Citrus Sinensis ID: 018434

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
cccHHHHHcccccccccEEEEEEEEEcccccccccEEEEccccccccccccccccccccccccccccccEEEEccEEEEccccccccEEEEEEEEccccccccccHHHHHHHHHHHccccccccEEEccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccEEEEEccccccccHHHHHHHHHHHHccccc
ccHHHHHHcccccccccEEEEEEEEEEcccccccccccccccccccHHHcccEccccccccccccccccEEEEEEEEccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccEEEccccccEEHHHHHHHHHHHHHHccEEEcccccEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEcccccEEEEcccHHHcccccccccccccccccHHHHHHHHHHEEcccc
MSLLSDLLNLNLSESTDKIIAEYIWIggsgmdmrskartlpgpvsdpsklpkwnydgsstgqapgedsevilypqaifkdpfrrgnnilvmcdaytpagepiptnkrhaaakifshsdvvaeepwygiEQEYTLLQKdvkwplgwpiggypgpqgpyycgvgadkawgrdivDSHYKACLYAGinisgingevmpgqwefqvgpavgisagDQLWVARYILERITEIAGvvlsfdpkpiqgdwngagahanystksmrndgGFEVIKKAIEKLGLRHSEHIAAygegnerrltgkhetadintfkwgvanrgasirvgrdtekegkgyfedrrpasnmdpyVVTSMIAETTILWKP
MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLpgpvsdpsklpKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANystksmrndgGFEVIKKAIEKLGLRHSEHIAAygegnerrltgkhetadintfkwgvanrgasirvgrdtekegkgyfedrrpasnmdpyvVTSMIAETTILWKP
MsllsdllnlnlsesTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLgwpiggypgpqgpyycgvgADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
*******LNLNLSESTDKIIAEYIWIGG*****************************************VILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTK*MRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRV**********************PYVVTSMIAETTILW**
**LLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYD********GEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST****GEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query356 2.2.26 [Sep-21-2011]
P32289356 Glutamine synthetase nodu N/A no 1.0 1.0 0.924 0.0
Q42899356 Glutamine synthetase cyto N/A no 1.0 1.0 0.912 0.0
P51118356 Glutamine synthetase cyto no no 1.0 1.0 0.912 0.0
P51119356 Glutamine synthetase cyto yes no 1.0 1.0 0.918 0.0
Q56WN1356 Glutamine synthetase cyto yes no 1.0 1.0 0.910 0.0
P04078356 Glutamine synthetase cyto N/A no 1.0 1.0 0.904 0.0
Q43785356 Glutamine synthetase nodu N/A no 1.0 1.0 0.890 0.0
P00965356 Glutamine synthetase N-1 N/A no 1.0 1.0 0.896 0.0
O04867356 Glutamine synthetase OS=A N/A no 1.0 1.0 0.898 0.0
O82560356 Glutamine synthetase cyto no no 1.0 1.0 0.898 0.0
>sp|P32289|GLNA_VIGAC Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1 Back     alignment and function desciption
 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/356 (92%), Positives = 346/356 (97%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           MSLLSDL+NLNLS++T+KIIAEYIWIGGSG+D+RSKARTLPGPVSDPSKLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDTTEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH AAKIFSH DVV
Sbjct: 61  GQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVV 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQKDV WPLGWP+GG+PGPQGPYYCG GADKA+GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240
           YAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVVLSFDPKPI+
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIK 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETAD 300
           GDWNGAGAH NYSTK+MRNDGG+EVIK AIEKLG RH EHIAAYGEGNERRLTG+HETAD
Sbjct: 241 GDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETAD 300

Query: 301 INTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           INTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct: 301 INTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356

Vigna aconitifolia (taxid: 3918)
EC: 6EC: .EC: 3EC: .EC: 1EC: .EC: 2
>sp|Q42899|GLNA1_LOTJA Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2 Back     alignment and function description
>sp|P51118|GLNA1_VITVI Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1 Back     alignment and function description
>sp|P51119|GLNA2_VITVI Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q56WN1|GLN11_ARATH Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2 Back     alignment and function description
>sp|P04078|GLNA1_MEDSA Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|Q43785|GLNA3_MEDSA Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1 Back     alignment and function description
>sp|P00965|GLNA3_PHAVU Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2 Back     alignment and function description
>sp|O04867|GLNA1_ALNGL Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1 Back     alignment and function description
>sp|O82560|GLNA2_SOYBN Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
2213877356 glutamine synthetase [Hevea brasiliensis 1.0 1.0 0.938 0.0
159138927356 glutamine synthetase [Gossypium raimondi 1.0 1.0 0.935 0.0
159138921356 glutamine synthetase [Gossypium herbaceu 1.0 1.0 0.935 0.0
417060356 RecName: Full=Glutamine synthetase nodul 1.0 1.0 0.924 0.0
224065130358 predicted protein [Populus trichocarpa] 1.0 0.994 0.924 0.0
118486183356 unknown [Populus trichocarpa] gi|1184868 1.0 1.0 0.924 0.0
225451379356 PREDICTED: glutamine synthetase cytosoli 1.0 1.0 0.924 0.0
599656356 glutamate--ammonia ligase [Brassica napu 1.0 1.0 0.921 0.0
159138929356 glutamine synthetase [Gossypium hirsutum 1.0 1.0 0.932 0.0
147798954356 hypothetical protein VITISV_015673 [Viti 1.0 1.0 0.921 0.0
>gi|2213877|gb|AAB61597.1| glutamine synthetase [Hevea brasiliensis] Back     alignment and taxonomy information
 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/356 (93%), Positives = 350/356 (98%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           MSLLSDL+NLNLS++TDKIIAEYIWIGGSGMDMRSKARTL GPVSDPSKLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDTTDKIIAEYIWIGGSGMDMRSKARTLSGPVSDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSH DVV
Sbjct: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVV 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQ+DVKWP+GWP+GGYPGPQGPYYC +GADK++GRD+VDSHYK+CL
Sbjct: 121 AEEPWYGIEQEYTLLQRDVKWPIGWPLGGYPGPQGPYYCSIGADKSFGRDVVDSHYKSCL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240
           YAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVVLSFDPKPIQ
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIQ 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETAD 300
           GDWNGAGAH NYSTKSMR+DGG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTG+HETAD
Sbjct: 241 GDWNGAGAHTNYSTKSMRHDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETAD 300

