Citrus Sinensis ID: 018417

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQGENTTLSNFLVP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHHHHHHHccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHEEHEHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccEEEEHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHcccccHEEEEEHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLlrpkphleglVIATCASGNLGNLLLIIVPAicheqgspfgnrdvcssVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAqaaepeevpkevnkdFDANAQTQllrgttddqeDVSVLVAStksssdpecqiivpqashlqtrKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRnliigdsaplrVIQDSIEILGYVFVSAQFYCFVGwlatssfsycrdgtipcitlilggnliqgenttlsnflvp
Flexible Loop (DISEMBL)
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAaepeevpkevnKDFDANAQTQllrgttddqedVSVLVAstksssdpecQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILggnliqgenttlsnflvp
Low Complexity Region (SEG)
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSleflhqlleellapptlaaIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQGENTTLSNFLVP
Disordered region (IsUnstruct)
**FWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSV*************FFIWSYSYQLIKQSSVRYKA****************************************************QIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQGENTTLS*****
Disordered Region (DISOPRED)
*GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQ*****************************************************************************KRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQGENTT***FLVP
Disordered Region (DISEMBL)
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRY**************EVNKDFDANAQTQLLRGTTDDQEDVSVLVA********ECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQGENTTLSNFLVP
Disordered Region (DISPRO)
*GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSV********************************************************************RKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQG***********
Transmembrane Helix (TMHMM)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQGENTTLSNFLVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
P38355	427	Uncharacterized transport	yes	no	0.435	0.362	0.271	1e-05
O14197	452	Uncharacterized transport	yes	no	0.426	0.336	0.225	0.0007

>sp|P38355|YB8B_YEAST Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 14  IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW 73
           ++QV++I++ G   A+    LL   +++ ++ +   +FTP L+F+ LAK++++ +I    
Sbjct: 18  VLQVVIIALAGFWSASS--GLLPKQSQKIISLLNVDLFTPCLIFSKLAKSLSMAKIFEIA 75

Query: 74  FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL-------LLIIVPA 126
            +P+   +T  I  I G I+ ++L         V+A    GN  +L       L   +P 
Sbjct: 76  IIPIFFGLTTGISFISGKIMSRILDLDKDETNFVVANSVFGNSNSLPVSLTLSLAYTLPN 135

Query: 127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY-QLIKQS 171
           +  +Q  P  NRD  +S G+ Y      +G    WS+ Y +L+K S
Sbjct: 136 LTWDQ-IPNDNRDNVASRGILYLLIFQQIGQMLRWSWGYNKLMKWS 180

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O14197|YDQ4_SCHPO Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 15  VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF 74
           ++V++I++ G ++A +    L  DA++ ++ +    FTP L+F  +   + L+ +I    
Sbjct: 24  LEVIVIALGGYVLAKK--GFLPRDAQKVISSLNVYFFTPCLVFEKVGNGLNLKMLIDLSL 81

Query: 75  MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGS- 133
           +PV   +      ++ +++ KL R  P       A     N  +L L +V ++       
Sbjct: 82  LPVFYVIISAASILISFLLAKLFRLTPRQRNFATACITFQNSNSLPLALVSSLATTVKDL 141

Query: 134 -----PFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168
                P    D  +S G+ Y      LG    WSY Y+++
Sbjct: 142 LWDKIPDDTPDKVASRGIMYLLIFSQLGQALRWSYGYRIL 181

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
255561457	406	auxin:hydrogen symporter, putative [Rici	0.853	0.748	0.634	1e-116
224081467	397	predicted protein [Populus trichocarpa]	0.828	0.743	0.623	1e-113
356496547	419	PREDICTED: uncharacterized transporter Y	0.884	0.751	0.570	1e-108
356538399	419	PREDICTED: uncharacterized transporter Y	0.884	0.751	0.564	1e-108
359480743	421	PREDICTED: uncharacterized transporter Y	0.890	0.752	0.561	1e-107
357484233	420	Transporter, putative [Medicago truncatu	0.884	0.75	0.574	1e-107
449495132	412	PREDICTED: uncharacterized transporter Y	0.870	0.752	0.568	1e-106
297797791	395	predicted protein [Arabidopsis lyrata su	0.834	0.751	0.573	1e-105
15239215	395	auxin efflux carrier family protein [Ara	0.834	0.751	0.564	1e-104
356496545	407	PREDICTED: uncharacterized transporter Y	0.853	0.746	0.560	1e-104

>gi|255561457|ref|XP_002521739.1| auxin:hydrogen symporter, putative [Ricinus communis] gi|223539130|gb|EEF40726.1| auxin:hydrogen symporter, putative [Ricinus communis]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/345 (63%), Positives = 262/345 (75%), Gaps = 41/345 (11%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MGFWT FEVASMPI+QVLLIS LGA MAT Y NLLT+DAR+SLNK+VF VFTPSLMFASL
Sbjct: 1   MGFWTLFEVASMPIIQVLLISGLGAFMATNYCNLLTSDARKSLNKIVFVVFTPSLMFASL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           A+TVTL++IISWWFMPVNV +TFLIGGILGW++VK+L+PKP+LEGLVIATC+SGNLGNLL
Sbjct: 61  AQTVTLQDIISWWFMPVNVGLTFLIGGILGWVLVKVLKPKPYLEGLVIATCSSGNLGNLL 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LI+VPAIC+E GSPFG+R+ C S+GLSYASFSMA+GGF+IW+Y+Y LI+ S+ + +A+ Q
Sbjct: 121 LIVVPAICNENGSPFGDRETCKSIGLSYASFSMAIGGFYIWTYTYHLIRTSATKLRAI-Q 179

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240
           A   EE  K  NKD +A  +T LL+G  +DQE V + V S KS  D E Q   P +S   
Sbjct: 180 AE--EEASKAPNKDLEATPETHLLKG--EDQEHVVISVPSIKSVDDQESQ---PASS--- 229

Query: 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIE 300
                 W + +  L Q++EELLAPPT+AAI GF+FGA  +LRNLIIG SAPLRVIQDSI+
Sbjct: 230 ------WSKWIGILRQIMEELLAPPTIAAIFGFLFGATTFLRNLIIGSSAPLRVIQDSIK 283

Query: 301 ILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQG 345
           +LG                        DGTIPCITLILGGNLIQG
Sbjct: 284 LLG------------------------DGTIPCITLILGGNLIQG 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081467|ref|XP_002306421.1| predicted protein [Populus trichocarpa] gi|222855870|gb|EEE93417.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/345 (62%), Positives = 250/345 (72%), Gaps = 50/345 (14%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MGFWT FEVAS+PI+QVLLIS  GALMAT+Y NLL  DAR+SLNK+VF VFTPSLMFASL
Sbjct: 1   MGFWTLFEVASLPIIQVLLISFFGALMATEYLNLLPKDARKSLNKLVFMVFTPSLMFASL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           AKTVTLE+IISWWFMPVN+  TFLIGGILGWI+VK+LRPKP+LEGLVIATC+SGNLGNLL
Sbjct: 61  AKTVTLEDIISWWFMPVNIGFTFLIGGILGWILVKILRPKPYLEGLVIATCSSGNLGNLL 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LIIVPAIC E GSPFG+  +C+SVGLSYASFSMALGGFFIW+Y++ LI+ S+ + KAL  
Sbjct: 121 LIIVPAICTEDGSPFGDSSICTSVGLSYASFSMALGGFFIWTYTFHLIRTSAAKLKALQA 180

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240
             E  + P   N DFDA+ +T LL G   DQE+V++       SS               
Sbjct: 181 VVEASKAP---NNDFDASQETHLLIG--QDQENVAIEHGKGNVSS--------------- 220

Query: 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIE 300
                 W + + FLHQ+LEELL PPT+AAI+GFIFGA  +LRNLIIG  APLRVIQDSI+
Sbjct: 221 ------WTKLIGFLHQILEELLEPPTIAAILGFIFGATTFLRNLIIGSEAPLRVIQDSIK 274

Query: 301 ILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQG 345
           +LG                        DGTIPCITLILGGNL +G
Sbjct: 275 LLG------------------------DGTIPCITLILGGNLTEG 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496547|ref|XP_003517128.1| PREDICTED: uncharacterized transporter YBR287W-like isoform 2 [Glycine max]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/347 (57%), Positives = 258/347 (74%), Gaps = 32/347 (9%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYW-NLLTADARRSLNKMVFTVFTPSLMFAS 59
           MGF    EVAS+P++QVLLIS LGALMATQY+ NLL+ D R++LNK+VF +FTPSL+F+S
Sbjct: 1   MGFLELLEVASLPVIQVLLISALGALMATQYFDNLLSPDIRKALNKIVFLIFTPSLVFSS 60

Query: 60  LAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 119
            AK+V+L+++ISWWFMPVNV +TFLIGGI+GWI+VKLL+P   +EGL+IA C+SGN+GNL
Sbjct: 61  FAKSVSLDDMISWWFMPVNVGLTFLIGGIIGWILVKLLKPNLKVEGLIIAACSSGNMGNL 120

