~r~~~~~~~l~~l~~~GldgIEv~~~~~~~  239 (301)
T 3o0f_A          160 ETRSDAFADAVSAKSKYYIPTPSPSTHEVIAAVKGAGGVVVAAHAGDPQRNRRLLSDEQLDAMIADGLDGLEVWHRGNPP  239 (301)
T ss_dssp             SSHHHHHTTTTSTTSTTCCCCCCCBHHHHHHHHHHTTCEEEECSTTCTTTCSSCCCHHHHHHHHHHTCCEEEEESTTSCH
T ss_pred             CCHHHHHHHHHcCCCccccCccCCCHHHHHHHHHHCCCEEEecChhhhccccccCcHHHHHHHHHCCCCEEEEeCCCCCH
Confidence            9999999999999999999999999999999999999999999997653     34678999999999999999998865


Q ss_pred             HH-HHHHHHHHhcCCceeecccccCCCCCCCCChhhhhh
Q 018376          303 VD-VNFLEKIDNFLLLLCLRQISNCDCALYPYPWQLLYD  340 (357)
Q Consensus       303 ~~-~~~~~lA~~~~Ll~t~~~~~GSD~h~~~~~~~~l~~  340 (357)
                      .+ ..+.++|+++||+.|+    |||+|. +.+|..|+.
T Consensus       240 ~~~~~~~~lA~~~gL~~tg----GSD~Hg-~~~~~~lG~  273 (301)
T 3o0f_A          240 EQRERLLTIAARHDLLVTG----GSDWHG-KGKPNGLGE  273 (301)
T ss_dssp             HHHHHHHHHHHHHTCEEEE----CCCBCG-GGSSCCTTS
T ss_pred             HHHHHHHHHHHHcCCceEE----EcCCCC-CCCCCcCCC
Confidence            54 5799999999999997    999994 444555653
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A Back     alignment and structure
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A Back     alignment and structure
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A Back     alignment and structure
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1 Back     alignment and structure
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* Back     alignment and structure
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} Back     alignment and structure
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A Back     alignment and structure
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A Back     alignment and structure
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* Back     alignment and structure
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str} Back     alignment and structure
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A* Back     alignment and structure
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} Back     alignment and structure
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 Back     alignment and structure
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} Back     alignment and structure
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} Back     alignment and structure
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 Back     alignment and structure
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 Back     alignment and structure
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 Back     alignment and structure
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} Back     alignment and structure
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Back     alignment and structure
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 357
d2anua1229 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {The 1e-12
d1m65a_244 c.6.3.1 (A:) Hypothetical protein YcdX {Escherichi 2e-10
>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]} Length = 229 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.3 bits (155), Expect = 1e-12
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 76  ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 135
           + H H+N SDG+L   ++V+    +GV V+++TDH       E  +      +  I   +
Sbjct: 7   DFHVHTNMSDGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGE-PLGAITEDK 65

Query: 136 ISTIFCQRGSESEEPVHILAYYSSCG 161
                 +   E +            G
Sbjct: 66  FQDYLKRLWREQKRAWEEYGMILIPG 91
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]} Length = 244 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
d2anua1229 Hypothetical protein TM0559 {Thermotoga maritima [ 99.89
d1m65a_244 Hypothetical protein YcdX {Escherichia coli [TaxId 99.76
d1v77a_202 Ribonuclease P protein component 3, Rnp3 {Pyrococc 87.55
d1zzma1259 Putative deoxyribonuclease YjjV {Escherichia coli 83.89
d1m65a_244 Hypothetical protein YcdX {Escherichia coli [TaxId 80.46
>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2.2e-23  Score=186.65  Aligned_cols=156  Identities=24%  Similarity=0.296  Sum_probs=117.9

Q ss_pred             CceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH---------------------------HHH
Q 018376           71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI---------------------------ETA  123 (357)
Q Consensus        71 ~~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~---------------------------~~a  123 (357)
                      .|+++|||+||.||||..||++++++|++.|+++||||||+++.+...+.                           ...
T Consensus         2 ~W~~aDlH~HT~~SDg~~t~~e~~~~A~~~Gld~iaiTDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d2anua1           2 EWLLCDFHVHTNMSDGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGEPLGAITEDKFQDYLKRLWREQKRAW   81 (229)
T ss_dssp             EEEEEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHTTCCCCSCCSTTHHHHHHHHHHHHHHHH
T ss_pred             CceeeecccCcCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCccchhhhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999876654332                           233


Q ss_pred             HhcCCeEEEEEEEEeeeccCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHH
Q 018376          124 RRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVA  203 (357)
Q Consensus       124 ~~~gi~vi~GiEis~~~~~~~~~~g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~  203 (357)
                      ...++.+++|+|....        ....++++++...    +                                      
T Consensus        82 ~~~~~~~~~g~e~~~~--------~~~~~~~~~~~~~----~--------------------------------------  111 (229)
T d2anua1          82 EEYGMILIPGVEITNN--------TDLYHIVAVDVKE----Y--------------------------------------  111 (229)
T ss_dssp             HHHSCEEEEEEEEEET--------TTTEEEEEESCCS----C--------------------------------------
T ss_pred             hhcCeeeeccceeccc--------ccceeEEecCCcc----c--------------------------------------
Confidence            4578999999999874        3456777775321    0                                      


Q ss_pred             HHhCCCCCCChHHHHHHHHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCCCCChH----
Q 018376          204 KIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA----  279 (357)
Q Consensus       204 ~~a~~~~~~~~~hia~aLv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~~~----  279 (357)
                                                                . ....+..++++.+++.||++|+|||++.....    
T Consensus       112 ------------------------------------------~-~~~~~~~~~~~~~~~~g~~~i~aHp~~~~~~~~~~~  148 (229)
T d2anua1         112 ------------------------------------------V-DPSLPVEEIVEKLKEQNALVIAAHPDRKKQDEEHLS  148 (229)
T ss_dssp             ------------------------------------------C-CTTSCHHHHHHHHHHTTCEEEECCCCTTC-----CC
T ss_pred             ------------------------------------------c-CcccchHHHHHHHHhCCCeEEcccccccccchhhhh
Confidence                                                      1 11235689999999999999999998654211    


Q ss_pred             ---HHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcCCceeecccccCCCC
Q 018376          280 ---AIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQISNCDCA  329 (357)
Q Consensus       280 ---~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~Ll~t~~~~~GSD~h  329 (357)
                         ....+....+++|+|++++..      +.++|++++|..++    |||+|
T Consensus       149 ~~~~~~~~~~~~~~~~iE~~~~~~------~~~~~~~~~l~~v~----~SDaH  191 (229)
T d2anua1         149 WYLWANMERFKDTFDAWEIANRDD------LFNSVGVKKYRYVA----NSDFH  191 (229)
T ss_dssp             CHHHHSTTTTTTTCSEEEEEETTE------ECHHHHHTTCCEEE----ECCBC
T ss_pred             hhhHhHHHHHhccCcEEEeccHHH------HHHHHHHcCCCEEe----eCCCC
Confidence               011112345689999998643      46789999999886    99999
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]} Back     information, alignment and structure