Query: 301 INTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           INTF WGVANRGASIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct: 301 INTFLWGVANRGASIRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|159138927|gb|ABW89463.1| glutamine synthetase [Gossypium raimondii] Back     alignment and taxonomy information
>gi|159138921|gb|ABW89460.1| glutamine synthetase [Gossypium herbaceum] gi|159138933|gb|ABW89466.1| glutamine synthetase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|417060|sp|P32289.1|GLNA_VIGAC RecName: Full=Glutamine synthetase nodule isozyme; Short=GS; AltName: Full=Glutamate--ammonia ligase gi|170637|gb|AAA34239.1| glutamine synthetase [Vigna aconitifolia] gi|1094850|prf||2106409A Gln synthetase Back     alignment and taxonomy information
>gi|224065130|ref|XP_002301683.1| predicted protein [Populus trichocarpa] gi|222843409|gb|EEE80956.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118486183|gb|ABK94934.1| unknown [Populus trichocarpa] gi|118486859|gb|ABK95264.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225451379|ref|XP_002263856.1| PREDICTED: glutamine synthetase cytosolic isozyme 2 [Vitis vinifera] gi|296087096|emb|CBI33470.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|599656|emb|CAA58118.1| glutamate--ammonia ligase [Brassica napus] Back     alignment and taxonomy information
>gi|159138929|gb|ABW89464.1| glutamine synthetase [Gossypium hirsutum] gi|159138931|gb|ABW89465.1| glutamine synthetase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|147798954|emb|CAN68162.1| hypothetical protein VITISV_015673 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
TAIR|locus:2151739356 GSR 1 "glutamine synthase clon 0.957 0.957 0.862 1.5e-163
TAIR|locus:2174175356 GLN1;4 "glutamine synthetase 1 0.957 0.957 0.850 2.2e-160
TAIR|locus:2088580354 GLN1.3 "glutamine synthetase 1 0.949 0.954 0.840 7e-157
TAIR|locus:2198080353 GLN1;5 "glutamine synthetase 1 0.949 0.957 0.789 1.8e-149
TAIR|locus:2165897430 GS2 "glutamine synthetase 2" [ 0.957 0.793 0.759 8.4e-145
SGD|S000006239370 GLN1 "Glutamine synthetase (GS 0.912 0.878 0.551 9.4e-98
FB|FBgn0001145369 Gs2 "Glutamine synthetase 2" [ 0.926 0.894 0.563 1.1e-96
ASPGD|ASPL0000016342357 glnA [Emericella nidulans (tax 0.918 0.915 0.543 7.6e-96
CGD|CAL0001010373 GLN1 [Candida albicans (taxid: 0.921 0.879 0.541 1.2e-95
UNIPROTKB|G4NG12358 MGG_14279 "Glutamine synthetas 0.918 0.913 0.549 2e-95
TAIR|locus:2151739 GSR 1 "glutamine synthase clone R1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1592 (565.5 bits), Expect = 1.5e-163, P = 1.5e-163
 Identities = 294/341 (86%), Positives = 311/341 (91%)

Query:    16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75
             TDKIIAEYIW+GGSGMDMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVILYPQ
Sbjct:    16 TDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQ 75

Query:    76 AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLL 135
             AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAK+FS+ DV AE PWYGIEQEYTLL
Sbjct:    76 AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKVFSNPDVAAEVPWYGIEQEYTLL 135

Query:   136 QKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 195
             QKDVKWP+                   ADK++GRD+VDSHYKACLYAGINISGINGEVMP
Sbjct:   136 QKDVKWPVGWPIGGYPGPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMP 195

Query:   196 GQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTK 255
             GQWEFQVGPAVGISA D++WVARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTK
Sbjct:   196 GQWEFQVGPAVGISAADEIWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHCNYSTK 255