Query: 120 LLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALA 179
            ++I+PAIC E+G PFG RD+C +  LSYASFSMALGG FIW+Y+YQ +K  S+++KAL 
Sbjct: 121 PIVIIPAICDEKGGPFGARDICRNNALSYASFSMALGGIFIWTYTYQTVKSRSLKFKAL- 179

Query: 180 QAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQ-ASH 238
           +AAE  +VP   NKDFDANA+T LL+   +D ED ++ V ++    D E QIIV Q  S+
Sbjct: 180 EAAEIVKVP---NKDFDANAETHLLKD--NDSEDTTIEVPTSTYIGDTENQIIVDQDQSN 234

Query: 239 LQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDS 298
           +  + ES W R +E +  LL EL++PP +A   GF+FGAV WLRNLIIGD+APLRVIQDS
Sbjct: 235 VSKKTESSWHRMVEVMSHLLAELVSPPAIATFFGFLFGAVAWLRNLIIGDNAPLRVIQDS 294

Query: 299 IEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQG 345
           +++LG                        +GTIPCITL+LGGNL QG
Sbjct: 295 LQLLG------------------------NGTIPCITLLLGGNLTQG 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538399|ref|XP_003537691.1| PREDICTED: uncharacterized transporter YBR287W-like [Glycine max]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/347 (56%), Positives = 258/347 (74%), Gaps = 32/347 (9%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYW-NLLTADARRSLNKMVFTVFTPSLMFAS 59
           MGF    EVASMP++QVLLIS LGALMATQ++ N+L+ D R++LNK+VF +FTPSL+F+S
Sbjct: 1   MGFLELLEVASMPVIQVLLISALGALMATQFFDNILSPDIRKALNKIVFVIFTPSLVFSS 60

Query: 60  LAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 119
            AK+V+L+++ISWWFMPVNV +TFLIGGI+GWI+VKLL+P   +EGL+IA C+SGN+GNL
Sbjct: 61  FAKSVSLDDMISWWFMPVNVGLTFLIGGIIGWILVKLLKPNLKVEGLIIAACSSGNMGNL 120

Query: 120 LLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALA 179
            ++I+PAIC E+G PFG RD+C +  LSYASFSMALGG FIW+Y+YQ +K  S+++KAL 
Sbjct: 121 PIVIIPAICDEKGGPFGARDICRNNALSYASFSMALGGIFIWTYTYQTVKSRSLKFKAL- 179

Query: 180 QAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQ-ASH 238
           +AAE  +VP   NKDFDANA+T LL+   +D ED ++ V ++    D E QIIV Q  S+
Sbjct: 180 EAAEIVKVP---NKDFDANAETHLLK--DNDSEDTTIQVPTSTYIGDTENQIIVDQDQSN 234

Query: 239 LQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDS 298
           +  ++ES W R +E +  LL EL++PP +A   GF+FGAV WLRN+IIGD APLRVIQDS
Sbjct: 235 VSKKRESSWHRMVEVMSHLLAELMSPPAIATFFGFLFGAVAWLRNIIIGDDAPLRVIQDS 294

Query: 299 IEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQG 345
           +++LG                        +GTIPCITL+LGGNL QG
Sbjct: 295 LQLLG------------------------NGTIPCITLLLGGNLAQG 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480743|ref|XP_002276744.2| PREDICTED: uncharacterized transporter YBR287W-like [Vitis vinifera] gi|296082565|emb|CBI21570.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/347 (56%), Positives = 247/347 (71%), Gaps = 30/347 (8%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MGFWT FEVASMPI+QVL+I  +GA +AT Y N+L ADAR+S+NK+VF  FTPSLMFA L
Sbjct: 1   MGFWTLFEVASMPILQVLIIGSVGAFLATGYCNILPADARKSVNKIVFVAFTPSLMFAGL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           A+TVTL+++ISWWFMPVN+ +TFL GGILGW+VVK+L+PK HLEGL++ATC+SGNLGNLL
Sbjct: 61  AQTVTLQDMISWWFMPVNIGLTFLFGGILGWLVVKILKPKQHLEGLIMATCSSGNLGNLL 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LI++PAIC E GSPFG+   C + GLSYAS S ALGG FIW+Y+YQLI+ S  +Y A+  
Sbjct: 121 LIVIPAICEEDGSPFGDHASCGASGLSYASLSTALGGIFIWTYTYQLIRSSVTKYYAIQD 180

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQ--ASH 238
             +  +VP   NK+ DAN +T LL+G  D +   S    S  +  D E Q+IV Q  A  
Sbjct: 181 VKDVIKVP---NKELDANKETHLLKG-EDQEHGTSSFPPSNSTGEDVEKQVIVSQESAGS 236

Query: 239 LQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDS 298
           L+  KESFW R      Q+++ELL+PPTL AI+GF+FGAV WL+N + GD APLRV+QDS
Sbjct: 237 LEDGKESFWARVAGIASQMMKELLSPPTLGAILGFVFGAVPWLKNFLTGDEAPLRVVQDS 296

Query: 299 IEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQG 345
           +++L                         +GTIPCITLILGGNL +G
Sbjct: 297 VKLLA------------------------NGTIPCITLILGGNLTRG 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484233|ref|XP_003612404.1| Transporter, putative [Medicago truncatula] gi|355513739|gb|AES95362.1| Transporter, putative [Medicago truncatula]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/348 (57%), Positives = 249/348 (71%), Gaps = 33/348 (9%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWN-LLTADARRSLNKMVFTVFTPSLMFAS 59
           MGF    EVASMP++QVLLIS LGA MATQY+N LL+ D R+SLNK+VF VFTPSL+FAS
Sbjct: 1   MGFLQLLEVASMPVIQVLLISALGAFMATQYFNNLLSPDFRKSLNKVVFIVFTPSLVFAS 60

Query: 60  LAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 119
            AK+V+LE++ISWWFMPVNV +TFLIGGILGWI+VKLLRP   +EGL+IA+C+SGN+GNL
Sbjct: 61  FAKSVSLEDMISWWFMPVNVGLTFLIGGILGWILVKLLRPNLKVEGLIIASCSSGNMGNL 120

Query: 120 LLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALA 179
            ++I+PAIC+E+G PFG RDVC S  LSYASFSMALGG FIW+Y+YQ IK  S+++KAL 
Sbjct: 121 PIVIIPAICNEKGGPFGARDVCHSNALSYASFSMALGGIFIWTYTYQTIKSRSLKFKAL- 179

Query: 180 QAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASH- 238
              E  E+ K  NKD D NA T LL+G   D E+ ++ V+ +    D E QII  Q    
Sbjct: 180 ---EAAEILKAPNKDLDGNADTPLLKG--KDNENTAIEVSPSSYIEDSESQIIDEQDQSI 234

Query: 239 -LQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQD 297
            L+  K+SF+ R +E L  LL EL++PP +A   GF+FGAV WLRNLIIGD+AP  VIQD
Sbjct: 235 VLKKEKQSFFNRMIEVLSHLLAELMSPPAIATFFGFLFGAVAWLRNLIIGDNAPFSVIQD 294

Query: 298 SIEILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQG 345
           ++E+LG                        +GTIPCITL+LGGNL  G
Sbjct: 295 TLELLG------------------------NGTIPCITLLLGGNLTAG 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495132|ref|XP_004159743.1| PREDICTED: uncharacterized transporter YBR287W-like [Cucumis sativus]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/345 (56%), Positives = 246/345 (71%), Gaps = 35/345 (10%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MG  +  EVA MP +QVLLI ++GAL+AT Y NLL A AR SLNK+VFTVFTP LMFA+L
Sbjct: 1   MGLLSLLEVALMPNLQVLLICLVGALLATDYCNLLPAHARTSLNKIVFTVFTPCLMFANL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           AKTVT ++I+SWWFMPVN+ +TFL GGILGWIVVK+L+PKP+LEGLVIA  +SGNLGNLL
Sbjct: 61  AKTVTFQDIVSWWFMPVNIGLTFLFGGILGWIVVKILKPKPYLEGLVIAASSSGNLGNLL 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LIIVPAIC E GSPFG+RD C+S+GLSYASFSMALGGF++W+Y+YQL+K SS+R KAL +
Sbjct: 121 LIIVPAICDEDGSPFGDRDTCTSLGLSYASFSMALGGFYLWTYTYQLVKTSSMRLKAL-E 179

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240
             E EE  K  N   + + Q  LL     +Q  +  +   ++ S D          S  +
Sbjct: 180 VEEAEEQLKAPNHASNGDLQAHLLNKQNGEQAHLLPVSVESQHSVD----------SLEK 229

Query: 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIE 300
               S W ++LEF+H ++EEL+APP+L AIVGFIFGAV WLRNL++GD+AP +VIQDS++
Sbjct: 230 GESPSIWAKTLEFMHSIIEELMAPPSLGAIVGFIFGAVAWLRNLVVGDNAPFKVIQDSVQ 289