Query:   256 SMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASI 315
             SMR +GG+E+IKKAI+KLGLRH EHIAAYGEGNERRLTG HETADINTF WGVANRGASI
Sbjct:   256 SMREEGGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRGASI 315

Query:   316 RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
             RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:   316 RVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356
GO:0003824 "catalytic activity" evidence=IEA
GO:0004356 "glutamate-ammonia ligase activity" evidence=IEA;ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005829 "cytosol" evidence=TAS
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0042128 "nitrate assimilation" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0010150 "leaf senescence" evidence=IEP
GO:0005507 "copper ion binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
TAIR|locus:2174175 GLN1;4 "glutamine synthetase 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088580 GLN1.3 "glutamine synthetase 1.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198080 GLN1;5 "glutamine synthetase 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165897 GS2 "glutamine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000006239 GLN1 "Glutamine synthetase (GS)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
FB|FBgn0001145 Gs2 "Glutamine synthetase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000016342 glnA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0001010 GLN1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|G4NG12 MGG_14279 "Glutamine synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q43127GLNA2_ARATH6, ., 3, ., 1, ., 20.79030.99150.8209nono
O22504GLNA1_DAUCA6, ., 3, ., 1, ., 20.83560.98871.0N/Ano
P08282GLNA1_PEA6, ., 3, ., 1, ., 20.88100.99150.9943N/Ano
Q8GXW5GLN15_ARATH6, ., 3, ., 1, ., 20.83720.94940.9575nono
P32288GLNA_YEAST6, ., 3, ., 1, ., 20.59460.92130.8864yesno
P04770GLNA1_PHAVU6, ., 3, ., 1, ., 20.89041.01.0N/Ano
P14654GLN12_ORYSJ6, ., 3, ., 1, ., 20.85910.99710.9943nono
P14656GLN11_ORYSJ6, ., 3, ., 1, ., 20.87641.01.0yesno
P04771GLNA2_PHAVU6, ., 3, ., 1, ., 20.89041.01.0N/Ano
Q43785GLNA3_MEDSA6, ., 3, ., 1, ., 20.89041.01.0N/Ano
P14655GLNA2_ORYSJ6, ., 3, ., 1, ., 20.78371.00.8317nono
P15102GLNA4_PHAVU6, ., 3, ., 1, ., 20.80051.00.8298N/Ano
Q9FMD9GLN14_ARATH6, ., 3, ., 1, ., 20.89041.01.0nono
Q9LVI8GLN13_ARATH6, ., 3, ., 1, ., 20.88660.99150.9971nono
Q43066GLNA4_PEA6, ., 3, ., 1, ., 20.88160.99710.9943N/Ano
O00088GLNA_AGABI6, ., 3, ., 1, ., 20.61070.97470.9802N/Ano
P25462GLNAC_MAIZE6, ., 3, ., 1, ., 20.78180.99150.8345N/Ano
P04078GLNA1_MEDSA6, ., 3, ., 1, ., 20.90441.01.0N/Ano
Q06378GLNA3_HORVU6, ., 3, ., 1, ., 20.86040.96620.9662N/Ano
Q8LCE1GLN12_ARATH6, ., 3, ., 1, ., 20.87921.01.0nono
Q6FMT6GLNA_CANGA6, ., 3, ., 1, ., 20.60410.92690.8870yesno
P14636GLNA3_LUPAN6, ., 3, ., 1, ., 20.86340.88481.0N/Ano
P23712GLNA_LACSA6, ., 3, ., 1, ., 20.88410.99430.9888N/Ano
O82560GLNA2_SOYBN6, ., 3, ., 1, ., 20.89881.01.0nono
P38562GLNA4_MAIZE6, ., 3, ., 1, ., 20.86790.99711.0N/Ano
P38563GLNA5_MAIZE6, ., 3, ., 1, ., 20.85630.99710.9943N/Ano
P38560GLNA2_MAIZE6, ., 3, ., 1, ., 20.84550.99710.9646N/Ano
P38561GLNA3_MAIZE6, ., 3, ., 1, ., 20.86511.01.0N/Ano
O04867GLNA1_ALNGL6, ., 3, ., 1, ., 20.89881.01.0N/Ano
Q96UV5GLNA_HEBCY6, ., 3, ., 1, ., 20.61720.93530.9406N/Ano
Q42624GLNAC_BRANA6, ., 3, ., 1, ., 20.79491.00.8317N/Ano
Q56WN1GLN11_ARATH6, ., 3, ., 1, ., 20.91011.01.0yesno
Q4W8D0GLN13_ORYSJ6, ., 3, ., 1, ., 20.83380.99710.9594nono
P51118GLNA1_VITVI6, ., 3, ., 1, ., 20.91291.01.0nono
P51119GLNA2_VITVI6, ., 3, ., 1, ., 20.91851.01.0yesno
O22506GLNA2_DAUCA6, ., 3, ., 1, ., 20.78371.00.8240N/Ano
P13564GLNA2_HORVU6, ., 3, ., 1, ., 20.77620.99150.8133N/Ano
P52782GLNA_LUPLU6, ., 3, ., 1, ., 20.89800.99151.0N/Ano
P52783GLNA_PINSY6, ., 3, ., 1, ., 20.84500.99710.9943N/Ano
P24099GLNA1_SOYBN6, ., 3, ., 1, ., 20.87640.99711.0nono
P20478GLNA2_DROME6, ., 3, ., 1, ., 20.59260.97470.9403yesno
Q9XQ94GLNA2_MEDSA6, ., 3, ., 1, ., 20.80051.00.8317N/Ano
Q42899GLNA1_LOTJA6, ., 3, ., 1, ., 20.91291.01.0N/Ano
P38559GLNA1_MAIZE6, ., 3, ., 1, ., 20.85310.99430.9915N/Ano
P12424GLNA_NICPL6, ., 3, ., 1, ., 20.89850.99710.9971N/Ano
P32289GLNA_VIGAC6, ., 3, ., 1, ., 20.92411.01.0N/Ano
Q42688GLNA1_CHLRE6, ., 3, ., 1, ., 20.60760.98310.9162N/Ano
P07694GLNA3_PEA6, ., 3, ., 1, ., 20.88450.99710.9943N/Ano
P00965GLNA3_PHAVU6, ., 3, ., 1, ., 20.89601.01.0N/Ano
P08281GLNA2_PEA6, ., 3, ., 1, ., 20.79491.00.8279N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.10.998
3rd Layer6.3.1.20.993