Query: 301 ILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQG 345
           +LG                        +GTIPC TLILGGNL+QG
Sbjct: 290 LLG------------------------EGTIPCTTLILGGNLVQG 310

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797791|ref|XP_002866780.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312615|gb|EFH43039.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/349 (57%), Positives = 246/349 (70%), Gaps = 52/349 (14%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MGF    EVASMPIVQVLLISVLGA +AT Y +LL+AD RRS+NK+VF VFTP +MFA+L
Sbjct: 1   MGFLELLEVASMPIVQVLLISVLGAFLATDYCSLLSADTRRSVNKLVFVVFTPCIMFANL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           A+TVTL++IISWWFMP+NV +TFL+GGILGW+VVKLL PKP L GL+IATCASGN+GNL+
Sbjct: 61  AETVTLQDIISWWFMPINVGITFLVGGILGWLVVKLLNPKPQLHGLIIATCASGNMGNLM 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LI+VPAIC E+GSPFGNR VC S+GLSYASFSMALGGF+IW+YSYQL++ S+ +++AL  
Sbjct: 121 LILVPAICDEEGSPFGNRSVCRSIGLSYASFSMALGGFYIWTYSYQLVRSSATQFRALEA 180

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240
           A     + K  NKD D++  T LL+                  + D E Q          
Sbjct: 181 AG----LVKSPNKDIDSDPHTLLLK---------------PHQNQDLEIQ---------G 212

Query: 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIE 300
            +K S      + LHQ+LEEL APPT+ AI+GF+FGA  WLRNLIIG++APLRVIQDS++
Sbjct: 213 KQKVSTGTYIKDLLHQILEELFAPPTIGAILGFVFGATNWLRNLIIGENAPLRVIQDSVK 272

Query: 301 ILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQGENTT 349
           +LG                        DGTIPCITLILGGNLIQG  ++
Sbjct: 273 LLG------------------------DGTIPCITLILGGNLIQGLRSS 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239215|ref|NP_201399.1| auxin efflux carrier family protein [Arabidopsis thaliana] gi|10177113|dbj|BAB10403.1| unnamed protein product [Arabidopsis thaliana] gi|332010751|gb|AED98134.1| auxin efflux carrier family protein [Arabidopsis thaliana]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/349 (56%), Positives = 246/349 (70%), Gaps = 52/349 (14%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MGF    EVASMPIVQVLLISVLGA +AT Y +LL+AD RRS+NK+VF VFTP +MFA+L
Sbjct: 1   MGFLELLEVASMPIVQVLLISVLGAFLATDYCSLLSADTRRSVNKLVFVVFTPCIMFANL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           A+TVTL++IISWWFMP+NV +TFL+GGILGW+VVKLL PKP L GL+IATCASGN+GNL+
Sbjct: 61  AETVTLQDIISWWFMPINVGITFLVGGILGWLVVKLLNPKPQLHGLIIATCASGNMGNLM 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LI+VPAIC E+GSPFGNR VC S+GLSYASFSMALGGF+IW+YSYQL++ S+ +++AL  
Sbjct: 121 LILVPAICDEEGSPFGNRSVCRSIGLSYASFSMALGGFYIWTYSYQLVRSSATQFRALEA 180

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240
           A     + K  NKD D++    LL+                  + D E Q         +
Sbjct: 181 AG----LVKSPNKDIDSDPHALLLK---------------PHQNQDLEIQ------GKQK 215

Query: 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIE 300
               ++ K   + LHQ+LEEL APPT+ AI+GF+FGA  WLRNLIIG++APLRVIQDS++
Sbjct: 216 VSTRTYIK---DLLHQILEELFAPPTIGAILGFVFGATNWLRNLIIGENAPLRVIQDSVK 272

Query: 301 ILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQGENTT 349
           +LG                        +GTIPCITLILGGNLIQG  ++
Sbjct: 273 LLG------------------------EGTIPCITLILGGNLIQGLRSS 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496545|ref|XP_003517127.1| PREDICTED: uncharacterized transporter YBR287W-like isoform 1 [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/346 (56%), Positives = 251/346 (72%), Gaps = 42/346 (12%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYW-NLLTADARRSLNKMVFTVFTPSLMFAS 59
           MGF    EVAS+P++QVLLIS LGALMATQY+ NLL+ D R++LNK+VF +FTPSL+F+S
Sbjct: 1   MGFLELLEVASLPVIQVLLISALGALMATQYFDNLLSPDIRKALNKIVFLIFTPSLVFSS 60

Query: 60  LAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 119
            AK+V+L+++ISWWFMPVNV +TFLIGGI+GWI+VKLL+P   +EGL+IA C+SGN+GNL
Sbjct: 61  FAKSVSLDDMISWWFMPVNVGLTFLIGGIIGWILVKLLKPNLKVEGLIIAACSSGNMGNL 120

Query: 120 LLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALA 179
            ++I+PAIC E+G PFG RD+C +  LSYASFSMALGG FIW+Y+YQ +K  S+++KAL 
Sbjct: 121 PIVIIPAICDEKGGPFGARDICRNNALSYASFSMALGGIFIWTYTYQTVKSRSLKFKAL- 179

Query: 180 QAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHL 239
           +AAE  +VP   NKDFDANA+T LL+   +D ED ++ V ++    D E QI        
Sbjct: 180 EAAEIVKVP---NKDFDANAETHLLKD--NDSEDTTIEVPTSTYIGDTENQI-------- 226

Query: 240 QTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSI 299
               ES W R +E +  LL EL++PP +A   GF+FGAV WLRNLIIGD+APLRVIQDS+
Sbjct: 227 ---TESSWHRMVEVMSHLLAELVSPPAIATFFGFLFGAVAWLRNLIIGDNAPLRVIQDSL 283

Query: 300 EILGYVFVSAQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQG 345
           ++LG                        +GTIPCITL+LGGNL QG
Sbjct: 284 QLLG------------------------NGTIPCITLLLGGNLTQG 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2156847	395	AT5G65980 "AT5G65980" [Arabido	0.564	0.508	0.678	2.1e-86
TAIR|locus:2053908	396	AT2G17500 [Arabidopsis thalian	0.587	0.527	0.588	2e-75
TAIR|locus:2011731	390	AT1G76520 "AT1G76520" [Arabido	0.511	0.466	0.455	1.5e-57
TAIR|locus:2011746	415	AT1G76530 "AT1G76530" [Arabido	0.575	0.493	0.387	8.6e-47
TAIR|locus:2185123	431	AT5G01990 "AT5G01990" [Arabido	0.525	0.433	0.353	7.3e-38
TAIR|locus:2026366	457	AT1G71090 "AT1G71090" [Arabido	0.505	0.393	0.347	4.4e-36
SGD|S000000491	427	YBR287W "Protein of unknown fu	0.435	0.362	0.271	1.3e-06
ASPGD|ASPL0000057212	584	AN0930 [Emericella nidulans (t	0.643	0.392	0.227	5.2e-06
SGD|S000005039	642	YNL095C "Putative protein of u	0.589	0.327	0.242	0.00035
POMBASE|SPAC5D6.04	452	SPAC5D6.04 "auxin family trans	0.457	0.360	0.216	0.00046

TAIR|locus:2156847 AT5G65980 "AT5G65980" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
 Identities = 139/205 (67%), Positives = 171/205 (83%)

Query:     1 MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
             MGF    EVASMPIVQVLLISVLGA +AT Y +LL+AD RRS+NK+VF VFTP +MFA+L
Sbjct:     1 MGFLELLEVASMPIVQVLLISVLGAFLATDYCSLLSADTRRSVNKLVFVVFTPCIMFANL 60

Query:    61 AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
             A+TVTL++IISWWFMP+NV +TFL+GGILGW+VVKLL PKP L GL+IATCASGN+GNL+
Sbjct:    61 AETVTLQDIISWWFMPINVGITFLVGGILGWLVVKLLNPKPQLHGLIIATCASGNMGNLM 120

Query:   121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
             LI+VPAIC E+GSPFGNR VC S+GLSYASFSMALGGF+IW+YSYQL++ S+ +++AL  
Sbjct:   121 LILVPAICDEEGSPFGNRSVCRSIGLSYASFSMALGGFYIWTYSYQLVRSSATQFRALEA 180

Query:   181 AAEPEEVPKEVNKDFDANAQTQLLR 205
             A     + K  NKD D++    LL+
Sbjct:   181 AG----LVKSPNKDIDSDPHALLLK 201

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2053908 AT2G17500 [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
 Identities = 126/214 (58%), Positives = 174/214 (81%)

Query:     1 MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
             MGFW+  EVASMP++QVL +S++GA MA+    L   +AR S+NK+VF +F P+LMFA+L
Sbjct:     1 MGFWSLLEVASMPVIQVLFMSLVGAFMASDRCKLFPVEARNSMNKVVFVLFAPALMFANL 60