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GS1-2
RecName- Full=Glutamine synthetase cytosolic isozyme 2; EC=6.3.1.2; AltName- Full=Glutamate--ammonia ligase; (356 aa)
(Vitis vinifera)
Predicted Functional Partners:
gdhA
RecName- Full=Glutamate dehydrogenase; Short=GDH; EC=1.4.1.3; (411 aa)
     •• 0.944
GSVIVG00037107001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (1679 aa)
   • •• 0.928
GSVIVG00036600001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (595 aa)
     •• 0.926
gdhB
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (411 aa)
     •• 0.926
GSVIVG00000656001
SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (1490 aa)
     •• 0.923
GSVIVG00034207001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (449 aa)
     •• 0.915
GSVIVG00024074001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (589 aa)
     •• 0.913
GSVIVG00010970001
RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (408 aa)
     •• 0.913
GSVIVG00035979001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (582 aa)
     •• 0.911
GSVIVG00012864001
SubName- Full=Chromosome undetermined scaffold_408, whole genome shotgun sequence; (369 aa)
     •• 0.906

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
PLN02284354 PLN02284, PLN02284, glutamine synthetase 0.0
PLN03036432 PLN03036, PLN03036, glutamine synthetase; Provisio 0.0
pfam00120259 pfam00120, Gln-synt_C, Glutamine synthetase, catal 2e-83
COG0174443 COG0174, GlnA, Glutamine synthetase [Amino acid tr 2e-65
pfam0395184 pfam03951, Gln-synt_N, Glutamine synthetase, beta- 3e-17
TIGR00653459 TIGR00653, GlnA, glutamine synthetase, type I 1e-15
TIGR03105435 TIGR03105, gln_synth_III, glutamine synthetase, ty 3e-05
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase Back     alignment and domain information 
 Score =  798 bits (2062), Expect = 0.0
 Identities = 334/354 (94%), Positives = 343/354 (96%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           MSLLSDL+NLNLS+STDKIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVILYPQAIFKDPFR GNNILVMCDAYTPAGEPIPTNKR  AAKIFSH DV 
Sbjct: 61  GQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVA 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQKDVKWPLGWP+GGYPGPQGPYYCGVGADKA+GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGADKAFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240
           YAGINISGINGEVMPGQWEFQVGP VGISAGDQLWVARYILERITEIAGVV+SFDPKPI 
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETAD 300
           GDWNGAGAH NYSTKSMR DGG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETAD
Sbjct: 241 GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETAD 300

Query: 301 INTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354
           INTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct: 301 INTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354

Length = 354
>gnl|CDD|178603 PLN03036, PLN03036, glutamine synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain Back     alignment and domain information
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain Back     alignment and domain information
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I Back     alignment and domain information
>gnl|CDD|234109 TIGR03105, gln_synth_III, glutamine synthetase, type III Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 356
PLN02284354 glutamine synthetase 100.0
PLN03036432 glutamine synthetase; Provisional 100.0
COG0174443 GlnA Glutamine synthetase [Amino acid transport an 100.0
TIGR00653460 GlnA glutamine synthetase, type I. Alternate name: 100.0
PRK09469469 glnA glutamine synthetase; Provisional 100.0
TIGR03105435 gln_synth_III glutamine synthetase, type III. This 100.0
PF00120259 Gln-synt_C: Glutamine synthetase, catalytic domain 100.0
KOG0683380 consensus Glutamine synthetase [Amino acid transpo 100.0
COG3968 724 Uncharacterized protein related to glutamine synth 99.67
PF0395184 Gln-synt_N: Glutamine synthetase, beta-Grasp domai 99.59
TIGR02050287 gshA_cyan_rel uncharacterized enzyme. This family 98.83
PRK13517 373 carboxylate-amine ligase; Provisional 98.6
PRK13515 371 carboxylate-amine ligase; Provisional 98.54
PRK13516 373 gamma-glutamyl:cysteine ligase; Provisional 98.46
PRK13518 357 carboxylate-amine ligase; Provisional 98.24
TIGR02048 376 gshA_cyano glutamate--cysteine ligase, cyanobacter 98.07
PLN02611 482 glutamate--cysteine ligase 98.05
PF04107288 GCS2: Glutamate-cysteine ligase family 2(GCS2); In 97.45
TIGR01436 446 glu_cys_lig_pln glutamate--cysteine ligase, plant 97.43
COG2170 369 Uncharacterized conserved protein [Function unknow 97.03
TIGR03444 390 gshA_related glutamate--cysteine ligase family pro 96.63
KOG0683380 consensus Glutamine synthetase [Amino acid transpo 92.38
PF06877104 RraB: Regulator of ribonuclease activity B; InterP 89.27
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 87.8
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 85.26
PRK02471 752 bifunctional glutamate--cysteine ligase/glutathion 80.33
>PLN02284 glutamine synthetase Back     alignment and domain information 
Probab=100.00  E-value=2.6e-94  Score=704.75  Aligned_cols=354  Identities=94%  Similarity=1.545  Sum_probs=317.2

Q ss_pred             ChhhHHhhcCCCCCCCCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCCcccCcCCCccEEEEeeeeeec
Q 018434            1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD   80 (356)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PDt~~~~   80 (356)
                      ||..++..+++++++.+...+.|+|+|+.++++|||.+.+..+.+.+++.++|+||||++++..++++|++|+|||++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~~~~~fdGssi~~~~~~~sD~~l~PDt~~~~   80 (354)
T PLN02284          1 MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD   80 (354)
T ss_pred             CchhhhhHhhcccCcCCeEEEEEEEEEEEecCCCCceEEecccccccccCCceeecCCCCCCccCCCceEEEEccEEEEC
Confidence            45566677777779999999999999999999999999999998888888999999999988778899999999999999


Q ss_pred             CCCCCCeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccc
Q 018434           81 PFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCG  160 (356)
Q Consensus        81 Pw~~~~~a~v~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (356)
                      ||.++++++|+||++++||+|++.|||++|||+++++++.|+++++|+|+|||||+.+...+.+++.++.+.++++||+.
T Consensus        81 Pw~~~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~  160 (354)
T PLN02284         81 PFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCG  160 (354)
T ss_pred             CCCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccC
Confidence            99875689999999999999999999999999999999999999999999999998653223344433456677788777


Q ss_pred             cCcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccC
Q 018434          161 VGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ  240 (356)
Q Consensus       161 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~  240 (356)
                      .+.+..+.++++++++++|+++||+|+++|||+|||||||++.|.++|+|||++++||++||+||++||++|||||||+.
T Consensus       161 ~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~  240 (354)
T PLN02284        161 VGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP  240 (354)
T ss_pred             cchhhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCC
Confidence            66544556899999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 018434          241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD  320 (356)
Q Consensus       241 g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~  320 (356)
                      ++++|||||+|+|||+.+.+++.+.++++++|+.|+|+++++||++||||||+|++|||.+++++||.+||+++||||..
T Consensus       241 ~~~~GSGmH~H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~NSYkRL~p~~eap~~~~~~wg~~NRsa~iRIP~~  320 (354)
T PLN02284        241 GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASIRVGRD  320 (354)
T ss_pred             CCCccCcceeecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhcCcHhhcCCCccCcccccceeecCCCceeEEECCC
Confidence            55799999999999975434577889999999989999999999999999999999999667999999999999999976


Q ss_pred             CCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434          321 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW  354 (356)
Q Consensus       321 ~~~~~~~riE~R~~da~aNPYLalAailaAgl~G  354 (356)
                      .+..+++|||+|+||++|||||++|++|++++.+
T Consensus       321 ~~~~~~~riE~R~pd~~aNPYLa~aaila~~~~~  354 (354)
T PLN02284        321 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW  354 (354)
T ss_pred             CCCCCCCEEEEcCCCCCCCHHHHHHHHHHHHhcC
Confidence            6433357999999999999999999999999863