Query:    61 AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
             A+TVTLE+IISWWFMPVN+ +TFLIGG+LGW+VVK+L+P P+LEGL++ATC++GN+GNL 
Sbjct:    61 AQTVTLEDIISWWFMPVNMGLTFLIGGLLGWLVVKILKPPPYLEGLIVATCSAGNMGNLP 120

Query:   121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
             +I+VPAIC E  SPFGNR VC +VGLSYASFSMALGGF+IW+Y+++LIK S+++ +A+  
Sbjct:   121 IILVPAICDEDKSPFGNRSVCRTVGLSYASFSMALGGFYIWTYTFRLIKGSAMKVQAIE- 179

Query:   181 AAEPEEVP-KEVNKDFDANAQTQLLRGTTDDQED 213
               E E++  K  N D +A+ +T LL G  +D+E+
Sbjct:   180 --ESEKIAIKSSNSDLEADHKTHLL-GAPEDKEN 210

GO:0009507 "chloroplast" evidence=ISM

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2011731 AT1G76520 "AT1G76520" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 1.5e-57, Sum P(3) = 1.5e-57
 Identities = 87/191 (45%), Positives = 128/191 (67%)

Query:     7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTL 66
             F  +S P+V++LLI+ +G  MA    NLL  DAR+ LN +VF VF+PSL+ + LA +VT 
Sbjct:     8 FITSSKPVVEILLITSVGFYMALDGVNLLGHDARKYLNNIVFYVFSPSLIGSRLADSVTY 67

Query:    67 EEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA 126
             E ++  WFMPVNV +TF+IG +LGWIV+ + +P  HL GL++  CA+GNLGN+ LII+PA
Sbjct:    68 ESLVKMWFMPVNVLLTFIIGSLLGWIVIVITKPPSHLRGLILGCCAAGNLGNMPLIIIPA 127

Query:   127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEE 186
             +C E+G PFG+ + C   G+ Y + SMA+G  +IW+Y Y L++        L+ +  P E
Sbjct:   128 VCKEKGGPFGDPESCQKYGMGYVALSMAMGSIYIWTYVYNLMR-------VLSNS--PVE 178

Query:   187 VPKEVNKDFDA 197
              P  V  ++D+
Sbjct:   179 TPPSVESNYDS 189

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015824 "proline transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2011746 AT1G76530 "AT1G76530" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 84/217 (38%), Positives = 128/217 (58%)

Query:     7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTL 66
             F  +S P+V+ LLI+ +G  +A    NLL  DAR+ LN +VF VF+PSL+ + LA +VT 
Sbjct:     7 FIASSKPVVETLLITSVGFYLALDTVNLLGHDARKHLNNIVFYVFSPSLIGSRLADSVTY 66

Query:    67 EEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA 126
             E ++  WFMPVNV +TF+IG +LGWIV+ + +P   L GL+I+ CASGNLG + LII+PA
Sbjct:    67 ESLVKMWFMPVNVLLTFMIGSLLGWIVIVITKPPSQLRGLIISCCASGNLGTMPLIIIPA 126

Query:   127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ----------LIKQSSVRYK 176
             IC E+G PFG+ + C   G+ Y + SM    FFI  Y +           L+    +   
Sbjct:   127 ICKEKGGPFGDSESCEKYGMGYVTLSMT--AFFISVYKHDTNWYVSGGNGLLMDLYINLM 184

Query:   177 ALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQED 213
              +   +  E     +  ++D + + QL+    +++E+
Sbjct:   185 RVLSNSPVETHTHSIESNYDDSCKVQLISSKEEEKEE 221

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2185123 AT5G01990 "AT5G01990" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 71/201 (35%), Positives = 121/201 (60%)

Query:     8 EVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLE 67
             ++A MPI +V  +  LG LMA++Y N+L    R+ LN +VF++  P L+F+ L + VTL+
Sbjct:    29 KIAVMPIAKVFTMCFLGLLMASKYVNILPPSGRKLLNGLVFSLLLPCLIFSQLGQAVTLQ 88

Query:    68 EIISWWFMPVNVAMTFLIGGILGWIVVKLLRPK-PHLEGLVIATCASGNLGNLLLIIVPA 126
             +++ WWF+PVNV +  + G I+G+IV  ++RP  P+ +  +I     GN+GN+ L+++ A
Sbjct:    89 KMLQWWFIPVNVVLGTISGSIIGFIVASIVRPPYPYFKFTIIQI-GVGNIGNVPLVLLAA 147

Query:   127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI---------KQSSVRYKA 177
             +C +  +PFG+ + CS  G +Y SF   +G   +++Y YQ+          ++ ++  K 
Sbjct:   148 LCRDTSNPFGDSEKCSIDGTAYISFGQWVGAIILYTYVYQMFAPPPEGFDAEEENLALKT 207

Query:   178 LAQAAEPEEVP---KEVNKDF 195
             L   A PE+VP   +   KDF
Sbjct:   208 LPVDAAPEQVPLLTQNFPKDF 228

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2026366 AT1G71090 "AT1G71090" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
 Identities = 64/184 (34%), Positives = 112/184 (60%)

Query:    12 MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIIS 71
             +P+++++ ++V+G L+A     L+     R L+K+VF +F P L+F  L +++TL+ I+ 
Sbjct:    21 VPLLKLICLTVIGLLLAHPKTQLVPRATFRLLSKLVFALFLPCLIFTELGESITLDNIVQ 80

Query:    72 WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQ 131
             WWF+PVNV ++ ++G ++G++VV + RP P      I   A GN GNLLL IV ++CH +
Sbjct:    81 WWFIPVNVLLSAVVGSLIGYLVVLICRPPPEFNRFTIVMTAFGNTGNLLLAIVSSVCHTK 140

Query:   132 GSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ-AAEPEEVPKE 190
              +PFG    C+S G+SY SF+  +    +++  Y +++     Y+ + +   E EE+  E
Sbjct:   141 TNPFGPN--CNSRGVSYVSFAQWVAVILVYTVVYHMMEPPLEYYEVVEEEGVEIEEINVE 198

Query:   191 VNKD 194
              N D
Sbjct:   199 -NHD 201

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

SGD|S000000491 YBR287W "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 141 (54.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 45/166 (27%), Positives = 83/166 (50%)

Query:    14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW 73
             ++QV++I++ G   A+    LL   +++ ++ +   +FTP L+F+ LAK++++ +I    
Sbjct:    18 VLQVVIIALAGFWSASS--GLLPKQSQKIISLLNVDLFTPCLIFSKLAKSLSMAKIFEIA 75

Query:    74 FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL-------LLIIVPA 126
              +P+   +T  I  I G I+ ++L         V+A    GN  +L       L   +P 
Sbjct:    76 IIPIFFGLTTGISFISGKIMSRILDLDKDETNFVVANSVFGNSNSLPVSLTLSLAYTLPN 135

Query:   127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY-QLIKQS 171
             +  +Q  P  NRD  +S G+ Y      +G    WS+ Y +L+K S
Sbjct:   136 LTWDQ-IPNDNRDNVASRGILYLLIFQQIGQMLRWSWGYNKLMKWS 180

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ASPGD|ASPL0000057212 AN0930 [Emericella nidulans (taxid:162425)]

 Score = 136 (52.9 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 56/246 (22%), Positives = 104/246 (42%)

Query:    14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW 73
             +++V+ +S+ G + A     +  ADA++ +  +   +FTP L+F  L   +T E++    
Sbjct:    58 VLEVVCVSLPGYIAARV--GMFDADAQKFVANLNVALFTPCLIFTKLGSQLTAEKLTDLA 115

Query:    74 FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAIC----- 128
              +P+   +   +     ++V +  R K      V A    GN  +L + +V ++      
Sbjct:   116 IIPLIFIVQTAVSYSCAFVVSRCFRLKKRPSNFVAAMAVFGNSNSLPISLVISLSQTLNG 175

Query:   129 -HEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEV 187
              H    P  N D  ++ G+ Y      LG    WS+ Y+++     RY    +    E V
Sbjct:   176 LHWDRIPNDNDDEVAARGILYLLIFQQLGQLVRWSWGYRVLLAPKERYIEEGERDNGETV 235

Query:   188 PKEVNKDFDANAQT-----QLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTR 242
               +  + +  N +       L+R  T D  D S   A T S+ D +      +A+ + TR
Sbjct:   236 VAQGRERYTDNPEQVDPDEPLIR--TRDSSDGSTEQA-TGSNDDSDV-FHSGEATPVNTR 291

Query:   243 KESFWK 248
               S+ K
Sbjct:   292 SYSYTK 297

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

SGD|S000005039 YNL095C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 120 (47.3 bits), Expect = 0.00035, P = 0.00035
 Identities = 56/231 (24%), Positives = 106/231 (45%)

Query:     9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEE 68
             V+  PI+++ LI  +G LMA     +LT +A R ++ +V TV  PSL F  +   +  ++
Sbjct:    12 VSVKPIIKIYLIIGVGFLMAKM--GILTVEATRIISDIVLTVLLPSLSFNKIVANIEDKD 69

Query:    69 IISWWFMPVNVAMTFLIGGILGWIVVKLLRPKP-HLEGLVIATCASGNLGNLLLIIVPAI 127
             I S   + ++  + F  G    + VV+L  P P    G ++A     N+ +L +  + ++
Sbjct:    70 IKSVGIICLSALLIFGSGFFFAY-VVRLFLPVPKQWYGGILAGGMFPNISDLPIAYLQSM 128

Query:   128 CHEQGSPF----GNRDVCSSVGLSYASFSMA---LGGFFIWSYSYQLIK-QSSVRYKALA 179
               +QG  F    GN+ V + + +    F +    LGGF +    ++    +S+VR     
Sbjct:   129 --DQGLVFSEEEGNKGVANVI-IFLTMFLICIFNLGGFRLIESDFEYNDDESAVRVSETT 185

Query:   180 QAAEPEEVPKEVNKD----FDANAQTQLLRGTTDDQEDVSVLVASTKSSSD 226
             +  +P       N D    F +N Q QL       ++ ++  + +   ++D
Sbjct:   186 KT-QPAVSANTTNTDTSERFFSNEQ-QLFNNKYTARDSLTEAIGTKGENAD 234

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA;ISS

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

POMBASE|SPAC5D6.04 SPAC5D6.04 "auxin family transmembrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 117 (46.2 bits), Expect = 0.00046, P = 0.00046
 Identities = 37/171 (21%), Positives = 73/171 (42%)

Query:     4 WTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKT 63
             W+         ++V++I++ G ++A +    L  DA++ ++ +    FTP L+F  +   
Sbjct:    13 WSLLRPIIESDLEVIVIALGGYVLAKK--GFLPRDAQKVISSLNVYFFTPCLVFEKVGNG 70

Query:    64 VTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLII 123
             + L+ +I    +PV   +      ++ +++ KL R  P       A     N  +L L +
Sbjct:    71 LNLKMLIDLSLLPVFYVIISAASILISFLLAKLFRLTPRQRNFATACITFQNSNSLPLAL 130

Query:   124 VPAICHEQGS------PFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168
             V ++            P    D  +S G+ Y      LG    WSY Y+++
Sbjct:   131 VSSLATTVKDLLWDKIPDDTPDKVASRGIMYLLIFSQLGQALRWSYGYRIL 181


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      356       337   0.00093  116 3  11 22  0.47    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  232 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.89u 0.16s 27.05t   Elapsed:  00:00:01
  Total cpu time:  26.90u 0.16s 27.06t   Elapsed:  00:00:01
  Start:  Sat May 11 12:44:37 2013   End:  Sat May 11 12:44:38 2013

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISM

GO:0022857 "transmembrane transporter activity" evidence=ISM

GO:0055085 "transmembrane transport" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000390 hypothetical protein (397 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
pfam03547	321	pfam03547, Mem_trans, Membrane transport protein	3e-43
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	7e-11

>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein

 Score =  152 bits (385), Expect = 3e-43
 Identities = 80/337 (23%), Positives = 116/337 (34%), Gaps = 104/337 (30%)

Query: 9   VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEE 68
                ++ V LI +LG L       +L  D    +NK+V     P L+F+S++  VTLE 
Sbjct: 1   TVVEAVLPVFLIMLLGYLAGK--SGILPPDQASGINKLVVYFALPLLIFSSISTNVTLEM 58

Query: 69  IISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAIC 128
           I+ +W +PV V +   I  I+G++V K+ +      G++I T A  N G L L ++ A+ 
Sbjct: 59  IVDFWLIPVLVVLIVAISLIIGFLVSKIFKLPLEWRGVLILTSAFPNTGFLGLPLLLALY 118

Query: 129 HEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVP 188
            E              GLSYA  S+ LG   IW+  Y LI+    +     ++       
Sbjct: 119 GE-------------EGLSYAIISVVLGVIIIWTLGYFLIESRGAKRDKSEESG------ 159

Query: 189 KEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWK 248
                                                           S           
Sbjct: 160 --------------------------------------------DTSGSMTLLILIVVLL 175

Query: 249 RSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVS 308
           + +          L PPT A+++G I G V +L  LI         IQDSI ILG     
Sbjct: 176 KLI----------LNPPTYASLLGLILGLVGFLLPLIFP-----EFIQDSISILG----- 215

Query: 309 AQFYCFVGWLATSSFSYCRDGTIPCITLILGGNLIQG 345
                              D  IP     LG  L  G
Sbjct: 216 -------------------DAAIPMALFSLGLTLALG 233

This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 22/181 (12%)

Query: 3   FWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAK 62
               FE     ++ + LI +LG L+    + +L  +A R L+++V  V  P+L+F S+A 
Sbjct: 2   MMIVFE----VVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIAT 55

Query: 63  TVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCAS-GNLGNLLL 121
              L  +     +  ++  T L    L  ++ + L      E ++ A  ++  N+G L L
Sbjct: 56  A-DLSGLADLGLIVASLVATLLA-FFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGL 113

Query: 122 IIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQA 181
            +  ++       FG +      GL+YA   + +G F +++    L+ +S         +
Sbjct: 114 PVALSL-------FGEK------GLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLS 160

Query: 182 A 182
            
Sbjct: 161 V 161

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
KOG2722	408	consensus Predicted membrane protein [Function unk	100.0
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	100.0
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.96
PRK09903	314	putative transporter YfdV; Provisional	99.95
COG0679	311	Predicted permeases [General function prediction o	99.95
TIGR00841	286	bass bile acid transporter. Functionally character	96.95
COG0385	319	Predicted Na+-dependent transporter [General funct	95.83
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	94.96
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	94.65
COG3329	372	Predicted permease [General function prediction on	92.29
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	89.5
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	81.25
TIGR00807	125	malonate_madL malonate transporter, MadL subunit.	80.25

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=7.2e-50  Score=383.81  Aligned_cols=304  Identities=51%  Similarity=0.932  Sum_probs=240.5

Q ss_pred             CChHHHHHHHH--HHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHH
Q 018417            1 MGFWTFFEVAS--MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN   78 (356)
Q Consensus         1 m~~~~~~~~~l--~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~   78 (356)
                      |++++.+..+-  ..+++++++..+||++++++.|+++++++|.+|++++++|+|||||+.+++++|.+++.++|++|+.
T Consensus         2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn   81 (408)
T KOG2722|consen    2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN   81 (408)
T ss_pred             chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence            67777666555  7899999999999999966679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHH
Q 018417           79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF  158 (356)
Q Consensus        79 ~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~i  158 (356)
                      ..++.+++.++||++.|++|.|++.|+..+.+|+|+|+|+||+.++.++|++++.|||+.+.|..+|+.|+++++.+..+
T Consensus        82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i  161 (408)
T KOG2722|consen   82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI  161 (408)
T ss_pred             HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcChh-hhHhhhhc---CCCCCCc-ccccccccchhhhhhccCCCCCcccchhhhccCCCCCCCcccccc
Q 018417          159 FIWSYSYQLIKQSSV-RYKALAQA---AEPEEVP-KEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIV  233 (356)
Q Consensus       159 l~wT~G~~ll~~~~~-~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (356)
                      ++|||+|.++.+... .....+++   .+.+.++ +.+++|++++.+.++....++++                 ++.  
T Consensus       162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~-----------------~~~--  222 (408)
T KOG2722|consen  162 LRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRN-----------------NQV--  222 (408)
T ss_pred             EEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCC-----------------Cce--
Confidence            999999997765532 11111110   0000011 11112222211111111111111                 000  


Q ss_pred             ccccchhhhhhhhhHHHHH-HHHHHHHhhhChHHHHHHHHHHHHhhhhHhHhhcCCCCcchhHHHHHHHhchhhhhhhhh
Q 018417          234 PQASHLQTRKESFWKRSLE-FLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFY  312 (356)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~nPp~~a~i~g~ii~~~~~l~~~~~~~~~pl~~i~~~~~~lG~~~~~~~~~  312 (356)
                            ..++.+..+|.+. ..+..+|.+++||++|+++|++++++||||+++|++++|+++++|+++.+|         
T Consensus       223 ------~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG---------  287 (408)
T KOG2722|consen  223 ------VGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLG---------  287 (408)
T ss_pred             ------eeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhc---------
Confidence                  0011111111111 123457899999999999999999999999999999999999999999999         


Q ss_pred             hhcccccccccccCCCcchhHHHHHHHhHcccCccccccCC
Q 018417          313 CFVGWLATSSFSYCRDGTIPCITLILGGNLIQGENTTLSNF  353 (356)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~vPl~llilG~~L~~~~~~~~~~~  353 (356)
                                     ++++||+|++||+||.+|+..|....
T Consensus       288 ---------------~~~IP~illvLGgnL~~g~~ss~~~~  313 (408)
T KOG2722|consen  288 ---------------DGAIPCILLVLGGNLIQGLRSSALKT  313 (408)
T ss_pred             ---------------cccchhhhhhhccccccCchhcccCc
Confidence                           99999999999999999998776543

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=100.00  E-value=2.5e-36  Score=299.05  Aligned_cols=295  Identities=27%  Similarity=0.498  Sum_probs=209.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018417            9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGI   88 (356)
Q Consensus         9 ~~l~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~~l   88 (356)
                      +++++++|+++++++||+++  |+|+++++..+.+|++++++++|||+|++++++.+.+++.++|.+++.+++.++++++
T Consensus         1 ~v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (385)
T PF03547_consen    1 TVFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLL   78 (385)
T ss_pred             CcHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence            36789999999999999999  9999999999999999999999999999999987889999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 018417           89 LGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI  168 (356)
Q Consensus        89 l~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~il~wT~G~~ll  168 (356)
                      +++++.|++|.++++++.+..+++|+|++++|+|+++++       ||+      +|..|+++|.++++++.|++|+.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l-------~g~------~~~~~~~~~~~~~~i~~~~~~~~l~  145 (385)
T PF03547_consen   79 LGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQAL-------FGE------RGVAYAIIFDVVNNIILWSLGYFLL  145 (385)
T ss_pred             HHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHH-------hcc------hhhhhehHHHHhhHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999       886      7999999999999999999999999


Q ss_pred             hcChhhhHhhhhcC-CCCCCcc-cccccccchhhh-hhccCCCCCcccchhhhccCCCCCCCcccc-ccccccchhhhhh
Q 018417          169 KQSSVRYKALAQAA-EPEEVPK-EVNKDFDANAQT-QLLRGTTDDQEDVSVLVASTKSSSDPECQI-IVPQASHLQTRKE  244 (356)
Q Consensus       169 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  244 (356)
                      +.++++.+..++++ +.++..+ ++++++...+.+ +...+++.++++..... +..++++..... ..++.+.....+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (385)
T PF03547_consen  146 ESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSST-PSQSSASAPSSVSTSPSPSNSTGAEQ  224 (385)
T ss_pred             cccccccccccccccccccccccccCCccccCCcccccccccccccCCccccc-ccccccccchhhccCCcccccchhhh
Confidence            86644322211110 0000000 000000000000 00000000000100000 000000000000 0011111111111


Q ss_pred             hhhHHHHHHH-HHHHHhhhChHHHHHHHHHHHHhhhhHhHhhcCCCCcchhHHHHHHHhchhhhhhhhhhhccccccccc
Q 018417          245 SFWKRSLEFL-HQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSF  323 (356)
Q Consensus       245 ~~~~~~~~~~-~~~~~~~~nPp~~a~i~g~ii~~~~~l~~~~~~~~~pl~~i~~~~~~lG~~~~~~~~~~~~~~~~~~~~  323 (356)
                      +.+++.++.. +..++.++|||++|+++|++++++|+.+++++.     .++.++++++|                    
T Consensus       225 ~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg--------------------  279 (385)
T PF03547_consen  225 KSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLG--------------------  279 (385)
T ss_pred             hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHH--------------------
Confidence            2222222222 233678999999999999999999998876554     69999999999                    


Q ss_pred             ccCCCcchhHHHHHHHhHcccCccc
Q 018417          324 SYCRDGTIPCITLILGGNLIQGENT  348 (356)
Q Consensus       324 ~~~~~~~vPl~llilG~~L~~~~~~  348 (356)
                          ++++|++|+++|++|++++.+
T Consensus       280 ----~~~~pl~l~~lG~~l~~~~~~  300 (385)
T PF03547_consen  280 ----AAAVPLALFVLGASLARGPRK  300 (385)
T ss_pred             ----hhhHHHHHHHHHHHHhcCCcc
Confidence                999999999999999987654

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.96  E-value=5.1e-28  Score=235.39  Aligned_cols=225  Identities=19%  Similarity=0.209  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q 018417            6 FFEVASMPIVQVLLISVLGALM-ATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFL   84 (356)
Q Consensus         6 ~~~~~l~~vl~vflli~vG~~l-~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~l   84 (356)
                      +++..+++++|+++++++||++ +  |+|+++++..+.+|++++|+++||++|+++.+....+.....+...+......+
T Consensus         2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (321)
T TIGR00946         2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS   79 (321)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999 9  999999999999999999999999999999986322123333444444556667


Q ss_pred             HHHHHHHHHHH-HhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhh---HHHHHHHHHHhHHHH
Q 018417           85 IGGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVG---LSYASFSMALGGFFI  160 (356)
Q Consensus        85 l~~ll~~lv~r-l~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g---~~Y~~iy~iv~~il~  160 (356)
                      ..++++|.+.| .+|.++++++.+.+++.|+|++|+|+|+++++       ||+      +|   +.|+..+.+.++++.
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~------~~~~~~~~~~~~~~~~~~~~  146 (321)
T TIGR00946        80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGE------EGAKILIAALFIDTGAVLMT  146 (321)
T ss_pred             HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcc------cchhhhHHHHHHHhccchhH
Confidence            78889999998 77888899999999999999999999999999       997      35   788899999999999


Q ss_pred             HHHHHHHHhcChhhhHhhhhcCCCCCCcccccccccchhhhhhccCCCCCcccchhhhccCCCCCCCccccccccccchh
Q 018417          161 WSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ  240 (356)
Q Consensus       161 wT~G~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (356)
                      |++|+.+.....++.    +                                +                           
T Consensus       147 ~~~~~~~~~~~~~~~----~--------------------------------~---------------------------  163 (321)
T TIGR00946       147 IALGLFLVSEDGAGG----E--------------------------------G---------------------------  163 (321)
T ss_pred             HHHHHHHhccccccc----c--------------------------------c---------------------------
Confidence            999988764321100    0                                0                           


Q ss_pred             hhhhhhhHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhhhHhHhhcCCCCcc-hhHHHHHHHhchhhhhhhhhhhccccc
Q 018417          241 TRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGYVFVSAQFYCFVGWLA  319 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~nPp~~a~i~g~ii~~~~~l~~~~~~~~~pl-~~i~~~~~~lG~~~~~~~~~~~~~~~~  319 (356)
                       +.++.++..+   +...+.++||+++|.++|+++...++          ++ .++.++++++|                
T Consensus       164 -~~~~~~~~~~---~~~~~~~~nP~iia~i~Gl~~~~~~i----------~lP~~l~~~l~~lg----------------  213 (321)
T TIGR00946       164 -SGESTRLMLI---FVWKKLIKFPPLWAPLLSVILSLVGF----------KMPGLILKSISILS----------------  213 (321)
T ss_pred             -cchhHHHHHH---HHHHHHHhCCChHHHHHHHHHHHHhh----------cCcHHHHHHHHHHH----------------
Confidence             0001111111   11235678999999999999999985          44 59999999999                


Q ss_pred             ccccccCCCcchhHHHHHHHhHcccCc
Q 018417          320 TSSFSYCRDGTIPCITLILGGNLIQGE  346 (356)
Q Consensus       320 ~~~~~~~~~~~vPl~llilG~~L~~~~  346 (356)
                              ++++|++|+++|+.+....
T Consensus       214 --------~~~~plaLl~lG~~l~~~~  232 (321)
T TIGR00946       214 --------GATTPMALFSLGLALSPRK  232 (321)
T ss_pred             --------HHHHHHHHHHHHHhhChhh
Confidence                    9999999999999998543

>PRK09903 putative transporter YfdV; Provisional

Probab=99.95  E-value=4.2e-27  Score=228.61  Aligned_cols=221  Identities=16%  Similarity=0.216  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 018417            7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG   86 (356)
Q Consensus         7 ~~~~l~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~   86 (356)
                      +...+++++|+|+++++||+++  |+|++++++.+.+|++++|+++||++|+++.+. +.+++...+...+..++.++++
T Consensus         2 ~~~~~~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~   78 (314)
T PRK09903          2 LTFFIGDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGC   78 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHH
Confidence            3456788999999999999999  999999999999999999999999999999886 5665553344456667777788


Q ss_pred             HHHHHHHHH-HhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 018417           87 GILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY  165 (356)
Q Consensus        87 ~ll~~lv~r-l~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~il~wT~G~  165 (356)
                      +++++++.| .+|.++++++.....+.++|+||+|+|+++++       ||++.   ..|+.|+..+. +.+++.|++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~---~~~~~~a~~~~-~~~~~~~~~g~  147 (314)
T PRK09903         79 FFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSV---STGLVVAIISI-IVNAITIPIGL  147 (314)
T ss_pred             HHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchh---hhhhHHHHHHH-HHHHHHHHHHH
Confidence            888888876 55667677788889999999999999999999       99731   01565666554 57999999999


Q ss_pred             HHHhcChhhhHhhhhcCCCCCCcccccccccchhhhhhccCCCCCcccchhhhccCCCCCCCccccccccccchhhhhhh
Q 018417          166 QLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKES  245 (356)
Q Consensus       166 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (356)
                      ++++..+.+  +  +                                +                             ++.
T Consensus       148 ~~~~~~~~~--~--~--------------------------------~-----------------------------~~~  162 (314)
T PRK09903        148 YLLNPSSGA--D--G--------------------------------K-----------------------------KNS  162 (314)
T ss_pred             HHHcccccc--c--c--------------------------------c-----------------------------cch
Confidence            998643210  0  0                                0                             001


Q ss_pred             hhHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhhhHhHhhcCCCCcc-hhHHHHHHHhchhhhhhhhhhhcccccccccc
Q 018417          246 FWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGYVFVSAQFYCFVGWLATSSFS  324 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~nPp~~a~i~g~ii~~~~~l~~~~~~~~~pl-~~i~~~~~~lG~~~~~~~~~~~~~~~~~~~~~  324 (356)
                      .++       ..++.+.||+++|.++|+++.+.+.          ++ .++.++++++|                     
T Consensus       163 ~~~-------~l~~~~~nP~iia~~~gl~~~l~~i----------~lP~~i~~~l~~lg---------------------  204 (314)
T PRK09903        163 NLS-------ALISAAKEPVVWAPVLATILVLVGV----------KIPAAWDPTFNLIA---------------------  204 (314)
T ss_pred             HHH-------HHHHHHhchHHHHHHHHHHHHHcCC----------CCCHHHHHHHHHHH---------------------
Confidence            111       2235688999999999999988763          45 59999999999                     


Q ss_pred             cCCCcchhHHHHHHHhHcccCcc
Q 018417          325 YCRDGTIPCITLILGGNLIQGEN  347 (356)
Q Consensus       325 ~~~~~~vPl~llilG~~L~~~~~  347 (356)
                         ++++|++|+.+|++|++.+.
T Consensus       205 ---~~~~PlaL~~iG~~L~~~~~  224 (314)
T PRK09903        205 ---KANSGVAVFAAGLTLAAHKF  224 (314)
T ss_pred             ---HHHHHHHHHHHHHHHhhccc
Confidence               99999999999999988644

>COG0679 Predicted permeases [General function prediction only]

Probab=99.95  E-value=8.1e-27  Score=226.62  Aligned_cols=214  Identities=22%  Similarity=0.349  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 018417            7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG   86 (356)
Q Consensus         7 ~~~~l~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~   86 (356)
                      +..++..++|+++++++||+++  |.+.++++..+.+|++++|+++|||+|+++.++. .+...+...+. ..+...++.
T Consensus         2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~-~~~~~~~~~~~-~~~~~~~~~   77 (311)
T COG0679           2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATAD-LSGLADLGLIV-ASLVATLLA   77 (311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCC-cchhhhHHHHH-HHHHHHHHH
Confidence            4567889999999999999999  9999999999999999999999999999999973 33333444333 345555555


Q ss_pred             HHHHHHHHHH-hCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 018417           87 GILGWIVVKL-LRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY  165 (356)
Q Consensus        87 ~ll~~lv~rl-~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~il~wT~G~  165 (356)
                      .++.+++.|. ++.++++++.+..+.+|+|+|++|+|+...+       ||+      +|+.|+++|....++..|++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G~------~gl~~~~i~~~~~~~~~~~~g~  144 (311)
T COG0679          78 FFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FGE------KGLAYAVIFLIIGLFLMFTLGV  144 (311)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cCc------chHHHHHHHHHHHHHHHHHHHH
Confidence            6666666655 5667777889999999999999999999999       996      7999999999999999999999


Q ss_pred             HHHhcChhhhHhhhhcCCCCCCcccccccccchhhhhhccCCCCCcccchhhhccCCCCCCCccccccccccchhhhhhh
Q 018417          166 QLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKES  245 (356)
Q Consensus       166 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (356)
                      ..+...+.+.+                                                                   .+
T Consensus       145 ~~l~~~~~~~~-------------------------------------------------------------------~~  157 (311)
T COG0679         145 ILLARSGGGTN-------------------------------------------------------------------KS  157 (311)
T ss_pred             HHHHHhcCCch-------------------------------------------------------------------hH
Confidence            99875532100                                                                   01


Q ss_pred             hhHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhhhHhHhhcCCCCcc-hhHHHHHHHhchhhhhhhhhhhcccccccccc
Q 018417          246 FWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGYVFVSAQFYCFVGWLATSSFS  324 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~nPp~~a~i~g~ii~~~~~l~~~~~~~~~pl-~~i~~~~~~lG~~~~~~~~~~~~~~~~~~~~~  324 (356)
                      .|+       ...+.+.||+++|.++|+++...+.          ++ .++.++++++|                     
T Consensus       158 ~~~-------~~~~~~~nP~i~a~i~g~~~~~~~i----------~lP~~~~~~~~~l~---------------------  199 (311)
T COG0679         158 LLS-------VLKKLLTNPLIIALILGLLLNLLGI----------SLPAPLDTAVDLLA---------------------  199 (311)
T ss_pred             HHH-------HHHHHHhCcHHHHHHHHHHHHHcCC----------CCcHHHHHHHHHHH---------------------
Confidence            121       2235788999999999999999874          34 59999999999                     


Q ss_pred             cCCCcchhHHHHHHHhHcccC
Q 018417          325 YCRDGTIPCITLILGGNLIQG  345 (356)
Q Consensus       325 ~~~~~~vPl~llilG~~L~~~  345 (356)
                         ++++||+|+++|++|+..
T Consensus       200 ---~a~~pl~li~lG~~L~~~  217 (311)
T COG0679         200 ---SAASPLALIALGLSLAFL  217 (311)
T ss_pred             ---HhhhhHHHHHHhhhcchh
Confidence               999999999999999983

>TIGR00841 bass bile acid transporter

Probab=96.95  E-value=0.018  Score=55.52  Aligned_cols=105  Identities=14%  Similarity=0.080  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHhhhccCcCChhHHHH---HHHHHHHHHhhHHHHHHhcccCCHHHHH-HHHHHHHHHHHHHHHHHHH
Q 018417           14 IVQVLLISVLGALMATQYWNLLTADARRS---LNKMVFTVFTPSLMFASLAKTVTLEEII-SWWFMPVNVAMTFLIGGIL   89 (356)
Q Consensus        14 vl~vflli~vG~~l~~~r~gil~~~~~~~---LS~Lv~~v~lPaLIF~sl~~~~t~~~l~-~~~~~~~~~~l~~ll~~ll   89 (356)
                      ...+++=+.+|..+|  |..  + +..+.   +.++.. +.+=++++..+...  .+.+. +.+.+.+..++..++++++
T Consensus       140 ~~~v~vPl~lG~~~r--~~~--p-~~~~~~~~~~~~s~-~~l~liv~~~~~~~--~~~i~~~~~~~~~~~~ll~~~~~~~  211 (286)
T TIGR00841       140 LVAVLIPVSIGMLVK--HKL--P-QIAKIILKVGLISV-FLLSVIIAVVGGIN--VENLATIGPLLLLVGILLPLAGFLL  211 (286)
T ss_pred             HHHHHHHHHHHHHHH--HHh--H-HHHHHHHhCchHHH-HHHHHHHHHHHHhh--HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            556666778888888  332  1 12222   222222 11112333333222  22232 2344455566778889999


Q ss_pred             HHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhh
Q 018417           90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI  127 (356)
Q Consensus        90 ~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL  127 (356)
                      ||+++|.+|.+.++++.....+...|++ +++++....
T Consensus       212 g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~  248 (286)
T TIGR00841       212 GYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS  248 (286)
T ss_pred             HHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh
Confidence            9999999999988888999999999999 999998877

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=95.83  E-value=0.23  Score=48.78  Aligned_cols=148  Identities=20%  Similarity=0.148  Sum_probs=83.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHH-HHHHHHHH
Q 018417            2 GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVA   80 (356)
Q Consensus         2 ~~~~~~~~~l~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~-~~~~~~~~   80 (356)
                      +.+++++..+.   .+++=+.+|-++++.-.++.  +..+..-..+-...+=+.++..++..  .+++... ..+.+..+
T Consensus       158 ~~~~m~~~i~~---~vllP~~LG~~~r~~~~~~~--~~~~~~l~~vs~~~illIv~~~~s~~--~~~~~~~~~~v~~~v~  230 (319)
T COG0385         158 DVGGMFLSILL---QVLLPFVLGQLLRPLLPKWV--ERLKKALPPVSVLSILLIVYAAFSAA--VENGIWSGLLIFVAVI  230 (319)
T ss_pred             chHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHhhhcchhhHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHH
Confidence            44565654433   33444566666662111111  11112222222333444455555443  2333222 23445567


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHHHH
Q 018417           81 MTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFI  160 (356)
Q Consensus        81 l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~il~  160 (356)
                      +..+++++++|..+|.++.|++++.....+..-.|.+ +|.|+...-       |+++     ....-..+|.+.+++.-
T Consensus       231 ~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~-lg~alA~~f-------~~~~-----~~alP~aif~~~q~~~~  297 (319)
T COG0385         231 LHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLG-LGAALAAAF-------FGNP-----LMALPLAIFSVWQNMSG  297 (319)
T ss_pred             HHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHH-HHHHHHHhc-------CCCc-----hhHhHHHHHHHHHHHHH
Confidence            7788899999999999999999999999999998875 577777653       5522     34445566665555554


Q ss_pred             HHHHHHHHh
Q 018417          161 WSYSYQLIK  169 (356)
Q Consensus       161 wT~G~~ll~  169 (356)
                      =-++.+.-+
T Consensus       298 a~la~~~~~  306 (319)
T COG0385         298 AVLAGLYAR  306 (319)
T ss_pred             HHHHHHHHh
Confidence            444444433

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=94.96  E-value=0.43  Score=46.77  Aligned_cols=108  Identities=15%  Similarity=0.212  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHhhhccCcCChh--HHHHHHHHHHHHHhhHHHHHHhcccCC---HHH--HHHHHHHHHHHHHHHHHHH
Q 018417           15 VQVLLISVLGALMATQYWNLLTAD--ARRSLNKMVFTVFTPSLMFASLAKTVT---LEE--IISWWFMPVNVAMTFLIGG   87 (356)
Q Consensus        15 l~vflli~vG~~l~~~r~gil~~~--~~~~LS~Lv~~v~lPaLIF~sl~~~~t---~~~--l~~~~~~~~~~~l~~ll~~   87 (356)
                      ..+++=..+|-.+|  |.  +.+.  ..|..-+.+-...+-.+++.++...+.   .++  ......+...++...++.+
T Consensus       165 ~~vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  240 (313)
T PF13593_consen  165 LTVLLPLVLGQLLR--RW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL  240 (313)
T ss_pred             HHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence            44555566777776  22  1111  123334444566667777777765421   111  1233334445566677778


Q ss_pred             HHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhh
Q 018417           88 ILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI  127 (356)
Q Consensus        88 ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL  127 (356)
                      .++|..+|.++.+++++....+|++ ..+.-+|+|+...+
T Consensus       241 ~~~~~~~r~~~~~~~d~iA~~F~gs-~Ksl~~gvpl~~~l  279 (313)
T PF13593_consen  241 VLGWLAARLLGFSRPDRIAVLFCGS-QKSLALGVPLASIL  279 (313)
T ss_pred             HHHHHHHhhcCCChhhEEEEEEEcC-cCcchhHHHHHHHH
Confidence            8899999999999999988888766 68888999999999

>TIGR00832 acr3 arsenical-resistance protein

Probab=94.65  E-value=0.5  Score=46.64  Aligned_cols=50  Identities=20%  Similarity=0.212  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhh
Q 018417           77 VNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI  127 (356)
Q Consensus        77 ~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL  127 (356)
                      +..++..++++.++|+++|.+|.++++++...+++...|+ .+++++..+.
T Consensus       250 ~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~-~lai~lA~~~  299 (328)
T TIGR00832       250 IPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNF-ELAIAVAISL  299 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhH-HHHHHHHHHh
Confidence            3445778889999999999999999999999999888776 4788888777

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>COG3329 Predicted permease [General function prediction only]

Probab=92.29  E-value=9.9  Score=37.35  Aligned_cols=21  Identities=24%  Similarity=0.513  Sum_probs=19.1

Q ss_pred             HhhhChHHHHHHHHHHHHhhh
Q 018417          259 EELLAPPTLAAIVGFIFGAVV  279 (356)
Q Consensus       259 ~~~~nPp~~a~i~g~ii~~~~  279 (356)
                      +.++||.+...+.|++++++.
T Consensus       213 Esflnpal~lllggl~iGlit  233 (372)
T COG3329         213 ESFLNPALVLLLGGLAIGLIT  233 (372)
T ss_pred             HHHcCchHHHHHHHHHHhhee
Confidence            578999999999999999986

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=89.50  E-value=9.6  Score=38.44  Aligned_cols=83  Identities=18%  Similarity=0.246  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHH----HHHHHHHHHHHHH
Q 018417           11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW----FMPVNVAMTFLIG   86 (356)
Q Consensus        11 l~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~----~~~~~~~l~~ll~   86 (356)
                      +..+-++.+++++|.++.  ..|++|.+..+.+-..+....+|..++--+.+. +..++....    ...+.+.+++.++
T Consensus        22 f~~l~~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~-Dlr~i~~~g~~~l~~F~~~~~g~viG   98 (378)
T PF05684_consen   22 FKYLPGAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSA-DLRRILRLGGRLLLAFLIGAVGTVIG   98 (378)
T ss_pred             HhhcCHHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            456677888999999999  999995555667778888888888877766664 455554442    2333344555566


Q ss_pred             HHHHHHHHHH
Q 018417           87 GILGWIVVKL   96 (356)
Q Consensus        87 ~ll~~lv~rl   96 (356)
                      ..+++.+.+.
T Consensus        99 ~~va~~l~~~  108 (378)
T PF05684_consen   99 AVVAFLLFGG  108 (378)
T ss_pred             HHHHHHHHhh
Confidence            6666655543

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=81.25  E-value=14  Score=36.99  Aligned_cols=88  Identities=14%  Similarity=0.181  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhhhccCcCChhHH---HHHHHHHHHHHhhHHHH-HHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 018417           17 VLLISVLGALMATQYWNLLTADAR---RSLNKMVFTVFTPSLMF-ASLAKTVTLEEIISWW--FMPVNVAMTFLIGGILG   90 (356)
Q Consensus        17 vflli~vG~~l~~~r~gil~~~~~---~~LS~Lv~~v~lPaLIF-~sl~~~~t~~~l~~~~--~~~~~~~l~~ll~~ll~   90 (356)
                      ...++.+|.+++  ..|+++++-.   +.+.|++.+.+++.+++ -.+... +++++.+..  ...+..+...+...+.+
T Consensus       207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t-~l~~L~~a~t~~~vviiv~~Vlg~ii~s  283 (347)
T TIGR00783       207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYI-DLDDLVAALSWQFVVICLSVVVAMILGG  283 (347)
T ss_pred             HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccC-CHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence            456777888899  9999997654   45667777777877776 355543 788887754  33444455556667778


Q ss_pred             HHHHHHhCCCCCccchh
Q 018417           91 WIVVKLLRPKPHLEGLV  107 (356)
Q Consensus        91 ~lv~rl~~~~~~~~~~~  107 (356)
                      ++++|+++.-+-+..+.
T Consensus       284 ~lvGKllG~YPiE~aIt  300 (347)
T TIGR00783       284 AFLGKLMGMYPVESAIT  300 (347)
T ss_pred             HHHHHHhCCChHHHHHH
Confidence            89999998755444433

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>TIGR00807 malonate_madL malonate transporter, MadL subunit

Probab=80.25  E-value=17  Score=30.70  Aligned_cols=80  Identities=9%  Similarity=0.124  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018417           15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVV   94 (356)
Q Consensus        15 l~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~~ll~~lv~   94 (356)
                      +.+++++.+.-+++  |+|++++++.+.+.--. ....|..+--+-.+++ ...+..-+...+.++.+..+++++--++.
T Consensus        38 iAMlLLi~~~~~l~--k~G~l~~~te~Gi~FW~-aMYIPIVVAMAA~QNV-v~Al~gG~~Allagi~av~~~~~~i~~l~  113 (125)
T TIGR00807        38 IAMILLIISKELLA--KRGHLPQVTQFGVGFWS-AMYIPIVVAMAAGQNV-VAALSGGMLALLASVAALIVTVLVIRWIS  113 (125)
T ss_pred             HHHHHHHHHHHHHH--HcCCCChhHHhHHHHHH-ccHhHHHHHHhhhchh-HHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999  99999999888775332 3446766554444442 33444555556667777777777777777


Q ss_pred             HHhC
Q 018417           95 KLLR   98 (356)
Q Consensus        95 rl~~   98 (356)
                      |+-|
T Consensus       114 r~g~  117 (125)
T TIGR00807       114 KSSY  117 (125)
T ss_pred             HhCC
Confidence            6643

The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 22/101 (21%)

Query: 4   WTFFEVASMP--IVQV--LLISVLGALM----AT-QYWNLLTADARRSLNKMVFTVFTPS 54
           +       +P  ++      +S++   +    AT   W  +  D   ++ +    V  P+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 55  LM---FASLA--------KTVTLEEIISWWFMPVNVAMTFL 84
                F  L+         T+ L   + W+ +  +  M  +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLS--LIWFDVIKSDVMVVV 408

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 24/53 (45%)

Query: 248 KRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIE 300
           K++L+ L   L+ L A                        DSAP   I+ ++E
Sbjct: 19  KQALKKLQASLK-LYAD-----------------------DSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	96.2

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=96.20  E-value=0.091  Score=50.40  Aligned_cols=52  Identities=17%  Similarity=0.114  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhh
Q 018417           75 MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI  127 (356)
Q Consensus        75 ~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL  127 (356)
                      +.+..++..+++++++|.++|.+|.+++++....+.+...|+ -+++++....
T Consensus       230 v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~  281 (332)
T 3zux_A          230 IFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH  281 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH
Confidence            334456677789999999999999999999999988888898 5999999888

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00