>PLN03036 glutamine synthetase; Provisional Back     alignment and domain information
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00653 GlnA glutamine synthetase, type I Back     alignment and domain information
>PRK09469 glnA glutamine synthetase; Provisional Back     alignment and domain information
>TIGR03105 gln_synth_III glutamine synthetase, type III Back     alignment and domain information
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6 Back     alignment and domain information
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only] Back     alignment and domain information
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6 Back     alignment and domain information
>TIGR02050 gshA_cyan_rel uncharacterized enzyme Back     alignment and domain information
>PRK13517 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PRK13515 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional Back     alignment and domain information
>PRK13518 carboxylate-amine ligase; Provisional Back     alignment and domain information
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative Back     alignment and domain information
>PLN02611 glutamate--cysteine ligase Back     alignment and domain information
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6 Back     alignment and domain information
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type Back     alignment and domain information
>COG2170 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR03444 gshA_related glutamate--cysteine ligase family protein Back     alignment and domain information
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
2d3a_A356 Crystal Structure Of The Maize Glutamine Synthetase 1e-170
3fky_A370 Crystal Structure Of The Glutamine Synthetase Gln1d 1e-104
2uu7_A381 Crystal Structure Of Apo Glutamine Synthetase From 3e-97
2ojw_A384 Crystal Structure Of Human Glutamine Synthetase In 5e-97
3ng0_A473 Crystal Structure Of Glutamine Synthetase From Syne 3e-04
1hto_A477 Crystallographic Structure Of A Relaxed Glutamine S 4e-04
2bvc_A486 Crystal Structure Of Mycobacterium Tuberculosis Glu 5e-04
2gls_A469 Refined Atomic Model Of Glutamine Synthetase At 3.5 7e-04
1f52_A468 Crystal Structure Of Glutamine Synthetase From Salm 8e-04
>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase Complexed With Adp And Methionine Sulfoximine Phosphate Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  594 bits (1532), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/341 (83%), Positives = 308/341 (90%)
Query: 16  TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75
           T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQ
Sbjct: 16  TEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75
Query: 76  AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLL 135
           AIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIFS  +V AEEPWYGIEQEYTLL
Sbjct: 76  AIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLL 135
Query: 136 QKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 195
           QKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMP
Sbjct: 136 QKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMP 195
Query: 196 GQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTK 255
           GQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+
Sbjct: 196 GQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTE 255
Query: 256 SMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASI 315
           SMR +GG+EVIK AIEKL LRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGAS+
Sbjct: 256 SMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASV 315
Query: 316 RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct: 316 RVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18 From The Yeast Saccharomyces Cerevisiae Length = 370 Back     alignment and structure
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog ( Canis Familiaris) Length = 381 Back     alignment and structure
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex With Adp And Phosphate Length = 384 Back     alignment and structure
>pdb|3NG0|A Chain A, Crystal Structure Of Glutamine Synthetase From Synechocystis Sp. Pcc 6803 Length = 473 Back     alignment and structure
>pdb|1HTO|A Chain A, Crystallographic Structure Of A Relaxed Glutamine Synthetase From Mycobacterium Tuberculosis Length = 477 Back     alignment and structure
>pdb|2BVC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine Synthetase In Complex With A Transition State Mimic Length = 486 Back     alignment and structure
>pdb|2GLS|A Chain A, Refined Atomic Model Of Glutamine Synthetase At 3.5 Angstroms Resolution Length = 469 Back     alignment and structure
>pdb|1F52|A Chain A, Crystal Structure Of Glutamine Synthetase From Salmonella Typhimurium Co-Crystallized With Adp Length = 468 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
2d3a_A356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 0.0
2ojw_A384 Glutamine synthetase; amino-acid biosynthesis, lig 0.0
3fky_A370 Glutamine synthetase; beta-grAsp, catalytic domain 0.0
2j9i_A421 Glutamate-ammonia ligase domain-containing protein 2e-11
3o6x_A 729 Glutamine synthetase; type III, beta barrel,dodeca 1e-10
3qaj_A444 Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G 1e-09
3ng0_A473 Glutamine synthetase; GSI, nitrogen metabolism, sy 4e-07
2bvc_A486 Glutamine synthetase 1; ligase, transition state m 1e-06
1f52_A468 Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 1e-06
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Length = 356 Back     alignment and structure
 Score =  583 bits (1505), Expect = 0.0
 Identities = 311/356 (87%), Positives = 341/356 (95%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           M+ L+DL+NLNLS++T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSST
Sbjct: 1   MACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIFS  +V 
Sbjct: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVA 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQKD  WPLGWPIGG+PGPQGPYYCG+GA+K++GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240
           YAGINISGINGEVMPGQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FDPKPI 
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIP 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETAD 300
           GDWNGAGAH NYST+SMR +GG+EVIK AIEKL LRH EHIAAYGEGNERRLTG+HETAD
Sbjct: 241 GDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETAD 300

Query: 301 INTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           INTF WGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct: 301 INTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Length = 384 Back     alignment and structure
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Length = 370 Back     alignment and structure
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Length = 421 Back     alignment and structure
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Length = 729 Back     alignment and structure
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Length = 473 Back     alignment and structure
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1 d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A* 1htq_A* Length = 486 Back     alignment and structure
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Length = 468 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
3fky_A370 Glutamine synthetase; beta-grAsp, catalytic domain 100.0
2d3a_A356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 100.0
2ojw_A384 Glutamine synthetase; amino-acid biosynthesis, lig 100.0
3ng0_A473 Glutamine synthetase; GSI, nitrogen metabolism, sy 100.0
3qaj_A444 Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G 100.0
4hpp_A443 Probable glutamine synthetase; glutamine synthase 100.0
4acf_A486 Glutamine synthetase 1; ligase, nucleotide-binding 100.0
1f52_A468 Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 100.0
2j9i_A421 Glutamate-ammonia ligase domain-containing protein 100.0
3o6x_A 729 Glutamine synthetase; type III, beta barrel,dodeca 100.0
1r8g_A 372 Hypothetical protein YBDK; structural genomics, un 98.25
2gwd_A 449 Glutamate cysteine ligase; disulfide bridges, glut 97.95
3ln6_A 750 Glutathione biosynthesis bifunctional protein GSH; 88.97
3ln7_A 757 Glutathione biosynthesis bifunctional protein GSH; 83.58
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.8e-98  Score=737.13  Aligned_cols=346  Identities=58%  Similarity=1.066  Sum_probs=297.3

Q ss_pred             hhhHHhhcCCCCCCCCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCCcccCcCCCccEEEEeeeeeecC
Q 018434            2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP   81 (356)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PDt~~~~P   81 (356)
                      .++++||++   +|.++++|+++|+|++| .+|||+++++.+.+.++++++|.||||++++..++++|++|+|||++++|
T Consensus        10 ~~~~~~~~l---~~~~i~~v~~~~~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P   85 (370)
T 3fky_A           10 QILQKYLEL---DQRGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP   85 (370)
T ss_dssp             --------------CCCEEEEEEEECSSS-CEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred             HHHHHHhCc---ccCCeEEEEEEEEcCCC-CeEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence            468999999   89999999999999999 99999999999888888889999999999998888999999999999999


Q ss_pred             CCCCCeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCcccc
Q 018434           82 FRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGV  161 (356)
Q Consensus        82 w~~~~~a~v~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (356)
                      |+++++++|+||++++||+|++.|||++|||++++++  |+++++|+|+|||||+.+. .+.+||.++.|.++++||+..
T Consensus        86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~p~~~~p~~~g~yy~~~  162 (370)
T 3fky_A           86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYD-DVYGWPKGGYPAPQGPYYCGV  162 (370)
T ss_dssp             TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTS-SBTTCCTTSBCSCSSSCTTCC
T ss_pred             CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCC-CcccCCCCCccCCCCcccccc
Confidence            9997799999999999999999999999999999886  9999999999999999864 355777666788889998776


Q ss_pred             CcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCC
Q 018434          162 GADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQG  241 (356)
Q Consensus       162 ~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g  241 (356)
                      .....+.++++++++++|+++||+||++|||+|||||||++.|++++++||++++||++||+||++||++|||||||+.|
T Consensus       163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~g  242 (370)
T 3fky_A          163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKG  242 (370)
T ss_dssp             STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSS
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCC
Confidence            65544558999999999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             CCCCceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeeccCC
Q 018434          242 DWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDT  321 (356)
Q Consensus       242 ~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~~  321 (356)
                      |++|||||+|+|||+.++++|++.+++||+||+++|+++|++|+.||||||+|++|+|...+++||.+||+++||||...
T Consensus       243 d~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NRsa~iRIp~~~  322 (370)
T 3fky_A          243 DWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSV  322 (370)
T ss_dssp             SSCCCBEEEEEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSEEECHHH
T ss_pred             CCCcccceeeeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCCceeEEecCCC
Confidence            48999999999999865456788889999999559999999999999999999999995446899999999999999754


Q ss_pred             CCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434          322 EKEGKGYFEDRRPASNMDPYVVTSMIAETTILW  354 (356)
Q Consensus       322 ~~~~~~riE~R~~da~aNPYLalAailaAgl~G  354 (356)
                      ++..++|||+|+||++|||||++|+||+|||+|
T Consensus       323 ~~~~~~riE~R~pda~aNPYLa~Aailaagl~G  355 (370)
T 3fky_A          323 AKEGYGYFEDRRPASNIDPYLVTGIMCETVCGA  355 (370)
T ss_dssp             HHHTCCCEEECCCBTTCCHHHHHHHHHHHHHCC
T ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHHHHHhcC
Confidence            332246999999999999999999999999999
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Back     alignment and structure
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Back     alignment and structure
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Back     alignment and structure
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A* Back     alignment and structure
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Back     alignment and structure
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Back     alignment and structure
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Back     alignment and structure
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A Back     alignment and structure
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 356
d2bvca2374 d.128.1.1 (A:105-478) Glutamine synthetase, C-term 6e-09
d1f52a2368 d.128.1.1 (A:101-468) Glutamine synthetase, C-term 5e-05
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 54.5 bits (130), Expect = 6e-09
 Identities = 47/218 (21%), Positives = 76/218 (34%), Gaps = 16/218 (7%)

Query: 142 PLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINI-SGINGEVMPGQWEF 200
             G P  GY       Y  V  +  +  D+ D      + +G  +  G +     GQ E 
Sbjct: 66  ADGSPNRGYKVRHKGGYFPVAPNDQY-VDLRDKMLTNLINSGFILEKGHHEVGSGGQAEI 124

Query: 201 QVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAH--------ANY 252
                  + A D + + +YI++      G  ++F PKP+ GD               A  
Sbjct: 125 NYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPL 184

Query: 253 STKSMRNDGGFEVIKKAIEKLGLRHSEHIAA---YGEGNERRLTGKHETADINTFKWGVA 309
                   G  +  +  I  L L H+  + A       + +RL      A IN   +   
Sbjct: 185 MYDETGYAGLSDTARHYIGGL-LHHAPSLLAFTNPTVNSYKRLVP-GYEAPINL-VYSQR 241

Query: 310 NRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMI 347
           NR A +R+            E R P S+ +PY+  S +
Sbjct: 242 NRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAM 279
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 368 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
d1f52a2368 Glutamine synthetase, C-terminal domain {Salmonell 100.0
d2bvca2374 Glutamine synthetase, C-terminal domain {Mycobacte 100.0
d1f52a1100 Glutamine synthetase, N-terminal domain {Salmonell 99.65
d2bvca1100 Glutamine synthetase, N-terminal domain {Mycobacte 99.62
d1r8ga_ 368 Carboxylate-amine ligase YbdK {Escherichia coli [T 97.89
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.3e-69  Score=527.22  Aligned_cols=245  Identities=22%  Similarity=0.268  Sum_probs=207.4

Q ss_pred             CCCHHHHHHHHHHhhhhcCCcc--eEeeeeeEEEeccCC---------------CC-------CCCCCCCCCCCCCCCCc
Q 018434          103 PTNKRHAAAKIFSHSDVVAEEP--WYGIEQEYTLLQKDV---------------KW-------PLGWPIGGYPGPQGPYY  158 (356)
Q Consensus       103 ~~~PR~~Lkr~l~~~~~~G~~~--~~g~E~EF~l~~~~~---------------~~-------~~~~~~~~~~~~~~~~~  158 (356)
                      +.|||++|||++++++++|+.+  .+|+|+|||||+...               ..       ..+...+..+..++.||
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCceEEEeceEEEEEeccccccCcCCCccccCCccccccCCCcccCCCCCCccccCCcee
Confidence            4699999999999999999965  559999999997421               00       00000111233455666


Q ss_pred             cccCcchhhHHHHHHHHHHHHHHcCceEeeecCCcC-CCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEeccc
Q 018434          159 CGVGADKAWGRDIVDSHYKACLYAGINISGINGEVM-PGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPK  237 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~g-pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpK  237 (356)
                      +....+.  ..+++++|++.|+.+||+|+++|+|+| ||||||++.|.++|+|||+++++|++||+||++||+.||||||
T Consensus        81 ~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpK  158 (368)
T d1f52a2          81 PVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPK  158 (368)
T ss_dssp             BCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             eeeccch--HHHHHHHHHHHHHhhccCeeeeecccccCCceeecCCCCchHHHHHHHHHHHHHHHHHHHHhcceeeEecc
Confidence            6555543  368999999999999999999999999 6999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCceeeecccCcccCC-------CCch-HHHHHHHHHHHHHHHHhcccccc---cccccCCCCCCCCCCCceee
Q 018434          238 PIQGDWNGAGAHANYSTKSMRN-------DGGF-EVIKKAIEKLGLRHSEHIAAYGE---GNERRLTGKHETADINTFKW  306 (356)
Q Consensus       238 P~~g~~~GsG~H~H~Sl~~~~~-------~~~~-~~~~~~iaGl~l~h~~al~a~~~---nsYkRl~~~~~a~~~~~~~W  306 (356)
                      |+. +.+|||+|+|+|||+.+.       .+++ ..+++||||| |+|++++++|++   |||||++|++|+|  ++++|
T Consensus       159 P~~-~~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGl-l~~~~~~~al~~PtvNSYkRl~~~~~aP--~~~~W  234 (368)
T d1f52a2         159 PMF-GDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAINALANPTTNSYKRLVPGYEAP--VMLAY  234 (368)
T ss_dssp             SST-TSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHHHHHHSCSGGGGGTSSSCSSCC--CEEEE
T ss_pred             cCC-CCCCcceeEEEEeccCCCcccccccccccCHHHHHHHHHH-HHhhHHHHHHHCCCchHHhhccCCCcCC--ceeee
Confidence            999 589999999999997531       1244 3559999999 999999999985   9999999999998  99999


Q ss_pred             ccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434          307 GVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW  354 (356)
Q Consensus       307 G~~NRs~~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G  354 (356)
                      |.+||+++||||.... ++.+|||+|++|++|||||++|++|+||++|
T Consensus       235 g~~NR~a~iRi~~~~~-~~~~riE~R~~da~aNPYL~lAa~laagl~G  281 (368)
T d1f52a2         235 SARNRSASIRIPVVAS-PKARRIEVRFPDPAANPYLCFAALLMAGLDG  281 (368)
T ss_dssp             ESSCTTEEEECCCCSC-GGGCCEEECCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             ccCccccceeecccCC-CccceEEecCCCccHHHHHHHHHHHHHhhhh
Confidence            9999999999996432 2357999999999999999999999999999
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure