Citrus Sinensis ID: 018437

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLVL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHccccccccccEEEEccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHcHHHHccccEEEEEEEEcccccEEEcHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccccEEEEEccccccccccccEEEEEcccccccccEEEEccccccccccccEEcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccHEHHHHHHHHHEEEEcEEEEcccccEEEcHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHHHHccccccEEEEcccccEEccccccccEEEEEcccEEEEEccccccccEccccEEEEEccHHHccHHHEEEEEccccccccEEEEccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvisttetdsreILSSTFASRYVraaiprfkmpdnsmpkeAAYQVINDElmldgnprlnLASFVTTwmepecdkLVMASINknyvdmdeypvtTELQNRCVNMIAHLfntpvaddktavgvgtvGSSEAIMLAGLAFKRKWQQKRkeqgkpydkpnivtganVQVCWEKFARYFEVELKEVkleegyyvmnpvkAVELVDENTICVAAILGstltgefedVKLLHDLLTKkneetgwdtpihvdaasggfiapflypdlewdfrlplvksinvsghKYGLVYAGVGWVvwrtkddlpdeLVFHINylgsdqptftlnfsKGSSQIIAQYYQFIRLGFEEITFTFISSlkvcpflvl
Flexible Loop (DISEMBL)
mvisttetdsreilsstfasryVRAAiprfkmpdnsmPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFntpvaddktAVGVGTVGSSEAIMLAGLAFKRKWQQKRKeqgkpydkpnivtganVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSlkvcpflvl
Low Complexity Region (SEG)
MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFevelkevkleeGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLVL
Disordered region (IsUnstruct)
*****************FASRYVRAAIPR***********AAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ***********KPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV*
Disordered Region (DISOPRED)
******************ASRYVRAAI*RF*M***SMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLVL
Disordered Region (DISEMBL)
************ILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK**********PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLVL
Disordered Region (DISPRO)
*******************SRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLVL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
P54767	502	Glutamate decarboxylase O	N/A	no	0.949	0.673	0.870	1e-180
Q07346	500	Glutamate decarboxylase O	N/A	no	0.949	0.676	0.866	1e-179
Q9ZPS3	493	Glutamate decarboxylase 4	yes	no	0.949	0.685	0.860	1e-178
Q9LSH2	494	Glutamate decarboxylase 5	no	no	0.946	0.682	0.869	1e-178
Q42521	502	Glutamate decarboxylase 1	no	no	0.949	0.673	0.849	1e-178
Q9ZPS4	500	Glutamate decarboxylase 3	no	no	0.949	0.676	0.825	1e-171
Q42472	494	Glutamate decarboxylase 2	no	no	0.946	0.682	0.822	1e-171
P69912	466	Glutamate decarboxylase b	yes	no	0.974	0.744	0.487	1e-96
P69910	466	Glutamate decarboxylase b	N/A	no	0.974	0.744	0.487	1e-96
P69911	466	Glutamate decarboxylase b	N/A	no	0.974	0.744	0.487	1e-96

>sp|P54767|DCE_SOLLC Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1

 Score =  631 bits (1627), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 295/339 (87%), Positives = 321/339 (94%), Gaps = 1/339 (0%)

Query: 1   MVISTTET-DSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLN 59
           MV++TT   DS E L  TFASRYV+  +P+FKMP  SMPKEAAYQ++NDELMLDGNPRLN
Sbjct: 1   MVLTTTSIRDSEESLHCTFASRYVQEPLPKFKMPKKSMPKEAAYQIVNDELMLDGNPRLN 60

Query: 60  LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV 119
           LASFV+TWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNM+AHLF+ PV DD+TAV
Sbjct: 61  LASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMLAHLFHAPVGDDETAV 120

Query: 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELK 179
           GVGTVGSSEAIMLAGLAFKRKWQ KRK +GKP+DKPNIVTGANVQVCWEKFARYFEVELK
Sbjct: 121 GVGTVGSSEAIMLAGLAFKRKWQSKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELK 180

Query: 180 EVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
           EVKL+EGYYVM+P KAVE+VDENTICVAAILGSTLTGEFEDVKLL++LLTKKN+ETGW+T
Sbjct: 181 EVKLKEGYYVMDPAKAVEIVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWET 240

Query: 240 PIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299
           PIHVDAASGGFIAPFL+PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV+WR+K+DLPDE
Sbjct: 241 PIHVDAASGGFIAPFLWPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRSKEDLPDE 300

Query: 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           LVFHINYLGSDQPTFTLNFSKGS QIIAQYYQ IRLGFE
Sbjct: 301 LVFHINYLGSDQPTFTLNFSKGSYQIIAQYYQLIRLGFE 339

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.
Solanum lycopersicum (taxid: 4081)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|Q07346|DCE_PETHY Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1

 Score =  628 bits (1620), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 293/338 (86%), Positives = 315/338 (93%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T + S   + STFASRYVR ++PRFKMPDNS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSKTVSQSDVSIHSTFASRYVRTSLPRFKMPDNSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ D +TAVG
Sbjct: 61  ASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ K K QGKP DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+P KAVE+VDENTICVAAILGSTL GEFEDVK L+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWR KDDLPDEL
Sbjct: 241 IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKDDLPDEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG+E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYE 338

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Petunia hybrida (taxid: 4102)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9ZPS3|DCE4_ARATH Glutamate decarboxylase 4 OS=Arabidopsis thaliana GN=GAD4 PE=2 SV=1

 Score =  625 bits (1611), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 291/338 (86%), Positives = 316/338 (93%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T ++S   + STFASRYVR ++PRF+MP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSKTVSESDVSIHSTFASRYVRNSLPRFEMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVNMIA LFN P+ D + AVG
Sbjct: 61  ASFVTTWMEPECDKLMMESINKNYVDMDEYPVTTELQNRCVNMIARLFNAPLGDGEAAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKR+WQ KRK QG PYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRQWQNKRKAQGLPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           V L E YYVM+PVKAVE+VDENTICVAAILGSTLTGEFEDVKLL+DLL +KN++TGWDTP
Sbjct: 181 VNLREDYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNDLLVEKNKQTGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWRTK DLPDEL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRTKTDLPDEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLGFE
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE 338

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9LSH2|DCE5_ARATH Glutamate decarboxylase 5 OS=Arabidopsis thaliana GN=GAD5 PE=2 SV=1

 Score =  624 bits (1608), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 294/338 (86%), Positives = 315/338 (93%), Gaps = 1/338 (0%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV++T  +DS E L STFASRYVRA +PRFKMPD+ MPK+AAYQVINDELMLDGNPRLNL
Sbjct: 1   MVLATN-SDSDEHLHSTFASRYVRAVVPRFKMPDHCMPKDAAYQVINDELMLDGNPRLNL 59

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M S+NKNYVDMDEYPVTTELQNRCVNMIA+LF+ PV +D+ A+G
Sbjct: 60  ASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIANLFHAPVGEDEAAIG 119

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
            GTVGSSEAIMLAGLAFKRKWQ +RK QG P DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 120 CGTVGSSEAIMLAGLAFKRKWQHRRKAQGLPIDKPNIVTGANVQVCWEKFARYFEVELKE 179

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL E YYVM+P KAVE+VDENTICVAAILGSTLTGEFEDVK L+DLL +KN ETGW+TP
Sbjct: 180 VKLSEDYYVMDPAKAVEMVDENTICVAAILGSTLTGEFEDVKQLNDLLAEKNAETGWETP 239

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYPDLEWDFRLP VKSINVSGHKYGLVYAGVGWVVWRTKDDLP+EL
Sbjct: 240 IHVDAASGGFIAPFLYPDLEWDFRLPWVKSINVSGHKYGLVYAGVGWVVWRTKDDLPEEL 299

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           VFHINYLG+DQPTFTLNFSKGSSQIIAQYYQFIRLGFE
Sbjct: 300 VFHINYLGADQPTFTLNFSKGSSQIIAQYYQFIRLGFE 337

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q42521|DCE1_ARATH Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2

 Score =  622 bits (1605), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 287/338 (84%), Positives = 317/338 (93%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S   ++S   + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct: 61  ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHE 338

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9ZPS4|DCE3_ARATH Glutamate decarboxylase 3 OS=Arabidopsis thaliana GN=GAD3 PE=2 SV=1

 Score =  602 bits (1552), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 279/338 (82%), Positives = 309/338 (91%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T + S + + STFASRYVR +I RF++P NS+PKEAAYQ+INDEL  DGNPRLNL
Sbjct: 1   MVLSKTASKSDDSIHSTFASRYVRNSISRFEIPKNSIPKEAAYQIINDELKFDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M SINKN V+MD+YPVTT+LQNRCVNMIA LFN P+ D + A+G
Sbjct: 61  ASFVTTWMEPECDKLMMESINKNNVEMDQYPVTTDLQNRCVNMIARLFNAPLGDGEAAIG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEA+MLAGLAFKR+WQ KRK  G PYD+PNIVTGAN+QVC EKFARYFEVELKE
Sbjct: 121 VGTVGSSEAVMLAGLAFKRQWQNKRKALGLPYDRPNIVTGANIQVCLEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+P KAVE+VDENTICV AILGSTLTGEFEDVKLL+DLL +KN++TGWDTP
Sbjct: 181 VKLREGYYVMDPDKAVEMVDENTICVVAILGSTLTGEFEDVKLLNDLLVEKNKKTGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWRTK DLPDEL
Sbjct: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRTKTDLPDEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLGFE
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE 338

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q42472|DCE2_ARATH Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1

 Score =  600 bits (1546), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 278/338 (82%), Positives = 309/338 (91%), Gaps = 1/338 (0%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV++ T T+  E + + F SRYVR  +P++++ +NS+PK+AAYQ+I DELMLDGNPRLNL
Sbjct: 1   MVLTKTATND-ESVCTMFGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNL 59

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVN+IA LFN P+ + +TAVG
Sbjct: 60  ASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEESETAVG 119

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 120 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 179

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           V L EGYYVM+P KA E+VDENTICVAAILGSTL GEFEDVK L+DLL KKNEETGW+TP
Sbjct: 180 VNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKKNEETGWNTP 239

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWR  +DLP+EL
Sbjct: 240 IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEEL 299

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFE
Sbjct: 300 IFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFE 337

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P69912|DCEB_SHIFL Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=3 SV=1

 Score =  353 bits (905), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/349 (48%), Positives = 233/349 (66%), Gaps = 2/349 (0%)

Query: 8   TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
           TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct: 7   TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66

Query: 67  WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
           W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct: 67  WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126

Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG 186
           SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185

Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
              M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245

Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
           SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305

Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV 355
           LG    TF +NFS+ + Q+IAQYY+F+RLG E  T    +S +V  +L 
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLA 354

Converts glutamate to gamma-aminobutyrate (GABA), consuming one intracellular proton in the reaction. The gad system helps to maintain a near-neutral intracellular pH when cells are exposed to extremely acidic conditions. The ability to survive transit through the acidic conditions of the stomach is essential for successful colonization of the mammalian host by commensal and pathogenic bacteria.

Shigella flexneri (taxid: 623)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P69910|DCEB_ECOLI Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1

 Score =  353 bits (905), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/349 (48%), Positives = 233/349 (66%), Gaps = 2/349 (0%)

Query: 8   TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
           TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct: 7   TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66

Query: 67  WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
           W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct: 67  WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126

Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG 186
           SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185

Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
              M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245

Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
           SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305

Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV 355
           LG    TF +NFS+ + Q+IAQYY+F+RLG E  T    +S +V  +L 
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLA 354

Converts glutamate to gamma-aminobutyrate (GABA), consuming one intracellular proton in the reaction. The gad system helps to maintain a near-neutral intracellular pH when cells are exposed to extremely acidic conditions. The ability to survive transit through the acidic conditions of the stomach is essential for successful colonization of the mammalian host by commensal and pathogenic bacteria.

Escherichia coli (strain K12) (taxid: 83333)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P69911|DCEB_ECO57 Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=3 SV=1

 Score =  353 bits (905), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/349 (48%), Positives = 233/349 (66%), Gaps = 2/349 (0%)

Query: 8   TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
           TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct: 7   TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66

Query: 67  WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
           W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct: 67  WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126

Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG 186
           SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185

Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
              M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245

Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
           SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305

Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV 355
           LG    TF +NFS+ + Q+IAQYY+F+RLG E  T    +S +V  +L 
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLA 354

Converts glutamate to gamma-aminobutyrate (GABA), consuming one intracellular proton in the reaction. The gad system helps to maintain a near-neutral intracellular pH when cells are exposed to extremely acidic conditions. The ability to survive transit through the acidic conditions of the stomach is essential for successful colonization of the mammalian host by commensal and pathogenic bacteria.

Escherichia coli O157:H7 (taxid: 83334)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
224120428	501	predicted protein [Populus trichocarpa]	0.949	0.674	0.902	0.0
255573511	529	glutamate decarboxylase, putative [Ricin	0.949	0.638	0.896	0.0
225462892	505	PREDICTED: glutamate decarboxylase-like	0.949	0.669	0.890	0.0
255575222	498	glutamate decarboxylase, putative [Ricin	0.949	0.678	0.872	0.0
357163796	488	PREDICTED: glutamate decarboxylase-like	0.949	0.692	0.873	1e-179
226532026	489	LOC100284551 [Zea mays] gi|195642944|gb|	0.949	0.691	0.867	1e-179
296088812	487	unnamed protein product [Vitis vinifera]	0.949	0.694	0.872	1e-179
350537523	502	glutamate decarboxylase [Solanum lycoper	0.949	0.673	0.870	1e-178
70609690	494	glutamate decarboxylase [Citrus sinensis	0.949	0.684	0.863	1e-178
224079722	498	predicted protein [Populus trichocarpa]	0.949	0.678	0.855	1e-178

>gi|224120428|ref|XP_002318327.1| predicted protein [Populus trichocarpa] gi|222859000|gb|EEE96547.1| predicted protein [Populus trichocarpa]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/338 (90%), Positives = 324/338 (95%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MVIST  TDS E L STFASRYVR A+PRFKMP+NSMPK+AAYQVINDELMLDGNPRLNL
Sbjct: 1   MVISTAATDSDENLYSTFASRYVRTALPRFKMPENSMPKDAAYQVINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPEC+ L+MASINKNYVDMDEYPVTTELQNRCVN+IAHLFN PV + +TAVG
Sbjct: 61  ASFVTTWMEPECNDLIMASINKNYVDMDEYPVTTELQNRCVNIIAHLFNAPVGEKETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+PVKAVE+VDENTICVAAILGSTLTGEFEDVKLL+DLL+KKN+ETGW+TP
Sbjct: 181 VKLTEGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNDLLSKKNKETGWNTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPF++PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK+DLPDEL
Sbjct: 241 IHVDAASGGFIAPFIWPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKEDLPDEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLGSDQPTFTLNFSKGS QIIAQYYQFIRLGFE
Sbjct: 301 IFHINYLGSDQPTFTLNFSKGSGQIIAQYYQFIRLGFE 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573511|ref|XP_002527680.1| glutamate decarboxylase, putative [Ricinus communis] gi|223532911|gb|EEF34679.1| glutamate decarboxylase, putative [Ricinus communis]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/338 (89%), Positives = 324/338 (95%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MVISTT TDS E+L STFASRYVR  +PRFKMP+ SMPKEAAYQVINDELMLDGNPRLNL
Sbjct: 40  MVISTTITDSDEVLHSTFASRYVRTPVPRFKMPEKSMPKEAAYQVINDELMLDGNPRLNL 99

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPEC+ L+MASINKNYVDMDEYPVTTELQ+RCVNMIAH+F+ PV DD+TAVG
Sbjct: 100 ASFVTTWMEPECNNLIMASINKNYVDMDEYPVTTELQDRCVNMIAHMFHAPVGDDETAVG 159

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KR  +GKP DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 160 VGTVGSSEAIMLAGLAFKRKWQHKRIAEGKPSDKPNIVTGANVQVCWEKFARYFEVELKE 219

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL+EGYYVM+PVKAVE+VDENTIC+AAILGSTLTGEFEDVKLL +LLTK+NEETGW+TP
Sbjct: 220 VKLKEGYYVMDPVKAVEMVDENTICIAAILGSTLTGEFEDVKLLSELLTKRNEETGWNTP 279

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPF+YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK+DLP+EL
Sbjct: 280 IHVDAASGGFIAPFVYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKEDLPEEL 339

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE
Sbjct: 340 IFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462892|ref|XP_002263081.1| PREDICTED: glutamate decarboxylase-like [Vitis vinifera]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/338 (89%), Positives = 324/338 (95%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MVISTT +DS E L +TFASRYVR  +P+FKMP+ S+PKEAA+Q+I+DELMLDGNPRLNL
Sbjct: 1   MVISTTISDSSEHLHATFASRYVRDPLPKFKMPERSIPKEAAFQIISDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWME ECDKL+MAS+NKNYVDMDEYPVTTELQNRCVNMIAHLFN PV +++TA+G
Sbjct: 61  ASFVTTWMEEECDKLIMASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPVGENETAIG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQQKRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+PVKAVE+VDENTICVAAILGSTLTGEFEDVKLL++LLTKKN ETGW TP
Sbjct: 181 VKLREGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNTETGWGTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFL+PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP+EL
Sbjct: 241 IHVDAASGGFIAPFLHPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE
Sbjct: 301 IFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575222|ref|XP_002528515.1| glutamate decarboxylase, putative [Ricinus communis] gi|223532075|gb|EEF33884.1| glutamate decarboxylase, putative [Ricinus communis]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 295/338 (87%), Positives = 323/338 (95%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T ++S   + STFASRYVRA++PRFKMP++S+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSKTASESDVSVHSTFASRYVRASLPRFKMPESSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+MASINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ D +TAVG
Sbjct: 61  ASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL +GYYVM+PVKAVE+VDENTICVAAILGSTL GEFEDVKLL+DLLT+KN++TGWDTP
Sbjct: 181 VKLRDGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKQTGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR KDDLPDEL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKDDLPDEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG+E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYE 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357163796|ref|XP_003579849.1| PREDICTED: glutamate decarboxylase-like [Brachypodium distachyon]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 296/339 (87%), Positives = 317/339 (93%), Gaps = 1/339 (0%)

Query: 1   MVISTTETDSRE-ILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLN 59
           M +S  +T+  E ++SSTFASRYVRAA+PRFK+P+ S+PKEAAYQ+INDELMLDGNPRLN
Sbjct: 1   MALSRAQTNHGESLISSTFASRYVRAALPRFKIPEQSIPKEAAYQIINDELMLDGNPRLN 60

Query: 60  LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV 119
           LASFVTTWMEPECDKL+  SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ DD+TAV
Sbjct: 61  LASFVTTWMEPECDKLIQNSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIGDDETAV 120

Query: 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELK 179
           GVGTVGSSEAIMLAGLAFKRKWQ K K  GKP+DKPNIVTGANVQVCWEKFARYFEVELK
Sbjct: 121 GVGTVGSSEAIMLAGLAFKRKWQNKMKAAGKPFDKPNIVTGANVQVCWEKFARYFEVELK 180

Query: 180 EVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
           EVKL EGYYVM+P KAVELVDENTICVAAILGSTL GEFEDVK+L+DLL  KN ETGWDT
Sbjct: 181 EVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKMLNDLLVAKNAETGWDT 240

Query: 240 PIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299
           PIHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE
Sbjct: 241 PIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 300

Query: 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           L+FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFE
Sbjct: 301 LIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFE 339

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226532026|ref|NP_001150918.1| LOC100284551 [Zea mays] gi|195642944|gb|ACG40940.1| glutamate decarboxylase [Zea mays] gi|414587022|tpg|DAA37593.1| TPA: glutamate decarboxylase [Zea mays]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 295/340 (86%), Positives = 317/340 (93%), Gaps = 2/340 (0%)

Query: 1   MVISTTETDSRE--ILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRL 58
           M +STT T++ E  +  STFASRYVR A+PRFK+P+ S+PKEAAYQ+INDELMLDGNPRL
Sbjct: 1   MALSTTNTNAAESQLHCSTFASRYVRTALPRFKIPEQSIPKEAAYQIINDELMLDGNPRL 60

Query: 59  NLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA 118
           NLASFVTTWMEPECDKL+ +SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ DD+TA
Sbjct: 61  NLASFVTTWMEPECDKLIQSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIGDDETA 120

Query: 119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL 178
           VGVGTVGSSEAIMLAGLAFKRKWQ K K  GKPYDKPNIVTGANVQVCWEKFARYFEVEL
Sbjct: 121 VGVGTVGSSEAIMLAGLAFKRKWQNKMKAAGKPYDKPNIVTGANVQVCWEKFARYFEVEL 180

Query: 179 KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD 238
           KEVKL+EGYYVM+P KA E+VDENTICVAAILGSTL GEFEDVKLL DLLT KN ETGWD
Sbjct: 181 KEVKLKEGYYVMDPEKAAEMVDENTICVAAILGSTLNGEFEDVKLLSDLLTAKNAETGWD 240

Query: 239 TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD 298
           TPIHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAGVGWV+WR+K+DLPD
Sbjct: 241 TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRSKEDLPD 300

Query: 299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           EL+FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFE
Sbjct: 301 ELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFE 340

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088812|emb|CBI38262.3| unnamed protein product [Vitis vinifera]

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 295/338 (87%), Positives = 319/338 (94%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MVISTT +DS E L +TFASRYVR  +P+FKMP+ S+PKEAA+Q+I+DELMLDGNPRLNL
Sbjct: 1   MVISTTISDSSEHLHATFASRYVRDPLPKFKMPERSIPKEAAFQIISDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWME ECDKL+MAS+NKNYVDMDEYP+     NRCVNMIAHLFN PV +++TA+G
Sbjct: 61  ASFVTTWMEEECDKLIMASVNKNYVDMDEYPLVGPHHNRCVNMIAHLFNAPVGENETAIG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQQKRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+PVKAVE+VDENTICVAAILGSTLTGEFEDVKLL++LLTKKN ETGW TP
Sbjct: 181 VKLREGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNTETGWGTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFL+PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP+EL
Sbjct: 241 IHVDAASGGFIAPFLHPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE
Sbjct: 301 IFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537523|ref|NP_001234041.1| glutamate decarboxylase [Solanum lycopersicum] gi|1706318|sp|P54767.1|DCE_SOLLC RecName: Full=Glutamate decarboxylase; Short=GAD; AltName: Full=ERT D1 gi|995555|emb|CAA56812.1| unnamed protein product [Solanum lycopersicum]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 295/339 (87%), Positives = 321/339 (94%), Gaps = 1/339 (0%)

Query: 1   MVISTTET-DSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLN 59
           MV++TT   DS E L  TFASRYV+  +P+FKMP  SMPKEAAYQ++NDELMLDGNPRLN
Sbjct: 1   MVLTTTSIRDSEESLHCTFASRYVQEPLPKFKMPKKSMPKEAAYQIVNDELMLDGNPRLN 60

Query: 60  LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV 119
           LASFV+TWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNM+AHLF+ PV DD+TAV
Sbjct: 61  LASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMLAHLFHAPVGDDETAV 120

Query: 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELK 179
           GVGTVGSSEAIMLAGLAFKRKWQ KRK +GKP+DKPNIVTGANVQVCWEKFARYFEVELK
Sbjct: 121 GVGTVGSSEAIMLAGLAFKRKWQSKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELK 180

Query: 180 EVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
           EVKL+EGYYVM+P KAVE+VDENTICVAAILGSTLTGEFEDVKLL++LLTKKN+ETGW+T
Sbjct: 181 EVKLKEGYYVMDPAKAVEIVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWET 240

Query: 240 PIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299
           PIHVDAASGGFIAPFL+PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV+WR+K+DLPDE
Sbjct: 241 PIHVDAASGGFIAPFLWPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRSKEDLPDE 300

Query: 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           LVFHINYLGSDQPTFTLNFSKGS QIIAQYYQ IRLGFE
Sbjct: 301 LVFHINYLGSDQPTFTLNFSKGSYQIIAQYYQLIRLGFE 339

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|70609690|gb|AAZ05070.1| glutamate decarboxylase [Citrus sinensis]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 292/338 (86%), Positives = 320/338 (94%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T ++S E + STFASRYVR ++PRF MP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+MA+INKNYVDMDEYPVTTELQNRCVN+IA LFN P+ D +TAVG
Sbjct: 61  ASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP+DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+P KAVE+VDENTICVAAILGSTL GEFEDVKLL+DLLT+KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLGFE
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE 338

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079722|ref|XP_002305927.1| predicted protein [Populus trichocarpa] gi|222848891|gb|EEE86438.1| predicted protein [Populus trichocarpa]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 289/338 (85%), Positives = 320/338 (94%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T ++S   + STFASRYVRA++PRFKMP+NS+PKEAA+Q+INDELMLDGNPRLNL
Sbjct: 1   MVLSKTASESDVSVHSTFASRYVRASLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+MASINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ D +TAVG
Sbjct: 61  ASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL +GYYVM+P KAV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ TGWDTP
Sbjct: 181 VKLSDGYYVMDPEKAVQMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKSTGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG+E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYE 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2041130	493	GAD4 "glutamate decarboxylase	0.949	0.685	0.834	1.3e-155
TAIR|locus:2089779	494	GAD5 "glutamate decarboxylase	0.946	0.682	0.840	3.5e-155
TAIR|locus:2167240	502	GAD "glutamate decarboxylase"	0.949	0.673	0.819	1.9e-154
TAIR|locus:2009704	494	GAD2 "glutamate decarboxylase	0.946	0.682	0.795	2.3e-149
TAIR|locus:2041120	500	GAD3 "glutamate decarboxylase	0.949	0.676	0.795	1.6e-148
ASPGD|ASPL0000028885	515	AN5447 [Emericella nidulans (t	0.971	0.671	0.560	9.5e-105
UNIPROTKB|G4MR06	517	MGG_02378 "Glutamate decarboxy	0.910	0.626	0.584	1.4e-101
ASPGD|ASPL0000065145	521	AN7278 [Emericella nidulans (t	0.893	0.610	0.555	1.6e-95
UNIPROTKB|P69910	466	gadB "glutamate decarboxylase	0.971	0.742	0.477	1.1e-85
UNIPROTKB|P69908	466	gadA "glutamate decarboxylase	0.971	0.742	0.477	1.1e-85

TAIR|locus:2041130 GAD4 "glutamate decarboxylase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1517 (539.1 bits), Expect = 1.3e-155, P = 1.3e-155
 Identities = 282/338 (83%), Positives = 307/338 (90%)

Query:     1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
             MV+S T ++S   + STFASRYVR ++PRF+MP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct:     1 MVLSKTVSESDVSIHSTFASRYVRNSLPRFEMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query:    61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
             ASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVNMIA LFN P+ D + AVG
Sbjct:    61 ASFVTTWMEPECDKLMMESINKNYVDMDEYPVTTELQNRCVNMIARLFNAPLGDGEAAVG 120

Query:   121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
             VGTVGSSEAIMLAGLAFKR+WQ KRK QG PYDKPNIVTGANVQVCWEKFARYF      
Sbjct:   121 VGTVGSSEAIMLAGLAFKRQWQNKRKAQGLPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query:   181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                   YYVM+PVKAVE+VDENTICVAAILGSTLTGEFEDVKLL+DLL +KN++TGWDTP
Sbjct:   181 VNLREDYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNDLLVEKNKQTGWDTP 240

Query:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
             IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWRTK DLPDEL
Sbjct:   241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRTKTDLPDEL 300

Query:   301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
             +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLGFE
Sbjct:   301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE 338

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2089779 GAD5 "glutamate decarboxylase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1513 (537.7 bits), Expect = 3.5e-155, P = 3.5e-155
 Identities = 284/338 (84%), Positives = 305/338 (90%)

Query:     1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
             MV++T  +DS E L STFASRYVRA +PRFKMPD+ MPK+AAYQVINDELMLDGNPRLNL
Sbjct:     1 MVLATN-SDSDEHLHSTFASRYVRAVVPRFKMPDHCMPKDAAYQVINDELMLDGNPRLNL 59

Query:    61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
             ASFVTTWMEPECDKL+M S+NKNYVDMDEYPVTTELQNRCVNMIA+LF+ PV +D+ A+G
Sbjct:    60 ASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIANLFHAPVGEDEAAIG 119

Query:   121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
              GTVGSSEAIMLAGLAFKRKWQ +RK QG P DKPNIVTGANVQVCWEKFARYF      
Sbjct:   120 CGTVGSSEAIMLAGLAFKRKWQHRRKAQGLPIDKPNIVTGANVQVCWEKFARYFEVELKE 179

Query:   181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                   YYVM+P KAVE+VDENTICVAAILGSTLTGEFEDVK L+DLL +KN ETGW+TP
Sbjct:   180 VKLSEDYYVMDPAKAVEMVDENTICVAAILGSTLTGEFEDVKQLNDLLAEKNAETGWETP 239

Query:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
             IHVDAASGGFIAPFLYPDLEWDFRLP VKSINVSGHKYGLVYAGVGWVVWRTKDDLP+EL
Sbjct:   240 IHVDAASGGFIAPFLYPDLEWDFRLPWVKSINVSGHKYGLVYAGVGWVVWRTKDDLPEEL 299

Query:   301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
             VFHINYLG+DQPTFTLNFSKGSSQIIAQYYQFIRLGFE
Sbjct:   300 VFHINYLGADQPTFTLNFSKGSSQIIAQYYQFIRLGFE 337

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2167240 GAD "glutamate decarboxylase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1506 (535.2 bits), Expect = 1.9e-154, P = 1.9e-154
 Identities = 277/338 (81%), Positives = 307/338 (90%)

Query:     1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
             MV+S   ++S   + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct:     1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query:    61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
             ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct:    61 ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120

Query:   121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
             VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYF      
Sbjct:   121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query:   181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                  GYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct:   181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240

Query:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
             IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR K+DLP+EL
Sbjct:   241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300

Query:   301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
             +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG E
Sbjct:   301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHE 338

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA;IDA

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA;TAS;IPI

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2009704 GAD2 "glutamate decarboxylase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
 Identities = 269/338 (79%), Positives = 300/338 (88%)

Query:     1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
             MV++ T T+  E + + F SRYVR  +P++++ +NS+PK+AAYQ+I DELMLDGNPRLNL
Sbjct:     1 MVLTKTATND-ESVCTMFGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNL 59

Query:    61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
             ASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVN+IA LFN P+ + +TAVG
Sbjct:    60 ASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEESETAVG 119

Query:   121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
             VGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYF      
Sbjct:   120 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 179

Query:   181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                  GYYVM+P KA E+VDENTICVAAILGSTL GEFEDVK L+DLL KKNEETGW+TP
Sbjct:   180 VNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKKNEETGWNTP 239

Query:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
             IHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWR  +DLP+EL
Sbjct:   240 IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEEL 299

Query:   301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
             +FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFE
Sbjct:   300 IFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFE 337

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA;IDA

GO:0006536 "glutamate metabolic process" evidence=IEA;IDA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=TAS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0006807 "nitrogen compound metabolic process" evidence=TAS

TAIR|locus:2041120 GAD3 "glutamate decarboxylase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1450 (515.5 bits), Expect = 1.6e-148, P = 1.6e-148
 Identities = 269/338 (79%), Positives = 299/338 (88%)

Query:     1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
             MV+S T + S + + STFASRYVR +I RF++P NS+PKEAAYQ+INDEL  DGNPRLNL
Sbjct:     1 MVLSKTASKSDDSIHSTFASRYVRNSISRFEIPKNSIPKEAAYQIINDELKFDGNPRLNL 60

Query:    61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
             ASFVTTWMEPECDKL+M SINKN V+MD+YPVTT+LQNRCVNMIA LFN P+ D + A+G
Sbjct:    61 ASFVTTWMEPECDKLMMESINKNNVEMDQYPVTTDLQNRCVNMIARLFNAPLGDGEAAIG 120

Query:   121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
             VGTVGSSEA+MLAGLAFKR+WQ KRK  G PYD+PNIVTGAN+QVC EKFARYF      
Sbjct:   121 VGTVGSSEAVMLAGLAFKRQWQNKRKALGLPYDRPNIVTGANIQVCLEKFARYFEVELKE 180

Query:   181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                  GYYVM+P KAVE+VDENTICV AILGSTLTGEFEDVKLL+DLL +KN++TGWDTP
Sbjct:   181 VKLREGYYVMDPDKAVEMVDENTICVVAILGSTLTGEFEDVKLLNDLLVEKNKKTGWDTP 240

Query:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
             IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWRTK DLPDEL
Sbjct:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRTKTDLPDEL 300

Query:   301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
             +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLGFE
Sbjct:   301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE 338

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

ASPGD|ASPL0000028885 AN5447 [Emericella nidulans (taxid:162425)]

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 198/353 (56%), Positives = 253/353 (71%)

Query:     3 ISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLAS 62
             + T E D  +  ++ + +R+    +P  +MPD  MP+E AY++I DEL LDGNP LNLAS
Sbjct:    25 LDTIEED--DYSATVYGTRFATQQLPHAEMPDREMPREVAYRMIKDELSLDGNPMLNLAS 82

Query:    63 FVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPV-ADDKTAVGV 121
             FVTT+ME E +KL+  S +KN++D +EYP + E+QNRCVNMIA LFN P  +D    +G 
Sbjct:    83 FVTTYMEDEAEKLMAESFSKNFIDYEEYPQSAEIQNRCVNMIARLFNAPTDSDTDHPMGT 142

Query:   122 GTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXX 181
              TVGSSEAIML  LA K++WQ KRK +GK Y +PNIV  + VQVCWEK ARYF       
Sbjct:   143 STVGSSEAIMLGTLAMKKRWQNKRKAEGKDYSRPNIVMNSAVQVCWEKAARYFDVEERYV 202

Query:   182 XXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPI 241
                   YV++P +AV+LVDENTI + AILG+T TGE+EDVK ++DLL     E G D PI
Sbjct:   203 YCTEERYVIDPQQAVDLVDENTIGICAILGTTYTGEYEDVKAINDLLV----ERGLDCPI 258

Query:   242 HVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301
             HVDAASGGF+APF++P L+WDFRL  V SINVSGHKYGLVY GVGWVVWR+ + LP EL+
Sbjct:   259 HVDAASGGFVAPFIHPTLQWDFRLEKVVSINVSGHKYGLVYPGVGWVVWRSPEFLPKELI 318

Query:   302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL 354
             F+INYLG++Q +FTLNFSKG+S +I QYYQ IRLG        ++  ++  +L
Sbjct:   319 FNINYLGAEQASFTLNFSKGASHVIGQYYQMIRLGKRGYRSVMVNITRIADYL 371

GO:0006540 "glutamate decarboxylation to succinate" evidence=RCA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA;RCA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0006538 "glutamate catabolic process" evidence=IEA

UNIPROTKB|G4MR06 MGG_02378 "Glutamate decarboxylase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
 Identities = 193/330 (58%), Positives = 242/330 (73%)

Query:     9 DSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWM 68
             D  +  +S + SR+    +P+ +M +N MPKE AY++I DEL LDGNP LNLASFVTT+M
Sbjct:    31 DEDKFTTSVYGSRFAIDDLPKHEMAENEMPKEVAYRMIKDELSLDGNPMLNLASFVTTYM 90

Query:    69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPV--ADDKTAVGVGTVGS 126
             E E +KL+  S +KN++D +EYP + ++QNRCV MI  LFN PV  ++   AVG   VGS
Sbjct:    91 EEEAEKLMADSFSKNFIDYEEYPQSADIQNRCVAMIGRLFNAPVGASEGVGAVGTSCVGS 150

Query:   127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
             SEAIMLA LA K++W+ KR  +GK  DKPN++  + VQVCWEK  RYF            
Sbjct:   151 SEAIMLAVLAMKKRWKNKRLAEGKSVDKPNLIMSSAVQVCWEKATRYFEVEEKLVYCSPD 210

Query:   187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
              YV++P + V+LVDENTI +  ILG+T TGE+EDV+ ++DLL     E G +TPIHVDAA
Sbjct:   211 RYVIDPKETVDLVDENTIGICVILGTTYTGEYEDVRAVNDLLN----ERGLETPIHVDAA 266

Query:   247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
             SGGF+APF+ PDLEWDFR   V SINVSGHKYGLVY GVGWVVWR+ + LP ELVF+INY
Sbjct:   267 SGGFVAPFVVPDLEWDFRCDRVVSINVSGHKYGLVYPGVGWVVWRSAEFLPQELVFNINY 326

Query:   307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLG 336
             LG+DQ +FTLNFSKG+SQ+I QYYQ IRLG
Sbjct:   327 LGADQASFTLNFSKGASQVIGQYYQLIRLG 356

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000065145 AN7278 [Emericella nidulans (taxid:162425)]

 Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
 Identities = 186/335 (55%), Positives = 234/335 (69%)

Query:    15 SSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDK 74
             +  + ++Y    +P + M DN MP + A Q+I DEL LDGNP LN+ASFVTT+MEP+ + 
Sbjct:    31 AGVYGTKYAAEELPLYVMNDNGMPPDVAEQMIRDELSLDGNPLLNMASFVTTYMEPQVET 90

Query:    75 LVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKT-------------AVGV 121
             L+ A++ KN++D ++YP +  +Q RCVNMIA LFN P   +               A+G 
Sbjct:    91 LMAAAMRKNFIDFEQYPQSARMQTRCVNMIADLFNAPTNQESKEGTEHGESEGAEGAMGT 150

Query:   122 GTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXX 181
              TVGSSEAIMLA LA K+ W +KR + GK    PNI+  + VQVCWEK ARYF       
Sbjct:   151 STVGSSEAIMLALLAMKKTWHKKRSDAGKDTSHPNIIMNSAVQVCWEKAARYFDVEERYC 210

Query:   182 XXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPI 241
                   YV++PV+AVELVDENTI + AI+G+T TG +EDVK ++DLL ++N     D PI
Sbjct:   211 YCTDDRYVIDPVQAVELVDENTIGICAIMGTTYTGHYEDVKAINDLLVQRNI----DCPI 266

Query:   242 HVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301
             HVDAASGGF+APF+ P+L WDFRL  V SINVSGHKYGLVY GVGW+ WR+ + LP ELV
Sbjct:   267 HVDAASGGFVAPFICPELVWDFRLEKVVSINVSGHKYGLVYPGVGWIFWRSPEYLPRELV 326

Query:   302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG 336
             F+INYLGS+Q TFTLNFSKG+S II QYYQ IRLG
Sbjct:   327 FNINYLGSEQATFTLNFSKGASHIIGQYYQLIRLG 361

GO:0006540 "glutamate decarboxylation to succinate" evidence=RCA

GO:0004351 "glutamate decarboxylase activity" evidence=RCA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P69910 gadB "glutamate decarboxylase B subunit" [Escherichia coli K-12 (taxid:83333)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 166/348 (47%), Positives = 225/348 (64%)

Query:     8 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
             TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct:     7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66

Query:    67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
             W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct:    67 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126

Query:   127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
             SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G
Sbjct:   127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185

Query:   187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
                M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct:   186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245

Query:   247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
             SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct:   246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305

Query:   307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL 354
             LG    TF +NFS+ + Q+IAQYY+F+RLG E  T    +S +V  +L
Sbjct:   306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYL 353

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA;IDA

GO:0051454 "intracellular pH elevation" evidence=IMP

UNIPROTKB|P69908 gadA "glutamate decarboxylase A subunit" [Escherichia coli K-12 (taxid:83333)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 166/348 (47%), Positives = 225/348 (64%)

Query:     8 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
             TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct:     7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66

Query:    67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
             W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct:    67 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126

Query:   127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
             SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G
Sbjct:   127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185

Query:   187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
                M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct:   186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245

Query:   247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
             SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct:   246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305

Query:   307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL 354
             LG    TF +NFS+ + Q+IAQYY+F+RLG E  T    +S +V  +L
Sbjct:   306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYL 353

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA;IDA

GO:0051454 "intracellular pH elevation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P54767	DCE_SOLLC	4, ., 1, ., 1, ., 1, 5	0.8702	0.9494	0.6733	N/A	no
Q54VQ5	GADA_DICDI	4, ., 1, ., 1, ., 1, 5	0.5029	0.9353	0.7207	yes	no
Q9ZPS3	DCE4_ARATH	4, ., 1, ., 1, ., 1, 5	0.8609	0.9494	0.6855	yes	no
Q07346	DCE_PETHY	4, ., 1, ., 1, ., 1, 5	0.8668	0.9494	0.676	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.1.1.15	0.946
3rd Layer	4.1.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00120058	hypothetical protein (501 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.4202.1	annotation not avaliable (214 aa)						•			0.899
	gw1.V.2645.1	hypothetical protein (479 aa)						•			0.899
	gw1.IV.4359.1	hypothetical protein (231 aa)						•			0.899
	gw1.III.2325.1	SubName- Full=Putative uncharacterized protein; (514 aa)						•			0.899
	gw1.I.2970.1	hypothetical protein (547 aa)						•			0.899
	gw1.97.87.1	hypothetical protein (637 aa)						•			0.899
	gw1.4555.2.1	annotation not avaliable (88 aa)						•			0.899
	gw1.145.154.1	hypothetical protein (564 aa)						•			0.899
	gw1.134.62.1	hypothetical protein (453 aa)						•			0.899
	grail3.0005008802	aldehyde dehydrogenase (NAD+) (EC-1.2.1.3) (543 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
TIGR01788	431	TIGR01788, Glu-decarb-GAD, glutamate decarboxylase	0.0
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	1e-108
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	1e-101
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	7e-80
TIGR03812	373	TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase	6e-29
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	2e-27
PRK02769	380	PRK02769, PRK02769, histidine decarboxylase; Provi	1e-08
PLN02263	470	PLN02263, PLN02263, serine decarboxylase	0.002
PLN03032	374	PLN03032, PLN03032, serine decarboxylase; Provisio	0.002

>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase

 Score =  604 bits (1558), Expect = 0.0
 Identities = 218/339 (64%), Positives = 271/339 (79%), Gaps = 1/339 (0%)

Query: 16  STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKL 75
           S + SR V   IP+++MP+  MP +AAYQ+I+DEL LDGNPRLNLA+FVTTWMEPE  KL
Sbjct: 1   SAYGSRAVSTGIPKYRMPEEEMPPDAAYQLIHDELSLDGNPRLNLATFVTTWMEPEARKL 60

Query: 76  VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135
           +  +INKN +D DEYP T E++NRCVNM+A L++ P  D + AVG  T+GSSEAIML GL
Sbjct: 61  MDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAE-AVGTSTIGSSEAIMLGGL 119

Query: 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKA 195
           A K +W+++ +  GKP DKPN+V G+NVQVCWEKFARYF+VEL+EV ++ G YV++P + 
Sbjct: 120 AMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQV 179

Query: 196 VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255
           VE VDENTI V  ILG+T TGE+EDVK L+D L + N +TGWD PIHVDAASGGFIAPF+
Sbjct: 180 VEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFV 239

Query: 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315
           YPDLEWDFRLP VKSINVSGHKYGLVY GVGWV+WR ++ LP+EL+FH+NYLG D+PTFT
Sbjct: 240 YPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFT 299

Query: 316 LNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL 354
           LNFS+ ++Q+IAQYY F+RLG E       +SL V  +L
Sbjct: 300 LNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYL 338

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). Length = 431

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score =  319 bits (820), Expect = e-108
 Identities = 97/342 (28%), Positives = 139/342 (40%), Gaps = 47/342 (13%)

Query: 33  PDNSMP-KEAAYQVIND-ELMLDGNPRLNLASFVTTWMEPECDKLVMA------------ 78
           P    P    A  +I +  L + G+ R N+   VTTW  P       A            
Sbjct: 1   PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60

Query: 79  --SINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVAD--DKTAVGVGTVGSSEAIMLAG 134
             +IN N    +  P  TEL+N  ++ +A +   P          GV   GSSE+ +LA 
Sbjct: 61  SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLAL 120

Query: 135 LAFKRKWQQKRKEQGKPY-DKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMN 191
           LA + KW ++ K  GKP   K    T        EK A    VEL+E+  +E      M+
Sbjct: 121 LAARTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALIAGVELREIPTDENGKMRGMD 180

Query: 192 PVKAVELVDENT---ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASG 248
             KA+E   EN      V A LG+T +G F+ ++ L D+  K      +D  +HVDAA  
Sbjct: 181 LEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNK------YDLWLHVDAAYA 234

Query: 249 G--FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
           G  FI P       W F +    S + + HK+ LV      +  R K  L   L F+  Y
Sbjct: 235 GSAFICPEFRH---WLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEY 291

Query: 307 LGS---------DQPTFTLNFSKGSSQIIAQYYQFIR-LGFE 338
           LG          D   + +  S+     I + +  +R  G E
Sbjct: 292 LGHNDKQSDVAVDYGDWQIPLSRR--FRILKLWFVLRSYGVE 331

Length = 373

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score =  306 bits (787), Expect = e-101
 Identities = 129/336 (38%), Positives = 173/336 (51%), Gaps = 14/336 (4%)

Query: 10  SREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWME 69
           S + LS  F +       P    P   +  E A  +I DEL LDG+PR NLA F  T + 
Sbjct: 16  SGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVP 75

Query: 70  PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129
           P   +L+++++NKN  D DE P   EL+ R VNM++ L   P      A G  T G +EA
Sbjct: 76  PVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEE----ASGTFTSGGTEA 131

Query: 130 IMLAGLAFKRKW-QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYY 188
            +LA LA + +W ++   E GKP  KPNIV        +EK ARY  + L+ V      Y
Sbjct: 132 NLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDY 191

Query: 189 VMNPVKAVELVDENTI--CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
            ++     E +DENTI   V    G+T TG  +D++ L D+  +      +   +HVDAA
Sbjct: 192 RIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEE------YGIWLHVDAA 245

Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
            GGF+ PFL PD  WDF L  V SI V GHKYGL   G G V++R ++ L   L+F   Y
Sbjct: 246 FGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYY 305

Query: 307 L-GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEIT 341
           L G   P FT+  S+   Q +A Y    RLG E   
Sbjct: 306 LPGGGIPNFTILGSRPGRQALALYANLRRLGREGYR 341

Length = 460

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score =  247 bits (633), Expect = 7e-80
 Identities = 92/292 (31%), Positives = 128/292 (43%), Gaps = 54/292 (18%)

Query: 59  NLASFVTTWMEPECDKLVMASINKNYVDM--DEYPVTTELQNRCVNMIAHLFNTPVADDK 116
            LA FVTT M+P    L M +  KN +D   DE P  TE++   VN +A LF       +
Sbjct: 1   FLAGFVTT-MDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFG---LPSE 56

Query: 117 TAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE-QGKPYDKPNIVTGANVQVCWEKFARYFE 175
            A GV T G SE+ +LA LA + + +++ K   G+  DK  IV      V  EK A Y +
Sbjct: 57  DADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD 116

Query: 176 VELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLT 229
           V+++ V ++E    M+P      +DE      N I V A  G+T TG  + ++ + DL  
Sbjct: 117 VKVRLVPVDEDG-RMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAE 175

Query: 230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV 289
           K       D  +HVDAA GGF+ PF  P    DF +  V SI+V  HKYGLV  G   V+
Sbjct: 176 KY------DLWLHVDAAYGGFLLPFPEPRH-LDFGIERVDSISVDPHKYGLVPLGCSAVL 228

Query: 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEIT 341
            R                                  +  +    R G +   
Sbjct: 229 VR---------------------------------ALKLWATLRRFGRDGYG 247

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA

 Score =  114 bits (288), Expect = 6e-29
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 22/226 (9%)

Query: 74  KLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA 133
           K     I  N  D   +P T +++   V  + +L + P      A G    G +EA + A
Sbjct: 38  KAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP-----DAYGYIVSGGTEANIQA 92

Query: 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPV 193
             A K   +++++        PNI+   +    +EK A    +EL+   L+E  Y ++  
Sbjct: 93  VRAAKNLAREEKR-------TPNIIVPESAHFSFEKAAEMLGLELRYAPLDE-DYTVDVK 144

Query: 194 KAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP 253
              +L+D+NTI +  I G+T  G+ +D++ L  +   +N        +HVDAA GGF+ P
Sbjct: 145 DVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKI-ALEN-----GIYLHVDAAFGGFVIP 198

Query: 254 FL---YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL 296
           FL   Y    +DF LP V+SI +  HK GL     G +++R+K  L
Sbjct: 199 FLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYL 244

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score =  110 bits (278), Expect = 2e-27
 Identities = 76/228 (33%), Positives = 108/228 (47%), Gaps = 25/228 (10%)

Query: 90  YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG 149
           +P T +L+   V M+  L + P      A G  T G +EA + A  A +           
Sbjct: 54  FPGTAKLEEEAVEMLGELLHLP-----DAYGYITSGGTEANIQAVRAAR---------NL 99

Query: 150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVE-LVDENTICVAA 208
              +KPNIV   +    ++K A    VEL+   L++ Y V   VKAVE L+D+NTI +  
Sbjct: 100 AKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVD--VKAVEDLIDDNTIGIVG 157

Query: 209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLV 268
           I G+T  G+ + +  L  +   +N        +HVDAA GGF+ PFL     +DF LP V
Sbjct: 158 IAGTTELGQVDPIPELSKI-ALEN-----GIFLHVDAAFGGFVIPFLDDPPNFDFSLPGV 211

Query: 269 KSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYL-GSDQPTFT 315
            SI +  HK GL     G +++R +  L D L     YL    Q T T
Sbjct: 212 DSITIDPHKMGLAPIPAGGILFRDESYL-DALAVDTPYLTSKKQATLT 258

Length = 371

>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 24/156 (15%)

Query: 208 AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPL 267
           A +G+T+TG  +++K + ++L K   +   D  IH DAA  G I PF+     + F    
Sbjct: 166 ANIGTTMTGAIDNIKEIQEILKKIGID---DYYIHADAALSGMILPFVNNPPPFSFADG- 221

Query: 268 VKSINVSGHKY-------GLVYAGVGWVVWRTKDDLPDELVFHINYLGS-DQPTFTLNFS 319
           + SI +SGHK+       G+V A   +V         + +   ++Y+GS DQ   T++ S
Sbjct: 222 IDSIAISGHKFIGSPMPCGIVLAKKKYV---------ERISVDVDYIGSRDQ---TISGS 269

Query: 320 KGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV 355
           +     +  +     LG + +       L +  + V
Sbjct: 270 RNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAV 305

Length = 380

>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTP---IHVDAASGGFIAPFLYPDLEWDFRLP 266
           +G+T+ G  +D+    DL+ K  EE G+      IH D A  G + PF+    +  F+ P
Sbjct: 236 IGTTVKGAVDDL----DLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKP 291

Query: 267 LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD 310
            + S++VSGHK+       G  + R +         HIN L S+
Sbjct: 292 -IGSVSVSGHKFVGCPMPCGVQITRME---------HINVLSSN 325

Length = 470

>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 12/116 (10%)

Query: 169 KFARYFEVELKEV-KLEEGY--YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH 225
           K AR + +E  +V  L  G   Y        +  D+  I    I G+T+ G  +D+    
Sbjct: 126 KAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNI-GTTVKGAVDDL---- 180

Query: 226 DLLTKKNEETGWDTP---IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY 278
           D + +  +E G+      IH D A  G + PF+    E  FR P + S++VSGHK+
Sbjct: 181 DRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKP-IGSVSVSGHKF 235

Length = 374

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	100.0
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	100.0
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	100.0
PLN02590	539	probable tyrosine decarboxylase	100.0
PLN02880	490	tyrosine decarboxylase	100.0
PLN02263	470	serine decarboxylase	100.0
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	100.0
PLN03032	374	serine decarboxylase; Provisional	100.0
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	100.0
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	100.0
PRK02769	380	histidine decarboxylase; Provisional	100.0
KOG0629	510	consensus Glutamate decarboxylase and related prot	100.0
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	100.0
PRK13520	371	L-tyrosine decarboxylase; Provisional	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	100.0
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.98
PLN02651	364	cysteine desulfurase	99.97
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.96
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.96
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.96
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.95
PRK05367	954	glycine dehydrogenase; Provisional	99.95
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.95
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.95
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.95
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.95
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.95
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.95
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.95
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.94
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.94
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.94
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.94
PRK14012	404	cysteine desulfurase; Provisional	99.94
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.94
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.94
PRK02948	381	cysteine desulfurase; Provisional	99.93
PLN02409	401	serine--glyoxylate aminotransaminase	99.93
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.93
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.92
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.92
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.92
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.92
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.92
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.9
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.9
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.9
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.89
PRK12566	954	glycine dehydrogenase; Provisional	99.89
PLN02724	805	Molybdenum cofactor sulfurase	99.88
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.88
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.88
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.88
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.88
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.85
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.85
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.85
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.85
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.84
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.84
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.84
PRK03080	378	phosphoserine aminotransferase; Provisional	99.83
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.83
PRK08361	391	aspartate aminotransferase; Provisional	99.82
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.82
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.82
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.82
PLN02656	409	tyrosine transaminase	99.82
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.82
PRK06108	382	aspartate aminotransferase; Provisional	99.82
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.82
PLN00175	413	aminotransferase family protein; Provisional	99.82
PRK08960	387	hypothetical protein; Provisional	99.81
PRK12414	384	putative aminotransferase; Provisional	99.81
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.81
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.81
PRK08912	387	hypothetical protein; Provisional	99.81
PRK08363	398	alanine aminotransferase; Validated	99.81
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.81
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.8
PLN02721	353	threonine aldolase	99.8
PRK09082	386	methionine aminotransferase; Validated	99.8
PRK06207	405	aspartate aminotransferase; Provisional	99.8
PRK05957	389	aspartate aminotransferase; Provisional	99.8
PRK07337	388	aminotransferase; Validated	99.8
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.79
PRK07324	373	transaminase; Validated	99.79
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.79
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.79
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.79
PRK07681	399	aspartate aminotransferase; Provisional	99.79
PLN02271	586	serine hydroxymethyltransferase	99.79
PRK05367	954	glycine dehydrogenase; Provisional	99.78
PRK07179	407	hypothetical protein; Provisional	99.78
PRK05764	393	aspartate aminotransferase; Provisional	99.78
PRK05942	394	aspartate aminotransferase; Provisional	99.78
PRK07777	387	aminotransferase; Validated	99.78
PTZ00433	412	tyrosine aminotransferase; Provisional	99.78
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.78
PRK08861	388	cystathionine gamma-synthase; Provisional	99.78
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.78
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.78
PLN02187	462	rooty/superroot1	99.77
PRK07550	386	hypothetical protein; Provisional	99.77
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.77
PRK06836	394	aspartate aminotransferase; Provisional	99.77
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.77
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.77
PRK06290	410	aspartate aminotransferase; Provisional	99.77
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.77
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.77
PRK07682	378	hypothetical protein; Validated	99.77
PRK07683	387	aminotransferase A; Validated	99.77
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.77
PLN02368	407	alanine transaminase	99.77
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.77
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.77
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.76
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.76
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.76
PTZ00377	481	alanine aminotransferase; Provisional	99.76
PRK08068	389	transaminase; Reviewed	99.76
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.76
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.76
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.76
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.76
PRK06225	380	aspartate aminotransferase; Provisional	99.75
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.75
PRK08776	405	cystathionine gamma-synthase; Provisional	99.75
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.75
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.75
PRK06348	384	aspartate aminotransferase; Provisional	99.75
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.75
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.75
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.75
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.75
PRK09265	404	aminotransferase AlaT; Validated	99.75
PRK08045	386	cystathionine gamma-synthase; Provisional	99.75
PRK07050	394	cystathionine beta-lyase; Provisional	99.74
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.74
PRK07811	388	cystathionine gamma-synthase; Provisional	99.74
PLN02231	534	alanine transaminase	99.74
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.74
PRK08064	390	cystathionine beta-lyase; Provisional	99.73
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.73
PRK08574	385	cystathionine gamma-synthase; Provisional	99.73
PRK04311	464	selenocysteine synthase; Provisional	99.73
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.73
PRK09028	394	cystathionine beta-lyase; Provisional	99.73
PRK06855	433	aminotransferase; Validated	99.72
PLN02509	464	cystathionine beta-lyase	99.72
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.72
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.72
PRK08249	398	cystathionine gamma-synthase; Provisional	99.72
PRK09105	370	putative aminotransferase; Provisional	99.72
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.72
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.72
PRK06107	402	aspartate aminotransferase; Provisional	99.72
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.72
PRK08636	403	aspartate aminotransferase; Provisional	99.72
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.71
PRK07568	397	aspartate aminotransferase; Provisional	99.71
PRK09148	405	aminotransferase; Validated	99.71
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.71
PRK08114	395	cystathionine beta-lyase; Provisional	99.71
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.71
PRK07503	403	methionine gamma-lyase; Provisional	99.7
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.7
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.7
PRK09275	527	aspartate aminotransferase; Provisional	99.7
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.7
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.7
PRK06234	400	methionine gamma-lyase; Provisional	99.7
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.7
PRK07671	377	cystathionine beta-lyase; Provisional	99.69
PLN02242	418	methionine gamma-lyase	99.69
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.69
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.69
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.69
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.69
PRK05968	389	hypothetical protein; Provisional	99.69
PRK05939	397	hypothetical protein; Provisional	99.69
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.69
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.69
PRK06767	386	methionine gamma-lyase; Provisional	99.69
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.69
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.69
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.69
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.68
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.68
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.68
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.68
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.68
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.68
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.68
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.68
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.68
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.68
PRK06460	376	hypothetical protein; Provisional	99.67
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.67
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.67
PRK05839	374	hypothetical protein; Provisional	99.67
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.67
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.67
PRK15029	755	arginine decarboxylase; Provisional	99.67
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.67
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.67
PRK08175	395	aminotransferase; Validated	99.66
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.66
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.66
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.66
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.66
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.65
PRK03321	352	putative aminotransferase; Provisional	99.65
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.65
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.65
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.65
PTZ00376	404	aspartate aminotransferase; Provisional	99.65
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.65
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.64
PRK13392	410	5-aminolevulinate synthase; Provisional	99.64
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.64
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.64
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.64
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.64
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.63
PRK10534	333	L-threonine aldolase; Provisional	99.63
PRK07582	366	cystathionine gamma-lyase; Validated	99.63
PRK05967	395	cystathionine beta-lyase; Provisional	99.63
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.63
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.62
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.62
PRK07908	349	hypothetical protein; Provisional	99.62
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.62
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.62
PLN02672	1082	methionine S-methyltransferase	99.61
PRK08354	311	putative aminotransferase; Provisional	99.6
PLN02397	423	aspartate transaminase	99.6
PRK12566	954	glycine dehydrogenase; Provisional	99.6
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.59
PRK08637	388	hypothetical protein; Provisional	99.59
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.59
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.58
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.58
PRK09064	407	5-aminolevulinate synthase; Validated	99.57
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.57
PRK06434	384	cystathionine gamma-lyase; Validated	99.57
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.57
PRK13237	460	tyrosine phenol-lyase; Provisional	99.57
PLN02452	365	phosphoserine transaminase	99.56
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.56
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.56
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.56
PRK13393	406	5-aminolevulinate synthase; Provisional	99.55
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.55
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.55
PRK13578	720	ornithine decarboxylase; Provisional	99.55
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.55
PLN02822	481	serine palmitoyltransferase	99.55
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.55
PRK07505	402	hypothetical protein; Provisional	99.54
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.53
PLN02483	489	serine palmitoyltransferase	99.52
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.51
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.51
PRK12462	364	phosphoserine aminotransferase; Provisional	99.51
PRK07049	427	methionine gamma-lyase; Validated	99.51
PRK15400	714	lysine decarboxylase CadA; Provisional	99.5
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.49
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.47
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.47
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.44
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.44
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.44
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.4
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.39
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.35
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.35
PLN02955	476	8-amino-7-oxononanoate synthase	99.34
PRK02627	396	acetylornithine aminotransferase; Provisional	99.34
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.33
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.33
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.32
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	99.3
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.3
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.29
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.29
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.28
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.26
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.22
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.21
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.21
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.19
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.19
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.18
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.15
PLN02624	474	ornithine-delta-aminotransferase	99.15
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.14
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.13
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.08
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.08
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.07
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.04
PRK04260	375	acetylornithine aminotransferase; Provisional	99.04
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.03
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.02
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.93
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	98.92
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	98.9
PRK09792	421	4-aminobutyrate transaminase; Provisional	98.88
PLN02760	504	4-aminobutyrate:pyruvate transaminase	98.86
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	98.86
PRK04612	408	argD acetylornithine transaminase protein; Provisi	98.85
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	98.83
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	98.83
PRK06541	460	hypothetical protein; Provisional	98.82
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	98.82
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	98.81
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	98.79
PRK12403	460	putative aminotransferase; Provisional	98.78
PLN00144	382	acetylornithine transaminase	98.78
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	98.78
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	98.77
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	98.77
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	98.76
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	98.75
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	98.73
PRK07482	461	hypothetical protein; Provisional	98.72
PRK08088	425	4-aminobutyrate aminotransferase; Validated	98.71
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	98.7
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	98.7
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	98.7
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	98.69
PRK06105	460	aminotransferase; Provisional	98.68
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	98.68
PRK06062	451	hypothetical protein; Provisional	98.68
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	98.67
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.67
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	98.67
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	98.66
PRK05965	459	hypothetical protein; Provisional	98.65
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.65
PRK07481	449	hypothetical protein; Provisional	98.64
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	98.64
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	98.61
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	98.61
PRK07036	466	hypothetical protein; Provisional	98.6
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.56
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.56
PRK07046	453	aminotransferase; Validated	98.54
PRK07480	456	putative aminotransferase; Validated	98.53
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	98.53
PRK07678	451	aminotransferase; Validated	98.51
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	98.51
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	98.5
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.5
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	98.48
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	98.47
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	98.47
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.47
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	98.47
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	98.44
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	98.44
PRK06917	447	hypothetical protein; Provisional	98.44
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	98.43
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	98.41
PRK07483	443	hypothetical protein; Provisional	98.4
PRK06149	972	hypothetical protein; Provisional	98.37
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	98.37
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	98.35
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	98.34
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.32
KOG0630	838	consensus Predicted pyridoxal-dependent decarboxyl	98.32
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	98.28
PRK06148	1013	hypothetical protein; Provisional	98.27
COG4100	416	Cystathionine beta-lyase family protein involved i	98.25
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.24
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.19
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	98.14
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.04
PRK08297	443	L-lysine aminotransferase; Provisional	98.03
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	97.93
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.92
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	97.85
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	97.8
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	97.65
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	97.61
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	97.19
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	97.17
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	97.15
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.04
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	96.79
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	92.3
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	87.88

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-53  Score=412.48  Aligned_cols=317  Identities=38%  Similarity=0.578  Sum_probs=284.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhh-----cCCCCcccccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHH
Q 018437           29 RFKMPDNSMPKEAAYQVINDELML-----DGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNM  103 (356)
Q Consensus        29 ~~~lp~~~~~~~~i~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~  103 (356)
                      ...+|+.+.+.++++.++.....+     ++||+++....+++.+++.+.+++..+++.|..+++.+|.+.++|+++..|
T Consensus        30 ~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~  109 (460)
T COG0076          30 SRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNM  109 (460)
T ss_pred             hccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHH
Confidence            346788889999999998877542     568888877888888889999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh-cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEE
Q 018437          104 IAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE-QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK  182 (356)
Q Consensus       104 la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~-~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~  182 (356)
                      +++++|++.    ...|++|+||||||++|++++|+.+.+.+.. .+...+.|+||+|..+|+|+.|+++++|++++.+|
T Consensus       110 l~~l~~~~~----~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~  185 (460)
T COG0076         110 LSDLLGAPE----EASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVP  185 (460)
T ss_pred             HHHHhCCCC----CCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEE
Confidence            999999974    3679999999999999999999998765433 23334457999999999999999999999999999


Q ss_pred             ecCCccccCHHHHHHHHhhCceE--EEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc
Q 018437          183 LEEGYYVMNPVKAVELVDENTIC--VAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE  260 (356)
Q Consensus       183 ~~~~~~~~d~~~L~~~i~~~~~~--v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~  260 (356)
                      +++.+++||+++|+++|++++..  |+.+.|+|++|.+|||++|+++|+++      ++|+|||+|+||+++||..+...
T Consensus       186 ~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~------~i~lHVDAA~GG~~~pf~~~~~~  259 (460)
T COG0076         186 TVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEY------GIWLHVDAAFGGFLLPFLEPDGR  259 (460)
T ss_pred             eccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHc------CCcEEEEccccceeecccCccch
Confidence            98745999999999999999887  99999999999999999999999999      99999999999999999988887


Q ss_pred             ccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCC-CCCCccccCCCChhHHHHHHHHHHHhCHHH
Q 018437          261 WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGS-DQPTFTLNFSKGSSQIIAQYYQFIRLGFEE  339 (356)
Q Consensus       261 ~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G  339 (356)
                      +++.++++|||++|+|||+++|+|||++++|+++.+++.+.....|+.+ ...++++.|||++..++++|+.|+.+|.+|
T Consensus       260 ~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eG  339 (460)
T COG0076         260 WDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREG  339 (460)
T ss_pred             hhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhH
Confidence            8899999999999999999999999999999987666666566677765 456788999999999999999999999999


Q ss_pred             HHHHHHHHHhccCccc
Q 018437          340 ITFTFISSLKVCPFLV  355 (356)
Q Consensus       340 ~~~~~~~~~~~a~~l~  355 (356)
                      |++++++++++|+||+
T Consensus       340 y~~l~~~~~~~a~~la  355 (460)
T COG0076         340 YRKLLDRTLELARYLA  355 (460)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999985

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=100.00  E-value=7.9e-52  Score=400.15  Aligned_cols=337  Identities=64%  Similarity=1.142  Sum_probs=286.0

Q ss_pred             ccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHH
Q 018437           18 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQ   97 (356)
Q Consensus        18 ~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le   97 (356)
                      |+++-..-.+++..||++|.+.+++++.+...+.++.+..-.+++|+++++.|.+.+++..++++|.++|..++...++|
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np~s~~~~~~le   82 (431)
T TIGR01788         3 YGSRAVSTGIPKYRMPEEEMPPDAAYQLIHDELSLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDEYPQTAEIE   82 (431)
T ss_pred             ccccccccCCCcccCCCCCCCHHHHHHHHHHHhhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCcccCccHHHHH
Confidence            45666677788889999999999999999988776543322347899999989999999999998888888888888999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~  177 (356)
                      +++++|+++++|+++.. ....+++|+||||||++|+++++..+..+.+..|....+..|++|+.+|+|+.++++.+|++
T Consensus        83 ~~~~~~la~llg~~~~~-~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~  161 (431)
T TIGR01788        83 NRCVNMLADLWHAPAKD-AEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVE  161 (431)
T ss_pred             HHHHHHHHHHhCCCCCC-CCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCce
Confidence            99999999999998310 12557789999999999999987654332222232223458999999999999999999999


Q ss_pred             eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCC
Q 018437          178 LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP  257 (356)
Q Consensus       178 v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~  257 (356)
                      ++.||++++++++|+++|+++|+++|.+|+++++||.+|++||+++|+++|++++..++.++|+|||+||+++.+||..+
T Consensus       162 v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~  241 (431)
T TIGR01788       162 LREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYP  241 (431)
T ss_pred             eEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCC
Confidence            99999987436999999999999999999999999999999999999999999855555479999999999999998888


Q ss_pred             CCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCH
Q 018437          258 DLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF  337 (356)
Q Consensus       258 ~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~  337 (356)
                      +.++++..+++||+++|+|||+++|+|+|++++|+++.+...+...+.|+++...+.++++||++..+++.|..|+.+|.
T Consensus       242 ~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~  321 (431)
T TIGR01788       242 DLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGR  321 (431)
T ss_pred             CchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcH
Confidence            88888888899999999999999999999999998755544555567788876555788999998778999999999999


Q ss_pred             HHHHHHHHHHHhccCccc
Q 018437          338 EEITFTFISSLKVCPFLV  355 (356)
Q Consensus       338 ~G~~~~~~~~~~~a~~l~  355 (356)
                      +|+++++++++++++||.
T Consensus       322 ~G~~~i~~~~~~la~~l~  339 (431)
T TIGR01788       322 EGYRKIMQNSLDVARYLA  339 (431)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999874

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=7.5e-52  Score=394.64  Aligned_cols=314  Identities=26%  Similarity=0.350  Sum_probs=255.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhh----hcCCCCcccccccCCCCh--HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHH
Q 018437           30 FKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWME--PECDKLVMASINKNYVDMDEYPVTTELQNRCVNM  103 (356)
Q Consensus        30 ~~lp~~~~~~~~i~~~~~~~~~----~~~~~~~~l~~~~~~~~~--~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~  103 (356)
                      ..+|+.|.+.+++++++.+.+.    .+.||++  .++.++.+.  ..+.+++..++|+|...+..+|...++|.++.+|
T Consensus        10 ~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~--~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~   87 (373)
T PF00282_consen   10 EELPEEGESLEEVLKDLREILAPGVTHWHHPRF--FGFVPGGPSPASILADLLASALNQNGFTWEASPAATEIEREVIRW   87 (373)
T ss_dssp             CCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTB--ESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHhhccCCCCCChhH--hhhccCCccHHHHHHHHHHhhhcccccccccccccccchHHHHHH
Confidence            4889999999999999988765    2557877  355554432  4778999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCC--CCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCC-CCCCeEEecCCCcchHHHHHHhhCCeeEE
Q 018437          104 IAHLFNTPVADD--KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCWEKFARYFEVELKE  180 (356)
Q Consensus       104 la~l~g~~~~~~--~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~-~~~~~vi~s~~~h~s~~~~~~~~G~~v~~  180 (356)
                      +++++|++.++.  ...+|++|+|||+||++|++++|+++.++.+..|.. ..++.|++|+.+|+|+.+++.++|++++.
T Consensus        88 l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~  167 (373)
T PF00282_consen   88 LADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRK  167 (373)
T ss_dssp             HHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEE
T ss_pred             HHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcceeeeEEEE
Confidence            999999994321  125799999999999999999999887766555544 44568999999999999999999999999


Q ss_pred             EEecCCccccCHHHHHHHHhh---C---ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          181 VKLEEGYYVMNPVKAVELVDE---N---TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       181 v~~~~~~~~~d~~~L~~~i~~---~---~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      ||++++ ++||+++|+++|.+   +   +.+|+++.|+|.+|++||+++|.++|+++      ++|+||||||||..+  
T Consensus       168 I~~~~~-~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~------~~wlHVDaA~gg~~~--  238 (373)
T PF00282_consen  168 IPTDED-GRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKY------NIWLHVDAAYGGSAL--  238 (373)
T ss_dssp             E-BBTT-SSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHC------T-EEEEEETTGGGGG--
T ss_pred             ecCCcc-hhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhcccc------ceeeeeccccccccc--
Confidence            999985 99999999999865   2   55899999999999999999999999999      999999999999544  


Q ss_pred             cCCCCc-ccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCC---------CCccccCCCChhH
Q 018437          255 LYPDLE-WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ---------PTFTLNFSKGSSQ  324 (356)
Q Consensus       255 ~~~~~~-~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~tr~~~~  324 (356)
                      +.+..+ ..+.++++||+++|+|||+++|++||++++|++..+...+..++.|++...         .+++++||| ...
T Consensus       239 ~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~  317 (373)
T PF00282_consen  239 LSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFR  317 (373)
T ss_dssp             GHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHH
T ss_pred             ccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccc-cch
Confidence            344433 344478999999999999999999999999998777666666788988431         346789999 556


Q ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          325 IIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       325 ~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ++++|.+|+.+|.+||++++++++++|+||+
T Consensus       318 alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~  348 (373)
T PF00282_consen  318 ALKLWATLKSLGREGYRERIRRCIELARYLA  348 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999985

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02590 probable tyrosine decarboxylase

Probab=100.00  E-value=1.5e-50  Score=398.16  Aligned_cols=329  Identities=16%  Similarity=0.183  Sum_probs=271.0

Q ss_pred             cccccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhh----hcCCCCcccccccCCCCh--HHHHHHHHHHhcccCCC
Q 018437           13 ILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWME--PECDKLVMASINKNYVD   86 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~----~~~~~~~~l~~~~~~~~~--~~v~~~i~~~~~~~~~~   86 (356)
                      .+.+...+.+++..++. ++|+.|.+.+++++++.+.+.    .+.||+|  ++|.++++.  ..+.|++.+++|.+...
T Consensus        85 pv~~~~~p~~l~~~l~~-~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~f--~a~~~~~~~~~~~lgd~l~sa~n~~~~~  161 (539)
T PLN02590         85 PVLSQVQPGYLRDMLPD-SAPERPESLKELLDDVSKKIMPGITHWQSPSY--FAYYASSTSVAGFLGEMLNAGLSVVGFT  161 (539)
T ss_pred             CCCCCCChHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhccCCcCCCCCe--eEeccCCCcHHHHHHHHHHHhcccccCC
Confidence            34445556666777764 899999999999999988764    3679987  466665543  47899999999999999


Q ss_pred             cccCcchHHHHHHHHHHHHHHhCCCCCCC--CCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 018437           87 MDEYPVTTELQNRCVNMIAHLFNTPVADD--KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (356)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~--~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h  164 (356)
                      |..+|...++|+++.+|+++++|++....  ...+|++|+|||+||++|++++|+.+.++....+  ..+..|++|+.+|
T Consensus       162 ~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~--~~~~vvy~S~~aH  239 (539)
T PLN02590        162 WLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTL--LPQLVVYGSDQTH  239 (539)
T ss_pred             cccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccC--CCCEEEEecCCch
Confidence            99999999999999999999999986311  1256899999999999999999986543221111  1234788899999


Q ss_pred             chHHHHHHhhCCe---eEEEEecC-CccccCHHHHHHHHhh------CceEEEEecCCCcccccCCHHHHHHHHHHhhhc
Q 018437          165 VCWEKFARYFEVE---LKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEE  234 (356)
Q Consensus       165 ~s~~~~~~~~G~~---v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~  234 (356)
                      +|+.|+++++|++   ++.||+|. ++++||+++|+++|.+      .|.+|+.+.|+|.+|++|||++|+++|++|   
T Consensus       240 ~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~---  316 (539)
T PLN02590        240 SSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKY---  316 (539)
T ss_pred             HHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHh---
Confidence            9999999999995   89999985 3589999999999975      378999999999999999999999999999   


Q ss_pred             cCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCC---
Q 018437          235 TGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD---  310 (356)
Q Consensus       235 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~---  310 (356)
                         ++|+||||||||+.+  ++++.+..+. ++++||+++|+|||+++|++||++++|++..+...+...+.|+...   
T Consensus       317 ---g~WlHVDaA~GG~al--~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~  391 (539)
T PLN02590        317 ---GIWLHVDAAYAGNAC--ICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSK  391 (539)
T ss_pred             ---CCeEEEecchhhhhh--cChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccc
Confidence               999999999999876  4555443333 7889999999999999999999999998766555555566677431   


Q ss_pred             ------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          311 ------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       311 ------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                            ..++++++||++. ++++|.+|+.+|.+||++++++++++|+||.
T Consensus       392 ~~~~~d~~d~~i~lsRr~r-aLklW~~lr~~G~~G~~~~i~~~~~lA~~~~  441 (539)
T PLN02590        392 KDTVVNYKDWQISLSRRFR-SLKLWMVLRLYGSENLRNFIRDHVNLAKHFE  441 (539)
T ss_pred             cccCCCccccCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  2345788999976 9999999999999999999999999999985

>PLN02880 tyrosine decarboxylase

Probab=100.00  E-value=9.7e-48  Score=378.00  Aligned_cols=323  Identities=16%  Similarity=0.212  Sum_probs=260.8

Q ss_pred             cchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhh----hcCCCCcccccccCCCC--hHHHHHHHHHHhcccCCCcccCcc
Q 018437           19 ASRYVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWM--EPECDKLVMASINKNYVDMDEYPV   92 (356)
Q Consensus        19 ~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~----~~~~~~~~l~~~~~~~~--~~~v~~~i~~~~~~~~~~~~~~~~   92 (356)
                      .+...+..++. .+|+++.+.+++++.+.+.+.    .+.||+|  .+|.++.+  ...+.+++...+|++...+..+|.
T Consensus        43 ~p~~l~~~~~~-~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f--~~~~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~  119 (490)
T PLN02880         43 QPGYLRELLPD-SAPNQPETLDQVLDDVQAKILPGVTHWQSPNY--FAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPA  119 (490)
T ss_pred             CHHHHHHhccc-cCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe--eEeccCCCcHHHHHHHHHHHhhccCCcccccCcc
Confidence            34445556654 789999999999999987664    3678987  35554443  347889999999988888999999


Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCC--CCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 018437           93 TTELQNRCVNMIAHLFNTPVADD--KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (356)
Q Consensus        93 ~~~le~~~~~~la~l~g~~~~~~--~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~  170 (356)
                      ..++|+++.+|+++++|++....  ...+|++|+|||+||++|++++|+...+.....+  ..+..|++|+.+|+|+.|+
T Consensus       120 ~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~--~~~~vv~~S~~aH~Sv~Ka  197 (490)
T PLN02880        120 ATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNA--LEKLVVYASDQTHSALQKA  197 (490)
T ss_pred             cHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccc--cCCeEEEEcCCchHHHHHH
Confidence            99999999999999999986310  0135899999999999999999987543221111  1234788899999999999


Q ss_pred             HHhhCCe---eEEEEecC-CccccCHHHHHHHHhh------CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCc
Q 018437          171 ARYFEVE---LKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (356)
Q Consensus       171 ~~~~G~~---v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~  240 (356)
                      ++++|++   ++.||+|+ ++++||+++|+++|++      .|.+|+.+.|+|.+|++||+++|+++|+++      |+|
T Consensus       198 a~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~------~iw  271 (490)
T PLN02880        198 CQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSN------GMW  271 (490)
T ss_pred             HHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHc------CCE
Confidence            9999996   89999985 3589999999999975      278999999999999999999999999999      999


Q ss_pred             EEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCC---------
Q 018437          241 IHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD---------  310 (356)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~---------  310 (356)
                      +|||||||++++  +.++.+..+. ++++||+++|+|||+++|++||++++|++..+...+.....|+...         
T Consensus       272 lHVDaA~gg~~~--~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~  349 (490)
T PLN02880        272 FHVDAAYAGSAC--ICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVD  349 (490)
T ss_pred             EEEehhhHHHHH--hCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCC
Confidence            999999999876  3444444444 5689999999999999999999999997655434444555665432         


Q ss_pred             CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          311 QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       311 ~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ...++++++|... ++++|.+|+.+|.+|+++++++++++|+||.
T Consensus       350 ~~~~~i~~~rr~~-alklw~~l~~~G~~g~~~~i~~~~~lA~~~~  393 (490)
T PLN02880        350 YKDWQIPLGRRFR-SLKLWMVLRLYGVENLQSYIRNHIKLAKEFE  393 (490)
T ss_pred             hhccCcCCCCccc-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            1234577888886 8999999999999999999999999999874

>PLN02263 serine decarboxylase

Probab=100.00  E-value=1.5e-46  Score=361.37  Aligned_cols=285  Identities=19%  Similarity=0.188  Sum_probs=233.8

Q ss_pred             HHHHHHHHHHhhhcCCCCcccccccCCC--C-hHHHHHHHHHHhcccCCCcccCc----chHHHHHHHHHHHHHHhCCCC
Q 018437           40 EAAYQVINDELMLDGNPRLNLASFVTTW--M-EPECDKLVMASINKNYVDMDEYP----VTTELQNRCVNMIAHLFNTPV  112 (356)
Q Consensus        40 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~v~~~i~~~~~~~~~~~~~~~----~~~~le~~~~~~la~l~g~~~  112 (356)
                      +++++.+.+.+... ..  ++.+| |..  . ...+.+.+...+| |.++|...+    .+.++|+++.+|+++++|+++
T Consensus        76 ~~~l~~~~~~~~~~-~~--~~~gY-p~n~~~d~s~l~~~l~~~~n-N~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p~  150 (470)
T PLN02263         76 ASVLARYRKTLVER-TK--HHLGY-PYNLDFDYGALGQLQHFSIN-NLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEK  150 (470)
T ss_pred             HHHHHHHHHHHHhc-cc--ceeCC-CCcccCChhhHHHHHHhhcc-CCCCccccCCcchhHHHHHHHHHHHHHHHhCCCC
Confidence            55555555554322 11  13456 332  2 3456776655554 666654443    689999999999999999986


Q ss_pred             CCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCH
Q 018437          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNP  192 (356)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~  192 (356)
                      +   ..+|++|+||||||++|++++|+.++           +..+++|+.+|+|+.|+++++|++++.||++++ ++||+
T Consensus       151 ~---~~~G~vtsGGTEaNL~Al~aARe~~~-----------~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~-g~mD~  215 (470)
T PLN02263        151 N---EYWGYITNCGTEGNLHGILVGREVFP-----------DGILYASRESHYSVFKAARMYRMECVKVDTLVS-GEIDC  215 (470)
T ss_pred             C---CCeEEEeCcHHHHHHHHHHHHHhhcC-----------CcEEEEcCCccHHHHHHHHhcCCcceEeccCCC-CcCcH
Confidence            2   26799999999999999999998531           358999999999999999999999999999874 99999


Q ss_pred             HHHHHHHhhC---ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCC-----cEEEecccccccccccCCCCccccc
Q 018437          193 VKAVELVDEN---TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT-----PIHVDAASGGFIAPFLYPDLEWDFR  264 (356)
Q Consensus       193 ~~L~~~i~~~---~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~-----~l~vD~a~~~~~~~~~~~~~~~~~~  264 (356)
                      ++|+++|.++   |.+|+++.|+|++|++|||++|+++|+++      |+     |+||||||||+++||......+++.
T Consensus       216 ~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~------g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~  289 (470)
T PLN02263        216 ADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEEC------GFSQDRFYIHCDGALFGLMMPFVKRAPKVTFK  289 (470)
T ss_pred             HHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHc------CCccCCeeEEEeccchhhHhhhcccccccCCC
Confidence            9999999764   67889999999999999999999999999      75     9999999999999987765567776


Q ss_pred             CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHH
Q 018437          265 LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTF  344 (356)
Q Consensus       265 ~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~  344 (356)
                      . .+||+++|+|||+++|++||++++|++. + ..+..++.|+...+  .++.|||++..++++|++|+.+|.+|+++++
T Consensus       290 ~-~vDSIsvD~HK~l~~P~~cgvll~R~~~-~-~~~~~~~~Yl~~~d--~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i  364 (470)
T PLN02263        290 K-PIGSVSVSGHKFVGCPMPCGVQITRMEH-I-NVLSSNVEYLASRD--ATIMGSRNGHAPIFLWYTLNRKGYRGFQKEV  364 (470)
T ss_pred             c-CccEEEECCccccCCCcCEEEEEEehhh-H-hhhccChHhhCCCC--CCcCCCCCcHHHHHHHHHHHHhCHHHHHHHH
Confidence            4 4999999999999999999999999642 2 34445678887754  4678999998799999999999999999999


Q ss_pred             HHHHhccCccc
Q 018437          345 ISSLKVCPFLV  355 (356)
Q Consensus       345 ~~~~~~a~~l~  355 (356)
                      ++++++|+||.
T Consensus       365 ~~~~~~A~~l~  375 (470)
T PLN02263        365 QKCLRNAHYLK  375 (470)
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-47  Score=353.40  Aligned_cols=336  Identities=49%  Similarity=0.728  Sum_probs=307.5

Q ss_pred             CCCCCccccccccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhcc-c
Q 018437            5 TTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINK-N   83 (356)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~-~   83 (356)
                      .+|..+-++..+.|.+++-.+.++..++|+.|++.+++++.++++..++++|+.++.++..++.++...+++.+.++. |
T Consensus        29 ~~~~~~~k~~~~~~~~~~~~~~~~~~~lP~~gl~~d~v~~~i~~~~~ld~~~~~~~vS~~v~~~~~~~~~l~~~~~~k~N  108 (491)
T KOG1383|consen   29 EKELNKVKDQLSTFMSRYDRQKMYFFTLPSKGLPKDAVLELINDELMLDGNPRLGLASGVVYWGEPELDKLIMEAYNKFN  108 (491)
T ss_pred             HHHHhhhhhhhhhhhhhhhhccceeecCCCCCCCHHHHHHHHHHHhccCCCcccCeeeEEEecCCcchhhHHHHHHhhcC
Confidence            345556677888899999999999999999999999999999999999999999988998888888888998888888 9


Q ss_pred             CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC
Q 018437           84 YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV  163 (356)
Q Consensus        84 ~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~  163 (356)
                      +.+++.+|+..+++.++.++++.+++.+.+    .+|..|+|||||..++....+++    |+.+ .++..|+++++...
T Consensus       109 ~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~----~~g~~t~G~Ses~l~~~k~~~~~----r~~~-k~I~~p~iv~~~~v  179 (491)
T KOG1383|consen  109 PLHPDEFPVVRKLEAECVNMIANLFNAPSD----SCGCGTVGGSESGLAAKKSYRNR----RKAQ-KGIDKPNIVTPQNV  179 (491)
T ss_pred             ccCccccchhHHHHHHHHHHHHHHhcCCcc----ccCccccccchHHHHHHHHHHHH----HHhc-cCCCCccccchHHH
Confidence            999999999999999999999999999952    67999999999966665555443    4443 45667899999999


Q ss_pred             cchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHH-hhhccCCCCcEE
Q 018437          164 QVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIH  242 (356)
Q Consensus       164 h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~-~~~~~~~~~~l~  242 (356)
                      |.+++++++.++++++.||++++++++|+..+.+.++++|+++++..|++|+|.++|+++|.+++-+ +      ++++|
T Consensus       180 ~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w------~ipiH  253 (491)
T KOG1383|consen  180 HAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIW------DIPIH  253 (491)
T ss_pred             HHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHh------CCcee
Confidence            9999999999999999999997779999999999999999999999999999999999999999999 8      99999


Q ss_pred             Eeccccccccc-ccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCC
Q 018437          243 VDAASGGFIAP-FLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKG  321 (356)
Q Consensus       243 vD~a~~~~~~~-~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~  321 (356)
                      ||+|.|+|+.| +..+..+++|+.+++-|+++|+||++++|.|+|++++|++++++.++...+.|+|+.+.++|++|||+
T Consensus       254 vDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~  333 (491)
T KOG1383|consen  254 VDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRP  333 (491)
T ss_pred             ecccCccccccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCc
Confidence            99999999998 55566689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          322 SSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       322 ~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      +..++++|++|..+|.+||.+..++|.+.+++|.
T Consensus       334 g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~  367 (491)
T KOG1383|consen  334 GSQVAAQWAALMSLGEEGYRENTQNIVETARKLR  367 (491)
T ss_pred             ccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998874

>PLN03032 serine decarboxylase; Provisional

Probab=100.00  E-value=1.8e-45  Score=349.07  Aligned_cols=268  Identities=18%  Similarity=0.197  Sum_probs=227.4

Q ss_pred             cccCCC-ChHHHHHHHHHHhcccCCCcccCc----chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           62 SFVTTW-MEPECDKLVMASINKNYVDMDEYP----VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        62 ~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~----~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      +|..+. ....+.+.+..++.+|.++|....    .+.++|+++++|+++++|+++++   .+|++|+||||||++++++
T Consensus        28 gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~---~~G~fTsGGTEaNl~al~~  104 (374)
T PLN03032         28 GYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDE---YWGYITTCGTEGNLHGILV  104 (374)
T ss_pred             CCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCcc---CCEEEeCchHHHHHHHHHH
Confidence            444433 234556777777777777776543    68999999999999999998632   5699999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh---CceEEEEecCCC
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGST  213 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~  213 (356)
                      +|+..           .++.|++|..+|+|+.++++.+|++++.||++++ ++||+++|+++|++   +|.+|+++++||
T Consensus       105 ar~~~-----------~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~-g~id~~~L~~~i~~~~~~~~lvv~tagtt  172 (374)
T PLN03032        105 GREVF-----------PDGILYASRESHYSVFKAARMYRMEAVKVPTLPS-GEIDYDDLERALAKNRDKPAILNVNIGTT  172 (374)
T ss_pred             HHHhC-----------CCcEEEeCCCceeHHHHHHHHcCCCCeEeeeCCC-CcCcHHHHHHHHHHcCCCCEEEEEEecCc
Confidence            87641           1248999999999999999999999999999875 99999999999987   578999999999


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCC-----CcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEE
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWD-----TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~-----~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      ++|++||+++|+++|+++      +     +|+|||+||+++..||......+++. .++||+++|+|||+++|+|||++
T Consensus       173 ~tG~idpi~eI~~i~~~~------g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~G~l  245 (374)
T PLN03032        173 VKGAVDDLDRILRILKEL------GYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPCGVA  245 (374)
T ss_pred             CCccCCCHHHHHHHHHHh------CCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCeEEE
Confidence            999999999999999999      6     59999999999999876554456665 47999999999999999999999


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ++|++ .+ ..+...+.|+...  +.++.|||++..++++|++|+.+|.+||++++++++++|+||.
T Consensus       246 l~r~~-~~-~~~~~~~~Yl~~~--d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~  308 (374)
T PLN03032        246 LTRKK-HV-KALSQNVEYLNSR--DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLK  308 (374)
T ss_pred             EEEch-hh-HhhccCCcccCCC--CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            99974 33 3444567888764  4678899998889999999999999999999999999999984

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=100.00  E-value=3.7e-45  Score=360.51  Aligned_cols=316  Identities=19%  Similarity=0.268  Sum_probs=250.0

Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHhh----hcCCCCcccccccCCCChH---HHHHHHHHHhcccCCCcccCcchHHHHH
Q 018437           26 AIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWMEP---ECDKLVMASINKNYVDMDEYPVTTELQN   98 (356)
Q Consensus        26 ~~~~~~lp~~~~~~~~i~~~~~~~~~----~~~~~~~~l~~~~~~~~~~---~v~~~i~~~~~~~~~~~~~~~~~~~le~   98 (356)
                      .++...+|+.+.+.+++++.+.+.+.    .+.||+|  .++.++..++   .+.+ +...+|+|...+..+|...++|+
T Consensus        56 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP~f--~g~~~~~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~  132 (522)
T TIGR03799        56 DFSSAEIPEQPTFVSEHTQFLLDKLVAHSVHTASPSF--IGHMTSALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLER  132 (522)
T ss_pred             cccccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCe--EEeccCCCchHHHHHHH-HHHHhcCCcceeecCcchHHHHH
Confidence            34456899999999999998766553    3678987  3555553222   2455 56789999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCC--------CCCCCeEEeCChhHHHHHHHHHHHHHHHHHH------HhcCCC-------CCCCeE
Q 018437           99 RCVNMIAHLFNTPVAD--------DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR------KEQGKP-------YDKPNI  157 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~--------~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~------~~~g~~-------~~~~~v  157 (356)
                      ++.+|++++++..++.        ....+|++|+|||+||++|++++|+...+..      ..+|..       ..+..|
T Consensus       133 ~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v  212 (522)
T TIGR03799       133 QVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAI  212 (522)
T ss_pred             HHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEE
Confidence            9999999998632210        1235699999999999999999998743211      011111       124589


Q ss_pred             EecCCCcchHHHHHHhhCC---eeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCcccccCCHHHHHHHH
Q 018437          158 VTGANVQVCWEKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLL  228 (356)
Q Consensus       158 i~s~~~h~s~~~~~~~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~i~~I~~i~  228 (356)
                      ++|+.+|+|+.++++.+|+   +++.||+|++ ++||+++|+++|++      ++.+|+.++++|.+|++||+++|+++|
T Consensus       213 ~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~-g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~  291 (522)
T TIGR03799       213 LVSERGHYSLGKAADVLGIGRDNLIAIKTDAN-NRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIA  291 (522)
T ss_pred             EECCCchHHHHHHHHHcCCCcccEEEEEeCCC-CcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHH
Confidence            9999999999999999998   6999999875 99999999999963      356677889999999999999999999


Q ss_pred             HHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCC
Q 018437          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYL  307 (356)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~  307 (356)
                      +++      ++|+|||+|||++.+  +.++.+..+. ++++||+++|+|||+++|+|||++++|++..+ +.+...+.|+
T Consensus       292 ~~~------g~~lHVDaA~gg~~~--~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~-~~~~~~~~Yl  362 (522)
T TIGR03799       292 QEL------GCHFHVDAAWGGATL--LSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALM-SAIEHHAEYI  362 (522)
T ss_pred             HHc------CCeEEEEchhhhHHH--hCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHH-HHhccCcchh
Confidence            999      999999999998765  3444444444 56899999999999999999999999987543 3444456675


Q ss_pred             CC----CCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          308 GS----DQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       308 ~~----~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ..    .....+++|||++. ++++|++|+.+|.+|+++++++++++|+||.
T Consensus       363 ~~~~~~d~~~~~legsR~~~-al~lw~aL~~lG~~G~~~ii~~~~~la~~l~  413 (522)
T TIGR03799       363 LRKGSKDLGSHTLEGSRPGM-AMLVYAGLHIIGRKGYELLIDQSIEKAKYFA  413 (522)
T ss_pred             cCCCCCccccceeecCcchH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            21    11345788999987 6899999999999999999999999999875

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=100.00  E-value=6.9e-45  Score=361.29  Aligned_cols=314  Identities=16%  Similarity=0.177  Sum_probs=245.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhh----cCCC-CcccccccCCCChH-HHHHHHHHHhcccCCCcccCcchHHHHHHHHHHH
Q 018437           31 KMPDNSMPKEAAYQVINDELML----DGNP-RLNLASFVTTWMEP-ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMI  104 (356)
Q Consensus        31 ~lp~~~~~~~~i~~~~~~~~~~----~~~~-~~~l~~~~~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~l  104 (356)
                      .+.+...+.+++++.+.+.+..    +.|| +| ++++.+.+..+ .+.+++...+|.|...++.+|.+..+|+++.+|+
T Consensus        54 ~~~~~~~~~~~~l~~l~~~l~~~sv~~~~P~ry-~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~l  132 (608)
T TIGR03811        54 SFTKTVNNMKDVLDELSSRLRTESVPWHSAGRY-WGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEF  132 (608)
T ss_pred             ccccCccCHHHHHHHHHHHHhcCCCCCCCccce-EEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHH
Confidence            3445556788899988886642    4577 77 44444444444 6778889999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHH-----HHHH---------------------------------
Q 018437          105 AHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ-----QKRK---------------------------------  146 (356)
Q Consensus       105 a~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~-----~~~~---------------------------------  146 (356)
                      ++++|++.     .+|++|+|||+||+.|++++|+...     +..+                                 
T Consensus       133 a~l~G~~~-----~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~  207 (608)
T TIGR03811       133 ATLMGYKN-----GWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDE  207 (608)
T ss_pred             HHHhCCCC-----CCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhh
Confidence            99999985     5799999999999999999998530     0000                                 


Q ss_pred             ------hcCCCCCC-CeEEecCCCcchHHHHHHhhCCe---eEEEEecCCccccCHHHHHHHHhh------CceEEEEec
Q 018437          147 ------EQGKPYDK-PNIVTGANVQVCWEKFARYFEVE---LKEVKLEEGYYVMNPVKAVELVDE------NTICVAAIL  210 (356)
Q Consensus       147 ------~~g~~~~~-~~vi~s~~~h~s~~~~~~~~G~~---v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~  210 (356)
                            ..|....+ .++++|+..|+|+.|++.++|++   ++.||+|++ ++||+++|+++|++      .+.+|+.+.
T Consensus       208 ~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~-~rmd~~~L~~~I~~~~~~g~p~~~VVata  286 (608)
T TIGR03811       208 IKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSN-YRMDINELEKIIRKLAAEKTPILGVVGVV  286 (608)
T ss_pred             hhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCC-CcCCHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence                  00001111 26899999999999999999996   899999975 99999999999975      256899999


Q ss_pred             CCCcccccCCHHHHHHHHHHhhhccCCCC--cEEEecccccccccccCC------------------------------C
Q 018437          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDT--PIHVDAASGGFIAPFLYP------------------------------D  258 (356)
Q Consensus       211 ~~~~tG~~~~i~~I~~i~~~~~~~~~~~~--~l~vD~a~~~~~~~~~~~------------------------------~  258 (356)
                      |+|.+|++|||++|+++|++..+ +  ++  |+||||||||++.+.+.+                              +
T Consensus       287 GTT~~GaiDpl~eI~~l~~~~~~-~--gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~  363 (608)
T TIGR03811       287 GSTEEGAVDGIDKIVALRNKLMK-E--GIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISRE  363 (608)
T ss_pred             CCcCCcccCCHHHHHHHHHHHHH-c--CCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHh
Confidence            99999999999999999955321 1  65  799999999976321221                              1


Q ss_pred             Cccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCC-------CCccccCCCChhHHHHHHH
Q 018437          259 LEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ-------PTFTLNFSKGSSQIIAQYY  330 (356)
Q Consensus       259 ~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~tr~~~~~~~~~~  330 (356)
                      .+..++ ++++||+++|+|||+++|++||++++|++.. .+.+...+.|+....       ..++++|||++..++++|.
T Consensus       364 ~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~-~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~  442 (608)
T TIGR03811       364 VYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRM-RDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWA  442 (608)
T ss_pred             HHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHH-HHHHhcCcchhccccccCcccccccceecCCccHHHHHHHH
Confidence            122233 6799999999999999999999999999853 344445677774311       2357899999888999999


Q ss_pred             HHHHh--CHHHHHHHHHHHHhccCccc
Q 018437          331 QFIRL--GFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       331 ~l~~l--g~~G~~~~~~~~~~~a~~l~  355 (356)
                      +++.+  |.+||++++++++++|++++
T Consensus       443 ~lr~l~~G~~Gyg~~i~~~i~~A~~~~  469 (608)
T TIGR03811       443 AHKVLPLNVTGYGKLIGASIEGAHRFY  469 (608)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            99998  99999999999999999874

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK02769 histidine decarboxylase; Provisional

Probab=100.00  E-value=1.9e-44  Score=344.33  Aligned_cols=276  Identities=20%  Similarity=0.290  Sum_probs=228.3

Q ss_pred             hcCCCCcccccccCCC-C-hHHHHHHHHHHhcccCCCcccCc----chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCC
Q 018437           52 LDGNPRLNLASFVTTW-M-EPECDKLVMASINKNYVDMDEYP----VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVG  125 (356)
Q Consensus        52 ~~~~~~~~l~~~~~~~-~-~~~v~~~i~~~~~~~~~~~~~~~----~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~G  125 (356)
                      +..+|++++ +|.... . .+.+.+.+ .+..+|.++|...+    .+.++|+++++|+++++|+++++   .+|++|+|
T Consensus        18 ~~~~~~~~~-g~p~~~~~~~~~~~~~~-~~~~~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~---~~G~~TsG   92 (380)
T PRK02769         18 LRHNQYFNV-GYPEAADFDYSALKRFF-SFSINNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNE---SWGYITNG   92 (380)
T ss_pred             HHHhhhccc-CCCchhhcCHHHHHHHH-HhhhccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCC---CCEEEecC
Confidence            355677643 333222 2 34444444 44444666766554    57899999999999999998633   57999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhC---
Q 018437          126 SSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN---  202 (356)
Q Consensus       126 gt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~---  202 (356)
                      |||||+++++++|+..           .+++|++|+.+|+|+.++++.+|++.+.||+++ ++++|+++|+++++++   
T Consensus        93 gTean~~a~~~ar~~~-----------~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~-~g~id~~~L~~~i~~~~~~  160 (380)
T PRK02769         93 GTEGNLYGCYLARELF-----------PDGTLYYSKDTHYSVSKIARLLRIKSRVITSLP-NGEIDYDDLISKIKENKNQ  160 (380)
T ss_pred             hHHHHHHHHHHHHHhC-----------CCcEEEeCCCceehHHHHHHHcCCCCceeccCC-CCcCcHHHHHHHHHhCCCC
Confidence            9999999999887631           136899999999999999999999999999986 4999999999999886   


Q ss_pred             ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCC---CcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC
Q 018437          203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD---TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (356)
Q Consensus       203 ~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~---~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l  279 (356)
                      |++|+++++||++|++||+++|+++|+++      +   +|+|||+||+++.+||.....++++.. ++||+++|+|||+
T Consensus       161 t~lvv~t~gtt~tG~idpi~~I~~i~~~~------g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~  233 (380)
T PRK02769        161 PPIIFANIGTTMTGAIDNIKEIQEILKKI------GIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFI  233 (380)
T ss_pred             cEEEEEEeCCCCCcccCCHHHHHHHHHHh------CCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccC
Confidence            99999999999999999999999999999      8   699999999999999876655677765 8999999999999


Q ss_pred             CCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          280 LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       280 ~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ++|+|||++++|++. + ..+.....|+...  +.++.|||++..++++|++|+.+|.+|+++++++++++++||.
T Consensus       234 ~~P~g~G~l~~r~~~-~-~~~~~~~~yl~~~--d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~  305 (380)
T PRK02769        234 GSPMPCGIVLAKKKY-V-ERISVDVDYIGSR--DQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAV  305 (380)
T ss_pred             CCCCCcEEEEEehhh-h-hhcccCccccCCC--CCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999753 2 2333456676653  4567899999889999999999999999999999999999874

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=3.9e-42  Score=314.95  Aligned_cols=328  Identities=16%  Similarity=0.160  Sum_probs=274.2

Q ss_pred             ccccccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhh---hcCCCCcccccccCCC-ChHHHHHHHHHHhcccCCCc
Q 018437           12 EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELM---LDGNPRLNLASFVTTW-MEPECDKLVMASINKNYVDM   87 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~   87 (356)
                      .-+.++-.+..++. +-.+++|+++.+.+++++..++.+.   ++|||+|. ..+.... +...+.+.+++..|.|...|
T Consensus        56 ~kv~~fhhP~~L~~-l~nlel~~~~esl~qil~~cr~tl~y~vKTgHprff-NQl~~glD~~~Lag~wlT~t~Ntn~~TY  133 (510)
T KOG0629|consen   56 QKVLDFHHPDELKE-LFNLELRDQPESLAQILEDCRDTLKYSVKTGHPRFF-NQLSSGLDPIGLAGEWLTSTANTNMFTY  133 (510)
T ss_pred             ceeecccChHHHHH-HhCcccCCChhhHHHHHHHHHHHHHhhhccCCCcch-hhhccCCCHHHHHHHHHHhccCCCCceE
Confidence            44556666666655 4457999999999999999998886   48999982 1111212 23467888999999999999


Q ss_pred             ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCC-eEEecCCCcch
Q 018437           88 DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP-NIVTGANVQVC  166 (356)
Q Consensus        88 ~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~-~vi~s~~~h~s  166 (356)
                      +..|.+..+|+++...+.++.|++..    .++++++||+-+|++++.+++.+..++.+..|...-++ .+++|+.+|||
T Consensus       134 EiAPvF~lmE~~vl~km~~ivGw~~~----~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYS  209 (510)
T KOG0629|consen  134 EIAPVFVLMEEEVLAKMREIVGWEEG----GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYS  209 (510)
T ss_pred             EecceEEeehHHHHHHHHHHhCCCCC----CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhh
Confidence            99999999999999999999999972    45899999999999999999987555544455433233 67789999999


Q ss_pred             HHHHHHhhCCe---eEEEEecCCccccCHHHHHHHHhh---C---ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCC
Q 018437          167 WEKFARYFEVE---LKEVKLEEGYYVMNPVKAVELVDE---N---TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW  237 (356)
Q Consensus       167 ~~~~~~~~G~~---v~~v~~~~~~~~~d~~~L~~~i~~---~---~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~  237 (356)
                      +.+++.++|++   ++.|++++. |+|++++||+.|-+   +   |.+|.+|+|+|..|++|||+.|+++|++|      
T Consensus       210 i~kaAa~lg~gtd~c~~v~t~e~-Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~------  282 (510)
T KOG0629|consen  210 IKKAAAFLGLGTDHCIKVKTDER-GKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKH------  282 (510)
T ss_pred             HHHHHHHhccCCceeEEeccccc-CccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhc------
Confidence            99999999966   899999985 99999999999853   3   78999999999999999999999999999      


Q ss_pred             CCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCC-----
Q 018437          238 DTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ-----  311 (356)
Q Consensus       238 ~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~-----  311 (356)
                      ++|+|||||+||+.+  ++..+++.+. ++++||+++++||++++|..||.+++|...++..+.+.++.|+...+     
T Consensus       283 ~lWmHvDAAwGGglL--mS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Ydv  360 (510)
T KOG0629|consen  283 KLWMHVDAAWGGGLL--MSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDV  360 (510)
T ss_pred             CEEEEeecccccccc--cChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeec
Confidence            999999999999887  7777777776 88999999999999999999999999988877777667777776543     


Q ss_pred             ----CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          312 ----PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       312 ----~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                          .+..++|-|... ++++|..|+.-|.+|+++.+++++++|+||.
T Consensus       361 S~DTgdK~iQCGRh~D-~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~  407 (510)
T KOG0629|consen  361 SYDTGDKAIQCGRHVD-VFKLWLMWKAKGTQGFEAQVDKCLRLAEYLY  407 (510)
T ss_pred             ccccccchhhcCcccc-HHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence                234577887675 9999999999999999999999999999985

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-36  Score=280.58  Aligned_cols=328  Identities=17%  Similarity=0.226  Sum_probs=271.7

Q ss_pred             ccccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhh----hcCCCCcccccccCCCC--hHHHHHHHHHHhcccCCCc
Q 018437           14 LSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWM--EPECDKLVMASINKNYVDM   87 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~----~~~~~~~~l~~~~~~~~--~~~v~~~i~~~~~~~~~~~   87 (356)
                      +-|=..++|.+..+|. +.|+.+.+.++|++++++++.    +|.||+|  ++|.|+..  +..+.+++...+..-+..|
T Consensus        29 v~P~v~PGYl~~llP~-~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~f--hAyfpa~~s~~siladmLs~~i~~vGFtW  105 (511)
T KOG0628|consen   29 VLPDVKPGYLRDLLPS-KAPEKPESWEDILGDLEKIIMPGITHWQHPHF--HAYFPAGNSYPSILADMLSGGIGCVGFTW  105 (511)
T ss_pred             CCCCCCcchhhhhCCC-CCCCChhhHHHHHHHHHHHccCCCcccCCCce--eeEccCccchHHHHHHHHhccccccccee
Confidence            3344566788888886 779999999999999999886    5889987  45555533  3466777777777667789


Q ss_pred             ccCcchHHHHHHHHHHHHHHhCCCCCC----CCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCC------CCCeE
Q 018437           88 DEYPVTTELQNRCVNMIAHLFNTPVAD----DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPNI  157 (356)
Q Consensus        88 ~~~~~~~~le~~~~~~la~l~g~~~~~----~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~------~~~~v  157 (356)
                      ..+|..++||..+.+|+++++++|..+    .....|++-..+||+++.+++++|....++.+...+..      .+-.+
T Consensus       106 ~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~  185 (511)
T KOG0628|consen  106 ASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVA  185 (511)
T ss_pred             ecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheE
Confidence            999999999999999999999998643    12456788888899999999999887555433322111      12368


Q ss_pred             EecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhC------ceEEEEecCCCcccccCCHHHHHHHHHHh
Q 018437          158 VTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKK  231 (356)
Q Consensus       158 i~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~i~~I~~i~~~~  231 (356)
                      ++|+.+|.|+++++...|++.+.++.|+ ++.|+.+.|+++|.++      |.+|++|.|+|.+-++|++++|..+|+++
T Consensus       186 Y~SDqahssveka~~i~~VklR~l~td~-n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~  264 (511)
T KOG0628|consen  186 YCSDQAHSSVEKACLIAGVKLRALPTDE-NFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCREE  264 (511)
T ss_pred             EecCcccchHHHhHhhcceeEEEeeccc-CcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhhc
Confidence            8999999999999999999999999998 5999999999999874      78999999999999999999999999999


Q ss_pred             hhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCC
Q 018437          232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD  310 (356)
Q Consensus       232 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~  310 (356)
                            ++|||||+||+|...  .+++.+..++ ++.+||+.+++|||+++-..|+.+++|++..+...+..++.|+.+.
T Consensus       265 ------glWLHVDAAYAGsa~--iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~  336 (511)
T KOG0628|consen  265 ------GLWLHVDAAYAGSAF--ICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHA  336 (511)
T ss_pred             ------CEEEEeehhhccccc--cCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcch
Confidence                  999999999998554  7777665555 7899999999999999999999999999877766676777787765


Q ss_pred             C----C---CccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          311 Q----P---TFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       311 ~----~---~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      .    .   -+.++.+|..+ ++++|..++.+|.+++++.++++.++|+.+
T Consensus       337 ~~~~~~Dyrhwqipl~rRfR-SLKlWfv~R~~Gve~lq~~iR~h~~La~~f  386 (511)
T KOG0628|consen  337 YQGSAPDYRHWQIPLGRRFR-SLKLWFVLRSYGVENLQNYIREHVRLAKEF  386 (511)
T ss_pred             hhccCCCccccccccccchh-hHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            2    1   12356788787 999999999999999999999999998765

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=100.00  E-value=1.9e-33  Score=269.42  Aligned_cols=295  Identities=28%  Similarity=0.383  Sum_probs=233.2

Q ss_pred             CCHHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCC
Q 018437           37 MPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDK  116 (356)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~  116 (356)
                      .++.++++.++.....+-.+. .+.+...+++.|.+.+++.+++..+.+.+..+++...+++++++++++++|++.    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~----   76 (371)
T PRK13520          2 LSEEEILEELEEYRSEDLKYE-RILSSMCTEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPD----   76 (371)
T ss_pred             CCHHHHHHHHHHHHhcCCCHH-HeeeeeecCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC----
Confidence            578899999988766543222 123555567778888988888876666655567788888999999999999875    


Q ss_pred             CCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHH
Q 018437          117 TAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAV  196 (356)
Q Consensus       117 ~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~  196 (356)
                       ..+++++||++++..++.+++...         ...+++|+++..+|+++.+.++..|++++.||++++ +.+|+++|+
T Consensus        77 -~~~~~~~ggt~a~~~a~~~~~~~~---------~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~  145 (371)
T PRK13520         77 -AYGYITSGGTEANIQAVRAARNLA---------KAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDD-YRVDVKAVE  145 (371)
T ss_pred             -CCeEEecCcHHHHHHHHHHHHhhc---------cCCCceEEecCcchHHHHHHHHHcCceEEEecCCCC-CcCCHHHHH
Confidence             247899999999999988876531         011468999999999999999999999999999864 899999999


Q ss_pred             HHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCC
Q 018437          197 ELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH  276 (356)
Q Consensus       197 ~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h  276 (356)
                      +++++++++|++++++|++|.+.|+++|.++|+++      |+++|||++|+++..|+......+++...++|++++++|
T Consensus       146 ~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~------g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~  219 (371)
T PRK13520        146 DLIDDNTIGIVGIAGTTELGQVDPIPELSKIALEN------GIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPH  219 (371)
T ss_pred             HHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHc------CCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCc
Confidence            99998888888899999999999999999999999      999999999998877653322224444568999999999


Q ss_pred             cCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          277 KYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       277 K~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ||+++|.++|.+++++++.. ..+....+|..+.. .+...|||+...+++++++++.++.+|++++.++..+++++|.
T Consensus       220 K~~~a~~~~G~~~~~~~~~~-~~l~~~~~~~~~~~-~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~  296 (371)
T PRK13520        220 KMGLAPIPAGGILFRDESYL-DALAVDTPYLTSKK-QATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLA  296 (371)
T ss_pred             cccCccCCceEEEEcCHHHH-HhhcccCccccCCC-CcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHH
Confidence            99999999999998765433 22222223443321 2335688988889999999999999999999999999988774

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=4.2e-33  Score=259.08  Aligned_cols=239  Identities=17%  Similarity=0.134  Sum_probs=196.3

Q ss_pred             cCCCChHHHHHHHHHHhcccCCCccc----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYVDMDE----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~~~~~----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      .++++.|.+.+++..++...+++|..    +..+.++-+++++.+++++|+++.     .++||+||||+|++++..+..
T Consensus         9 ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~-----eIiFTSG~TEsnNlaI~g~~~   83 (386)
T COG1104           9 ATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPE-----EIIFTSGATESNNLAIKGAAL   83 (386)
T ss_pred             ccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCC-----eEEEecCCcHHHHHHHHhhHH
Confidence            46788899999999888766666644    236678888999999999999983     499999999999999998544


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhh---CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~---G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      .+.++       .++.+||+|..+|.++.+.++++   |++|.++|++.+ |.+|+++|+++|+++|.+|.+.+.||.+|
T Consensus        84 a~~~~-------~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~-G~v~~e~L~~al~~~T~LVSim~aNnE~G  155 (386)
T COG1104          84 AYRNA-------QKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSN-GLVDLEQLEEALRPDTILVSIMHANNETG  155 (386)
T ss_pred             hhhcc-------cCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCC-CeEcHHHHHHhcCCCceEEEEEecccCee
Confidence            33211       12469999999999999999988   999999999984 99999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       217 ~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      +++||++|+++|+++      ++++|+|++|+.+-+       +.++...++|.+++|+||+. +|.|+|++++|+...+
T Consensus       156 ~IQpI~ei~~i~k~~------~i~fHvDAvQa~Gki-------pi~~~~~~vD~ls~SaHK~~-GpkGiGaLyv~~~~~~  221 (386)
T COG1104         156 TIQPIAEIGEICKER------GILFHVDAVQAVGKI-------PIDLEELGVDLLSFSAHKFG-GPKGIGALYVRPGVRL  221 (386)
T ss_pred             ecccHHHHHHHHHHc------CCeEEEehhhhcCce-------eccccccCcceEEeehhhcc-CCCceEEEEECCCCcc
Confidence            999999999999999      999999999987655       46666667999999999985 9999999999654332


Q ss_pred             ccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHh
Q 018437          297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL  335 (356)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~l  335 (356)
                            .+...++++...--.||-+...++++-.+++.-
T Consensus       222 ------~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a  254 (386)
T COG1104         222 ------EPLIHGGGQERGLRSGTENVPGIVGFGKAAEIA  254 (386)
T ss_pred             ------CceeccCcCCCCCCCCCccHHHHHHHHHHHHHH
Confidence                  234455555433345888888777777666654

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=100.00  E-value=3.6e-33  Score=264.90  Aligned_cols=251  Identities=35%  Similarity=0.443  Sum_probs=206.8

Q ss_pred             ccccCCCCh-HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           61 ASFVTTWME-PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        61 ~~~~~~~~~-~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      +++.+++.+ ..+.+.+...+|.+...|..+++..++|+++++|+++++|++..   ...+++|+|||+||++++++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~---~~~~~~t~ggt~a~~~al~~~~~   79 (345)
T cd06450           3 AGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSE---DADGVFTSGGSESNLLALLAARD   79 (345)
T ss_pred             ccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCC---CCCEEEeCChhHHHHHHHHHHHH
Confidence            344444433 47888999999887777888999999999999999999999721   23589999999999999999987


Q ss_pred             HHHHHHHhcCC-CCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCC
Q 018437          140 KWQQKRKEQGK-PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGS  212 (356)
Q Consensus       140 ~~~~~~~~~g~-~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~  212 (356)
                      ++.++++..+. ...+++|+++.++|+++.++++.+|++++.||++++ +.+|+++|++++++      ++++|++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~  158 (345)
T cd06450          80 RARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDED-GRMDPEALEAAIDEDKAEGLNPIMVVATAGT  158 (345)
T ss_pred             HhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCC-CCcCHHHHHHHHHHHHHCCCCcEEEEEeccc
Confidence            54332221111 122358999999999999999999999999999875 79999999999987      78899999999


Q ss_pred             CcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       213 ~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      |++|.++|+++|+++|+++      ++|+|+|+||+.+..++..... ......++|++++++|||+++|.|+|+++++ 
T Consensus       159 ~~tG~~~~~~~i~~~~~~~------~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-  230 (345)
T cd06450         159 TDTGAIDPLEEIADLAEKY------DLWLHVDAAYGGFLLPFPEPRH-LDFGIERVDSISVDPHKYGLVPLGCSAVLVR-  230 (345)
T ss_pred             CCCCCCCCHHHHHHHHHHh------CCeEEEechhhHHHhhChhhHH-HhcCccccCEEEEchhHhhCCCcchHHHHHH-
Confidence            9999999999999999999      9999999999988764321111 1223458999999999999999999998764 


Q ss_pred             CCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                                                      ++++|++++.++.+|++++.++..++++||.
T Consensus       231 --------------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~  261 (345)
T cd06450         231 --------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLA  261 (345)
T ss_pred             --------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence                                            7788999999999999999999999998874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=100.00  E-value=2.8e-31  Score=254.65  Aligned_cols=295  Identities=28%  Similarity=0.384  Sum_probs=224.6

Q ss_pred             CHHHHHHHHHHHhhh---cCCCCcccccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCC
Q 018437           38 PKEAAYQVINDELML---DGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVAD  114 (356)
Q Consensus        38 ~~~~i~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~  114 (356)
                      +.+++++.+.+++..   .++++. +.++.+ .+.+.+.+++..++..+.+.+..+++...+++++++++++++|+++  
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~--   76 (373)
T TIGR03812         1 SEEEVLEELKEYRSEDLKYSDGRI-LGSMCT-NPHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPD--   76 (373)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCCcE-EEEEeC-CchHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC--
Confidence            356778888776542   234443 444444 3445566777667655555555567778889999999999999975  


Q ss_pred             CCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHH
Q 018437          115 DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVK  194 (356)
Q Consensus       115 ~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~  194 (356)
                         ..+++++||++++..++.+++.....       ...+++|+++.++|+++.++++..|++++.++++++ +.+|+++
T Consensus        77 ---~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~-~~~d~~~  145 (373)
T TIGR03812        77 ---AYGYIVSGGTEANIQAVRAAKNLARE-------EKRTPNIIVPESAHFSFEKAAEMLGLELRYAPLDED-YTVDVKD  145 (373)
T ss_pred             ---CCeEEeccHHHHHHHHHHHHHHHHhc-------cCCCcEEEECCcchHHHHHHHHHcCCeEEEEeeCCC-CCcCHHH
Confidence               34788999999999988776542110       012368999999999999999999999999999864 8999999


Q ss_pred             HHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccC---CCCcccccCCCceEE
Q 018437          195 AVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY---PDLEWDFRLPLVKSI  271 (356)
Q Consensus       195 L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~---~~~~~~~~~~~~Ds~  271 (356)
                      |++++++++..+++++++|++|.++|+++|.++|+++      ++|+|+|+||+++..++..   .....++...++|++
T Consensus       146 l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~------~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~  219 (373)
T TIGR03812       146 VEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALEN------GIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSI  219 (373)
T ss_pred             HHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHc------CCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEE
Confidence            9999988876666667899999999999999999999      9999999999987766432   112345555689999


Q ss_pred             EEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhcc
Q 018437          272 NVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVC  351 (356)
Q Consensus       272 ~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a  351 (356)
                      ++++|||+++|.++|.+++++++.+ +.+....+|..... .....|||+...+++++++++.++.+|++++.++..+++
T Consensus       220 ~~s~~K~~~~~~~~G~~~~~~~~~~-~~l~~~~~~~~~~~-~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~  297 (373)
T TIGR03812       220 TIDPHKMGLSPIPAGGILFRSKSYL-KYLSVDAPYLTVKK-QATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENT  297 (373)
T ss_pred             EECccccCCCcCCceEEEEeCHHHH-hhhcccCcccCCCC-CcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            9999999999999998887765443 22222234443321 233458998888999999999999999999999999999


Q ss_pred             Cccc
Q 018437          352 PFLV  355 (356)
Q Consensus       352 ~~l~  355 (356)
                      ++|.
T Consensus       298 ~~l~  301 (373)
T TIGR03812       298 RYLV  301 (373)
T ss_pred             HHHH
Confidence            8874

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.5e-30  Score=249.82  Aligned_cols=269  Identities=19%  Similarity=0.142  Sum_probs=213.4

Q ss_pred             CCCcccccccCCCChHHHHHHHHHHhc---ccCC--CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHH
Q 018437           55 NPRLNLASFVTTWMEPECDKLVMASIN---KNYV--DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (356)
Q Consensus        55 ~~~~~l~~~~~~~~~~~v~~~i~~~~~---~~~~--~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (356)
                      .+...|.+..++..+..+.+++.+++.   .|.+  .+..+....+..+++|+.+++++|+++.    ..+++|.|.|++
T Consensus        21 ~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~----~eIvft~~tT~a   96 (405)
T COG0520          21 KPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSS----DEIVFTRGTTEA   96 (405)
T ss_pred             CCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCC----CeEEEeCChhHH
Confidence            343334444455556788888887763   3333  2233446677888999999999999951    349999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceE
Q 018437          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTIC  205 (356)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~  205 (356)
                      +++...++...+.          .+++||++..+|++    |...++..|++++++|+++ ++.+|.+++++.++++|++
T Consensus        97 ln~va~~l~~~~~----------~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~-~g~~~~~~~~~~i~~~Tkl  165 (405)
T COG0520          97 LNLVARGLGRSLK----------PGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDD-DGLLDLDALEKLITPKTKL  165 (405)
T ss_pred             HHHHHHHhhhhhc----------CCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCC-CCCcCHHHHHHhcCCCceE
Confidence            9999888754311          15899999999987    6677777899999999995 5999999999999999999


Q ss_pred             EEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCe
Q 018437          206 VAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV  285 (356)
Q Consensus       206 v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~  285 (356)
                      |.+++.+|.||.+.|+++|+++||++      |++++||++|+.+..       +.|++..++|++++|+|||+++|.|+
T Consensus       166 vais~vSn~tG~~~pv~~I~~la~~~------ga~v~VDaaq~~~h~-------~idv~~l~~Df~afsgHKwl~gP~Gi  232 (405)
T COG0520         166 VALSHVSNVTGTVNPVKEIAELAHEH------GALVLVDAAQAAGHL-------PIDVQELGCDFLAFSGHKWLLGPTGI  232 (405)
T ss_pred             EEEECccccccccchHHHHHHHHHHc------CCEEEEECccccCcc-------CCCchhcCCCEEEEcccccccCCCce
Confidence            99999999999999999999999999      999999999997655       57777779999999999999999999


Q ss_pred             eEEEEeCCCCCccccccccCCCCCCC---------------CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhc
Q 018437          286 GWVVWRTKDDLPDELVFHINYLGSDQ---------------PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKV  350 (356)
Q Consensus       286 g~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~  350 (356)
                      |+|++|++ .+. .+  .+...++..               +.....||.+...++++-++++.+...|++++.++..++
T Consensus       233 GvLy~r~~-~l~-~l--~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L  308 (405)
T COG0520         233 GVLYVRKE-LLE-EL--EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHEREL  308 (405)
T ss_pred             EEEEEchH-HHh-hc--CCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Confidence            99999864 332 21  111222211               011235899998899999999999999999999999999


Q ss_pred             cCccc
Q 018437          351 CPFLV  355 (356)
Q Consensus       351 a~~l~  355 (356)
                      ++|+.
T Consensus       309 ~~~~~  313 (405)
T COG0520         309 TEYLL  313 (405)
T ss_pred             HHHHH
Confidence            88764

>PLN02651 cysteine desulfurase

Probab=99.97  E-value=5.8e-29  Score=238.05  Aligned_cols=257  Identities=16%  Similarity=0.104  Sum_probs=198.3

Q ss_pred             CCCChHHHHHHHHHHhcccCCCccc-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      ++++++.+.+++.+++.....++..     .....++.+++++.+++++|.+++     .+++|+|+|++++.++.++..
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-----~v~~t~~~t~a~~~~l~~~~~   82 (364)
T PLN02651          8 TTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK-----EIIFTSGATESNNLAIKGVMH   82 (364)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEEeCCHHHHHHHHHHHHHH
Confidence            4466678888888776543333322     234566777899999999999862     489999999999999887754


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHHHH---hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR---YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      ...         ..+++|+++..+|+++...+.   ..|++++.+|++++ +.+|+++|++++++++++|++++++|+||
T Consensus        83 ~~~---------~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~t~lv~v~~~~n~tG  152 (364)
T PLN02651         83 FYK---------DKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSD-GLVDLDELAAAIRPDTALVSVMAVNNEIG  152 (364)
T ss_pred             hcc---------CCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCC-CcCCHHHHHHhcCCCcEEEEEECCCCCce
Confidence            211         124689999999998655443   45889999999864 89999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       217 ~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      .+.|+++|.++||++      |+++|||++++.+..|       +++...++|++++++||| ++|.|+|+++++++...
T Consensus       153 ~~~~l~~I~~~~~~~------g~~~~vD~a~~~g~~~-------~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~  218 (364)
T PLN02651        153 VIQPVEEIGELCREK------KVLFHTDAAQAVGKIP-------VDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPRV  218 (364)
T ss_pred             ecccHHHHHHHHHHc------CCEEEEEcchhhCCcc-------cCcccCCCCEEEechhhh-CCCCceEEEEEcCCCCC
Confidence            999999999999999      9999999999876653       455556899999999998 69999999999875321


Q ss_pred             ccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                        .  ..+.+.++........||++...++++.++++.+.. +.+++.++..+++++|.
T Consensus       219 --~--l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~  272 (364)
T PLN02651        219 --R--LEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLL  272 (364)
T ss_pred             --C--CCccccCCCccCCccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence              1  122233333222223689999989999999999865 44777888888777663

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.96  E-value=1.1e-28  Score=230.39  Aligned_cols=247  Identities=18%  Similarity=0.108  Sum_probs=197.4

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcccC-c--chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMDEY-P--VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~-~--~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      +....+++.++.|.+++..++....++|... .  .....-++.|+.+|+++|+++++     ++||+|+||||+++++.
T Consensus        47 ld~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~d-----IiFts~ATEs~Nlvl~~  121 (428)
T KOG1549|consen   47 LDNQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSD-----IVFTSGATESNNLVLKG  121 (428)
T ss_pred             EecCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCc-----EEEeCCchHHHHHHHHH
Confidence            4445566778999999998887655555443 2  33333458999999999999843     99999999999999987


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhh---CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~---G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      .......        ..+.+||+...+|.++...++.+   |++|++||++. ++..|++.+++.|+++|++|.+.+.||
T Consensus       122 v~~~~~~--------~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~-~~~~d~~~~~~~i~~~T~lv~I~~Vnn  192 (428)
T KOG1549|consen  122 VARFFGD--------KTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVED-SGLVDISKLREAIRSKTRLVSIMHVNN  192 (428)
T ss_pred             hhccccc--------cccceEEEecccCcchhHHHHHHHhcCeEEEEeccCc-cccccHHHHHHhcCCCceEEEEEeccc
Confidence            7543211        11238999999999988777754   89999999984 599999999999999999999999999


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      .+|++.|+++|+++|++.      ++.+|+|+||+-+..       +.|++..++|.+++++|||+ +|+|+|+|++|++
T Consensus       193 ~~gv~~Pv~EI~~icr~~------~v~v~~DaAQavG~i-------~vDV~eln~D~~s~s~HK~y-gp~~iGaLYvr~~  258 (428)
T KOG1549|consen  193 EIGVLQPVKEIVKICREE------GVQVHVDAAQAVGKI-------PVDVQELNADFLSISAHKIY-GPPGIGALYVRRK  258 (428)
T ss_pred             CccccccHHHHHHHhCcC------CcEEEeehhhhcCCc-------cccHHHcCchheeeeccccc-CCCcceEEEEccC
Confidence            999999999999999999      999999999987555       57888789999999999997 5666999999962


Q ss_pred             CCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCH
Q 018437          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF  337 (356)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~  337 (356)
                      .   ..+...+.+.+|++..-...||+....++.+-.+++...+
T Consensus       259 ~---~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~  299 (428)
T KOG1549|consen  259 R---PRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNK  299 (428)
T ss_pred             C---CcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHh
Confidence            1   1223456777777644445688888878888888777643

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.96  E-value=3.2e-27  Score=233.12  Aligned_cols=296  Identities=11%  Similarity=0.037  Sum_probs=209.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhcCC--CCcccccc-cCCCChHHHHHHHHHH---hcccCCCcc-cCcchHHHHHHHHH
Q 018437           30 FKMPDNSMPKEAAYQVINDELMLDGN--PRLNLASF-VTTWMEPECDKLVMAS---INKNYVDMD-EYPVTTELQNRCVN  102 (356)
Q Consensus        30 ~~lp~~~~~~~~i~~~~~~~~~~~~~--~~~~l~~~-~~~~~~~~v~~~i~~~---~~~~~~~~~-~~~~~~~le~~~~~  102 (356)
                      ..+|+  +++.+++++++++...+..  ..| ++.+ .....+|.+.+.+.+.   .+.++++++ .+++..+++.++++
T Consensus        44 ~~~~~--~se~~~~~~~~~l~~~n~~~~~~~-~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~  120 (481)
T PRK04366         44 PELPE--VSELEVVRHYTRLSQKNYGVDTGF-YPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQE  120 (481)
T ss_pred             CCCCC--CCHHHHHHHHHHHHhcCCCCCcce-ecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHH
Confidence            46777  8999999999988776532  223 3333 2334456777776654   222344443 57789999999999


Q ss_pred             HHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEE
Q 018437          103 MIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK  182 (356)
Q Consensus       103 ~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~  182 (356)
                      ++++++|++.      ..+..++|+.+.+.++.+++.....    +| ...+++|+++.++|+++...++..|++++.+|
T Consensus       121 ~la~l~G~~~------~~l~~~~GA~a~~~~l~~~r~~~~~----~G-d~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~  189 (481)
T PRK04366        121 WLKEITGMDA------VTLQPAAGAHGELTGLLMIRAYHEA----RG-DTKRTEVIVPDSAHGTNPASAAMAGFKVVEIP  189 (481)
T ss_pred             HHHHHhCCCc------eEEEeCcHHHHHHHHHHHHHHHhhc----cC-cCCCCEEEEcCCccHhHHHHHHHcCCEEEEee
Confidence            9999999974      1344456666666555443321110    11 01245899999999999999999999999999


Q ss_pred             ecCCccccCHHHHHHHHhhCceEEEEecCCCccccc-CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc
Q 018437          183 LEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW  261 (356)
Q Consensus       183 ~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~-~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~  261 (356)
                      ++++ +.+|+++|++++++++++|++++|| ++|.+ +|+++|+++|+++      |+++|||+|+.....+..      
T Consensus       190 ~~~~-~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~------gal~iVD~a~~~~~~g~~------  255 (481)
T PRK04366        190 SNED-GLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIVHEA------GGLLYYDGANLNAILGKA------  255 (481)
T ss_pred             cCCC-CCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHHHHc------CCEEEEEecChhhhcccC------
Confidence            9764 8999999999999999999999988 89988 5899999999999      999999999865433211      


Q ss_pred             cccCCCceEEEEcCCcCCCCCcC-----eeEEEEeCCCCCccccccc-c-----CCCCCCC--C--CccccCCCChhHHH
Q 018437          262 DFRLPLVKSINVSGHKYGLVYAG-----VGWVVWRTKDDLPDELVFH-I-----NYLGSDQ--P--TFTLNFSKGSSQII  326 (356)
Q Consensus       262 ~~~~~~~Ds~~~~~hK~l~~P~g-----~g~l~~~~~~~~~~~~~~~-~-----~~~~~~~--~--~~~~~~tr~~~~~~  326 (356)
                      +....++|+++.++|||+++|.|     +|+++++++ .. +.+... .     .|.-..+  .  ...-.+|.++..++
T Consensus       256 ~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~-~~-~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~  333 (481)
T PRK04366        256 RPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEE-LA-PFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLV  333 (481)
T ss_pred             CccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhh-hH-hhCCCCeeeccCCceeecccccccCCCcccccCchHHHH
Confidence            12245899999999999987754     468888753 22 121100 0     0000000  0  00112344566789


Q ss_pred             HHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          327 AQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       327 ~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ++|.++..+|.+|++++.++++++++||+
T Consensus       334 ~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~  362 (481)
T PRK04366        334 RAYAYIRSLGAEGLREVSEDAVLNANYLK  362 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.96  E-value=8.6e-27  Score=222.11  Aligned_cols=260  Identities=16%  Similarity=0.094  Sum_probs=194.3

Q ss_pred             CCCChHHHHHHHHHHhcccCCCccc-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      .+++++.+.+++.+++.....++..     ......+.+++++++++++|++++     .+++|+|+|+++..++.++..
T Consensus         7 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-----~v~~~~g~t~a~~~~l~~l~~   81 (353)
T TIGR03235         7 TTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE-----EVIFTSGATESNNLAILGLAR   81 (353)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEEeCCHHHHHHHHHHHHHH
Confidence            3456678888888776432223222     123346677899999999999863     389999999999998887754


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHHH---HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      ..        ...+++.|+++..+|+++....   +..|++++.||++++ +.+|+++|++++++++++|++++++|+||
T Consensus        82 ~~--------~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~l~~~l~~~~~lv~~~~~~n~tG  152 (353)
T TIGR03235        82 AG--------EQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDES-GRIDVDELADAIRPDTLLVSIMHVNNETG  152 (353)
T ss_pred             hc--------ccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCC-CcCCHHHHHHhCCCCCEEEEEEcccCCce
Confidence            21        0111268999999999865554   346999999999864 89999999999988899999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       217 ~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      .+.|+++|.++|+++      ++++|+|++++.+..+       .++...++|++++++||| ++|.|+|+++++++...
T Consensus       153 ~~~~~~~I~~l~~~~------~~~~ivD~a~~~g~~~-------~~~~~~~~D~~~~s~~K~-~gp~g~g~l~~~~~~~~  218 (353)
T TIGR03235       153 SIQPIREIAEVLEAH------EAFFHVDAAQVVGKIT-------VDLSADRIDLISCSGHKI-YGPKGIGALVIRKRGKP  218 (353)
T ss_pred             eccCHHHHHHHHHHc------CCEEEEEchhhcCCcc-------ccccccCCCEEEeehhhc-CCCCceEEEEEccCccc
Confidence            999999999999999      9999999998876553       344455899999999998 58999999999875321


Q ss_pred             ccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ...  ..+.+.++........||.+...++++.++++.+ .+|.+++.++..+++++|.
T Consensus       219 ~~~--~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~  274 (353)
T TIGR03235       219 KAP--LKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLR  274 (353)
T ss_pred             ccc--cCceeeCCCCcCccccCCCChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence            111  1122222222122235788888888888998876 3688888888888877764

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.95  E-value=2.4e-26  Score=221.10  Aligned_cols=253  Identities=14%  Similarity=0.068  Sum_probs=190.0

Q ss_pred             CCCChHHHHHHHHHHhcccCCCccc----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDE----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      ++++++.+.+++.+++.....++..    ++....+.+++++++++++|+++     ..+++|+|+|+++.+++.++...
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~-----~~i~~t~~~t~a~~~al~~~~~~   82 (379)
T TIGR03402         8 TTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEP-----DEIIFTSGGTESDNTAIKSALAA   82 (379)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEeCcHHHHHHHHHHHHHHh
Confidence            4456678888888776543333322    13446677789999999999975     24899999999999999877532


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHHH---hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR---YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (356)
                      .+          .+++|+++..+|+++.....   ..|++++.+|++++ +.+|+++|++++++++++|++++++|+||.
T Consensus        83 ~~----------~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~  151 (379)
T TIGR03402        83 QP----------EKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEE-GRLDLEELRAAITDDTALVSVMWANNETGT  151 (379)
T ss_pred             cC----------CCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCC-CcCCHHHHHHhcCCCcEEEEEEcccCCeee
Confidence            10          13689999999988765444   35999999999764 899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCc
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~  297 (356)
                      +.|+++|.++|+++      |+++|+|++|+.+..       ++++...++|++++++|| +++|.|+|+++++++..+ 
T Consensus       152 ~~~~~~I~~l~~~~------g~~vivD~~~~~g~~-------~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~v~~~~~~-  216 (379)
T TIGR03402       152 IFPIEEIGEIAKER------GALFHTDAVQAVGKI-------PIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKGTRF-  216 (379)
T ss_pred             cccHHHHHHHHHHc------CCEEEEECccccccc-------ccCcccCCCCEEEEcHHH-cCCCCceEEEEECCCCCC-
Confidence            99999999999999      999999999986544       345555689999999999 679999999999864321 


Q ss_pred             cccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                           .+.+.++........||.+...++++.++++.+ .++++++.++..+++++|
T Consensus       217 -----~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l  267 (379)
T TIGR03402       217 -----RPLLRGGHQERGRRAGTENVPGIVGLGKAAELA-TEHLEEENTRVRALRDRL  267 (379)
T ss_pred             -----CCcccCCccCCCcCCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Confidence                 122222221111224788888788888888776 346666666666555554

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.95  E-value=1.2e-26  Score=242.08  Aligned_cols=288  Identities=12%  Similarity=0.059  Sum_probs=207.5

Q ss_pred             CCHHHHHHHHHHHhhhcCC---CCcccccccCCCChHHHHHHHH---HHhcccCCCc-ccCcchHHHHHHHHHHHHHHhC
Q 018437           37 MPKEAAYQVINDELMLDGN---PRLNLASFVTTWMEPECDKLVM---ASINKNYVDM-DEYPVTTELQNRCVNMIAHLFN  109 (356)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~v~~~i~---~~~~~~~~~~-~~~~~~~~le~~~~~~la~l~g  109 (356)
                      .++.+++++++++..++..   ..+.|++ ++....|.+.+.+.   ++.+-+++.| +.+++..+++.++.+|+++++|
T Consensus       478 ~sE~e~~r~~~~l~~kn~~~~~~~i~lGs-ct~~~~p~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG  556 (954)
T PRK05367        478 HSETEMMRYLRRLEDKDLALDRSMIPLGS-CTMKLNAAAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITG  556 (954)
T ss_pred             CCHHHHHHHHHHHHhcCcCcccceeeCCc-CCCcCCHHHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHC
Confidence            4888999999988776543   2233544 66665565555443   2222244455 4567899999999999999999


Q ss_pred             CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccc
Q 018437          110 TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYV  189 (356)
Q Consensus       110 ~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~  189 (356)
                      ++.      ......||+++++.++++++..+..    +|. ..+.+|++|+..|.+....+..+|++++.|+++++ +.
T Consensus       557 ~d~------~sl~~~~ga~ge~agL~a~r~~~~~----~G~-~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~-G~  624 (954)
T PRK05367        557 YDA------VSLQPNAGAQGEYAGLLAIRAYHES----RGE-GHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDEN-GN  624 (954)
T ss_pred             CCC------EEECccHHHHHHHHHHHHHHHHhhc----cCC-CCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCC-CC
Confidence            974      2344557889998888777654221    121 12357999999999999999999999999999874 89


Q ss_pred             cCHHHHHHHHhh---CceEEEEecCCCccccc-CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccC
Q 018437          190 MNPVKAVELVDE---NTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL  265 (356)
Q Consensus       190 ~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~-~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~  265 (356)
                      +|+++|++++++   ++.+|++++|++. |.+ +|+++|+++|+++      |+|+|||+|+.+...++..+      ..
T Consensus       625 iD~~~L~~~i~~~~~~la~V~it~pst~-G~~e~~I~eI~~i~h~~------G~~v~VDgA~~~al~~l~~p------g~  691 (954)
T PRK05367        625 IDLDDLRAKAEEHADNLAAIMITYPSTH-GVFEETIREICEIVHEH------GGQVYLDGANMNAQVGLARP------GD  691 (954)
T ss_pred             cCHHHHHHHHhccCCCeEEEEEEcCCCC-eeecCCHHHHHHHHHHc------CCEEEEECcChhhccCCCCh------hh
Confidence            999999999976   4778899999988 654 8999999999999      99999999997655533211      13


Q ss_pred             CCceEEEEcCCcCCCCCcC-----eeEEEEeCCCCCccccccccCCCCC--CC-CCccccCCC---ChhHHHHHHHHHHH
Q 018437          266 PLVKSINVSGHKYGLVYAG-----VGWVVWRTKDDLPDELVFHINYLGS--DQ-PTFTLNFSK---GSSQIIAQYYQFIR  334 (356)
Q Consensus       266 ~~~Ds~~~~~hK~l~~P~g-----~g~l~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~tr---~~~~~~~~~~~l~~  334 (356)
                      .++|++++|+|||+++|.|     +|++++++.  +...+.   .+..+  .. ...+...+.   ++..+...|.+++.
T Consensus       692 ~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~--l~p~lp---g~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~  766 (954)
T PRK05367        692 IGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH--LAPFLP---GHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRM  766 (954)
T ss_pred             cCCCEEEecCcccCCCCcCCCCCceEEEeeccc--ccccCC---CCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHH
Confidence            4899999999999877765     559998742  222211   11110  00 000111122   23446668999999


Q ss_pred             hCHHHHHHHHHHHHhccCccc
Q 018437          335 LGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       335 lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      +|.+|++++.++++.+|+|++
T Consensus       767 ~G~~Glr~~a~~~~~~A~Yl~  787 (954)
T PRK05367        767 MGAEGLRQATEVAILNANYIA  787 (954)
T ss_pred             HCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999975

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.95  E-value=2.3e-26  Score=222.95  Aligned_cols=257  Identities=18%  Similarity=0.133  Sum_probs=192.5

Q ss_pred             cCCCChHHHHHHHHHHhcccCCCccc-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK  138 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~  138 (356)
                      .+++.++.+.+++..++.....++..     .....+..+++++.+++++|++++     .+++|+|+|+++..++.++.
T Consensus        11 a~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-----~v~~~~g~t~a~~~~l~~l~   85 (402)
T TIGR02006        11 ATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR-----EIVFTSGATESNNLAIKGIA   85 (402)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEEeCCHHHHHHHHHHHHH
Confidence            34566778889887776544333321     112235667889999999999762     38999999999999987765


Q ss_pred             HHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHH---hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR---YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      ....         ..+++|+++..+|+++...+.   ..|++++.||++++ +.+|+++|++++++++++|++++++|+|
T Consensus        86 ~~~~---------~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~lv~v~~~~n~t  155 (402)
T TIGR02006        86 HFYK---------SKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSN-GLIDLEELKAAIRDDTILVSIMHVNNEI  155 (402)
T ss_pred             Hhhc---------CCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCC-CcCCHHHHHHhcCCCCEEEEEECCCcCc
Confidence            3211         124689999999998776654   45999999999864 8999999999999889999999999999


Q ss_pred             cccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCC
Q 018437          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       216 G~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~  295 (356)
                      |.+.|+++|.++|+++      |+++|+|++++.+..|       +++...++|++++++||+ ++|.|+|+++++++..
T Consensus       156 G~~~~~~~I~~l~~~~------g~~livD~a~a~g~~~-------~~~~~~~~D~~~~s~~K~-~gp~G~G~l~~~~~~~  221 (402)
T TIGR02006       156 GVIQDIAAIGEICRER------KVFFHVDAAQSVGKIP-------INVNELKVDLMSISGHKI-YGPKGIGALYVRRKPR  221 (402)
T ss_pred             eecccHHHHHHHHHHc------CCEEEEEcchhcCCcc-------cCccccCCCEEEEehhhh-cCCCceEEEEEccCCC
Confidence            9999999999999999      9999999999876553       344445899999999996 4799999999986533


Q ss_pred             CccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      .. .   .+.+.++.+......||.+...++++..+++.+- ++++++.++..+++++|
T Consensus       222 ~~-~---~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l  275 (402)
T TIGR02006       222 VR-L---EALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRL  275 (402)
T ss_pred             CC-C---CceecCCCccCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence            21 1   1112222221112347888888888888888764 56777777777777665

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.95  E-value=1.2e-26  Score=224.02  Aligned_cols=295  Identities=14%  Similarity=0.074  Sum_probs=206.3

Q ss_pred             hhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCCc-ccccccCCCChHHHHH-HHH-HHhcc-cC----C-----Cccc-
Q 018437           24 RAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRL-NLASFVTTWMEPECDK-LVM-ASINK-NY----V-----DMDE-   89 (356)
Q Consensus        24 ~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~v~~-~i~-~~~~~-~~----~-----~~~~-   89 (356)
                      +..+..-.+|+.|.+.+.|...+.+...++.+... |.+.+.-   +..+.- ++. ..++- +.    +     +|.. 
T Consensus        22 ~~~~~~~~~p~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~ger---e~rv~~~~~~~~~~~~~hgigr~~~l~~~q~ka~   98 (444)
T TIGR03531        22 ERLLEQRKIPEEGWDDETIELFLHELSVMDTNNFPNNVGVGER---EGRVFSKLVARRHYRFCHGIGRSGDLVAPQPKAA   98 (444)
T ss_pred             HHHHHcCcCCccCCCHHHHHHHHHHHhcCCcCCCccccCcCcc---cceeechhhhhcccceecCCCCcccccccCcccc
Confidence            44566678999999999999999988766543322 1111111   111222 221 11110 11    0     1111 


Q ss_pred             -CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChh-HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH
Q 018437           90 -YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW  167 (356)
Q Consensus        90 -~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~  167 (356)
                       ++....+.+++..++++++|++.    ....++++||| .++.+++.+++..          ...+++||+|..+|.+.
T Consensus        99 gss~~~~l~~~~e~~~~~~~G~~~----~~~a~~v~~~Tg~al~laL~alr~~----------~~~gd~VI~p~~th~S~  164 (444)
T TIGR03531        99 GSSLLYKLTNKLVKDFLKLLGLRS----IKSAFVVPLATGMSLSLCLSALRHK----------RPKAKYVIWPRIDQKSC  164 (444)
T ss_pred             CccHHHHHHHHHHHHHHHHcCCCC----CCEEEEECCHHHHHHHHHHHHcCCc----------CCCCCEEEEECcChHHH
Confidence             22367888899999999999973    12378899999 7888888876531          01246899999999999


Q ss_pred             HHHHHhhCCeeEEEEe--cCCccccCHHHHHHHHhh---CceEEEEecCC-CcccccCCHHHHHHHHHHhhhccCCCCcE
Q 018437          168 EKFARYFEVELKEVKL--EEGYYVMNPVKAVELVDE---NTICVAAILGS-TLTGEFEDVKLLHDLLTKKNEETGWDTPI  241 (356)
Q Consensus       168 ~~~~~~~G~~v~~v~~--~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~-~~tG~~~~i~~I~~i~~~~~~~~~~~~~l  241 (356)
                      .+++.++|+++++||+  +++++.+|+++|+++|++   ++++++++.++ +.+|.++|+++|+++|++|      ++|+
T Consensus       165 ~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~------gI~l  238 (444)
T TIGR03531       165 IKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANY------DIPH  238 (444)
T ss_pred             HHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHc------CCEE
Confidence            9999999999999995  555699999999999986   44555555554 4456899999999999999      9999


Q ss_pred             EEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCC
Q 018437          242 HVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKG  321 (356)
Q Consensus       242 ~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~  321 (356)
                      |+|+|||.+.. +.....+..+...++|++++|+||++.+|.++|++++++++.. +.+  ...|.+.          ..
T Consensus       239 IvDaAyg~~~~-~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~-~~i--~~~y~g~----------~~  304 (444)
T TIGR03531       239 IVNNAYGLQSN-KYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFI-QEI--SKSYPGR----------AS  304 (444)
T ss_pred             EEECcCcCcCh-hhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHH-HHH--HHhccCC----------CC
Confidence            99999996332 1111111122233589999999999999999899888776554 221  1123221          12


Q ss_pred             hhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          322 SSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       322 ~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ......+|+++..+|.+|+++++++..++++++.
T Consensus       305 ~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~  338 (444)
T TIGR03531       305 ASPSLDVLITLLSLGSKGYLELLKERKEMYKYLK  338 (444)
T ss_pred             ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            3347889999999999999999999999998764

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.95  E-value=2.6e-26  Score=220.42  Aligned_cols=258  Identities=16%  Similarity=0.089  Sum_probs=193.8

Q ss_pred             CChHHHHHHHHHHhcccCCC--cccC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVD--MDEY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~--~~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      ++++.+.+++.+++..+...  +..+   ........++++++++++|.+..    ..+++|+|+++++.+++.+..++ 
T Consensus        11 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----~~v~~~~g~t~al~~~~~~~~~~-   85 (376)
T TIGR01977        11 PKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSS----AHVVFTNNATTALNIALKGLLKE-   85 (376)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCC----CeEEEeCCHHHHHHHHHHhccCC-
Confidence            44567788877776543212  1112   23346667888999999998742    24789999999999888764332 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHH----HHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccc
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVCWE----KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s~~----~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (356)
                                  +++|+++.++|.++.    ..++..|++++.++++++ +.+|+++|++++++++++|++++++|+||.
T Consensus        86 ------------gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~  152 (376)
T TIGR01977        86 ------------GDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNE-GLISPERIKRAIKTNTKLIVVSHASNVTGT  152 (376)
T ss_pred             ------------CCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCC-CCcCHHHHHHhcCCCCeEEEEECCCCCccc
Confidence                        578999999998864    345566999999999864 889999999999889999999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCc
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~  297 (356)
                      +.|+++|.++|+++      ++++++|++++.+..+       +++...++|++++++|||+++|.|+|+++++++..+.
T Consensus       153 ~~~~~~i~~l~~~~------~~~livD~a~~~g~~~-------~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~  219 (376)
T TIGR01977       153 ILPIEEIGELAQEN------GIFFILDAAQTAGVIP-------IDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLK  219 (376)
T ss_pred             cCCHHHHHHHHHHc------CCEEEEEhhhccCccC-------CCchhcCCCEEEecccccccCCCCceEEEEcCCcCcC
Confidence            99999999999999      9999999999876653       3444568999999999999999999999998764321


Q ss_pred             cccccccC----CCCC-C-CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          298 DELVFHIN----YLGS-D-QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       298 ~~~~~~~~----~~~~-~-~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ........    +... . .......+|.+....++++.+++.+...|++++.+++.++++++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~  283 (376)
T TIGR01977       220 PLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLL  283 (376)
T ss_pred             ceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            11100000    0000 0 000012368888889999999999999999999999988887763

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.95  E-value=6.4e-26  Score=233.00  Aligned_cols=289  Identities=11%  Similarity=0.041  Sum_probs=213.7

Q ss_pred             CHHHHHHHHHHHhhhcCCC--Cc-ccccccCCCChHHHHHHHH----HHhcccCCCcc-cCcchHHHHHHHHHHHHHHhC
Q 018437           38 PKEAAYQVINDELMLDGNP--RL-NLASFVTTWMEPECDKLVM----ASINKNYVDMD-EYPVTTELQNRCVNMIAHLFN  109 (356)
Q Consensus        38 ~~~~i~~~~~~~~~~~~~~--~~-~l~~~~~~~~~~~v~~~i~----~~~~~~~~~~~-~~~~~~~le~~~~~~la~l~g  109 (356)
                      ++.+++++++++..++..-  .+ .+++  -+...+.+.+.+.    ++++-+++.|+ .++++.+++.++.+|+++++|
T Consensus       467 sE~e~~r~~~~L~~kn~~~~~~fi~lGs--ctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltG  544 (939)
T TIGR00461       467 SETEMLRYLHRLESKDLALNNSMIPLGS--CTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITG  544 (939)
T ss_pred             CHHHHHHHHHHHHhcCCCccccCCCCcc--CCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHC
Confidence            8899999998887665321  22 2222  2222233444442    34443455555 577899999999999999999


Q ss_pred             CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccc
Q 018437          110 TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYV  189 (356)
Q Consensus       110 ~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~  189 (356)
                      ++.      .+....||+.+...+++++|.++..    +|. ..+.+|++|...|.+....++..|++++.||++++ |.
T Consensus       545 md~------~Sl~p~aGA~gE~agL~aiR~y~~~----rge-~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~-G~  612 (939)
T TIGR00461       545 FDA------ISLQPNSGAQGEYAGLRVIRSYHES----RGE-NHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQD-GN  612 (939)
T ss_pred             CCC------cccCCchHHHHHHHHHHHHHHHHHh----cCC-CCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCC-CC
Confidence            984      3677788999999999988875421    121 22468999999999988889999999999999864 99


Q ss_pred             cCHHHHHHHHhh---CceEEEEecCCCcccccCC-HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccC
Q 018437          190 MNPVKAVELVDE---NTICVAAILGSTLTGEFED-VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL  265 (356)
Q Consensus       190 ~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~-i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~  265 (356)
                      +|+++|++++++   ++++|++++||| +|.++| +++|+++|+++      |.++++|+|+.........+      ..
T Consensus       613 iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~------G~~v~VDgAq~~al~~l~~P------g~  679 (939)
T TIGR00461       613 IDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSF------GGQVYLDGANMNAQVGLTSP------GD  679 (939)
T ss_pred             cCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHc------CCEEEEEecChhhCCCCCCc------cc
Confidence            999999999984   899999999999 699977 99999999999      99999999995533311111      24


Q ss_pred             CCceEEEEcCCcCCC-----CCcCeeEEEEeCCCCCcccccccc-----CCCCCCCC-Cccc-cCCCChhHHHHHHHHHH
Q 018437          266 PLVKSINVSGHKYGL-----VYAGVGWVVWRTKDDLPDELVFHI-----NYLGSDQP-TFTL-NFSKGSSQIIAQYYQFI  333 (356)
Q Consensus       266 ~~~Ds~~~~~hK~l~-----~P~g~g~l~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~-~~tr~~~~~~~~~~~l~  333 (356)
                      .++|++.+|.||+++     +|+|+|++++|+.  +...++...     ...+..+. ..+. .+++++..++..|++|+
T Consensus       680 ~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~--L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~  757 (939)
T TIGR00461       680 LGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH--LIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIK  757 (939)
T ss_pred             cCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh--chhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHH
Confidence            589999999999988     4556699999853  322222110     00011110 1112 27888888999999999


Q ss_pred             HhCHHHHHHHHHHHHhccCccc
Q 018437          334 RLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       334 ~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      .+|.+|+++..+.++.+|+||+
T Consensus       758 ~lG~~GL~~~a~~ailnAnYl~  779 (939)
T TIGR00461       758 MMGNEGLPKASVVAILNANYMA  779 (939)
T ss_pred             HHCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999985

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.95  E-value=6e-26  Score=219.79  Aligned_cols=263  Identities=18%  Similarity=0.120  Sum_probs=194.3

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcc-----cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMD-----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~-----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      |.....+++++.+.+++.++++....++.     ......+..+++++.+++++|.+..    ..+++|+|+|+++.+++
T Consensus        20 ld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~----~~i~~t~g~t~~l~~~~   95 (398)
T TIGR03392        20 LDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDA----ENIVWTRGTTESINLVA   95 (398)
T ss_pred             eeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC----CeEEEeCChHHHHHHHH
Confidence            43444456667888888877653222221     1223455667899999999999521    24889999999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEec
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      .++....         -..+++|++++++|++    +...++..|++++.+|++++ +.+|+++|+++++++|++|++++
T Consensus        96 ~~~~~~~---------~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~~~~l~~~i~~~t~lv~i~~  165 (398)
T TIGR03392        96 QSYARPR---------LQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGAD-LLPDIRQLPELLTPRTRILALGQ  165 (398)
T ss_pred             HHhhhcc---------CCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCC-CCcCHHHHHHHhccCceEEEEEC
Confidence            8763210         0124689999999977    45667788999999999864 88999999999999999999999


Q ss_pred             CCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       211 ~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      ++|+||.+.|+++|.++|+++      |+++++|++|+.+..+       .++...++|.+++|+|| +++|.|+|++++
T Consensus       166 ~~n~tG~~~~~~~i~~~~~~~------~~~~ivD~a~~~~~~~-------~~~~~~~~d~~~~s~~K-~~gp~G~G~l~~  231 (398)
T TIGR03392       166 MSNVTGGCPDLARAITLAHQY------GAVVVVDGAQGVVHGP-------PDVQALDIDFYAFSGHK-LYGPTGIGVLYG  231 (398)
T ss_pred             ccccccccCCHHHHHHHHHHc------CCEEEEEhhhhcCCCC-------CChhhcCCCEEEEeccc-ccCCCceEEEEE
Confidence            999999999999999999999      9999999999754432       33333468999999999 458999999987


Q ss_pred             eCCCCCccccccccCCCCCCC---------------CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          291 RTKDDLPDELVFHINYLGSDQ---------------PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      +++ .. +.+   ..+.++..               ...-..||++...++++.++++.+...|++++.++..+++++|.
T Consensus       232 ~~~-~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~  306 (398)
T TIGR03392       232 KTE-LL-EAM---PPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAE  306 (398)
T ss_pred             cHH-HH-hhC---CCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            653 22 111   11111110               01112479998889999999999877788888888777776653

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.95  E-value=3e-26  Score=222.41  Aligned_cols=264  Identities=16%  Similarity=0.088  Sum_probs=196.6

Q ss_pred             ccccccCCCChHHHHHHHHHHhcccCCC-----cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHH
Q 018437           59 NLASFVTTWMEPECDKLVMASINKNYVD-----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (356)
Q Consensus        59 ~l~~~~~~~~~~~v~~~i~~~~~~~~~~-----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (356)
                      .|....++++++.+.+++.+++.....+     +..+.......+++++.+++++|..+.    ..+++|+|+|+++..+
T Consensus        26 Yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~----~~v~~t~g~t~~l~~~  101 (406)
T PRK09295         26 YLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSA----EELVFVRGTTEGINLV  101 (406)
T ss_pred             EEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCC----CeEEEeCCHHHHHHHH
Confidence            3444445566678888888777532211     112334566677899999999998421    2489999999999988


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEe
Q 018437          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      +.++....         -..+++|+++.++|++    +...++..|++++.++++++ +.+|+++|++++++++++|+++
T Consensus       102 ~~~~~~~~---------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~t~lv~l~  171 (406)
T PRK09295        102 ANSWGNSN---------VRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPD-GTLQLETLPALFDERTRLLAIT  171 (406)
T ss_pred             HHHhhhhc---------CCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCC-CCCCHHHHHHhcCCCcEEEEEe
Confidence            87653210         0124689999999875    45666778999999999864 8999999999999899999999


Q ss_pred             cCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEE
Q 018437          210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (356)
Q Consensus       210 ~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~  289 (356)
                      +++|+||.+.|+++|.++|+++      ++++++|++|+.+..       ++++...++|.+++|+|| +++|.|+|+++
T Consensus       172 ~~~n~tG~~~~~~~i~~~~~~~------~~~vivD~a~~~g~~-------~~~~~~~~~D~~~~s~~K-~~gp~G~G~l~  237 (406)
T PRK09295        172 HVSNVLGTENPLAEMIALAHQH------GAKVLVDGAQAVMHH-------PVDVQALDCDFYVFSGHK-LYGPTGIGILY  237 (406)
T ss_pred             cchhcccccCCHHHHHHHHHHc------CCEEEEEcccccCcc-------ccCchhcCCCEEEeehhh-ccCCCCcEEEE
Confidence            9999999999999999999999      999999999976544       244444579999999999 56899999999


Q ss_pred             EeCCCCCccccccccCCCCCC-C---------------CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCc
Q 018437          290 WRTKDDLPDELVFHINYLGSD-Q---------------PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPF  353 (356)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~  353 (356)
                      ++++ .+ +.+.   ++.++. .               ...-..||++...++++..+++.+...|++++.++..+++++
T Consensus       238 ~~~~-~~-~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~  312 (406)
T PRK09295        238 VKEA-LL-QEMP---PWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHY  312 (406)
T ss_pred             EchH-hH-hhCC---CcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            8754 22 1111   111110 0               011135899999999999999999888888888888777776


Q ss_pred             cc
Q 018437          354 LV  355 (356)
Q Consensus       354 l~  355 (356)
                      |.
T Consensus       313 l~  314 (406)
T PRK09295        313 AL  314 (406)
T ss_pred             HH
Confidence            53

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.95  E-value=1.1e-25  Score=218.04  Aligned_cols=261  Identities=18%  Similarity=0.108  Sum_probs=194.3

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCccc-----CcchHHHHHHHHHHHHHHhCC-CCCCCCCCCeEEeCChhHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAIMLA  133 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~-----~~~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~Ggt~a~~~a  133 (356)
                      |.....+++++.+.+++.+++.....++..     +....+..+++++.+++++|+ ++     ..+++|+|+|+++..+
T Consensus        23 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-----~~i~~~~~~t~~i~~~   97 (401)
T PRK10874         23 LDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDA-----KNIVWTRGTTESINLV   97 (401)
T ss_pred             EeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCC-----CEEEEECCHHHHHHHH
Confidence            434444556678888888877643323211     234566777899999999999 44     3488999999999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEe
Q 018437          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      +.++....         -..+++|++++++|++    +...++..|++++.+|++.+ +.+|+++++++++++|++|+++
T Consensus        98 ~~~~~~~~---------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~t~lv~i~  167 (401)
T PRK10874         98 AQSYARPR---------LQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGAD-RLPDVDLLPELITPRTRILALG  167 (401)
T ss_pred             HHHhhhcc---------CCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCC-CcCCHHHHHHhcCcCcEEEEEe
Confidence            88763210         0125799999999976    55667788999999999764 8999999999999999999999


Q ss_pred             cCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEE
Q 018437          210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (356)
Q Consensus       210 ~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~  289 (356)
                      +++|+||.+.|+++|.++|+++      |+++++|++|+.+..|       .++...++|.++.++|| +++|.|+|+++
T Consensus       168 ~~~n~tG~~~~~~~i~~l~~~~------g~~~ivD~a~~~g~~~-------~~~~~~~~d~~~~s~~K-~~gp~G~G~l~  233 (401)
T PRK10874        168 QMSNVTGGCPDLARAITLAHQA------GMVVMVDGAQGAVHFP-------ADVQALDIDFYAFSGHK-LYGPTGIGVLY  233 (401)
T ss_pred             CCcccccCcCCHHHHHHHHHHc------CCEEEEECCccccccc-------CCchhcCCCEEEEeccc-ccCCCccEEEE
Confidence            9999999999999999999999      9999999999754442       33333469999999999 46899999999


Q ss_pred             EeCCCCCccccccccCCCCCC---------------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          290 WRTKDDLPDELVFHINYLGSD---------------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ++++ ... .+   .++.++.               .......||++....+++..+++.+...|+.++.++..+++++|
T Consensus       234 ~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l  308 (401)
T PRK10874        234 GKSE-LLE-AM---SPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLA  308 (401)
T ss_pred             EchH-HHh-cC---CCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            8653 221 11   1111110               00111247888888999999999888888887777777776655

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.94  E-value=2.9e-25  Score=212.98  Aligned_cols=258  Identities=17%  Similarity=0.090  Sum_probs=190.5

Q ss_pred             CCChHHHHHHHHHHhcccCCCc-----ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           66 TWMEPECDKLVMASINKNYVDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        66 ~~~~~~v~~~i~~~~~~~~~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      +++++.+.+++.+.+......+     ..++...+...++++.+++++|.+..    ..+++|+|+|+++.+++.++...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----~~v~~~~g~t~a~~~~~~~l~~~   84 (373)
T cd06453           9 SQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSP----DEIIFTRNTTEAINLVAYGLGRA   84 (373)
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC----CeEEEeCCHHHHHHHHHHHhhhc
Confidence            3455677777766654322222     22345567777899999999999721    34789999999999999887541


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchH----HHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCW----EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~----~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                                ...+++|+++.++|++.    ...++..|++++.|+++. ++.+|+++|++++++++++|++++++|+||
T Consensus        85 ----------~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG  153 (373)
T cd06453          85 ----------NKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD-DGQLDLEALEKLLTERTKLVAVTHVSNVLG  153 (373)
T ss_pred             ----------CCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC-CCCcCHHHHHHHhcCCceEEEEeCcccccC
Confidence                      00257899999999884    445567899999999986 489999999999998999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       217 ~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      .+.|+++|.++|+++      ++++|+|++++.+..+       +++...++|++++++|||+++ .|+|+++++++ ..
T Consensus       154 ~~~~~~~i~~~~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~-~~  218 (373)
T cd06453         154 TINPVKEIGEIAHEA------GVPVLVDGAQSAGHMP-------VDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEE-LL  218 (373)
T ss_pred             CcCCHHHHHHHHHHc------CCEEEEEhhhhcCcee-------eeccccCCCEEEeccccccCC-CCcEEEEEchH-Hh
Confidence            999999999999999      9999999999765543       233334789999999999865 88999988653 22


Q ss_pred             cccccc-ccCCC--------CCC---CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          297 PDELVF-HINYL--------GSD---QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       297 ~~~~~~-~~~~~--------~~~---~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      . .+.. ...+.        ...   .......+|.+....++++.+++.+..+|++++.++..++++|+
T Consensus       219 ~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l  287 (373)
T cd06453         219 E-EMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYA  287 (373)
T ss_pred             h-cCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            1 1110 00000        000   00001136777778899999999999889988888888887775

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.94  E-value=8.1e-25  Score=210.74  Aligned_cols=255  Identities=16%  Similarity=0.106  Sum_probs=182.3

Q ss_pred             CCCChHHHHHHHHHHhcccCCCccc---C--cchHHHHHHHHHHHHHHhCC-CCCCCCCCCeEEeCChhHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDE---Y--PVTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAIMLAGLAFK  138 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~---~--~~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~Ggt~a~~~al~~~~  138 (356)
                      ++++++.+.+++..+++....++..   +  +....++ +.++.+++.+|+ ++     ..+++|+|+|+++.+++.++.
T Consensus         8 ~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~-~a~~~~~~~~~~~~~-----~~i~~t~g~teal~~~~~~~~   81 (382)
T TIGR03403         8 TTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIA-EALDKLYKGINARDL-----DDIIITSCATESNNWVLKGVY   81 (382)
T ss_pred             CCCCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHH-HHHHHHHHHcCcCCC-----CeEEEeCCHHHHHHHHHHHHH
Confidence            4566678999998887653333321   1  1333444 455556666776 33     248999999999999888763


Q ss_pred             HHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH---HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      .....       ..++++|+++..+|+++....   +..|++++.||++++ +.+|+++|++++++++++|++++++|+|
T Consensus        82 ~~~~~-------~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~-g~~d~~~l~~~i~~~t~lv~~~~~~n~t  153 (382)
T TIGR03403        82 FDEIL-------KGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQ-GTITAEQVREAITEKTALVSVMWANNET  153 (382)
T ss_pred             Hhhcc-------cCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCC-CCCCHHHHHHhcccCCeEEEEEcccCCC
Confidence            21000       011357999999998876654   456999999999864 8999999999999899999999999999


Q ss_pred             cccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCC
Q 018437          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       216 G~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~  295 (356)
                      |.+.|+++|.++|+++      |+++|+|++++.+..|       .++...++|++++|+||| ++|.|+|++++|++..
T Consensus       154 G~~~~~~~I~~la~~~------g~~~ivD~a~~~g~~~-------~~~~~~~~D~~~~s~~K~-~gp~G~g~l~vr~~~~  219 (382)
T TIGR03403       154 GMIFPIKEIGEICKER------GVLFHTDAVQAIGKIP-------VDVQKAGVDFLSFSAHKF-HGPKGVGGLYIRKGVE  219 (382)
T ss_pred             ccccCHHHHHHHHHHc------CCEEEEechhhcCCCc-------cCccccCCCEEEEcchhh-CCCCceEEEEECCCCC
Confidence            9999999999999999      9999999998865442       344455899999999998 5899999999986532


Q ss_pred             CccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +      .+.+.++........||.+....+++..+++.+ .+++++..++..+++++|
T Consensus       220 ~------~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l  271 (382)
T TIGR03403       220 L------TPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLA-NEYLDFEKSHVRRLRDRL  271 (382)
T ss_pred             C------CCcccCCCCCCCcccCCcChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Confidence            2      111222211111124788887777888888765 345666666666666554

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.94  E-value=3.1e-25  Score=212.85  Aligned_cols=261  Identities=15%  Similarity=0.049  Sum_probs=198.2

Q ss_pred             cCCCChHHHHHHHHHHhcccCC-----CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYV-----DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK  138 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~-----~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~  138 (356)
                      .++++++.+.+++.+.+.....     .+..+....++.+++++.+++++|++++    ..+++++|+|+++..++.++.
T Consensus         7 ~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~----~~v~~~~~~t~a~~~~~~~l~   82 (371)
T PF00266_consen    7 GTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPD----EEVVFTSNGTEALNAVASSLL   82 (371)
T ss_dssp             SS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTT----EEEEEESSHHHHHHHHHHHHH
T ss_pred             CccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccc----cccccccccchhhhhhhhccc
Confidence            3446667888888877653222     2223445678888999999999999862    247899999999999998885


Q ss_pred             HHHHHHHHhcCCCCCCCeEEecCCCcchHH----HHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWE----KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~----~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      ..+.          .+++|+++..+|++..    ..++..|++++.++.+.+ +.+|+++++++|++++++|++++.+|.
T Consensus        83 ~~~~----------~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~-~~~~~~~~~~~l~~~~~lv~~~~~~~~  151 (371)
T PF00266_consen   83 NPLK----------PGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPG-GSLDLEDLEEALNPDTRLVSISHVENS  151 (371)
T ss_dssp             HHGT----------TTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTT-SSCSHHHHHHHHHTTESEEEEESBETT
T ss_pred             cccc----------cccccccccccccccccccccccccchhhhcccccccc-chhhhhhhhhhhccccceEEeeccccc
Confidence            4321          1578999999999865    444567999999999875 899999999999999999999999999


Q ss_pred             ccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCC
Q 018437          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (356)
Q Consensus       215 tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~  294 (356)
                      +|.+.|+++|.++||++      ++++++|++++.+..       ++++...++|.+++++|| +++|.|+|+++++++ 
T Consensus       152 tG~~~pi~~I~~~~~~~------~~~~~vD~~~~~g~~-------~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~-  216 (371)
T PF00266_consen  152 TGVRNPIEEIAKLAHEY------GALLVVDAAQSAGCV-------PIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPE-  216 (371)
T ss_dssp             TTBBSSHHHHHHHHHHT------TSEEEEE-TTTTTTS-------S--TTTTTESEEEEESTS-TTSSSTEEEEEEEHH-
T ss_pred             ccEEeeeceehhhhhcc------CCceeEechhccccc-------cccccccccceeeecccc-cCCCCchhhheehhh-
Confidence            99999999999999999      999999999987666       356666689999999999 889999999999874 


Q ss_pred             CCcccc-ccccCCCCC-----------CCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          295 DLPDEL-VFHINYLGS-----------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       295 ~~~~~~-~~~~~~~~~-----------~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      .. +.+ .....+...           ........||.+....+++..+++.+...|++++.++..++++++.
T Consensus       217 ~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~  288 (371)
T PF00266_consen  217 AI-ERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLR  288 (371)
T ss_dssp             HH-HHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hh-hccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHH
Confidence            21 111 011111100           0001112479999889999999999988899999999999988764

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.94  E-value=8e-25  Score=212.21  Aligned_cols=262  Identities=18%  Similarity=0.129  Sum_probs=193.1

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcc-----cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMD-----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~-----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      |.....+++++.+.+++.+++.....++.     .........+++++.+++++|++..    ..+++|+|+|+++..++
T Consensus        22 ld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~----~~v~~~~g~t~~l~~~~   97 (403)
T TIGR01979        22 LDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASD----EEIVFTRGTTESINLVA   97 (403)
T ss_pred             EeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCC----CeEEEeCCHHHHHHHHH
Confidence            43444445667788888777654322221     1223445666889999999999831    24899999999998888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEec
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      .++....         -..+++|+++.++|++    +...++..|++++.++++++ +.+|+++|++++++++++|++++
T Consensus        98 ~~~~~~~---------~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~i~~~~~lv~~~~  167 (403)
T TIGR01979        98 YSWGDSN---------LKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDD-GTLDLDDLEKLLTEKTKLVAITH  167 (403)
T ss_pred             HHhhhhc---------CCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCC-CCCCHHHHHHHhccCCeEEEEEc
Confidence            7653210         0125789999999887    34666778999999999864 89999999999999999999999


Q ss_pred             CCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       211 ~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      ++|+||.+.|+++|.++|+++      |+++|+|++|+.+..+       .++...++|+++.++||++ +|.|+|++++
T Consensus       168 ~~~~tG~~~~~~~i~~~~~~~------~~~~ivD~a~~~g~~~-------~~~~~~~~d~~~~s~~K~~-gp~G~g~l~~  233 (403)
T TIGR01979       168 VSNVLGTVNPVEEIAKLAHQV------GAKVLVDGAQAVPHMP-------VDVQALDCDFYVFSGHKMY-GPTGIGVLYG  233 (403)
T ss_pred             ccccccccCCHHHHHHHHHHc------CCEEEEEchhhcCccc-------cCccccCCCEEEEeccccc-CCCCceEEEE
Confidence            999999999999999999999      9999999999865442       3444447999999999975 7999999998


Q ss_pred             eCCCCCccccccccCCCCC-CC--------------CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          291 RTKDDLPDELVFHINYLGS-DQ--------------PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +++ .. +.+.   ++..+ ..              ......||++....++++.+++.+...|++++.+++.+++++|
T Consensus       234 ~~~-~~-~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l  307 (403)
T TIGR01979       234 KEE-LL-EQMP---PFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYA  307 (403)
T ss_pred             chH-HH-hcCC---CeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            753 22 1111   01100 00              0001247888888899999999887778888888888877765

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.94  E-value=1e-24  Score=211.60  Aligned_cols=256  Identities=18%  Similarity=0.112  Sum_probs=183.6

Q ss_pred             CCCChHHHHHHHHHHhc--ccCCCcccC---c--chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASIN--KNYVDMDEY---P--VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~--~~~~~~~~~---~--~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (356)
                      ++++++.+.+++.+++.  ....++...   .  ......+++++.+++++|.+++     .+++|+|||+++.+++.++
T Consensus        12 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~-----~v~~~~g~t~al~~~l~~l   86 (404)
T PRK14012         12 TTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR-----EIVFTSGATESDNLAIKGA   86 (404)
T ss_pred             CCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC-----eEEEeCCHHHHHHHHHHHH
Confidence            44666788888887775  333333210   0  1234556788899999999762     3889999999999998877


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHh---hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      ...+.         ..+++|+++..+|+++...+..   .|++++.|++++ ++.+|+++|++++++++++|++++++|+
T Consensus        87 ~~~~~---------~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~-~g~~d~~~l~~~i~~~t~lv~~~~~~n~  156 (404)
T PRK14012         87 AHFYQ---------KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS-NGIIDLEKLEAAMRDDTILVSIMHVNNE  156 (404)
T ss_pred             HHhhc---------CCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC-CCcCCHHHHHHhcCCCCEEEEEECcCCC
Confidence            53211         1257899999999988665544   499999999986 4899999999999999999999999999


Q ss_pred             ccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCC
Q 018437          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (356)
Q Consensus       215 tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~  294 (356)
                      ||.+.|+++|.++|+++      ++++|+|++++.+..+       .++...++|++++++||+ ++|.|+|+++++++.
T Consensus       157 tG~~~~~~~I~~la~~~------g~~vivD~a~~~g~~~-------~~~~~~~~D~~~~s~~K~-~gp~g~G~l~~~~~~  222 (404)
T PRK14012        157 IGVIQDIAAIGEICRER------GIIFHVDAAQSVGKVP-------IDLSKLKVDLMSFSAHKI-YGPKGIGALYVRRKP  222 (404)
T ss_pred             ccchhhHHHHHHHHHHc------CCEEEEEcchhcCCcc-------cCcccCCCCEEEEehhhc-cCCCceEEEEEecCC
Confidence            99999999999999999      9999999999865542       333344799999999995 578899999998753


Q ss_pred             CCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      .. .   ..+.+.++........||.+....+++.+++..+ ..++.+..++..++++++
T Consensus       223 ~~-~---~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l  277 (404)
T PRK14012        223 RV-R---LEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIA-KEEMATENERIRALRDRL  277 (404)
T ss_pred             CC-C---CCceecCCCccCCccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence            32 1   1122223221111123566666666666666654 335555666666666554

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.94  E-value=4.5e-25  Score=215.36  Aligned_cols=263  Identities=16%  Similarity=0.095  Sum_probs=193.9

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcc---c--CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMD---E--YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~---~--~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      |....++++++.+.+++.+++.....++.   .  +.......+++++.+++++|++.+    ..+++|+|+|+++..++
T Consensus        36 Ld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~----~~v~~t~g~t~al~~i~  111 (424)
T PLN02855         36 LDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTS----REIVFTRNATEAINLVA  111 (424)
T ss_pred             eeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC----CEEEEeCCHHHHHHHHH
Confidence            44444555667788888777653322211   1  123344556889999999999631    24899999999998887


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEec
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      .++....         -..+++|+++.++|++    +...++..|++++.++++++ +.+|+++|++++++++++|++++
T Consensus       112 ~~~~~~~---------~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~-~~~~~~~l~~~i~~~t~lv~i~~  181 (424)
T PLN02855        112 YTWGLAN---------LKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPD-EVLDVEQLKELLSEKTKLVATHH  181 (424)
T ss_pred             HHhhhhc---------CCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCC-CCcCHHHHHHHhccCceEEEEeC
Confidence            6542100         0114689999998876    45566778999999999864 67999999999998999999999


Q ss_pred             CCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       211 ~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      ++|+||.+.|+++|.++|+++      ++++++|++|+.+..       ++++...++|.++.++||+ ++|.|+|++++
T Consensus       182 ~~n~tG~~~~~~~I~~l~~~~------g~~vivD~a~~~g~~-------~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~  247 (424)
T PLN02855        182 VSNVLGSILPVEDIVHWAHAV------GAKVLVDACQSVPHM-------PVDVQTLGADFLVASSHKM-CGPTGIGFLWG  247 (424)
T ss_pred             ccccccccCCHHHHHHHHHHc------CCEEEEEhhhhcCCc-------CCCchhcCCCEEEeecccc-cCCCccEEEEE
Confidence            999999999999999999999      999999999975433       2444445789999999995 68999999998


Q ss_pred             eCCCCCccccccccCCCCCC---------------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          291 RTKDDLPDELVFHINYLGSD---------------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      +++ .+. .+.   ++.++.               ....-..||++...++++..+++.+...|++++.++..+++++|+
T Consensus       248 ~~~-~~~-~~~---p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~  322 (424)
T PLN02855        248 KSD-LLE-SMP---PFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLY  322 (424)
T ss_pred             chh-hhh-cCC---CEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            754 321 111   111110               011112588999889999999999888899999888888877763

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.94  E-value=8.1e-25  Score=215.01  Aligned_cols=305  Identities=14%  Similarity=0.104  Sum_probs=210.6

Q ss_pred             cccccccccchhhhhcCC-CCCCCCCCCCHHHHHHHHHHHhhhcC----CCCcccccccCCCChH-HHHHHHH--HHhcc
Q 018437           11 REILSSTFASRYVRAAIP-RFKMPDNSMPKEAAYQVINDELMLDG----NPRLNLASFVTTWMEP-ECDKLVM--ASINK   82 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~-~~~lp~~~~~~~~i~~~~~~~~~~~~----~~~~~l~~~~~~~~~~-~v~~~i~--~~~~~   82 (356)
                      -++++++|..+|...+.. ..++|+.+ +..++++.+.+....+.    +++ +++.+.+....| .+.++..  +.+..
T Consensus        21 ~~~~~~~~~~~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~-~lg~g~~~~~~p~~~~~~~~~~~~~~~   98 (447)
T PRK00451         21 VKSIDELFADIPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPS-FLGAGAYDHYIPAVVDHIISRSEFYTA   98 (447)
T ss_pred             CCCHHHHHHhCCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcc-cCcccccCCcCcHHHHHHHhchhHHHh
Confidence            467889998888755443 35789875 99999999988764332    222 355555544333 3333332  22221


Q ss_pred             -cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC
Q 018437           83 -NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA  161 (356)
Q Consensus        83 -~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~  161 (356)
                       ++..++.+++..+...+.++++++++|++.     ..+++|+|||+++..++++.+..            .+++|++++
T Consensus        99 y~~~~~~~~~g~~~~~~e~~~~la~l~g~~~-----~~v~~~~g~t~~~~~~~~a~~~~------------~g~~Vlv~~  161 (447)
T PRK00451         99 YTPYQPEISQGTLQAIFEYQTMICELTGMDV-----ANASMYDGATALAEAALMAVRIT------------KRKKVLVSG  161 (447)
T ss_pred             cCCCCCccchHHHHHHHHHHHHHHHHhCCCc-----ceEEecCcHHHHHHHHHHHHHhc------------CCCEEEEeC
Confidence             233334467788888888899999999986     24789999998877776665321            147899999


Q ss_pred             CCcchHHHHHHh----hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCC
Q 018437          162 NVQVCWEKFARY----FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW  237 (356)
Q Consensus       162 ~~h~s~~~~~~~----~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~  237 (356)
                      ++|+++..+++.    .|++++.+|+++ + .+|+++|++++++++++|+++++ |+||.++|+++|.++|+++      
T Consensus       162 ~~~~~~~~~~~~~~~~~G~~~~~v~~~~-~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~------  232 (447)
T PRK00451        162 AVHPEYREVLKTYLKGQGIEVVEVPYED-G-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAG------  232 (447)
T ss_pred             ccCHHHHHHHHHHHHhCCcEEEEecCCC-C-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHC------
Confidence            999998887765    589999999986 4 99999999999999999999998 8899999999999999999      


Q ss_pred             CCcEEE--ecccccccccccCCCCcccccCCCceEEEEcCCcC----CCCCcCeeEEEEeCCCCCccccccc--------
Q 018437          238 DTPIHV--DAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY----GLVYAGVGWVVWRTKDDLPDELVFH--------  303 (356)
Q Consensus       238 ~~~l~v--D~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~----l~~P~g~g~l~~~~~~~~~~~~~~~--------  303 (356)
                      |+|+++  |....+.+.         .....++|.++.++|||    .++++|+|+++++++ ... .+...        
T Consensus       233 ~~~~iv~~d~~~~g~~~---------~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~-~~~-~~~~~~~g~~~~~  301 (447)
T PRK00451        233 GALFIVGVDPVSLGLLK---------PPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKK-LVR-QMPGRLVGETVDA  301 (447)
T ss_pred             CCEEEEEcChHHhccCC---------CcccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHH-HHh-hCCCCEeeeeccc
Confidence            999998  644322111         01234889999999997    234458999988653 221 11000        


Q ss_pred             ---cCCC----------CCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          304 ---INYL----------GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       304 ---~~~~----------~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                         ..|.          .....+ ...+++....+++.+.+++.++.+|++++.++..+++++|+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~  365 (447)
T PRK00451        302 DGKRGFVLTLQAREQHIRREKAT-SNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLA  365 (447)
T ss_pred             CCCeeeEeecccccccccccccc-ccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence               0000          000000 01133333334666667888999999999999999888764

>PRK02948 cysteine desulfurase; Provisional

Probab=99.93  E-value=3.1e-24  Score=206.56  Aligned_cols=254  Identities=15%  Similarity=0.082  Sum_probs=187.2

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcc----cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMD----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      ++++++.+.+++.+++.....++.    .+.....+.+++++.+++++|+++     ..+++|+|+++++..++.++...
T Consensus         9 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~-----~~i~~~~g~t~a~~~~~~~~~~~   83 (381)
T PRK02948          9 TTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEE-----QGIYFTSGGTESNYLAIQSLLNA   83 (381)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEeCcHHHHHHHHHHHHHHh
Confidence            446667888888777754333322    223445677889999999999976     34889999999999998887642


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHH---HHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKF---ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~---~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (356)
                      +.         ..+++|+++..+|+++...   ++..|++++.+|++++ +.+|+++|++++++++++|++++++|+||.
T Consensus        84 ~~---------~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~  153 (381)
T PRK02948         84 LP---------QNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKS-GLIRLVDLERAITPDTVLASIQHANSEIGT  153 (381)
T ss_pred             cc---------CCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCC-CCCCHHHHHHhcCCCCEEEEEECCcCCcEe
Confidence            10         1246899999999886655   4556999999999864 899999999999888999999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCc
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~  297 (356)
                      +.|+++|.++|+++      ++++|+|++++.+..       +.++...++|+++.++||+ ++|.|+|+++++++....
T Consensus       154 ~~~~~~I~~l~~~~------~~~vivD~~~~~g~~-------~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~~~~~  219 (381)
T PRK02948        154 IQPIAEIGALLKKY------NVLFHSDCVQTFGKL-------PIDVFEMGIDSLSVSAHKI-YGPKGVGAVYINPQVRWK  219 (381)
T ss_pred             ehhHHHHHHHHHHc------CCEEEEEChhhcccc-------ccCcccCCCCEEEecHHhc-CCCCcEEEEEEcCCCCCC
Confidence            99999999999999      999999988765433       2344445799999999997 479999999987542111


Q ss_pred             cccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ..      ..+.........+|.+....+++.++++.+. +++++..++..+++++|
T Consensus       220 ~~------~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l  269 (381)
T PRK02948        220 PV------FPGTTHEKGFRPGTVNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYF  269 (381)
T ss_pred             Cc------ccCCCCCCCcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            10      1111111111346777777888888887653 45677777777666655

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.93  E-value=1.4e-24  Score=210.17  Aligned_cols=254  Identities=11%  Similarity=-0.028  Sum_probs=192.7

Q ss_pred             cCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      .|...++.+.+++...+..     ..++...++.+++++++++++|.+.+    ...+++++||+++..++....++   
T Consensus        16 GP~~~~~~V~~a~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~g~~~~----~~vi~~~~gt~a~~~a~~~~~~~---   83 (401)
T PLN02409         16 GPVNIPERVLRAMNRPNED-----HRSPAFPALTKELLEDVKYIFKTKSG----TPFIFPTTGTGAWESALTNTLSP---   83 (401)
T ss_pred             CCCCCCHHHHHHhcCCCCC-----CCCHHHHHHHHHHHHHHHHHhCCCCC----CEEEEeCCcHHHHHHHHHhcCCC---
Confidence            3444557777777544321     12567788999999999999999752    24788889999988887765332   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchH--HHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh----CceEEEEecCCCcccc
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGE  217 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~  217 (356)
                                +++|+++.+.|++.  ...++..|++++.++.+.+ ..+|+++|++++++    ++++|++++++|+||.
T Consensus        84 ----------Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~  152 (401)
T PLN02409         84 ----------GDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWG-QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGV  152 (401)
T ss_pred             ----------CCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCC-CCCCHHHHHHHHhhCcCCCccEEEEEeecccccc
Confidence                      57899999999764  5777888999999999764 46899999999986    7899999999999999


Q ss_pred             cCCHHHHHHH--HHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCC
Q 018437          218 FEDVKLLHDL--LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       218 ~~~i~~I~~i--~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~  295 (356)
                      +.|+++|.++  |+++      |++++||++++.+..       ++++...++|.++.++|||+++|.|+|+++++++ .
T Consensus       153 ~~~~~~i~~l~~~~~~------g~~~vvD~v~s~g~~-------~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~-~  218 (401)
T PLN02409        153 TNDLAGVRKLLDCAQH------PALLLVDGVSSIGAL-------DFRMDEWGVDVALTGSQKALSLPTGLGIVCASPK-A  218 (401)
T ss_pred             cCCHHHHHHHHhhhcc------CcEEEEEcccccCCc-------cccccccCccEEEEcCccccCcCCCcceeEECHH-H
Confidence            9999999999  9999      999999999985444       3454445899999999999999999999998754 2


Q ss_pred             Ccccccc---ccCCCCC------CCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          296 LPDELVF---HINYLGS------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       296 ~~~~~~~---~~~~~~~------~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      +. .+..   .+.|...      ........+|.+....+++..+++.+..+|++++.++..+++++|.
T Consensus       219 ~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~  286 (401)
T PLN02409        219 LE-ASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATR  286 (401)
T ss_pred             HH-HHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            21 1110   0111110      0000011357777778899999999988999999999999888764

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.93  E-value=4.9e-24  Score=206.22  Aligned_cols=264  Identities=13%  Similarity=0.072  Sum_probs=187.3

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCC----cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      |....++++++.+.+++.+++.....+    +....+..++.+++++.+++++|.+.+     .+++++|+++++..++.
T Consensus        21 l~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~-----~v~~~~~~t~~l~~~~~   95 (397)
T TIGR01976        21 FDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPP-----EVVFGANATSLTFLLSR   95 (397)
T ss_pred             ecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCC-----eEEEeCCHHHHHHHHHH
Confidence            444445566678888887776532222    222234556778999999999999752     38899999999887776


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH----HHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecC
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE----KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~----~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      ++....          ..+++|+++.++|++..    ..++..|++++.++++++++.+|+++|++++++++++|+++++
T Consensus        96 ~~~~~~----------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~  165 (397)
T TIGR01976        96 AISRRW----------GPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAA  165 (397)
T ss_pred             HHHhcC----------CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCC
Confidence            653211          12468999999997743    5567789999999998644899999999999988999999999


Q ss_pred             CCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       212 ~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      +|++|.+.|+++|.++|+++      |+++++|+++..+..       ..++...++|.++.++|||+ +|. +|+++++
T Consensus       166 ~n~tG~~~~~~~i~~~~~~~------~~~~ivD~a~~~~~~-------~~~~~~~~~d~~~~s~~K~~-g~~-~G~l~~~  230 (397)
T TIGR01976       166 SNTLGSIVDLAAITELVHAA------GALVVVDAVHYAPHG-------LIDVQATGADFLTCSAYKFF-GPH-MGILWGR  230 (397)
T ss_pred             CCCCCccCCHHHHHHHHHHc------CCEEEEehhhhcccc-------CCCHHHcCCCEEEEechhhc-CCc-eEEEEEc
Confidence            99999999999999999999      999999999864322       23444457899999999997 554 8999886


Q ss_pred             CCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHH--------------HHHHHHHHHhccCcc
Q 018437          292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEE--------------ITFTFISSLKVCPFL  354 (356)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G--------------~~~~~~~~~~~a~~l  354 (356)
                      ++ ....-......|........-..||++...++++..+++.+...|              ++++.++..+++++|
T Consensus       231 ~~-~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  306 (397)
T TIGR01976       231 PE-LLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYL  306 (397)
T ss_pred             HH-HHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            54 221110011122211111111248898888888888888774443              566666666666554

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.92  E-value=3.4e-24  Score=204.35  Aligned_cols=251  Identities=14%  Similarity=0.109  Sum_probs=187.4

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.++.+.+++.+.+.    . ..++...++.+++++.+++++|++..    ...++|.||++++..++.++..+      
T Consensus         9 ~~~~~v~~a~~~~~~----~-~~~~~~~~~~~~~~~~la~~~g~~~~----~~~~~~~~~t~al~~~~~~~~~~------   73 (356)
T cd06451           9 NVPPRVLKAMNRPML----G-HRSPEFLALMDEILEGLRYVFQTENG----LTFLLSGSGTGAMEAALSNLLEP------   73 (356)
T ss_pred             CCCHHHHHHhCCCcc----C-CCCHHHHHHHHHHHHHHHHHhcCCCC----CEEEEecCcHHHHHHHHHHhCCC------
Confidence            445677777754332    1 13455667788999999999999542    23678888999999998876432      


Q ss_pred             hcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHH
Q 018437          147 EQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKL  223 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~  223 (356)
                             +++|+++.+.|++  +...++..|++++.+|++++ +.+|++++++++++ ++++|++++++|++|.+.|+++
T Consensus        74 -------g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~  145 (356)
T cd06451          74 -------GDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWG-EAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEG  145 (356)
T ss_pred             -------CCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCC-CCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHH
Confidence                   5689998888876  56778889999999999874 89999999999987 8999999999999999999999


Q ss_pred             HHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccccc-
Q 018437          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF-  302 (356)
Q Consensus       224 I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~-  302 (356)
                      |.++|+++      |+++++|++++.+..+       .++...++|.++.++|||+++|.|+|+++.+++ .. +.+.. 
T Consensus       146 i~~~a~~~------~~~li~D~~~~~g~~~-------~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~-~~-~~~~~~  210 (356)
T cd06451         146 IGALAKKH------DALLIVDAVSSLGGEP-------FRMDEWGVDVAYTGSQKALGAPPGLGPIAFSER-AL-ERIKKK  210 (356)
T ss_pred             HHHHHHhc------CCEEEEeeehhccCcc-------ccccccCccEEEecCchhccCCCCcceeEECHH-HH-HHHHhc
Confidence            99999999      9999999998654332       222233689999999999999999999998753 22 22111 


Q ss_pred             --ccCCCCC-------CCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          303 --HINYLGS-------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       303 --~~~~~~~-------~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                        ...|...       ....+...+|.+....+++.++++.+...|++++.++..++++++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~  272 (356)
T cd06451         211 TKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALR  272 (356)
T ss_pred             CCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence              1111100       0001122355666667788899999888999999998888887764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.92  E-value=2.7e-23  Score=216.15  Aligned_cols=286  Identities=10%  Similarity=-0.006  Sum_probs=207.0

Q ss_pred             CCHHHHHHHHHHHhhhcCC---CCcccccccCCCChHHHHHHHH---HHhcccCCCccc-CcchHHHHHHHHHHHHHHhC
Q 018437           37 MPKEAAYQVINDELMLDGN---PRLNLASFVTTWMEPECDKLVM---ASINKNYVDMDE-YPVTTELQNRCVNMIAHLFN  109 (356)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~v~~~i~---~~~~~~~~~~~~-~~~~~~le~~~~~~la~l~g  109 (356)
                      .++.++++++..+..++-.   .-+.|++ ++=-..|.+.+...   .+.+-++..|.. .++..++..++++++++++|
T Consensus       504 ~se~~~~r~~~~l~~~~~~~~~~~~plgs-ctmk~n~~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g  582 (993)
T PLN02414        504 HSEHELLRYLHRLQNKDLSLVHSMIPLGS-CTMKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCEITG  582 (993)
T ss_pred             cCHHHHHHHHHHHhhcccccccCCccCcc-cccccCchhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6778999999887665432   1122211 11111233333322   233334554433 56889999999999999999


Q ss_pred             CCCCCCCCCCeEEeCChh----HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC
Q 018437          110 TPVADDKTAVGVGTVGSS----EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE  185 (356)
Q Consensus       110 ~~~~~~~~~~~~~t~Ggt----~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~  185 (356)
                      ++.       ++++++++    ++++++++++.+.       .|. ..+.+||+|..+|.++...+.+.|++++.||+++
T Consensus       583 ~~~-------v~f~pnaga~ge~a~~~vi~~~~~~-------~Gd-~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~  647 (993)
T PLN02414        583 FDS-------FSLQPNAGAAGEYAGLMVIRAYHLS-------RGD-HHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDA  647 (993)
T ss_pred             CCe-------EEEcCCCcHHHHHHHHHHHHHHHhc-------cCC-CCCCEEEeCCCcCccCHHHHHHCCCEEEEeccCC
Confidence            964       88999888    8999988887532       121 1235899999999999999999999999999986


Q ss_pred             CccccCHHHHHHHHhh---CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc
Q 018437          186 GYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD  262 (356)
Q Consensus       186 ~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~  262 (356)
                      + |.+|+++|++++++   ++++|++++|||..|..+|+++|+++|+++      |++++||+|+........      +
T Consensus       648 ~-G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~------Galv~vDgAq~~a~~~l~------~  714 (993)
T PLN02414        648 K-GNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDN------GGQVYMDGANMNAQVGLT------S  714 (993)
T ss_pred             C-CCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHc------CCEEEEEecCHHhccCcC------C
Confidence            4 89999999999984   689999999999999999999999999999      999999999965443211      1


Q ss_pred             ccCCCceEEEEcCCcCCCCCc-----CeeEEEEeCCCCCcccccccc-----CCCCCCCCCccccCCCCh------hHHH
Q 018437          263 FRLPLVKSINVSGHKYGLVYA-----GVGWVVWRTKDDLPDELVFHI-----NYLGSDQPTFTLNFSKGS------SQII  326 (356)
Q Consensus       263 ~~~~~~Ds~~~~~hK~l~~P~-----g~g~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~tr~~------~~~~  326 (356)
                      ....++|.+.++.||++++|.     |+|+++++++ +. ..++...     .+... ..+ ...||+++      ..+.
T Consensus       715 p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~-L~-p~lPg~~v~~~~~~~~r-~~~-s~iGt~~~a~~g~al~l~  790 (993)
T PLN02414        715 PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LA-PFLPSHPVVPTGGIPRP-EKT-QPLGTISAAPWGSALILP  790 (993)
T ss_pred             ccccCCCEEEecCCccCCcCcccCCCCeeeEEEchh-hc-ccCCCCccccCCCcccc-cCC-CCcCCccchhhhhHHHHH
Confidence            123589999999999888665     5999998763 22 2221110     01100 011 12367443      5567


Q ss_pred             HHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          327 AQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       327 ~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ..|.++..+|.+|+++..++++.+|.|++
T Consensus       791 ~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~  819 (993)
T PLN02414        791 ISYTYIAMMGSEGLTDASKIAILNANYMA  819 (993)
T ss_pred             HHHHHHHHHCHhHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999975

>TIGR01814 kynureninase kynureninase

Probab=99.92  E-value=1.7e-23  Score=203.20  Aligned_cols=258  Identities=12%  Similarity=-0.001  Sum_probs=179.2

Q ss_pred             CCCChHHHHHHHHHHhccc---CC-Cccc-CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKN---YV-DMDE-YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~---~~-~~~~-~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      .++.++.+.+++..+++..   .. .+.. ......+.++.++ + +++|++++     .+++|+|+|+++..++.++..
T Consensus        36 ~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~-----~v~~~~~~t~~l~~~~~~~~~  108 (406)
T TIGR01814        36 LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKED-----EVVVMNTLTINLHLLLASFYK  108 (406)
T ss_pred             cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCC-----cEEEeCCchHHHHHHHHHhcC
Confidence            3345667788877665431   11 1111 1122334444433 4 89999863     389999999999998877522


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHH----HHHHhhCCee----EEEEecCCccccCHHHHHHHHh---hCceEEEE
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWE----KFARYFEVEL----KEVKLEEGYYVMNPVKAVELVD---ENTICVAA  208 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~----~~~~~~G~~v----~~v~~~~~~~~~d~~~L~~~i~---~~~~~v~~  208 (356)
                      +        +  .++.+|+++..+|++..    ..++..|+++    +.++.+. ++.+|++++++.++   ++|++|++
T Consensus       109 ~--------~--~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~l~~~~~~~~~~t~lv~~  177 (406)
T TIGR01814       109 P--------T--PKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPRE-EETLRLEDILDTIEKNGDDIAVILL  177 (406)
T ss_pred             C--------c--CCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCC-CCccCHHHHHHHHHhcCCCeEEEEE
Confidence            1        0  01247888889998843    3445668887    4566554 37899999998884   67899999


Q ss_pred             ecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEE
Q 018437          209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       209 ~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      +++++.+|.+.|+++|+++|+++      |++++||++|+.+..|       +++...++|.+++++|||+++|+| |.+
T Consensus       178 ~~v~~~tG~~~~~~~i~~~~~~~------g~~~~vD~aq~~G~~~-------id~~~~gvD~~~~s~hK~l~g~pG-~~l  243 (406)
T TIGR01814       178 SGVQYYTGQLFDMAAITRAAHAK------GALVGFDLAHAVGNVP-------LDLHDWGVDFACWCTYKYLNAGPG-AGA  243 (406)
T ss_pred             eccccccceecCHHHHHHHHHHc------CCEEEEEcccccCCcc-------cccccCCCCEEEEcCccccCCCCC-eEE
Confidence            99999999999999999999999      9999999999987663       455555899999999999987888 656


Q ss_pred             EEeCCCCCccccccccCCCCCCC-------------CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          289 VWRTKDDLPDELVFHINYLGSDQ-------------PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      +++++... ........|.+...             ...-..||++...++++.++++.+...|++++.++..++++||.
T Consensus       244 ~v~~~~~~-~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~  322 (406)
T TIGR01814       244 FVHEKHAH-TERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLE  322 (406)
T ss_pred             EEehhhhh-hcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            65543221 11111112211110             01112478888888999999999988888988888888887763

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.92  E-value=1.9e-23  Score=201.53  Aligned_cols=191  Identities=16%  Similarity=0.051  Sum_probs=155.0

Q ss_pred             CChHHHHHHHHHHhcccCCCc-----ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      ++++.+.+++.++.... .++     ..........+++++.+++++|++.       .++++|+++++..++.++..+ 
T Consensus        31 p~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~-------~~~~~g~t~a~~~al~~l~~~-  101 (387)
T PRK09331         31 ILTPEARKALIEYGDGY-SVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDE-------ARVTHGAREGKFAVMHSLCKK-  101 (387)
T ss_pred             CCCHHHHHHHHHHHhcc-CCCcccccccccccChHHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHhcCC-
Confidence            55577888888776421 211     1112223346678888999999974       678999999999998887542 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEe--cCCccccCHHHHHHHHhh-------CceEEEEecCC
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL--EEGYYVMNPVKAVELVDE-------NTICVAAILGS  212 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~--~~~~~~~d~~~L~~~i~~-------~~~~v~~~~~~  212 (356)
                                  +++|+++..+|++...+++..|++++.+|+  ++ ++.+|+++|++++++       ++++|++++++
T Consensus       102 ------------gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~  168 (387)
T PRK09331        102 ------------GDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYP-EYKITPEAYAEKIEEVKEETGKPPALALLTHVD  168 (387)
T ss_pred             ------------CCEEEECCCchHHHHHHHHHcCCEEEEEeCccCc-CCCcCHHHHHHHHHHhhhccCCCCEEEEEECCC
Confidence                        578999999999998889999999999998  54 488999999999963       68899999999


Q ss_pred             CcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       213 ~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +++|.+.|+++|.++|+++      |+++|+|++|+.+..|       ++....++|.++.++|||+++|.|+|++++++
T Consensus       169 ~~tG~~~~l~~I~~la~~~------g~~livD~a~~~g~~~-------~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~  235 (387)
T PRK09331        169 GNYGNLADAKKVAKVAHEY------GIPFLLNGAYTVGRMP-------VDGKKLGADFIVGSGHKSMAASAPSGVLATTE  235 (387)
T ss_pred             CCCcccccHHHHHHHHHHc------CCEEEEECCcccCCcC-------CCHHHcCCCEEEeeCcccccCCCCEEEEEECH
Confidence            9999999999999999999      9999999999876553       23333478999999999999999999998864

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.92  E-value=7.1e-23  Score=198.14  Aligned_cols=279  Identities=15%  Similarity=0.070  Sum_probs=189.3

Q ss_pred             HHHHHHHHHhhhcC---CCCcccccccCCCChHHH-HHHHHHHhcccCCCccc-----CcchHHHHHHHHHHHHHHhCCC
Q 018437           41 AAYQVINDELMLDG---NPRLNLASFVTTWMEPEC-DKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNTP  111 (356)
Q Consensus        41 ~i~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~v-~~~i~~~~~~~~~~~~~-----~~~~~~le~~~~~~la~l~g~~  111 (356)
                      +|+++++.....+.   .+..+++.+.+.+.+|.+ .++..++ . ....+..     +.+..++.+++++++++++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~p~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~   80 (398)
T cd00613           3 EVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILEN-E-FYTAYTPYQPEISQGRLQALFELQTMLCELTGMD   80 (398)
T ss_pred             HHHHHHHHHHhcCcCcccCcccccccccCCcCcHHHHHHhccc-c-CcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC
Confidence            67787776543322   222456666676665544 4444444 1 1112222     5678899999999999999997


Q ss_pred             CCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhC----CeeEEEEecCCc
Q 018437          112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFE----VELKEVKLEEGY  187 (356)
Q Consensus       112 ~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G----~~v~~v~~~~~~  187 (356)
                      .+     ...++++|+.+...++.+++..          ..++++|+++++.|.++...+..+|    ++++.+|++++ 
T Consensus        81 ~~-----~v~~~~~g~~~~~~~~~~~~~~----------~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~-  144 (398)
T cd00613          81 VA-----NASLQDEATAAAEAAGLAAIRA----------YHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEG-  144 (398)
T ss_pred             cc-----ceeccCchHHHHHHHHHHHHhc----------ccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCC-
Confidence            52     2556665554444444444321          0124789999999999998888887    99999998754 


Q ss_pred             cccCHHHHHHHHhhCceEEEEecCCCcccccCCH-HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCC
Q 018437          188 YVMNPVKAVELVDENTICVAAILGSTLTGEFEDV-KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP  266 (356)
Q Consensus       188 ~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i-~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  266 (356)
                      +.+|+++|++++.+++++|++++++ ++|.+.|+ ++|.++|+++      |+++|+|++++.+..+       .+....
T Consensus       145 ~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~------g~~livD~~~~~~~~~-------~~~~~~  210 (398)
T cd00613         145 GTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSA------GALVYVDGDNLNLTGL-------KPPGEY  210 (398)
T ss_pred             CCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhc------CCEEEEEeccccccCC-------CChHHc
Confidence            7899999999999999999999986 78999885 9999999999      9999999998653331       111123


Q ss_pred             CceEEEEcCCcCCCCC-----cCeeEEEEeCCCCCccccccc-cCCCCCC--------------------CCCccccCCC
Q 018437          267 LVKSINVSGHKYGLVY-----AGVGWVVWRTKDDLPDELVFH-INYLGSD--------------------QPTFTLNFSK  320 (356)
Q Consensus       267 ~~Ds~~~~~hK~l~~P-----~g~g~l~~~~~~~~~~~~~~~-~~~~~~~--------------------~~~~~~~~tr  320 (356)
                      ++|+++.++|||+ .|     +++|+++++++ .. +.+... ..|....                    ..+. ...+.
T Consensus       211 ~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~-~~~~~  286 (398)
T cd00613         211 GADIVVGNLQKTG-VPHGGGGPGAGFFAVKKE-LV-RFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATS-NICTG  286 (398)
T ss_pred             CCCEEEeeccccC-CCCCCCCCceeEEEEhhh-hH-hhCCCCeeccccccCCCcceEEecccchhhcccccccc-cceec
Confidence            6899999999998 65     56789987643 22 121110 0010000                    0000 01233


Q ss_pred             ChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          321 GSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       321 ~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      .......+|.+++.++.+|++++.++..++++||.
T Consensus       287 ~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~  321 (398)
T cd00613         287 QALLALMAAMYIVYLGPEGLKEIAERAHLNANYLA  321 (398)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            34456777888999999999999999999888764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.90  E-value=2.1e-22  Score=192.51  Aligned_cols=192  Identities=16%  Similarity=0.084  Sum_probs=151.0

Q ss_pred             CChHHHHHHHHHHhcccCCCccc-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      +..+.+.+++.++.. +.+++..     ........+++++.+++++|++.       +++|+|+++++..++.++..+ 
T Consensus        12 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-------i~~~~g~t~al~~~l~~~~~~-   82 (361)
T cd06452          12 RLTPEARKALIEWGD-GYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDE-------ARVTPGAREGKFAVMHSLCEK-   82 (361)
T ss_pred             CCCHHHHHHHHHHhc-ccCCccccccccccccCchHHHHHHHHHHHcCCce-------EEEeCCHHHHHHHHHHHhcCC-
Confidence            445778888877763 2222211     11111234466677999999843       789999999999988876432 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhh-------CceEEEEecCCC
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDE-------NTICVAAILGST  213 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~-------~~~~v~~~~~~~  213 (356)
                                  +++|+++.++|++...+++..|++++.+|++.+ ++.+|+++|++++++       ++++|++++++|
T Consensus        83 ------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n  150 (361)
T cd06452          83 ------------GDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDG  150 (361)
T ss_pred             ------------CCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCC
Confidence                        578999999999988889999999999999764 369999999999863       688999999999


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      ++|.+.|+++|.++|+++      ++++|+|+||+.+..++       +....++|.++.++||++++|.++|+++.++
T Consensus       151 ~tG~~~~~~~i~~~~~~~------~~~vivD~a~~~g~~~~-------~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~  216 (361)
T cd06452         151 NYGNLHDAKKIAKVCHEY------GVPLLLNGAYTVGRMPV-------SGKELGADFIVGSGHKSMAASAPIGVLATTE  216 (361)
T ss_pred             CCeeeccHHHHHHHHHHc------CCeEEEECCcccCCcCC-------CHHHcCCCEEEecCCccccCCCCeEEEEECH
Confidence            999999999999999999      99999999998654432       2222368999999999998888999998764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.90  E-value=1.1e-22  Score=194.58  Aligned_cols=234  Identities=14%  Similarity=0.009  Sum_probs=170.9

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCC-eEEecCCCcch-HH
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP-NIVTGANVQVC-WE  168 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~-~vi~s~~~h~s-~~  168 (356)
                      +....+.+++++.+++++|+++++   ..+++|+|||+++..++.++..+             ++ .|+++...|.. +.
T Consensus        31 ~~~~~~~~~~r~~la~l~~~~~~~---~~i~~t~~~t~al~~~~~~l~~~-------------~~~vlv~~~~~~~~~~~   94 (363)
T TIGR02326        31 SDYNIVVEQIRQQLLALATAEEGY---TSVLLQGSGTFAVEAVIGSAVPK-------------DGKLLVVINGAYGARIV   94 (363)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCCCHHHHHHHHHhcCCC-------------CCeEEEEeCChhhHHHH
Confidence            356667788999999999997521   24789999999999988876432             33 45555555555 35


Q ss_pred             HHHHhhCCeeEEEEecCCccccCHHHHHHHHhh--CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          169 KFARYFEVELKEVKLEEGYYVMNPVKAVELVDE--NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       169 ~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~--~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                      ..++..|++++.++++++ +.+|++++++++++  ++++|.+++++|+||.+.|+++|.++|+++      ++++++|++
T Consensus        95 ~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~------g~~livD~~  167 (363)
T TIGR02326        95 QIAEYLGIPHHVVDTGEV-EPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRH------GKVTIVDAM  167 (363)
T ss_pred             HHHHHcCCceEEEeCCCC-CCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHc------CCEEEEEcc
Confidence            778889999999999864 78999999999975  356788999999999999999999999999      999999998


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCC-C-------CCCCCccccC
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYL-G-------SDQPTFTLNF  318 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~  318 (356)
                      ++.+..|       +++...++|.++.++|||+++|.|+|+++++++.. .........+. .       .........+
T Consensus       168 ~~~g~~~-------~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  239 (363)
T TIGR02326       168 SSFGGIP-------IDIAELHIDYLISSANKCIQGVPGFGFVIARQAEL-AACKGNARSLSLDLYDQWRCMEDNHGKWRF  239 (363)
T ss_pred             ccccCcc-------cchhhcCccEEEecCccccccCCcceEEEECHHHH-HHhhcCCCceeecHHHHHHHHhccCCCCCC
Confidence            8754442       44444579999999999999999999999975421 11100000000 0       0000001224


Q ss_pred             CCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          319 SKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       319 tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                      |.+....+++..+++.+..+ |++++.++..+++++|.
T Consensus       240 t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~  277 (363)
T TIGR02326       240 TSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLV  277 (363)
T ss_pred             CCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            66677788888889887666 48888888877776653

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.90  E-value=3.8e-22  Score=191.81  Aligned_cols=214  Identities=16%  Similarity=0.123  Sum_probs=170.9

Q ss_pred             CCcccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           56 PRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        56 ~~~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      ..++|+.+.|..+ ++.+.+++.++++....+|....|..++++.+.+++.+.+|++.+.  ...+++|+|+++|+..++
T Consensus        29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~--~~eiivt~Ga~~al~~~~  106 (393)
T COG0436          29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDP--EEEIIVTAGAKEALFLAF  106 (393)
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCeEEEeCCHHHHHHHHH
Confidence            3467777777655 4578888888776543255577899999999999999999976532  233899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC--CccccCHHHHHHHHhhCceEEEEecCC
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMNPVKAVELVDENTICVAAILGS  212 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~--~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (356)
                      .++.++             +++|++++|.|++|...+.+.|++++.++++.  ++|.+|++.|+++++++|++|++++||
T Consensus       107 ~a~~~p-------------GDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~  173 (393)
T COG0436         107 LALLNP-------------GDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPN  173 (393)
T ss_pred             HHhcCC-------------CCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCC
Confidence            999875             67999999999999999999999999999853  369999999999999999999999999


Q ss_pred             Cccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCC--ceEEEE-cCCcC-CCCCcC
Q 018437          213 TLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPL--VKSINV-SGHKY-GLVYAG  284 (356)
Q Consensus       213 ~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~--~Ds~~~-~~hK~-l~~P~g  284 (356)
                      ||||++   +.+++|+++|++|      ++|+++|++|..++.+   +.....+. ...  -..+++ |..|. .++.+.
T Consensus       174 NPTGav~~~~~l~~i~~~a~~~------~i~ii~DEiY~~l~yd---~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwR  244 (393)
T COG0436         174 NPTGAVYSKEELKAIVELAREH------DIIIISDEIYEELVYD---GAEHPSILELAGARDRTITINSFSKTYGMTGWR  244 (393)
T ss_pred             CCcCcCCCHHHHHHHHHHHHHc------CeEEEEehhhhhcccC---CCCcCCHhhcCCCcceEEEEecccccccccccc
Confidence            999998   4588999999999      9999999999987663   11111111 222  235555 47785 557899


Q ss_pred             eeEEEEeCC
Q 018437          285 VGWVVWRTK  293 (356)
Q Consensus       285 ~g~l~~~~~  293 (356)
                      +|+++..++
T Consensus       245 vG~~v~~~~  253 (393)
T COG0436         245 IGWVVGPPE  253 (393)
T ss_pred             eeEeecChH
Confidence            999988643

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.89  E-value=9e-23  Score=189.66  Aligned_cols=221  Identities=13%  Similarity=0.007  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCC
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV  176 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~  176 (356)
                      -+++++.+++++|.+.      ..++|+|+|+++..++.++..+             +++|+++.++|.++..++...|+
T Consensus        61 i~~~~~~~A~~~ga~~------~~~~~~Gst~a~~~~l~al~~~-------------gd~Vlv~~~~h~s~~~~~~~~g~  121 (294)
T cd00615          61 IKEAQELAARAFGAKH------TFFLVNGTSSSNKAVILAVCGP-------------GDKILIDRNCHKSVINGLVLSGA  121 (294)
T ss_pred             HHHHHHHHHHHhCCCC------EEEEcCcHHHHHHHHHHHcCCC-------------CCEEEEeCCchHHHHHHHHHCCC
Confidence            4566777999999864      2455899999999988877542             57999999999999999999999


Q ss_pred             eeEEEEecCCc-----cccCHHHHHHHHhh--CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccc
Q 018437          177 ELKEVKLEEGY-----YVMNPVKAVELVDE--NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG  249 (356)
Q Consensus       177 ~v~~v~~~~~~-----~~~d~~~L~~~i~~--~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~  249 (356)
                      ++++++++.+.     +.+|++++++++.+  ++++|++++| |++|.+.|+++|.++|+++      +++++||+||+.
T Consensus       122 ~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~------g~~livDeA~~~  194 (294)
T cd00615         122 VPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHR------GLPVLVDEAHGA  194 (294)
T ss_pred             EEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhc------CCeEEEECcchh
Confidence            99999875432     37999999999964  6788999988 6899999999999999999      999999999986


Q ss_pred             ccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHH
Q 018437          250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY  329 (356)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~  329 (356)
                      ...  +.+..+.+....++|.++.|+||++.+|.++|++.+++.......+.......        ..+|++....+++-
T Consensus       195 ~~~--~~~~~~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~~~~--------~ttsps~~~~asl~  264 (294)
T cd00615         195 HFR--FHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEALNLH--------QSTSPSYLILASLD  264 (294)
T ss_pred             hhc--cCcccCcchhhcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHHHHH--------CCCCcHHHHHHHHH
Confidence            432  22222223334589999999999998888888888865422211111111111        12456666667777


Q ss_pred             HHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          330 YQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       330 ~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      .++..+..+| ++++++.+++++++
T Consensus       265 ~a~~~~~~~g-~~~~~~~~~~~~~~  288 (294)
T cd00615         265 VARAMMALEG-KELVEELIELALYA  288 (294)
T ss_pred             HHHHHHHHHh-HHHHHHHHHHHHHH
Confidence            7777665555 33566666666554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.89  E-value=2.7e-21  Score=197.99  Aligned_cols=288  Identities=9%  Similarity=-0.028  Sum_probs=207.8

Q ss_pred             CCCHHHHHHHHHHHhhhcCC---CCccccc-----ccCCCChHHHHHHHHHHhcccCCCc-ccCcchHHHHHHHHHHHHH
Q 018437           36 SMPKEAAYQVINDELMLDGN---PRLNLAS-----FVTTWMEPECDKLVMASINKNYVDM-DEYPVTTELQNRCVNMIAH  106 (356)
Q Consensus        36 ~~~~~~i~~~~~~~~~~~~~---~~~~l~~-----~~~~~~~~~v~~~i~~~~~~~~~~~-~~~~~~~~le~~~~~~la~  106 (356)
                      ..++.+++++++++..++..   ..+.|++     +......|.   ...++++.+++.| +.++++.++..++.+++++
T Consensus       478 ~~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~~~~~~p~---s~~eF~t~hPyqp~e~sQG~lq~i~elq~~l~e  554 (954)
T PRK12566        478 HHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPI---TWPEFAQLHPFAPREQAEGYRAMIDELEAWLCA  554 (954)
T ss_pred             CCCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCcHHhhhcc---cchhhhcCCCCCchhhhcCHHHHHHHHHHHHHH
Confidence            47899999999988776532   1223433     111111121   2345566677777 6688999999999999999


Q ss_pred             HhCCCCCCCCCCCeEEeC-ChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC
Q 018437          107 LFNTPVADDKTAVGVGTV-GSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE  185 (356)
Q Consensus       107 l~g~~~~~~~~~~~~~t~-Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~  185 (356)
                      ++|++.       ..+-. +|+.+++.++++.+.++..    +|. ..+.+|++|...|.+....+...|++++.||+|+
T Consensus       555 LtGmd~-------~Sl~p~sGA~gE~A~Lmair~yh~~----~Ge-~~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~  622 (954)
T PRK12566        555 ITGFDA-------ICMQPNSGAQGEYAGLLAIRRYHRS----RGQ-SQRDICLIPSSAHGTNPASAQMAGMRVVIVECDP  622 (954)
T ss_pred             HHCCCe-------EeecCCchHHHHHHHHHHHHHHHHh----cCC-CCCCEEEecccccccCHHHHHHCCCEEEEeccCC
Confidence            999985       23444 7788888888888765432    222 2256899999999777777888899999999986


Q ss_pred             CccccCHHHHHHHHh---hCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc
Q 018437          186 GYYVMNPVKAVELVD---ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD  262 (356)
Q Consensus       186 ~~~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~  262 (356)
                       +|.+|+++|+++++   +++.+|++++|++..+..+|+++|+++|+++      |+++++|+|+.....++..      
T Consensus       623 -~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~------Galv~vDgA~~~a~~~l~~------  689 (954)
T PRK12566        623 -DGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQH------GGQVYMDGANLNAQVGLAR------  689 (954)
T ss_pred             -CCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHc------CCEEEEEeeChhhccCCCC------
Confidence             48999999999997   5788899999999866667899999999999      9999999998643332111      


Q ss_pred             ccCCCceEEEEcCCcCCCCCcCeeEEEEeC---CCCCccccccccCCCC----CC---CCCccccCCCChhHHHHHHHHH
Q 018437          263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRT---KDDLPDELVFHINYLG----SD---QPTFTLNFSKGSSQIIAQYYQF  332 (356)
Q Consensus       263 ~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~---~~~~~~~~~~~~~~~~----~~---~~~~~~~~tr~~~~~~~~~~~l  332 (356)
                      ....|+|.++.++|||+++|.|.|..++..   ++.+..-+   +.+.+    +.   .......++-++..+...|.++
T Consensus       690 Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfL---p~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi  766 (954)
T PRK12566        690 PADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFV---ANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYI  766 (954)
T ss_pred             hhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhc---cCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHH
Confidence            124589999999999999998888877654   12111111   11211    10   1111233566666788999999


Q ss_pred             HHhCHHHHHHHHHHHHhccCccc
Q 018437          333 IRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       333 ~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ..+|.+ +.+....++.+|+|++
T Consensus       767 ~~lG~e-Lk~aa~~ailnAnYla  788 (954)
T PRK12566        767 AMMGPQ-LADASEVAILSANYLA  788 (954)
T ss_pred             HHHCHH-HHHHHHHHHHHHHHHH
Confidence            999999 9999998899998875

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.88  E-value=1.2e-21  Score=204.41  Aligned_cols=269  Identities=16%  Similarity=0.053  Sum_probs=185.9

Q ss_pred             cccccCCCCh-HHHHHHHHHHhcc---cCCC-cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           60 LASFVTTWME-PECDKLVMASINK---NYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        60 l~~~~~~~~~-~~v~~~i~~~~~~---~~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      |....+++++ ..+.+++..++..   |++. +..+....++.+++++.+++++|+++++   ..+++|+|+|+|+.++.
T Consensus        38 LD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~---~~VvFtsnaT~alnlva  114 (805)
T PLN02724         38 LDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSD---YACVFTSGATAALKLVG  114 (805)
T ss_pred             EeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccc---eEEEEeCChHHHHHHHH
Confidence            3333344433 4566666555432   3322 1123455677789999999999997522   34799999999999887


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH---HHhhCCeeEEEEecC-------CccccCH--HHHHHHHh--
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF---ARYFEVELKEVKLEE-------GYYVMNP--VKAVELVD--  200 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~---~~~~G~~v~~v~~~~-------~~~~~d~--~~L~~~i~--  200 (356)
                      .++.  +          ..+++|+++...|.++...   ++..|++++.++++.       ..+.+|+  ++|++.+.  
T Consensus       115 ~~l~--~----------~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~  182 (805)
T PLN02724        115 ETFP--W----------SSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSK  182 (805)
T ss_pred             HHCC--C----------CCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhh
Confidence            6542  1          1146899999999885543   344599999999862       1245544  66776642  


Q ss_pred             --------hCceEEEEecCCCcccccCCHHHHHHHHHHhhhccC---CCCcEEEecccccccccccCCCCcccccCCCce
Q 018437          201 --------ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETG---WDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVK  269 (356)
Q Consensus       201 --------~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~---~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D  269 (356)
                              +++++|++++.+|.+|.+.|++.|..+++.. .++.   .++++++|+||+.+..       +++++..++|
T Consensus       183 l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~-~~~~~~~g~~~v~vDaaQ~~g~~-------piDv~~~~~D  254 (805)
T PLN02724        183 LQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQ-HSNFSKSGRWMVLLDAAKGCGTS-------PPDLSRYPAD  254 (805)
T ss_pred             hccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhc-ccccccCcceEEEeehhhhcCCC-------CCChhhcCCC
Confidence                    4568999999999999999999876555532 0000   0357999999987655       4566666899


Q ss_pred             EEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCC-----------------CCccccCCCChhHHHHHHHHH
Q 018437          270 SINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ-----------------PTFTLNFSKGSSQIIAQYYQF  332 (356)
Q Consensus       270 s~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~tr~~~~~~~~~~~l  332 (356)
                      ++++|+|||+++|.|+|+|++|++ .+. .  ..+.+.+++.                 ...-..||.+...++++.+++
T Consensus       255 fl~~S~HK~~GgP~G~G~L~vr~~-~~~-~--l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal  330 (805)
T PLN02724        255 FVVVSFYKIFGYPTGLGALLVRRD-AAK-L--LKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGF  330 (805)
T ss_pred             EEEEecceeccCCCCceEEEEehh-hhh-h--hcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHH
Confidence            999999999988999999999864 221 1  1223333321                 011135899999999999999


Q ss_pred             HHhCHHHHHHHHHHHHhccCccc
Q 018437          333 IRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       333 ~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      +.+...|++++.++..++++||.
T Consensus       331 ~~l~~ig~~~I~~~~~~L~~~l~  353 (805)
T PLN02724        331 KLLNRLTISAIAMHTWALTHYVA  353 (805)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHH
Confidence            99988889988898888888764

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.88  E-value=1.8e-21  Score=185.19  Aligned_cols=252  Identities=12%  Similarity=0.042  Sum_probs=177.1

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      |..+++.+.+++....+    ++  .+....+.+++++.+++++|++++.   ..++++.|||+++..++.++..+    
T Consensus         7 p~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~la~~~~~~~~~---~~i~~~~~gt~~l~~~~~~~~~~----   73 (355)
T TIGR03301         7 PLSTSATVRDAMLVDWC----HW--DSEFNDVTDQVRDRLLALAGGDDNH---TCVLLQGSGTFAVEATIGSLVPR----   73 (355)
T ss_pred             CCCCCHHHHHHhhhhcc----CC--CHHHHHHHHHHHHHHHHHhcCCCCC---cEEEEeCCcHHHHHHHHHhccCC----
Confidence            33455777777765322    22  1234467789999999999998621   24678999999999998876532    


Q ss_pred             HHhcCCCCCCCeEE-ecCCCcch-HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh--CceEEEEecCCCcccccCC
Q 018437          145 RKEQGKPYDKPNIV-TGANVQVC-WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE--NTICVAAILGSTLTGEFED  220 (356)
Q Consensus       145 ~~~~g~~~~~~~vi-~s~~~h~s-~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~--~~~~v~~~~~~~~tG~~~~  220 (356)
                               +++++ +....|.. +..+++..|++++.++++++ +.+|+++|++++++  +++.|++++++|++|.+.|
T Consensus        74 ---------~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~  143 (355)
T TIGR03301        74 ---------DGKLLVLINGAYGERLAKICEYLGIPHTDLNFSEY-EPPDLNRIEEALAADPDITHVATVHHETTTGILNP  143 (355)
T ss_pred             ---------CCeEEEECCCchhhHHHHHHHHcCCceEEEecCCC-CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhH
Confidence                     34544 44455544 56778889999999998764 78999999999975  4567888999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccc
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL  300 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~  300 (356)
                      +++|.++|+++      ++++++|++++.+..+       +++...++|.+..++|||+++|.|+|+++++++ ... .+
T Consensus       144 ~~~i~~l~~~~------~~~livD~~~s~g~~~-------~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~~-~~  208 (355)
T TIGR03301       144 LEAIAKVARSH------GAVLIVDAMSSFGAIP-------IDIEELDVDALIASANKCLEGVPGFGFVIARRD-LLE-AS  208 (355)
T ss_pred             HHHHHHHHHHc------CCEEEEEeccccCCcc-------cchhhcCccEEEecCCcccccCCceeEEEECHH-HHH-Hh
Confidence            99999999999      9999999987654332       344444789999999999999999999998754 221 11


Q ss_pred             c-cccCCCCC-------CCCCccccCCCChhHHHHHHHHHHHhCHHH-HHHHHHHHHhccCcc
Q 018437          301 V-FHINYLGS-------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEE-ITFTFISSLKVCPFL  354 (356)
Q Consensus       301 ~-~~~~~~~~-------~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G-~~~~~~~~~~~a~~l  354 (356)
                      . ...++...       ........+|.+....+++..+++.+..+| +++..++..++++++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~  271 (355)
T TIGR03301       209 AGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELL  271 (355)
T ss_pred             hCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            1 00011000       000011234666666777888888887766 777777777666554

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.88  E-value=2.4e-21  Score=181.89  Aligned_cols=256  Identities=13%  Similarity=0.066  Sum_probs=197.9

Q ss_pred             cCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      .|...++.+.+++..-.   .+  ..++.+..+..++++.+.++++.+.    ....+++.+||.++..++..+..+   
T Consensus        12 GP~~v~~~V~~am~~~~---~~--h~s~~F~~~~~~~~~~L~~v~~t~~----~~~~ll~gsGt~amEAav~sl~~p---   79 (383)
T COG0075          12 GPVPVPPRVLLAMARPM---VG--HRSPDFVGIMKEVLEKLRKVFGTEN----GDVVLLSGSGTLAMEAAVASLVEP---   79 (383)
T ss_pred             CCCCCCHHHHHHhcCCC---CC--CCCHHHHHHHHHHHHHHHHHhcCCC----CcEEEEcCCcHHHHHHHHHhccCC---
Confidence            34445567776664322   12  3466788899999999999999883    134577788898888888877653   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh--CceEEEEecCCCcccccC
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE--NTICVAAILGSTLTGEFE  219 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~--~~~~v~~~~~~~~tG~~~  219 (356)
                                +++|++....-+.  +...++..|++++.+.++.. -.+|++++++++++  +.+.|.++|..|.||...
T Consensus        80 ----------gdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg-~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvln  148 (383)
T COG0075          80 ----------GDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWG-EAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLN  148 (383)
T ss_pred             ----------CCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhcCCCccEEEEEeccCcccccC
Confidence                      5677776666554  88999999999999999875 68999999999985  467899999999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcc-
Q 018437          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD-  298 (356)
Q Consensus       220 ~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~-  298 (356)
                      |+++|+++||+|      |.+++||++.+.+..       ++++...++|.+..+++|++++|+|.|++.++++.+-.- 
T Consensus       149 pl~~I~~~~k~~------g~l~iVDaVsS~Gg~-------~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~  215 (383)
T COG0075         149 PLKEIAKAAKEH------GALLIVDAVSSLGGE-------PLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIE  215 (383)
T ss_pred             cHHHHHHHHHHc------CCEEEEEecccCCCc-------ccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHh
Confidence            999999999999      999999998775544       345556699999999999999999999999987533110 


Q ss_pred             -----ccccccC-CCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          299 -----ELVFHIN-YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       299 -----~~~~~~~-~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                           .++.+.. |..........+.|.+....+++..+|+.+-.+|++++++++..++++++
T Consensus       216 ~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r  278 (383)
T COG0075         216 ERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALR  278 (383)
T ss_pred             cCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                 1111111 11111111345689999999999999999999999999999999998764

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.88  E-value=3.6e-21  Score=184.38  Aligned_cols=252  Identities=12%  Similarity=0.011  Sum_probs=177.5

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      |..+.+.+.+++...+    .++  .+......+++++.+++++|.+++.   ...++|.+||+++..++.++..+    
T Consensus        13 P~~~~~~~~~a~~~~~----~~~--~~~~~~~~~~~~~~l~~l~~~~~~~---~~i~~~~~gt~~l~~~~~~l~~~----   79 (368)
T PRK13479         13 PLTTSRTVREAMLRDW----GSW--DDDFNALTASVRAKLVAIATGEEGY---TCVPLQGSGTFSVEAAIGSLVPR----   79 (368)
T ss_pred             CCCCCHHHHHHhCCCC----CCC--ChHHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCCcHHHHHHHHHhccCC----
Confidence            3344566666654332    222  2334567789999999999986421   33678999999999998887432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchH--HHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhC--ceEEEEecCCCcccccCC
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN--TICVAAILGSTLTGEFED  220 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~--~~~v~~~~~~~~tG~~~~  220 (356)
                               +++|++..+.++..  ...++..|++++.||++++ +.+|+++++++++++  +++|++++++|+||.+.|
T Consensus        80 ---------~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~  149 (368)
T PRK13479         80 ---------DGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGED-EPPDAAEVEAALAADPRITHVALVHCETTTGILNP  149 (368)
T ss_pred             ---------CCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCCC-CCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC
Confidence                     45677766666554  4778889999999999764 789999999999754  567889999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccc
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL  300 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~  300 (356)
                      +++|.++|+++      ++++++|++++.+..       +.++...++|.++.++|||+++|.|+|+++++++ .+ +.+
T Consensus       150 ~~~i~~l~~~~------~~~livDa~~~~g~~-------~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~-~~-~~~  214 (368)
T PRK13479        150 LDEIAAVAKRH------GKRLIVDAMSSFGAI-------PIDIAELGIDALISSANKCIEGVPGFGFVIARRS-EL-EAC  214 (368)
T ss_pred             HHHHHHHHHHc------CCEEEEEcccccCCc-------cccccccCceEEEecCccccccCCCceEEEECHH-HH-HHh
Confidence            99999999999      999999987754322       2344444789999999999999999999998753 22 111


Q ss_pred             cc-ccCCCCC-------CCCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCcc
Q 018437          301 VF-HINYLGS-------DQPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFL  354 (356)
Q Consensus       301 ~~-~~~~~~~-------~~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l  354 (356)
                      .. ..+|...       ........+|.+....+++.++++.+..+ ++++.+++..+++++|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l  277 (368)
T PRK13479        215 KGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTL  277 (368)
T ss_pred             hcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            10 0111000       00001112366666678888888887655 4777777777777665

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.88  E-value=6e-21  Score=187.54  Aligned_cols=277  Identities=15%  Similarity=0.054  Sum_probs=186.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhcccC--CCccc-----CcchHHHHHHHHHHHHHHhCCC
Q 018437           39 KEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNY--VDMDE-----YPVTTELQNRCVNMIAHLFNTP  111 (356)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~--~~~~~-----~~~~~~le~~~~~~la~l~g~~  111 (356)
                      ..++.+.+.+..... ...++|.. .-+.++|.+.+++.+.+.+.+  +++..     ......+|+.+++.+++++|++
T Consensus        19 d~~~~~~~~~~~~~~-~~~l~l~~-sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~   96 (452)
T PTZ00094         19 DPELYELIEKEKERQ-IEGLELIA-SENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLD   96 (452)
T ss_pred             CHHHHHHHHHHHHHH-HcCeeEec-ccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCC
Confidence            455666665543322 12233322 122456889998887776443  33322     1235677777899999999997


Q ss_pred             CCCCCCCCeEEe---CChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHh----------hCCee
Q 018437          112 VADDKTAVGVGT---VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY----------FEVEL  178 (356)
Q Consensus       112 ~~~~~~~~~~~t---~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~----------~G~~v  178 (356)
                      +++     .+++   ++|+++|+.++.++.++             +++|+++...|.+....+..          .++++
T Consensus        97 ~~~-----~~~~~~~~sgt~an~~v~~al~~~-------------gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~  158 (452)
T PTZ00094         97 PEE-----WGVNVQPYSGSPANFAVYTALLQP-------------HDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFES  158 (452)
T ss_pred             ccc-----ceeecCCCchHHHHHHHHHHhcCC-------------CCEEEecccccCCcccccccccccccccceeeeee
Confidence            632     3344   78999999999887432             57899999999876544321          12334


Q ss_pred             EEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCC
Q 018437          179 KEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP  257 (356)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~  257 (356)
                      ..++++.+ +.+|+++|++++.+ ++++|++.  ++.+|.+.|+++|.++|+++      |+++|||++|+.+..+.  +
T Consensus       159 ~~~~~~~~-g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~------ga~l~vDaaq~~G~i~~--~  227 (452)
T PTZ00094        159 LPYQVNEK-GLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSV------GAYLMADIAHTSGLVAA--G  227 (452)
T ss_pred             eecccCCC-CCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHc------CCEEEEeccchhccccC--C
Confidence            45556664 89999999999965 66666543  44689999999999999999      99999999999877742  1


Q ss_pred             CCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCH
Q 018437          258 DLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF  337 (356)
Q Consensus       258 ~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~  337 (356)
                      ..+..  ..++|.+++++|||+++|.| |+++++++ .. ..+.   .+.... ..+.+.|+.+...++++.++++.+..
T Consensus       228 ~~~~~--~~~~D~l~~S~hK~l~GP~G-g~l~~~~~-~~-~~l~---~~~~~~-~~p~~~G~~~~~~iaal~~al~~~~~  298 (452)
T PTZ00094        228 VLPSP--FPYADVVTTTTHKSLRGPRS-GLIFYRKK-VK-PDIE---NKINEA-VFPGLQGGPHNHQIAAIAVQLKEVQS  298 (452)
T ss_pred             CCCCC--CCCCcEEEcCCccCCCCCCc-eEEEEecc-cc-hHHH---Hhhccc-cCCCCCCCchHHHHHHHHHHHHHHhC
Confidence            11111  23799999999999999998 77777653 22 1110   001000 00113466667778999999999977


Q ss_pred             HHHHHHHHHHHhccCccc
Q 018437          338 EEITFTFISSLKVCPFLV  355 (356)
Q Consensus       338 ~G~~~~~~~~~~~a~~l~  355 (356)
                      .+++++.++..+++++|.
T Consensus       299 ~~~~~~~~~i~~l~~~l~  316 (452)
T PTZ00094        299 PEWKEYAKQVLKNAKALA  316 (452)
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            787888888888877764

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.85  E-value=7e-20  Score=169.57  Aligned_cols=225  Identities=14%  Similarity=0.105  Sum_probs=173.9

Q ss_pred             HHHHHHHHHhhhcCCCCcccccccCCCCh-HHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCC
Q 018437           41 AAYQVINDELMLDGNPRLNLASFVTTWME-PECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA  118 (356)
Q Consensus        41 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~  118 (356)
                      .++-++.........+.. |+.+.++.++ ..+.+++..+.... ...|...-+..++.+.+++++++++|.....  ..
T Consensus        18 ~vw~e~~~la~e~~~~~~-LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~--~~   94 (420)
T KOG0257|consen   18 YVWTEINRLAAEHKVPNP-LGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDP--DD   94 (420)
T ss_pred             cHHHHHHHHHHhcCCCCc-ccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCC--cc
Confidence            455555544443333332 6777777665 47788888777653 4456677789999999999999998887532  34


Q ss_pred             CeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec-------CCccccC
Q 018437          119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-------EGYYVMN  191 (356)
Q Consensus       119 ~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~-------~~~~~~d  191 (356)
                      .+.+|.|+.+++..++++++++             +++|++.+|.+.+|....++.|..+++|+..       ..+|.+|
T Consensus        95 eVlVT~GA~~ai~~~~~~l~~~-------------GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D  161 (420)
T KOG0257|consen   95 EVLVTAGANEAISSALLGLLNP-------------GDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLD  161 (420)
T ss_pred             cEEEecCchHHHHHHHHHHcCC-------------CCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCC
Confidence            5899999999999999999875             7899999999999999999999999999987       3469999


Q ss_pred             HHHHHHHHhhCceEEEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCC
Q 018437          192 PVKAVELVDENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPL  267 (356)
Q Consensus       192 ~~~L~~~i~~~~~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~  267 (356)
                      .+.|+.++.++|++|+++.|+||||.+   ..|++|+++|++|      |+++++|++|..++.+   +..-..+. +++
T Consensus       162 ~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~------~~lvisDevYe~~v~d---~~~h~r~aslPg  232 (420)
T KOG0257|consen  162 PEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKH------GLLVISDEVYEWLVYD---GNKHIRIASLPG  232 (420)
T ss_pred             hHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHC------CEEEEEhhHhHHHhhC---CCcceeeecCCc
Confidence            999999999999999999999999998   5689999999999      9999999999987652   21001111 232


Q ss_pred             c--eEEE-EcCCcC-CCCCcCeeEEEE
Q 018437          268 V--KSIN-VSGHKY-GLVYAGVGWVVW  290 (356)
Q Consensus       268 ~--Ds~~-~~~hK~-l~~P~g~g~l~~  290 (356)
                      .  -.++ .|+.|. +++.|..|+++.
T Consensus       233 m~ertitvgS~gKtf~~TGWrlGW~ig  259 (420)
T KOG0257|consen  233 MYERTITVGSFGKTFGVTGWRLGWAIG  259 (420)
T ss_pred             hhheEEEeccccceeeeeeeeeeeeec
Confidence            1  2233 347785 556788999987

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.85  E-value=1.9e-19  Score=166.96  Aligned_cols=304  Identities=13%  Similarity=0.041  Sum_probs=214.0

Q ss_pred             hhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCC---CCcccccccCCCChHHHHHH---HHHHhcccCCCccc-CcchHHH
Q 018437           24 RAAIPRFKMPDNSMPKEAAYQVINDELMLDGN---PRLNLASFVTTWMEPECDKL---VMASINKNYVDMDE-YPVTTEL   96 (356)
Q Consensus        24 ~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~v~~~---i~~~~~~~~~~~~~-~~~~~~l   96 (356)
                      .+.+.....|....++-++++++.++..++..   .-+.|++ ++=-..+.+.+.   ...+.+-++..+.. .++..++
T Consensus        32 ~~~~~r~~~~~Pe~SE~e~~Rh~~rLs~kn~avd~~m~PLGS-CTMK~Np~~e~~~~~~p~f~~iHP~~pe~~vqG~l~l  110 (496)
T COG1003          32 PHPVFRRYPPLPEHSETEMVRHYTRLSQKDLAVDRGMIPLGS-CTMKLNPKAEMKPATWPEFANIHPFQPEEQVQGYLEL  110 (496)
T ss_pred             CcHHhhcCCCCccccHHHHHHHHHHHHhcccccccCccCCcc-cccccCchhhcccccccchhhcCCCCChHHHHHHHHH
Confidence            33333334445568999999999887765421   1122221 111111222222   22445556666544 5699999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCC
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV  176 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~  176 (356)
                      ..++.+|++++.|++.      ...--..|+++-..++++.+.++..+    | ...+.++++|+.+|-.....+.+.|.
T Consensus       111 i~~Lq~~L~~ITG~Da------vsLQP~AGAqGE~aGll~Ir~YHe~r----G-~~~R~~~LIP~SAHGTNPASAam~G~  179 (496)
T COG1003         111 IYELQEWLKEITGMDA------VSLQPNAGAQGEYAGLLAIRAYHESR----G-EGHRNICLIPDSAHGTNPASAAMAGF  179 (496)
T ss_pred             HHHHHHHHHHhcCCce------eeccCCCCcchhhHHHHHHHHHHHHc----C-CCcCcEEEeeccccCCChhhHhhcCc
Confidence            9999999999999985      23344577888999999988876532    2 12356899999999999999999999


Q ss_pred             eeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccccc-CCHHHHHHHHHHhhhccCCCCcEEEeccccccccccc
Q 018437          177 ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (356)
Q Consensus       177 ~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~-~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (356)
                      +|+.|+++++ |.+|+++|++++.+++.++.+|+|||- |.+ .+|.+|+++.+++      |..+..|||--...+...
T Consensus       180 ~VV~V~~~~~-G~VDlddLk~k~~~~~AalMiTnPsT~-GvFE~~I~ei~~ivH~~------Gg~vY~DGANlNA~vG~~  251 (496)
T COG1003         180 KVVVVKCDEN-GNVDLDDLRAKAEDNLAALMITNPSTL-GVFEEDIREICEIVHEA------GGQVYYDGANLNAIVGLA  251 (496)
T ss_pred             eEEEEecCCC-CCccHHHHHHHhccceeEEEeccCccc-ccchhhHHHHHHHHHHc------CCEEEecCcchhhhhccc
Confidence            9999999985 999999999999999999999999998 999 5799999999999      999999999655444323


Q ss_pred             CCCCcccccCCCceEEEEcCCcCCCCC-----cCeeEEEEeCCCCCccccccc------cCCCCCC-CC-Ccc--ccCCC
Q 018437          256 YPDLEWDFRLPLVKSINVSGHKYGLVY-----AGVGWVVWRTKDDLPDELVFH------INYLGSD-QP-TFT--LNFSK  320 (356)
Q Consensus       256 ~~~~~~~~~~~~~Ds~~~~~hK~l~~P-----~g~g~l~~~~~~~~~~~~~~~------~~~~~~~-~~-~~~--~~~tr  320 (356)
                      +|   -   ..|+|.+-++.||.++.|     +|.|-+.++..  +..-++..      ..|.... .. ...  -..--
T Consensus       252 rP---G---d~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~--L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~G  323 (496)
T COG1003         252 RP---G---DMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAH--LAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYG  323 (496)
T ss_pred             cc---c---ccccceEEeecccccccCCCCCCCCCCceehHhh--ccccCCCCcccCCCccccccCCCCccceeeccccC
Confidence            32   2   348999999999996555     68888988742  22222110      1111110 00 000  01112


Q ss_pred             ChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          321 GSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       321 ~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ++......|+++..+|.+|+++.-+.+.-+|.|++
T Consensus       324 s~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia  358 (496)
T COG1003         324 SASILPIAWAYIRMMGADGLKQASEVAVLNANYIA  358 (496)
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Confidence            34456788999999999999999999999999975

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.85  E-value=2.7e-19  Score=171.63  Aligned_cols=164  Identities=16%  Similarity=0.065  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhC
Q 018437           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFE  175 (356)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G  175 (356)
                      ...+.++.+++++|++.       ..+++||++++..++.++..+             +++|+++.+.|++....++..|
T Consensus        52 ~~~~~~e~lA~~~g~~~-------~~i~~g~~~a~~~~~~~l~~~-------------gd~Vl~~~~~h~s~~~~~~~~g  111 (370)
T TIGR02539        52 PIHDFLEDLAEFLGMDE-------ARVTHGAREGKFAVMHALCKE-------------GDWVVLDGLAHYTSYVAAERAG  111 (370)
T ss_pred             HHHHHHHHHHHHhCCCc-------eEEECChHHHHHHHHHHhhCC-------------CCEEEECCcccHHHHHHHHHcC
Confidence            33456677999999985       567899999999988877532             5789999999999888889999


Q ss_pred             CeeEEEEecC-CccccCHHHHHHHHhh-------CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccc
Q 018437          176 VELKEVKLEE-GYYVMNPVKAVELVDE-------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS  247 (356)
Q Consensus       176 ~~v~~v~~~~-~~~~~d~~~L~~~i~~-------~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~  247 (356)
                      ++++.+|.++ +++.+|+++|++++++       ++++|++++++|++|.+.|+++|.++|+++      ++++++|+||
T Consensus       112 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~------~~~livDea~  185 (370)
T TIGR02539       112 LNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREK------GVPLLLNCAY  185 (370)
T ss_pred             CEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHc------CCeEEEECcc
Confidence            9999999864 2489999999999963       578999999999999999999999999999      9999999999


Q ss_pred             ccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          248 GGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +.+..+       .+....++|.++.++||+++++.++|+++.++
T Consensus       186 ~~g~~~-------~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~  223 (370)
T TIGR02539       186 TVGRMP-------VSAKEIGADFIVGSGHKSMAASGPCGVLGMSE  223 (370)
T ss_pred             ccCCcC-------CCHHHcCCCEEEeeCcccccCCCCEEEEEECH
Confidence            875432       11222358999999999998777789998764

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.85  E-value=2.9e-19  Score=170.24  Aligned_cols=302  Identities=15%  Similarity=0.105  Sum_probs=181.6

Q ss_pred             ccccccc-cchhhhhcCC-CCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccccccCC-CChHHHHHHHH---HHhcc-cC
Q 018437           12 EILSSTF-ASRYVRAAIP-RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT-WMEPECDKLVM---ASINK-NY   84 (356)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~-~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~v~~~i~---~~~~~-~~   84 (356)
                      ++++++| ..+|..-.+. ...+|+. +++.+++++++++..++......++.+..+ ..++.+.+.+.   +++.. .+
T Consensus        21 ~sieeL~~~~IP~~i~~~~~~~lp~~-~sE~e~~r~~~~la~kN~~~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtP   99 (429)
T PF02347_consen   21 KSIEELFDSDIPEEIRLKKPLNLPEP-LSEYELLRHLERLASKNKSYTSFIGAGSYTHYVPAVIDRNILSRPEFYTAYTP   99 (429)
T ss_dssp             SSTGGGG-TTS-GGG-SS-----------HHHHHHHHHHHHTTS--TTS---CTTT-----HHHHH-HHCCHHCCCS-ST
T ss_pred             CCHHHHhhhhCCHhhcCCCCCCCCCC-CCHHHHHHHHHHHHhcCCCCCccccccccCceeChhhcCccccChhhhccCCC
Confidence            6899999 9999988776 4577765 899999999999887765422223333222 33444554232   44543 46


Q ss_pred             CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 018437           85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (356)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h  164 (356)
                      ++++.+++..+...+.+.++++++|++.     ....+-.|+|.+--.++++.+.. ++         ++.+|++|...|
T Consensus       100 YQpEisQG~Lq~lfe~Qs~i~eLTGmdv-----aNaSlyd~atA~aEa~~ma~r~~-~~---------~~~~vlv~~~~h  164 (429)
T PF02347_consen  100 YQPEISQGRLQALFEYQSMICELTGMDV-----ANASLYDGATAAAEAMLMAVRAT-KR---------KRNKVLVPESLH  164 (429)
T ss_dssp             TSGGGBHHHHHHHHHHHHHHHHHHTSSE-----E-SEBSSCCHHHHHHHHHHHHHH-TT------------EEEEETTS-
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhCCCc-----cCCCCCChhHHHHHHHHHHHHhc-cc---------CCcEEEEcCCcC
Confidence            6777789999999999999999999985     11234445554433333333322 10         135899999999


Q ss_pred             chHHHHHH----hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCc
Q 018437          165 VCWEKFAR----YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (356)
Q Consensus       165 ~s~~~~~~----~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~  240 (356)
                      +.+...++    ..|++++.+|.+++ +..|        ++++.+|++++||+. |.++|+++|.+++|++      |..
T Consensus       165 P~~~~v~~t~a~~~g~~iv~~~~~~~-~~~d--------~~~~a~v~vq~Pn~~-G~~ed~~~i~~~~h~~------gal  228 (429)
T PF02347_consen  165 PQTRAVLRTYAAPLGIEIVEVPLDED-GTTD--------DDDTAAVMVQNPNTF-GVFEDIKEIADIAHAA------GAL  228 (429)
T ss_dssp             CHHHHHHHHHCCHCCEEEEEE-BBTT-CSB---------STTEEEEEEESS-TT-SB--THHHHHHHHHHT------T-E
T ss_pred             hhhHHHHHHhhhhCCeEEEEeccccc-CCcc--------ccCeEEEEeecCCCC-ceEeeHHHHHHHHHHc------CCE
Confidence            99877554    46888999998864 6666        678999999999977 9999999999999999      988


Q ss_pred             EEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-----cCeeEEEEeCCCCCccccccc-----cCCCCCC
Q 018437          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-----AGVGWVVWRTKDDLPDELVFH-----INYLGSD  310 (356)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-----~g~g~l~~~~~~~~~~~~~~~-----~~~~~~~  310 (356)
                      +++ ++--....   .-..+-+   .|+|.+ ++.||.++.|     +++|++.+|++  +.+.++..     ..--+..
T Consensus       229 ~~~-~ad~~aL~---~l~~Pge---~GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~--l~r~lPGRiVG~t~D~~G~~  298 (429)
T PF02347_consen  229 VIV-GADPNALG---GLKSPGE---YGADIV-VGEHQTFGIPMGFGGPGAGFFAVRED--LVRQLPGRIVGQTKDADGKR  298 (429)
T ss_dssp             EEE-CGGCCGCC---TC--GGG---GT-SEE-EECCTTTT---CCC-S--EEEEE-GG--GGGGS-S-EEEEEEBCCCSC
T ss_pred             EEE-ecCHHHHh---CcCChhh---cCccEE-eeCCCCCcccCCCCCCCeeeEEEhhh--hhhhCCCceecccccccccc
Confidence            887 55321111   0111233   389999 6668875554     68899999865  22332211     0000100


Q ss_pred             ----------C-----CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          311 ----------Q-----PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       311 ----------~-----~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                                +     .--+--||-++..++..+.++..+|.+|++++.+++..+|+||+
T Consensus       299 ~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~  358 (429)
T PF02347_consen  299 AFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLA  358 (429)
T ss_dssp             CEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence                      0     00012378888888899999999999999999999999999985

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.84  E-value=9e-20  Score=178.73  Aligned_cols=193  Identities=15%  Similarity=0.167  Sum_probs=144.8

Q ss_pred             HHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCC
Q 018437           71 ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK  150 (356)
Q Consensus        71 ~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~  150 (356)
                      .+.+++.+++..+...|..+++..+++++    +++++|.+.       +++|+||++|+..++.++.++          
T Consensus        58 a~~~a~~~a~~~g~~~Y~~~~g~~~Lrea----ia~~~~~~~-------vv~t~ggt~A~~~~~~all~p----------  116 (460)
T PRK13238         58 AMSDRQWAAMMRGDEAYAGSRSYYRLEDA----VKDIFGYPY-------TIPTHQGRAAEQILFPVLIKK----------  116 (460)
T ss_pred             hhhHHHHHHHHhCCcccCCCCCHHHHHHH----HHHHhCCCc-------EEECCCHHHHHHHHHHHhCCC----------
Confidence            46666666665444567777888888776    666777653       799999999999998887543          


Q ss_pred             CCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-------Ccc--ccCHHHHHHHHhh----CceEEEEecCCCccc-
Q 018437          151 PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-------GYY--VMNPVKAVELVDE----NTICVAAILGSTLTG-  216 (356)
Q Consensus       151 ~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-------~~~--~~d~~~L~~~i~~----~~~~v~~~~~~~~tG-  216 (356)
                         ++ |+++.+.+.++...+.+.|++++.+++++       +.+  .+|+++|++++++    ++++|++++|+|++| 
T Consensus       117 ---GD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG  192 (460)
T PRK13238        117 ---GD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGG  192 (460)
T ss_pred             ---CC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCC
Confidence               46 88898878888888899999999999963       124  4999999999984    689999999999998 


Q ss_pred             cc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCC----CCccccc------CCCceEEEEcCCcCCCCCc
Q 018437          217 EF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP----DLEWDFR------LPLVKSINVSGHKYGLVYA  283 (356)
Q Consensus       217 ~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~----~~~~~~~------~~~~Ds~~~~~hK~l~~P~  283 (356)
                      .+   +++++|.++|++|      |+++++|+|+....+-|...    ....++.      ...+|++++++||.+++|.
T Consensus       193 ~v~s~~~l~~I~~ia~~~------gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~  266 (460)
T PRK13238        193 QPVSMANLRAVYEIAKKY------GIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNI  266 (460)
T ss_pred             cCCCHHHHHHHHHHHHHc------CCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcc
Confidence            44   4578999999999      99999999773210100100    0011110      1358999999999999999


Q ss_pred             CeeEEEEeCCCC
Q 018437          284 GVGWVVWRTKDD  295 (356)
Q Consensus       284 g~g~l~~~~~~~  295 (356)
                      | |+++.++.+.
T Consensus       267 G-G~i~~~d~~l  277 (460)
T PRK13238        267 G-GLLCFRDEDL  277 (460)
T ss_pred             e-eEEEcChHHH
Confidence            7 8888876433

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.84  E-value=1.9e-19  Score=172.04  Aligned_cols=191  Identities=16%  Similarity=0.090  Sum_probs=143.2

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH---
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ---  143 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~---  143 (356)
                      .+++++.+++.++.+. .      .....+.+++.+++++++|.+.       .++|+|+|+|+++++.++..+-.+   
T Consensus        24 ~~~~~v~~a~~~~~~~-~------~~~~~~~~~~~~~~a~~~g~~~-------~~~~~g~t~al~~al~al~~~Gd~~~~   89 (363)
T TIGR01437        24 TVSDEVADAQKRGAQN-Y------FEIKELVNKTGEYIANLLGVED-------AVIVSSASAGIAQSVAAVITRGNRYLV   89 (363)
T ss_pred             CCCHHHHHHHHHHHhc-C------CCHHHHHHHHHHHHHHhhCCCe-------EEEEcCHHHHHHHHHHHHhcCCCcchh
Confidence            4668899999888642 1      2355778889999999999864       789999999999999988543000   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchH----HHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEE-EecCCCccccc
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCW----EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVA-AILGSTLTGEF  218 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~----~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~-~~~~~~~tG~~  218 (356)
                      .+ .......+++|+++.+.++.+    ...+.+.|+++++++++   +.+|+++++++|+++|++++ +++++|++|.+
T Consensus        90 ~~-~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~---~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~  165 (363)
T TIGR01437        90 EN-LHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA---NECSAEQLEAAITEKTAAILYIKSHHCVQKSM  165 (363)
T ss_pred             hc-ccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC---CCCCHHHHHHhcChhceEEEEEecCCCCcCCc
Confidence            00 000011234888887544433    56777889999988863   57999999999999998766 57788999999


Q ss_pred             CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       219 ~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      .|+++|+++|+++      |+++|+|+||+..+        . .+...++|.+++|+||++.+|. .|+++.+
T Consensus       166 ~~~~~i~~~a~~~------gi~vivD~a~~~~~--------~-~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~  222 (363)
T TIGR01437       166 LSVEDAAQVAQEH------NLPLIVDAAAEEDL--------Q-KYYRLGADLVIYSGAKAIEGPT-SGLVLGK  222 (363)
T ss_pred             CCHHHHHHHHHHc------CCeEEEECCCCCch--------H-HHHHcCCCEEEEeCCcccCCCc-eEEEEEc
Confidence            9999999999999      99999999997211        0 1111268999999999999998 7887754

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.84  E-value=3.3e-19  Score=168.60  Aligned_cols=252  Identities=16%  Similarity=-0.005  Sum_probs=174.6

Q ss_pred             hHHHHHHHHH-HhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           69 EPECDKLVMA-SINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        69 ~~~v~~~i~~-~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+.+.+.+.+ ..+.+...+...++..++++.+.+++...+|.+..   ....++++|+++++..++.++..+       
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~---~~~~~~~~~~t~a~~~~~~~~~~~-------   82 (350)
T cd00609          13 PPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVP---PEEIVVTNGAQEALSLLLRALLNP-------   82 (350)
T ss_pred             CHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC---cceEEEecCcHHHHHHHHHHhCCC-------
Confidence            3445444443 33334444556678889999999999988775331   134789999999998888877432       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCH--HHHHHHHhhCceEEEEecCCCcccccCCHHHHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNP--VKAVELVDENTICVAAILGSTLTGEFEDVKLLH  225 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~--~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~  225 (356)
                            +++|+++.+.|.++..+++..|+.++.++.+++ +..+.  +.+++.+++++++|++++++|++|.+.|++++.
T Consensus        83 ------g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~  155 (350)
T cd00609          83 ------GDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEE-GGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELE  155 (350)
T ss_pred             ------CCEEEEcCCCchhHHHHHHHCCCEEEEEecccc-cCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHH
Confidence                  578999999999999999999999999999764 55554  677777778899999999999999998866555


Q ss_pred             ---HHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEEeCCCCCccccc
Q 018437          226 ---DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELV  301 (356)
Q Consensus       226 ---~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~~~~~~~~~~  301 (356)
                         ++|+++      |+++|+|++|+++................+.|.+..+.||+++ .+.++|+++.+++... +.+.
T Consensus       156 ~l~~~~~~~------~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~-~~~~  228 (350)
T cd00609         156 ELAELAKKH------GILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELL-ERLK  228 (350)
T ss_pred             HHHHHHHhC------CeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHH-HHHH
Confidence               899999      9999999999876542111000012224467888999999987 5667899987653332 2221


Q ss_pred             cccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       302 ~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ....+.         .++.+.....++...++... +++++..++..+++++|
T Consensus       229 ~~~~~~---------~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l  271 (350)
T cd00609         229 KLLPYT---------TSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDAL  271 (350)
T ss_pred             HHHHhc---------ccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHH
Confidence            111111         12334444555666666543 66777777777666665

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.83  E-value=5.9e-20  Score=176.60  Aligned_cols=248  Identities=10%  Similarity=0.010  Sum_probs=172.2

Q ss_pred             cCCCChHH-HHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeC-ChhHHHHHHHHHHHHHH
Q 018437           64 VTTWMEPE-CDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTV-GSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        64 ~~~~~~~~-v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~-Ggt~a~~~al~~~~~~~  141 (356)
                      .|+.+++. +.+++...+-.+   ...++.+.++.+++++.+++++|.+.+    ..+++++ +||+++..++..+..+ 
T Consensus        19 Gp~~~~~~~v~~a~~~~~~~~---~hr~~~f~~~~~~~r~~l~~l~~~~~~----~~v~~~~gs~T~~~~~~~~~l~~~-   90 (378)
T PRK03080         19 GPCKKRPGWQLEALADALLGR---SHRQKPVKALLKRVIEGTRELLSLPEG----YEVGIVPGSDTGAWEMALWSLLGA-   90 (378)
T ss_pred             CCcCCChHHHHHHHHhhhccc---CcCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEECCchHHHHHHHHHhcCCC-
Confidence            34455566 888887543311   122346778889999999999999642    2367675 8999999888776321 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcch-HHH-HHHhhCC-eeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccccc
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVC-WEK-FARYFEV-ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF  218 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s-~~~-~~~~~G~-~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~  218 (356)
                                 ++..|+. ...|.+ +.. +++..|+ +++.++.+.+ ..+|+++++.     ++.|.+++.+|.||.+
T Consensus        91 -----------~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g-~~~d~~~i~~-----~~~V~~~h~~t~tG~~  152 (378)
T PRK03080         91 -----------RRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEADYG-SLPDLSAVDF-----DRDVVFTWNGTTTGVR  152 (378)
T ss_pred             -----------CcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccCCC-CCCCHhhcCC-----CCCEEEEecCCcccee
Confidence                       1234554 456665 333 3466799 9999998764 6888877432     5678999999999999


Q ss_pred             CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcc
Q 018437          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (356)
Q Consensus       219 ~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~  298 (356)
                      .|+++|++  +++      |++++||++++.+..|       ++++  .+|.+.+++|||+++|+|+|+++++++. +..
T Consensus       153 ~pi~~I~~--~~~------g~~~vVDa~qs~G~~p-------idv~--~iD~~~~s~~K~l~~P~G~g~l~v~~~~-~~~  214 (378)
T PRK03080        153 VPVARWIG--ADR------EGLTICDATSAAFALP-------LDWS--KLDVYTFSWQKVLGGEGGHGMAILSPRA-VER  214 (378)
T ss_pred             ccchhhcc--ccC------CCeEEEecccccccCC-------CCHH--HCcEEEEehhhhCCCCCceEEEEECHHH-HHh
Confidence            99999998  778      9999999999987663       4544  3799999999999999999999998642 211


Q ss_pred             ccccccC-----CC---C-CC----CCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          299 ELVFHIN-----YL---G-SD----QPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       299 ~~~~~~~-----~~---~-~~----~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                      .......     |+   . +.    ..+....+|.+.....++..+|+.+-.+ |++++.+++.+++++|.
T Consensus       215 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~  285 (378)
T PRK03080        215 LESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLY  285 (378)
T ss_pred             hhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            1000011     11   0 00    0011122456666667778899999887 89999999988887763

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.83  E-value=4.5e-19  Score=171.88  Aligned_cols=220  Identities=12%  Similarity=0.025  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhccc-----CC--CcccCcchHHHHHHHHHHHHHHhCCC
Q 018437           39 KEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKN-----YV--DMDEYPVTTELQNRCVNMIAHLFNTP  111 (356)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~-----~~--~~~~~~~~~~le~~~~~~la~l~g~~  111 (356)
                      ..++++.+.+....+ +..++|.. .+++.++.+.+++.+.+...     ++  .+...+....+++.+++++++++|.+
T Consensus         4 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~   81 (402)
T cd00378           4 DPEIAEIIKKENERQ-RETLELIA-SENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE   81 (402)
T ss_pred             CHHHHHHHHHHHHHH-HhCeeeec-cCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC
Confidence            345666665543333 23444422 23455688888887655321     11  12223456678877889999999997


Q ss_pred             CCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH-----HHhhCCeeEEEEecCC
Q 018437          112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF-----ARYFEVELKEVKLEEG  186 (356)
Q Consensus       112 ~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~-----~~~~G~~v~~v~~~~~  186 (356)
                      .     . .++.+||++|+..++.++.++             +++|+++.++|.++...     ++..|++++.++++.+
T Consensus        82 ~-----~-~v~~~sgt~a~~~~l~~l~~~-------------Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  142 (402)
T cd00378          82 Y-----A-NVQPHSGSQANLAVYFALLEP-------------GDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVD  142 (402)
T ss_pred             c-----e-eeecCCcHHHHHHHHHHhcCC-------------CCEEEEecCccCccccccccccccccceeEEEecCCcC
Confidence            4     2 244446789999888887542             57899999998765332     5567888877877543


Q ss_pred             --ccccCHHHHHHHHh-hCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc
Q 018437          187 --YYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF  263 (356)
Q Consensus       187 --~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~  263 (356)
                        ++.+|++++++++. +++++|+++++++  |...|+++|.++|+++      |+++++|++|..+..  ........+
T Consensus       143 ~~~~~id~~~l~~~i~~~~~~~v~~~~~~~--~~~~~~~~I~~l~~~~------~~~li~D~a~~~g~~--~~g~~~~~~  212 (402)
T cd00378         143 PETGLIDYDALEKMALEFKPKLIVAGASAY--PRPIDFKRFREIADEV------GAYLLVDMAHVAGLV--AGGVFPNPL  212 (402)
T ss_pred             cccCCcCHHHHHHHHHhCCCCEEEecCccc--CCCcCHHHHHHHHHhc------CCEEEEEccchhhhh--hcccCCCcc
Confidence              58999999999995 5788888877765  5677999999999999      999999999743322  111111222


Q ss_pred             cCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          264 RLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       264 ~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      .  ++|.++.++||++.+|.| |++++.+
T Consensus       213 ~--~~dv~~~s~sK~l~G~~g-g~i~~~~  238 (402)
T cd00378         213 P--GADVVTTTTHKTLRGPRG-GLILTRK  238 (402)
T ss_pred             c--CCcEEEeccccCCCCCCc-eEEEecc
Confidence            2  679889999999877766 5555554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.82  E-value=4.4e-19  Score=171.40  Aligned_cols=210  Identities=16%  Similarity=0.149  Sum_probs=159.5

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|..+.+.. +++.+.+++.+.+......|...++...+++++.+++.+.+|.+.+.   ..+++|+|+++++.+++.+
T Consensus        36 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~~~al~~~~~~  112 (391)
T PRK08361         36 ISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDV---DNVIVTAGAYEATYLAFES  112 (391)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCc---ccEEEeCChHHHHHHHHHH
Confidence            3444444443 34677888877765544455556788999999999998887765321   3589999999999998887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      +..+             ++.|++++++|..+...++..|++++.+|++++ ++.+|+++|++++++++++|++++|+|||
T Consensus       113 l~~~-------------g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPt  179 (391)
T PRK08361        113 LLEE-------------GDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPT  179 (391)
T ss_pred             hcCC-------------CCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCC
Confidence            7542             578999999999999999999999999999753 47899999999999889999999999999


Q ss_pred             cccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-ccccCCCceEEEEcCCcCCCCC-cCeeEEEE
Q 018437          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRLPLVKSINVSGHKYGLVY-AGVGWVVW  290 (356)
Q Consensus       216 G~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~  290 (356)
                      |.+.|   +++|.++|+++      ++++++|++|+.+..+- ..... ..+ ....+.++.+++|.++.| ..+|+++.
T Consensus       180 G~~~~~~~~~~l~~~~~~~------~~~ii~De~y~~~~~~~-~~~~~~~~~-~~~~~i~~~s~SK~~~~~GlRiG~~~~  251 (391)
T PRK08361        180 GATLDKEVAKAIADIAEDY------NIYILSDEPYEHFLYEG-AKHYPMIKY-APDNTILANSFSKTFAMTGWRLGFVIA  251 (391)
T ss_pred             CcCcCHHHHHHHHHHHHHc------CeEEEEEcccccceeCC-CCCCCHhhc-CCCCEEEEecCchhcCCcHhhhhhhcc
Confidence            99988   88899999999      99999999998764310 01011 111 123467778999987433 23899987


Q ss_pred             e
Q 018437          291 R  291 (356)
Q Consensus       291 ~  291 (356)
                      .
T Consensus       252 ~  252 (391)
T PRK08361        252 P  252 (391)
T ss_pred             C
Confidence            4

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.82  E-value=1.5e-18  Score=169.44  Aligned_cols=215  Identities=15%  Similarity=0.095  Sum_probs=161.7

Q ss_pred             CCCCcccccccCC-----CChHHHHHHHHHHhcccC-CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChh
Q 018437           54 GNPRLNLASFVTT-----WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS  127 (356)
Q Consensus        54 ~~~~~~l~~~~~~-----~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt  127 (356)
                      +.+.++|+.+.|+     .+++.+.+++.+++..+. ..|....+..++++.+.+++.+.+|.+.+.   ..+++|+|++
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~---~~v~it~G~~  127 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELST---DDIYLTAGCA  127 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCCh---hhEEEeCCHH
Confidence            4556677776664     234678888888776432 245555688889999888888777765422   4589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEE
Q 018437          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICV  206 (356)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v  206 (356)
                      +|+.+++.++.++             +++|+++.|+|+.+...+...|++++.+++.+ ++|.+|+++|+++++++++++
T Consensus       128 ~al~l~~~~l~~~-------------Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i  194 (430)
T PLN00145        128 QAIEIIMSVLAQP-------------GANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAM  194 (430)
T ss_pred             HHHHHHHHHhcCC-------------CCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEE
Confidence            9999998887542             57999999999999999999999999999743 358999999999999999999


Q ss_pred             EEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-cccCCCceEEE-EcCCcC-CC
Q 018437          207 AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSIN-VSGHKY-GL  280 (356)
Q Consensus       207 ~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Ds~~-~~~hK~-l~  280 (356)
                      ++++|+||||.+.+   +++|.++|+++      ++++++|++|+.+...- .+..+. .+. .....++ -|..|. +.
T Consensus       195 ~i~~P~NPtG~v~~~~~l~~i~~~a~~~------~i~ii~De~Y~~~~~~~-~~~~~~~~~~-~~~~vi~~~S~SK~~~~  266 (430)
T PLN00145        195 VIINPNNPCGSVYSYEHLAKIAETARKL------GILVIADEVYDHLTFGS-KPFVPMGVFG-EVAPVLTLGSISKRWVV  266 (430)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEeccchhhccCC-CCccchhhhc-ccCcEEEEeccccccCC
Confidence            99999999999977   78888999999      99999999998754310 010111 111 1112333 347786 66


Q ss_pred             CCcCeeEEEEeC
Q 018437          281 VYAGVGWVVWRT  292 (356)
Q Consensus       281 ~P~g~g~l~~~~  292 (356)
                      ..+.+|+++..+
T Consensus       267 pG~RlG~iv~~~  278 (430)
T PLN00145        267 PGWRLGWIATCD  278 (430)
T ss_pred             CCeeEEEEEEec
Confidence            778999998754

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.82  E-value=5.7e-19  Score=172.01  Aligned_cols=273  Identities=12%  Similarity=-0.001  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhccc-C-CCcc-----cCcchHHHHHHHHHHHHHHhCCCC
Q 018437           40 EAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKN-Y-VDMD-----EYPVTTELQNRCVNMIAHLFNTPV  112 (356)
Q Consensus        40 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~-~-~~~~-----~~~~~~~le~~~~~~la~l~g~~~  112 (356)
                      .++.+.+++...... ...+|... .+++++.+.+++...+... . +.+.     ..+....+|+.+++++++++|.+.
T Consensus        11 ~~~~~~~~~~~~~~~-~~~~l~~~-~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~   88 (416)
T PRK00011         11 PEIADAIEQELKRQE-EHIELIAS-ENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEY   88 (416)
T ss_pred             HHHHHHHHHHHHHHh-cCeeeecc-cCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc
Confidence            456666655333321 22333332 2245678888886654321 1 1111     122455677668889999999975


Q ss_pred             CCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH---H--HHhhCCeeEEEEecCCc
Q 018437          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK---F--ARYFEVELKEVKLEEGY  187 (356)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~---~--~~~~G~~v~~v~~~~~~  187 (356)
                           .. ++.++||+|+..++.++..+             +++|+++.++|.++..   .  ....|++++.++++.++
T Consensus        89 -----~~-i~~~sgt~al~~~l~~l~~~-------------gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  149 (416)
T PRK00011         89 -----AN-VQPHSGSQANAAVYFALLKP-------------GDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEET  149 (416)
T ss_pred             -----ee-eecCCchHHHHHHHHHhcCC-------------CCEEEEeccccCCccccccccccccceeeEeecCcCccc
Confidence                 22 34345688988888776432             5789999999876432   1  12346778888887545


Q ss_pred             cccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCC
Q 018437          188 YVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP  266 (356)
Q Consensus       188 ~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  266 (356)
                      +.+|+++|++++++ ++++|+++.+  .+|...|+++|.++|+++      |+++++|+||..+...  ....+..+.  
T Consensus       150 ~~~d~~~l~~~i~~~~~k~v~~~~~--~~~~~~~~~~I~~la~~~------~~~livD~a~~~g~~~--~g~~~~~~~--  217 (416)
T PRK00011        150 GLIDYDEVEKLALEHKPKLIIAGAS--AYSRPIDFKRFREIADEV------GAYLMVDMAHIAGLVA--AGVHPSPVP--  217 (416)
T ss_pred             CCcCHHHHHHHHHhcCCCEEEECCC--cCCCccCHHHHHHHHHHc------CCEEEEECcchhcccc--cCccCCCCC--
Confidence            89999999999975 7888877643  346778999999999999      9999999998644331  111122222  


Q ss_pred             CceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHH
Q 018437          267 LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFIS  346 (356)
Q Consensus       267 ~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~  346 (356)
                      ++|.++.++||++.+|.| |++++.+++.. +.+.. ..+.+       ..++......+++..++.....++++++.++
T Consensus       218 ~~di~~~S~~K~l~g~~g-g~i~~~~~~~~-~~l~~-~~~~~-------~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~  287 (416)
T PRK00011        218 HADVVTTTTHKTLRGPRG-GLILTNDEELA-KKINS-AVFPG-------IQGGPLMHVIAAKAVAFKEALEPEFKEYAQQ  287 (416)
T ss_pred             CCcEEEecCCcCCCCCCc-eEEEeCCHHHH-HHHHH-HhCcc-------ccCCccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            689999999999877776 56666543332 22111 11111       1123333345555556655556677777777


Q ss_pred             HHhccCccc
Q 018437          347 SLKVCPFLV  355 (356)
Q Consensus       347 ~~~~a~~l~  355 (356)
                      ..++++++.
T Consensus       288 ~~~~~~~l~  296 (416)
T PRK00011        288 VVKNAKALA  296 (416)
T ss_pred             HHHHHHHHH
Confidence            777776653

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.82  E-value=7.7e-20  Score=172.92  Aligned_cols=188  Identities=18%  Similarity=0.070  Sum_probs=134.8

Q ss_pred             cccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           62 SFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        62 ~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      +..+..+++.+.+++.++.... ..+...+    ..+++++++++++| +.      .+++++|||+++..++.++..+ 
T Consensus         4 ~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~----~~~~l~~~~a~~~g-~~------~~~~~~~gt~a~~~~~~~l~~~-   70 (338)
T cd06502           4 SDTVTGPTPEMLEAMAAANVGD-DVYGEDP----TTAKLEARAAELFG-KE------AALFVPSGTAANQLALAAHTQP-   70 (338)
T ss_pred             cccCCCCCHHHHHHHHhcccCC-cccCCCH----HHHHHHHHHHHHhC-CC------eEEEecCchHHHHHHHHHhcCC-
Confidence            3445566788888887754322 1222222    34566677999999 32      3789999999999888876532 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHH---HHHhhCCeeEEEEecCCccccCHHHHHHHHhh-------CceEEEEecC
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVCWEK---FARYFEVELKEVKLEEGYYVMNPVKAVELVDE-------NTICVAAILG  211 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s~~~---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-------~~~~v~~~~~  211 (356)
                                  +++|+++.++|.++..   .+...|++++.++.+.  +.+|+++|++++++       ++++|++++|
T Consensus        71 ------------gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p  136 (338)
T cd06502          71 ------------GGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN--GKLTPEDLEAAIRPRDDIHFPPPSLVSLENT  136 (338)
T ss_pred             ------------CCeEEEecCcceeeecCCcHHHHcCceEEeecCCC--CcCCHHHHHHHhhccCCCcCCcceEEEEEee
Confidence                        5789999999987553   3456799999999753  78999999999975       6889999999


Q ss_pred             CCcccc--cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC
Q 018437          212 STLTGE--FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG  284 (356)
Q Consensus       212 ~~~tG~--~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g  284 (356)
                      +|+.|.  .+++++|.++|+++      ++++|+|+||..+..... .. .......++|.++.++|||++.|.|
T Consensus       137 ~n~g~~~~~~~l~~i~~~~~~~------~~~livDea~~~~~~~~~-~~-~~~~~~~~~d~~~~s~sK~~~~~~g  203 (338)
T cd06502         137 TEGGTVYPLDELKAISALAKEN------GLPLHLDGARLANAAAAL-GV-ALKTYKSGVDSVSFCLSKGGGAPVG  203 (338)
T ss_pred             cCCccccCHHHHHHHHHHHHHc------CCeEeechHHHHHHHHhc-CC-CHHHHHhcCCEEEEeccccCCCccc
Confidence            997442  36788899999999      999999999854322100 11 1111124689999999999987754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PLN02656 tyrosine transaminase

Probab=99.82  E-value=1.3e-18  Score=169.21  Aligned_cols=217  Identities=16%  Similarity=0.097  Sum_probs=164.2

Q ss_pred             cCCCCcccccccCC-----CChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCh
Q 018437           53 DGNPRLNLASFVTT-----WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS  126 (356)
Q Consensus        53 ~~~~~~~l~~~~~~-----~~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Gg  126 (356)
                      .+...++|..+.|.     ++++.+.+++.+++..+ ...|....+..++++++.+++.+.+|.+.+.   ..+++|+|+
T Consensus        29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~  105 (409)
T PLN02656         29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSL---DDVFITSGC  105 (409)
T ss_pred             cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCc---ccEEEeCCh
Confidence            44555677777775     34578888888877654 3456666788899999999998877765422   358899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceE
Q 018437          127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTIC  205 (356)
Q Consensus       127 t~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~  205 (356)
                      ++++.+++.++.++             +++|++++++|..+...++..|++++.+|+++ +++.+|+++|++++++++++
T Consensus       106 ~~al~~~~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~  172 (409)
T PLN02656        106 TQAIDVALSMLARP-------------GANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVA  172 (409)
T ss_pred             HHHHHHHHHHHhCC-------------CCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceE
Confidence            99999998877543             57899999999999999999999999999953 34789999999999888999


Q ss_pred             EEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-cccCCCceEEEEcCCcC-CC
Q 018437          206 VAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKY-GL  280 (356)
Q Consensus       206 v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Ds~~~~~hK~-l~  280 (356)
                      |++++|+||||.+   +++++|.++|+++      ++++++|++|+.+...- ....+. .+....--.+.-|+.|. +.
T Consensus       173 v~l~~P~NPtG~~~s~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~f~~  245 (409)
T PLN02656        173 LVIINPGNPCGNVYSYQHLKKIAETAEKL------KILVIADEVYGHLAFGS-NPFVPMGVFGSIVPVLTLGSLSKRWIV  245 (409)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEehhhhhcccCC-CCcccHHHhcccCcEEEEcccchhccC
Confidence            9999999999998   5788999999999      99999999998754310 000111 11100011234458897 66


Q ss_pred             CCcCeeEEEEeC
Q 018437          281 VYAGVGWVVWRT  292 (356)
Q Consensus       281 ~P~g~g~l~~~~  292 (356)
                      ....+|+++..+
T Consensus       246 pGlRiG~~i~~~  257 (409)
T PLN02656        246 PGWRLGWFVTTD  257 (409)
T ss_pred             cceeEEEEEEeC
Confidence            678999999853

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.82  E-value=5.6e-19  Score=169.88  Aligned_cols=185  Identities=12%  Similarity=0.084  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HHHHHHHHHhc
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ  148 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~  148 (356)
                      +...+++.+.+..+...  ..+...++|++    +++++|.+.       .++++|||+|+.+++.++ ..+        
T Consensus        14 ~~e~~~~~~~l~~~~~~--~g~~~~~le~~----la~~~g~~~-------~v~~~sgt~al~lal~al~~~~--------   72 (379)
T PRK11658         14 DEELAAVKEVLRSGWIT--TGPKNQALEQA----FCQLTGNQH-------AIAVSSATAGMHITLMALGIGP--------   72 (379)
T ss_pred             HHHHHHHHHHHHcCCcc--CCHhHHHHHHH----HHHHhCCCe-------EEEECCHHHHHHHHHHHcCCCC--------
Confidence            34456666666544332  24555566655    888888864       688899999999998876 221        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHH
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL  228 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~  228 (356)
                           +++|+++.++|.++..++...|++++.++++.+++.+|+++|++++++++++|+   +++++|...|+++|.++|
T Consensus        73 -----Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a  144 (379)
T PRK11658         73 -----GDEVITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIG  144 (379)
T ss_pred             -----CCEEEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHH
Confidence                 579999999999999999999999999999876678999999999998998887   556689999999999999


Q ss_pred             HHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCC
Q 018437          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~  295 (356)
                      +++      |+++++|+|++.+...  .+.   .....+++.++++.+|.+.++.| |+++..+++.
T Consensus       145 ~~~------gi~vi~D~a~a~g~~~--~~~---~~g~~g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~  199 (379)
T PRK11658        145 ERY------GIPVIEDAAHAVGTYY--KGR---HIGARGTAIFSFHAIKNITCAEG-GLVVTDDDEL  199 (379)
T ss_pred             HHc------CCeEEEECCCccCCeE--CCe---ecCCCCCEEEeCCCCCcCcccCc-eEEEECCHHH
Confidence            999      9999999999754331  111   12223568889999999866543 5665554443

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.82  E-value=7.2e-19  Score=169.24  Aligned_cols=212  Identities=13%  Similarity=-0.001  Sum_probs=159.6

Q ss_pred             cccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|+.+.+..+ ++.+.+++.+.+......|....+...+++++.+++.+.+|...+.   ..+++|+|+++++..++.+
T Consensus        27 i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~---~~i~~t~g~~~al~~~~~~  103 (382)
T PRK06108         27 LPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPP---ERIAVTSSGVQALMLAAQA  103 (382)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCc---ceEEEeCChHHHHHHHHHH
Confidence            45555555443 5688888887765543446666788899999999999998944321   3488999999999888887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC--CccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~--~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      +.++             ++.|+++.++|..+...++..|++++.+|++.  +++.+|+++|++.+++++++|++++|+||
T Consensus       104 l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NP  170 (382)
T PRK06108        104 LVGP-------------GDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNP  170 (382)
T ss_pred             hcCC-------------CCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCC
Confidence            6542             57899999999999999999999999999963  24789999999999888999999999999


Q ss_pred             ccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc--ccccC-CCceEEEEcCCcCCC-CCcCeeE
Q 018437          215 TGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFRL-PLVKSINVSGHKYGL-VYAGVGW  287 (356)
Q Consensus       215 tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~-~~~Ds~~~~~hK~l~-~P~g~g~  287 (356)
                      ||.+-   ++++|.++|+++      ++++++|++|+.+.... .....  .++.. ..-..+..+.+|.++ .+..+|+
T Consensus       171 tG~~~~~~~~~~l~~~~~~~------~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~  243 (382)
T PRK06108        171 TGWTASRDDLRAILAHCRRH------GLWIVADEVYERLYYAP-GGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGW  243 (382)
T ss_pred             CCcccCHHHHHHHHHHHHHC------CcEEEEehhhhhhccCC-CCCCCCHhhcCCCcCCEEEEeechhhccCcccceee
Confidence            99875   568899999999      99999999998865420 00100  11111 123456678999753 4567899


Q ss_pred             EEEeC
Q 018437          288 VVWRT  292 (356)
Q Consensus       288 l~~~~  292 (356)
                      ++..+
T Consensus       244 ~~~~~  248 (382)
T PRK06108        244 LVAPP  248 (382)
T ss_pred             eeCCH
Confidence            98743

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.82  E-value=8.1e-20  Score=174.24  Aligned_cols=254  Identities=15%  Similarity=0.011  Sum_probs=172.9

Q ss_pred             cCCCChHHHHHHHHHHhc----ccCCCcccC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCC-hhHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASIN----KNYVDMDEY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVG-SSEAIMLAGL  135 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~----~~~~~~~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~G-gt~a~~~al~  135 (356)
                      .|...++.|.+++..++.    .+.+.+..+   +.+.++.+++++.+++++|.+.+    ..+++|+| +|+++..++.
T Consensus         6 Gp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~----~~vvf~~gs~T~a~~~~~~   81 (355)
T cd00611           6 GPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDN----YKVLFLQGGATGQFAAVPL   81 (355)
T ss_pred             CCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCCchHHHHHHHH
Confidence            344566889999988773    222233333   45668888999999999998532    34889888 9999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCcccc-C-HHHHHHHHhhCceEEEEecCCC
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVM-N-PVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~-d-~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      .+..+        +  ..+++|++....|.+ .+.++..|++++.++++++ +.. + ++..+..+++++++|.+++.+|
T Consensus        82 ~l~~~--------~--~~~~~i~~g~~~~~~-~~~a~~~g~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~lV~~~h~~t  149 (355)
T cd00611          82 NLLGD--------K--GTADYVVTGAWSAKA-AKEAKRYGGVVVIVAAKEE-GKYTKIPDVETWDLAPDAAYVHYCSNET  149 (355)
T ss_pred             hcCCC--------C--CeEEEEECCHHHHHH-HHHHHhcCCCcEEEecccc-cCCCCCCCHhhcCCCCCCCEEEEeCCcc
Confidence            77321        0  012455554444433 4566778999999998643 222 4 3333344667899999999999


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      .||...  .   ++++.+      |++++||+++..+..|       ++++.  .|....++||++ +|+|+|+++++++
T Consensus       150 ~tG~~~--~---~i~~~~------g~~~~VDa~qs~g~~~-------idv~~--~~~~~ss~~K~l-GP~G~g~l~~~~~  208 (355)
T cd00611         150 IHGVEF--D---EVPDTG------GVPLVADMSSNILSRP-------IDVSK--FGVIYAGAQKNL-GPAGVTVVIVRKD  208 (355)
T ss_pred             cccEEc--c---eecccC------CCeEEEEccccccCCC-------CCHHH--hCEEEeeccccc-CCCceEEEEECHH
Confidence            999982  2   445558      9999999999887663       45442  233445699976 6999999999865


Q ss_pred             CCCccccccccCCCCCC--CCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          294 DDLPDELVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       294 ~~~~~~~~~~~~~~~~~--~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                      .+. +.-...+.+....  .......||++...++++.++++.+-.+ |++++.+++.+++++|.
T Consensus       209 ~~~-~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~  272 (355)
T cd00611         209 LLG-KARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLY  272 (355)
T ss_pred             HHh-hcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            221 1000111111110  0111125899999999999999999888 79999999999998874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PLN00175 aminotransferase family protein; Provisional

Probab=99.82  E-value=1.4e-18  Score=169.08  Aligned_cols=213  Identities=13%  Similarity=0.039  Sum_probs=162.6

Q ss_pred             CCcccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           56 PRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        56 ~~~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      +.++|+.+.|..+ ++.+.+++.+++......|....+..++++++.+++.+.+|.+.+.  ...+++|+|+++++..++
T Consensus        55 ~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~--~~~I~vt~G~~~al~~~~  132 (413)
T PLN00175         55 GAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDP--EKEVTVTSGCTEAIAATI  132 (413)
T ss_pred             CeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCCEEEeCCHHHHHHHHH
Confidence            4456666666644 4677888887776543456666688999999999999988876422  124889999999998888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      .++.++             +++|++++|.|..+...++..|++++.|+++++++.+|+++|++++.+++++|++++|+||
T Consensus       133 ~~l~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NP  199 (413)
T PLN00175        133 LGLINP-------------GDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNP  199 (413)
T ss_pred             HHhCCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCC
Confidence            876543             5799999999999999999999999999997545899999999999888999999999999


Q ss_pred             ccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-cccc-CCCceEEEEcCCcCCC-CCcCeeEE
Q 018437          215 TGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAGVGWV  288 (356)
Q Consensus       215 tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l  288 (356)
                      ||.+.   ++++|.++|+++      ++|+++|++|..+...  ..... ..+. ...-..+..|+.|.++ ....+|++
T Consensus       200 tG~~~s~~~l~~l~~~a~~~------~~~ii~De~Y~~l~~~--~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~  271 (413)
T PLN00175        200 TGKMFTREELELIASLCKEN------DVLAFTDEVYDKLAFE--GDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWA  271 (413)
T ss_pred             CCcCCCHHHHHHHHHHHHHc------CcEEEEecccCccccC--CcccChhhCCCCcCcEEEEecchhhccCcchheeee
Confidence            99985   577899999999      9999999999876431  11000 1111 1122344566889876 55789998


Q ss_pred             EEe
Q 018437          289 VWR  291 (356)
Q Consensus       289 ~~~  291 (356)
                      +..
T Consensus       272 v~~  274 (413)
T PLN00175        272 IAP  274 (413)
T ss_pred             EeC
Confidence            864

>PRK08960 hypothetical protein; Provisional

Probab=99.81  E-value=1.6e-18  Score=167.29  Aligned_cols=211  Identities=16%  Similarity=0.093  Sum_probs=158.6

Q ss_pred             CcccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           57 RLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        57 ~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      .++|..+.+++ +++.+.+++.+.+..+...|....+..++++.+.+++.+.+|.+.+.   ..+++|+|+++++..++.
T Consensus        34 ~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~it~G~~~al~~~~~  110 (387)
T PRK08960         34 VIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDP---ERILVTPGGSGALLLASS  110 (387)
T ss_pred             eEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCCh---hhEEEccCcHHHHHHHHH
Confidence            34566666663 46788888888776444455556788889999999988887765422   458999999999999888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      ++.++             +++|++++++|+.+...++..|.+++.+|++++ ++.+|++.|+++++++++++++++|+||
T Consensus       111 ~~~~~-------------gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NP  177 (387)
T PRK08960        111 LLVDP-------------GKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANP  177 (387)
T ss_pred             HhcCC-------------CCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCC
Confidence            77542             579999999999999999999999999999753 4789999999999988899999999999


Q ss_pred             ccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       215 tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      ||.+.+   +++|+++|+++      ++++++|++|..+...   +....-+....-..+..|.+|.++ ....+|+++.
T Consensus       178 tG~~~~~~~~~~l~~~~~~~------~~~li~De~Y~~~~~~---~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~  248 (387)
T PRK08960        178 TGTLLSRDELAALSQALRAR------GGHLVVDEIYHGLTYG---VDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVA  248 (387)
T ss_pred             CCcCcCHHHHHHHHHHHHHc------CCEEEEEccccccccC---CCCCChhhccCCEEEEeecccccCCcccEEEEEEc
Confidence            999866   55677788999      9999999999875431   111111112111234456999763 4456999987


Q ss_pred             eC
Q 018437          291 RT  292 (356)
Q Consensus       291 ~~  292 (356)
                      .+
T Consensus       249 ~~  250 (387)
T PRK08960        249 PP  250 (387)
T ss_pred             CH
Confidence            53

>PRK12414 putative aminotransferase; Provisional

Probab=99.81  E-value=3.1e-18  Score=165.12  Aligned_cols=212  Identities=14%  Similarity=0.037  Sum_probs=158.5

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|+.+.+.. +++.+.+++.+.+......|....+...+++++.+++++++|++.+.  ...+++|+|+++++..++.+
T Consensus        32 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--~~~i~it~g~~~al~~~~~~  109 (384)
T PRK12414         32 LNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDP--ASEVTVIASASEGLYAAISA  109 (384)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCcEEEECChHHHHHHHHHH
Confidence            4455554443 35677787776654333445555688899999999999999986311  12489999999999988887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      +.++             +++|+++.++|..+...++..|++++.+|++++++.+|++.|++++++++++|++++|+||||
T Consensus       110 l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG  176 (384)
T PRK12414        110 LVHP-------------GDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSA  176 (384)
T ss_pred             hcCC-------------CCEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCC
Confidence            7543             578999999999999999999999999999764588999999999988899999999999999


Q ss_pred             cc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-cccc-CCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          217 EF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       217 ~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      .+   +++++|.++|+++      ++++++|++|..+...- .+... ..+. ...-..+..|+.|.++ ....+|+++.
T Consensus       177 ~~~s~~~~~~i~~~a~~~------~~~ii~De~Y~~~~~~~-~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~  249 (384)
T PRK12414        177 TVFSAADLARLAQLTRNT------DIVILSDEVYEHVVFDG-ARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLA  249 (384)
T ss_pred             cCCCHHHHHHHHHHHHHC------CeEEEEhhhhhhccCCC-CCccCcccCcCccCcEEEEecccccccCccceEEEEec
Confidence            97   5688899999999      99999999998654310 00000 0111 1112355667899774 5567899986


Q ss_pred             e
Q 018437          291 R  291 (356)
Q Consensus       291 ~  291 (356)
                      .
T Consensus       250 ~  250 (384)
T PRK12414        250 P  250 (384)
T ss_pred             C
Confidence            4

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.81  E-value=5.6e-18  Score=164.65  Aligned_cols=233  Identities=13%  Similarity=0.095  Sum_probs=170.9

Q ss_pred             CHHHHHHHHHHHhhhcC-CCCcccccccCC-----CChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCC
Q 018437           38 PKEAAYQVINDELMLDG-NPRLNLASFVTT-----WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNT  110 (356)
Q Consensus        38 ~~~~i~~~~~~~~~~~~-~~~~~l~~~~~~-----~~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~  110 (356)
                      +..+..+.+.+.+..+. .+.++|+.+.+.     .+++.+.+++.++++.. ...|....+...+++++.+++.+.+|.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~   93 (409)
T PLN00143         14 SIDDAVKFLKENFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPY   93 (409)
T ss_pred             hHHHHHHHHHHhcccCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCC
Confidence            34555555555444333 344577777775     45568888888877643 234556668888999999998887776


Q ss_pred             CCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec-CCccc
Q 018437          111 PVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYV  189 (356)
Q Consensus       111 ~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~  189 (356)
                      +.+.   ..+++|+|+++++.+++.++.++             ++.|+++.|+|+.+...++..|++++.++++ ++++.
T Consensus        94 ~~~~---~~I~it~G~~~al~~~~~~l~~~-------------gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~  157 (409)
T PLN00143         94 QLSP---DDVYLTLGCKHAAEIIIKVLARP-------------EANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWE  157 (409)
T ss_pred             CCCH---hhEEEecChHHHHHHHHHHHcCC-------------CCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCc
Confidence            5422   45899999999999999887653             5799999999999999999999999999985 34588


Q ss_pred             cCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-cccC
Q 018437          190 MNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRL  265 (356)
Q Consensus       190 ~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~  265 (356)
                      +|+++|+++++++++++++++|+||||.+.+   +++|.++|+++      ++++++|++|..+...- .+..+. .+..
T Consensus       158 ~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~------~~~ii~De~Y~~l~~~~-~~~~~~~~~~~  230 (409)
T PLN00143        158 VDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKL------GILVIADEVYGHIVFGS-KPFVPMGLFAS  230 (409)
T ss_pred             CCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHc------CCeEEEEccccccccCC-CCCcchhhhcc
Confidence            9999999999888999999999999999966   67788899999      99999999998754310 000111 1110


Q ss_pred             CCceEEEEcCCcC-CCCCcCeeEEEEeCC
Q 018437          266 PLVKSINVSGHKY-GLVYAGVGWVVWRTK  293 (356)
Q Consensus       266 ~~~Ds~~~~~hK~-l~~P~g~g~l~~~~~  293 (356)
                      ..--.+..|+.|. +.....+|+++..++
T Consensus       231 ~~~vi~~~SfSK~f~~pGlRvG~~v~~~p  259 (409)
T PLN00143        231 IVPVITLGSISKRWMIPGWGLGWLVTCDP  259 (409)
T ss_pred             cCcEEEEccchhhcCCCccceEEEEeeCc
Confidence            0011344568897 667789999988543

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.81  E-value=1.7e-18  Score=167.29  Aligned_cols=188  Identities=13%  Similarity=-0.020  Sum_probs=139.3

Q ss_pred             hHHHHHHHHHHhcccCCCcccCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           69 EPECDKLVMASINKNYVDMDEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +|.+.+++.+++......+..+.   +...+..++++.+++++|.+.       .++++||++|+..++.++.++     
T Consensus        54 ~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~-------~ii~~~~~~a~~~~~~~l~~~-----  121 (393)
T TIGR01822        54 HPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTED-------TILYASCFDANGGLFETLLGA-----  121 (393)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc-------EEEECchHHHHHHHHHHhCCC-----
Confidence            57788887777765322222322   545566677788999999864       677789999999877766432     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCcccccC
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFE  219 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~  219 (356)
                              +++|+++.++|+++...++..+...+.++      .+|+++|++++.+      ++++|++.+.+|++|.+.
T Consensus       122 --------gd~vi~~~~~~~s~~~~~~~~~~~~~~~~------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~  187 (393)
T TIGR01822       122 --------EDAIISDALNHASIIDGVRLCKAKRYRYA------NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIA  187 (393)
T ss_pred             --------CCEEEEeccccHHHHHHHHhcCCceEEeC------CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcC
Confidence                    57999999999999998888777664332      4789999998875      678888888999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC---cccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL---EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       220 ~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~---~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      |+++|.++|++|      ++++++|++|+.+..+. ....   ..++ ..++|.++.++||++.++ ..|+++.+
T Consensus       188 ~l~~i~~la~~~------~~~li~De~~~~g~~~~-~~~~~~~~~~~-~~~~di~~~s~sK~l~g~-r~G~~~~~  253 (393)
T TIGR01822       188 PLDEICDLADKY------DALVMVDECHATGFLGP-TGRGSHELCGV-MGRVDIITGTLGKALGGA-SGGFTTAR  253 (393)
T ss_pred             CHHHHHHHHHHc------CCEEEEECCccccCcCC-CCCchHHhcCC-CCCCeEEEEEChHHhhCC-CcEEEEeC
Confidence            999999999999      99999999996544321 1000   0111 236899999999998654 56887754

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK08912 hypothetical protein; Provisional

Probab=99.81  E-value=2.9e-18  Score=165.52  Aligned_cols=213  Identities=14%  Similarity=0.016  Sum_probs=157.2

Q ss_pred             cccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|+.+.+..+ ++.+.+.+.+.+......|....+..++++.+.+++.+.+|.+.+.  ...+++|+|+++++..++.+
T Consensus        29 i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--~~~i~~t~G~~~al~~~~~~  106 (387)
T PRK08912         29 INLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDP--ETEVMVTSGATEALAAALLA  106 (387)
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--cccEEEeCCcHHHHHHHHHH
Confidence            45555544433 3556666655554333445555678899999999999888875422  11589999999999888877


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      ..++             +++|+++.++|..+...++..|++++.+|++++++.+|+++|++.+.+++++|++++|+||||
T Consensus       107 ~~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG  173 (387)
T PRK08912        107 LVEP-------------GDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAG  173 (387)
T ss_pred             hcCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcC
Confidence            6432             578999999999999999999999999999754589999999999988899999999999999


Q ss_pred             ccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-cccc-CCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          217 EFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       217 ~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      .+.+   +++|.++|+++      ++++++|++|+.+...- .+... ..+. ....+.+..+..|.++ ....+|+++.
T Consensus       174 ~~~s~~~~~~i~~~~~~~------~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~  246 (387)
T PRK08912        174 KVFPREELALLAEFCQRH------DAVAICDEVWEHVVFDG-RRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCA  246 (387)
T ss_pred             cccCHHHHHHHHHHHHHC------CeEEEEhhhhhhcccCC-CCCcChhhCCCccCceEEEeechhhccCcCceeEEEec
Confidence            9865   67799999999      99999999998654310 00001 1111 1234577788999875 3355899987


Q ss_pred             eC
Q 018437          291 RT  292 (356)
Q Consensus       291 ~~  292 (356)
                      ..
T Consensus       247 ~~  248 (387)
T PRK08912        247 AP  248 (387)
T ss_pred             CH
Confidence            43

>PRK08363 alanine aminotransferase; Validated

Probab=99.81  E-value=2.9e-18  Score=166.13  Aligned_cols=213  Identities=14%  Similarity=0.025  Sum_probs=159.8

Q ss_pred             cCCCCcccccccCC----CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhH
Q 018437           53 DGNPRLNLASFVTT----WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (356)
Q Consensus        53 ~~~~~~~l~~~~~~----~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (356)
                      .+.+.++|+.+.|.    ++++.+.+++.+.+......|...++..++++.+.+++.+.+|...+.   ..+++|+|+++
T Consensus        28 ~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~it~G~~~  104 (398)
T PRK08363         28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITP---DDVRVTAAVTE  104 (398)
T ss_pred             cCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCh---hhEEEeCCHHH
Confidence            44455677777763    345678888877765433345456678889999888888877754322   35899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEE-EecCCccccCHHHHHHHHhhCceEEE
Q 018437          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEV-KLEEGYYVMNPVKAVELVDENTICVA  207 (356)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v-~~~~~~~~~d~~~L~~~i~~~~~~v~  207 (356)
                      ++.+++.++.++             ++.|+++.++|..+...++..|+.++.+ +++++++.+|++.|++++.+++++|+
T Consensus       105 al~~~~~~~~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~  171 (398)
T PRK08363        105 ALQLIFGALLDP-------------GDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIA  171 (398)
T ss_pred             HHHHHHHHhCCC-------------CCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEE
Confidence            999998877542             5789999999999999999999998888 55555578999999999988899999


Q ss_pred             EecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCc-eEE-EEcCCcC-CC
Q 018437          208 AILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLV-KSI-NVSGHKY-GL  280 (356)
Q Consensus       208 ~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~-Ds~-~~~~hK~-l~  280 (356)
                      +++|+||||.+-+   +++|.++|+++      ++++++|++|+.+...   +.. ..+. .... ..+ ..|+.|+ +.
T Consensus       172 l~~p~NPtG~~~~~~~~~~l~~~a~~~------~~~li~Deay~~~~~~---~~~-~~~~~~~~~~~vi~~~SfSK~~~~  241 (398)
T PRK08363        172 VINPNNPTGALYEKKTLKEILDIAGEH------DLPVISDEIYDLMTYE---GKH-VSPGSLTKDVPVIVMNGLSKVYFA  241 (398)
T ss_pred             EECCCCCCCcCcCHHHHHHHHHHHHHc------CeEEEEhhhhhhhccC---Ccc-cCHHHcCcCCcEEEEecchhccCC
Confidence            9999999999866   88999999999      9999999999875331   111 1111 1111 233 4579998 56


Q ss_pred             CCcCeeEEEEe
Q 018437          281 VYAGVGWVVWR  291 (356)
Q Consensus       281 ~P~g~g~l~~~  291 (356)
                      ...++|++++.
T Consensus       242 ~GlRiG~~~~~  252 (398)
T PRK08363        242 TGWRLGYIYFV  252 (398)
T ss_pred             ccceEEEEEEe
Confidence            67889999873

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.81  E-value=3.8e-18  Score=170.53  Aligned_cols=213  Identities=11%  Similarity=0.033  Sum_probs=158.7

Q ss_pred             cCCCCcccccccCC---C-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhH
Q 018437           53 DGNPRLNLASFVTT---W-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (356)
Q Consensus        53 ~~~~~~~l~~~~~~---~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (356)
                      .++..++|..+.+.   + +++.+.+++.+.+.. ...|....+...+++++.+++.+..+.+.+   ...+++|+|+++
T Consensus       144 ~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~-~~~Y~~~~G~~~lReaia~~~~~~~~~~~~---~~~I~it~G~~e  219 (517)
T PRK13355        144 AGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTD-TEGYSDSKGLFSARKAIMQYAQLKGLPNVD---VDDIYTGNGVSE  219 (517)
T ss_pred             cCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCcChHHHHHHHHHHHHhcCCCCCC---hhHEEEeCcHHH
Confidence            44555566665663   2 246777777766653 334656668888998888888665443221   135899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEE
Q 018437          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVA  207 (356)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~  207 (356)
                      ++.+++.++.++             +++|+++.|+|+.|...++..|++++.++++++ +|.+|+++|++++++++++|+
T Consensus       220 al~~~~~~l~~~-------------Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~  286 (517)
T PRK13355        220 LINLSMSALLDD-------------GDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIV  286 (517)
T ss_pred             HHHHHHHHhCCC-------------CCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEE
Confidence            999998887543             579999999999999999999999999998753 589999999999998999999


Q ss_pred             EecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEE-cCCcC-CC
Q 018437          208 AILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINV-SGHKY-GL  280 (356)
Q Consensus       208 ~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~-~~hK~-l~  280 (356)
                      +++|+||||.+.+   +++|.++|++|      ++++++|++|..+..+   ......+.  .+....+++ ++.|. +.
T Consensus       287 i~nP~NPTG~v~~~~~l~~i~~~a~~~------~~~ii~DE~Y~~~~~~---~~~~~s~~~~~~~~~vi~~~S~SK~~~~  357 (517)
T PRK13355        287 IINPNNPTGALYPREVLQQIVDIAREH------QLIIFSDEIYDRLVMD---GLEHTSIASLAPDLFCVTFSGLSKSHMI  357 (517)
T ss_pred             EECCCCCCCcCcCHHHHHHHHHHHHHc------CcEEEEehhhhhhcCC---CCCcccHHHhCCCCeEEEEecchhhccC
Confidence            9999999999966   88899999999      9999999999875541   11111111  122234443 46897 46


Q ss_pred             CCcCeeEEEEe
Q 018437          281 VYAGVGWVVWR  291 (356)
Q Consensus       281 ~P~g~g~l~~~  291 (356)
                      +.+.+|++++.
T Consensus       358 ~G~RiG~~i~~  368 (517)
T PRK13355        358 AGYRIGWMILS  368 (517)
T ss_pred             cccceEEEEee
Confidence            67889999864

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.80  E-value=9.2e-19  Score=148.17  Aligned_cols=165  Identities=18%  Similarity=0.048  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH-HHHHhhCC
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE-KFARYFEV  176 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~-~~~~~~G~  176 (356)
                      .+++++++++++.+.     ..+++++|||+|+..++.+++.+             +++|+++.+.|++.. ..+...|+
T Consensus         3 ~~~~~~l~~~~~~~~-----~~~~~~~~~t~a~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~g~   64 (170)
T cd01494           3 EELEEKLARLLQPGN-----DKAVFVPSGTGANEAALLALLGP-------------GDEVIVDANGHGSRYWVAAELAGA   64 (170)
T ss_pred             HHHHHHHHHHcCCCC-----CcEEEeCCcHHHHHHHHHHhCCC-------------CCEEEEeecccceehhhHHHhcCC
Confidence            357788999996433     34889999999999999987542             468999999998887 88888999


Q ss_pred             eeEEEEecCCc-cccCHHHHHHHH-hhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          177 ELKEVKLEEGY-YVMNPVKAVELV-DENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       177 ~v~~v~~~~~~-~~~d~~~L~~~i-~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      +++.++.+.+. ...|.+.+++.. .+++++++++++++++|...|+++|.++|+++      ++++|+|++++++..+.
T Consensus        65 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~------~~~li~D~a~~~~~~~~  138 (170)
T cd01494          65 KPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEY------GILLLVDAASAGGASPA  138 (170)
T ss_pred             EEEEeccCCCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHc------CCEEEEecccccccccc
Confidence            99999987532 223333555443 45789999999999999999999999999999      99999999999876632


Q ss_pred             cCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       255 ~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      ..    .+....++|.++.|+||++++ .|+|++++|
T Consensus       139 ~~----~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~  170 (170)
T cd01494         139 PG----VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK  170 (170)
T ss_pred             cc----cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence            11    223345799999999999977 899999875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PLN02721 threonine aldolase

Probab=99.80  E-value=8.8e-19  Score=166.68  Aligned_cols=199  Identities=13%  Similarity=0.053  Sum_probs=137.0

Q ss_pred             ccccCCCChHHHHHHHHHH-hcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           61 ASFVTTWMEPECDKLVMAS-INKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        61 ~~~~~~~~~~~v~~~i~~~-~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      .+..++.+.+.+.+++... .+..  .+...+...    ++++.+++++|.+.       ++++++|++++..++.+...
T Consensus        11 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~----~l~~~la~~~~~~~-------~~~~~~Gs~a~~~~l~~~~~   77 (353)
T PLN02721         11 RSDTVTKPTDAMRAAMANAEVDDD--VLGYDPTAL----RLEEEMAKIFGKEA-------ALFVPSGTMGNLISVLVHCD   77 (353)
T ss_pred             hcccccCCCHHHHHHHHhccCCCc--ccCCCHHHH----HHHHHHHHHhCCce-------eEEecCccHHHHHHHHHHcc
Confidence            3333445567788877653 2211  122233344    44555888888864       67888889998877776543


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHH---HHHhhCCeeEEEEecCCccccCHHHHHHHHh-------hCceEEEEe
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEK---FARYFEVELKEVKLEEGYYVMNPVKAVELVD-------ENTICVAAI  209 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-------~~~~~v~~~  209 (356)
                      .            .+++|++++++|+++.+   .+...|++++.+|.+++ +.+|+++|+++++       +++++|+++
T Consensus        78 ~------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~  144 (353)
T PLN02721         78 V------------RGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNED-GTMDLDAIEAAIRPKGDDHFPTTRLICLE  144 (353)
T ss_pred             C------------CCCeEEEcCccceehhcccchhhhcCceeEecCCCcC-CCcCHHHHHHHHHhccCCCCCcceEEEEe
Confidence            1            15789999999987665   56788999999998764 8999999999998       578888886


Q ss_pred             c-CCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCe
Q 018437          210 L-GSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV  285 (356)
Q Consensus       210 ~-~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~  285 (356)
                      . ++||+|.+.|   +++|.++|+++      |+++|+|++|..+... ..+ ...+-...++|++++++||++++|.| 
T Consensus       145 ~~~~np~G~~~~~~~l~~l~~l~~~~------g~~livD~a~~~~~~~-~~~-~~~~~~~~~~d~~~~s~sK~l~~~~G-  215 (353)
T PLN02721        145 NTHANCGGRCLSVEYTDKVGELAKRH------GLKLHIDGARIFNASV-ALG-VPVHRLVKAADSVSVCLSKGLGAPVG-  215 (353)
T ss_pred             ccccccCCccccHHHHHHHHHHHHHc------CCEEEEEchhhhcchh-hhC-CCHHHHhhhCCEEEEecccccCCcee-
Confidence            6 4677888754   78999999999      9999999987532210 011 11111134789999999999987654 


Q ss_pred             eEEEEeCCCC
Q 018437          286 GWVVWRTKDD  295 (356)
Q Consensus       286 g~l~~~~~~~  295 (356)
                       .+++.+++.
T Consensus       216 -~~~~~~~~~  224 (353)
T PLN02721        216 -SVIVGSKSF  224 (353)
T ss_pred             -eEEecCHHH
Confidence             333444433

>PRK09082 methionine aminotransferase; Validated

Probab=99.80  E-value=2.2e-18  Score=166.29  Aligned_cols=210  Identities=14%  Similarity=0.049  Sum_probs=160.1

Q ss_pred             cccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|+.+.+..+ ++.+.+++.+.+......|....+...+++++.+++.+++|.+.+.  ...+++|+|+++++..++.+
T Consensus        33 i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~--~~~i~~t~G~~~al~~~~~~  110 (386)
T PRK09082         33 INLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDA--DSEITVTAGATEALFAAILA  110 (386)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCCHHHHHHHHHHH
Confidence            45555544433 4677788777665443445556688999999999999999986421  12488999999999998887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      +.++             +++|+++.++|..+...++..|++++.+|++++++.+|++++++++++++++|++++|+||||
T Consensus       111 ~~~~-------------gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG  177 (386)
T PRK09082        111 LVRP-------------GDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSG  177 (386)
T ss_pred             HcCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCC
Confidence            7542             578999999999999999999999999999754589999999999988899999999999999


Q ss_pred             cc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc----CCCceEEEEcCCcCCC-CCcCeeEE
Q 018437          217 EF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR----LPLVKSINVSGHKYGL-VYAGVGWV  288 (356)
Q Consensus       217 ~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~----~~~~Ds~~~~~hK~l~-~P~g~g~l  288 (356)
                      .+   +++++|.++|+++      ++++++|.+|+.+..+   ......+.    ...-..+..++.|.++ ....+|++
T Consensus       178 ~~~~~~~~~~i~~~a~~~------~i~li~De~y~~~~~~---~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~i  248 (386)
T PRK09082        178 TVWSAADMRALWQLIAGT------DIYVLSDEVYEHIVFD---GAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYC  248 (386)
T ss_pred             cCCCHHHHHHHHHHHHHC------CEEEEEehhhhhhccC---CCCCCChhhCcCccCcEEEEeechhhccchhhhhhhh
Confidence            87   6789999999999      9999999999875442   11111111    1123455567899874 44568898


Q ss_pred             EEe
Q 018437          289 VWR  291 (356)
Q Consensus       289 ~~~  291 (356)
                      +..
T Consensus       249 v~~  251 (386)
T PRK09082        249 VAP  251 (386)
T ss_pred             hCC
Confidence            864

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.80  E-value=7.5e-18  Score=163.53  Aligned_cols=212  Identities=13%  Similarity=0.065  Sum_probs=156.8

Q ss_pred             cccccccCC--CChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           58 LNLASFVTT--WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        58 ~~l~~~~~~--~~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      ++|..+.+.  ++++.+.+.+.+.++.. ...|....+...+++++.+++++.+|.+.+.  ...+++|+|+++++..++
T Consensus        42 i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~--~~~I~it~Ga~~al~~~~  119 (405)
T PRK06207         42 VDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDA--ADELIITPGTQGALFLAV  119 (405)
T ss_pred             eecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCCEEEeCCcHHHHHHHH
Confidence            455544444  24467777777766542 2345556688899999999999999975311  035899999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC----CccccCHHHHHHHHhhCceEEEEec
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE----GYYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~----~~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      .++.++             +++|+++.|+|+.+...++..|++++.|+++.    +++.+|+++|++++++++++|++++
T Consensus       120 ~~l~~~-------------Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~  186 (405)
T PRK06207        120 AATVAR-------------GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSN  186 (405)
T ss_pred             HHhcCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECC
Confidence            877543             57999999999999999999999999999862    2488999999999988899999999


Q ss_pred             CCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-cccC-CCceEEEEcCCcCCC-CCcC
Q 018437          211 GSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRL-PLVKSINVSGHKYGL-VYAG  284 (356)
Q Consensus       211 ~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~-~~~Ds~~~~~hK~l~-~P~g  284 (356)
                      |+||||.+.+   +++|.++|+++      ++++++|++|+.+...- .+.... .+.. ..--.+..|+.|.++ ....
T Consensus       187 P~NPTG~~~s~e~l~~l~~~a~~~------~~~iI~De~Y~~~~~~~-~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlR  259 (405)
T PRK06207        187 PNNPAGVVYSAEEIAQIAALARRY------GATVIVDQLYSRLLYDG-TSYTHLRALPIDPENVITIMGPSKTESLSGYR  259 (405)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccccccCC-CCCCchhcCCCCcCcEEEEecchhhccCcccc
Confidence            9999999966   77788999999      99999999998754310 000000 1111 111245556899875 4456


Q ss_pred             eeEEEEe
Q 018437          285 VGWVVWR  291 (356)
Q Consensus       285 ~g~l~~~  291 (356)
                      +|+++..
T Consensus       260 iG~ii~~  266 (405)
T PRK06207        260 LGVAFGS  266 (405)
T ss_pred             eEEEEcC
Confidence            9998753

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.80  E-value=7.4e-18  Score=162.77  Aligned_cols=212  Identities=14%  Similarity=0.043  Sum_probs=156.6

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      +.|+.+.+.. +++.+.+++.+++.. ....|....+...+++++++++++.+|.+.+.  ...+++|+|+++++..++.
T Consensus        30 ~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~--~~~i~~t~G~~~~l~~~~~  107 (389)
T PRK05957         30 ISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNN--EQAIVVTAGSNMAFMNAIL  107 (389)
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCeEEEeCChHHHHHHHHH
Confidence            4566655553 456788888777643 22345556688899999999999999985320  1347899999999988887


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      ++..+             +++|+++.|+|..+...++..|++++.+|+++ ++.+|+++|++++++++++|++++|+|||
T Consensus       108 ~~~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~klv~~~~p~NPt  173 (389)
T PRK05957        108 AITDP-------------GDEIILNTPYYFNHEMAITMAGCQPILVPTDD-NYQLQPEAIEQAITPKTRAIVTISPNNPT  173 (389)
T ss_pred             HhcCC-------------CCEEEEeCCCCcCHHHHHHhcCCEEEEeecCC-CCCcCHHHHHHhcCcCceEEEEeCCCCCC
Confidence            76432             57899999999888888888999999999975 48999999999998889999999999999


Q ss_pred             cccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-ccc-cCCCceEEEEcCCcCCC-CCcCeeEEE
Q 018437          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF-RLPLVKSINVSGHKYGL-VYAGVGWVV  289 (356)
Q Consensus       216 G~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-~~~~~Ds~~~~~hK~l~-~P~g~g~l~  289 (356)
                      |.+.+   +++|.++|+++      |+++++|++|+.+...- .+... ..+ ....-..+..+..|.++ ....+|+++
T Consensus       174 G~~~~~~~~~~i~~~a~~~------~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~  246 (389)
T PRK05957        174 GVVYPEALLRAVNQICAEH------GIYHISDEAYEYFTYDG-VKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMV  246 (389)
T ss_pred             CcCcCHHHHHHHHHHHHHc------CcEEEEeccchhccCCC-CCccChhhCCCccCcEEEEecchhhccCccceeEEEe
Confidence            99977   88899999999      99999999998754310 01111 111 11111233455779763 333599998


Q ss_pred             EeC
Q 018437          290 WRT  292 (356)
Q Consensus       290 ~~~  292 (356)
                      +.+
T Consensus       247 ~~~  249 (389)
T PRK05957        247 IPI  249 (389)
T ss_pred             cCH
Confidence            743

>PRK07337 aminotransferase; Validated

Probab=99.80  E-value=8e-18  Score=162.48  Aligned_cols=209  Identities=16%  Similarity=0.072  Sum_probs=157.0

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|..+.+.. +++.+.+++.+++......|....+...+++.+.+++.+.+|.+.+.   ..+++|+|+++++.+++.+
T Consensus        33 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~~i~~t~G~~~al~~~~~~  109 (388)
T PRK07337         33 IHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAP---ERIVVTAGASAALLLACLA  109 (388)
T ss_pred             EEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh---HhEEEecCcHHHHHHHHHH
Confidence            4455555543 34677888877775444455555678899999999998888875422   3488999999999888887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      +.++             +++|+++.++|..+...++..|++++.+|+++ +++.+|+++|++.+.+++++|++++|+|||
T Consensus       110 l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPt  176 (388)
T PRK07337        110 LVER-------------GDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPT  176 (388)
T ss_pred             hcCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCC
Confidence            6542             57999999999999999999999999999975 358999999999999889999999999999


Q ss_pred             cccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEE-EcCCcCCC-CCcCeeEEEE
Q 018437          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSIN-VSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       216 G~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~-~~~hK~l~-~P~g~g~l~~  290 (356)
                      |.+.+   +++|.++|+++      ++++++|.+|..+..   .+. .........+.++ .|.+|.++ ....+|+++.
T Consensus       177 G~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~---~~~-~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~  246 (388)
T PRK07337        177 GTSIAPDELRRIVEAVRAR------GGFTIVDEIYQGLSY---DAA-PVSALSLGDDVITINSFSKYFNMTGWRLGWLVV  246 (388)
T ss_pred             CcCcCHHHHHHHHHHHHHC------CCEEEEecccccccc---CCC-CcChhhccCCEEEEEechhhcCCchhheeeeec
Confidence            99854   68888999999      999999999986433   111 1111111234444 47899874 4456899987


Q ss_pred             eC
Q 018437          291 RT  292 (356)
Q Consensus       291 ~~  292 (356)
                      .+
T Consensus       247 ~~  248 (388)
T PRK07337        247 PE  248 (388)
T ss_pred             CH
Confidence            53

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.79  E-value=7e-18  Score=160.64  Aligned_cols=199  Identities=17%  Similarity=0.072  Sum_probs=149.5

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      ++.+.+++.+... ....|....+...+++++.+++.+.+|++.+.  ...+++|+|+++++..++.++.++        
T Consensus        15 ~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~~Iiit~Gs~~ai~~~~~~~~~~--------   83 (350)
T TIGR03537        15 PPFIRKALIDAVP-EVSQYPSALGTKALREAISGWFERRFGVKLDP--DAQVLPSAGSKEAIFHFPLVFIDP--------   83 (350)
T ss_pred             CHHHHHHHHHHHh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEcCChHHHHHHHHHHHcCC--------
Confidence            5677888776654 33445555677899999999999888876421  115899999999999888877542        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec-CCccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHH
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLL  224 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I  224 (356)
                      |  ..+++|+++.|+|..+...++..|++++.++++ ++++.+|++++++++.++++++++++|+||||.+.+   +++|
T Consensus        84 g--~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l  161 (350)
T TIGR03537        84 E--EDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKET  161 (350)
T ss_pred             C--CCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHH
Confidence            1  113689999999999999999999999999997 345789999999999889999999999999999877   8889


Q ss_pred             HHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C-CCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          225 HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L-PLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       225 ~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~-~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      .++|+++      ++++++|++|+.+...    .....+. . ..-..+..+.+|.++ .....|+++.
T Consensus       162 ~~~a~~~------~~~ii~De~y~~~~~~----~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~  220 (350)
T TIGR03537       162 IAMCREH------GIILCSDECYTEIYFG----EPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAG  220 (350)
T ss_pred             HHHHHHc------CcEEEEeccccccccC----CCCCchhhcCcCCEEEEeecccccCCccccceeeec
Confidence            9999999      9999999999864331    1111111 1 111244457899863 3456888864

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK07324 transaminase; Validated

Probab=99.79  E-value=3.4e-18  Score=164.22  Aligned_cols=205  Identities=13%  Similarity=0.027  Sum_probs=149.0

Q ss_pred             CCCCcccccccCCCCh-HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHH
Q 018437           54 GNPRLNLASFVTTWME-PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (356)
Q Consensus        54 ~~~~~~l~~~~~~~~~-~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (356)
                      ++...++..+.+..+. +.+ +++..++......|....+...+++++.+++.   ++++     ..+++|+|+++++.+
T Consensus        25 ~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~---~~~~-----~~vi~t~G~~~al~~   95 (373)
T PRK07324         25 ESCIDSLTLEELLALAGKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQ---NVKP-----ENILQTNGATGANFL   95 (373)
T ss_pred             cCCCCCCcHHHHHhccCcch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhc---CCCh-----hhEEEcCChHHHHHH
Confidence            3444444444444332 345 66666666555566666677777776544432   3444     348899999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecC
Q 018437          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      ++.++.++             +++|+++.|+|..+...++..|++++.+|+++ +++.+|+++|++++.+++++|++++|
T Consensus        96 ~~~~l~~~-------------gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p  162 (373)
T PRK07324         96 VLYALVEP-------------GDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNA  162 (373)
T ss_pred             HHHHhCCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCC
Confidence            99887543             57899999999999999999999999999975 34789999999999889999999999


Q ss_pred             CCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCC-CCcCee
Q 018437          212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVG  286 (356)
Q Consensus       212 ~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~-~P~g~g  286 (356)
                      +||||.+-+   +++|+++|+++      ++++++|++|..+...   .. ...+. ...-.....+..|.++ ....+|
T Consensus       163 ~NPtG~~~~~~~l~~i~~~a~~~------~~~ii~De~y~~l~~~---~~-~~s~~~~~~~~I~~~s~SK~~~~~G~RiG  232 (373)
T PRK07324        163 NNPTGALMDRAYLEEIVEIARSV------DAYVLSDEVYRPLDED---GS-TPSIADLYEKGISTNSMSKTYSLPGIRVG  232 (373)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEccccccccC---CC-CCChhhccCCEEEEecchhhcCCccceeE
Confidence            999999977   88999999999      9999999999875431   11 11111 1111233446889765 456789


Q ss_pred             EEEE
Q 018437          287 WVVW  290 (356)
Q Consensus       287 ~l~~  290 (356)
                      +++.
T Consensus       233 ~i~~  236 (373)
T PRK07324        233 WIAA  236 (373)
T ss_pred             EEec
Confidence            9987

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.79  E-value=4e-18  Score=161.86  Aligned_cols=189  Identities=15%  Similarity=0.002  Sum_probs=138.4

Q ss_pred             hHHHHHHHHHHhcccCCCcc---cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           69 EPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +|.+.+++.+++......+.   ...+.....+++++.+++++|.+.       .+++++|++++..++.++..+     
T Consensus        17 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-------~iv~~sg~~a~~~~~~~~~~~-----   84 (349)
T cd06454          17 HPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEA-------ALVFSSGYAANDGVLSTLAGK-----   84 (349)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCC-------EEEeccHHHHHHHHHHHhcCC-----
Confidence            47888888888764222111   122455666788888999999863       567777889998887766532     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-----CceEEEEecCCCcccccCC
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-----NTICVAAILGSTLTGEFED  220 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-----~~~~v~~~~~~~~tG~~~~  220 (356)
                              +++|+++.++|+++...++..|++++.++.      +|++.+++++++     ++++|++++++|++|.+.|
T Consensus        85 --------gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~  150 (349)
T cd06454          85 --------GDLIISDSLNHASIIDGIRLSGAKKRIFKH------NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP  150 (349)
T ss_pred             --------CCEEEEehhhhHHHHHHHHHcCCceEEecC------CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC
Confidence                    578999999999999888989999877752      467788888864     4678888999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCC-CCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP-DLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~-~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      +++|.++|+++      ++++|+|++|+.+..+.... ....+....+.|.++.++||+++. .| |+++.+
T Consensus       151 ~~~i~~~~~~~------~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g-G~i~~~  214 (349)
T cd06454         151 LPELVDLAKKY------GAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VG-GYIAGS  214 (349)
T ss_pred             HHHHHHHHHHc------CCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cC-CEEECC
Confidence            99999999999      99999999997543321100 001122234789999999998854 44 666543

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.79  E-value=1.4e-17  Score=152.19  Aligned_cols=214  Identities=17%  Similarity=0.140  Sum_probs=162.2

Q ss_pred             CCcccccccCCC-----ChHHHHHHHHHHhcccCC-CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHH
Q 018437           56 PRLNLASFVTTW-----MEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (356)
Q Consensus        56 ~~~~l~~~~~~~-----~~~~v~~~i~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (356)
                      |.+.++.+-|+.     ..+.+.+++.+++..+-+ .|..+.|....++++.+++.+-+...-   ....+++|+|.++|
T Consensus        62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl---~a~DV~ltsGC~qA  138 (447)
T KOG0259|consen   62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKL---TADDVVLTSGCSQA  138 (447)
T ss_pred             eeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCcc---CcCceEEeccchHH
Confidence            334455544442     236788888888876544 467777888888887776555433332   22458999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEe-cCCccccCHHHHHHHHhhCceEEEE
Q 018437          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDENTICVAA  208 (356)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~~~~~v~~  208 (356)
                      +.+++.++.++             +.+|++|.|+++-|...+...|++|++.++ .+++|++|++.+|..++++|.++++
T Consensus       139 Ie~~i~~LA~p-------------~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv  205 (447)
T KOG0259|consen  139 IELAISSLANP-------------GANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV  205 (447)
T ss_pred             HHHHHHHhcCC-------------CCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEE
Confidence            99999988654             568999999999999999999999999998 3456999999999999999999999


Q ss_pred             ecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEc-CCc-CCCC
Q 018437          209 ILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVS-GHK-YGLV  281 (356)
Q Consensus       209 ~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~-~hK-~l~~  281 (356)
                      +.|+||+|.+   +-+++|+++|+++      ++.++.|++|+..+++   +.+-..+.  -.-+-.++.+ ..| |+--
T Consensus       206 iNP~NPcGnVys~~HL~kiae~A~kl------gi~vIaDEVY~~~vfg---~~pfvpmg~fssiVPVitlggisKrW~VP  276 (447)
T KOG0259|consen  206 INPNNPCGNVYSEDHLKKIAETAKKL------GIMVIADEVYGHTVFG---DKPFVPMGKFSSIVPVITLGGISKRWIVP  276 (447)
T ss_pred             eCCCCCCcccccHHHHHHHHHHHHHh------CCeEEehhhcceeecC---CCCccchhhccccCceEeecccccccccC
Confidence            9999999998   5699999999999      9999999999987653   21111111  1224445544 345 6655


Q ss_pred             CcCeeEEEEeCCC
Q 018437          282 YAGVGWVVWRTKD  294 (356)
Q Consensus       282 P~g~g~l~~~~~~  294 (356)
                      .|..|+++..|..
T Consensus       277 GWRlGWi~~hD~~  289 (447)
T KOG0259|consen  277 GWRLGWIALHDPR  289 (447)
T ss_pred             CceeeeEEEeccc
Confidence            6899999998753

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.79  E-value=2.5e-17  Score=159.87  Aligned_cols=214  Identities=15%  Similarity=0.132  Sum_probs=155.3

Q ss_pred             CCCCcccccccCC-----CChHHHHHHHHHHhcccC-CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChh
Q 018437           54 GNPRLNLASFVTT-----WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS  127 (356)
Q Consensus        54 ~~~~~~l~~~~~~-----~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt  127 (356)
                      +...++|+.+.|.     ++++.+.+++.+.+.... ..|....+...+++.+.+++....|.+.+   ...+++|+|++
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~---~~~ii~t~G~t  106 (403)
T TIGR01265        30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLT---ADDVVLTSGCS  106 (403)
T ss_pred             CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC---HHHEEEecChH
Confidence            4444567666663     345688888887775432 23444556667777766666654444321   13488999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEE
Q 018437          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICV  206 (356)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v  206 (356)
                      +|+.+++.++..+             +++|+++.++|..+...++..|++++.++++. +++.+|++++++++.++++++
T Consensus       107 ~al~~~~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v  173 (403)
T TIGR01265       107 QAIEICIEALANP-------------GANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAI  173 (403)
T ss_pred             HHHHHHHHHhCCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEE
Confidence            9999999887532             57899999999999999999999999998854 347899999999998889999


Q ss_pred             EEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C-CCceE-EEEcCCcC-C
Q 018437          207 AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L-PLVKS-INVSGHKY-G  279 (356)
Q Consensus       207 ~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~-~~~Ds-~~~~~hK~-l  279 (356)
                      ++++|+||||.+.+   +++|.++|+++      ++++++|++|+.+...   ......+. + ..... +..|..|. +
T Consensus       174 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~---~~~~~~~~~~~~~~~vi~~~S~SK~~~  244 (403)
T TIGR01265       174 VVINPSNPCGSVFSRDHLQKIAEVARKL------GIPIIADEIYGHMVFG---DAPFIPMASFASIVPVLSLGGISKRWV  244 (403)
T ss_pred             EEecCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEccccccccC---CCCccchhhhccCCcEEEEeecccccC
Confidence            99999999999954   88999999999      9999999999876531   11111111 1 11123 33468997 5


Q ss_pred             CCCcCeeEEEEeC
Q 018437          280 LVYAGVGWVVWRT  292 (356)
Q Consensus       280 ~~P~g~g~l~~~~  292 (356)
                      .....+|+++..+
T Consensus       245 ~pGlRiG~~v~~~  257 (403)
T TIGR01265       245 VPGWRLGWIIIHD  257 (403)
T ss_pred             CCcceEEEEEEeC
Confidence            5557899998754

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.79  E-value=2.7e-17  Score=159.39  Aligned_cols=211  Identities=10%  Similarity=0.026  Sum_probs=155.8

Q ss_pred             CCcccccccCCC-ChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHH
Q 018437           56 PRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (356)
Q Consensus        56 ~~~~l~~~~~~~-~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (356)
                      ..++|..+.+.. +++.+.+++.+.++.. .+.|. ..+...+++.+.+++.+.+|++.+.  ...+++|+|+++++.++
T Consensus        33 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~--~~~I~it~G~~~al~~~  109 (399)
T PRK07681         33 KMIDLSIGNPDMPPADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNA--DKEVLLLMGSQDGLVHL  109 (399)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCC--CCeEEECCCcHHHHHHH
Confidence            334555555442 3467788887766532 22222 3578889999999999888876421  13588999999999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEecCC
Q 018437          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGS  212 (356)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (356)
                      +.++.++             ++.|+++.|+|+.+...++..|++++.+|++++ .+.+|++++++++.+++++|++++|+
T Consensus       110 ~~~~~~~-------------Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~  176 (399)
T PRK07681        110 PMVYANP-------------GDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPG  176 (399)
T ss_pred             HHHhCCC-------------CCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCC
Confidence            8877543             579999999999999999999999999999753 47899999999998889999999999


Q ss_pred             CcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CC---CceEEEEcCCcCCC-CCcC
Q 018437          213 TLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LP---LVKSINVSGHKYGL-VYAG  284 (356)
Q Consensus       213 ~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~---~~Ds~~~~~hK~l~-~P~g  284 (356)
                      ||||.+.+   +++|.++|+++      ++++++|++|+.+...   +.....+. ..   .-..+.-|+.|.++ ....
T Consensus       177 NPTG~~~s~~~~~~i~~~a~~~------~~~iI~De~y~~~~~~---~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR  247 (399)
T PRK07681        177 NPVPAMAHEDFFKEVIAFAKKH------NIIVVHDFAYAEFYFD---GNKPISFLSVPGAKEVGVEINSLSKSYSLAGSR  247 (399)
T ss_pred             CCcCcCCCHHHHHHHHHHHHHc------CeEEEEeccchhheeC---CCCCCChhhCCCCcccEEEEeecccccCCccce
Confidence            99999966   77888999999      9999999999876531   11111111 11   12344457899874 4466


Q ss_pred             eeEEEEe
Q 018437          285 VGWVVWR  291 (356)
Q Consensus       285 ~g~l~~~  291 (356)
                      +|+++..
T Consensus       248 iG~~i~~  254 (399)
T PRK07681        248 IGYMIGN  254 (399)
T ss_pred             eEEEecC
Confidence            9999753

>PLN02271 serine hydroxymethyltransferase

Probab=99.79  E-value=3.4e-17  Score=159.61  Aligned_cols=260  Identities=10%  Similarity=-0.009  Sum_probs=171.2

Q ss_pred             CChHHHHHHHHHHhcccC--CCc-----ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNY--VDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~--~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      ..++.+.+++.+.+.+..  +.+     .......++|..+.+...++||++..+  ...-+-..+|+.||+.++.++.+
T Consensus       159 ~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~--~gaNVQp~SGs~AN~aV~~ALl~  236 (586)
T PLN02271        159 FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEK--WGVNVQPYSCTSANFAVYTGLLL  236 (586)
T ss_pred             cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccc--cccceeeccHHHHHHHHHHHhcC
Confidence            456788888876654321  111     112355689999999999999988522  10124555889999999988865


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCC---cchHH------HHHHhhCCeeEEEE--ecCCccccCHHHHHH-HHhhCceEEE
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANV---QVCWE------KFARYFEVELKEVK--LEEGYYVMNPVKAVE-LVDENTICVA  207 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~---h~s~~------~~~~~~G~~v~~v~--~~~~~~~~d~~~L~~-~i~~~~~~v~  207 (356)
                      +             +++|+..+..   |.+..      ..+...|..+..+|  +|++++.+|.++|++ ++..+|++|+
T Consensus       237 P-------------GD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII  303 (586)
T PLN02271        237 P-------------GDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILI  303 (586)
T ss_pred             C-------------CCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEE
Confidence            3             5788875554   44432      23345576666666  665569999999998 6677899998


Q ss_pred             EecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeE
Q 018437          208 AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW  287 (356)
Q Consensus       208 ~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~  287 (356)
                      +.+..++  ...|+++|.++|+++      |+++++|+|+..+.++-  ...+  -...++|.++.++|||+.+|.| |+
T Consensus       304 ~g~Sayp--r~~D~~~i~eIAdev------GA~LmvD~AH~aGLIa~--g~~~--sP~~~aDvvt~TTHKtLrGPrG-G~  370 (586)
T PLN02271        304 CGGSSYP--REWDYARFRQIADKC------GAVLMCDMAHISGLVAA--KECV--NPFDYCDIVTSTTHKSLRGPRG-GI  370 (586)
T ss_pred             ECchhcc--CcCCHHHHHHHHHHc------CCEEEEECccccccccc--CcCC--CCCcCCcEEEeCCcccCCCCCc-eE
Confidence            8776676  667999999999999      99999999998776631  1111  1134799999999999999999 88


Q ss_pred             EEEeCCCCCccccccccCCCCCC-----------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          288 VVWRTKDDLPDELVFHINYLGSD-----------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       288 l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ++++++.. +........|....           ..-+.++|......++++..+++......++++.++.+++|+.|+
T Consensus       371 I~~r~~~~-~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA  448 (586)
T PLN02271        371 IFYRKGPK-LRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALA  448 (586)
T ss_pred             EEeccccc-ccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            88865311 10000000111000           001234444434458888899998766666666666666666553

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.78  E-value=2.2e-17  Score=172.95  Aligned_cols=300  Identities=11%  Similarity=0.028  Sum_probs=197.1

Q ss_pred             ccccccccc-hhhhhcCC-CCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccc-cccCCCChHHHHHHHHH---Hhcc-cC
Q 018437           12 EILSSTFAS-RYVRAAIP-RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLA-SFVTTWMEPECDKLVMA---SINK-NY   84 (356)
Q Consensus        12 ~~~~~~~~~-~~~~~~~~-~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~v~~~i~~---~~~~-~~   84 (356)
                      ++|+++|.. .|..-.+. ...+|+ ++++.+++++++++..++......++ +|.+...|+.+.+-+.+   ++.. .+
T Consensus        32 ~s~~~l~~~~iP~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~~~~~~t~ytP  110 (954)
T PRK05367         32 DSLDALIDQAVPASIRLAEPLDLPA-ALSEAEALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNILENPAWYTAYTP  110 (954)
T ss_pred             CCHHHHhhhhCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHhCcchhhccCC
Confidence            578888887 67655444 346664 58999999999988776543221122 33333444555343332   2322 46


Q ss_pred             CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 018437           85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (356)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h  164 (356)
                      ++++.+++..+...+.+.++++++|++.     ....+..++|.+...++++.+-.          ..++++|++++..|
T Consensus       111 yQ~EisQG~Leal~~~Qt~la~LtG~~~-----anaSl~d~aTAa~ea~~~a~~~~----------~~~~~~vlv~~~~h  175 (954)
T PRK05367        111 YQPEISQGRLEALLNFQTMVADLTGLEI-----ANASLLDEATAAAEAMALAKRVS----------KSKSNRFFVDDDVH  175 (954)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHCCCh-----hhccccccHHHHHHHHHHhhhhc----------cCCCCEEEEcCccC
Confidence            6667788999999999999999999997     33678888888877555544321          01136899999999


Q ss_pred             chHHHH----HHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCc
Q 018437          165 VCWEKF----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (356)
Q Consensus       165 ~s~~~~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~  240 (356)
                      ++....    ++..|++++.+|.+++   ++        ++++..+++.+| |.+|.+.|+++|+++||++      |++
T Consensus       176 P~~~~v~~t~a~~~G~ev~~~~~~~d---~~--------~~~~~~vlvq~p-~~~G~i~d~~~i~~~ah~~------Gal  237 (954)
T PRK05367        176 PQTLDVLRTRAEPLGIEVVVGDAAKA---LD--------HDDVFGVLLQYP-GTSGEVRDYTALIAAAHAR------GAL  237 (954)
T ss_pred             HHHHHHHHHHHHhCCCEEEEecCccC---CC--------cccEEEEEEecC-CCCeeeccHHHHHHHHHHc------CCE
Confidence            986644    4567999999997542   11        235556655565 6679999999999999999      999


Q ss_pred             EEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc-----CeeEEEEeCCCCCcccccc-ccCCC----CCC
Q 018437          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-----GVGWVVWRTKDDLPDELVF-HINYL----GSD  310 (356)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-----g~g~l~~~~~~~~~~~~~~-~~~~~----~~~  310 (356)
                      ++||+.+.....  +.     +....|+|.++.++|||+ +|.     ++|++++|++ +. +.+.. -..|.    +..
T Consensus       238 ~~vda~~~Al~~--l~-----~pge~GaDi~vgs~qkfg-~P~g~GGP~aGflavr~~-~~-r~lpgrivG~s~d~~g~~  307 (954)
T PRK05367        238 VAVAADLLALTL--LT-----PPGEMGADIAVGSAQRFG-VPMGFGGPHAAYFAVRDA-YK-RSMPGRIVGVSVDAAGNP  307 (954)
T ss_pred             EEEEehhhhccC--CC-----ChhhcCCCEEEeeCcccC-CCCCCCCCCEEEEEECHH-HH-hhCCCCeeeeecccCCCc
Confidence            999996643333  11     112458999999999994 333     5999999864 21 22111 01111    100


Q ss_pred             ----------CCCccccC-----CCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          311 ----------QPTFTLNF-----SKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       311 ----------~~~~~~~~-----tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                                +...-..+     |-++..++..+.++..+|.+|++++.+++..+++||+
T Consensus       308 ~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~  367 (954)
T PRK05367        308 ALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILA  367 (954)
T ss_pred             ccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence                      00000112     3333334445556788999999999999999998875

>PRK07179 hypothetical protein; Provisional

Probab=99.78  E-value=9.5e-18  Score=162.97  Aligned_cols=189  Identities=9%  Similarity=-0.068  Sum_probs=137.4

Q ss_pred             ChHHHHHHHHHHhcccCCCc---ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDM---DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      ..|.+.+++.+.+......+   ...........++.+.+++++|.+.       .++++||++||..++.++..+    
T Consensus        69 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~-------~~~~~sG~~An~~~l~~l~~~----  137 (407)
T PRK07179         69 GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFES-------CLLCQSGWAANVGLLQTIADP----  137 (407)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHhCCC----
Confidence            35788888887775432111   1111111234455567999999864       688999999999998877542    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHH
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKL  223 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~  223 (356)
                               ++.|+++...|.++...++..|++++.++      ..|+++|++++++ ++++|++.+++|++|.+.|+++
T Consensus       138 ---------g~~v~~~~~~h~s~~~~~~~~g~~~~~~~------~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~  202 (407)
T PRK07179        138 ---------NTPVYIDFFAHMSLWEGVRAAGAQAHPFR------HNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLAD  202 (407)
T ss_pred             ---------CCEEEEECCcCHHHHHHHHHCCCeEEEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHH
Confidence                     46889999999999888888887754432      2489999999976 5788889999999999999999


Q ss_pred             HHHHHHHhhhccCCCCcEEEecccccccccccCCCC---cccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL---EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       224 I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~---~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      |.++|+++      ++++|+|++|+.+..+. ....   .+++ .+++|.++.+.||++++  ++|+++.++
T Consensus       203 I~~l~~~~------~~~livDea~~~g~~g~-~g~g~~~~~~~-~~~vdi~~~S~sK~~g~--~~G~l~~~~  264 (407)
T PRK07179        203 IVDIAEEF------GCVLVVDESHSLGTHGP-QGAGLVAELGL-TSRVHFITASLAKAFAG--RAGIITCPR  264 (407)
T ss_pred             HHHHHHHc------CCEEEEECcccccCcCC-CCCchHHhcCC-CCCCCEEEeechHhhhc--cCeEEEeCH
Confidence            99999999      99999999997544310 0000   1111 13679999999999854  378887754

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.78  E-value=2.9e-17  Score=158.76  Aligned_cols=212  Identities=10%  Similarity=0.014  Sum_probs=157.9

Q ss_pred             CCcccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           56 PRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        56 ~~~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      ..++|..+.+..+ ++.+.+++.+.+......|....+...+++++.+++.+.+|...+   ...+++|+|+++++..++
T Consensus        32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~---~~~i~~~~g~~~a~~~~~  108 (393)
T PRK05764         32 DVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYD---PSQVIVTTGAKQALYNAF  108 (393)
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCC---HHHEEEeCCcHHHHHHHH
Confidence            3345555555544 467888887777544344555667888999988888887775431   134899999999999888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      .++.++             ++.|+++.++|..+..+++..|++++.+|+++ +.+.+|+++|++++++++++|++++|+|
T Consensus       109 ~~~~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~N  175 (393)
T PRK05764        109 MALLDP-------------GDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSN  175 (393)
T ss_pred             HHhcCC-------------CCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCC
Confidence            876542             56899999999999999999999999999974 3478999999999988889999999999


Q ss_pred             cccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCC--Ccccc--cCCCceEEEEcCCcCCCCC-cCe
Q 018437          214 LTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD--LEWDF--RLPLVKSINVSGHKYGLVY-AGV  285 (356)
Q Consensus       214 ~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~--~~~~~--~~~~~Ds~~~~~hK~l~~P-~g~  285 (356)
                      |||.+-   ++++|.++|+++      ++++++|.+|+.+...  ...  ....+  .....+.+..++.|.++.| ..+
T Consensus       176 PtG~~~~~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri  247 (393)
T PRK05764        176 PTGAVYSPEELEAIADVAVEH------DIWVLSDEIYEKLVYD--GAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRL  247 (393)
T ss_pred             CCCcccCHHHHHHHHHHHHHC------CcEEEEeccccceeeC--CCCcccHHHcCCCCcCCEEEEecCcccccCcccee
Confidence            999984   588999999999      9999999999875431  110  00111  1223456677789987533 347


Q ss_pred             eEEEEe
Q 018437          286 GWVVWR  291 (356)
Q Consensus       286 g~l~~~  291 (356)
                      |+++..
T Consensus       248 G~i~~~  253 (393)
T PRK05764        248 GYAAGP  253 (393)
T ss_pred             EEEecC
Confidence            888753

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.78  E-value=1.9e-17  Score=160.12  Aligned_cols=212  Identities=9%  Similarity=0.006  Sum_probs=151.7

Q ss_pred             CcccccccCCCC-hHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           57 RLNLASFVTTWM-EPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        57 ~~~l~~~~~~~~-~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      .++|..+.|..+ ++.+.+.+...+.. ....|....+...+++++.+++.+.+|.+.+.  ...+++|+|+++++..++
T Consensus        37 ~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~--~~~i~vt~G~~~al~~~~  114 (394)
T PRK05942         37 LIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDP--DSEALPLLGSKEGLTHLA  114 (394)
T ss_pred             eEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCC--CCeEEEccChHHHHHHHH
Confidence            344444444432 34455555544432 22345445577899999999999888875321  113678999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      .++.++             +++|+++.|+|..+...+...|++++.+|++. +++.+|+++|++++.+++++|++++|+|
T Consensus       115 ~~~~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~N  181 (394)
T PRK05942        115 LAYVNP-------------GDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSN  181 (394)
T ss_pred             HHhCCC-------------CCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCC
Confidence            876543             57999999999999988899999999999974 3478999999999988999999999999


Q ss_pred             cccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-c-cccc-CCCceEEEEcCCcCC-CCCcCee
Q 018437          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFR-LPLVKSINVSGHKYG-LVYAGVG  286 (356)
Q Consensus       214 ~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~-~~~~Ds~~~~~hK~l-~~P~g~g  286 (356)
                      |||.+-+   +++|.++|+++      ++++++|++|+.+...  .... . ..+. .........++.|.+ ..+..+|
T Consensus       182 PtG~~~s~~~~~~i~~~a~~~------~~~iI~De~y~~~~~~--~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG  253 (394)
T PRK05942        182 PTTATAPREFFEEIVAFARKY------EIMLVHDLCYAELAFD--GYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVG  253 (394)
T ss_pred             CCCCcCCHHHHHHHHHHHHHc------CeEEEEeccchhhccC--CCCCCChhhCCCccccEEEEecchhccCChhhhee
Confidence            9999976   78899999999      9999999999865431  1000 0 1111 112233345677965 4556799


Q ss_pred             EEEEe
Q 018437          287 WVVWR  291 (356)
Q Consensus       287 ~l~~~  291 (356)
                      +++..
T Consensus       254 ~i~~~  258 (394)
T PRK05942        254 FVVGN  258 (394)
T ss_pred             eeecC
Confidence            99864

>PRK07777 aminotransferase; Validated

Probab=99.78  E-value=2.2e-17  Score=159.39  Aligned_cols=211  Identities=15%  Similarity=0.057  Sum_probs=157.2

Q ss_pred             cccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|..+.+... ++.+.+++.+.+......|....+..++++.+.+++.+.+|.+.+.  ...+++|+|+++++..++.+
T Consensus        27 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~~i~~t~G~~~al~~~~~~  104 (387)
T PRK07777         27 VNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDP--DTEVLVTVGATEAIAAAVLG  104 (387)
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCCcHHHHHHHHHH
Confidence            45555544432 3456666666665444456566788999999999999988986421  12488999999999888876


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC--ccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG--YYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~--~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      +..+             +++|+++.+.|..+..+++..|..++.++++++  ++.+|+++|++++.+++++|++++|+||
T Consensus       105 ~~~~-------------gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NP  171 (387)
T PRK07777        105 LVEP-------------GDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNP  171 (387)
T ss_pred             hcCC-------------CCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCC
Confidence            6432             578999999999999999999999999998753  4789999999999888999999999999


Q ss_pred             ccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCC-Ccc-ccc-CCCceEEEEcCCcCCCC-CcCeeE
Q 018437          215 TGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-LEW-DFR-LPLVKSINVSGHKYGLV-YAGVGW  287 (356)
Q Consensus       215 tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~-~~~-~~~~Ds~~~~~hK~l~~-P~g~g~  287 (356)
                      ||.+.   ++++|.++|+++      ++++++|++|+.+...  ... ... .+. ....+.+..|++|.++. ...+|+
T Consensus       172 tG~~~~~~~~~~l~~~~~~~------~~~li~De~y~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~  243 (387)
T PRK07777        172 TGTVLTAAELAAIAELAVEH------DLLVITDEVYEHLVFD--GARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGW  243 (387)
T ss_pred             CCccCCHHHHHHHHHHHHhc------CcEEEEeccchhcccC--CCCcccHhhCCCCcCcEEEEeechhhccCcCceeEE
Confidence            99984   588899999999      9999999999865431  110 011 111 12356777889998753 355898


Q ss_pred             EEEe
Q 018437          288 VVWR  291 (356)
Q Consensus       288 l~~~  291 (356)
                      ++..
T Consensus       244 ~~~~  247 (387)
T PRK07777        244 ACGP  247 (387)
T ss_pred             EecC
Confidence            8764

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.78  E-value=1.7e-17  Score=161.41  Aligned_cols=215  Identities=16%  Similarity=0.113  Sum_probs=159.1

Q ss_pred             cCCCCcccccccCC-----CChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhC------CCCCCCCCCCe
Q 018437           53 DGNPRLNLASFVTT-----WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFN------TPVADDKTAVG  120 (356)
Q Consensus        53 ~~~~~~~l~~~~~~-----~~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g------~~~~~~~~~~~  120 (356)
                      .+.+.++|+.+.|.     .+++.+.+++.+.++.. ...|....+..++++.+.+++.+.++      ...+   ...+
T Consensus        31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~---~~~i  107 (412)
T PTZ00433         31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIK---KDNV  107 (412)
T ss_pred             CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCC---hhhE
Confidence            34444577777765     34567888887776642 23454455788899888888887654      2211   1458


Q ss_pred             EEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHH
Q 018437          121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELV  199 (356)
Q Consensus       121 ~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i  199 (356)
                      ++|+|+++++.+++.++..+             +++|+++.|+|..+...++..|++++.+|+++ +++.+|+++|++++
T Consensus       108 ~it~G~~~al~~~~~~~~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~  174 (412)
T PTZ00433        108 VLCSGVSHAILMALTALCDE-------------GDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLV  174 (412)
T ss_pred             EEeCChHHHHHHHHHHhcCC-------------CCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHh
Confidence            99999999999998877542             57899999999999999999999999999964 35899999999999


Q ss_pred             hhCceEEEEecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCC-Cc-ccccCCCce-EEEE
Q 018437          200 DENTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-LE-WDFRLPLVK-SINV  273 (356)
Q Consensus       200 ~~~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~-~~~~~~~~D-s~~~  273 (356)
                      ++++++|++++|+||||.+-   ++++|.++|+++      ++++++|++|..+...  ... .. ..+. ...+ .+.-
T Consensus       175 ~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~-~~~~~i~~~  245 (412)
T PTZ00433        175 DDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEEL------RLPLISDEIYAGMVFN--GATFTSVADFD-TTVPRVILG  245 (412)
T ss_pred             ccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHc------CCeEEEeccccccccC--CCCccchhhcc-CCCceEEEc
Confidence            88899999999999999874   577889999999      9999999999875431  100 00 1111 1112 3445


Q ss_pred             cCCcCC-CCCcCeeEEEEeC
Q 018437          274 SGHKYG-LVYAGVGWVVWRT  292 (356)
Q Consensus       274 ~~hK~l-~~P~g~g~l~~~~  292 (356)
                      |+.|.+ .....+|++++.+
T Consensus       246 SfSK~~~~pGlRlG~~i~~~  265 (412)
T PTZ00433        246 GTAKNLVVPGWRLGWLLLVD  265 (412)
T ss_pred             cchhhcCCCCeeEEEEEEeC
Confidence            689976 5668999998743

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.78  E-value=2.2e-17  Score=172.32  Aligned_cols=301  Identities=8%  Similarity=-0.039  Sum_probs=196.8

Q ss_pred             ccccccc-cchhhhhcCCCCCCCC--CCCCHHHHHHHHHHHhhhcCC-CCcccccc-cCCCChHHHHHHHHHHh---cc-
Q 018437           12 EILSSTF-ASRYVRAAIPRFKMPD--NSMPKEAAYQVINDELMLDGN-PRLNLASF-VTTWMEPECDKLVMASI---NK-   82 (356)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~~~~lp~--~~~~~~~i~~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~v~~~i~~~~---~~-   82 (356)
                      ++|+++| ...|..-......+|+  .++++.+++++++++...+.. ..| ++.+ .+...++.+.+.+.+..   .. 
T Consensus        57 ~s~d~l~~~~iP~~i~~~~l~lp~~~~~~sE~e~~~~~~~la~kN~~~~~f-iG~G~y~~~~P~~v~~~i~~~~~~~Tay  135 (993)
T PLN02414         57 DSLDALIDATVPKSIRLDSMKLSKYDEGLTESQMLEHMKSLASKNKVFKSY-IGMGYYNTHVPPVILRNILENPGWYTQY  135 (993)
T ss_pred             cCHHHHhhccCCHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccccc-cCCCCCCccCCHHHHHHHHhChHHHhhc
Confidence            5688888 7777655444556772  578999999999988766543 222 2222 22234556656665332   22 


Q ss_pred             cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCC
Q 018437           83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN  162 (356)
Q Consensus        83 ~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~  162 (356)
                      .++.++.+++..+...+.+.++++|+|++.+     ...++.++|.+...++++.+-.          ..++++|++++.
T Consensus       136 tPYqaEisQG~lqal~~~Qt~ia~LtG~~~a-----naSL~d~aTAaaea~~~a~~~~----------~g~~~~VlVs~~  200 (993)
T PLN02414        136 TPYQAEIAQGRLESLLNYQTMITDLTGLPMS-----NASLLDEGTAAAEAMAMCNNIL----------KGKKKKFLIASN  200 (993)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHhCCChh-----hEeecCChHHHHHHHHHHHhcc----------cCCCCEEEEcCc
Confidence            4555666788899999999999999999973     4789999998887776655321          112468999999


Q ss_pred             CcchHHHHH----HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCC
Q 018437          163 VQVCWEKFA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD  238 (356)
Q Consensus       163 ~h~s~~~~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~  238 (356)
                      .|+++...+    +..|++++.+|++..    |      ...+.+..+++..| |.+|.+.|+++|+++||++      |
T Consensus       201 ~hP~~~~v~~t~a~~~GieV~~v~~~~~----~------~~~~~v~~vlvq~P-~~~G~v~dv~~I~~~ah~~------G  263 (993)
T PLN02414        201 CHPQTIDVCQTRADGLGLEVVVADEKDF----D------YSSGDVCGVLVQYP-ATDGEVLDYAEFVKNAHAN------G  263 (993)
T ss_pred             cCHhHHHHHHHhhhhcCCEEEEecchhh----c------cccCceEEEEEecC-CCCeEEcCHHHHHHHHHHc------C
Confidence            999865444    456999999987531    1      11223444544444 5669999999999999999      9


Q ss_pred             CcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC-----CCCcCeeEEEEeCCCCCcccccc-ccCCCCCCCC
Q 018437          239 TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG-----LVYAGVGWVVWRTKDDLPDELVF-HINYLGSDQP  312 (356)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l-----~~P~g~g~l~~~~~~~~~~~~~~-~~~~~~~~~~  312 (356)
                      ++++| +|+.....+..      +....|+|.++.++|||+     ++|. +|+++++++ .. +.++. -..|......
T Consensus       264 aL~iV-aad~lal~~l~------~pge~GADi~vgsgqKwg~P~G~GGP~-aGflavr~~-~~-r~~PgriVG~s~d~~g  333 (993)
T PLN02414        264 VKVVM-ATDLLALTMLK------PPGEWGADIVVGSAQRFGVPMGYGGPH-AAFLATSQE-YK-RLMPGRIIGVSVDSSG  333 (993)
T ss_pred             CEEEE-EECHHHhcCCC------CHhhccCcEEEECCCccccCCCCCCCC-eeEEEECHH-HH-hhCCCcccCcccCCCC
Confidence            99999 76654433210      122458999999999998     4444 899999874 21 22210 1112100000


Q ss_pred             C--c------------cccCCCChhHHHHHHHH-----HHHhCHHHHHHHHHHHHhccCccc
Q 018437          313 T--F------------TLNFSKGSSQIIAQYYQ-----FIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       313 ~--~------------~~~~tr~~~~~~~~~~~-----l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      .  +            --.+|.+.....++++.     +..+|..|++++.+++.++++||+
T Consensus       334 ~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~  395 (993)
T PLN02414        334 KPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFA  395 (993)
T ss_pred             CcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            0  0            01345555434444443     457799999999999999998875

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.78  E-value=3.7e-18  Score=163.87  Aligned_cols=160  Identities=14%  Similarity=-0.023  Sum_probs=125.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++.|.+.       +++|+||++|+..++.++..+             +++|+++.+.|.....
T Consensus        52 npt~~~Le~~----lA~leg~e~-------ivvt~gg~~Ai~~~l~all~~-------------Gd~Il~~~~~y~~~~~  107 (388)
T PRK08861         52 NPNRGLLEQT----LSELESGKG-------AVVTNCGTSALNLWVSALLGP-------------DDLIVAPHDCYGGTYR  107 (388)
T ss_pred             CchHHHHHHH----HHHHhCCCe-------EEEECCHHHHHHHHHHHHcCC-------------CCEEEEcCCchHHHHH
Confidence            3455556554    888888653       899999999999999877532             5789999998875333


Q ss_pred             H----HHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 F----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .    ....|++++.++.      .|+++++++++++|++|++++|+||||.+.|+++|.++|+++      ++++++|+
T Consensus       108 ~~~~~~~~~gi~v~~vd~------~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~------gi~vIvDe  175 (388)
T PRK08861        108 LFNTRANKGDFKVQFVDQ------SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAV------GALVAVDN  175 (388)
T ss_pred             HHHHHHhcCCeEEEEECC------CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEEC
Confidence            2    2234666666642      478999999998999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTK  293 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~  293 (356)
                      +|..++.  ..   +.+   .++|.++.|.|||+++|.+  .|+++.+++
T Consensus       176 a~~~~~~--~~---pl~---~GaDivv~S~tK~l~G~~d~~gG~i~~~~~  217 (388)
T PRK08861        176 TFLTPVL--QK---PLE---LGADFVIHSTTKYINGHSDVIGGVLITKTK  217 (388)
T ss_pred             Ccccccc--CC---Ccc---cCCCEEEeecceeccCCCcceeEEEEecHH
Confidence            9986543  11   222   3899999999999998876  577766554

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.78  E-value=1.7e-17  Score=147.86  Aligned_cols=249  Identities=15%  Similarity=0.123  Sum_probs=182.4

Q ss_pred             HHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 018437           75 LVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDK  154 (356)
Q Consensus        75 ~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~  154 (356)
                      .+.++++.+... ..+|...++..++.+-+...|.....    .--++...|+.+.-.|+.....+             +
T Consensus        31 ~V~~A~~~~~lg-h~sPe~~qIm~~v~egikyVFkT~n~----~tf~isgsGh~g~E~al~N~leP-------------g   92 (385)
T KOG2862|consen   31 RVQEAMSRPSLG-HMSPEFVQIMDEVLEGIKYVFKTANA----QTFVISGSGHSGWEAALVNLLEP-------------G   92 (385)
T ss_pred             HHHHhhcCCccc-cCCHHHHHHHHHHHHHHHHHhccCCC----ceEEEecCCcchHHHHHHhhcCC-------------C
Confidence            344444433322 24678888999999999988877642    12344445566766666665543             4


Q ss_pred             CeEEecCCCcc--hHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCC-HHHHHHHHHH
Q 018437          155 PNIVTGANVQV--CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED-VKLLHDLLTK  230 (356)
Q Consensus       155 ~~vi~s~~~h~--s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~-i~~I~~i~~~  230 (356)
                      ++|++-...-.  .+...++.+|++|..|+.+.. ....++.+++++.+ ++++|+++++.+.||+.+| ++.+.++|++
T Consensus        93 d~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G-~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k  171 (385)
T KOG2862|consen   93 DNVLVVSTGTWGQRAADCARRYGAEVDVVEADIG-QAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHK  171 (385)
T ss_pred             CeEEEEEechHHHHHHHHHHhhCceeeEEecCcc-cCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhc
Confidence            66655444433  366778889999999998875 68899999999976 6789999999999999999 6778899999


Q ss_pred             hhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC--------cccccc
Q 018437          231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL--------PDELVF  302 (356)
Q Consensus       231 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~--------~~~~~~  302 (356)
                      |      +.+++||++.+.+..+|       .+...++|..-..++|.+++|.|.+++++.++..-        +..+++
T Consensus       172 ~------~~lllVD~VaSlggt~F-------~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yF  238 (385)
T KOG2862|consen  172 H------EALLLVDTVASLGGTEF-------EMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYF  238 (385)
T ss_pred             C------CeEEEEechhhcCCccc-------eehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEE
Confidence            9      99999999876655544       34455899999999999999999999988664221        112222


Q ss_pred             ccC----CCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          303 HIN----YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       303 ~~~----~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      +..    |.+-...-..+..|.+.....++.++|..+-++|+++.++++.+++++|.
T Consensus       239 d~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~  295 (385)
T KOG2862|consen  239 DILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLK  295 (385)
T ss_pred             eHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222    12111111234578888889999999999999999999999999999875

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.78  E-value=3.2e-17  Score=161.18  Aligned_cols=286  Identities=12%  Similarity=0.012  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHh-cccCCCc------ccCcchHHHHHHHHHHHHHHhCCC
Q 018437           39 KEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASI-NKNYVDM------DEYPVTTELQNRCVNMIAHLFNTP  111 (356)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~-~~~~~~~------~~~~~~~~le~~~~~~la~l~g~~  111 (356)
                      ..++.+.+.+...+..+ .++|.. .-+..++.+.+++.+.+ +.....+      .......++|+.+++...++||..
T Consensus        19 d~~~~~~i~~e~~~q~~-~l~lia-sen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~   96 (475)
T PLN03226         19 DPEIADIIEKEKRRQWK-GLELIA-SENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLD   96 (475)
T ss_pred             CHHHHHHHHHHHHHHHc-CeeEec-CCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCC
Confidence            45566666655544321 122211 11245678888888777 4322221      112355788888888899999988


Q ss_pred             CCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC---CCcch---HHHHHHhhCCee--E--EE
Q 018437          112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA---NVQVC---WEKFARYFEVEL--K--EV  181 (356)
Q Consensus       112 ~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~---~~h~s---~~~~~~~~G~~v--~--~v  181 (356)
                      ...  ....+-+++|+.||+.++.++..+             +++|+..+   ..|.+   .....+.-+..+  .  ..
T Consensus        97 ~~~--~~~nv~~~SG~~AN~av~~aL~~p-------------gD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y  161 (475)
T PLN03226         97 PEK--WGVNVQPLSGSPANFAVYTALLQP-------------HDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPY  161 (475)
T ss_pred             cce--eEEecCcCchHHHHHHHHHHhCCC-------------CCEEEECCCCcCcchhhhhhhcccccccceEEEEeeee
Confidence            522  001122468899999999888653             57888733   34443   222222222222  2  23


Q ss_pred             EecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc
Q 018437          182 KLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE  260 (356)
Q Consensus       182 ~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~  260 (356)
                      +.+.+++.+|+++|++++.+ ++++|++. . +.+|...|+++|.++|+++      |++++||+||+.++.+.  +..+
T Consensus       162 ~~~~~~g~iD~d~Le~~l~~~~pklIv~~-~-S~~s~~~D~a~i~~ia~~~------ga~LlvD~AH~~Gli~~--~~~~  231 (475)
T PLN03226        162 RLDESTGLIDYDKLEKKAMLFRPKLIIAG-A-SAYPRDWDYARMRKIADKV------GALLMCDMAHISGLVAA--QEAA  231 (475)
T ss_pred             eecCCCCCcCHHHHHHHHhhcCCeEEEEe-c-CcCCCccCHHHHHHHHHHc------CCEEEEEchhhhCcccC--CCCC
Confidence            44555689999999999874 66666543 3 3468889999999999999      99999999998877631  1111


Q ss_pred             ccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccc---cCC--CCCCCCCccccCCCChhHHHHHHHHHHHh
Q 018437          261 WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH---INY--LGSDQPTFTLNFSKGSSQIIAQYYQFIRL  335 (356)
Q Consensus       261 ~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~tr~~~~~~~~~~~l~~l  335 (356)
                        ....++|.++.++|||+++|.| |+++++++ ..+......   ..|  .-.....+.+.++.+...++++.++++.+
T Consensus       232 --~p~~~~Div~~t~hK~L~GP~G-g~I~~~~~-~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i  307 (475)
T PLN03226        232 --SPFEYCDVVTTTTHKSLRGPRG-GMIFFRKG-PKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQA  307 (475)
T ss_pred             --CCCCCCeEEEecCcccccCCCc-eEEEEchh-hcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHH
Confidence              1134799999999999999999 77777653 221100000   001  00000111234666677789999999999


Q ss_pred             CHHHHHHHHHHHHhccCccc
Q 018437          336 GFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       336 g~~G~~~~~~~~~~~a~~l~  355 (356)
                      -..|++++.++..+++++|+
T Consensus       308 ~~~~~~~~~~~~~~na~~L~  327 (475)
T PLN03226        308 MTPEFKAYQKQVKANAAALA  327 (475)
T ss_pred             hCcCHHHHHHHHHHHHHHHH
Confidence            88888888888888887764

>PLN02187 rooty/superroot1

Probab=99.77  E-value=3.9e-17  Score=160.80  Aligned_cols=213  Identities=13%  Similarity=0.093  Sum_probs=159.6

Q ss_pred             CCcccccccCC----C-ChHHHHHHHHHHhcccC-CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHH
Q 018437           56 PRLNLASFVTT----W-MEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (356)
Q Consensus        56 ~~~~l~~~~~~----~-~~~~v~~~i~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (356)
                      +.++|+.+.|.    + +++.+.+++.+.+..+. ..|....+...+++.+.+++.+.+|.+.+.   ..+++|+|++++
T Consensus        67 ~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~---~~I~it~G~~~a  143 (462)
T PLN02187         67 TILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTP---EDIFLTAGCNQG  143 (462)
T ss_pred             CeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCc---ccEEEeCCHHHH
Confidence            33456665554    2 23577777777765432 345556688889999999888877665422   458999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEE
Q 018437          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAA  208 (356)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~  208 (356)
                      +.+++.++.++             +++|+++.|+|+.+...++..|++++.+++.+ +++.+|+++|+++++++++++++
T Consensus       144 l~~~~~~l~~p-------------Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i  210 (462)
T PLN02187        144 IEIVFESLARP-------------NANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVV  210 (462)
T ss_pred             HHHHHHHhcCC-------------CCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEE
Confidence            99999887643             57999999999999999999999999999853 35899999999999888999999


Q ss_pred             ecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CC-CceEEE-EcCCcC-CCC
Q 018437          209 ILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LP-LVKSIN-VSGHKY-GLV  281 (356)
Q Consensus       209 ~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~-~~Ds~~-~~~hK~-l~~  281 (356)
                      ++|+||||.+-+   +++|.++|+++      ++++++|++|+.+...   +.....+. .. ....++ -|+.|. +..
T Consensus       211 ~nP~NPTG~v~s~e~l~~i~~~a~~~------~i~iI~DE~Y~~l~f~---~~~~~s~~~~~~~~~vi~l~SfSK~f~~p  281 (462)
T PLN02187        211 INPNNPCGNVYSHDHLKKVAETARKL------GIMVISDEVYDRTIFG---DNPFVSMGKFASIVPVLTLAGISKGWVVP  281 (462)
T ss_pred             eCCCCCCCCccCHHHHHHHHHHHHHC------CCEEEEeccccccccC---CCCceeHHHhccCCcEEEEecchhhcCCc
Confidence            999999999855   78899999999      9999999999875541   11111111 11 112444 458897 666


Q ss_pred             CcCeeEEEEeCC
Q 018437          282 YAGVGWVVWRTK  293 (356)
Q Consensus       282 P~g~g~l~~~~~  293 (356)
                      ...+|+++..++
T Consensus       282 GlRiG~~v~~~p  293 (462)
T PLN02187        282 GWKIGWIALNDP  293 (462)
T ss_pred             cceeEEEEecCc
Confidence            789999987543

>PRK07550 hypothetical protein; Provisional

Probab=99.77  E-value=5.4e-17  Score=156.61  Aligned_cols=215  Identities=15%  Similarity=0.051  Sum_probs=156.9

Q ss_pred             CCcccccccCCCC-hHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHH
Q 018437           56 PRLNLASFVTTWM-EPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (356)
Q Consensus        56 ~~~~l~~~~~~~~-~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (356)
                      +.+.|+...+..+ ++.+.+++.+.+.. ....|...++..++++.+.+++.+..|...+.   ..+++|+|+++++.++
T Consensus        30 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~~~al~~~  106 (386)
T PRK07550         30 PLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISP---EQVHITSGCNQAFWAA  106 (386)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCc---ceEEEecCcHHHHHHH
Confidence            3445555554433 45777777765532 23345555688999999999999988875422   3588999999999888


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCC
Q 018437          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGS  212 (356)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (356)
                      +.++..+             +++|+++.++|..+...++..|++++.+++++ +++.+|+++|++++++++++|++++|+
T Consensus       107 ~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~  173 (386)
T PRK07550        107 MVTLAGA-------------GDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPN  173 (386)
T ss_pred             HHHhcCC-------------CCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCC
Confidence            8877542             57899999999999989999999999999974 457899999999999889999999999


Q ss_pred             CcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCc-eEEEEcCCcCCC-CCcCeeE
Q 018437          213 TLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLV-KSINVSGHKYGL-VYAGVGW  287 (356)
Q Consensus       213 ~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~-Ds~~~~~hK~l~-~P~g~g~  287 (356)
                      ||||.+.+   +++|.++|+++      ++++++|++|+.+......+........... ..+..|+.|.++ ....+|+
T Consensus       174 NPtG~~~~~~~~~~i~~~~~~~------~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~  247 (386)
T PRK07550        174 NPTGVVYPPELLHELYDLARRH------GIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGA  247 (386)
T ss_pred             CCCCcccCHHHHHHHHHHHHHc------CeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEe
Confidence            99999865   78999999999      9999999999865321000000011100111 234567999875 4467899


Q ss_pred             EEEeC
Q 018437          288 VVWRT  292 (356)
Q Consensus       288 l~~~~  292 (356)
                      ++..+
T Consensus       248 i~~~~  252 (386)
T PRK07550        248 VVASP  252 (386)
T ss_pred             eecCH
Confidence            98743

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.77  E-value=1.7e-18  Score=165.04  Aligned_cols=218  Identities=13%  Similarity=0.037  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCC
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV  176 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~  176 (356)
                      -.+..+.+|++||.+.      .-.++.|+|.+|..+++++.++             +++|+++...|-|+..++.+.|+
T Consensus        68 I~eAe~~aA~~fGAd~------t~flvnGsT~g~~a~i~a~~~~-------------gd~VLv~RN~HkSv~~alil~ga  128 (417)
T PF01276_consen   68 IKEAEELAARAFGADK------TFFLVNGSTSGNQAMIMALCRP-------------GDKVLVDRNCHKSVYNALILSGA  128 (417)
T ss_dssp             HHHHHHHHHHHHTESE------EEEESSHHHHHHHHHHHHHTTT-------------TCEEEEETT--HHHHHHHHHHTE
T ss_pred             HHHHHHHHHHhcCCCe------EEEEecCchHHHHHHHHHhcCC-------------CCEEEEcCCcHHHHHHHHHHcCC
Confidence            3466677999999985      2577888899999999988764             68999999999999999999999


Q ss_pred             eeEEEEecCC----ccccCH-----HHHHHHHhhC--ce---EEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEE
Q 018437          177 ELKEVKLEEG----YYVMNP-----VKAVELVDEN--TI---CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH  242 (356)
Q Consensus       177 ~v~~v~~~~~----~~~~d~-----~~L~~~i~~~--~~---~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~  242 (356)
                      .+++++...+    -+.+++     +.|+++|++.  .+   +|++++||.. |.+.|+++|+++|+++      +++++
T Consensus       129 ~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~-Gv~~di~~I~~~~h~~------~~~ll  201 (417)
T PF01276_consen  129 IPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYY-GVCYDIKEIAEICHKH------GIPLL  201 (417)
T ss_dssp             EEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TT-SEEE-HHHHHHHHCCT------ECEEE
T ss_pred             eEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCC-eEEECHHHHHHHhccc------CCEEE
Confidence            9999988522    135566     9999999863  23   4999999887 9999999999999999      99999


Q ss_pred             EecccccccccccCCCCcccccCCCce-------EEEEcCCcCCCCCcCeeEEEEeCCC-CCccccccccCCCCCCCCCc
Q 018437          243 VDAASGGFIAPFLYPDLEWDFRLPLVK-------SINVSGHKYGLVYAGVGWVVWRTKD-DLPDELVFHINYLGSDQPTF  314 (356)
Q Consensus       243 vD~a~~~~~~~~~~~~~~~~~~~~~~D-------s~~~~~hK~l~~P~g~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~  314 (356)
                      ||+|+|+... | .+- +.+.-..++|       .++-|.||.+.+-.+++++.+++.. ...+.+.......+.     
T Consensus       202 vDEAhGah~~-F-~~l-p~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~T-----  273 (417)
T PF01276_consen  202 VDEAHGAHFG-F-HPL-PRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQT-----  273 (417)
T ss_dssp             EE-TT-TTGG-C-SGG-GTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS------
T ss_pred             EEcccccccc-C-CCC-ccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcC-----
Confidence            9999998654 2 221 2222235788       9999999999999999999999875 222222111111211     


Q ss_pred             cccCCCChhHHHHHHHHHHHh-CHHHHHHHHHHHHhccC
Q 018437          315 TLNFSKGSSQIIAQYYQFIRL-GFEEITFTFISSLKVCP  352 (356)
Q Consensus       315 ~~~~tr~~~~~~~~~~~l~~l-g~~G~~~~~~~~~~~a~  352 (356)
                         -|++....+++-.+...+ +.+| ++++++.++.++
T Consensus       274 ---TSPSY~lmASlD~a~~~m~~~~G-~~l~~~~i~~a~  308 (417)
T PF01276_consen  274 ---TSPSYPLMASLDVARAQMEEEEG-RELLEEAIELAE  308 (417)
T ss_dssp             ---SS--HHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHH
T ss_pred             ---CChHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHH
Confidence               355666677777777777 5555 334444444443

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.77  E-value=5.3e-17  Score=157.06  Aligned_cols=217  Identities=14%  Similarity=0.063  Sum_probs=156.1

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhccc---CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (356)
                      ++|..+.+.. +++.+.+++..+++..   ...|....+...+++.+.+++.+.++...+   ...+++|+|+++++..+
T Consensus        36 ~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~---~~~i~~t~G~~~al~~~  112 (394)
T PRK06836         36 FDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLT---ADHIVMTCGAAGALNVA  112 (394)
T ss_pred             EEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCC---cCcEEEeCChHHHHHHH
Confidence            4444444443 3467888887766532   233444567788888888888877665431   13488999999999988


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      +.++..+             ++.|++++++|..+...++..|++++.+|++++++.+|+++|++++++++++|++++|+|
T Consensus       113 ~~~l~~~-------------gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~N  179 (394)
T PRK06836        113 LKAILNP-------------GDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNN  179 (394)
T ss_pred             HHHhcCC-------------CCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCC
Confidence            8876432             578999999999999999999999999999875589999999999998999999999999


Q ss_pred             cccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEE
Q 018437          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVV  289 (356)
Q Consensus       214 ~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~  289 (356)
                      |||.+.|   +++|.++|++..+++++++++++|++|..+...  ............-..+..|..|.++ ....+|+++
T Consensus       180 PtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~  257 (394)
T PRK06836        180 PTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYD--GAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIA  257 (394)
T ss_pred             CCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccC--CCCCCChHHccCcEEEEecchhhccCcceeeEEEe
Confidence            9999866   566777788832233339999999999875431  1011111111122455667999875 456799998


Q ss_pred             EeC
Q 018437          290 WRT  292 (356)
Q Consensus       290 ~~~  292 (356)
                      ..+
T Consensus       258 ~~~  260 (394)
T PRK06836        258 VNP  260 (394)
T ss_pred             cCH
Confidence            753

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.77  E-value=2.2e-17  Score=160.75  Aligned_cols=157  Identities=18%  Similarity=0.082  Sum_probs=124.3

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~  170 (356)
                      |...++|    +.++++.|.+.       .++|++|++|+.+++.++..+             +++||++...|.+....
T Consensus        64 p~~~~le----~~lA~l~g~~~-------av~~sSGt~Al~~al~~ll~~-------------Gd~Vi~~~~~y~~t~~~  119 (433)
T PRK08134         64 PTVAVLE----ERVAALEGGVG-------AIATASGQAALHLAIATLMGA-------------GSHIVASSALYGGSHNL  119 (433)
T ss_pred             hHHHHHH----HHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEeCCccHHHHHH
Confidence            4444555    45899999864       689999999999998876332             57999999998765444


Q ss_pred             H----HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          171 A----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       171 ~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                      .    ...|+++++++++      |+++|+++|+++|++|++.+++||+|.+.|+++|+++|+++      |+++++|++
T Consensus       120 ~~~~l~~~Gi~v~~vd~~------d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~------gi~livD~t  187 (433)
T PRK08134        120 LHYTLRRFGIETTFVKPG------DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEA------GVPLLVDST  187 (433)
T ss_pred             HHHHHhhCCeEEEEECCC------CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHc------CCEEEEECC
Confidence            3    4479999998864      78999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC-eeEEEEe
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWR  291 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l~~~  291 (356)
                      ++.+..  .     ..+ ..++|.++.|.|||++++.. .|.+++.
T Consensus       188 ~a~~~~--~-----~pl-~~GaD~vv~S~tK~l~g~g~~~gG~v~~  225 (433)
T PRK08134        188 FTTPYL--L-----RPF-EHGADLVYHSATKFLGGHGTAIGGVLVD  225 (433)
T ss_pred             Cccccc--C-----Cch-hcCCCEEEeccccccCCCCCceEEEEEe
Confidence            976443  1     111 24899999999999865532 4445443

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.77  E-value=7e-17  Score=155.62  Aligned_cols=210  Identities=13%  Similarity=-0.003  Sum_probs=154.3

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      +.|+.+.+.. +++.+.+++.+.+... ...|....+..++++++.+++++.+|.+.+.  ...+++|+|+++++..++.
T Consensus        32 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~--~~~vi~t~G~~~~l~~~~~  109 (383)
T TIGR03540        32 ISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDP--ETEVLSLIGSKEGIAHIPL  109 (383)
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC--CCeEEECCCcHHHHHHHHH
Confidence            4555555553 3467788887765432 2345445577889999999999888886421  1236788999999999888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      ++.++             ++.|+++.|+|..+...++.+|++++.+|++++ ++.+|+++|++++.+++++|++++|+||
T Consensus       110 ~~~~~-------------gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NP  176 (383)
T TIGR03540       110 AFVNP-------------GDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNP  176 (383)
T ss_pred             HhCCC-------------CCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCC
Confidence            76542             578999999999999999999999999999743 4778999999999888999999999999


Q ss_pred             ccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C---CCceEEEEcCCcCCC-CCcCee
Q 018437          215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L---PLVKSINVSGHKYGL-VYAGVG  286 (356)
Q Consensus       215 tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~---~~~Ds~~~~~hK~l~-~P~g~g  286 (356)
                      ||.+-+   +++|.++|+++      ++++++|++|+.+..+   +.....+. .   ........++.|.++ ....+|
T Consensus       177 tG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~l~~~---~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG  247 (383)
T TIGR03540       177 TGAVAPLKFFKELVEFAKEY------NIIVCHDNAYSEITFD---GYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIG  247 (383)
T ss_pred             cCccCCHHHHHHHHHHHHHc------CEEEEEecchhhhccC---CCCCcCcccCCCcccCEEEEEecccccCCccceee
Confidence            999976   68899999999      9999999999865431   11111111 1   112344456779873 334589


Q ss_pred             EEEEe
Q 018437          287 WVVWR  291 (356)
Q Consensus       287 ~l~~~  291 (356)
                      +++..
T Consensus       248 ~~i~~  252 (383)
T TIGR03540       248 MAVGN  252 (383)
T ss_pred             EEeCC
Confidence            98753

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.77  E-value=5e-17  Score=157.85  Aligned_cols=214  Identities=11%  Similarity=0.030  Sum_probs=156.9

Q ss_pred             CCCCcccccccCCC-ChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCC-CCCCCCCCeEEeCChhHHH
Q 018437           54 GNPRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        54 ~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~Ggt~a~  130 (356)
                      ++..++|..+.+.. +++.+.+++...+... ...|. ..+...+++.+.+++.+.+|++ .+.  ..++++|+|+++++
T Consensus        43 ~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~--~~~I~it~Gs~~al  119 (410)
T PRK06290         43 DMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDP--VTEVIHSIGSKPAL  119 (410)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCC--cceEEEccCHHHHH
Confidence            33445666666554 3456777776554322 22233 3678899999999998888865 321  12489999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEe
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      ..++.++.++             ++.|+++.|+|..+...++..|++++.+|++++ ++.+|+++|++++.+++++|+++
T Consensus       120 ~~~~~~~~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~  186 (410)
T PRK06290        120 AMLPSCFINP-------------GDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLN  186 (410)
T ss_pred             HHHHHHhCCC-------------CCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEE
Confidence            8888877543             578999999999999999999999999999753 47889999999998889999999


Q ss_pred             cCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCC-CCCcC
Q 018437          210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYG-LVYAG  284 (356)
Q Consensus       210 ~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l-~~P~g  284 (356)
                      +|+||||.+-+   +++|.++|+++      ++++++|++|+.+...- .+..-..+. ....+.+.-|..|.+ .....
T Consensus       187 nP~NPTG~v~s~e~l~~l~~la~~~------~~~iI~DEaY~~~~~~~-~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlR  259 (410)
T PRK06290        187 YPNNPTGAVATKEFYEEVVDFAKEN------NIIVVQDAAYAALTFDG-KPLSFLSVPGAKEVGVEIHSLSKAYNMTGWR  259 (410)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHc------CeEEEEecchhhceeCC-CCcChhcCCCccccEEEEeechhhcCCchhh
Confidence            99999999966   57888889999      99999999998754310 000001111 123456677789987 35567


Q ss_pred             eeEEEE
Q 018437          285 VGWVVW  290 (356)
Q Consensus       285 ~g~l~~  290 (356)
                      +|+++.
T Consensus       260 iG~ii~  265 (410)
T PRK06290        260 LAFVVG  265 (410)
T ss_pred             eEeEEe
Confidence            899875

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.77  E-value=4.4e-17  Score=157.75  Aligned_cols=217  Identities=13%  Similarity=0.008  Sum_probs=158.0

Q ss_pred             CCCCcccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCC-CCCCCCCCeEEeCChhHHHH
Q 018437           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAIM  131 (356)
Q Consensus        54 ~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~Ggt~a~~  131 (356)
                      +.+.++|..+.++. +++.+.+++.+.+. ....|....+..++++.+.+++.+.+|++ .+.  ...+++|+|+++++.
T Consensus        28 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~--~~~i~it~G~~~al~  104 (396)
T PRK09147         28 DLPPISLSIGEPKHPTPAFIKDALAANLD-GLASYPTTAGLPALREAIAAWLERRYGLPALDP--ATQVLPVNGSREALF  104 (396)
T ss_pred             CCCeEecCCCCCCCCCCHHHHHHHHHHhh-hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCc--cceEEECCChHHHHH
Confidence            33445555555554 35677888776664 33445555677889999999999888865 321  124788999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEec
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      .++.++.++          +.+++.|+++.|+|..+..+++..|++++.||+++ +++.+|+++|++.+.++++++++++
T Consensus       105 ~~~~~l~~~----------~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~n  174 (396)
T PRK09147        105 AFAQTVIDR----------DGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCS  174 (396)
T ss_pred             HHHHHHcCC----------CCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcC
Confidence            888877541          12246899999999999999999999999999974 3478999999998888899999999


Q ss_pred             CCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-cc---CCC-----ceEEEEcCCc-
Q 018437          211 GSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR---LPL-----VKSINVSGHK-  277 (356)
Q Consensus       211 ~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~---~~~-----~Ds~~~~~hK-  277 (356)
                      |+||||.+-   .+++|.++|+++      ++|+++|++|+.+...  ....... +.   ..+     --.+..|+.| 
T Consensus       175 P~NPTG~~~s~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  246 (396)
T PRK09147        175 PGNPTGAVLPLDDWKKLFALSDRY------GFVIASDECYSEIYFD--EAAPPLGLLEAAAELGRDDFKRLVVFHSLSKR  246 (396)
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHc------CeEEEeeccccccccC--CCCCCchhhhhccccCccccccEEEEeccccc
Confidence            999999985   577888889999      9999999999875431  1001110 00   001     1145567899 


Q ss_pred             CCCCCcCeeEEEEe
Q 018437          278 YGLVYAGVGWVVWR  291 (356)
Q Consensus       278 ~l~~P~g~g~l~~~  291 (356)
                      +++....+|+++..
T Consensus       247 ~~~~GlRiG~~~~~  260 (396)
T PRK09147        247 SNVPGLRSGFVAGD  260 (396)
T ss_pred             cCCccceeeeecCC
Confidence            45666889998754

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.77  E-value=3.3e-18  Score=163.17  Aligned_cols=255  Identities=14%  Similarity=0.010  Sum_probs=172.1

Q ss_pred             cccCCCChHHHHHHHHHHhc----ccCCCcc---cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEe-CChhHHHHHH
Q 018437           62 SFVTTWMEPECDKLVMASIN----KNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT-VGSSEAIMLA  133 (356)
Q Consensus        62 ~~~~~~~~~~v~~~i~~~~~----~~~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t-~Ggt~a~~~a  133 (356)
                      ...|+..++.+.+++...+.    ...+.+.   .++.+.++.+++++.+++++|.+.+    ...+++ .+||.++-.+
T Consensus         8 ~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~----~~v~~~~gsgt~~~Ea~   83 (360)
T PRK05355          8 SAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDN----YKVLFLQGGASLQFAMV   83 (360)
T ss_pred             cCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----cEEEEEcCCchHHHHHH
Confidence            33455667889998877652    2222332   2445668899999999999998431    235555 5566666666


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHH-HHhhCceEEEEecCC
Q 018437          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVE-LVDENTICVAAILGS  212 (356)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~-~i~~~~~~v~~~~~~  212 (356)
                      ++.+..+        |  .+...|+....+| .+.+.++..|.. ..++.++..+..+..++++ ++++++++|.+++..
T Consensus        84 ~~nl~~~--------g--~~~l~i~~G~fg~-r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~e  151 (360)
T PRK05355         84 PMNLLGG--------G--KKADYVDTGSWSK-KAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNE  151 (360)
T ss_pred             HHhcCCC--------C--CeEEEEECCHHHH-HHHHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCC
Confidence            6665432        1  0011333333444 356778888865 6677664225555555555 787789999999999


Q ss_pred             CcccccC-CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          213 TLTGEFE-DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       213 ~~tG~~~-~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      |.||+.. |+++|      +      +++++||++++.+..|       ++++  ..|.+++++||++ +|+|.|+++++
T Consensus       152 TstGv~~~~i~~i------~------g~l~vVDavss~g~~~-------idv~--~~d~~~~ssqK~l-gP~Glg~l~~s  209 (360)
T PRK05355        152 TIDGTEFHELPDT------G------DVPLVADMSSDILSRP-------IDVS--KFGLIYAGAQKNI-GPAGLTIVIVR  209 (360)
T ss_pred             CcceEecCccccc------C------CCcEEEEcCccccCcc-------CCHH--HccEEEEeccccc-cCCceEEEEEC
Confidence            9999997 77776      7      9999999999876653       4443  3579999999987 59999999998


Q ss_pred             CCCCCccccccccCCCCCC--CCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          292 TKDDLPDELVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                      ++.+. ..-.....|....  .......+|++...++++.++|+.+-.+ |++++.+++.+++++|.
T Consensus       210 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~  275 (360)
T PRK05355        210 EDLLG-RALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLY  275 (360)
T ss_pred             HHHHh-hcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            75331 1100001111100  0111234899999999999999999999 89999999999998874

>PRK07682 hypothetical protein; Validated

Probab=99.77  E-value=2.2e-17  Score=158.85  Aligned_cols=211  Identities=11%  Similarity=0.056  Sum_probs=156.6

Q ss_pred             cccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|+.+.+... ++.+.+++.+.+......|...++...+++++.+++.+.+|.+.+.  ...+++|+|+++|+.+++.+
T Consensus        23 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~~i~~t~G~~~al~~~~~~  100 (378)
T PRK07682         23 ISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDP--NDEIIVTVGASQALDVAMRA  100 (378)
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCChHHHHHHHHHH
Confidence            44444444432 3456777766665433445556788999999999999988875421  12489999999999998887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      +.++             ++.|++++++|+.+...++..|.+++.++++. +++.+|+++|++++.+++++|++++|+|||
T Consensus       101 l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPt  167 (378)
T PRK07682        101 IINP-------------GDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPT  167 (378)
T ss_pred             hCCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCc
Confidence            7542             57899999999999999999999999999863 348999999999998889999999999999


Q ss_pred             cccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-cccc-CCCceEEEEcCCcCCC-CCcCeeEEE
Q 018437          216 GEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAGVGWVV  289 (356)
Q Consensus       216 G~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~  289 (356)
                      |.+-   ++++|.++|+++      ++++++|++|+.+...  .+... ..+. ...-..+..++.|.++ ....+|+++
T Consensus       168 G~~~s~~~~~~l~~~~~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~  239 (378)
T PRK07682        168 GAVLNKSELEEIAVIVEKH------DLIVLSDEIYAELTYD--EAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIA  239 (378)
T ss_pred             CcCcCHHHHHHHHHHHHHc------CcEEEEehhhhhcccC--CCCCChhhcccccCCEEEEecCcccccChhhhhhhhh
Confidence            9985   488999999999      9999999999876541  10000 1111 1122455667899875 345689998


Q ss_pred             Ee
Q 018437          290 WR  291 (356)
Q Consensus       290 ~~  291 (356)
                      ..
T Consensus       240 ~~  241 (378)
T PRK07682        240 AP  241 (378)
T ss_pred             cC
Confidence            74

>PRK07683 aminotransferase A; Validated

Probab=99.77  E-value=5e-17  Score=156.90  Aligned_cols=211  Identities=15%  Similarity=0.143  Sum_probs=158.7

Q ss_pred             cccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|..+.+..+ ++.+.+++.+.+..+...|...++..++++++.+++.+.+|++.+.  ...+++|+|+++|+.+++.+
T Consensus        31 i~l~~~~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~--~~~I~~t~G~~~al~~~~~~  108 (387)
T PRK07683         31 ISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSP--ESEIIVTIGASEAIDIAFRT  108 (387)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCChHHHHHHHHHH
Confidence            34555544433 4677888888776555555556688899999999998877875321  11489999999999988877


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      +..+             +++|+++.++|..+..+++..|++++.++++++++.+|++++++.+.++++++++++|+||||
T Consensus       109 l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG  175 (387)
T PRK07683        109 ILEP-------------GTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTG  175 (387)
T ss_pred             hCCC-------------CCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCC
Confidence            6432             578999999999999999999999999999865688899999999988899999999999999


Q ss_pred             ccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-cccc-CCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          217 EFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       217 ~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      .+-   ++++|.++|+++      ++++++|++|..+...  .+... ..+. ...-..+..+..|.++ ....+|+++.
T Consensus       176 ~~~s~~~~~~l~~~~~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~  247 (387)
T PRK07683        176 VTLSKEELQDIADVLKDK------NIFVLSDEIYSELVYE--QPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFA  247 (387)
T ss_pred             cCCCHHHHHHHHHHHHHc------CeEEEEecccccceeC--CCcCChhhccCCcCCeEEEeeccccccCccceeEEEEc
Confidence            984   478899999999      9999999999875431  11111 1110 1122355567899886 5567899886


Q ss_pred             e
Q 018437          291 R  291 (356)
Q Consensus       291 ~  291 (356)
                      .
T Consensus       248 ~  248 (387)
T PRK07683        248 P  248 (387)
T ss_pred             C
Confidence            4

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.77  E-value=3.1e-17  Score=158.95  Aligned_cols=193  Identities=15%  Similarity=0.102  Sum_probs=141.2

Q ss_pred             HHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCC
Q 018437           71 ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK  150 (356)
Q Consensus        71 ~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~  150 (356)
                      .+.+.+.+++..+...|..+++..+||++    +++++|.+.       +++|+||++|+..++.++.++          
T Consensus        33 ams~~~~~a~~~gd~~Y~~~~g~~~Leea----ia~~~g~~~-------vv~t~~Gt~Al~la~~al~~p----------   91 (431)
T cd00617          33 AMSDYQWAAMMLGDEAYAGSKSFYDLEDA----VQDLFGFKH-------IIPTHQGRGAENILFSILLKP----------   91 (431)
T ss_pred             HHHHHHHHHHHhCCCccCCCCCHHHHHHH----HHHHHCCCe-------EEEcCCHHHHHHHHHHHhCCC----------
Confidence            44444445544444457778888888877    677778864       799999999999999887543          


Q ss_pred             CCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC---------ccccCHHHHHHHHhhC----ceEEEEecCCCcc-c
Q 018437          151 PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDEN----TICVAAILGSTLT-G  216 (356)
Q Consensus       151 ~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~~----~~~v~~~~~~~~t-G  216 (356)
                         +++| ++.+.+.++...+.+.|+.++.+++++.         +|.+|+++|+++|+++    +++|+++.++|++ |
T Consensus        92 ---GD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG  167 (431)
T cd00617          92 ---GRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGG  167 (431)
T ss_pred             ---CCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCC
Confidence               4555 6777777888889999999999999742         2559999999999865    7889999999998 7


Q ss_pred             ccC---CHHHHHHHHHHhhhccCCCCcEEEeccccccccccc-------CCCCccccc---CCCceEEEEcCCcCCCCCc
Q 018437          217 EFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-------YPDLEWDFR---LPLVKSINVSGHKYGLVYA  283 (356)
Q Consensus       217 ~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~-------~~~~~~~~~---~~~~Ds~~~~~hK~l~~P~  283 (356)
                      .+-   ++++|.++|++|      |+++|.|+|....-.-|.       ......++.   ....|++++++||-+++|.
T Consensus       168 ~~~s~~~l~~i~eia~~~------gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~  241 (431)
T cd00617         168 QPVSMANLREVRELAHKY------GIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI  241 (431)
T ss_pred             ccCCHHHHHHHHHHHHHc------CCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc
Confidence            774   567889999999      999999999543211011       011011111   2368999999999988887


Q ss_pred             CeeEEEEeCCCC
Q 018437          284 GVGWVVWRTKDD  295 (356)
Q Consensus       284 g~g~l~~~~~~~  295 (356)
                      | |+++.+++++
T Consensus       242 G-G~i~~~d~~l  252 (431)
T cd00617         242 G-GFLALRDDEL  252 (431)
T ss_pred             c-eEEEeCcHHH
Confidence            4 6777766434

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PLN02368 alanine transaminase

Probab=99.77  E-value=3.6e-17  Score=158.32  Aligned_cols=201  Identities=11%  Similarity=-0.010  Sum_probs=147.8

Q ss_pred             ChHHHHHHHHHHh--cccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHH-HHHHHH
Q 018437           68 MEPECDKLVMASI--NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK-RKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~--~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~-~~~~~~  144 (356)
                      +++.+.+++....  ......|....+..++++++.+++.+.+|++.+.   ..+++|+|+++++..++.++. ++    
T Consensus        82 p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~---~~I~it~Ga~~al~~~~~~l~~~p----  154 (407)
T PLN02368         82 PADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDP---ELIFLTDGASKGVMQILNAVIRGE----  154 (407)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEcccHHHHHHHHHHHHcCCC----
Confidence            3445566654322  1123456666688899999999999888865422   358999999999999888775 32    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhh------CceEEEEecCCCcccc
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGE  217 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~  217 (356)
                               +++|+++.|+|+.+...++..|++++.||+++ ++|.+|+++|++++++      +++++++++|+||||.
T Consensus       155 ---------Gd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~  225 (407)
T PLN02368        155 ---------KDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQ  225 (407)
T ss_pred             ---------CCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCc
Confidence                     57899999999999999999999999999975 3589999999999974      6889999999999999


Q ss_pred             cC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-ccc--cC-----CCceEEE-EcCCcCC--CCCc
Q 018437          218 FE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF--RL-----PLVKSIN-VSGHKYG--LVYA  283 (356)
Q Consensus       218 ~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~--~~-----~~~Ds~~-~~~hK~l--~~P~  283 (356)
                      +-   .+++|.++|+++      ++++++|++|+.+..+--.+... ..+  .+     .....++ -++.|.+  ...+
T Consensus       226 v~s~e~l~~l~~~a~~~------~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~Gl  299 (407)
T PLN02368        226 CLSEANLREILKFCYQE------RLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQ  299 (407)
T ss_pred             cCCHHHHHHHHHHHHHc------CCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCcc
Confidence            84   467788889999      99999999998865410000000 000  00     0112343 4589975  3778


Q ss_pred             CeeEEEE
Q 018437          284 GVGWVVW  290 (356)
Q Consensus       284 g~g~l~~  290 (356)
                      .+|++++
T Consensus       300 RiGy~i~  306 (407)
T PLN02368        300 RGGYFEM  306 (407)
T ss_pred             ceEEEEE
Confidence            9999986

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.77  E-value=1.6e-17  Score=157.88  Aligned_cols=161  Identities=15%  Similarity=0.089  Sum_probs=123.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCee
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v  178 (356)
                      ++++.+++++|.+.       .+++++||+|+..++.+++.            ..+++|+++.++|.++..++...|+++
T Consensus        22 ~~~~~la~~~~~~~-------~~~~~sgt~al~~~l~~l~~------------~~gd~vl~~~~~~~~~~~~~~~~g~~~   82 (352)
T cd00616          22 EFEKAFAEYLGVKY-------AVAVSSGTAALHLALRALGI------------GPGDEVIVPSFTFVATANAILLLGATP   82 (352)
T ss_pred             HHHHHHHHHhCCCe-------EEEECCHHHHHHHHHHHcCC------------CCCCEEEeCCcchHHHHHHHHHcCCeE
Confidence            44455888888753       77888999999999887631            115789999999999999999999999


Q ss_pred             EEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCC
Q 018437          179 KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD  258 (356)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~  258 (356)
                      +.++++++++.+|+++|++++++++++|++++   ++|.+.|+++|.++|+++      ++++++|++++.+...  ...
T Consensus        83 ~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~------~i~li~D~a~~~g~~~--~~~  151 (352)
T cd00616          83 VFVDIDPDTYNIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRH------GLPVIEDAAQALGATY--KGR  151 (352)
T ss_pred             EEEecCCCcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHc------CCeEEEECCCCCCCeE--CCE
Confidence            99999874589999999999988898888764   689999999999999999      9999999999754431  110


Q ss_pred             CcccccCCCceEEEEc--CCcCCCCCcCeeEEEEeCCC
Q 018437          259 LEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTKD  294 (356)
Q Consensus       259 ~~~~~~~~~~Ds~~~~--~hK~l~~P~g~g~l~~~~~~  294 (356)
                         .+. ...|..++|  .|||+.+|.| |+++.++++
T Consensus       152 ---~~~-~~~d~~~~S~~~~K~~~~~~g-g~~~~~~~~  184 (352)
T cd00616         152 ---KVG-TFGDAGAFSFHPTKNLTTGEG-GAVVTNDEE  184 (352)
T ss_pred             ---Ecc-cCcceeEEcCCCCCCCcccCc-eEEEECCHH
Confidence               011 123555555  5699854443 666666543

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.77  E-value=5.4e-17  Score=152.77  Aligned_cols=188  Identities=14%  Similarity=0.072  Sum_probs=153.0

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcC
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (356)
                      ....+++.+.+..++...  ++...++|++    +++++|+..       .+.+++||.|+.++++++.-          
T Consensus        15 ~~e~~~v~~vl~sg~i~~--G~~v~~FE~~----~ae~~G~k~-------ava~~sgT~AL~laL~al~i----------   71 (374)
T COG0399          15 EEELAAVQEVLKSGWLTG--GPFVRRFEQA----FAEYLGVKY-------AVAVSSGTAALHLALLALAI----------   71 (374)
T ss_pred             hHHHHHHHHHHHcCCeec--ChHHHHHHHH----HHHHhCCCe-------EEEecChHHHHHHHHHhcCC----------
Confidence            566777888887666554  6677778775    899999986       78999999999999996631          


Q ss_pred             CCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHH
Q 018437          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT  229 (356)
Q Consensus       150 ~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~  229 (356)
                        ..+++||+|+.++.+..+++-+.|+++++|++|++++.||++.||++|+++|++|+   |....|...|+++|.++|+
T Consensus        72 --g~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIi---pVhl~G~~~dm~~i~~la~  146 (374)
T COG0399          72 --GPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAII---PVHLAGQPCDMDAIMALAK  146 (374)
T ss_pred             --CCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEE---EehhccCCCCHHHHHHHHH
Confidence              12579999999999999999999999999999988899999999999999999998   5566799999999999999


Q ss_pred             HhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      +|      |++++.|+|++.+..  ...+..-.  ...+-++++-+.|.+.+. .-|+++.+++++.
T Consensus       147 ~~------~l~vIEDaAqa~Ga~--y~gk~vGt--~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela  202 (374)
T COG0399         147 RH------GLPVIEDAAQAHGAT--YKGKKVGS--FGDIGAFSFHATKNLTTG-EGGAVVTNDEELA  202 (374)
T ss_pred             Hc------CCeEEEEcchhccCe--ecCccccc--ccceEEEEecCCCCcccc-CceEEEeCCHHHH
Confidence            99      999999999987654  23222122  335778888899998666 4588888776544

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.76  E-value=7.5e-17  Score=155.86  Aligned_cols=210  Identities=17%  Similarity=0.128  Sum_probs=154.4

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      +++..+.+.. +++.+.+++.+.+......|....+..++++.+.+++.+.+|.+.+.  ...+++|+|+++++.+++.+
T Consensus        33 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~--~~~i~it~G~~~al~~~~~~  110 (391)
T PRK07309         33 LKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAP--ENEILVTIGATEALSASLTA  110 (391)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCChHHHHHHHHHH
Confidence            3444444443 34567777776665433345455678899999999998888875321  13588999999999998887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh---CceEEEEecCCC
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGST  213 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~  213 (356)
                      +..+             +++|+++.++|..+...++..|++++.+|++++++.+|++.|++++++   ++++|++++|+|
T Consensus       111 ~~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~N  177 (391)
T PRK07309        111 ILEP-------------GDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPAN  177 (391)
T ss_pred             hcCC-------------CCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCC
Confidence            6432             578999999999999999999999999998765578999999999864   578999999999


Q ss_pred             cccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEcCCcCCC-CCcCeeE
Q 018437          214 LTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHKYGL-VYAGVGW  287 (356)
Q Consensus       214 ~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK~l~-~P~g~g~  287 (356)
                      |||.+-   ++++|.++|++|      ++++++|++|+.+...   +.....+.  ...-..+.-|..|.++ ....+|+
T Consensus       178 PtG~~~s~~~~~~l~~~~~~~------~~~ii~D~~y~~~~~~---~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~  248 (391)
T PRK07309        178 PTGVTYSREQIKALADVLKKY------DIFVISDEVYSELTYT---GEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGL  248 (391)
T ss_pred             CCCcCcCHHHHHHHHHHHHHc------CcEEEEEccccceeeC---CCCCCCHHHhccCCEEEEecChhhccCccceeEE
Confidence            999974   488899999999      9999999999875431   11111111  1112345567999864 4456888


Q ss_pred             EEEe
Q 018437          288 VVWR  291 (356)
Q Consensus       288 l~~~  291 (356)
                      ++..
T Consensus       249 ~v~~  252 (391)
T PRK07309        249 IFAP  252 (391)
T ss_pred             EEeC
Confidence            8864

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.76  E-value=7.6e-18  Score=159.95  Aligned_cols=244  Identities=15%  Similarity=0.043  Sum_probs=169.9

Q ss_pred             hHHHHHHHHHHhcc----cCCCccc---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCC-hhHHHHHHHHHHHHH
Q 018437           69 EPECDKLVMASINK----NYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVG-SSEAIMLAGLAFKRK  140 (356)
Q Consensus        69 ~~~v~~~i~~~~~~----~~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~G-gt~a~~~al~~~~~~  140 (356)
                      |..+.+++.+++..    ..+.+..   ++.+.++.+++++.+++++|.+.+    ..+++++| ||+|+..++..+..+
T Consensus         4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~----~~v~~~~gsgT~a~ea~~~nl~~~   79 (349)
T TIGR01364         4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDN----YEVLFLQGGATGQFAAVPLNLLAE   79 (349)
T ss_pred             CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCCchHHHHHHHHhcCCC
Confidence            45677777766652    2222322   345668889999999999998531    34677766 999999998876432


Q ss_pred             HHHHHHhcCCCCCCCeEEe---cCCCcchHHHHHHhhCCeeEEEEecCC---ccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          141 WQQKRKEQGKPYDKPNIVT---GANVQVCWEKFARYFEVELKEVKLEEG---YYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~---s~~~h~s~~~~~~~~G~~v~~v~~~~~---~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                                   ++++++   ...+| .+.+.++..|+ +..+..++.   .-.+|+++++  +++++++|.+++..|.
T Consensus        80 -------------~~~~l~i~~G~fg~-r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETs  142 (349)
T TIGR01364        80 -------------GKVADYIVTGAWSK-KAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETI  142 (349)
T ss_pred             -------------CCeEEEEECCHHHH-HHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCc
Confidence                         233332   23333 35788888899 888886531   1245666655  3467899999999999


Q ss_pred             ccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCC
Q 018437          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (356)
Q Consensus       215 tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~  294 (356)
                      ||+..|     ++++.+      +++++||++++.+..|       .+++  ..|.+++++||++ +|+|.|+++++++.
T Consensus       143 tGv~~~-----~l~~~~------~~l~iVDavss~g~~~-------id~~--~~d~~~~ssqK~l-gP~Glg~l~~s~~~  201 (349)
T TIGR01364       143 HGVEFR-----ELPDVK------NAPLVADMSSNILSRP-------IDVS--KFGLIYAGAQKNI-GPAGLTVVIVRKDL  201 (349)
T ss_pred             ccEecc-----eecccC------CCeEEEEccccccCcc-------CCHH--HccEEEEeccccc-CCCceEEEEECHHH
Confidence            999876     677778      9999999999876663       4443  3579999999987 59999999998753


Q ss_pred             CCccccccccCCCCCC--CCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          295 DLPDELVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       295 ~~~~~~~~~~~~~~~~--~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                      +. ..-.....|....  .......||++...++++..+|+.+-.+ |++++.+++..++++|.
T Consensus       202 ~~-~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~  264 (349)
T TIGR01364       202 LG-RASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLY  264 (349)
T ss_pred             Hh-hcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            21 1100111221111  0112234899999999999999999998 79999999999998874

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.76  E-value=9.2e-17  Score=155.37  Aligned_cols=218  Identities=14%  Similarity=0.004  Sum_probs=157.5

Q ss_pred             CCCCcccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHH
Q 018437           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (356)
Q Consensus        54 ~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (356)
                      +.+.++|..+.++. +++.+.+++.+.+. ....|....+..++++.+.+++.+.+|.+..-.....+++|+|+++++.+
T Consensus        27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~  105 (393)
T TIGR03538        27 SKPPIALSIGEPKHPTPAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFA  105 (393)
T ss_pred             CCCeEEecCCCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHH
Confidence            34445565555553 45678888877654 33445555677889999999998888775210011247889999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEecC
Q 018437          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      ++.++.++           ++...|+++.|+|..+...++..|++++.||++++ ++.+|+++|++++.+++++|++++|
T Consensus       106 ~~~~l~~~-----------gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p  174 (393)
T TIGR03538       106 FAQAVINP-----------GQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSP  174 (393)
T ss_pred             HHHHHcCC-----------CCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCC
Confidence            88887643           11125999999999999999999999999999643 4789999999999888999999999


Q ss_pred             CCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc----cCCC-----ceEEEEcCCc-C
Q 018437          212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF----RLPL-----VKSINVSGHK-Y  278 (356)
Q Consensus       212 ~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~----~~~~-----~Ds~~~~~hK-~  278 (356)
                      +||||.+-+   +++|.++|+++      ++++++|++|..+...  ........    ...+     --.+..|..| |
T Consensus       175 ~NPtG~~~s~~~~~~l~~~a~~~------~~~ii~De~Y~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~  246 (393)
T TIGR03538       175 GNPTGAVLSLDTLKKLIELADQY------GFIIASDECYSELYFD--EGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRS  246 (393)
T ss_pred             CCCcCcccCHHHHHHHHHHHHHC------CEEEEECcchhhcccC--CCCCCcCHHHhcccccccccccEEEEecchhhc
Confidence            999999865   78888999999      9999999999865431  00001000    0001     1145567899 5


Q ss_pred             CCCCcCeeEEEEe
Q 018437          279 GLVYAGVGWVVWR  291 (356)
Q Consensus       279 l~~P~g~g~l~~~  291 (356)
                      +.....+|+++..
T Consensus       247 ~~~GlRvG~~i~~  259 (393)
T TIGR03538       247 NLPGLRSGFVAGD  259 (393)
T ss_pred             CCcccceEEEecC
Confidence            7777899998764

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.76  E-value=8.5e-17  Score=159.49  Aligned_cols=199  Identities=11%  Similarity=0.011  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHhcc---cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHH-HHHHHHH
Q 018437           70 PECDKLVMASINK---NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK-RKWQQKR  145 (356)
Q Consensus        70 ~~v~~~i~~~~~~---~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~-~~~~~~~  145 (356)
                      ..+.+++.+++..   ....|....+..++++++.+++.+..|.+.+.   ..+++|+|+++++.+++.++. ++     
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~---~~I~it~Ga~~al~~~~~~l~~~~-----  162 (481)
T PTZ00377         91 ADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDP---SDIFLTDGASSGIKLLLQLLIGDP-----  162 (481)
T ss_pred             HHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCCh---hhEEEcCCHHHHHHHHHHHhccCC-----
Confidence            3455555555443   23446666788999999999999888876532   458999999999999998875 32     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhh------CceEEEEecCCCccccc
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEF  218 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~  218 (356)
                              +++|+++.|+|+.+...++..|++++.||+++ ++|.+|+++|++++++      ++++|++++|+||||.+
T Consensus       163 --------gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~  234 (481)
T PTZ00377        163 --------SDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQV  234 (481)
T ss_pred             --------CCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcC
Confidence                    57999999999999999999999999999975 3579999999999975      78889999999999999


Q ss_pred             CC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-----cccCC---CceEEEE-cCCcCCC--CCcC
Q 018437          219 ED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-----DFRLP---LVKSINV-SGHKYGL--VYAG  284 (356)
Q Consensus       219 ~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-----~~~~~---~~Ds~~~-~~hK~l~--~P~g  284 (356)
                      .+   +++|+++|+++      ++++++|++|+.+...--.+...+     ++...   ....+++ |..|.++  +.+.
T Consensus       235 ~s~e~~~~i~~~a~~~------~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlR  308 (481)
T PTZ00377        235 LTRDVMEEIIKFCYEK------GIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRR  308 (481)
T ss_pred             CCHHHHHHHHHHHHHC------CCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCc
Confidence            76   88899999999      999999999987543100010000     11100   1123443 6899543  5788


Q ss_pred             eeEEEE
Q 018437          285 VGWVVW  290 (356)
Q Consensus       285 ~g~l~~  290 (356)
                      +|++++
T Consensus       309 iG~~~~  314 (481)
T PTZ00377        309 GGYFEL  314 (481)
T ss_pred             eEEEEE
Confidence            999986

>PRK08068 transaminase; Reviewed

Probab=99.76  E-value=9e-17  Score=155.20  Aligned_cols=210  Identities=10%  Similarity=-0.030  Sum_probs=154.6

Q ss_pred             cccccccCCCC-hHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           58 LNLASFVTTWM-EPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      ++|+.+.+..+ ++.+.+++.+.++.. ...|...++..++++++.+++.+.+|.+.+.  ...+++|+|+++++..++.
T Consensus        35 i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~--~~~i~it~G~~~~l~~~~~  112 (389)
T PRK08068         35 INLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDP--ETEVAILFGGKAGLVELPQ  112 (389)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CccEEEcCCcHHHHHHHHH
Confidence            45655555443 366788887776532 2235455678899999999988877865321  1147899999999988877


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      ++..+             ++.|+++.|+|..+...++..|++++.+|++++ ++.+|++++++++.+++++|++++|+||
T Consensus       113 ~~~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NP  179 (389)
T PRK08068        113 CLMNP-------------GDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNP  179 (389)
T ss_pred             HhCCC-------------CCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCC
Confidence            76442             578999999999999999999999999999753 4789999999999888999999999999


Q ss_pred             ccccCCH---HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc-c---CCCceEEEEcCCcCCC-CCcCee
Q 018437          215 TGEFEDV---KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-R---LPLVKSINVSGHKYGL-VYAGVG  286 (356)
Q Consensus       215 tG~~~~i---~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~---~~~~Ds~~~~~hK~l~-~P~g~g  286 (356)
                      ||.+-+.   ++|.++|+++      ++++++|++|+.+...   ......+ .   ...-..+..+..|.++ ....+|
T Consensus       180 TG~~~s~~~~~~l~~la~~~------~~~ii~Deay~~~~~~---~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG  250 (389)
T PRK08068        180 TGAVATKAFFEETVAFAKKH------NIGVVHDFAYGAIGFD---GQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVA  250 (389)
T ss_pred             CCCcCCHHHHHHHHHHHHHc------CeEEEEehhhhhhccC---CCCCcChhhCCCccCCEEEEecchhccCCccceeE
Confidence            9999665   6778889999      9999999999764321   1111111 1   1112345567889874 556789


Q ss_pred             EEEEe
Q 018437          287 WVVWR  291 (356)
Q Consensus       287 ~l~~~  291 (356)
                      +++..
T Consensus       251 ~~~~~  255 (389)
T PRK08068        251 FAVGN  255 (389)
T ss_pred             eEecC
Confidence            99753

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.76  E-value=1.5e-16  Score=153.52  Aligned_cols=211  Identities=15%  Similarity=0.028  Sum_probs=153.7

Q ss_pred             CcccccccCCC-ChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           57 RLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        57 ~~~l~~~~~~~-~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      .+++..+.+.. +++.+.+++.+.+... ...|....+..++++++.+++.+.+|.+.+.  ...+++|+|+++++..++
T Consensus        33 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~~ii~t~G~~~~i~~~~  110 (385)
T PRK09276         33 VISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDP--ETEVISLIGSKEGIAHIP  110 (385)
T ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCcEEEccCcHHHHHHHH
Confidence            34555555443 3467788887776532 2334444567889999999999888875422  113778899999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      .++.++             +++|++++|+|+.+...++..|++++.+|++. +.+.+|++++++++.+++++|++++|+|
T Consensus       111 ~~~~~~-------------gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~N  177 (385)
T PRK09276        111 LAFVNP-------------GDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNN  177 (385)
T ss_pred             HHhCCC-------------CCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCC
Confidence            877543             57999999999999999999999999999964 3477999999999888899999999999


Q ss_pred             cccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C---CCceEEEEcCCcCCC-CCcCe
Q 018437          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L---PLVKSINVSGHKYGL-VYAGV  285 (356)
Q Consensus       214 ~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~---~~~Ds~~~~~hK~l~-~P~g~  285 (356)
                      |||.+-+   +++|.++|+++      ++++++|++|+.+...   ......+. .   .....+..+..|.++ ....+
T Consensus       178 PtG~~~~~~~~~~l~~~~~~~------~~~ii~De~y~~~~~~---~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi  248 (385)
T PRK09276        178 PTGAVADLEFFEEVVDFAKKY------DIIVCHDAAYSEIAYD---GYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRI  248 (385)
T ss_pred             CCCCCCCHHHHHHHHHHHHHC------CcEEEEecchhheecC---CCCCCChhccCCCcCCEEEEecchhhcCCcchhh
Confidence            9999966   57888999999      9999999999875431   11011111 1   122344566779763 33458


Q ss_pred             eEEEEe
Q 018437          286 GWVVWR  291 (356)
Q Consensus       286 g~l~~~  291 (356)
                      |+++..
T Consensus       249 G~~i~~  254 (385)
T PRK09276        249 GFAVGN  254 (385)
T ss_pred             eeeeCC
Confidence            998753

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.76  E-value=3.7e-17  Score=157.95  Aligned_cols=204  Identities=15%  Similarity=0.004  Sum_probs=144.1

Q ss_pred             CCCCccccccc-CCC-ChHHHHHHHHHHhcccCCCc---ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhH
Q 018437           54 GNPRLNLASFV-TTW-MEPECDKLVMASINKNYVDM---DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (356)
Q Consensus        54 ~~~~~~l~~~~-~~~-~~~~v~~~i~~~~~~~~~~~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (356)
                      |+...++.++. +.. +++.+.+++.+.+..+...+   ....+...+.+++++++++++|.+.      .+++|+| ++
T Consensus        41 g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~------~i~~tsG-~~  113 (397)
T PRK06939         41 GKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTED------AILYSSC-FD  113 (397)
T ss_pred             CCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCc------EEEEcCh-HH
Confidence            33434554433 233 45778888877775432222   2234677888999999999999752      2455555 88


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh------C
Q 018437          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------N  202 (356)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~  202 (356)
                      ++..++.++.++             +++|++++++|+++...++..|++++.++.      +|+++|++.+++      +
T Consensus       114 a~~~~~~~l~~~-------------gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~i~~~~~~~~~  174 (397)
T PRK06939        114 ANGGLFETLLGK-------------EDAIISDALNHASIIDGVRLCKAKRYRYAN------NDMADLEAQLKEAKEAGAR  174 (397)
T ss_pred             HHHHHHHHhCCC-------------CCEEEEEhhhhHHHHHHHHhcCCceEEeCC------CCHHHHHHHHHhhhccCCC
Confidence            888877665432             579999999999999999998988776653      478888888864      6


Q ss_pred             ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-cc-CCCceEEEEcCCcCCC
Q 018437          203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR-LPLVKSINVSGHKYGL  280 (356)
Q Consensus       203 ~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~-~~~~Ds~~~~~hK~l~  280 (356)
                      +++|+..+..+++|.+.++++|.++|+++      ++++++|++|+.+..+. ....... .. ..++|.++.++||+++
T Consensus       175 ~~~v~~~~v~~~~G~~~~~~~l~~la~~~------~~~li~De~~~~g~~~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~  247 (397)
T PRK06939        175 HKLIATDGVFSMDGDIAPLPEICDLADKY------DALVMVDDSHAVGFVGE-NGRGTVEHFGVMDRVDIITGTLGKALG  247 (397)
T ss_pred             CeEEEEecCcCCCCCcCCHHHHHHHHHHh------CCEEEEECcccccCcCC-CCCCHHHHcCCCCCCcEEEEECHHHhC
Confidence            77788777889999999999999999999      99999999996333211 0110111 11 2357888899999986


Q ss_pred             CCcCeeEEEEe
Q 018437          281 VYAGVGWVVWR  291 (356)
Q Consensus       281 ~P~g~g~l~~~  291 (356)
                      ++ ..|+++.+
T Consensus       248 g~-r~G~v~~~  257 (397)
T PRK06939        248 GA-SGGYTAGR  257 (397)
T ss_pred             cc-CceEEEeC
Confidence            55 55888764

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.76  E-value=1.4e-17  Score=160.03  Aligned_cols=156  Identities=10%  Similarity=0.051  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHHh
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARY  173 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~----~~~~  173 (356)
                      +++.+.+++++|.+.       .+++++|+.|+..++. +..             .+++|+++.+.|.++..    .+..
T Consensus        50 ~~le~~la~l~g~~~-------~l~~~sG~~al~~~l~-ll~-------------~Gd~Vl~~~~~y~~~~~~~~~~~~~  108 (378)
T TIGR01329        50 TALESLLAKLDKADR-------AFAFSSGMAALDVITR-LLN-------------NGDEIIAGDDLYGGTDRLLTQVVPR  108 (378)
T ss_pred             HHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHH-HhC-------------CCCEEEEcCCCchHHHHHHHHHHHH
Confidence            456666999999853       6677777877766543 322             15789999999887654    3456


Q ss_pred             hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccccccc
Q 018437          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP  253 (356)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~  253 (356)
                      .|++++.++++      |++++++++++++++|++++|+||+|.+.|+++|+++|+++      +++++||++++.+.. 
T Consensus       109 ~G~~v~~vd~~------d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~------g~~vivD~a~~~~~~-  175 (378)
T TIGR01329       109 SGVVVVHVDTT------DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQ------NALVVVDNTMMSPLL-  175 (378)
T ss_pred             cCcEEEEeCCC------CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHc------CCEEEEECCCccccc-
Confidence            79999988763      78999999999999999999999999999999999999999      999999999865432 


Q ss_pred             ccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCCC
Q 018437          254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKD  294 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~~  294 (356)
                       .   .+..   .++|.+..|+|||+++|.+  .|+++++++.
T Consensus       176 -~---~~l~---~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~  211 (378)
T TIGR01329       176 -C---NPLE---LGADIVYHSATKFLAGHSDVMAGVLAVKGEE  211 (378)
T ss_pred             -C---Chhh---cCCcEEEEecceeccCCccceeEEEEeCcHH
Confidence             1   1122   3789999999999999887  8999887643

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.76  E-value=2.9e-17  Score=156.05  Aligned_cols=192  Identities=17%  Similarity=0.107  Sum_probs=141.3

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +++|.+.+++.++.... ..|.. +...    ++++.+++++|+++     ..+++|+|+++++..+++++.++      
T Consensus        32 ~~~~~~~~a~~~~~~~~-~~y~~-~~~~----~lr~~ia~~~~~~~-----~~i~~~~G~~~~l~~~~~~l~~~------   94 (346)
T TIGR01141        32 GPPPKAKEALRAEADKL-HRYPD-PDPA----ELKQALADYYGVDP-----EQILLGNGSDEIIELLIRAFLEP------   94 (346)
T ss_pred             CCCHHHHHHHHHhHHHh-hcCCC-CCHH----HHHHHHHHHhCcCh-----HHEEEcCCHHHHHHHHHHHhcCC------
Confidence            44577888887765322 22222 2223    45666888888765     24889999999998887776432      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHH
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~  226 (356)
                             +++|+++.++|..+...++..|++++.+|++++ +.+|+++|++++.+++++|++++++||||.+.|++++.+
T Consensus        95 -------gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~  166 (346)
T TIGR01141        95 -------GDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED-GQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEA  166 (346)
T ss_pred             -------CCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC-CCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence                   578999999998888888999999999999875 899999999998888999999999999999999999999


Q ss_pred             HHHHhhhccCCCCcEEEecccccccccccCCCCcccc-cCCCceEEEEcCCcCCCC-CcCeeEEEEe
Q 018437          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLV-YAGVGWVVWR  291 (356)
Q Consensus       227 i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~Ds~~~~~hK~l~~-P~g~g~l~~~  291 (356)
                      +|+.+..    ++++++|++|+.+..    .....+. .....+.+..|.+|+++. +.++|+++.+
T Consensus       167 l~~~~~~----~~~ii~D~~y~~~~~----~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~  225 (346)
T TIGR01141       167 VLERTPE----DALVVVDEAYGEFSG----EPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIAN  225 (346)
T ss_pred             HHHhCCC----CcEEEEECchhhhcC----CccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecC
Confidence            9987631    899999999985332    1011111 111223455678999843 4568999874

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.75  E-value=5.1e-17  Score=156.43  Aligned_cols=203  Identities=19%  Similarity=0.126  Sum_probs=145.9

Q ss_pred             cccccccCC-CChHHHHHHHHHHhcccC-CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           58 LNLASFVTT-WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      ++|+...++ ++++.+.+++.++++... ..|....+..    ++++++++++|+++     ..+++|+|+++++..++.
T Consensus        31 i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~----~lr~~ia~~l~~~~-----~~v~~~~g~t~al~~~~~  101 (380)
T PRK06225         31 IWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFP----ELRELILKDLGLDD-----DEALITAGATESLYLVMR  101 (380)
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCcchH----HHHHHHHHhcCCCC-----CcEEEeCCHHHHHHHHHH
Confidence            344443333 345788888887776432 2232222433    45566888889876     348999999999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC--CccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~--~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      ++..+             +++|++++++|..+...++..|++++.+|++.  +++.+|++++++++++++++|++++|+|
T Consensus       102 ~~~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~N  168 (380)
T PRK06225        102 AFLSP-------------GDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLN  168 (380)
T ss_pred             HhcCC-------------CCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCC
Confidence            77432             46899999999988889999999999999742  2478999999999998899999999999


Q ss_pred             cccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCC-CcCeeEEE
Q 018437          214 LTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV-YAGVGWVV  289 (356)
Q Consensus       214 ~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g~g~l~  289 (356)
                      |||.+.   ++++|.++|+++      ++++++|++|+.+....  . ....+ .+....+..++.|+++. ...+|+++
T Consensus       169 ptG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~~--~-~~~~~-~~~~~i~~~s~SK~~g~~G~RiG~i~  238 (380)
T PRK06225        169 PLGSSYTEEEIKEFAEIARDN------DAFLLHDCTYRDFAREH--T-LAAEY-APEHTVTSYSFSKIFGMAGLRIGAVV  238 (380)
T ss_pred             CCCcCCCHHHHHHHHHHHHHC------CcEEEEehhHHHHhccC--C-chhhc-CCCCEEEEeechhhcCCccceeEEEe
Confidence            999974   589999999999      99999999997643211  0 00111 12234445577899842 23479998


Q ss_pred             EeC
Q 018437          290 WRT  292 (356)
Q Consensus       290 ~~~  292 (356)
                      .++
T Consensus       239 ~~~  241 (380)
T PRK06225        239 ATP  241 (380)
T ss_pred             cCH
Confidence            753

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.75  E-value=1.2e-16  Score=154.36  Aligned_cols=214  Identities=9%  Similarity=-0.057  Sum_probs=157.1

Q ss_pred             cCCCCcccccccCCCC-hHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEeCChhHH
Q 018437           53 DGNPRLNLASFVTTWM-EPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA-VGVGTVGSSEA  129 (356)
Q Consensus        53 ~~~~~~~l~~~~~~~~-~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~Ggt~a  129 (356)
                      .+...++|..+.+..+ ++.+.+++.+.+... ...|...++...+++++.+++.+..|.+.+.   . .+++|+|++++
T Consensus        28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~---~~~I~it~Gs~~a  104 (388)
T PRK07366         28 AGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDP---ETEVLPLIGSQEG  104 (388)
T ss_pred             cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCC---cCeEEECCCcHHH
Confidence            3444455555555443 567888887766432 2345556688889999999998888865421   2 47889999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEE
Q 018437          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAA  208 (356)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~  208 (356)
                      +.+++.++.++             +++|+++.|+|+.+...++..|++++.||+++ +.+.+|++++++.+.+++++|++
T Consensus       105 l~~~~~~l~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l  171 (388)
T PRK07366        105 TAHLPLAVLNP-------------GDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVL  171 (388)
T ss_pred             HHHHHHHhCCC-------------CCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEE
Confidence            99988877543             57899999999999999999999999999974 34788999998888778899999


Q ss_pred             ecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C-CC--ceEEEEcCCcCC-C
Q 018437          209 ILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L-PL--VKSINVSGHKYG-L  280 (356)
Q Consensus       209 ~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~-~~--~Ds~~~~~hK~l-~  280 (356)
                      +.|+||||.+-+   +++|.++|+++      ++++++|++|..+...  .......+. . ..  .-.+.-|+.|.+ .
T Consensus       172 ~~p~NPTG~~~s~~~~~~l~~~a~~~------~~~ii~De~Y~~~~~~--~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~  243 (388)
T PRK07366        172 SYPHNPTTAIAPLSFFQEAVAFCQQH------DLVLVHDFPYVDLVFD--GEVEPPSILQADPEKSVSIEFFTLSKSYNM  243 (388)
T ss_pred             eCCCCCCCccCCHHHHHHHHHHHHHc------CeEEEEecchhhcccC--CCCCCCChhhCCCCcccEEEEeecccccCC
Confidence            999999999854   56777899999      9999999999876531  111011111 1 11  123445789987 4


Q ss_pred             CCcCeeEEEE
Q 018437          281 VYAGVGWVVW  290 (356)
Q Consensus       281 ~P~g~g~l~~  290 (356)
                      ....+|+++.
T Consensus       244 ~GlRiG~~v~  253 (388)
T PRK07366        244 GGFRIGFAIG  253 (388)
T ss_pred             cchhheehcC
Confidence            6678999875

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.75  E-value=1.9e-17  Score=160.12  Aligned_cols=156  Identities=17%  Similarity=0.031  Sum_probs=121.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhh
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYF  174 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~  174 (356)
                      ++.+.++++.|.+.       .+++++|++++.+++.++..+             +++|+++.+.|..    +...+...
T Consensus        64 ~Le~~lA~l~g~~~-------~v~~~sG~~Ai~~~l~all~p-------------GD~Vvv~~p~Y~~t~~~~~~~~~~~  123 (405)
T PRK08776         64 LLGEALAELEGGAG-------GVITATGMGAINLVLNALLQP-------------GDTLVVPHDAYGGSWRLFNALAKKG  123 (405)
T ss_pred             HHHHHHHHHhCCCc-------eEEEcCHHHHHHHHHHHHhCC-------------CCEEEEccCCchHHHHHHHHHHHhc
Confidence            34456888888753       577888899998888877542             5789999999876    44445555


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      |++++.++.      .|+++|++++++++++|++++|+||+|.+.|+++|.++|+++      |+++++|++|..+..  
T Consensus       124 g~~v~~v~~------~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~------gi~vIvD~a~a~~~~--  189 (405)
T PRK08776        124 HFALITADL------TDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV------GALTVVDNTFLSPAL--  189 (405)
T ss_pred             CcEEEEECC------CCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHc------CCEEEEECCCccccc--
Confidence            777776653      378999999988999999999999999999999999999999      999999999975322  


Q ss_pred             cCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCCC
Q 018437          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKD  294 (356)
Q Consensus       255 ~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~~  294 (356)
                      .   .+..   .++|.+..|+||++++|.+  .|+++.++++
T Consensus       190 ~---~pl~---~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~  225 (405)
T PRK08776        190 Q---KPLE---FGADLVLHSTTKYINGHSDVVGGAVVARDAE  225 (405)
T ss_pred             C---Cccc---ccCCEEEecCceeecCCCCceEEEEEeCCHH
Confidence            1   1122   3789999999999988865  5777766543

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.75  E-value=7e-17  Score=155.50  Aligned_cols=187  Identities=14%  Similarity=0.088  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcC
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (356)
                      +...+++.+.+..+..  ...+...++|+    .+++++|.+.       .++++|||+|+.+++.++.-          
T Consensus        10 ~~~~~~v~~~~~~~~~--~~g~~~~~le~----~la~~~g~~~-------~v~~~sgt~al~~~l~al~~----------   66 (380)
T TIGR03588        10 QDDIDAVVEVLKSDFL--TQGPTVPAFEE----ALAEYVGAKY-------AVAFNSATSALHIACLALGV----------   66 (380)
T ss_pred             HHHHHHHHHHHhcCCc--cCChhHHHHHH----HHHHHHCCCe-------EEEEcCHHHHHHHHHHHcCC----------
Confidence            3345566666654332  22344455554    4888888863       56677899999999887621          


Q ss_pred             CCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh----hCceEEEEecCCCcccccCCHHHHH
Q 018437          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFEDVKLLH  225 (356)
Q Consensus       150 ~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~~~~i~~I~  225 (356)
                        ..+++|+++.++|.++..++...|+++++++++++++.+|+++|+++++    +++++|+++   +++|...|+++|.
T Consensus        67 --~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~---~~~G~~~~~~~i~  141 (380)
T TIGR03588        67 --GPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPV---DFAGKSVDMQAIA  141 (380)
T ss_pred             --CCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEe---CCCCccCCHHHHH
Confidence              1157999999999999999999999999999976568999999999998    678888754   4679999999999


Q ss_pred             HHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCC--cCCCCCcCeeEEEEeCCCC
Q 018437          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       226 ~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~l~~~~~~~  295 (356)
                      ++|+++      ++++++|++++.+..  ... .+... ....|..++|+|  |++.+|.| |++++.+++.
T Consensus       142 ~l~~~~------~~~lI~D~a~a~g~~--~~~-~~~g~-~~~~d~~~~S~~~~K~~~~~~G-G~v~~~~~~~  202 (380)
T TIGR03588       142 ALAKKH------GLKIIEDASHALGAE--YGG-KPVGN-CRYADATVFSFHPVKIITTAEG-GAVTTNDEEL  202 (380)
T ss_pred             HHHHHc------CCEEEEECCCcccCc--cCC-EeCCC-ccccceEEEecCCCCcccccCc-eEEEECCHHH
Confidence            999999      999999999986543  111 11110 113499999988  88877654 6666655433

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.75  E-value=8.5e-17  Score=156.14  Aligned_cols=283  Identities=11%  Similarity=0.021  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhccc-----CCC--cccCcchHHHHHHHHHHHHHHhCCCC
Q 018437           40 EAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKN-----YVD--MDEYPVTTELQNRCVNMIAHLFNTPV  112 (356)
Q Consensus        40 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~-----~~~--~~~~~~~~~le~~~~~~la~l~g~~~  112 (356)
                      .++.+.+++...+.. ..++|..- -+..++.+.+++.+.+.+.     ++.  |.......++|..+.+...++||++.
T Consensus        35 ~~~~~~~~~e~~rq~-~~l~Lias-EN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~  112 (493)
T PRK13580         35 PRIAEAIRQELADQR-SSLKLIAS-ENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEH  112 (493)
T ss_pred             HHHHHHHHHHHHHHh-cCceEecc-cccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCc
Confidence            445555555544432 22233111 1245677888876555431     111  12233667999999999999999985


Q ss_pred             CCCCCCCeEEeCChhHHHHHHHHHHHHH----------------------HHHHHHhcCCCCCCCeEEecC---CCcchH
Q 018437          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRK----------------------WQQKRKEQGKPYDKPNIVTGA---NVQVCW  167 (356)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~----------------------~~~~~~~~g~~~~~~~vi~s~---~~h~s~  167 (356)
                            ..+-..+|+.||+.+++++..+                      |.+-|+.    ..+++|+.-+   -.|.+.
T Consensus       113 ------anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~----~~gd~i~~l~l~~GGHlth  182 (493)
T PRK13580        113 ------AYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAE----LGNQRLLGMSLDSGGHLTH  182 (493)
T ss_pred             ------ccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhcc----CCCCEEEeecCCCCCeeec
Confidence                  2345567899999999998753                      1111111    1145665432   234332


Q ss_pred             HHHHHhhC--CeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          168 EKFARYFE--VELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       168 ~~~~~~~G--~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .......|  ..++..+++++++.+|.+++++.+.++++.|++++.++. |.+.|+++|.++|+++      |++++||+
T Consensus       183 g~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~------gA~L~VD~  255 (493)
T PRK13580        183 GFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEV------GAVLMVDM  255 (493)
T ss_pred             CcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHc------CCEEEEEC
Confidence            22223333  456677777656899999999999998888999999998 4477999999999999      99999999


Q ss_pred             ccccccccccCCCCcccc-cCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhH
Q 018437          246 ASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~-~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~  324 (356)
                      ||+.++++.  ...+.+. ...++|.++.++||++++|.| |+++++++ .. +.+....+++.+         +.....
T Consensus       256 AH~~Gligg--~~~~~~~~~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~-l~-~~L~~a~P~i~g---------g~l~p~  321 (493)
T PRK13580        256 AHFAGLVAG--KVFTGDEDPVPHADIVTTTTHKTLRGPRG-GLVLAKKE-YA-DAVDKGCPLVLG---------GPLPHV  321 (493)
T ss_pred             chhhceecc--ccchhhcCCCCCCcEEEeCChhhccCCCe-EEEEecHH-HH-HHHhhCCCcccC---------CCccHH
Confidence            999887741  1111011 134799999999999999997 78877643 21 221111123322         222333


Q ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          325 IIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       325 ~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      +++...+++.+..++++++.++..+++++|+
T Consensus       322 iAA~avAl~e~~~~ef~~y~~~l~~Na~~La  352 (493)
T PRK13580        322 MAAKAVALAEARTPEFQKYAQQVVDNARALA  352 (493)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            4545555666544444556666666666553

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.75  E-value=1e-16  Score=154.51  Aligned_cols=210  Identities=12%  Similarity=0.040  Sum_probs=153.0

Q ss_pred             cccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|+.+.+..+ ++.+.+.+..........|....+...+++.+.+++.+.+|++.+.   ..+++|+|+++++..++.+
T Consensus        32 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~---~~i~it~G~~~al~~~~~~  108 (384)
T PRK06348         32 IDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKR---NEIMATVGACHGMYLALQS  108 (384)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCh---hhEEEcCChHHHHHHHHHH
Confidence            34444444432 3555554433333333445555677889999999998887776432   4589999999999999888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec-CCccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      +..+             +++|+++.++|..+...++..|++++.+|++ ++++.+|+++|++++++++++|++++|+|||
T Consensus       109 ~~~~-------------gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPt  175 (384)
T PRK06348        109 ILDP-------------GDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPT  175 (384)
T ss_pred             hcCC-------------CCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCC
Confidence            7543             5789999999999999999999999999874 3357899999999998888999999999999


Q ss_pred             cccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-cccc-CCCceEEEEcCCcCCC-CCcCeeEEE
Q 018437          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAGVGWVV  289 (356)
Q Consensus       216 G~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~  289 (356)
                      |.+-+   +++|.++|+++      ++++++|++|+.+...  ..... ..+. ...-..+.-|..|.++ ....+|+++
T Consensus       176 G~~~s~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v  247 (384)
T PRK06348        176 GAVFSKETLEEIAKIAIEY------DLFIISDEVYDGFSFY--EDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVI  247 (384)
T ss_pred             CcCCCHHHHHHHHHHHHHC------CeEEEEecccccceeC--CCccchhhcCCCcCcEEEEecchhccCCccccceeee
Confidence            99854   78888999999      9999999999876541  11011 1111 1122344557889875 567899988


Q ss_pred             Ee
Q 018437          290 WR  291 (356)
Q Consensus       290 ~~  291 (356)
                      ..
T Consensus       248 ~~  249 (384)
T PRK06348        248 AP  249 (384)
T ss_pred             cC
Confidence            74

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.75  E-value=2.4e-17  Score=158.95  Aligned_cols=154  Identities=18%  Similarity=0.044  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH----HHHHh
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE----KFARY  173 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~----~~~~~  173 (356)
                      +++++.+++++|.+.       .++|+||++|+..++.++..+             +++||++.+.|.+..    ..+..
T Consensus        64 ~~le~~la~l~g~~~-------~v~~ssG~~Ai~~al~al~~~-------------Gd~Vi~~~~~y~~t~~~~~~~~~~  123 (390)
T PRK08133         64 TMFQERLAALEGAEA-------CVATASGMAAILAVVMALLQA-------------GDHVVSSRSLFGSTVSLFEKIFAR  123 (390)
T ss_pred             HHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEccCcchhHHHHHHHHHHH
Confidence            345566899999864       688999999999998876542             578999998886533    45567


Q ss_pred             hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccccccc
Q 018437          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP  253 (356)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~  253 (356)
                      .|++++.++++      |+++++++++++|++|++++|+||+|.+.|+++|.++|+++      ++++++|++++.+.. 
T Consensus       124 ~G~~v~~vd~~------d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~------gi~livD~t~~~~~~-  190 (390)
T PRK08133        124 FGIETTFVDLT------DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAA------GALLVVDNCFCTPAL-  190 (390)
T ss_pred             cCcEEEEECCC------CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHc------CCEEEEECCCccccc-
Confidence            89999888764      68899999999999999999999999999999999999999      999999999865432 


Q ss_pred             ccCCCCcccccCCCceEEEEcCCcCCCCCcC-e-eEEEEe
Q 018437          254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-V-GWVVWR  291 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~-g~l~~~  291 (356)
                       ..   +.   ..++|.++.|+||+++++.. . |+++.+
T Consensus       191 -~~---pl---~~g~Divv~S~sK~~~g~g~~~GG~vv~~  223 (390)
T PRK08133        191 -QQ---PL---KLGADVVIHSATKYLDGQGRVLGGAVVGS  223 (390)
T ss_pred             -CC---ch---hhCCcEEEeecceeecCCcceEeEEEEcC
Confidence             11   11   23689999999999865532 3 555543

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.75  E-value=3.7e-16  Score=151.56  Aligned_cols=209  Identities=16%  Similarity=0.119  Sum_probs=153.7

Q ss_pred             cccccccCC-----CChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHH
Q 018437           58 LNLASFVTT-----WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (356)
Q Consensus        58 ~~l~~~~~~-----~~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (356)
                      ++|+.+.+.     ++++.+.+++.+.+... ...|...++..++++++.+++.+. |.+.+   ...+++|+|+++++.
T Consensus        34 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~~~~---~~~i~~t~G~~~al~  109 (401)
T TIGR01264        34 IKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DGPIE---ADDVVLCSGCSHAIE  109 (401)
T ss_pred             eecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CCCCC---HHHEEECcChHHHHH
Confidence            466665553     34567888887776643 233555567788888877777653 33321   134889999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEec
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      +++.++.++             +++|+++.++|..+...++..|++++.++++.+ ++.+|++.|++++++++++|++++
T Consensus       110 ~~~~~l~~~-------------gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~  176 (401)
T TIGR01264       110 MCIAALANA-------------GQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNN  176 (401)
T ss_pred             HHHHHhCCC-------------CCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcC
Confidence            998877542             568999999999999999999999999998642 489999999999988889999999


Q ss_pred             CCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCce-EEEEcCCcC-CCCCc
Q 018437          211 GSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVK-SINVSGHKY-GLVYA  283 (356)
Q Consensus       211 ~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~D-s~~~~~hK~-l~~P~  283 (356)
                      |+||||.+.   ++++|.++|+++      ++++++|++|..+..+   ......+.  ..... .+.-|+.|. +....
T Consensus       177 p~NPtG~~~~~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~---~~~~~~~~~~~~~~~vi~~~SfSK~~~~~Gl  247 (401)
T TIGR01264       177 PSNPCGSVFSRQHLEEILAVAERQ------CLPIIADEIYGDMVFS---GATFEPLASLSSTVPILSCGGLAKRWLVPGW  247 (401)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEhhhhhhccC---CcccccHHHcCCCCcEEEEccCcccCCCccc
Confidence            999999985   478899999999      9999999999875531   11111111  11112 345568995 77778


Q ss_pred             CeeEEEEeC
Q 018437          284 GVGWVVWRT  292 (356)
Q Consensus       284 g~g~l~~~~  292 (356)
                      .+|+++..+
T Consensus       248 RiG~iv~~~  256 (401)
T TIGR01264       248 RLGWIIIHD  256 (401)
T ss_pred             eEEEEEecC
Confidence            899998754

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.75  E-value=1.5e-17  Score=158.90  Aligned_cols=250  Identities=13%  Similarity=0.011  Sum_probs=165.6

Q ss_pred             cCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeC-ChhHHHHHHHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTV-GSSEAIMLAGLAFKRKWQ  142 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~-Ggt~a~~~al~~~~~~~~  142 (356)
                      .|...++.+.+++.....+-..-...++...++.+++++.+++++|++.+    ..+++++ +||.++..+++.+..   
T Consensus        10 GP~~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~----~~v~f~~gs~T~a~~~~~~~l~~---   82 (361)
T TIGR01366        10 GPSKVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDG----YEVILGNGGATAFWDAATFGLIE---   82 (361)
T ss_pred             CCcCCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCC----ceEEEECCchhHHHHHHHHhccc---
Confidence            34455677888765331111111123556778888999999999999642    3467764 599999999887642   


Q ss_pred             HHHHhcCCCCCCCeEEecCCCcc-hHHHHHHhh--CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccC
Q 018437          143 QKRKEQGKPYDKPNIVTGANVQV-CWEKFARYF--EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFE  219 (356)
Q Consensus       143 ~~~~~~g~~~~~~~vi~s~~~h~-s~~~~~~~~--G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~  219 (356)
                                 +..++++.-.|. .+.+.+...  +.+++.+++++. ..++.     .+.+++++|++++.+|.||++.
T Consensus        83 -----------~~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~lV~~~h~et~tG~~~  145 (361)
T TIGR01366        83 -----------KKSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPG-SAPEP-----QADPGVDVIAWAHNETSTGVAV  145 (361)
T ss_pred             -----------ccccEEecCHHHHHHHHHHHhhhccCCceEEecCCC-CCCCC-----ccCCCCCEEEEcccCCccceec
Confidence                       123334334443 244555542  237788887653 33433     3567899999999999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCc-c
Q 018437          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP-D  298 (356)
Q Consensus       220 ~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~-~  298 (356)
                      |+++|   +|++      |++++||++++.+..       +.++.  .+|.+++++|||+++|.|.++++++++.+.. .
T Consensus       146 pi~~I---~~~~------g~~~iVDavqs~g~~-------~idv~--~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~  207 (361)
T TIGR01366       146 PVRRP---EGSD------DALVVIDATSGAGGL-------PVDIA--ETDVYYFAPQKNFASDGGLWLAIMSPAALERIE  207 (361)
T ss_pred             ccccc---cccC------CCeEEEEcCccccCC-------CCCHH--HCCEEEEEchhhcCCCCceEEEEECHHHHhhhh
Confidence            99998   5788      999999999987655       34544  3899999999999988888888877642210 0


Q ss_pred             ccccc----cCCCCCC-----CCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          299 ELVFH----INYLGSD-----QPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       299 ~~~~~----~~~~~~~-----~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                      .....    +.|+...     .......+|.+....+++..+++.+-.+ |++.+.++..++++++.
T Consensus       208 ~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~  274 (361)
T TIGR01366       208 AIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLY  274 (361)
T ss_pred             cccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            00000    0111000     0011234677777777999999999888 59999899888887764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.75  E-value=4.5e-17  Score=157.43  Aligned_cols=162  Identities=14%  Similarity=0.004  Sum_probs=121.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|    +.+++++|.+.       ..++++|+.++..++.+...+             +++|+++.+.|.++..
T Consensus        64 ~p~~~~Le----~~lA~l~G~~~-------~~~~~sG~~Ai~~~l~~~l~~-------------Gd~Vl~~~~~y~~~~~  119 (398)
T PRK07504         64 NPTVDMFE----KRMCALEGAED-------ARATASGMAAVTAAILCQVKA-------------GDHVVAARALFGSCRY  119 (398)
T ss_pred             CchHHHHH----HHHHHHhCCCe-------eeEecCHHHHHHHHHHHHhCC-------------CCEEEEcCCchhHHHH
Confidence            34455555    45889999975       356778899988777665432             5789999988876443


Q ss_pred             ----HHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 ----FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ----~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                          .+...|++++.++      .+|+++++++++++|++|++++|+||+|.+.|+++|.++|+++      |+++++|+
T Consensus       120 ~~~~~~~~~G~~v~~vd------~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~------gi~lvvD~  187 (398)
T PRK07504        120 VVETLLPRYGIESTLVD------GLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQA------GAKLVVDN  187 (398)
T ss_pred             HHHHHHhhcCeEEEEEC------CCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHc------CCEEEEEC
Confidence                3445688888774      2689999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc-CeeEEEEeCCCC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRTKDD  295 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l~~~~~~~  295 (356)
                      +|+.+..  ..   +.   ..++|.++.|+||+++++. ..|.+++.+++.
T Consensus       188 a~a~~~~--~~---~~---~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~  230 (398)
T PRK07504        188 VFATPLF--QK---PL---ELGAHIVVYSATKHIDGQGRCLGGVVLSDKAW  230 (398)
T ss_pred             Ccccccc--CC---ch---hhCCCEEEeeccccccCCccceEEEEEeCcHH
Confidence            9975433  11   11   2378999999999987653 344334444433

>PRK09265 aminotransferase AlaT; Validated

Probab=99.75  E-value=1.9e-16  Score=153.78  Aligned_cols=209  Identities=12%  Similarity=0.042  Sum_probs=149.0

Q ss_pred             CCCcccccccCC----CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHh--CCCCCCCCCCCeEEeCChhH
Q 018437           55 NPRLNLASFVTT----WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLF--NTPVADDKTAVGVGTVGSSE  128 (356)
Q Consensus        55 ~~~~~l~~~~~~----~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~--g~~~~~~~~~~~~~t~Ggt~  128 (356)
                      ...++|..+.+.    ++++.+.+.+.+.+.. ...|....+...+++++.+++.+..  |+++     ..+++|+|+++
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-----~~i~~t~G~~~  106 (404)
T PRK09265         33 HKILKLNIGNPAPFGFEAPDEILRDVIRNLPT-AQGYSDSKGLFSARKAIMQYYQQKGIPDVDV-----DDIYIGNGVSE  106 (404)
T ss_pred             CCeEEecCCCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCCCcHHHHHHHHHHHhccCCCCCCc-----ccEEEeCChHH
Confidence            333445444442    2345677776655442 3345455566777777777665432  4444     34889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEE
Q 018437          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVA  207 (356)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~  207 (356)
                      ++.+++.++..+             +++|+++.++|..+..+++..|+.++.++++. +++.+|+++|++++.+++++|+
T Consensus       107 ~l~~~~~~~~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~  173 (404)
T PRK09265        107 LIVMAMQALLNN-------------GDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIV  173 (404)
T ss_pred             HHHHHHHHhCCC-------------CCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEE
Confidence            998888876432             57899999999999999999999999888864 3478999999999988899999


Q ss_pred             EecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEc-CCcCC-C
Q 018437          208 AILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVS-GHKYG-L  280 (356)
Q Consensus       208 ~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~-~hK~l-~  280 (356)
                      +++|+||||.+.+   +++|.++|+++      ++++++|++|+.+...   ......+.  ......++++ ..|.+ .
T Consensus       174 l~~P~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~---~~~~~~~~~~~~~~~vi~~~S~SK~~~~  244 (404)
T PRK09265        174 IINPNNPTGAVYSKELLEEIVEIARQH------NLIIFADEIYDKILYD---GAVHISIASLAPDLLCVTFNGLSKAYRV  244 (404)
T ss_pred             EECCCCCCCcCCCHHHHHHHHHHHHHC------CCEEEEehhhhhccCC---CCCcCCHHHcCCCceEEEEecchhhccC
Confidence            9999999999987   88899999999      9999999999875431   11111111  1222344444 57987 4


Q ss_pred             CCcCeeEEEEe
Q 018437          281 VYAGVGWVVWR  291 (356)
Q Consensus       281 ~P~g~g~l~~~  291 (356)
                      ....+|+++..
T Consensus       245 pGlRiG~~v~~  255 (404)
T PRK09265        245 AGFRVGWMVLS  255 (404)
T ss_pred             cccceEEEEEe
Confidence            55678999874

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.75  E-value=2.7e-17  Score=158.25  Aligned_cols=155  Identities=14%  Similarity=-0.064  Sum_probs=119.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH----Hhh
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RYF  174 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~----~~~  174 (356)
                      ++++.++++.|.+.       .++++||++++..++.++.++             +++|+++.+.|.......    ...
T Consensus        56 ~L~~~lA~l~g~~~-------~i~~~sg~~Ai~~~l~~l~~~-------------GD~Vl~~~~~y~~~~~~~~~~~~~~  115 (386)
T PRK08045         56 VVQRALAELEGGAG-------AVLTNTGMSAIHLVTTVFLKP-------------GDLLVAPHDCYGGSYRLFDSLAKRG  115 (386)
T ss_pred             HHHHHHHHHhCCCe-------EEEECCHHHHHHHHHHHHcCC-------------CCEEEEcCCCcHHHHHHHHHHHhhC
Confidence            34445888888542       789999999999988876543             579999999988533222    223


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      |+++..++      ..|++++++++++++++|++++|+||||.+.|+++|.++|+++      ++++++|++|..+..  
T Consensus       116 gi~v~~vd------~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~------g~~vivDeay~~~~~--  181 (386)
T PRK08045        116 CYRVLFVD------QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREA------GAVSVVDNTFLSPAL--  181 (386)
T ss_pred             CeEEEEeC------CCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHc------CCEEEEECCCCcccc--
Confidence            44555543      2589999999998999999999999999999999999999999      999999999976433  


Q ss_pred             cCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCC
Q 018437          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTK  293 (356)
Q Consensus       255 ~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~  293 (356)
                      ..   +.   ..++|.++.|.|||++++.+  .|+++.+++
T Consensus       182 ~~---pl---~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~  216 (386)
T PRK08045        182 QN---PL---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDP  216 (386)
T ss_pred             CC---ch---hhCCCEEEeecceeccCCCCceeEEEEeCcH
Confidence            11   12   23789999999999988876  677776554

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.74  E-value=3.7e-17  Score=157.73  Aligned_cols=156  Identities=14%  Similarity=0.067  Sum_probs=125.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHHhh
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARYF  174 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~----~~~~~  174 (356)
                      ++.+.++++.|.+.       +++++||++|+.+++.++.++             +++|+++.+.|..+..    .+...
T Consensus        69 ~Le~~lA~l~g~~~-------~l~~~sgt~Ai~~~l~al~~~-------------GD~Vl~~~~~y~~~~~~~~~~~~~~  128 (394)
T PRK07050         69 ALAQRLAEIEGGRH-------ALLQPSGLAAISLVYFGLVKA-------------GDDVLIPDNAYGPNRDHGEWLARDF  128 (394)
T ss_pred             HHHHHHHHHhCCCe-------EEEeccHHHHHHHHHHHHhCC-------------CCEEEEecCCcccHHHHHHHHHHhc
Confidence            44455889988753       889999999999999887543             5799999999987553    45667


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      |+++++++..      +.++++++++++|++|++++|+||+|.+.|+++|.++|+++      ++++++|++|+.+..  
T Consensus       129 Gi~v~~vd~~------~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~------gi~livD~a~a~~~~--  194 (394)
T PRK07050        129 GITVRFYDPL------IGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARAR------GVVTAIDNTYSAGLA--  194 (394)
T ss_pred             CeEEEEECCC------CHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHc------CCEEEEECCcccccc--
Confidence            9988887643      34788999999999999999999999999999999999999      999999999976443  


Q ss_pred             cCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCCC
Q 018437          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKD  294 (356)
Q Consensus       255 ~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~~  294 (356)
                      ..+   .   ..++|.++.|.+|++.+..+  .|++++++++
T Consensus       195 ~~~---l---~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~  230 (394)
T PRK07050        195 FKP---F---EHGVDISVQALTKYQSGGSDVLMGATITADAE  230 (394)
T ss_pred             cCH---H---HcCCeEEEEECCceecCCCCeeEEEEEECCHH
Confidence            111   1   23789999999999876655  5777776543

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.74  E-value=2.2e-16  Score=150.41  Aligned_cols=189  Identities=16%  Similarity=0.045  Sum_probs=140.6

Q ss_pred             ChHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +++.+.+++.+++.. ....|. .+...    ++++.+++++|+++     ..+++|+|+++++..++.++.++      
T Consensus        36 ~p~~~~~a~~~~~~~~~~~~y~-~~~~~----~lr~~ia~~~~~~~-----~~i~it~G~~~~l~~~~~~l~~~------   99 (351)
T PRK14807         36 LPEEVIKNIQEIVKSSQVNIYP-DPTAE----KLREELARYCSVVP-----TNIFVGNGSDEIIHLIMLAFINK------   99 (351)
T ss_pred             CCHHHHHHHHHHhhcCcccCCC-CccHH----HHHHHHHHHhCCCc-----ccEEEecCHHHHHHHHHHHhcCC------
Confidence            456788888776643 222222 22333    45556777888876     34899999999998888776442      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHH
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLH  225 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~  225 (356)
                             +++|+++.++|..+...++..|++++.++++++ +.+|++.+++++++ ++++|++++|+||||.+.+.+++.
T Consensus       100 -------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~  171 (351)
T PRK14807        100 -------GDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKED-YTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDII  171 (351)
T ss_pred             -------CCEEEEeCCChHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHH
Confidence                   578999999999999999999999999999864 89999999999975 889999999999999999999999


Q ss_pred             HHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       226 ~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      ++|+++      +.++++|++|+.+.    ............-..+.-|..|.++ ....+|+++.
T Consensus       172 ~l~~~~------~~~~ivDe~y~~~~----~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~  227 (351)
T PRK14807        172 KIIEKS------RGIVVVDEAYFEFY----GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVA  227 (351)
T ss_pred             HHHHhC------CCEEEEeCcchhhc----ccchHHHhhhCCCEEEEecchHhcccchhceeeeec
Confidence            999998      88899999997642    1111001111111344556889875 5678899875

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.74  E-value=5.1e-17  Score=156.60  Aligned_cols=160  Identities=16%  Similarity=0.039  Sum_probs=123.9

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~  170 (356)
                      +....+|+.    +++++|.+.       .+++++|++|+..++.++.++             +++|+++.+.|.+....
T Consensus        61 p~~~~Le~~----lA~~~g~~~-------~i~~~sG~~Ai~~~l~all~~-------------Gd~Vl~~~~~y~~t~~~  116 (388)
T PRK07811         61 PTRTALEEQ----LAALEGGAY-------GRAFSSGMAATDCLLRAVLRP-------------GDHIVIPNDAYGGTFRL  116 (388)
T ss_pred             ccHHHHHHH----HHHHhCCCc-------eEEeCCHHHHHHHHHHHHhCC-------------CCEEEEcCCCchHHHHH
Confidence            455555554    888888875       456677899999999887543             57899999998854333


Q ss_pred             H----HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          171 A----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       171 ~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                      .    ...|++++.++.      .|+++|++++++++++|+++.|+||+|.+.|+++|.++|+++      ++++++|++
T Consensus       117 ~~~~~~~~gi~~~~~d~------~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~------gi~lIvD~a  184 (388)
T PRK07811        117 IDKVFTRWGVEYTPVDL------SDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDA------GAKVVVDNT  184 (388)
T ss_pred             HHHhCcCCCeEEEEeCC------CCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHc------CCEEEEECC
Confidence            2    234777666653      389999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCCC
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKD  294 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~~  294 (356)
                      |+.+..  ..   +.   ..++|.++.|.+|++++|.+  .|+++.+++.
T Consensus       185 ~a~~~~--~~---p~---~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~  226 (388)
T PRK07811        185 FASPYL--QQ---PL---ALGADVVVHSTTKYIGGHSDVVGGALVTNDEE  226 (388)
T ss_pred             CCcccc--CC---ch---hhCCcEEEecCceeecCCCCcEEEEEEECCHH
Confidence            976433  11   11   23789999999999987765  5888776543

>PLN02231 alanine transaminase

Probab=99.74  E-value=3.4e-16  Score=156.19  Aligned_cols=185  Identities=11%  Similarity=0.007  Sum_probs=143.9

Q ss_pred             CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC
Q 018437           84 YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV  163 (356)
Q Consensus        84 ~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~  163 (356)
                      .+.|....|...+++.+.+++.+..|.+.+.   .++++|+|+++++.+++.++...            .++.|+++.|+
T Consensus       161 ~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~p---e~I~iT~Ga~~ai~~~~~~l~~~------------~gd~Vli~~P~  225 (534)
T PLN02231        161 TGAYSHSQGIKGLRDAIAAGIEARDGFPADP---NDIFLTDGASPAVHMMMQLLIRS------------EKDGILCPIPQ  225 (534)
T ss_pred             ccCcCCCCCcHHHHHHHHHHHHhccCCCCCc---ccEEEeCCHHHHHHHHHHHhccC------------CCCEEEEeCCC
Confidence            3457777899999999999999888876532   45899999999999999887531            15789999999


Q ss_pred             cchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhh------CceEEEEecCCCcccccC---CHHHHHHHHHHhhh
Q 018437          164 QVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDE------NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNE  233 (356)
Q Consensus       164 h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~  233 (356)
                      |+.+...++..|+.++.++++++ +|.+|+++|++++++      +++++++++|+||||.+-   .+++|.++|+++  
T Consensus       226 Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~--  303 (534)
T PLN02231        226 YPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQE--  303 (534)
T ss_pred             ChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc--
Confidence            99999999999999999999853 489999999999875      678899999999999984   577899999999  


Q ss_pred             ccCCCCcEEEecccccccccccCCCCccccc-C--------CCceEEEE-cCCcCC--CCCcCeeEEEEe
Q 018437          234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L--------PLVKSINV-SGHKYG--LVYAGVGWVVWR  291 (356)
Q Consensus       234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~--------~~~Ds~~~-~~hK~l--~~P~g~g~l~~~  291 (356)
                          ++++++|++|..++..  .......+. +        .....+++ |..|.+  .+...+|++.+.
T Consensus       304 ----~l~lI~DEvY~~l~y~--~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~  367 (534)
T PLN02231        304 ----GLVLLADEVYQENVYV--PDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  367 (534)
T ss_pred             ----CCEEEEEccchhcccC--CCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEe
Confidence                9999999999876541  111111111 1        11224444 689954  367889999763

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.74  E-value=4.7e-17  Score=155.96  Aligned_cols=158  Identities=16%  Similarity=0.068  Sum_probs=124.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|++    ++++.|.+.       .++++||++|+..++.++..+             +++||++++.|.....
T Consensus        49 nPt~~~lE~~----lA~l~g~~~-------~~~~~sG~~Ai~~al~all~~-------------GD~Vl~~~~~y~~t~~  104 (377)
T TIGR01324        49 TLTHFALQDA----MCELEGGAG-------CYLYPSGLAAVTNSILAFVKA-------------GDHVLMVDSAYEPTRY  104 (377)
T ss_pred             CccHHHHHHH----HHHHhCCCc-------EEEECcHHHHHHHHHHHhcCC-------------CCEEEEcCCCcHHHHH
Confidence            3555666665    888888764       788999999999999877543             5789999998876554


Q ss_pred             H----HHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 F----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .    ++..|++++.++.+      +.+.++++++++|++|++++|+|++|.+.|+++|+++|+++      ++++++|+
T Consensus       105 ~~~~~~~~~gi~v~~~d~~------~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~------g~~livD~  172 (377)
T TIGR01324       105 FCDIVLKRMGVDITYYDPL------IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNP------GIVIMIDN  172 (377)
T ss_pred             HHHHHHHhcCcEEEEECCC------CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHc------CCEEEEEC
Confidence            3    34567877776532      22789999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEe
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWR  291 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~  291 (356)
                      +|+.+..  ..+   .   ..++|.+..|.|||++++.+  .|+++.+
T Consensus       173 t~a~g~~--~~p---l---~~gaDivv~S~tK~l~G~~d~~gG~v~~~  212 (377)
T TIGR01324       173 TWAAGLL--FKP---L---EHGVDISIQAGTKYLVGHSDIMIGTVVAN  212 (377)
T ss_pred             CCccccc--cCc---c---ccCceEEEecCceeccCCCCceEEEEEeC
Confidence            9986544  111   1   24899999999999988765  5766654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.73  E-value=4.1e-17  Score=157.35  Aligned_cols=155  Identities=16%  Similarity=0.049  Sum_probs=120.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhh
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYF  174 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~  174 (356)
                      ++++.++++.|.+.       .++++.|+.++..++. +..+             +++|+++.+.|.+    +...++..
T Consensus        58 ~le~~lA~l~g~~~-------~v~~~sG~~ai~~~l~-~l~~-------------Gd~Vlv~~~~y~~~~~~~~~~~~~~  116 (390)
T PRK08064         58 ALEDIIAELEGGTK-------GFAFASGMAAISTAFL-LLSK-------------GDHVLISEDVYGGTYRMITEVLSRF  116 (390)
T ss_pred             HHHHHHHHHhCCCC-------eEEECCHHHHHHHHHH-HhCC-------------CCEEEEccCccchHHHHHHHHHHHc
Confidence            44455899999864       3555666777766664 3221             5789999998864    33556678


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      |++++.++++      |++++++++++++++|++++|+||+|.+.|+++|.++|+++      ++++++|++|+.+..  
T Consensus       117 G~~v~~v~~~------d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~------g~~vvvD~a~~~~~~--  182 (390)
T PRK08064        117 GIEHTFVDMT------NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAI------GCLTFVDNTFLTPLL--  182 (390)
T ss_pred             CCEEEEECCC------CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHc------CCEEEEECCCCcccc--
Confidence            9999998863      68999999999999999999999999999999999999999      999999999876433  


Q ss_pred             cCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCCC
Q 018437          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKD  294 (356)
Q Consensus       255 ~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~~  294 (356)
                      ..   +.   ..++|.+..|+|||+++|.|  .|++++++++
T Consensus       183 ~~---~~---~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~  218 (390)
T PRK08064        183 QK---PL---DLGADVVLHSATKFLAGHSDVLAGLAVVKDEE  218 (390)
T ss_pred             cC---ch---hhCCcEEEeecceeccCCccceeEEEEeCCHH
Confidence            11   11   23789999999999988887  5888876543

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.73  E-value=2.6e-16  Score=151.42  Aligned_cols=190  Identities=12%  Similarity=-0.040  Sum_probs=132.9

Q ss_pred             ChHHHHHHHHHHhcccCC---CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYV---DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~---~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      ++|.+.+++.+.+.....   .+....+...+..++++++++++|.+.       .+++++|++++..++.++.++    
T Consensus        54 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~-------~i~~~~g~~~~~~~l~~~~~~----  122 (385)
T PRK05958         54 RHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAER-------ALLFSSGYAANLAVLTALAGK----  122 (385)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc-------EEEECcHHHHHHHHHHHhCCC----
Confidence            457788888877653211   111222445667788889999998532       577778888887766654321    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh---CceEEEEecCCCcccccCCH
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFEDV  221 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~i  221 (356)
                               +++|+++.++|+++...++..|++++.++.      .|++.+++++++   ++.++++..++|++|.+.++
T Consensus       123 ---------gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l  187 (385)
T PRK05958        123 ---------GDLIVSDKLNHASLIDGARLSRARVRRYPH------NDVDALEALLAKWRAGRALIVTESVFSMDGDLAPL  187 (385)
T ss_pred             ---------CCEEEEeCccCHHHHHHHHhcCCceEEeCC------CCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCH
Confidence                     578999999999999999998999888764      278899998875   35667777788999999999


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc--ccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      ++|.++|+++      |+++++|++|+.+..+.......  ..+....-+.+..+.||++ ++.| |+++..
T Consensus       188 ~~i~~ia~~~------~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G-g~~~~~  251 (385)
T PRK05958        188 AELVALARRH------GAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSSG-AAVLGS  251 (385)
T ss_pred             HHHHHHHHHh------CCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccCC-cEEEcC
Confidence            9999999999      99999999997554321000000  1111112335567899998 4555 666543

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.73  E-value=5.2e-17  Score=156.22  Aligned_cols=160  Identities=15%  Similarity=0.018  Sum_probs=124.9

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|...++|+.    +++++|.+.       .+++++|+.|+..++.++..+             +++|+++.+.|.+...
T Consensus        52 np~~~~lE~~----lA~l~g~~~-------~l~~~sG~~Ai~~~l~~ll~~-------------GD~Vlv~~~~y~~~~~  107 (385)
T PRK08574         52 NPTLRPLEEA----LAKLEGGVD-------ALAFNSGMAAISTLFFSLLKA-------------GDRVVLPMEAYGTTLR  107 (385)
T ss_pred             CccHHHHHHH----HHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEcCCCchhHHH
Confidence            4455666655    888888764       678889999999988876542             5799999999998766


Q ss_pred             HHH---hhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 FAR---YFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .++   ..|++++.++       +|+++|++++++ ++++|++.+++||+|.+.|+++|.++|+++      ++++++|+
T Consensus       108 ~~~~~~~~g~~v~~~~-------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~------gi~livD~  174 (385)
T PRK08574        108 LLKSLEKFGVKVVLAY-------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKEL------GAILVVDN  174 (385)
T ss_pred             HHHHhhccCcEEEEEC-------CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHc------CCEEEEEC
Confidence            654   3466666543       357899999988 899999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCCC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKD  294 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~~  294 (356)
                      +++.++.  ..+   .   ..++|.++.|.||++++|.+  .|++++.+++
T Consensus       175 t~a~~~~--~~~---l---~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~  217 (385)
T PRK08574        175 TFATPLL--YRP---L---RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGE  217 (385)
T ss_pred             CCCcccc--CCh---h---hhCCcEEEeeCceeecCCCCceeEEEEECcHH
Confidence            9975433  111   1   24789999999999988764  4666665543

>PRK04311 selenocysteine synthase; Provisional

Probab=99.73  E-value=3.6e-16  Score=152.78  Aligned_cols=194  Identities=15%  Similarity=0.122  Sum_probs=137.3

Q ss_pred             CCChHHHHHHHHHHhcccC-CC--cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHH
Q 018437           66 TWMEPECDKLVMASINKNY-VD--MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ  142 (356)
Q Consensus        66 ~~~~~~v~~~i~~~~~~~~-~~--~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~  142 (356)
                      ++.++.+.+++.+++.... ..  ......... ...+.+.+++++|.+.       .+++++|+.|+++++.++.    
T Consensus        96 s~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r-~~~~e~~lA~l~Gae~-------a~vv~sgtaAl~l~l~~l~----  163 (464)
T PRK04311         96 ALLSEAAIEAVTEAARGYSNLEYDLATGKRGSR-DRALAALLCALTGAED-------ALVVNNNAAAVLLALNALA----  163 (464)
T ss_pred             CCCCHHHHHHHHHHHhcccccccchhhcccchH-HHHHHHHHHHHhCCCe-------EEEECCHHHHHHHHHHHhC----
Confidence            3455788888877765321 01  111122222 2367778999999874       6788888999988775531    


Q ss_pred             HHHHhcCCCCCCCeEEecCCCcch------HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc--
Q 018437          143 QKRKEQGKPYDKPNIVTGANVQVC------WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL--  214 (356)
Q Consensus       143 ~~~~~~g~~~~~~~vi~s~~~h~s------~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~--  214 (356)
                                .+++||++..+|+.      +...++..|+++++|+.+   ...++++++++|+++|++|++++++|+  
T Consensus       164 ----------~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~---~~t~~~dle~aI~~~TklV~~vh~sN~~i  230 (464)
T PRK04311        164 ----------AGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT---NRTHLRDYEQAINENTALLLKVHTSNYRI  230 (464)
T ss_pred             ----------CCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC---CCCCHHHHHHhcCccCeEEEEEcCCCccc
Confidence                      15789999877663      334566779999888764   346899999999999999999999998  


Q ss_pred             cc--ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc--cccCCCCccccc---CCCceEEEEcCCcCCCCCcCeeE
Q 018437          215 TG--EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA--PFLYPDLEWDFR---LPLVKSINVSGHKYGLVYAGVGW  287 (356)
Q Consensus       215 tG--~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~--~~~~~~~~~~~~---~~~~Ds~~~~~hK~l~~P~g~g~  287 (356)
                      +|  ...|+++|+++||++      |+++++|++.|...-  .|..+.. ..+.   ..++|.+++|+|||+++|. +|+
T Consensus       231 ~G~~~~~dl~eI~~lak~~------gi~vivD~gsG~l~~~~~~gl~~~-p~~~~~l~~GaDiv~fSg~K~LgGp~-~G~  302 (464)
T PRK04311        231 EGFTKEVSLAELAALGKEH------GLPVVYDLGSGSLVDLSQYGLPDE-PTVQELLAAGVDLVTFSGDKLLGGPQ-AGI  302 (464)
T ss_pred             cccCCcCCHHHHHHHHHHc------CCeEEEECCCcccccchhccCCCC-CchhhHHhcCCcEEEecCcccccCCc-eEE
Confidence            34  567999999999999      999999997554210  0100111 1221   3589999999999998885 898


Q ss_pred             EEEeC
Q 018437          288 VVWRT  292 (356)
Q Consensus       288 l~~~~  292 (356)
                      ++.++
T Consensus       303 i~g~~  307 (464)
T PRK04311        303 IVGKK  307 (464)
T ss_pred             EEEcH
Confidence            88764

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.73  E-value=7e-17  Score=154.82  Aligned_cols=159  Identities=16%  Similarity=0.071  Sum_probs=124.9

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|...++|+    .+++++|.+.       .+++++|++|+..++.++..+             +++|+++.+.|.+...
T Consensus        39 ~p~~~~le~----~la~l~g~~~-------a~~~~sG~~Ai~~~l~~l~~~-------------gd~Vl~~~~~y~~~~~   94 (369)
T cd00614          39 NPTVDALEK----KLAALEGGEA-------ALAFSSGMAAISTVLLALLKA-------------GDHVVASDDLYGGTYR   94 (369)
T ss_pred             ChhHHHHHH----HHHHHHCCCC-------EEEEcCHHHHHHHHHHHHcCC-------------CCEEEECCCCcchHHH
Confidence            345555555    4888888764       678888999999999887542             5789999988877543


Q ss_pred             ----HHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 ----FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ----~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                          .+...|++++.++.+      |++++++++++++++|++.+++||+|.+.|+++|.++|+++      |+++++|+
T Consensus        95 ~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~------g~~livD~  162 (369)
T cd00614          95 LFERLLPKLGIEVTFVDPD------DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEH------GALLVVDN  162 (369)
T ss_pred             HHHHHHhhcCeEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEEC
Confidence                345678888887653      58899999988899999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      +++.++.  ..   +.   ..++|.++.|.+|+++++..  .|+++.++
T Consensus       163 t~~~~~~--~~---~~---~~g~Divv~S~tK~l~g~~~~~gG~v~~~~  203 (369)
T cd00614         163 TFATPYL--QR---PL---ELGADIVVHSATKYIGGHSDVIAGVVVGSG  203 (369)
T ss_pred             CCcchhc--CC---hh---hhCCcEEEeccceeccCCCCceEEEEEeCc
Confidence            9986543  11   11   23789999999999876542  67777654

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.73  E-value=8.6e-17  Score=154.43  Aligned_cols=150  Identities=18%  Similarity=0.076  Sum_probs=118.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++.|...       .++++||++|+..++.++.++             +++||++.+.|..+..
T Consensus        60 npt~~~Le~~----iA~le~~~~-------~~~~~sG~~Ai~~~l~all~~-------------GD~Vvv~~~~Y~~t~~  115 (394)
T PRK09028         60 TPTHFAFQAA----IVELEGGAG-------TALYPSGAAAISNALLSFLKA-------------GDHLLMVDSCYEPTRD  115 (394)
T ss_pred             CchHHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEECCCcHHHHH
Confidence            4455556554    777777643       689999999999998877543             5799999998866654


Q ss_pred             H----HHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 F----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .    +...|++++.++.+      |.+.++++++++|++|++++|+||+|.+.|+++|+++|+++      |++++||+
T Consensus       116 l~~~~l~~~Gi~v~~v~~~------~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~------g~~lvvD~  183 (394)
T PRK09028        116 LCDKILKGFGIETTYYDPM------IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEH------DIVVMLDN  183 (394)
T ss_pred             HHHHhhhhcceEEEEECCC------CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHc------CCEEEEEC
Confidence            3    34568887776532      45789999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA  283 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~  283 (356)
                      +|+.++.  ..|   .   ..|+|.+..|.|||++++.
T Consensus       184 t~a~p~~--~~P---l---~~GaDivv~S~tK~l~Gh~  213 (394)
T PRK09028        184 TWASPIN--SRP---F---EMGVDISIQAATKYIVGHS  213 (394)
T ss_pred             Ccccccc--CCc---c---ccCceEEEEeCCeEecCCC
Confidence            9986432  222   2   2489999999999998884

>PRK06855 aminotransferase; Validated

Probab=99.72  E-value=5.5e-16  Score=151.70  Aligned_cols=210  Identities=9%  Similarity=-0.071  Sum_probs=150.3

Q ss_pred             CCcccccccCC----CChHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHH
Q 018437           56 PRLNLASFVTT----WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        56 ~~~~l~~~~~~----~~~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (356)
                      +.+++..+.|.    .+++.+.+++.+.+.. ....|....+..++++.+.+++.+.+|++.+.   ..+++|+|+++++
T Consensus        33 ~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~---~~I~it~G~~~al  109 (433)
T PRK06855         33 KITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITP---DDIIFFNGLGDAI  109 (433)
T ss_pred             cccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCH---hHEEEcCcHHHHH
Confidence            33444444442    3456777777766543 33456666788999999999999988876422   3588999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH-HhhCCeeEEEEecC-CccccCHHHHHHHHh--hCceEE
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA-RYFEVELKEVKLEE-GYYVMNPVKAVELVD--ENTICV  206 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~-~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~--~~~~~v  206 (356)
                      ..++. +.++             ++.|++++|+|+.+..+. ...|+.++.+|+++ +++.+|+++|++++.  ++++++
T Consensus       110 ~~~~~-l~~~-------------Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i  175 (433)
T PRK06855        110 AKIYG-LLRR-------------EARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGI  175 (433)
T ss_pred             HHHHH-hcCC-------------CCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEE
Confidence            88764 3332             578999999998876543 34588888999874 347899999999996  357889


Q ss_pred             EEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCc-eEEEEcCCcCCC
Q 018437          207 AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLV-KSINVSGHKYGL  280 (356)
Q Consensus       207 ~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~-Ds~~~~~hK~l~  280 (356)
                      ++++|+||||.+-+   +++|.++|+++      ++|+++|.+|+.+...   ......+.  .+.- -.+..|..|.+.
T Consensus       176 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~------~~~II~De~Y~~l~~~---~~~~~sl~~~~~~~~~I~~~S~SK~~~  246 (433)
T PRK06855        176 LLINPDNPTGAVYPKEILREIVDIAREY------DLFIICDEIYNNIVYN---GKKTVPLSEVIGDVPGIALKGISKELP  246 (433)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccccccC---CCCCCCHHHHcCcCCeEEEecCccccC
Confidence            99999999999955   56788889999      9999999999876431   11111111  1111 244566899874


Q ss_pred             -CCcCeeEEEEe
Q 018437          281 -VYAGVGWVVWR  291 (356)
Q Consensus       281 -~P~g~g~l~~~  291 (356)
                       ....+|+++..
T Consensus       247 ~pGlRiG~ii~p  258 (433)
T PRK06855        247 WPGSRCGWIEVY  258 (433)
T ss_pred             CCcceEEEEEEe
Confidence             67899999874

>PLN02509 cystathionine beta-lyase

Probab=99.72  E-value=9.4e-17  Score=156.90  Aligned_cols=157  Identities=12%  Similarity=0.060  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH----H
Q 018437           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----A  171 (356)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~----~  171 (356)
                      ..+++.++++++.|.+.       .+++++|+.++..++ .+.++             +++||++.+.|.++...    +
T Consensus       134 t~~aLE~~lA~leg~e~-------ai~~~SG~aAi~~il-~ll~~-------------GD~VI~~~~~y~~t~~ll~~~l  192 (464)
T PLN02509        134 TRDALESLLAKLDKADR-------AFCFTSGMAALSAVT-HLIKN-------------GEEIVAGDDVYGGSDRLLSQVV  192 (464)
T ss_pred             HHHHHHHHHHHHhCCCE-------EEEeCcHHHHHHHHH-HHhCC-------------CCEEEEcCCchhhHHHHHHHHH
Confidence            45567777999988653       567778887764433 33221             57999999999887643    4


Q ss_pred             HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccccc
Q 018437          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (356)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~  251 (356)
                      ...|++++.++.      .|++++++++++++++|++++|+||+|.+.|+++|.++|+++      |+++++|++++.++
T Consensus       193 ~~~G~~v~~vd~------~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~------g~~lIVD~A~a~~~  260 (464)
T PLN02509        193 PRSGVVVKRVNT------TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQ------GALVLVDNSIMSPV  260 (464)
T ss_pred             HHCCeEEEEeCC------CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHc------CCEEEEECCccccc
Confidence            456888887753      268999999999999999999999999999999999999999      99999999987654


Q ss_pred             ccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCC
Q 018437          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTK  293 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~  293 (356)
                      .  ..   +.   ..++|.++.|.+||+.+|.+  .|+++++++
T Consensus       261 ~--~~---pl---~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~  296 (464)
T PLN02509        261 L--SR---PL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  296 (464)
T ss_pred             c--CC---hh---hcCCcEEEecCcccccCCCccceeEEEeccH
Confidence            3  11   11   24799999999999988876  788887654

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.72  E-value=9.4e-17  Score=154.31  Aligned_cols=156  Identities=13%  Similarity=-0.064  Sum_probs=119.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHH-hh---
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR-YF---  174 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~-~~---  174 (356)
                      ++.+.++++.|.+.       +++++||++|+..++.++..+             +++|+++.+.|........ +.   
T Consensus        55 ~le~~lA~l~g~~~-------v~~~~gg~~Ai~~~l~all~~-------------GD~Vl~~~p~y~~~~~~~~~~~~~~  114 (382)
T TIGR02080        55 LLQQALAELEGGAG-------AVVTNTGMSAIHLVTTALLGP-------------DDLLVAPHDCYGGTYRLLNALAKKG  114 (382)
T ss_pred             HHHHHHHHHhCCCc-------EEEEcCHHHHHHHHHHHHcCC-------------CCEEEEcCCCcHHHHHHHHHHHhhc
Confidence            34445888888542       789999999999998887542             5789999999976443332 22   


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      |+++..++      ..|++++++++++++++|++++|+||||.+.|+++|.++|+++      ++++++|++|..+..  
T Consensus       115 ~~~v~~~d------~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~------g~~vvvD~a~~~~~~--  180 (382)
T TIGR02080       115 CFRVLFVD------QGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAV------GAVVVVDNTFLSPAL--  180 (382)
T ss_pred             CeEEEEEC------CCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHc------CCEEEEECCCccccc--
Confidence            44554442      1378999999998999999999999999999999999999999      999999999975432  


Q ss_pred             cCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCCC
Q 018437          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKD  294 (356)
Q Consensus       255 ~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~~  294 (356)
                      ..   +.   ..++|.+..|++||++++.+  .|+++.++++
T Consensus       181 ~~---pl---~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~  216 (382)
T TIGR02080       181 QN---PL---ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQ  216 (382)
T ss_pred             CC---ch---hhCCCEEEeecceeccCCCCceeEEEEeCCHH
Confidence            11   11   13689999999999988776  7877776543

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.72  E-value=2.6e-16  Score=151.04  Aligned_cols=189  Identities=12%  Similarity=0.073  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HHHHHHHHHhc
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ  148 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~  148 (356)
                      +...+++.+.+..+... ...+    +.+++.+++++.+|.+.       .++|+|||+|+.+++.++ ..         
T Consensus        11 ~~e~~a~~~~~~~~~~~-~~g~----~~~~~e~~la~~~g~~~-------~v~~~sgt~aL~~~l~al~~~---------   69 (376)
T TIGR02379        11 GQELEYIAEAISEGKLS-GDGP----FSRRCETWLENRTGTKK-------ALLTPSCTAALEMAALLLDIQ---------   69 (376)
T ss_pred             HHHHHHHHHHHHcCCcc-CCcH----HHHHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHcCCC---------
Confidence            44466777777644321 1222    33455566888888764       789999999998888765 22         


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHH
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL  228 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~  228 (356)
                          .+++|+++.++|.++..++...|++++.++++++++.+|+++|++++++++++|+   +++++|...|+++|.++|
T Consensus        70 ----pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d~~~I~~la  142 (376)
T TIGR02379        70 ----PGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHRTKAIV---PVHYAGVACDMDTIMALA  142 (376)
T ss_pred             ----CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCCCCccCHHHHHHHH
Confidence                2579999999999999999999999999999876689999999999999998886   567789999999999999


Q ss_pred             HHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      +++      ++++++|++|+.+..  ........  ...+.++++.+.|.+.+....|++++.++++.
T Consensus       143 ~~~------~i~vIeDaa~~~g~~--~~~~~~g~--~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~  200 (376)
T TIGR02379       143 NKH------QLFVIEDAAQGVMST--YKGRALGS--IGHLGTFSFHETKNYTSGGEGGALLINDQAFI  200 (376)
T ss_pred             HHC------CCEEEEECccccCCc--cCCcccCC--CCCEEEEeCCCCCcCcccCCceEEEECCHHHH
Confidence            999      999999999986432  11111111  12234444444454543223577777765443

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.72  E-value=1.5e-16  Score=153.70  Aligned_cols=159  Identities=13%  Similarity=0.012  Sum_probs=121.6

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH-
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE-  168 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~-  168 (356)
                      .|....+|    +.++++.|.+.       .+++++|++|+..++.++..+             +++|+++.+.|.+.. 
T Consensus        63 ~p~~~~le----~~lA~l~g~~~-------~i~~ssG~~Ai~~~l~all~~-------------GD~Vi~~~~~y~~~~~  118 (398)
T PRK08249         63 NPTVQAFE----EKVRILEGAEA-------ATAFSTGMAAISNTLYTFLKP-------------GDRVVSIKDTYGGTNK  118 (398)
T ss_pred             ChHHHHHH----HHHHHHhCCCe-------EEEeCChHHHHHHHHHHhcCC-------------CCEEEEcCCchHHHHH
Confidence            34444454    45899999764       577788899998888776442             579999999998643 


Q ss_pred             ---HHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          169 ---KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       169 ---~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                         ..+...|++++.++.      .|+++++++++++|++|++++|+||+|.+.|+++|.++|+++      ++++++|+
T Consensus       119 ~~~~~~~~~Gi~v~~vd~------~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~------gi~livD~  186 (398)
T PRK08249        119 IFTEFLPRMGVDVTLCET------GDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKV------GALVVVDN  186 (398)
T ss_pred             HHHHHHhhCCeEEEEcCC------CCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHc------CCEEEEEC
Confidence               345567888776653      489999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTK  293 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~  293 (356)
                      +|+.++.  ..   +.   ..++|.++.|.+|+++++..  .|+++ .++
T Consensus       187 t~a~~~~--~~---~l---~~~~Divv~S~sK~l~g~~~~~gG~vv-~~~  227 (398)
T PRK08249        187 TFATPIN--QN---PL---ALGADLVIHSATKFLSGHADALGGVVC-GSK  227 (398)
T ss_pred             CcCcccc--CC---ch---hhCCCEEeccCceecCCCCCceEEEEE-CCH
Confidence            9985432  11   11   23789999999999876542  35554 443

>PRK09105 putative aminotransferase; Provisional

Probab=99.72  E-value=1.8e-16  Score=152.01  Aligned_cols=191  Identities=18%  Similarity=0.064  Sum_probs=139.4

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      ++++.+.+++.+..... ..|.. +.    ..++++.+++.+|++++     .+++|+|+++++.+++.++.++      
T Consensus        56 ~~~~~~~~a~~~~~~~~-~~Y~~-~~----~~~Lr~aia~~~~v~~e-----~I~it~Gs~~ai~~~~~~l~~~------  118 (370)
T PRK09105         56 GPSPAARDAAARSAALS-GRYDL-EL----EDDLRTLFAAQEGLPAD-----HVMAYAGSSEPLNYAVLAFTSP------  118 (370)
T ss_pred             CCCHHHHHHHHHHHHHh-cCCCC-ch----HHHHHHHHHHHhCcChh-----hEEEcCChHHHHHHHHHHHcCC------
Confidence            34577888877665422 22221 12    33556668888999863     4899999999999998877542      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHH
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~  226 (356)
                             +++|++++|+|..+...++..|++++.+|.+++ +.+|++++++. .+++++|++++|+||||.+.+.++|.+
T Consensus       119 -------gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~  189 (370)
T PRK09105        119 -------TAGLVTADPTYEAGWRAADAQGAPVAKVPLRAD-GAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEW  189 (370)
T ss_pred             -------CCEEEEeCCChHHHHHHHHHcCCeEEEecCCCC-CCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHH
Confidence                   578999999999999999999999999999764 88999999887 467889999999999999999999998


Q ss_pred             HHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEE-cCCcCCC-CCcCeeEEEEe
Q 018437          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV-SGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       227 i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~-~~hK~l~-~P~g~g~l~~~  291 (356)
                      +++.+.+    ++++++|++|..+..   .+ ...++.....+.+++ +..|.++ ....+|+++..
T Consensus       190 l~~~~~~----~~~lIvDEaY~~f~~---~~-s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~  248 (370)
T PRK09105        190 LLANKPA----GSVLLVDEAYIHFSD---AP-SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAAR  248 (370)
T ss_pred             HHHhCCC----CcEEEEECchHHhcc---Cc-chHHHHhhCCCEEEEecccHhhcCCccceeeeecC
Confidence            8875421    799999999965321   01 111221123455555 5667753 44569999864

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.72  E-value=6.8e-16  Score=150.47  Aligned_cols=195  Identities=16%  Similarity=0.109  Sum_probs=137.5

Q ss_pred             CCChHHHHHHHHHHhcccC--C-CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHH
Q 018437           66 TWMEPECDKLVMASINKNY--V-DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ  142 (356)
Q Consensus        66 ~~~~~~v~~~i~~~~~~~~--~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~  142 (356)
                      ++.++.+.+++.+++....  . ........ .....+.+.+++++|.+.       .+++++|+.|+++++.++.    
T Consensus        91 s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g-~r~~~le~~lA~l~gae~-------alvv~sg~aAi~l~l~~l~----  158 (454)
T TIGR00474        91 APLAEEAIEAVTDAARGYSNLEYDLETGKRG-SRYSHVEGLLCELTGAED-------ALVVNNNAAAVLLALNTLA----  158 (454)
T ss_pred             CCCCHHHHHHHHHHHhcccchhccccccccc-hHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHhC----
Confidence            3456788888887775321  0 11111112 223567788999999975       4667788889888775431    


Q ss_pred             HHHHhcCCCCCCCeEEecCCCcc------hHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcc-
Q 018437          143 QKRKEQGKPYDKPNIVTGANVQV------CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-  215 (356)
Q Consensus       143 ~~~~~~g~~~~~~~vi~s~~~h~------s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t-  215 (356)
                                .+++||++...|.      ++...++..|++++.++.+   ...|+++++++|+++|++|++++++|++ 
T Consensus       159 ----------~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~---~~~~l~dle~aI~~~T~lv~~~h~sN~~~  225 (454)
T TIGR00474       159 ----------KGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT---NRTHLKDYEDAITENTALLLKVHTSNYRI  225 (454)
T ss_pred             ----------CcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC---CCCCHHHHHHhcCcCCEEEEEEccCcccc
Confidence                      1578999987763      2344566779999888764   3468999999999999999999999984 


Q ss_pred             -c--ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc--cccCCCCcc--cccCCCceEEEEcCCcCCCCCcCeeEE
Q 018437          216 -G--EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA--PFLYPDLEW--DFRLPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       216 -G--~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~--~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                       |  .+.|+++|+++||++      |+++++|++.|...-  +|-.+..+.  +....++|.+++|+|||+++|. .|++
T Consensus       226 ~G~~~~~dl~~I~~la~~~------g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~-~G~i  298 (454)
T TIGR00474       226 VGFTEEVSIAELVALGREH------GLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ-AGII  298 (454)
T ss_pred             cCCCCCCCHHHHHHHHHHc------CCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe-EEEE
Confidence             5  478999999999999      999999987553210  010011111  2224589999999999998885 7988


Q ss_pred             EEeC
Q 018437          289 VWRT  292 (356)
Q Consensus       289 ~~~~  292 (356)
                      +.++
T Consensus       299 ~g~~  302 (454)
T TIGR00474       299 VGKK  302 (454)
T ss_pred             EECH
Confidence            8765

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.72  E-value=5.4e-16  Score=150.85  Aligned_cols=220  Identities=15%  Similarity=0.086  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHh-cccCCCcc------cCcchHHHHHHHHHHHHHHhCCCC
Q 018437           40 EAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASI-NKNYVDMD------EYPVTTELQNRCVNMIAHLFNTPV  112 (356)
Q Consensus        40 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~-~~~~~~~~------~~~~~~~le~~~~~~la~l~g~~~  112 (356)
                      .+|.+.+++..... ...+|+.. ..+..+|.+.+++.+.+ +.....+.      ..+...++|+.+++.+++++|.+.
T Consensus        14 ~~~~~~~~~~~~~~-~~~~~l~~-sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~   91 (416)
T PRK13034         14 DEVFAAINKELERQ-QDHLELIA-SENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDY   91 (416)
T ss_pred             HHHHHHHHHHHHHH-hcCeeecc-cccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCc
Confidence            55666666555433 22333322 12245688888887774 43222111      135567788767779999999874


Q ss_pred             CCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch-HHHHHHh--hCCee--EEEEecCCc
Q 018437          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC-WEKFARY--FEVEL--KEVKLEEGY  187 (356)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s-~~~~~~~--~G~~v--~~v~~~~~~  187 (356)
                            ..+++++|+.||..++.++..+             +++|+++...|.+ +...++.  .+...  +.++++..+
T Consensus        92 ------alv~~~SG~~A~~~~l~al~~~-------------GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  152 (416)
T PRK13034         92 ------ANVQPHSGSQANGAVYLALLKP-------------GDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLT  152 (416)
T ss_pred             ------eEEecCCcHHHHHHHHHHhcCC-------------CCEEEEcCccceeeeecCCcceeccceeeeEEccccccc
Confidence                  2345678899999999887543             6799999999977 2222221  12222  345555445


Q ss_pred             cccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCC
Q 018437          188 YVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP  266 (356)
Q Consensus       188 ~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  266 (356)
                      +.+|+++|++.+.. ++++|++..+  .+|...|+++|.++|+++      ++++++|+|++.++..  .+.....  ..
T Consensus       153 ~~~d~~~le~~l~~~~~klVi~~~~--~~g~~~dl~~l~~la~~~------g~~livD~Aha~G~~~--~g~~~~~--~~  220 (416)
T PRK13034        153 GLIDYDEVEELAKEHKPKLIIAGFS--AYPRELDFARFREIADEV------GALLMVDMAHIAGLVA--AGEHPNP--FP  220 (416)
T ss_pred             CCcCHHHHHHHHhhcCCeEEEECCC--ccccccCHHHHHHHHHHc------CCEEEEeCcccccCcc--cCCCCCC--CC
Confidence            78999999999854 6777765443  357888999999999999      9999999999876652  2221111  24


Q ss_pred             CceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          267 LVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       267 ~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      .+|.++.++||++.+|.| |+++.+++
T Consensus       221 ~~Di~~~s~~K~l~g~~G-G~v~~~~~  246 (416)
T PRK13034        221 HAHVVTTTTHKTLRGPRG-GMILTNDE  246 (416)
T ss_pred             CceEEEEeCcccCCCCCC-eEEEECcH
Confidence            699999999999988887 55555443

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.72  E-value=5.6e-16  Score=150.34  Aligned_cols=210  Identities=14%  Similarity=0.048  Sum_probs=151.9

Q ss_pred             cccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      +++..+.+..+ ++.+.+++.+.+......|....+..++++++.+++++.+|.+...   ..+++|+|+++|+..++.+
T Consensus        36 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~---~~i~~t~G~~~al~~~~~~  112 (402)
T PRK06107         36 VDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYAD---NEITVGGGAKQAIFLALMA  112 (402)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEeCCHHHHHHHHHHH
Confidence            45555555433 4677888877775444456555688899999999999998986422   3589999999999998876


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      +..+             ++.|+++.++|..+...+...|..++.+++++ +++.+|+++|++++.+++++|++++|+|||
T Consensus       113 ~~~~-------------gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPt  179 (402)
T PRK06107        113 TLEA-------------GDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPT  179 (402)
T ss_pred             hcCC-------------CCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCC
Confidence            5432             57899999999888888888888888888863 347899999999998889999999999999


Q ss_pred             cccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCC--ceEE-EEcCCcCCC-CCcCee
Q 018437          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPL--VKSI-NVSGHKYGL-VYAGVG  286 (356)
Q Consensus       216 G~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~--~Ds~-~~~~hK~l~-~P~g~g  286 (356)
                      |.+.+   +++|+++|++++     ++++++|.+|+.+..   .+.....+.  .+.  -..+ ..|.+|.++ ....+|
T Consensus       180 G~~~s~~~~~~l~~~a~~~~-----~~~iI~De~y~~l~~---~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG  251 (402)
T PRK06107        180 GAVYSRAELRALADVLLRHP-----HVLVLTDDIYDHIRF---DDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIG  251 (402)
T ss_pred             CcCcCHHHHHHHHHHHHHcC-----CeEEEEehhcccccc---CCCCCCCHHHhCcCccCCEEEEeccchhhcCccccee
Confidence            98865   566777788841     799999999986432   111111111  111  1233 445799874 445679


Q ss_pred             EEEEe
Q 018437          287 WVVWR  291 (356)
Q Consensus       287 ~l~~~  291 (356)
                      +++..
T Consensus       252 ~~~~~  256 (402)
T PRK06107        252 YAAGP  256 (402)
T ss_pred             eeecC
Confidence            88753

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.72  E-value=2e-15  Score=156.06  Aligned_cols=301  Identities=10%  Similarity=0.004  Sum_probs=197.6

Q ss_pred             ccccccccc-hhhhhcCC-CCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccc-cccCCCChHHHHHHHHH---Hhcc-cC
Q 018437           12 EILSSTFAS-RYVRAAIP-RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLA-SFVTTWMEPECDKLVMA---SINK-NY   84 (356)
Q Consensus        12 ~~~~~~~~~-~~~~~~~~-~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~v~~~i~~---~~~~-~~   84 (356)
                      ++|+++|.. .|..-.+. ...+|+ ++++.+++++++++..++......++ +|.+...++.+.+.+.+   ++.. .+
T Consensus        20 ~s~d~l~~~~iP~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~~p~~~TaytP   98 (939)
T TIGR00461        20 SDLNALIEQLVPPNILKRRPLQLEA-PSKEYEALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLENPGWYTAYTP   98 (939)
T ss_pred             CCHHHHhhccCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHHhCchhhhcCCC
Confidence            578889988 67655554 356766 57999999999988776543321122 22333445666644432   2332 46


Q ss_pred             CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 018437           85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (356)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h  164 (356)
                      ++++.+++..+...+.+.++++|+|++..     ...+..++|.+....+++.+...          .++.+|++++..|
T Consensus        99 yQ~EisQG~Le~l~e~Qt~i~eLtGm~~a-----NaSl~d~atA~aEa~~~a~~~~~----------~~~~~vlv~~~~h  163 (939)
T TIGR00461        99 YQPEISQGRLEALLNFQTVVSDLTGLPVA-----NASLLDEGTAAAEAMALSFNVSK----------KKANKFFVAKDLH  163 (939)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHCCChh-----hhhccchhhHHHHHHHHHHHhhc----------CCCCEEEECCCCC
Confidence            66777889999999999999999999962     24566677766554444443210          0136899999999


Q ss_pred             chHHHHH----HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCc
Q 018437          165 VCWEKFA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (356)
Q Consensus       165 ~s~~~~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~  240 (356)
                      +.....+    +..|++++.++.         ++|++.+  ++.++++++|++. |.+.|+++|.+++|++      |.+
T Consensus       164 P~~~~v~~t~a~~~g~~v~~~~~---------~~l~~~~--~~~~v~~q~Pn~~-G~ied~~~i~~~~h~~------gal  225 (939)
T TIGR00461       164 PQTKSVLHTRAKPFGIEVIVVDC---------SDIKKAV--DVFGCLLQYPATD-GSILDYKQLIDALHSH------KSL  225 (939)
T ss_pred             cchHHHHHHHHHhcCcEEEEEcH---------HHHhhcC--CEEEEEEECCCCC-eEEecHHHHHHHHHHc------CCE
Confidence            9866444    467888887743         3466655  5778888888766 9999999999999999      999


Q ss_pred             EEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC----CCcCeeEEEEeCCCCCccccccc-------c----C
Q 018437          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL----VYAGVGWVVWRTKDDLPDELVFH-------I----N  305 (356)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~----~P~g~g~l~~~~~~~~~~~~~~~-------~----~  305 (356)
                      +++++-.-....    ...+-   ..|+|.++-+.++|+.    +.++.|++.++++ + .+.++..       .    .
T Consensus       226 ~~~~ad~~al~l----l~~Pg---e~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~-l-~r~lPgrivG~s~D~~G~~~  296 (939)
T TIGR00461       226 VSVAADLMALTL----LTPPG---HYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDE-Y-NRKMPGRIVGVSKDALGNTA  296 (939)
T ss_pred             EEEEechHHhCC----cCCHH---HcCCcEEeeCCCccCCCCCCCCCceeeeeecHh-h-HhhCCCCceeEEecCCCCcc
Confidence            999654433222    11122   2389999666666632    2345899999864 2 1222110       0    0


Q ss_pred             C---CCCC-C-----CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          306 Y---LGSD-Q-----PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       306 ~---~~~~-~-----~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      |   ++.. +     .-.+-.||-++..++....++..+|.+|++++.++...+|+||+
T Consensus       297 ~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~  355 (939)
T TIGR00461       297 LRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILA  355 (939)
T ss_pred             ceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            0   0000 0     00011266666666667788999999999999999999998875

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.72  E-value=1.2e-15  Score=148.14  Aligned_cols=208  Identities=13%  Similarity=-0.027  Sum_probs=149.3

Q ss_pred             cccccccCCCC-hHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEeCChhHHHHHHH
Q 018437           58 LNLASFVTTWM-EPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA-VGVGTVGSSEAIMLAG  134 (356)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~Ggt~a~~~al  134 (356)
                      ++|..+.+... ++.+.+.+...... ....|....+...+++.+.+++.+.+|++.+.   . .+++|+|+++++.+++
T Consensus        36 ~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~---~~~I~it~G~~~al~~~~  112 (403)
T PRK08636         36 IDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDP---ETEVVATMGSKEGYVHLV  112 (403)
T ss_pred             EEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CCeEEECCChHHHHHHHH
Confidence            44554444432 34455555444432 23445556688899999999999988876421   2 4889999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHH----HHHHh---hCceEE
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKA----VELVD---ENTICV  206 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L----~~~i~---~~~~~v  206 (356)
                      .++.++             ++.|++++|+|+.+...++..|++++.||++. +++.+|++.|    +++++   .+++++
T Consensus       113 ~~l~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i  179 (403)
T PRK08636        113 QAITNP-------------GDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYV  179 (403)
T ss_pred             HHhCCC-------------CCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEE
Confidence            887653             57999999999999999999999999999853 3478998754    55554   367899


Q ss_pred             EEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCC---ceEEEEcCCcCC
Q 018437          207 AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPL---VKSINVSGHKYG  279 (356)
Q Consensus       207 ~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~---~Ds~~~~~hK~l  279 (356)
                      ++++|+||||.+-+   +++|.++|++|      ++++++|.+|+.+...   +.....+. ++.   ....+.|+.|.+
T Consensus       180 ~~~~P~NPTG~~~s~~~~~~l~~~a~~~------~~~II~De~Y~~l~~~---~~~~~~~~~~~~~~~~~i~~~S~SK~~  250 (403)
T PRK08636        180 VVNFPHNPTTATVEKSFYERLVALAKKE------RFYIISDIAYADITFD---GYKTPSILEVEGAKDVAVESYTLSKSY  250 (403)
T ss_pred             EEeCCCCCCCccCCHHHHHHHHHHHHHc------CcEEEEeccchhhccC---CCCCCChhcCCCccccEEEEEeccccc
Confidence            99999999999854   57788899999      9999999999875431   11001111 111   222345789987


Q ss_pred             -CCCcCeeEEEE
Q 018437          280 -LVYAGVGWVVW  290 (356)
Q Consensus       280 -~~P~g~g~l~~  290 (356)
                       .....+|+++.
T Consensus       251 ~~~GlRiG~iv~  262 (403)
T PRK08636        251 NMAGWRVGFVVG  262 (403)
T ss_pred             CCccceeeeeeC
Confidence             56688999875

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.71  E-value=1.6e-16  Score=153.25  Aligned_cols=157  Identities=18%  Similarity=0.142  Sum_probs=123.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch---
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC---  166 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s---  166 (356)
                      .|...++|+.    +++++|.+.       .+++++|+.|+..++.++..+             +++|+++.+.|.+   
T Consensus        58 ~p~~~~le~~----lA~l~g~~~-------av~~~sG~~Ai~~~l~al~~~-------------Gd~Vi~~~~~y~~t~~  113 (391)
T TIGR01328        58 NPTVSNLEGR----IAFLEGTEA-------AVATSSGMGAIAATLLTILKA-------------GDHLISDECLYGCTFA  113 (391)
T ss_pred             CchHHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEecCcchHHHH
Confidence            3455556554    899999874       678888999998888776432             5789999987653   


Q ss_pred             -HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          167 -WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       167 -~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                       +...+...|++++.++++      |++++++++++++++|++++|+||+|.+.|+++|.++|+++      ++++++|+
T Consensus       114 ~~~~~~~~~G~~~~~vd~~------d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~------gi~livD~  181 (391)
T TIGR01328       114 LLEHALTKFGIQVDFINMA------IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQ------GVKVIVDN  181 (391)
T ss_pred             HHHHHHhcCCeEEEEECCC------CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEEC
Confidence             445566678888888764      78999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEE
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVW  290 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~  290 (356)
                      +|+.+..  ..   +.   ..++|.++.|++|+++++.+  .|+++.
T Consensus       182 a~a~~~~--~~---~~---~~g~Divv~S~sK~lgg~g~~~gG~v~~  220 (391)
T TIGR01328       182 TFATPML--TN---PV---ALGVDVVVHSATKYIGGHGDVVAGLICG  220 (391)
T ss_pred             CCchhcc--CC---ch---hcCCCEEEccccccccCCCCceEEEEEc
Confidence            9975433  11   11   24789999999999977654  466544

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.71  E-value=1.3e-15  Score=147.50  Aligned_cols=210  Identities=16%  Similarity=0.077  Sum_probs=147.3

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|..+.++. +++.+.+++.+... ....|....+..++++++.+++.+ .|...+   ...+++|+|+++++.+++.+
T Consensus        33 i~l~~~~~~~~~~~~~~~a~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~---~~~i~~t~G~~~al~~~~~~  107 (397)
T PRK07568         33 YHLNIGQPDIKTPEVFFEAIKNYDE-EVLAYSHSQGIPELREAFAKYYKK-WGIDVE---PDEILITNGGSEAILFAMMA  107 (397)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHhc-CCcCcCCCCCCHHHHHHHHHHHHH-hCCCCC---cceEEEcCChHHHHHHHHHH
Confidence            3454544543 45677787766543 333444555777888887777763 444321   13488999999999988877


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-Cccc-cCHHHHHHHHhhCceEEEEecCCCc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYV-MNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~-~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      +.++             +++|+++.+.|..+...++..|++++.++++. +++. .|+++|++++++++++|++++|+||
T Consensus       108 l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NP  174 (397)
T PRK07568        108 ICDP-------------GDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNP  174 (397)
T ss_pred             hcCC-------------CCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCC
Confidence            6432             57899999999888888889999999999863 2234 3689999999888999999999999


Q ss_pred             ccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC--ccccc-CCCceEEEEcCCcCCC-CCcCeeE
Q 018437          215 TGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWDFR-LPLVKSINVSGHKYGL-VYAGVGW  287 (356)
Q Consensus       215 tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~  287 (356)
                      ||.+.   ++++|.++|+++      ++++++|++|+.+...  ....  ...+. ...--.+.-|.+|.++ ....+|+
T Consensus       175 tG~~~~~~~~~~i~~~~~~~------~~~ii~De~y~~~~~~--~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~  246 (397)
T PRK07568        175 TGVVYTKEELEMLAEIAKKH------DLFLISDEVYREFVYD--GLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGC  246 (397)
T ss_pred             CCccCCHHHHHHHHHHHHHC------CcEEEEeccchhcccC--CCCccChhhcCCCcCCEEEEecchhhccCCCcceEE
Confidence            99986   478899999999      9999999999875431  1100  01111 0111234457899875 3578999


Q ss_pred             EEEeCC
Q 018437          288 VVWRTK  293 (356)
Q Consensus       288 l~~~~~  293 (356)
                      ++..++
T Consensus       247 ~~~~~~  252 (397)
T PRK07568        247 LISKNK  252 (397)
T ss_pred             EecCCH
Confidence            887543

>PRK09148 aminotransferase; Validated

Probab=99.71  E-value=1.7e-15  Score=147.02  Aligned_cols=213  Identities=15%  Similarity=-0.017  Sum_probs=149.5

Q ss_pred             CCCCcccccccCCC-ChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHH
Q 018437           54 GNPRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (356)
Q Consensus        54 ~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (356)
                      +...++|..+.+.. +++.+.+.+.+.+... ...|....+..++++.+.+++.+.+|.+.+.  ...+++|+|+++++.
T Consensus        29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~~I~it~G~~~al~  106 (405)
T PRK09148         29 GADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNP--DTQVVATLGSKEGFA  106 (405)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEcCChHHHHH
Confidence            34444555555543 3456666676665422 2345555678899999999998887875321  114899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEec
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      .++.++.++             ++.|+++.|+|..+...+...|++++.+|++.+ .+..+++++.+...+++++|++++
T Consensus       107 ~~~~~l~~~-------------gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~  173 (405)
T PRK09148        107 NMAQAITAP-------------GDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNY  173 (405)
T ss_pred             HHHHHhcCC-------------CCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeC
Confidence            998887543             578999999999999999999999999999753 244455444444446789999999


Q ss_pred             CCCcccccCCH---HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C---CCceEEEEcCCcCCC-CC
Q 018437          211 GSTLTGEFEDV---KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L---PLVKSINVSGHKYGL-VY  282 (356)
Q Consensus       211 ~~~~tG~~~~i---~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~---~~~Ds~~~~~hK~l~-~P  282 (356)
                      |+||||.+-+.   ++|.++|+++      ++++++|++|+.+..+   ......+. .   .....+.-|+.|.++ ..
T Consensus       174 P~NPtG~~~s~~~l~~l~~~a~~~------~~~ii~De~Y~~~~~~---~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pG  244 (405)
T PRK09148        174 PSNPTAYVADLDFYKDVVAFAKKH------DIIILSDLAYSEIYFD---GNPPPSVLQVPGAKDVTVEFTSMSKTFSMAG  244 (405)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHc------CeEEEEeccchhhhcC---CCCCCChhhCCCccCcEEEEeccccccCCcc
Confidence            99999999765   6788899999      9999999999875431   11111111 1   122334677899875 44


Q ss_pred             cCeeEEEE
Q 018437          283 AGVGWVVW  290 (356)
Q Consensus       283 ~g~g~l~~  290 (356)
                      ..+|+++.
T Consensus       245 lR~G~~v~  252 (405)
T PRK09148        245 WRMGFAVG  252 (405)
T ss_pred             hheeeeeC
Confidence            67999975

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.71  E-value=3.2e-16  Score=151.57  Aligned_cols=159  Identities=14%  Similarity=0.032  Sum_probs=123.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc----c
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ----V  165 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h----~  165 (356)
                      .|....+|+.    ++++.|.+.       .+++++|+.|+..++.++..+             +++|+++...|    .
T Consensus        69 ~p~~~~le~~----lA~l~g~~~-------al~~~sG~~Ai~~~l~all~~-------------Gd~Vl~~~~~~~~t~~  124 (403)
T PRK07810         69 NPTVSMFEER----LRLIEGAEA-------CFATASGMSAVFTALGALLGA-------------GDRLVAARSLFGSCFV  124 (403)
T ss_pred             CchHHHHHHH----HHHHhCCCc-------EEEECChHHHHHHHHHHHhCC-------------CCEEEEccCCcchHHH
Confidence            3455555554    899999764       788899999999888776432             57899887555    3


Q ss_pred             hHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          166 CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .+...++..|+++++++.+      |++++++++++++++|++.+|+||+|.+.|+++|.++|+++      ++++++|+
T Consensus       125 ~~~~~~~~~G~~v~~vd~~------d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~------g~~vivD~  192 (403)
T PRK07810        125 VCNEILPRWGVETVFVDGE------DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAA------GAKVVLDN  192 (403)
T ss_pred             HHHHHHHHcCcEEEEECCC------CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEEC
Confidence            3456667789999988642      88999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      +|+.++.  ..   +.   ..++|.++.|.||+++++..  .|+++.++
T Consensus       193 a~a~~~~--~~---~~---~~gaDivv~S~tK~l~g~g~~~gG~v~~~~  233 (403)
T PRK07810        193 VFATPLL--QR---GL---PLGADVVVYSGTKHIDGQGRVLGGAILGDR  233 (403)
T ss_pred             CCCcccc--CC---hh---hcCCcEEEccCCceecCCcCceeEEEEeCh
Confidence            9975433  11   11   23789999999999866432  57776543

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.71  E-value=1.1e-16  Score=153.30  Aligned_cols=160  Identities=17%  Similarity=0.059  Sum_probs=126.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++-|.+.       .+++++|+.|+..++.++.++             +++||++...|.....
T Consensus        61 nPt~~~le~~----la~LEg~~~-------a~~~~SGmaAi~~~~~~ll~~-------------GD~Vv~~~~~Yg~t~~  116 (395)
T PRK08114         61 TLTHFSLQEA----MCELEGGAG-------CALYPCGAAAVANAILAFVEQ-------------GDHVLMTGTAYEPTQD  116 (395)
T ss_pred             ChhHHHHHHH----HHHHhCCCe-------EEEEhHHHHHHHHHHHHHcCC-------------CCEEEEeCCCcHHHHH
Confidence            4666667665    888888764       677888999999988877542             5789999888866554


Q ss_pred             HH----HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 FA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .+    +..|+++++++.      .|.++++++++++|++|++.+++||+|.+.||++|+++||++..    +++++||+
T Consensus       117 l~~~~l~~~Gi~v~~vd~------~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~----g~~lvVDn  186 (395)
T PRK08114        117 FCSKILSKLGVTTTWFDP------LIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNP----DAVIMIDN  186 (395)
T ss_pred             HHHHHHHhcCcEEEEECC------CCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCC----CCEEEEEC
Confidence            44    556999888764      26788999999999999999999999999999999999999810    39999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc--CeeEEEEe
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWR  291 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l~~~  291 (356)
                      +++.++.  +      +....|+|.+..|.|||++++.  +.|+++.+
T Consensus       187 T~a~p~~--~------~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~  226 (395)
T PRK08114        187 TWAAGVL--F------KALDFGIDISIQAGTKYLVGHSDAMIGTAVAN  226 (395)
T ss_pred             CCccccc--c------CHHHcCCcEEEEcCcccccCCCcceeEEEEcC
Confidence            9986443  1      2223489999999999999995  77866543

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.71  E-value=7.5e-16  Score=146.68  Aligned_cols=190  Identities=13%  Similarity=-0.017  Sum_probs=133.8

Q ss_pred             ChHHHHHHHHHHhcccCCCcc---cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      .++.+.+++.+++......+.   ...+...+..++++.+++++|.+.       .+++++|++++..++.++..+    
T Consensus        31 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~-------~i~~~~G~~~~~~~l~~~~~~----   99 (360)
T TIGR00858        31 SHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEA-------ALLFSSGYLANVGVISALVGK----   99 (360)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCC-------EEEECchHHHHHHHHHHhCCC----
Confidence            347788888877754222211   112334556677888999888542       455555678877766655321    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh----CceEEEEecCCCcccccCC
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFED  220 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~  220 (356)
                               +++|+++.++|.++...++..|++++.++.      +|++.|++.+++    ++++|++.+++|++|.+.|
T Consensus       100 ---------gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~  164 (360)
T TIGR00858       100 ---------GDLILSDALNHASLIDGCRLSGARVRRYRH------NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP  164 (360)
T ss_pred             ---------CCEEEEEccccHHHHHHHHhcCCceEEecC------CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcC
Confidence                     578999999999999999999999887763      478899998864    4678888889999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCC-C-cccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-L-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      +++|.++|+++      ++++++|++|+.+..+..... . ...+...+.|.+..+++|+++ +.| |+++.+
T Consensus       165 ~~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~g-G~~~~~  229 (360)
T TIGR00858       165 LPQLVALAERY------GAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG-SYG-AYVAGS  229 (360)
T ss_pred             HHHHHHHHHHc------CcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhh-ccC-cEEEcC
Confidence            99999999999      999999999975443211000 0 011211356788889999874 555 777653

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.70  E-value=2.9e-16  Score=152.01  Aligned_cols=159  Identities=16%  Similarity=0.120  Sum_probs=123.1

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch---
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC---  166 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s---  166 (356)
                      .|....+|    +.++++.|.+.       .+++++|+.|+.+++.++..+             +++|+++.+.|..   
T Consensus        64 ~p~~~~le----~~lA~l~g~~~-------~i~~~sG~~Al~~~l~~ll~~-------------Gd~Viv~~~~y~~t~~  119 (403)
T PRK07503         64 NPTLALLE----QRMASLEGGEA-------AVALASGMGAITATLWTLLRP-------------GDEVIVDQTLYGCTFA  119 (403)
T ss_pred             CchHHHHH----HHHHHHhCCCc-------EEEEcCHHHHHHHHHHHHcCC-------------CCEEEEccCccchHHH
Confidence            34455555    45899999864       577888899988888765332             5789999887754   


Q ss_pred             -HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          167 -WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       167 -~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                       +...+...|++++.++++      |+++|+++++++|++|++.+|+||+|.+.|+++|.++|+++      |+++++|+
T Consensus       120 ~~~~~~~~~G~~v~~vd~~------d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~------gi~lIvD~  187 (403)
T PRK07503        120 FLHHGLGEFGVTVRHVDLT------DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGA------GAKVVVDN  187 (403)
T ss_pred             HHHHHHhhCCEEEEEeCCC------CHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHc------CCEEEEEC
Confidence             334556678888888763      68999999998999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTK  293 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~  293 (356)
                      +|+.+..   .  .+..   .++|.++.|.+|+++++.+  .|+++ .++
T Consensus       188 a~a~~~~---~--~~l~---~g~Di~v~S~tK~l~g~gd~~gG~v~-~~~  228 (403)
T PRK07503        188 TYCTPYL---Q--RPLE---LGADLVVHSATKYLGGHGDITAGLVV-GGK  228 (403)
T ss_pred             CCccccc---C--Cchh---hCCCEEEccccccccCCCceeEEEEE-cCH
Confidence            9975432   1  1121   3789999999999976644  67776 443

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.70  E-value=8.1e-16  Score=148.20  Aligned_cols=202  Identities=14%  Similarity=0.019  Sum_probs=141.9

Q ss_pred             CCCCccccccc-CCC-ChHHHHHHHHHHhccc---CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhH
Q 018437           54 GNPRLNLASFV-TTW-MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (356)
Q Consensus        54 ~~~~~~l~~~~-~~~-~~~~v~~~i~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (356)
                      |+..+++.+.. +.. ++|.+.+++.+.+...   ...+....+...+.+++.+++++++|.+.      ..++| +|++
T Consensus        32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~------~i~~~-sG~~  104 (385)
T TIGR01825        32 GKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEA------ALVFQ-SGFN  104 (385)
T ss_pred             CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCc------EEEEC-cHHH
Confidence            33334444432 233 4577888877776542   22333455778889999999999999653      24455 5588


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh----Cce
Q 018437          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTI  204 (356)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~  204 (356)
                      ++..++.++..+             +++|+++.++|.++...+...|++++.++      .+|++++++.+.+    +++
T Consensus       105 a~~~a~~~~~~~-------------gd~vi~~~~~~~~~~~~~~~~g~~~~~~~------~~d~~~l~~~l~~~~~~~~~  165 (385)
T TIGR01825       105 TNQGVLSALLRK-------------GDIVLSDELNHASIIDGLRLTKATKKIYK------HADMDDLDRVLRENPSYGKK  165 (385)
T ss_pred             HHHHHHHHhCCC-------------CCEEEEEccccHHHHHHHHhcCCceEEeC------CCCHHHHHHHHHhhccCCCe
Confidence            888777766432             56899999999999888888888776543      4678888887764    578


Q ss_pred             EEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccC-CC-CcccccCCCceEEEEcCCcCCCCC
Q 018437          205 CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PD-LEWDFRLPLVKSINVSGHKYGLVY  282 (356)
Q Consensus       205 ~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~-~~~~~~~~~~Ds~~~~~hK~l~~P  282 (356)
                      +|++....|++|.+.|+++|.++|++|      ++++++|++|+.+..+... .. ...++. ...|.+..+.+|+++.+
T Consensus       166 ~v~~~~v~~~tG~~~~~~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~  238 (385)
T TIGR01825       166 LIVTDGVFSMDGDVAPLPEIVELAERY------GAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVV  238 (385)
T ss_pred             EEEEecCCcCCCCccCHHHHHHHHHHh------CCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcC
Confidence            888888899999999999999999999      9999999999765442100 00 011222 46788888999998543


Q ss_pred             cCeeEEEE
Q 018437          283 AGVGWVVW  290 (356)
Q Consensus       283 ~g~g~l~~  290 (356)
                       | |+++.
T Consensus       239 -g-G~~~~  244 (385)
T TIGR01825       239 -G-GYAAG  244 (385)
T ss_pred             -C-CEEec
Confidence             3 66654

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.70  E-value=3.1e-16  Score=150.88  Aligned_cols=153  Identities=18%  Similarity=0.041  Sum_probs=120.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhh
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYF  174 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~  174 (356)
                      ++.+.+++++|.+.       .+++++|++|+..++.++..+             +++|+++.+.|.+    +...+..+
T Consensus        58 ~le~~la~l~g~~~-------~~~~~sG~~Ai~~al~al~~~-------------Gd~Vl~~~~~~~~t~~~~~~~~~~~  117 (380)
T TIGR01325        58 AFEERIAALEGAER-------AVATATGMSAIQAALMTLLQA-------------GDHVVASRSLFGSTVGFISEILPRF  117 (380)
T ss_pred             HHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEecCCcchHHHHHHHHHHHh
Confidence            34455889999864       678999999999998876542             4689988877754    44566778


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      |++++.++.+      |++++++++++++++|+++.|+||+|.+.|+++|.++|+++      ++++++|++|+.++.  
T Consensus       118 g~~v~~v~~~------d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~------gi~livD~a~~~~~~--  183 (380)
T TIGR01325       118 GIEVSFVDPT------DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAI------GALLVVDNVFATPVL--  183 (380)
T ss_pred             CCEEEEECCC------CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHc------CCEEEEECCCccccc--
Confidence            9998888753      68999999988999999999999999999999999999999      999999999975432  


Q ss_pred             cCCCCcccccCCCceEEEEcCCcCCCCCc-Ce-eEEEEe
Q 018437          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYA-GV-GWVVWR  291 (356)
Q Consensus       255 ~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~-g~l~~~  291 (356)
                      ..   +.   ..++|.++.|.+|+++++. .. |+++.+
T Consensus       184 ~~---pl---~~g~Divv~S~sK~l~g~g~~~gG~vv~~  216 (380)
T TIGR01325       184 QQ---PL---KLGADVVVYSATKHIDGQGRVMGGVIAGS  216 (380)
T ss_pred             CC---ch---hhCCCEEEeeccceecCCCCeEEEEEEeC
Confidence            11   12   2378999999999987763 23 566543

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.70  E-value=5.7e-16  Score=153.08  Aligned_cols=216  Identities=13%  Similarity=0.050  Sum_probs=143.9

Q ss_pred             ccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHH-HHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           59 NLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIA-HLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        59 ~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la-~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      +++.+.+..+ ++.+.+++ +.+..+  +|....+..++.+++.+++. +.++..........+++|+|+++++.+++.+
T Consensus       104 ~l~~g~p~~~~~~~v~e~~-~~~~~~--~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~a  180 (527)
T PRK09275        104 SYVRDQLGFDADEFVYELV-DGIIGD--NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDS  180 (527)
T ss_pred             hhcCCCCCCCCCHHHHHHH-HHHhcC--CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHH
Confidence            3444444443 45666754 343322  46666788888888887554 4333321000113589999999999999886


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEe--cC-CccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL--EE-GYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~--~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      +....        .-..+++|+++.|+|..|...+++.|.+++.|++  ++ ++|++|+++|++++++++++|++++|+|
T Consensus       181 L~~~~--------ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~N  252 (527)
T PRK09275        181 LKENG--------LLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSN  252 (527)
T ss_pred             Hhhhh--------cCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcC
Confidence            42210        0012579999999999999999988766555555  43 3589999999999999999999999999


Q ss_pred             cccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC-CCCcCeeEEE
Q 018437          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG-LVYAGVGWVV  289 (356)
Q Consensus       214 ~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l-~~P~g~g~l~  289 (356)
                      |||.+-+   +++|+++|+++..    ++|+++|++|+.+...+..   .... .+.--.+..|..|.+ ++.+.+|+++
T Consensus       253 PTG~v~s~e~l~~I~~ia~~~~~----~l~II~DEvY~~f~~~~~s---~~~~-~~~~~I~v~SfSK~f~mtG~RlG~i~  324 (527)
T PRK09275        253 PPSVAMSDESLEKIADIVNEKRP----DLMIITDDVYGTFVDDFRS---LFAV-LPYNTILVYSFSKYFGATGWRLGVIA  324 (527)
T ss_pred             CcCCCCCHHHHHHHHHHHHhcCC----CcEEEECCCChhhcccccC---HHHh-CCCCEEEEeehhhhccCcHhHHhhhh
Confidence            9999965   6778888854311    8999999999875432110   0111 121223445678976 4678899998


Q ss_pred             EeCC
Q 018437          290 WRTK  293 (356)
Q Consensus       290 ~~~~  293 (356)
                      ..++
T Consensus       325 ~~~~  328 (527)
T PRK09275        325 LHED  328 (527)
T ss_pred             cCch
Confidence            7543

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.70  E-value=3.6e-16  Score=149.23  Aligned_cols=191  Identities=16%  Similarity=0.139  Sum_probs=142.6

Q ss_pred             CChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      ++++.+.+++.+++... ...|.. ++..    ++++.+++.+|.+.+    ..+++|+|+++++..++.++.++     
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~----~lr~~ia~~~~~~~~----~~I~~t~G~~~~i~~~~~~~~~~-----  104 (356)
T PRK04870         39 RLPAELRAELGERLAEVALNRYPD-PRAA----ALKAALRAAMGVPAG----ADVLLGNGSDELIQLLALACAKP-----  104 (356)
T ss_pred             CCCHHHHHHHHHHhhccccccCCC-CCHH----HHHHHHHHHhCcCCC----CcEEEcCCHHHHHHHHHHHhcCC-----
Confidence            45678889888777532 233333 4444    455557888888642    24889999999998888776542     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHH
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLL  224 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I  224 (356)
                              +++|+++.++|..+...++..|++++.+|++++ +.+|+++|++++.+ ++++|++++|+||||.+.+.+++
T Consensus       105 --------gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~-~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~  175 (356)
T PRK04870        105 --------GATVLAPEPGFVMYRMSAKLAGLEFVGVPLTAD-FTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADV  175 (356)
T ss_pred             --------CCEEEECCCCHHHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHH
Confidence                    578999999999999999999999999999864 89999999999964 78999999999999999999999


Q ss_pred             HHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          225 HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       225 ~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      .++++..      ++++++|++|..+..    ......+. ..+ ..+..|..|++.....+|+++..
T Consensus       176 ~~i~~~~------~~~ii~De~y~~~~~----~~~~~~~~~~~~-vi~~~S~SK~~~~GlRiG~~i~~  232 (356)
T PRK04870        176 ERIIEAA------PGLVVVDEAYQPFAG----DSWLPRLARFPN-LLVMRTVSKLGLAGLRLGYLAGH  232 (356)
T ss_pred             HHHHHHC------CCEEEEECCchhhcC----cchHHHHhhCCC-EEEEecchhhhhHHHhhhhhhCC
Confidence            9999988      889999999976432    11000111 122 34566789965445568988764

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.70  E-value=8.6e-16  Score=146.66  Aligned_cols=200  Identities=11%  Similarity=0.087  Sum_probs=140.4

Q ss_pred             cccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|....++ ++++.+.+++.+.+.... .|. .++.    .++++.+++.+|++++     .+++|+|+++++..++.+
T Consensus        23 i~l~~~~~~~~~p~~~~~a~~~~~~~~~-~y~-~~~~----~~lr~~ia~~~~~~~~-----~i~it~Ga~~~l~~~~~~   91 (356)
T PRK08056         23 LDFSANINPLGMPVSLKRAIIDNLDCAE-RYP-DVEY----RHLHQALARHHQVPAS-----WILAGNGETESIFAVVSG   91 (356)
T ss_pred             EEeccccCCCCCCHHHHHHHHHHHHhcc-cCc-CccH----HHHHHHHHHHhCcChh-----hEEECCCHHHHHHHHHHH
Confidence            344443333 345677888776554321 221 1222    3566678888898763     488999999999888776


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      + .+             + .+++..|++..+...++..|++++.+|+++ +++.+| +++++.+.+++++|++++|+|||
T Consensus        92 l-~~-------------g-~viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPT  155 (356)
T PRK08056         92 L-KP-------------R-RAMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPT  155 (356)
T ss_pred             h-CC-------------C-CEEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCC
Confidence            4 21             2 467778899889999999999999999964 346677 45556677788999999999999


Q ss_pred             cccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       216 G~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      |.+.+   +++|+++|+++      ++++++|++|..+...  .......+....-..+..|++|+++ ....+|+++..
T Consensus       156 G~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~  227 (356)
T PRK08056        156 GLLPERQLLQAIAERCKSL------NIALILDEAFIDFIPD--ETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNS  227 (356)
T ss_pred             CCCCCHHHHHHHHHHHHhc------CCEEEEecchhccCCc--chHHHHHhccCCCEEEEEechhhccCcchhheeeecC
Confidence            99977   78899999999      9999999999765421  0000001111234567788999987 56789999875


Q ss_pred             C
Q 018437          292 T  292 (356)
Q Consensus       292 ~  292 (356)
                      +
T Consensus       228 ~  228 (356)
T PRK08056        228 D  228 (356)
T ss_pred             C
Confidence            4

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.70  E-value=3.2e-16  Score=151.64  Aligned_cols=162  Identities=19%  Similarity=0.123  Sum_probs=126.1

Q ss_pred             cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH
Q 018437           89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE  168 (356)
Q Consensus        89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~  168 (356)
                      ..|...++|+.    +++++|.+.       .++++||+.|+..++.++.++             +++|+++.+.|.+..
T Consensus        62 ~~p~~~~Le~~----iA~~~g~~~-------~l~~~sG~~Ai~~al~~ll~~-------------Gd~Vl~~~~~y~~~~  117 (400)
T PRK06234         62 GNPTSTEVENK----LALLEGGEA-------AVVAASGMGAISSSLWSALKA-------------GDHVVASDTLYGCTF  117 (400)
T ss_pred             CCccHHHHHHH----HHHHhCCCc-------EEEEcCHHHHHHHHHHHHhCC-------------CCEEEEecCccchHH
Confidence            35566666665    888888653       688999999998888776542             578999998886643


Q ss_pred             ----HHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEe
Q 018437          169 ----KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (356)
Q Consensus       169 ----~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD  244 (356)
                          ..++..|++++.++.+      |++++++++++++++|++++|+||+|.+.|+++|.++|++++.    ++++++|
T Consensus       118 ~~~~~~~~~~G~~v~~vd~~------d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~----~i~livD  187 (400)
T PRK06234        118 ALLNHGLTRYGVEVTFVDTS------NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNK----ECLVFVD  187 (400)
T ss_pred             HHHHHHHhhCCeEEEEECCC------CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCC----CCEEEEE
Confidence                4456789988888753      7899999999999999999999999999999999999999521    7999999


Q ss_pred             cccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      ++|+.+..  ..   +.   ..++|.++.|.+|++.++..  .|+++.++
T Consensus       188 ea~~~~~~--~~---~l---~~g~Divv~S~sK~l~g~g~~~gG~v~~~~  229 (400)
T PRK06234        188 NTFCTPYI--QR---PL---QLGADVVVHSATKYLNGHGDVIAGFVVGKE  229 (400)
T ss_pred             CCCCchhc--CC---ch---hhCCcEEEeeccccccCCCCceeEEEEecH
Confidence            99986543  11   11   13789999999999976643  58877654

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.70  E-value=4e-16  Score=149.07  Aligned_cols=192  Identities=15%  Similarity=0.049  Sum_probs=140.3

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.++...  +....+..++    ++.+++.+|+++     ..+++|+|+++++..++.++.++       
T Consensus        43 ~~~~v~~a~~~~~~~~~--~~p~~g~~~l----r~~ia~~~~~~~-----~~i~~t~G~~~~l~~~~~~~~~~-------  104 (359)
T PRK03158         43 PSPKVKEAIAAHLDELA--LYPDGYAPEL----RTKVAKHLGVDE-----EQLLFGAGLDEVIQMISRALLNP-------  104 (359)
T ss_pred             CCHHHHHHHHHHHHHhh--cCCCCcHHHH----HHHHHHHhCCCH-----HHEEECCCHHHHHHHHHHHHhCC-------
Confidence            45678888877665322  2222344444    455777778865     34899999999998887776432       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i  227 (356)
                            +++|+++.|+|..+...+...|++++.+|++ + +.+|++++++++++++++|++++|+||||.+.+.++|.++
T Consensus       105 ------gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~-~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~  176 (359)
T PRK03158        105 ------GTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-D-GGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSF  176 (359)
T ss_pred             ------CCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-C-CCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence                  5789999999999999999999999999997 3 7899999999998889999999999999999999999999


Q ss_pred             HHHhhhccCCCCcEEEecccccccccccCCCC-ccc-ccCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWD-FRLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~-~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ++....    ++++++|++|..+..+  .... ... +....-..+..++.|.++ ....+|+++..
T Consensus       177 ~~~~~~----~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~  237 (359)
T PRK03158        177 LESVPS----HVLVVLDEAYYEYVTA--EDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIAS  237 (359)
T ss_pred             HHhCCC----CcEEEEECchHhhcCC--cccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCC
Confidence            987421    8999999999875431  1100 001 111122455567889875 34567988764

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.69  E-value=3.2e-16  Score=150.40  Aligned_cols=155  Identities=17%  Similarity=0.042  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch-HH---HHHHhh
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC-WE---KFARYF  174 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s-~~---~~~~~~  174 (356)
                      ++.+.++++.|.+.       .++++.|+.++..++ .+..+             +++|+++.+.|.+ +.   ..+...
T Consensus        54 ~Le~~lA~l~g~~~-------~~~~~sG~aai~~~~-~~l~~-------------Gd~Viv~~~~y~~~~~~~~~~~~~~  112 (377)
T PRK07671         54 ALEELIAVLEGGHA-------GFAFGSGMAAITAVM-MLFSS-------------GDHVILTDDVYGGTYRVMTKVLNRF  112 (377)
T ss_pred             HHHHHHHHHhCCCc-------eEEeCCHHHHHHHHH-HHhCC-------------CCEEEECCCccchHHHHHHHHHhcC
Confidence            44555999999864       456666676665543 33221             5789999998873 33   234456


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      |++++.++.      .|++++++++++++++|++++|+||+|.+.|+++|.++|+++      ++++++|++|+....  
T Consensus       113 G~~v~~v~~------~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~------g~~lvvD~a~~~~~~--  178 (377)
T PRK07671        113 GIEHTFVDT------SNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEK------GLLTIVDNTFMTPYW--  178 (377)
T ss_pred             CeEEEEECC------CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCCcccc--
Confidence            888888763      278999999999999999999999999999999999999999      999999999975332  


Q ss_pred             cCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCCC
Q 018437          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKD  294 (356)
Q Consensus       255 ~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~~  294 (356)
                       .  .+.   ..++|.++.|.+|++++|.+  .|++++++++
T Consensus       179 -~--~p~---~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~  214 (377)
T PRK07671        179 -Q--SPI---SLGADIVLHSATKYLGGHSDVVAGLVVVNSPE  214 (377)
T ss_pred             -C--Chh---hhCCeEEEecCcccccCCccceeEEEEeCcHH
Confidence             1  112   23789999999999988864  5777766543

>PLN02242 methionine gamma-lyase

Probab=99.69  E-value=2.1e-16  Score=153.45  Aligned_cols=157  Identities=17%  Similarity=0.034  Sum_probs=122.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|...++|+    .+++++|.+.       .++++||++|+..++.++.++             +++|+++.+.|..+..
T Consensus        75 ~Pt~~~LE~----~lA~l~g~~~-------~l~~~sG~~Ai~~al~al~~~-------------GD~Vl~~~~~Y~~~~~  130 (418)
T PLN02242         75 NPTVLNLGR----QMAALEGTEA-------AYCTASGMSAISSVLLQLCSS-------------GGHVVASNTLYGGTHA  130 (418)
T ss_pred             ChhHHHHHH----HHHHHhCCCe-------EEEEccHHHHHHHHHHHHhCC-------------CCEEEEcCCcHHHHHH
Confidence            445555554    4899999975       678999999999999887653             5799999998877655


Q ss_pred             HH-----HhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEE
Q 018437          170 FA-----RYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV  243 (356)
Q Consensus       170 ~~-----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~v  243 (356)
                      .+     +..|++++.++.+      |+++|++++++ ++++|++++++||+|.+.|+++|.++|+++      ++++++
T Consensus       131 ~~~~~~~~~~G~~~~~~d~~------d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~------gi~liv  198 (418)
T PLN02242        131 LLAHFLPRKCNITTTFVDIT------DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEK------GVTVVV  198 (418)
T ss_pred             HHHHhhhhccCceEEEcCCC------CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHh------CCEEEE
Confidence            54     3467777666542      78999999988 499999999999999999999999999999      999999


Q ss_pred             ecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEe
Q 018437          244 DAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWR  291 (356)
Q Consensus       244 D~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~  291 (356)
                      |++|+.+..   .+   .   ..++|.+..|.+|+++++..  .|+++.+
T Consensus       199 Dea~~~~~~---~~---~---~~g~divv~S~SK~l~g~g~~~gG~iv~~  239 (418)
T PLN02242        199 DNTFAPMVL---SP---A---RLGADVVVHSISKFISGGADIIAGAVCGP  239 (418)
T ss_pred             ECCCCccCC---CH---H---HcCCcEEEEeCccccCCCCCceEEEEEcC
Confidence            999964322   11   1   12689999999999876643  4777643

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.69  E-value=1.2e-15  Score=146.49  Aligned_cols=166  Identities=11%  Similarity=-0.036  Sum_probs=113.6

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH
Q 018437           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA  171 (356)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~  171 (356)
                      +...+.+++++.+++++|.+.      ..++++ |+.+|...+..+..             +++.|++...+|.++...+
T Consensus        53 g~~~~~~~~e~~la~~~~~~~------~l~~~s-G~~a~~~~~~~~~~-------------~~d~ii~d~~~H~sv~~~~  112 (370)
T PRK05937         53 GPSSLLDDLEHKIAHFHGAPE------AFIVPS-GYMANLGLCAHLSS-------------VTDYVLWDEQVHISVVYSL  112 (370)
T ss_pred             CChHHHHHHHHHHHHHhCCCe------EEEECC-hHHHHHHHHHHhCC-------------CCCEEEEEhhhhHHHHHHH
Confidence            456777788999999999964      244454 55676533222211             1467788899999999888


Q ss_pred             HhhCCeeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      +......  ++.    ...|+++|++++++      ++++|+++++++++|.+.|+++|.++|+++      ++++|+|+
T Consensus       113 ~~~~~~~--~~~----~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~------~~~livDe  180 (370)
T PRK05937        113 SVISGWH--QSF----RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKY------HAHLIVDE  180 (370)
T ss_pred             HHcCCce--EEe----cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHc------CCEEEEEC
Confidence            8764332  222    24589999999873      456778899999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      +|+.+..+.........+.....+.+..+.+|.+ +|.|+|+++.
T Consensus       181 a~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~vl~~  224 (370)
T PRK05937        181 AHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMGAALLSS  224 (370)
T ss_pred             CccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCceEEEcC
Confidence            9986655321100001111122234456677976 7888887764

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.69  E-value=9.1e-16  Score=146.85  Aligned_cols=186  Identities=16%  Similarity=0.102  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcC
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (356)
                      .+..+++.+.+..+.... .++...++|++    +++++|.+.       .+.+++||.|+.+++.++.-.         
T Consensus         5 ~e~~~~v~~~l~s~~~~~-~g~~~~~fE~~----~a~~~g~~~-------~~~~~sgt~Al~~al~~l~~~---------   63 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWLST-YGPYVEEFEKE----FAEYFGVKY-------AVAVSSGTSALHLALRALGLG---------   63 (363)
T ss_dssp             HHHHHHHHHHHHHTCCSS-SSHHHHHHHHH----HHHHHTSSE-------EEEESSHHHHHHHHHHHTTGG---------
T ss_pred             HHHHHHHHHHHHhCCccC-CCHHHHHHHHH----HHHHhCCCe-------EEEeCChhHHHHHHHHhcCCC---------
Confidence            345666777776552221 25677788876    788888764       789999999999999886421         


Q ss_pred             CCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHH
Q 018437          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT  229 (356)
Q Consensus       150 ~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~  229 (356)
                         .+++|++|..++.+...++...|+++++++++++++.||++.+++++++++++|+++   +..|...|+++|.++|+
T Consensus        64 ---~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~---h~~G~~~d~~~i~~~~~  137 (363)
T PF01041_consen   64 ---PGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVV---HLFGNPADMDAIRAIAR  137 (363)
T ss_dssp             ---TTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE----GGGB---HHHHHHHHH
T ss_pred             ---cCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEe---cCCCCcccHHHHHHHHH
Confidence               257999999999999999999999999999997789999999999999999998844   55688889999999999


Q ss_pred             HhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEc--CCcCCCCCcCeeEEEEeCCCC
Q 018437          230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~--~hK~l~~P~g~g~l~~~~~~~  295 (356)
                      ++      |++++-|+|++.+..  ......-.  .  -|..++|  ..|.+.+..| |++++++++.
T Consensus       138 ~~------~i~lIeD~a~a~g~~--~~g~~~G~--~--gd~~~fSf~~~K~i~~geG-G~v~~~~~~~  192 (363)
T PF01041_consen  138 KH------GIPLIEDAAQAFGAR--YKGRPVGS--F--GDIAIFSFHPTKIITTGEG-GAVVTNDPEL  192 (363)
T ss_dssp             HT------T-EEEEE-TTTTT-E--ETTEETTS--S--SSEEEEESSTTSSS-SSS--EEEEESTHHH
T ss_pred             Hc------CCcEEEccccccCce--eCCEeccC--C--CCceEecCCCCCCCcCCCC-eeEEecHHHH
Confidence            99      999999999986543  22211111  1  2555555  5588855555 8888877543

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.69  E-value=6.7e-16  Score=147.06  Aligned_cols=196  Identities=13%  Similarity=0.073  Sum_probs=141.4

Q ss_pred             ccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH
Q 018437           59 NLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        59 ~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (356)
                      +|....++. +++.+.+++.+.+......|. .++..    ++++.+++++++++     ..+++|+|+++++.+++.++
T Consensus        28 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~-~~~~~----~lr~aia~~~~~~~-----~~I~it~G~~~al~~~~~~l   97 (353)
T PRK05387         28 KLNTNENPYPPSPKVLEAIRAALGDDLRLYP-DPNAD----ALRQAIAAYYGLDP-----EQVFVGNGSDEVLAHAFLAF   97 (353)
T ss_pred             eccCCCCCCCCCHHHHHHHHHHhhhhhhcCC-CCcHH----HHHHHHHHHhCCCH-----HHEEEcCCHHHHHHHHHHHh
Confidence            344444433 356788888766653333332 22333    55666888888876     34899999999999999887


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccc
Q 018437          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (356)
                      .++             +++|++++|+|..+...++..|++++.+|++++ +.+|+++|++    ++++|++++|+||||.
T Consensus        98 ~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~----~~~~v~~~~P~NPtG~  159 (353)
T PRK05387         98 FNH-------------DRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDD-FSIDVEDYLR----PNGGIIFPNPNAPTGI  159 (353)
T ss_pred             cCC-------------CCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCC-CCCCHHHHHh----cCCEEEEeCCCCCCCC
Confidence            653             578999999999999989999999999999764 8999999874    3578899999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      +.+.+++.++++.+.     ++++++|++|..+..    ...........-..+..++.|.++ ....+|+++..
T Consensus       160 ~~~~~~~~~l~~~~~-----~~~livDe~y~~~~~----~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~  225 (353)
T PRK05387        160 ALPLAEIERILAANP-----DSVVVIDEAYVDFGG----ESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGH  225 (353)
T ss_pred             CCCHHHHHHHHHhCC-----CcEEEEeCcccccCC----cchHHHHhhCCCEEEEEehhHhhcchhhhceeeecC
Confidence            999999999998752     899999999964321    100001111122466778999865 44678998753

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.69  E-value=6.6e-16  Score=148.07  Aligned_cols=198  Identities=12%  Similarity=-0.008  Sum_probs=148.2

Q ss_pred             CChHHHHHHHHHHhcc---cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINK---NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~---~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      ++++.+.+++.+.+..   ....| ..++...+++.+.+++.+.+|++.+.   ..+++|+|+++++..++.++.++   
T Consensus        39 ~~~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~---~~I~it~G~~~~l~~~~~~~~~~---  111 (368)
T PRK03317         39 PPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTV---ENVWAANGSNEILQQLLQAFGGP---  111 (368)
T ss_pred             CCCHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCCh---hhEEECCCHHHHHHHHHHHhcCC---
Confidence            4457788888776542   22223 23467788889888888887765422   45899999999999999887653   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHH
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK  222 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~  222 (356)
                                ++.|+++.|+|..+...++..|++++.++.++ ++.+|++++++++.+ ++++|+++.|+||||.+.+.+
T Consensus       112 ----------gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~  180 (368)
T PRK03317        112 ----------GRTALGFVPSYSMHPIIARGTHTEWVEGPRAA-DFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLD  180 (368)
T ss_pred             ----------CCEEEEeCCChHHHHHHHHhcCCeeEEcccCC-CCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHH
Confidence                      57899999999999999999999988888765 389999999999974 678899999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEE-EEcCCcCCC-CCcCeeEEEEe
Q 018437          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSI-NVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       223 ~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~-~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ++.++++.+      ++++++|++|+.+...   +.. ...+....-+.+ ..++.|.++ ....+|+++..
T Consensus       181 ~l~~l~~~~------~~~lI~DE~y~~~~~~---~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~  243 (368)
T PRK03317        181 DVEAILDAA------PGIVVVDEAYAEFRRS---GTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAA  243 (368)
T ss_pred             HHHHHHHHC------CceEEEeCCchhhccc---CCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCC
Confidence            999999999      9999999999875321   111 111110111333 347899875 44667888763

>PRK05968 hypothetical protein; Provisional

Probab=99.69  E-value=8.7e-16  Score=148.12  Aligned_cols=156  Identities=18%  Similarity=0.106  Sum_probs=121.0

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----  166 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----  166 (356)
                      |...++|    +.+++++|.+.       .+++++|+.|+.+++.+...+             +++|+++.+.|.+    
T Consensus        63 p~~~~le----~~lA~l~g~~~-------av~~~sG~~Ai~~al~al~~~-------------Gd~Vl~~~~~y~~t~~~  118 (389)
T PRK05968         63 PTVRAFE----EMLAKLEGAED-------ARGFASGMAAISSTVLSFVEP-------------GDRIVAVRHVYPDAFRL  118 (389)
T ss_pred             hhHHHHH----HHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHH
Confidence            3444555    45899999874       466677888998888765432             5789999988875    


Q ss_pred             HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                      +...+...|+++++++.+      |++++++++ +++++|++.+|+++++.+.|+++|.++|+++      ++++++|++
T Consensus       119 ~~~~~~~~G~~v~~vd~~------d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~------gi~vivD~a  185 (389)
T PRK05968        119 FETILKRMGVEVDYVDGR------DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRH------GVVTMIDNS  185 (389)
T ss_pred             HHHHHHHcCceEEEeCCC------CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHc------CCEEEEECC
Confidence            345666789999888643      789999988 5789999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEe
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWR  291 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~  291 (356)
                      |+.++.  ..   +.   ..++|.++.|.+|++.+|.+  .|+++.+
T Consensus       186 ~a~~~~--~~---p~---~~g~Divv~S~tK~l~g~~~~~gG~i~~~  224 (389)
T PRK05968        186 WASPVF--QR---PI---TLGVDLVIHSASKYLGGHSDTVAGVVAGS  224 (389)
T ss_pred             Ccchhc--cC---ch---hcCCcEEEeeccccccCCCCeEEEEEEEC
Confidence            976543  11   11   23789999999999988755  6776643

>PRK05939 hypothetical protein; Provisional

Probab=99.69  E-value=2.1e-15  Score=145.56  Aligned_cols=150  Identities=16%  Similarity=0.008  Sum_probs=118.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch---
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC---  166 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s---  166 (356)
                      .|....+|++    ++++.|...       .+++++|+.|+..++.++.++             +++|+++.+.|.+   
T Consensus        46 ~p~~~~lE~~----la~leg~~~-------~v~~ssG~~Ai~~~l~all~~-------------Gd~Vv~~~~~y~~t~~  101 (397)
T PRK05939         46 TPTTAALEAK----ITKMEGGVG-------TVCFATGMAAIAAVFLTLLRA-------------GDHLVSSQFLFGNTNS  101 (397)
T ss_pred             CHHHHHHHHH----HHHHhCCCe-------EEEeCCHHHHHHHHHHHHcCC-------------CCEEEECCCccccHHH
Confidence            4555666665    888988864       566667789998888776442             5789999887754   


Q ss_pred             HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                      +...+...|++++.+++.      |+++|+++++++|++|++++++||+|.+.|+++|+++|+++      |+++++|++
T Consensus       102 ~~~~l~~~G~~v~~v~~~------d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~------gi~livD~t  169 (397)
T PRK05939        102 LFGTLRGLGVEVTMVDAT------DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRER------GLLYVVDNT  169 (397)
T ss_pred             HHHHHHhcCCEEEEECCC------CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHc------CCEEEEECC
Confidence            334566789999888753      78999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCCCc
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA  283 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~  283 (356)
                      |+.+..  +      +....++|.+..|.||+++++.
T Consensus       170 ~a~~~~--~------~~~~~gaDivv~S~sK~~~g~g  198 (397)
T PRK05939        170 MTSPWL--F------RPKDVGASLVINSLSKYIAGHG  198 (397)
T ss_pred             cccccc--c------CccccCCEEEEecCeecccCCC
Confidence            875422  1      1112379999999999987653

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.69  E-value=9.7e-16  Score=146.43  Aligned_cols=188  Identities=15%  Similarity=0.071  Sum_probs=134.7

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCChhHHHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      ++|.+.+++.+++... ..|.. +..    .++++.+++++|++++     ..++ |+|+++++..++.++.++      
T Consensus        48 ~~~~~~~~~~~~~~~~-~~y~~-~~~----~~lr~~ia~~~~~~~~-----~i~~~~~Ga~~~i~~~~~~~~~~------  110 (361)
T PRK00950         48 PSPKAVEAIEKELSKI-HRYPE-PDA----PELREALSKYTGVPVE-----NIIVGGDGMDEVIDTLMRTFIDP------  110 (361)
T ss_pred             CCHHHHHHHHHHHHhh-cCCCC-CCH----HHHHHHHHHHhCCCHH-----HEEEeCCCHHHHHHHHHHHhcCC------
Confidence            4567777776655432 12211 222    3556668888898762     3667 678888887777665332      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHH
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~  226 (356)
                             +++|+++.++|..+...++..|++++.+|.+. ++.+|+++|++++++++++|++++|+||||.+.|.++|.+
T Consensus       111 -------gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~  182 (361)
T PRK00950        111 -------GDEVIIPTPTFSYYEISAKAHGAKPVYAKREE-DFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRK  182 (361)
T ss_pred             -------CCEEEEcCCChHHHHHHHHHcCCEEEEeecCC-CCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHH
Confidence                   46899999999889888999999999999765 4899999999999888899999999999999999999999


Q ss_pred             HHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCC-CcCeeEEEEe
Q 018437          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLV-YAGVGWVVWR  291 (356)
Q Consensus       227 i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~-P~g~g~l~~~  291 (356)
                      +|+++      ++++++|++|+.+.-    ........ ... -.+..+..|.++. ...+|+++..
T Consensus       183 l~~~~------~~~li~De~y~~~~~----~~~~~~~~~~~~-vi~~~S~SK~~g~~GlRiG~~~~~  238 (361)
T PRK00950        183 ILEST------DALVFVDEAYVEFAE----YDYTPLALEYDN-LIIGRTFSKVFGLAGLRIGYGFVP  238 (361)
T ss_pred             HHHHC------CcEEEEECchhhhCc----cchHHHHHhcCC-EEEEEeehHhhcCchhhcchhcCC
Confidence            99999      999999999976431    11100011 111 1344568898753 3457888753

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.69  E-value=6.5e-16  Score=150.40  Aligned_cols=155  Identities=18%  Similarity=0.101  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH----HHHHh
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE----KFARY  173 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~----~~~~~  173 (356)
                      +++.+.++++.|.+.       .+++++|+.|+..++.++..+             +++||++...|.+..    ..+..
T Consensus        72 ~~le~~la~l~g~~~-------~v~fsSG~~Ai~~al~~ll~~-------------Gd~VI~~~~~y~~t~~~~~~~l~~  131 (437)
T PRK05613         72 EALENRIASLEGGVH-------AVAFASGQAAETAAILNLAGA-------------GDHIVTSPRLYGGTETLFLVTLNR  131 (437)
T ss_pred             HHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHhcCC-------------CCEEEECCCccHHHHHHHHHHHHh
Confidence            344555899998853       566667778888777765321             579999999988763    44567


Q ss_pred             hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccccccc
Q 018437          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP  253 (356)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~  253 (356)
                      .|+++++++ +..    |+++|+++++++|++|++.+++||+|.+.|+++|+++|+++      |+++|||++++.+.. 
T Consensus       132 ~Gi~v~~vd-~~~----d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~------gi~livD~t~a~g~~-  199 (437)
T PRK05613        132 LGIEVTFVE-NPD----DPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRN------QVPLIVDNTIATAAL-  199 (437)
T ss_pred             cCeEEEEEC-CCC----CHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCeEEEECCCccccc-
Confidence            799999998 332    89999999999999999999999999999999999999999      999999999875433 


Q ss_pred             ccCCCCcccccCCCceEEEEcCCcCCCCC-cCeeEEEEe
Q 018437          254 FLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWVVWR  291 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~  291 (356)
                       ..+   .   ..++|.++.|+||+++++ .+.|.+++.
T Consensus       200 -~~p---~---~~GaDivv~S~~K~l~G~gd~~gG~vv~  231 (437)
T PRK05613        200 -VRP---L---ELGADVVVASLTKFYTGNGSGLGGVLID  231 (437)
T ss_pred             -cCh---H---HhCCCEEEeeccceecCCCcceeEEEEe
Confidence             111   1   248999999999998654 234555553

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.69  E-value=6.9e-16  Score=148.75  Aligned_cols=159  Identities=14%  Similarity=0.071  Sum_probs=120.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|...++|+.    +++++|.+.       .+++++|+.|+..++.++.++             +++|+++.+.|.....
T Consensus        60 ~pt~~~Le~~----lA~l~G~~~-------al~~~sG~~Ai~~~l~al~~~-------------Gd~Vv~~~~~y~~~~~  115 (386)
T PRK06767         60 NPTVKLFEER----MAVLEGGEE-------ALAFGSGMAAISATLIGFLKA-------------GDHIICSNGLYGCTYG  115 (386)
T ss_pred             CcchHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCcHHHHHH
Confidence            4455555554    899999753       577778888988887776542             5789999998876544


Q ss_pred             HHH----hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 FAR----YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~~~----~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      ...    ..|+++..++.      .|++++++++++++++|++++|+||+|.+.|+++|.++|+++      ++++++|+
T Consensus       116 ~~~~~~~~~gi~~~~~~~------~d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~------g~~vivD~  183 (386)
T PRK06767        116 FLEVLEEKFMITHSFCDM------ETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRN------GLLVIVDN  183 (386)
T ss_pred             HHHHHHhhcCeEEEEeCC------CCHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHc------CCEEEEEC
Confidence            433    34555554432      378999999998999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      +|+.+..  ..   +.   ..++|.++.|.+|+++++..  .|+++.++
T Consensus       184 a~a~~~~--~~---pl---~~g~Div~~S~sK~l~g~g~~~gG~v~~~~  224 (386)
T PRK06767        184 TFCSPYL--QR---PL---ELGCDAVVHSATKYIGGHGDVVAGVTICKT  224 (386)
T ss_pred             CCccccc--CC---ch---hcCCcEEEecCcceecCCCCceeEEEEeCh
Confidence            9975332  11   11   24789999999999977654  57777654

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.69  E-value=9.6e-16  Score=149.30  Aligned_cols=159  Identities=16%  Similarity=0.127  Sum_probs=125.9

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch---
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC---  166 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s---  166 (356)
                      .|....+|+.    ++++.|.+.       .+++++|+.|+..++.++..+             +++|+++.+.|..   
T Consensus        63 ~p~~~~Le~~----lA~leg~~~-------al~~~sG~~Ai~~al~~ll~~-------------GD~Vlv~~~~y~~t~~  118 (431)
T PRK08248         63 NPTTDVFEKR----IAALEGGIG-------ALAVSSGQAAITYSILNIASA-------------GDEIVSSSSLYGGTYN  118 (431)
T ss_pred             CchHHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEccCchhhHHH
Confidence            4555566655    888988754       789999999999998876442             5789999987754   


Q ss_pred             -HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          167 -WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       167 -~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                       +...++..|++++.++++      |++++++++++++++|++++++||+|.+.|+++|.++|+++      ++++++|+
T Consensus       119 ~~~~~~~~~Gv~v~~vd~~------d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~------gi~vIvD~  186 (431)
T PRK08248        119 LFAHTLPKLGITVKFVDPS------DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEH------GIPLIVDN  186 (431)
T ss_pred             HHHHHHHhCCEEEEEECCC------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEeC
Confidence             345566789999888752      78999999998999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc-CeeEEEEeC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l~~~~  292 (356)
                      +++.+..   .    ..+ ..++|.++.|.|||+++|. .+|.+++.+
T Consensus       187 t~a~~~~---~----~pl-~~gaDivv~S~tK~lgg~g~~~Gg~v~~~  226 (431)
T PRK08248        187 TFASPYL---L----RPI-EHGADIVVHSATKFIGGHGTSIGGVIVDS  226 (431)
T ss_pred             CCCcccc---C----Chh-HcCCCEEEEcCccccCCCCCceEEEEEeC
Confidence            9874322   1    111 2489999999999997775 366666644

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.69  E-value=7.1e-16  Score=150.09  Aligned_cols=160  Identities=15%  Similarity=0.013  Sum_probs=122.4

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+    .++++.|.+.       .+++++|+.|+..++.++..+             +++|+++...|.....
T Consensus        68 ~p~~~~Le~----~lA~l~g~~~-------av~~sSG~aAi~~al~all~~-------------Gd~Vv~~~~~y~~t~~  123 (436)
T PRK07812         68 NPTQDVVEQ----RIAALEGGVA-------ALLLASGQAAETFAILNLAGA-------------GDHIVSSPRLYGGTYN  123 (436)
T ss_pred             CchHHHHHH----HHHHHhCCCe-------EEEEccHHHHHHHHHHHHhCC-------------CCEEEEeCCcchHHHH
Confidence            345455554    5899999875       688889999999998877542             5789988887766443


Q ss_pred             ----HHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 ----FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ----~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                          .+...|++++.++ +.    .|++++++++++++++|++.+++||+|.+.|+++|.++||++      |++++||+
T Consensus       124 ~~~~~l~~~Gi~v~~vd-d~----~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~------gi~liVD~  192 (436)
T PRK07812        124 LFHYTLPKLGIEVSFVE-DP----DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEA------GVPLIVDN  192 (436)
T ss_pred             HHHHHhhcCeEEEEEEC-CC----CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEEC
Confidence                3344677777775 32    289999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc-CeeEEEEeC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l~~~~  292 (356)
                      +++.+..  ..   +.   ..++|.++.|+||+++++. ..|.+++.+
T Consensus       193 t~a~~~~--~~---pl---~~GaDivv~S~tK~lgg~G~~i~G~vv~~  232 (436)
T PRK07812        193 TIATPYL--IR---PL---EHGADIVVHSATKYLGGHGTAIAGVIVDG  232 (436)
T ss_pred             CCccccc--CC---ch---hcCCCEEEEecccccCCCCCeEEEEEEcC
Confidence            9875433  11   11   2489999999999996553 255555543

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.69  E-value=6.6e-16  Score=147.93  Aligned_cols=201  Identities=19%  Similarity=0.090  Sum_probs=141.5

Q ss_pred             cccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      +.|..+.++ ++++.+.+++.+.+..... | ...+..+    +++.+++.+|+++     ..+++|+|+++++.+++.+
T Consensus        32 i~l~~nen~~~~~~~v~~a~~~~~~~~~~-Y-p~~g~~~----Lr~aia~~~~~~~-----~~I~vt~Gs~e~i~~~~~~  100 (366)
T PRK01533         32 VKLASNENPFGCSPRVLDELQKSWLDHAL-Y-PDGGATT----LRQTIANKLHVKM-----EQVLCGSGLDEVIQIISRA  100 (366)
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHhcCc-C-CCCCHHH----HHHHHHHHhCCCc-----ceEEECCCHHHHHHHHHHH
Confidence            334444444 3457888888766543222 2 2334444    4455777788886     3489999999999999888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      +.++             +++|+++.|+|..+...++..|++++.||+++  +.+|+++|++++++++++|++++|+||||
T Consensus       101 l~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~--~~~d~~~l~~~~~~~~~~v~i~~P~NPTG  165 (366)
T PRK01533        101 VLKA-------------GDNIVTAGATFPQYRHHAIIEGCEVKEVALNN--GVYDLDEISSVVDNDTKIVWICNPNNPTG  165 (366)
T ss_pred             hcCC-------------CCEEEEcCCcHHHHHHHHHHcCCEEEEeecCC--CCcCHHHHHHHhCcCCcEEEEeCCCCCCC
Confidence            7543             57899999999999999999999999999963  57999999999988899999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-ccc-ccCCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWD-FRLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       217 ~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~-~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      .+.+.+++.++++...+    +.++++|++|..+...  .... ... +....--.+.-|+.|.++ ....+|+++.
T Consensus       166 ~~~~~~~l~~l~~~~~~----~~~~iiDe~y~~~~~~--~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~  236 (366)
T PRK01533        166 TYVNDRKLTQFIEGISE----NTLIVIDEAYYEYVTA--KDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVG  236 (366)
T ss_pred             CCcCHHHHHHHHHhCCC----CCEEEEEccHHHhhcc--ccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhC
Confidence            99888877777765421    3467889999754421  0000 001 111111244556889765 5677888875

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.68  E-value=2.7e-15  Score=144.23  Aligned_cols=182  Identities=12%  Similarity=0.068  Sum_probs=132.3

Q ss_pred             HHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCC
Q 018437           72 CDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP  151 (356)
Q Consensus        72 v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~  151 (356)
                      -.+++.+.+..+.... ..    .+.+++.+++++.+|.+.       .++|+||+.|+.+++.++.-            
T Consensus        13 ~~~~~~~~l~~~~~~g-~~----~~~~~~e~~la~~~g~~~-------~v~~~sgt~al~~~l~~~~~------------   68 (375)
T PRK11706         13 ELDYIQQAMSSGKLCG-DG----GFTRRCQQWLEQRFGSAK-------VLLTPSCTAALEMAALLLDI------------   68 (375)
T ss_pred             HHHHHHHHHHcCCccC-CC----HHHHHHHHHHHHHhCCCe-------EEEECCHHHHHHHHHHHhCC------------
Confidence            3555666665432211 12    234556666888888864       78999999998887765421            


Q ss_pred             CCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHh
Q 018437          152 YDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKK  231 (356)
Q Consensus       152 ~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~  231 (356)
                      ..+++|+++.++|.++..++...|++++.++++++++.+|+++|++++++++++|++++   ++|...|+++|.++|+++
T Consensus        69 ~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~~~~~~i~~la~~~  145 (375)
T PRK11706         69 QPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPVH---YAGVACEMDTIMALAKKH  145 (375)
T ss_pred             CCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEeC---CCCCccCHHHHHHHHHHc
Confidence            12579999999999999999999999999999876689999999999998899888664   689999999999999999


Q ss_pred             hhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCC--cCCCCCcCeeEEEEeCC
Q 018437          232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       232 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~l~~~~~  293 (356)
                            ++++++|+||+.+..  .... +.  . ...|.-++|+|  |.+.++.| |++++.++
T Consensus       146 ------~i~vIeD~a~a~g~~--~~~~-~~--g-~~~~~~~~Sf~~~K~l~~g~g-G~~~~~~~  196 (375)
T PRK11706        146 ------NLFVVEDAAQGVMST--YKGR-AL--G-TIGHIGCFSFHETKNYTAGEG-GALLINDP  196 (375)
T ss_pred             ------CCEEEEECccccccc--cCCe-ee--e-cCcCEEEEeCCCCccccccCC-eEEEECCH
Confidence                  999999999986542  1111 11  1 11355556666  98855444 55555554

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.68  E-value=2.3e-15  Score=148.55  Aligned_cols=216  Identities=11%  Similarity=-0.013  Sum_probs=139.0

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      +..+.+..+++.+.+.+.+.+... .++....+....|..+..++.+.++..........+++|+|+++|+.+++.++..
T Consensus        99 l~~g~p~~~~~~~~~~~~~~~~~~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~  177 (521)
T TIGR03801        99 YVIDQLGFDPDAFLYEMCDGIIGD-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKA  177 (521)
T ss_pred             hcCCCCCCCCCHHHHHHHHHhhcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhH
Confidence            444444444433334444443212 1222333444455444467676655432111112589999999999998876422


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhh--CCeeEEEEecC-Cc-----cccCHHHHHHHHhhCceEEEEecC
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF--EVELKEVKLEE-GY-----YVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~--G~~v~~v~~~~-~~-----~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      ...        -..+++|+++.|+|..|...+++.  |++++.|++++ +.     |++|+++|++++++++++|++++|
T Consensus       178 ~~l--------l~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP  249 (521)
T TIGR03801       178 NEL--------LKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNP  249 (521)
T ss_pred             hhc--------CCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCC
Confidence            100        112579999999999999998876  56666777653 22     899999999998889999999999


Q ss_pred             CCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC-CCCcCeeE
Q 018437          212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG-LVYAGVGW  287 (356)
Q Consensus       212 ~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l-~~P~g~g~  287 (356)
                      +||||.+-+   +++|.++|++++.    ++++++|.+|+.+..++.+.   ... .+.--.+..|..|.+ .+.+.+|+
T Consensus       250 ~NPTG~vls~e~l~~I~~ia~~~~~----~l~II~DEvY~~f~~~~~sl---~~~-~~~~vI~v~SfSK~fg~~G~RlG~  321 (521)
T TIGR03801       250 SNPPSVAMSDESIEKIVDIVANDRP----DLMILTDDVYGTFVDDFRSL---FAE-LPYNTIGVYSFSKYFGATGWRLGT  321 (521)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCC----CeEEEECCCchhhcccccch---hhh-CCCCEEEEEcchhhccCchhhhhh
Confidence            999999965   6778888887522    89999999998754322110   011 111124455688975 56789999


Q ss_pred             EEEeC
Q 018437          288 VVWRT  292 (356)
Q Consensus       288 l~~~~  292 (356)
                      ++..+
T Consensus       322 i~~~~  326 (521)
T TIGR03801       322 IALHK  326 (521)
T ss_pred             hhcCc
Confidence            98754

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.68  E-value=1.1e-15  Score=150.90  Aligned_cols=184  Identities=14%  Similarity=0.073  Sum_probs=136.5

Q ss_pred             cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch
Q 018437           87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC  166 (356)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s  166 (356)
                      |....+...+++++.+++.+.+|.... .....+++|+|+++++.+.+.+++++             ++.|+++.|+|..
T Consensus        82 Y~~~~G~~~LR~aiA~~l~~~~~~~~~-v~~~~Iiit~Ga~~al~~l~~~l~~p-------------Gd~Vlv~~P~Y~~  147 (468)
T PLN02450         82 FQDYHGLPAFKNALAEFMSEIRGNKVT-FDPNKLVLTAGATSANETLMFCLAEP-------------GDAFLLPTPYYPG  147 (468)
T ss_pred             CCCCCChHHHHHHHHHHHHHhhCCCCC-cChHHeEEccChHHHHHHHHHHhCCC-------------CCEEEECCCCCCc
Confidence            444557788999999999887774310 01134899999999999998887653             5799999999999


Q ss_pred             HHHHHH-hhCCeeEEEEec-CCccccCHHHHHHHHhh------CceEEEEecCCCcccccCC---HHHHHHHHHHhhhcc
Q 018437          167 WEKFAR-YFEVELKEVKLE-EGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEET  235 (356)
Q Consensus       167 ~~~~~~-~~G~~v~~v~~~-~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~  235 (356)
                      +...+. ..|++++.||++ ++++.+|+++|++++.+      ++++|++++|+||||.+-+   +++|.++|+++    
T Consensus       148 ~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~----  223 (468)
T PLN02450        148 FDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAK----  223 (468)
T ss_pred             hHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHC----
Confidence            988877 589999999986 34588999999998864      6889999999999999855   56788888899    


Q ss_pred             CCCCcEEEecccccccccccCCCC-c-cccc---------CCCceEEEEcCCcCCC-CCcCeeEEEEeC
Q 018437          236 GWDTPIHVDAASGGFIAPFLYPDL-E-WDFR---------LPLVKSINVSGHKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       236 ~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~---------~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~  292 (356)
                        ++++++|++|+.+...  .+.. . ....         ...--.+..+..|.++ ....+|+++..+
T Consensus       224 --~~~iI~DE~Y~~~~f~--~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~  288 (468)
T PLN02450        224 --NIHLISDEIYSGTVFD--SPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSND  288 (468)
T ss_pred             --CcEEEEEccccccccC--CCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECC
Confidence              9999999999875431  1100 0 0100         0111234567899764 778999998754

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.68  E-value=2.1e-15  Score=145.19  Aligned_cols=198  Identities=13%  Similarity=-0.048  Sum_probs=142.0

Q ss_pred             cccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|..+.++ +++|.+.+++....  ....| ..++..    ++++.+++++|+++     ..+++|+|+++++..++.+
T Consensus        55 i~l~~n~~p~~~~~~v~~a~~~~~--~~~~Y-p~~~~~----~lr~~ia~~~~~~~-----~~I~~t~Ga~~~i~~~~~~  122 (380)
T PLN03026         55 VKLDANENPYGPPPEVLEALGNMK--FPYVY-PDPESR----RLRAALAEDSGLES-----ENILVGCGADELIDLLMRC  122 (380)
T ss_pred             EEccCCCCCCCCCHHHHHHHHhhH--hhccC-CCCCHH----HHHHHHHHHhCcCh-----hhEEEcCCHHHHHHHHHHH
Confidence            344444333 34566777775421  11112 123333    46666888889876     3488999999999988877


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHH-hhCceEEEEecCCCcc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV-DENTICVAAILGSTLT  215 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i-~~~~~~v~~~~~~~~t  215 (356)
                      +.++             +++|+++.|+|..+...++..|++++.+|.+++ +.+|+++|++++ ++++++|++++|+|||
T Consensus       123 ~~~~-------------gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~~~~~~~~v~l~~P~NPT  188 (380)
T PLN03026        123 VLDP-------------GDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPD-FSLDVPRIVEAVETHKPKLLFLTSPNNPD  188 (380)
T ss_pred             hcCC-------------CCEEEEcCCChHHHHHHHHHcCCEEEEeecCCC-CCcCHHHHHHHHhccCCcEEEEeCCCCCC
Confidence            6432             578999999999899999999999999998754 899999999999 6789999999999999


Q ss_pred             cccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       216 G~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      |.+.+.+++.++++ .      .+++++|++|..+...   ......+....-..+.-++.|.++ +...+|+++..
T Consensus       189 G~~~~~~~l~~l~~-~------~~~vi~DeaY~~~~~~---~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~  255 (380)
T PLN03026        189 GSIISDDDLLKILE-L------PILVVLDEAYIEFSTQ---ESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFP  255 (380)
T ss_pred             CCCCCHHHHHHHHh-c------CCEEEEECcchhhcCC---cchHHHHHhCCCEEEEecchHhhcCccccceeeecC
Confidence            99999999999996 4      4899999999765321   111011111122355567889864 56778998753

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.68  E-value=3e-15  Score=137.69  Aligned_cols=202  Identities=13%  Similarity=0.075  Sum_probs=153.2

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.++.....|.  -....+-+++..|.++..+++...   .++++++|-.-++.++++++.++        
T Consensus        40 pp~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~---e~i~~~p~VVpgi~~~I~~~T~~--------  106 (388)
T COG1168          40 PPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKP---EWIVFVPGVVPGISLAIRALTKP--------  106 (388)
T ss_pred             CHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCc---ceEEEcCcchHhHHHHHHHhCcC--------
Confidence            47899999999876645554  244567889999999999998743   56889999888888888877553        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC--CccccCHHHHHHHHhhC-ceEEEEecCCCccccc---CCHH
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMNPVKAVELVDEN-TICVAAILGSTLTGEF---EDVK  222 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~--~~~~~d~~~L~~~i~~~-~~~v~~~~~~~~tG~~---~~i~  222 (356)
                           ++.|++..|.|+.+.++.+..|-++...|+-+  +.+.||.++|++++.+. ++++++|+|+||+|.+   ++++
T Consensus       107 -----gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~  181 (388)
T COG1168         107 -----GDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELR  181 (388)
T ss_pred             -----CCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHH
Confidence                 67899999999999999999999999999853  34888999999999764 6899999999999998   7899


Q ss_pred             HHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-ccCCC-ceEEE-EcCCcCCCC-CcCeeEEEEeCCCC
Q 018437          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPL-VKSIN-VSGHKYGLV-YAGVGWVVWRTKDD  295 (356)
Q Consensus       223 ~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~-~Ds~~-~~~hK~l~~-P~g~g~l~~~~~~~  295 (356)
                      +|.++|++|      |+.+++|+.+.-.++.- ..+.++. +.... --+++ .++.|.+.. .-.|+.++..+++.
T Consensus       182 ~i~elc~kh------~v~VISDEIHaDlv~~g-~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~l  251 (388)
T COG1168         182 KIAELCLRH------GVRVISDEIHADLVLGG-HKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNREL  251 (388)
T ss_pred             HHHHHHHHc------CCEEEeecccccccccC-CCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHH
Confidence            999999999      99999999988765521 0111111 11111 12333 446886443 45778888776544

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.68  E-value=1e-14  Score=135.75  Aligned_cols=303  Identities=11%  Similarity=0.008  Sum_probs=201.1

Q ss_pred             cccccccc-chhhhhcCC--CCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccccc-cCCCChHHHH-HHHH--HHhcc-c
Q 018437           12 EILSSTFA-SRYVRAAIP--RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASF-VTTWMEPECD-KLVM--ASINK-N   83 (356)
Q Consensus        12 ~~~~~~~~-~~~~~~~~~--~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~v~-~~i~--~~~~~-~   83 (356)
                      +||+++|. ..|..-+..  ...-...+.++.++++.++++...+......++.+ .....|+.+. .++.  +++.. .
T Consensus        29 ~Sld~L~~~~IP~~Ir~~~~~~~~~~~~~sE~e~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rnile~pewyTaYT  108 (450)
T COG0403          29 SSLDELFSQDIPPSIRKKLDTLLPLPKPLSEYEALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRNILENPEWYTAYT  108 (450)
T ss_pred             CCHHHHhhccCCHHHHhcccccCCCCCCCCHHHHHHHHHHHHhcCchhhhhccCcccCCcCcHHHHHHhhcCccccccCC
Confidence            67899999 777755532  22223445799999999999887665332223333 3334445555 3332  33433 4


Q ss_pred             CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC
Q 018437           84 YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV  163 (356)
Q Consensus        84 ~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~  163 (356)
                      +++|+.+++..+...+.+.++++|+|++.     ++..+--++|.+--.++++.|.. +         .+..+++++...
T Consensus       109 PYQpEISQGrLqaLfefQtlv~dLTGm~V-----ANASm~DeaTAaAEAm~ma~r~~-k---------~k~~~~~V~~~v  173 (450)
T COG0403         109 PYQPEISQGRLEALFEFQTLVADLTGLDV-----ANASMLDEATAAAEAMLMAKRVT-K---------KKRNKFLVPKDV  173 (450)
T ss_pred             CCchhhhhHHHHHHHHHHHHHHHHhCCCc-----ccchhhhhHHHHHHHHHHHHHhh-c---------CcCceEEecCCC
Confidence            56677788999999999999999999996     23444456664443334433322 1         113689999999


Q ss_pred             cchHHHHHHh----hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc-ccCCHHHHHHHHHHhhhccCCC
Q 018437          164 QVCWEKFARY----FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG-EFEDVKLLHDLLTKKNEETGWD  238 (356)
Q Consensus       164 h~s~~~~~~~----~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG-~~~~i~~I~~i~~~~~~~~~~~  238 (356)
                      |+.....++.    +|++++.++.+      |.+.|+++.+.++.+|++.+|++. | ...|+++|.+.+|++      +
T Consensus       174 hpqt~~Vl~Tra~~~g~~i~~~~~~------d~~~l~~~~~~~~~gv~vQyP~~~-G~~~~d~~~l~~~~h~~------~  240 (450)
T COG0403         174 HPQTLDVLRTRAEGLGIEIEVVDAD------DLDDLESADDGDVFGVLVQYPNTF-GIVEEDLRALIEAAHSA------G  240 (450)
T ss_pred             CHHHHHHHHhhcccCceEEEEeccc------hhhhhhhccccCeEEEEEecCCCC-CccchhHHHHHHHHhhc------C
Confidence            9987766663    35566555544      778888883347899999999976 7 677899999999999      9


Q ss_pred             CcEEEecccccccccccCCCCcccccCCCceEEEEcCCcC----CCCCcCeeEEEEeCCCCCccccccccCCCCCC----
Q 018437          239 TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY----GLVYAGVGWVVWRTKDDLPDELVFHINYLGSD----  310 (356)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~----l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~----  310 (356)
                      .+++|=+=--...+  +.  ++-.   .|+|.++-+++.+    +++.+.+|++.+|++ . .+.+   +..+-|.    
T Consensus       241 al~~v~aDplaL~L--L~--pPGe---~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~-~-~R~m---PGRlVG~S~D~  308 (450)
T COG0403         241 ALVIVAADPLALGL--LK--PPGE---FGADIVVGSAQRFGVPMGFGGPHAGYFAVKDE-F-KRQM---PGRLVGVSVDA  308 (450)
T ss_pred             CEEEEEechhHhhc--cC--Cccc---cCCceEEecCcccCCCcCCCCcceeeeeEhHh-H-hhcC---CCceeeeeecC
Confidence            88777432111111  11  1222   3899999999987    344466889998864 2 2222   1111110    


Q ss_pred             --------------------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          311 --------------------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       311 --------------------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                                          .-+. -.||-++..++..-.++.++|++|++++.++..+++.||+
T Consensus       309 ~G~~A~rLaLQTREQHIRReKATS-NICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la  372 (450)
T COG0403         309 AGKRAFRLALQTREQHIRREKATS-NICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLA  372 (450)
T ss_pred             CCCchhhhhHHHHHHHHhhhccch-hhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence                                0011 1388888888888899999999999999999999999885

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.68  E-value=1.4e-15  Score=148.15  Aligned_cols=157  Identities=11%  Similarity=0.074  Sum_probs=123.8

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH---
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW---  167 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~---  167 (356)
                      |....+|+    .++++.|.+.       .+++++|+.|+..++.++..+             +++||++.+.|...   
T Consensus        63 p~~~~le~----~lA~l~g~~~-------al~~~SG~~Ai~~al~all~p-------------Gd~VIv~~~~y~~t~~~  118 (427)
T PRK05994         63 PTNAVLEE----RVAALEGGTA-------ALAVASGHAAQFLVFHTLLQP-------------GDEFIAARKLYGGSINQ  118 (427)
T ss_pred             ccHHHHHH----HHHHHhCCCc-------EEEEcCHHHHHHHHHHHHhCC-------------CCEEEEecCcchhHHHH
Confidence            44444554    5889998864       678899999999998877542             57899999988753   


Q ss_pred             -HHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          168 -EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       168 -~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                       ...+...|++++.++++      |++++++++++++++|++++++||+|.+.|+++|.++|+++      ++++++|++
T Consensus       119 ~~~~~~~~G~~v~~vd~~------d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~------gi~livD~a  186 (427)
T PRK05994        119 FGHAFKSFGWQVRWADAD------DPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRA------GLPLIVDNT  186 (427)
T ss_pred             HHHHHHhcCcEEEEECCC------CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECC
Confidence             34466779998888753      78999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC-eeEEEEe
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWR  291 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l~~~  291 (356)
                      ++.+..  ..   +.   ..++|.++.|.||+++++.+ .|.+++.
T Consensus       187 ~a~~~~--~~---pl---~~gaDivv~S~tK~lgg~~~~~gG~v~~  224 (427)
T PRK05994        187 LASPYL--IR---PI---EHGADIVVHSLTKFLGGHGNSMGGIIVD  224 (427)
T ss_pred             cccccc--CC---cc---ccCCcEEEEcCccccCCCCCcEEEEEEe
Confidence            975432  11   12   24899999999999977654 4544443

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.68  E-value=5.7e-16  Score=147.91  Aligned_cols=162  Identities=17%  Similarity=0.041  Sum_probs=118.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|...++|+.    ++++.|.+.       .++++||++|+.+++. +..+             +++||++.+.|.....
T Consensus        53 ~p~~~~le~~----lA~leg~~~-------~v~~~sG~aAi~~~l~-~l~~-------------GD~VI~~~~~yg~~~~  107 (364)
T PRK07269         53 NPTRAKLEET----LAAIESADY-------ALATSSGMSAIVLAFS-VFPV-------------GSKVVAVRDLYGGSFR  107 (364)
T ss_pred             CccHHHHHHH----HHHHhCCCe-------EEEeCCHHHHHHHHHH-HhCC-------------CCEEEEecCCcCchHH
Confidence            4566666665    788887653       7899999999998884 3222             5789998877654333


Q ss_pred             HHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccc
Q 018437          170 FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG  249 (356)
Q Consensus       170 ~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~  249 (356)
                      ......-.- .+.+   .+..|+++++++++++|++|++++|+||+|.+.|+++|+++|+++      |+++++|++|+.
T Consensus       108 ~~~~~~~~~-~~~~---~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~------gi~vvvD~t~~~  177 (364)
T PRK07269        108 WFNQQEKEG-RFHF---TYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAK------GAKVIVDNTFYS  177 (364)
T ss_pred             HHHHHHhcC-cEEE---EecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHc------CCEEEEECCCcc
Confidence            222110000 1222   145689999999999999999999999999999999999999999      999999999765


Q ss_pred             ccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCCC
Q 018437          250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKD  294 (356)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~~  294 (356)
                      .+.  ..   +.   ..++|.++.|.||++.++.+  .|+++.++++
T Consensus       178 ~~~--~~---pl---~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~  216 (364)
T PRK07269        178 PIY--QR---PI---ELGADIVLHSATKYLSGHNDVLAGVVVTNDLE  216 (364)
T ss_pred             ccc--CC---ch---hhCCcEEEecCceeccCCCcccceEEEeCcHH
Confidence            322  11   11   24899999999999987765  6877776544

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.68  E-value=5.8e-16  Score=148.77  Aligned_cols=158  Identities=15%  Similarity=0.037  Sum_probs=119.7

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH---
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW---  167 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~---  167 (356)
                      |....+|+    .++++.|.+.       .+++++|+.|+..++ .+..+             +++|+++.+.|...   
T Consensus        50 p~~~~Le~----~la~l~g~~~-------al~~~SG~~Al~~~l-~~l~p-------------Gd~Vi~~~~~y~~t~~~  104 (380)
T PRK06176         50 PTRFALEE----LIADLEGGVK-------GFAFASGLAGIHAVF-SLFQS-------------GDHVLLGDDVYGGTFRL  104 (380)
T ss_pred             hhHHHHHH----HHHHHhCCCC-------EEEECCHHHHHHHHH-HHcCC-------------CCEEEEcCCChhHHHHH
Confidence            44555554    4899998764       466677777876544 33321             57899999887643   


Q ss_pred             -HHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          168 -EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       168 -~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                       ...+...|++++.++.      .|++++++++++++++|++.+|+||+|.+.|+++|.++|+++      ++++++|++
T Consensus       105 ~~~~~~~~gi~v~~vd~------~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~------gi~vivD~t  172 (380)
T PRK06176        105 FDKVLVKNGLSCTIIDT------SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDH------GLLTIVDNT  172 (380)
T ss_pred             HHHHHHhcCeEEEEcCC------CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHc------CCEEEEECC
Confidence             3445667888887764      278999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCC
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTK  293 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~  293 (356)
                      |+.+..  ..   +.   ..++|.++.|++|++.+|.+  .|+++.+++
T Consensus       173 ~a~~~~--~~---p~---~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~  213 (380)
T PRK06176        173 FATPYY--QN---PL---LLGADIVVHSGTKYLGGHSDVVAGLVTTNNE  213 (380)
T ss_pred             cccccc--CC---cc---ccCCCEEEecCceeccCCccceeeEEEecHH
Confidence            986432  11   12   24899999999999988764  677766554

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.68  E-value=4.3e-15  Score=145.10  Aligned_cols=176  Identities=12%  Similarity=-0.042  Sum_probs=128.7

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~  170 (356)
                      +...++|+    .+++++|.+.       .+++++||+|+..++.++...+....   + -..+++||++.++|.++..+
T Consensus        63 ~~~~~fe~----~lA~~~g~~~-------~v~~~sGt~al~~aL~al~~~~~~~~---~-~~pGd~VIv~~~t~~a~~~~  127 (438)
T PRK15407         63 RFNDAFEK----KLAEFLGVRY-------ALLVNSGSSANLLAFSALTSPKLGDR---A-LKPGDEVITVAAGFPTTVNP  127 (438)
T ss_pred             hhHHHHHH----HHHHHhCCCe-------EEEECCHHHHHHHHHHHHhhcccccc---C-CCCCCEEEECCCCcHHHHHH
Confidence            33445554    4888888863       78899999999999987643210000   0 01257899999999999999


Q ss_pred             HHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccc
Q 018437          171 ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (356)
Q Consensus       171 ~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~  250 (356)
                      +...|++++.++++.+++.+|++.+++++++++++|++++   ++|...++++|.++|+++      ++++++|++|+.+
T Consensus       128 v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~tkaVi~~~---~~G~p~dl~~I~~la~~~------gi~vIeDaa~a~G  198 (438)
T PRK15407        128 IIQNGLVPVFVDVELPTYNIDASLLEAAVSPKTKAIMIAH---TLGNPFDLAAVKAFCDKH------NLWLIEDNCDALG  198 (438)
T ss_pred             HHHcCCEEEEEecCCCcCCcCHHHHHHHcCcCCeEEEEeC---CCCChhhHHHHHHHHHHC------CCEEEEECccchh
Confidence            9999999999999865689999999999999999998776   368888999999999999      9999999999865


Q ss_pred             cccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCC
Q 018437          251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~  295 (356)
                      ..  ..+.....  ...+-.+++.+.|.+.+..| |+++++++++
T Consensus       199 ~~--~~g~~~G~--~gd~~~fSf~~~k~~~~geG-G~l~t~d~~l  238 (438)
T PRK15407        199 ST--YDGRMTGT--FGDIATLSFYPAHHITMGEG-GAVFTNDPLL  238 (438)
T ss_pred             hh--cCCeeeec--cCceEEEeCCCCCCccccCc-eEEEECCHHH
Confidence            44  12211111  12233444455566655555 8888876544

>PRK06460 hypothetical protein; Provisional

Probab=99.67  E-value=8.4e-16  Score=147.55  Aligned_cols=157  Identities=15%  Similarity=0.070  Sum_probs=115.4

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC----cc
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV----QV  165 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~----h~  165 (356)
                      .+...++|    +.+++++|.+.       .+++++|++++..++.++..+             +++|+++.+.    +.
T Consensus        44 ~p~~~~L~----~~lA~l~g~~~-------~v~~~sG~~ai~~~l~al~~~-------------Gd~Vl~~~~~~~~ty~   99 (376)
T PRK06460         44 NPTVLELT----KKIVELENAEM-------GVAFSSGMGAISTTALALLKP-------------GNSVLVHRDMFGRSYR   99 (376)
T ss_pred             CccHHHHH----HHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEecCCcCcHHH
Confidence            34444454    55899999864       455567788988888776442             5788888654    44


Q ss_pred             hHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          166 CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .+...++..|++++.++.++      .+.+++.+++++++|++++|+||+|.+.|+++|.++|+++      ++++++|+
T Consensus       100 ~~~~~~~~~G~~v~~~~~~~------~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~------g~~vivDe  167 (376)
T PRK06460        100 FFTDYLKNWGVNVDASNPGS------DNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKEN------GSILIVDA  167 (376)
T ss_pred             HHHHHHHhhCcEEEEECCCC------HHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEEC
Confidence            46677788899988887643      2345565667899999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEE
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVW  290 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~  290 (356)
                      +|+.+..  ..   +.   ..++|.+..+++|+++++.+  .|+++.
T Consensus       168 a~~~~~~--~~---~l---~~~~divv~S~sK~l~G~~~~~~G~~~~  206 (376)
T PRK06460        168 TFSTPIN--QK---PL---ELGADIVVHSASKFLAGHNDVIAGLAAG  206 (376)
T ss_pred             CcCcccc--CC---hh---hcCCCEEEeecceeccCCCCceEEEEec
Confidence            9975321  11   11   23679999999999865432  677654

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.67  E-value=2.1e-15  Score=139.18  Aligned_cols=273  Identities=14%  Similarity=0.073  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhccc-----CCC--cccCcchHHHHHHHHHHHHHHhCCCC
Q 018437           40 EAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKN-----YVD--MDEYPVTTELQNRCVNMIAHLFNTPV  112 (356)
Q Consensus        40 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~-----~~~--~~~~~~~~~le~~~~~~la~l~g~~~  112 (356)
                      .++.+.+++...+..+ .++|-. --+..++.+.+++.+-+.+.     ++.  |..-.-..++|..+.+...++||++.
T Consensus        12 ~~i~~~i~~e~~rq~~-~ieLIA-SEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~   89 (413)
T COG0112          12 PEIFEAIQQELERQRE-HIELIA-SENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEY   89 (413)
T ss_pred             HHHHHHHHHHHHHHhh-ceeeee-ccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCc
Confidence            3456655555443322 222211 11234577888776554321     111  22223567899999999999999985


Q ss_pred             CCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCC---CcchHHHHHHhhC--CeeEEEEecCCc
Q 018437          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN---VQVCWEKFARYFE--VELKEVKLEEGY  187 (356)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~---~h~s~~~~~~~~G--~~v~~v~~~~~~  187 (356)
                      .      -+-..+|+.||+.+++++.++             +++|+-.+.   .|-+.-.-....|  .+++..++|+++
T Consensus        90 a------nVQPhSGs~AN~av~~All~p-------------GDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et  150 (413)
T COG0112          90 A------NVQPHSGSQANQAVYLALLQP-------------GDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPET  150 (413)
T ss_pred             c------ccCCCCchHHHHHHHHHHcCC-------------CCeEecccCCCCCcccCCCCCCccceeEEeEeccccccc
Confidence            2      244557899999999998764             567764443   3443332222223  457777888777


Q ss_pred             cccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCC
Q 018437          188 YVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP  266 (356)
Q Consensus       188 ~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  266 (356)
                      +.+|.|++++.+.+ +|++|+  .|.+..-...|++++.++|++.      |.+|.+|.|+-.++.  .....+-  .++
T Consensus       151 ~~IDyD~~~k~a~e~kPK~ii--~G~SaY~r~id~~~~reIad~V------GA~L~~DmAHiaGLV--A~G~~p~--P~~  218 (413)
T COG0112         151 GLIDYDEVEKLAKEVKPKLII--AGGSAYSRPIDFKRFREIADEV------GAYLMVDMAHVAGLI--AGGVHPN--PLP  218 (413)
T ss_pred             CccCHHHHHHHHHHhCCCEEE--ECccccccccCHHHHHHHHHHh------CceEEehHHHHHHHH--hcccCCC--CCC
Confidence            99999999998875 788776  3434434566899999999999      999999999754444  1222221  245


Q ss_pred             CceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHH
Q 018437          267 LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFIS  346 (356)
Q Consensus       267 ~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~  346 (356)
                      .+|.++.+.||.+.+|.| |++++++.++. ..+.. .-+++       ++|-+-...+++...+++.....++++..++
T Consensus       219 ~AdvVTtTTHKTlrGPrG-G~Il~~~eel~-kkin~-aVFPg-------~qggpl~HviAakaVa~~Eal~p~fk~Ya~q  288 (413)
T COG0112         219 HADVVTTTTHKTLRGPRG-GIILTNDEELA-KKINS-AVFPG-------LQGGPLMHVIAAKAVAFKEALEPEFKEYAKQ  288 (413)
T ss_pred             ccceEeCCcccCCCCCCc-eEEEeccHHHH-HHhhh-hcCCc-------cCCChHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            799999999999999998 78877763332 11110 11111       2233334557777888888888888888888


Q ss_pred             HHhccCccc
Q 018437          347 SLKVCPFLV  355 (356)
Q Consensus       347 ~~~~a~~l~  355 (356)
                      ..++|+.|+
T Consensus       289 Vv~NAkaLA  297 (413)
T COG0112         289 VVKNAKALA  297 (413)
T ss_pred             HHHHHHHHH
Confidence            888877664

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.67  E-value=1.9e-15  Score=146.38  Aligned_cols=201  Identities=12%  Similarity=0.011  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           70 PECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        70 ~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +.+.+++.+.... ....|....|..++++++.+++.+..+...+. +...+++|+|+++|+.+++.++..-        
T Consensus        47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~-~~i~v~iT~Ga~~al~~~~~~l~~~--------  117 (396)
T PRK09257         47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAA-GRVATVQTPGGTGALRVGADFLKRA--------  117 (396)
T ss_pred             HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCccccc-CeEEEEecCCccHHHHHHHHHHHHh--------
Confidence            5677777776643 22346666788999999888887654432111 1112389999999999998655320        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEe-cCCccccCHHHHHHHHhh---CceEEEEecCCCcccccC---CH
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFE---DV  221 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~---~i  221 (356)
                         ..+++|++++|+|+.+..+++..|++++.+|+ +++++.+|+++|++++..   +++++++++++||||.+-   .+
T Consensus       118 ---~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~  194 (396)
T PRK09257        118 ---FPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQW  194 (396)
T ss_pred             ---CCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHH
Confidence               01579999999999999999999999999998 444589999999998863   356777799999999984   46


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-c-cccc--CCCceEEEEcCCcCCCC-CcCeeEEEE
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFR--LPLVKSINVSGHKYGLV-YAGVGWVVW  290 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~--~~~~Ds~~~~~hK~l~~-P~g~g~l~~  290 (356)
                      ++|.++|++|      ++++++|.+|..+.... .... . ..+.  .++ -.+..|+.|.++. ...+|++++
T Consensus       195 ~~l~~~a~~~------~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~~~-vi~i~SfSK~~~~~GlRiG~~~~  260 (396)
T PRK09257        195 DELAELLKER------GLIPFLDIAYQGFGDGL-EEDAYGLRAFAAAGLE-LLVASSFSKNFGLYGERVGALSV  260 (396)
T ss_pred             HHHHHHHHhC------CcEEEEeccccccccch-HHHHHHHHHHHhcCCc-EEEEEEcCCcCccccccceeEEE
Confidence            7888999999      99999999998754210 0000 0 0111  112 2445668998764 688999874

>PRK05839 hypothetical protein; Provisional

Probab=99.67  E-value=9.7e-15  Score=140.33  Aligned_cols=211  Identities=11%  Similarity=-0.009  Sum_probs=147.4

Q ss_pred             CCCCcccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHH
Q 018437           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (356)
Q Consensus        54 ~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (356)
                      +++.++|..+.++. +++.+.+++.+... ....|....+..++++++.+++++.+|.+.+   ...+++|+|+++++..
T Consensus        23 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~---~~~I~it~G~~~al~~   98 (374)
T PRK05839         23 EYKGLDLTIGEPQFETPKFIQDALKNNAH-LLNKYPKSAGEESLREAQRGFFKRRFKIELK---ENELIPTFGTREVLFN   98 (374)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCC---cceEEEecCcHHHHHH
Confidence            44556666555553 34677777765543 2334444557788999999999999886532   1458999999999887


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecC
Q 018437          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      ++.++...           ..++.|+++.|+|..+...++..|++++.+|+++ +.+.+|+++.+  + +++++|++++|
T Consensus        99 ~~~~~~~~-----------~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~i~nP  164 (374)
T PRK05839         99 FPQFVLFD-----------KQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVILNSP  164 (374)
T ss_pred             HHHHHhcC-----------CCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccEEEEeCC
Confidence            77665320           1247899999999999999999999999999974 34777765432  3 46889999999


Q ss_pred             CCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-ccc-------cCCCceEEEEcCCcC-C
Q 018437          212 STLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF-------RLPLVKSINVSGHKY-G  279 (356)
Q Consensus       212 ~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-------~~~~~Ds~~~~~hK~-l  279 (356)
                      +||||++-   .+++|.++|+++      ++++++|++|+.+...  .+... ...       ..++ -.+..|..|. +
T Consensus       165 ~NPTG~~~s~~~l~~i~~~~~~~------~~~ii~DE~Y~~~~~~--~~~~s~~~~~~~~~~~~~~~-vi~~~SfSK~~~  235 (374)
T PRK05839        165 NNPTGRTLSLEELIEWVKLALKH------DFILINDECYSEIYEN--TPPPSLLEASILVGNESFKN-VLVINSISKRSS  235 (374)
T ss_pred             CCCcCcccCHHHHHHHHHHHHHc------CCEEEeccchhhcccC--CCCCCHhhhhcccCccccCc-EEEEeccccccC
Confidence            99999984   466777888899      9999999999874321  01100 000       0012 1344568995 6


Q ss_pred             CCCcCeeEEEEe
Q 018437          280 LVYAGVGWVVWR  291 (356)
Q Consensus       280 ~~P~g~g~l~~~  291 (356)
                      .....+|+++..
T Consensus       236 ~~GlRiG~ii~~  247 (374)
T PRK05839        236 APGLRSGFIAGD  247 (374)
T ss_pred             CccceeEEEecC
Confidence            677899999863

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.67  E-value=3.2e-15  Score=146.37  Aligned_cols=191  Identities=14%  Similarity=0.032  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcC
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (356)
                      |.+.+++..... ....|....+..++++.+.+++.+..+.+      .++++|+|+++++.+++.++.++         
T Consensus       101 p~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~------~~Iiit~G~~~al~~~~~~l~~p---------  164 (431)
T PRK15481        101 PDLSRYFARLSR-TPRLYGDAPVSPELHAWAARWLRDDCPVA------FEIDLTSGAIDAIERLLCAHLLP---------  164 (431)
T ss_pred             HHHHHHHHHhhh-hhhhcCCcCCCHHHHHHHHHHHhhccCCc------CeEEEecCcHHHHHHHHHHhCCC---------
Confidence            455566554432 22334444455667776666655433211      24899999999999999887653         


Q ss_pred             CCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEe-cCCCcccccCCHH---HHH
Q 018437          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAI-LGSTLTGEFEDVK---LLH  225 (356)
Q Consensus       150 ~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~-~~~~~tG~~~~i~---~I~  225 (356)
                          ++.|++++|+|..+...++..|++++.||++++  .+|+++|++++++++++++++ +|+||||.+.+.+   +|.
T Consensus       165 ----gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~--g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~  238 (431)
T PRK15481        165 ----GDSVAVEDPCFLSSINMLRYAGFSASPVSVDAE--GMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALR  238 (431)
T ss_pred             ----CCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCC--CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHH
Confidence                579999999999999999999999999999764  489999999998888888887 9999999997775   888


Q ss_pred             HHHHHhhhccCCCCcEEEecccccccccccCCCCc-ccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       226 ~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      ++|++++     ++|+++|++|+.+..+   +... .....++ -.+.-|+.|.++....+|+++..
T Consensus       239 ~la~~~~-----~~~ii~De~Y~~~~~~---~~~~~~~~~~~~-vi~~~SfSK~~~~GlRiG~~i~~  296 (431)
T PRK15481        239 NLLARYP-----QVLVIIDDHFALLSSS---PYHSVIPQTTQR-WALIRSVSKALGPDLRLAFVASD  296 (431)
T ss_pred             HHHHhcC-----CceEEecCchhhhccC---CCCCCCcCCCCC-EEEEeeeccccCCCceeEEEeCC
Confidence            9998873     7899999999876431   1111 1111111 24455689988766788988753

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.67  E-value=7.1e-16  Score=147.66  Aligned_cols=157  Identities=16%  Similarity=0.087  Sum_probs=120.7

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----  166 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----  166 (356)
                      |....+|    +.++++.|.+.       .++++||++|+..++ .+..+             +++|+++.+.|.+    
T Consensus        52 pt~~~le----~~la~l~g~~~-------~~~~~sG~~ai~~~~-~ll~~-------------Gd~Vl~~~~~y~~t~~~  106 (366)
T PRK08247         52 PTRGVLE----QAIADLEGGDQ-------GFACSSGMAAIQLVM-SLFRS-------------GDELIVSSDLYGGTYRL  106 (366)
T ss_pred             chHHHHH----HHHHHHhCCCc-------EEEEcCHHHHHHHHH-HHhCC-------------CCEEEEecCCcCcHHHH
Confidence            3444555    45999999975       578888998887654 33221             5789999998875    


Q ss_pred             HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                      +...+...|++++.++.      .|++++++++++++++|++++|+||+|.+.|+++|.++|+++      ++++++|++
T Consensus       107 ~~~~~~~~G~~v~~vd~------~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~------g~~lIvD~t  174 (366)
T PRK08247        107 FEEHWKKWNVRFVYVNT------ASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKH------GLLLIVDNT  174 (366)
T ss_pred             HHHHhhccCceEEEECC------CCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHc------CCEEEEECC
Confidence            34455668998888864      278999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      |+..+.  ..   +.   ..++|.+..|.+|+++++.+  .|+++.++
T Consensus       175 ~~~~~~--~~---p~---~~g~di~i~S~sK~~~g~~d~~~G~iv~~~  214 (366)
T PRK08247        175 FYTPVL--QR---PL---EEGADIVIHSATKYLGGHNDVLAGLVVAKG  214 (366)
T ss_pred             Cccccc--cC---ch---hcCCcEEEeecceeccCCCceeeeEEecCh
Confidence            965332  11   11   13789999999999977654  56666543

>PRK15029 arginine decarboxylase; Provisional

Probab=99.67  E-value=1.5e-15  Score=154.78  Aligned_cols=169  Identities=16%  Similarity=0.060  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCC
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV  176 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~  176 (356)
                      -.+..+..|++||.+.      .-.+++|+|.+|..++.+++.+             +++|+++..+|-|+.+++.+.|+
T Consensus       207 I~eAq~~aA~~fgA~~------t~FlvNGST~gn~a~i~a~~~~-------------gd~Vlv~RN~HKSv~~al~L~ga  267 (755)
T PRK15029        207 FGESEKYAARVFGADR------SWSVVVGTSGSNRTIMQACMTD-------------NDVVVVDRNCHKSIEQGLILTGA  267 (755)
T ss_pred             HHHHHHHHHHHhCCCc------EEEEeCChhHHHHHHHHHhcCC-------------CCEEEeecccHHHHHHHHHHcCC
Confidence            3466777999999985      2578889999999888887653             67999999999999999999999


Q ss_pred             eeEEEEecCCc----cccC-----HHHHHHHHhhC--ce--------EEEEecCCCcccccCCHHHHHHHHHHhhhccCC
Q 018437          177 ELKEVKLEEGY----YVMN-----PVKAVELVDEN--TI--------CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW  237 (356)
Q Consensus       177 ~v~~v~~~~~~----~~~d-----~~~L~~~i~~~--~~--------~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~  237 (356)
                      .+++++...+.    +.++     ++.++++|.+.  .+        ++++++||.. |.+.|+++|+++|+++      
T Consensus       268 ~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~-Gv~~di~~I~~~~h~~------  340 (755)
T PRK15029        268 KPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD-GVCYNAKEAQDLLEKT------  340 (755)
T ss_pred             eEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCc-ceeeCHHHHHHHHHhc------
Confidence            99999754211    3445     89999999652  23        8999999887 9999999999999999      


Q ss_pred             CCcEEEecccccccccccCCCCc--ccc-----cCCCce-EEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          238 DTPIHVDAASGGFIAPFLYPDLE--WDF-----RLPLVK-SINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       238 ~~~l~vD~a~~~~~~~~~~~~~~--~~~-----~~~~~D-s~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      +++++||+|+|+.+.  +.+..+  .-+     ...|+| .++-|.||.+.+-..++++.+++.
T Consensus       341 ~~~llvDEAhGah~~--F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~  402 (755)
T PRK15029        341 SDRLHFDEAWYGYAR--FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG  402 (755)
T ss_pred             CCeEEEECccccccc--cCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence            999999999998654  333222  112     115788 888999999999999999999764

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.67  E-value=2.2e-15  Score=146.60  Aligned_cols=154  Identities=18%  Similarity=0.121  Sum_probs=122.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhh
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYF  174 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~  174 (356)
                      ++.+.+++++|.+.       .+++++|++|+..++.++..+             +++|+++.+.|..    +...++..
T Consensus        61 ~le~~lA~l~g~~~-------~v~~~sG~~Ai~~al~~l~~~-------------Gd~Vl~~~~~y~~t~~~~~~~~~~~  120 (418)
T TIGR01326        61 VLEQRIAALEGGVA-------ALAVASGQAAITYAILNLAQA-------------GDNIVSSSYLYGGTYNLFKHTLKRL  120 (418)
T ss_pred             HHHHHHHHHhCCCe-------EEEEccHHHHHHHHHHHHhCC-------------CCEEEEECCCcHHHHHHHHHHHHHc
Confidence            44555999999754       689999999999998877542             5789998887744    44556778


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      |++++.++.+      |++++++++++++++|++.+++||+|.+.|+++|.++|+++      ++++++|++|+.+..  
T Consensus       121 G~~v~~v~~~------d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~------~i~livD~t~~~~~~--  186 (418)
T TIGR01326       121 GIEVRFVDPD------DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAH------GVPLIVDNTFATPYL--  186 (418)
T ss_pred             CcEEEEECCC------CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECCCchhhc--
Confidence            9998888742      78999999998999999999999999999999999999999      999999999975422  


Q ss_pred             cCCCCcccccCCCceEEEEcCCcCCCCC-cCeeEEEEeC
Q 018437          255 LYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       255 ~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~  292 (356)
                      ..   +.   ..++|.++.|++|+++++ ...|.+++..
T Consensus       187 ~~---~l---~~g~Divv~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       187 CR---PI---DHGADIVVHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             CC---ch---hcCCeEEEECccccccCCccceEEEEEec
Confidence            11   11   237899999999998653 3467777754

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.67  E-value=5.6e-15  Score=143.66  Aligned_cols=221  Identities=11%  Similarity=-0.016  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHhhhcCCC-CcccccccCCC-ChHHHHHHHHHHhcc-----cCCCcccCcchHHHHHHHHHHHHHHhCCC
Q 018437           39 KEAAYQVINDELMLDGNP-RLNLASFVTTW-MEPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNTP  111 (356)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~-~~~l~~~~~~~-~~~~v~~~i~~~~~~-----~~~~~~~~~~~~~le~~~~~~la~l~g~~  111 (356)
                      ..++.+.+++....+..+ .++|+.+.+.. +++.+.+++.+++..     ....|...++...+++.+.+++.+..|++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~   96 (409)
T PRK07590         17 FPEIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCD   96 (409)
T ss_pred             HHHHHHHHHHHhhhcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCc
Confidence            455655555544333222 34666666554 346778887776653     22345566788899999998888777765


Q ss_pred             CCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe-----------eEE
Q 018437          112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-----------LKE  180 (356)
Q Consensus       112 ~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~-----------v~~  180 (356)
                      .+.   .++++|+|+++++.+.+ .+..+             +++|+++.|+|..+...++..|..           ++.
T Consensus        97 ~~~---~~I~it~Ga~~al~~l~-~~~~~-------------gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~  159 (409)
T PRK07590         97 ISA---DEIFISDGAKCDTGNIL-DIFGP-------------DNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVY  159 (409)
T ss_pred             CCh---hhEEECCCHHHHHHHHH-HhcCC-------------CCEEEEeCCCCcchHHHHHHcCCcccccccccccceeE
Confidence            422   45899999999987643 33221             578999999999999999999987           888


Q ss_pred             EEecCC-ccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccC
Q 018437          181 VKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY  256 (356)
Q Consensus       181 v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~  256 (356)
                      +|++++ .+..|.+      ++++++|++++|+||||.+-+   +++|.++|+++      ++++++|++|+.+...   
T Consensus       160 v~~~~~~~~~~d~~------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~------~~~iI~De~Y~~~~~~---  224 (409)
T PRK07590        160 LPCTAENNFVPELP------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKEN------GSLILFDAAYEAFISD---  224 (409)
T ss_pred             eecccccCCcccCc------ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHc------CeEEEEEccchhhccC---
Confidence            998743 3555532      157889999999999999854   56788889999      9999999999875431   


Q ss_pred             CCCccccc-CCCc---eEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          257 PDLEWDFR-LPLV---KSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       257 ~~~~~~~~-~~~~---Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ......+. ..+.   -.+.-|+.|.++ ....+|+++..
T Consensus       225 ~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~  264 (409)
T PRK07590        225 PSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVP  264 (409)
T ss_pred             CCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcC
Confidence            11111111 2221   123457899874 66789999874

>PRK08175 aminotransferase; Validated

Probab=99.66  E-value=1.5e-14  Score=140.05  Aligned_cols=207  Identities=13%  Similarity=0.021  Sum_probs=146.1

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      ++|..+.+.. +++.+.+.+.+.+.. ....|....+..++++++.+++.+.+|.+.+.  ...+++|+|+++++...+.
T Consensus        32 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~~i~~t~G~~~~l~~~~~  109 (395)
T PRK08175         32 IDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDP--ESEAIVTIGSKEGLAHLML  109 (395)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEccCcHHHHHHHHH
Confidence            3444444433 234455555554432 23445556688899999999999888875421  1248899999999988777


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh---CceEEEEecCC
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGS  212 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~  212 (356)
                      ++.++             +++|+++.|+|..+...++..|++++.||++++  ..++++|+++++.   ++++|++++|+
T Consensus       110 ~~~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~l~~~l~~~~~~~~~v~i~~p~  174 (395)
T PRK08175        110 ATLDH-------------GDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEG--VDFFNELERAIRESYPKPKMMILGFPS  174 (395)
T ss_pred             HhCCC-------------CCEEEEcCCCCcchHHHHHHcCCeEEEEecccC--CCcHHHHHHHHhhccCCceEEEEeCCC
Confidence            66432             579999999999988888999999999999753  3357888888863   68899999999


Q ss_pred             CcccccCCH---HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CC---CceEEEEcCCcCCCCC-cC
Q 018437          213 TLTGEFEDV---KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LP---LVKSINVSGHKYGLVY-AG  284 (356)
Q Consensus       213 ~~tG~~~~i---~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~---~~Ds~~~~~hK~l~~P-~g  284 (356)
                      ||||.+-+.   ++|.++|+++      ++++++|.+|+.+...   +.....+. .+   ....+..+..|.++.| ..
T Consensus       175 NPtG~~~~~~~~~~i~~~a~~~------~i~ii~De~y~~l~~~---~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlR  245 (395)
T PRK08175        175 NPTAQCVELEFFEKVVALAKRY------DVLVVHDLAYADIVYD---GWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWR  245 (395)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHc------CcEEEEecchHhhccC---CCCCcchhcCCCcccCEEEEeeccccccCcchh
Confidence            999998776   7899999999      9999999999865431   11111111 11   2224457789987533 56


Q ss_pred             eeEEEE
Q 018437          285 VGWVVW  290 (356)
Q Consensus       285 ~g~l~~  290 (356)
                      +|+++.
T Consensus       246 iG~~~~  251 (395)
T PRK08175        246 IGFMVG  251 (395)
T ss_pred             heeeeC
Confidence            888865

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.66  E-value=5.4e-15  Score=143.89  Aligned_cols=150  Identities=18%  Similarity=0.081  Sum_probs=115.1

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+    .++++.|.+.       .+++++|++|+..++.++..+             +++|+++.+.|.....
T Consensus        57 ~pt~~~Le~----~lA~l~g~~~-------~l~~ssG~~Ai~~al~al~~~-------------Gd~Vl~~~~~Y~~t~~  112 (425)
T PRK06084         57 NPTNDVLEQ----RVAALEGGVG-------ALAVASGMAAITYAIQTIAEA-------------GDNIVSVAKLYGGTYN  112 (425)
T ss_pred             CchHHHHHH----HHHHHhCCCc-------eeEehhHHHHHHHHHHHHhCC-------------CCEEEEeCCCcchHHH
Confidence            345455554    4888888653       578889999999999887543             5789998887764333


Q ss_pred             HHH----hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 FAR----YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~~~----~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .+.    ..|+++.+++.      .|+++|++++++++++|++++|+||+|.+.|+++|.++|+++      ++++++|+
T Consensus       113 ~~~~~l~~~gi~v~~~d~------~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~------~i~vVvD~  180 (425)
T PRK06084        113 LLAHTLPRIGIETRFAAH------DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRH------GVPLIVDN  180 (425)
T ss_pred             HHHHhcccceeEEEEECC------CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHc------CCEEEEEC
Confidence            332    24666655542      389999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA  283 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~  283 (356)
                      +++.+..  ..   +.   ..++|.+..|.|||++++.
T Consensus       181 a~a~~~~--~~---p~---~~gaDivv~S~tK~l~G~g  210 (425)
T PRK06084        181 TVATPVL--CR---PF---EHGADIVVHSLTKYIGGHG  210 (425)
T ss_pred             CCccccc--CC---hh---hcCCCEEEECchhcccccc
Confidence            9985433  11   11   2379999999999997763

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.66  E-value=4.2e-15  Score=142.88  Aligned_cols=197  Identities=15%  Similarity=0.036  Sum_probs=142.6

Q ss_pred             CChHHHHHHHHHHhccc--CCCcccCcchHHHHHHHHHHHHHHhC----CCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKN--YVDMDEYPVTTELQNRCVNMIAHLFN----TPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~le~~~~~~la~l~g----~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      ++++.+.+++.++++.+  ...|. .++..++++++.+++.+.+|    +++     ..+++|+|+++++..++.+....
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~-----~~I~it~Ga~~al~~~~~~~~~~  114 (374)
T PRK02610         41 DLPPDLKQKLAWLYQQGIESNRYP-DGGHEALKQAIAEYVNESAAGSSQITP-----ANISVGNGSDELIRSLLIATCLG  114 (374)
T ss_pred             CCCHHHHHHHHHHHhhcccccCCC-CCchHHHHHHHHHHhCccccccCCCCH-----HHEEEcCChHHHHHHHHHHHcCC
Confidence            34568888887766543  22332 35777888887777776543    333     34889999999998777665432


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh----hCceEEEEecCCCccc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTG  216 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG  216 (356)
                                  .++.|+++.|+|..+...++..|++++.++++++++.+|+++|+++++    +++++|+++.|+||||
T Consensus       115 ------------g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG  182 (374)
T PRK02610        115 ------------GEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTG  182 (374)
T ss_pred             ------------CCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCC
Confidence                        123799999999999999999999999999876558999999999987    3789999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCC-CCCcCeeEEEEe
Q 018437          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYG-LVYAGVGWVVWR  291 (356)
Q Consensus       217 ~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l-~~P~g~g~l~~~  291 (356)
                      .+.+.+++.++++-. +    ++++++|++|..+..  . . ....+. .+++ .+.-|+.|.+ .....+|+++..
T Consensus       183 ~~~s~~~l~~l~~~~-~----~~~iI~De~Y~~~~~--~-~-~~~~~~~~~~~-ivi~SfSK~~g~~GlRiG~~v~~  249 (374)
T PRK02610        183 NPLTAAELEWLRSLP-E----DILVVIDEAYFEFSQ--T-T-LVGELAQHPNW-VILRTFSKAFRLAAHRVGYAIGH  249 (374)
T ss_pred             CCCCHHHHHHHHhcc-C----CcEEEEeccccccCc--c-c-hHHHHhcCCCE-EEEEecchhccCcccceeeeecC
Confidence            998888877776421 1    799999999986532  0 0 001111 1122 3456789987 566889999863

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.66  E-value=6.1e-16  Score=147.37  Aligned_cols=166  Identities=16%  Similarity=0.072  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~  177 (356)
                      .++++++++.+|++++     .+++|+|+++++.+++.++..+            +++.|+++.|+|..|...++..|++
T Consensus        60 ~~l~~~~a~~~g~~~~-----~I~~~~Gs~e~i~~~~~~~~~~------------g~~~vli~~P~y~~y~~~~~~~G~~  122 (351)
T PRK01688         60 KAVIENYAAYAGVKPE-----QVLVSRGADEGIELLIRAFCEP------------GKDAILYCPPTYGMYSVSAETIGVE  122 (351)
T ss_pred             HHHHHHHHHHhCCCHH-----HEEEcCCHHHHHHHHHHHhcCC------------CCCEEEEcCCCHHHHHHHHHHcCCE
Confidence            3677789999999873     4899999999999998876432            1268999999999999999999999


Q ss_pred             eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCC
Q 018437          178 LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP  257 (356)
Q Consensus       178 v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~  257 (356)
                      ++.+|++++ +.+|++++++++ +++++|++++||||||.+.+.+++.++++..++    +.++++|++|..+..    .
T Consensus       123 ~~~v~~~~~-~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~----~~~vivDEay~~f~~----~  192 (351)
T PRK01688        123 IRTVPTLDN-WQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRG----KAIVVADEAYIEFCP----Q  192 (351)
T ss_pred             EEEeecCCC-CCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC----CcEEEEECchhhcCC----C
Confidence            999999864 899999999988 578999999999999999999999888886532    578999999976532    1


Q ss_pred             CCcccc-c-CCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          258 DLEWDF-R-LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       258 ~~~~~~-~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ....++ . .+. -.+.-++.|+++ ++..+|+++..
T Consensus       193 ~s~~~~~~~~~n-~iv~rSfSK~~glaGlRiGy~i~~  228 (351)
T PRK01688        193 ASLAGWLAEYPH-LVILRTLSKAFALAGLRCGFTLAN  228 (351)
T ss_pred             CChHHHHhhCCC-EEEEecchHhhcCHHHHHhHHhCC
Confidence            000111 1 122 234456889764 44567888764

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.66  E-value=2.9e-15  Score=148.59  Aligned_cols=180  Identities=14%  Similarity=0.017  Sum_probs=137.3

Q ss_pred             cccCcchHHHHHHHHHHHHHHhC----CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCC
Q 018437           87 MDEYPVTTELQNRCVNMIAHLFN----TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN  162 (356)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g----~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~  162 (356)
                      |....|..++++++.+++.+.+|    +++     ..+++|+|+++++.+++.++.++             ++.|+++.|
T Consensus        90 y~~~~G~~~LR~aiA~~l~~~~g~~v~v~p-----e~Ivit~Ga~~al~~l~~~l~~p-------------GD~Vlv~~P  151 (496)
T PLN02376         90 FQDYHGLKKFRQAIAHFMGKARGGKVTFDP-----ERVVMSGGATGANETIMFCLADP-------------GDVFLIPSP  151 (496)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHhCCCCcCCh-----hhEEEccchHHHHHHHHHHhCCC-------------CCEEEECCC
Confidence            34456888999999999998888    444     35899999999999999988653             578999999


Q ss_pred             CcchHHHHHH-hhCCeeEEEEecC-CccccCHHHHHHHHh------hCceEEEEecCCCcccccCC---HHHHHHHHHHh
Q 018437          163 VQVCWEKFAR-YFEVELKEVKLEE-GYYVMNPVKAVELVD------ENTICVAAILGSTLTGEFED---VKLLHDLLTKK  231 (356)
Q Consensus       163 ~h~s~~~~~~-~~G~~v~~v~~~~-~~~~~d~~~L~~~i~------~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~  231 (356)
                      +|..+...+. ..|++++.||++. +++.+|++++++++.      .++++|++++|+||||.+-+   +++|.++|+++
T Consensus       152 ~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~  231 (496)
T PLN02376        152 YYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRK  231 (496)
T ss_pred             CccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHc
Confidence            9999998887 4799999999964 348999999987642      36788999999999999965   56788899999


Q ss_pred             hhccCCCCcEEEecccccccccccCCCCccccc-C----C----Cce--EEEEcCCcCCC-CCcCeeEEEEeCC
Q 018437          232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L----P----LVK--SINVSGHKYGL-VYAGVGWVVWRTK  293 (356)
Q Consensus       232 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~----~----~~D--s~~~~~hK~l~-~P~g~g~l~~~~~  293 (356)
                            ++++++|++|+.++..  .+. ...+. +    .    ..+  .+..+..|.++ ....+|+++..++
T Consensus       232 ------~i~lI~DEiY~~~~f~--~~~-~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~  296 (496)
T PLN02376        232 ------NIHLVVDEIYAATVFA--GGD-FVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFND  296 (496)
T ss_pred             ------CCEEEEEcCccccccC--CCC-cccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCH
Confidence                  9999999999875431  111 01110 0    0    112  23568999875 5689999987543

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.65  E-value=4.1e-15  Score=141.44  Aligned_cols=257  Identities=13%  Similarity=0.044  Sum_probs=149.8

Q ss_pred             CChHHHHHHHHHHhcccCC--Cc-----ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYV--DM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~--~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      ..+|.+.+++.+.+.....  +|     ..-....++|..+.+.+.++||+++++  ....+-..+|+.||+.++.++.+
T Consensus        31 ~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~--w~anvqp~SGs~An~av~~aLl~  108 (399)
T PF00464_consen   31 YMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKE--WYANVQPHSGSQANLAVYMALLK  108 (399)
T ss_dssp             ---HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTT--EEEE---SSHHHHHHHHHHHHT-
T ss_pred             ccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCccc--ceEEeecCCchHHHHHHHHHHHh
Confidence            3457888888766553221  11     112355789999999999999999632  23345666899999999999876


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCC---CcchHHHHHHh-------hCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEE
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGAN---VQVCWEKFARY-------FEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAA  208 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~---~h~s~~~~~~~-------~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~  208 (356)
                      +             +++|+.-+.   .|.+.......       ...+++..++|++++.+|.+++++.+.+ +|++|++
T Consensus       109 p-------------GD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~  175 (399)
T PF00464_consen  109 P-------------GDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIIC  175 (399)
T ss_dssp             T-------------T-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEE
T ss_pred             h-------------cCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEE
Confidence            4             567775443   35443322222       3456788888876799999999999875 7888775


Q ss_pred             ecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEE
Q 018437          209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       209 ~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      -..+.+  ...|++++.++|++.      |.++++|.++-.+..  .....+--  ++.+|.++.+.||.+.+|.| |++
T Consensus       176 G~S~y~--~~~d~~~~reIad~v------ga~l~~D~sH~~GLI--a~g~~~~P--~~~ADvvt~sThKtl~GPrg-giI  242 (399)
T PF00464_consen  176 GASSYP--RPIDFKRFREIADEV------GAYLMADISHIAGLI--AGGLFPNP--FPYADVVTGSTHKTLRGPRG-GII  242 (399)
T ss_dssp             E-SSTS--S---HHHHHHHHHHT------T-EEEEE-TTTHHHH--HTTSS--G--CCTSSEEEEESSGGG-SSS--EEE
T ss_pred             Cchhcc--CccCHHHHHHHHHhc------CcEEEecccccccce--ehheecCc--cccceEEEeeccccccccCc-eEE
Confidence            544433  446899999999999      999999999855544  12222212  35699999999999999987 888


Q ss_pred             EEeCCCCC--------ccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          289 VWRTKDDL--------PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       289 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ++++...-        ...+......    ..-+.++|......++++..+|+......++++.++..++|+.|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~I~~----avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La  313 (399)
T PF00464_consen  243 LTNKGSKNVDKKGKEIDEELAEKIDS----AVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALA  313 (399)
T ss_dssp             EES-SEEEE-TTS-EEEHHHHHHHHH----HHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCccccCCcccccHHHHHHHhcc----ccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            88722100        0000000000    001123345556567888888888666666677777777776654

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK03321 putative aminotransferase; Provisional

Probab=99.65  E-value=1.9e-15  Score=144.00  Aligned_cols=192  Identities=11%  Similarity=-0.017  Sum_probs=137.8

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+++.. ...|. .++...    +++.+++++|+++     ..+++|+|+++++..++.+...+       
T Consensus        36 ~~~~~~~a~~~~~~~-~~~y~-~~g~~~----lr~~ia~~~~~~~-----~~I~~~~G~~~~l~~~~~~~~~~-------   97 (352)
T PRK03321         36 PLPSVRAAIARAAAG-VNRYP-DMGAVE----LRAALAEHLGVPP-----EHVAVGCGSVALCQQLVQATAGP-------   97 (352)
T ss_pred             CCHHHHHHHHHHHHh-cCcCC-CCcHHH----HHHHHHHHhCcCH-----HHEEECCCHHHHHHHHHHHhcCC-------
Confidence            456788888766542 22222 235444    4455788888765     34889999998888777655332       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i  227 (356)
                            +++|+++.+++..+...++..|++++.+|++++ +.+|++++++++++++++|++++|+||||.+.|.++|.++
T Consensus        98 ------gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l  170 (352)
T PRK03321         98 ------GDEVIFAWRSFEAYPILVQVAGATPVQVPLTPD-HTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARF  170 (352)
T ss_pred             ------CCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCC-CCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence                  578999999988888888999999999999864 7899999999998889999999999999999999999999


Q ss_pred             HHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEE-EcCCcCCC-CCcCeeEEEEe
Q 018437          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSIN-VSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~-~~~hK~l~-~P~g~g~l~~~  291 (356)
                      |+++..    ++++++|++|+.+...   ......+.  ...-+.++ .|..|.++ ....+|+++..
T Consensus       171 ~~~~~~----~~~ii~De~y~~~~~~---~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~  231 (352)
T PRK03321        171 LDAVPA----DVLVVLDEAYVEYVRD---DDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGH  231 (352)
T ss_pred             HHhCCC----CeEEEEechHHHhccC---cCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCC
Confidence            997411    8999999999875431   11111111  11123343 46789875 33458888764

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.65  E-value=4e-15  Score=142.56  Aligned_cols=193  Identities=13%  Similarity=0.050  Sum_probs=137.0

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.... ...|... ..    .++++.+++++|+++     ..+++|+|+++++...+.++.++       
T Consensus        46 ~~~~~~~a~~~~~~~-~~~y~~~-~~----~~lr~~ia~~~~~~~-----~~i~~t~G~~~~l~~~~~~l~~~-------  107 (367)
T PRK02731         46 PSPKAIEAIRAAADE-LHRYPDG-SG----FELKAALAEKFGVDP-----ERIILGNGSDEILELLARAYLGP-------  107 (367)
T ss_pred             CCHHHHHHHHHHHHh-hcCCCCC-cH----HHHHHHHHHHhCcCH-----HHEEEcCCHHHHHHHHHHHhcCC-------
Confidence            356777877766542 2222222 22    245566888888875     24889999999887777665432       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i  227 (356)
                            +++|+++.++|..+...++..|++++.+|.+  ++.+|+++|++++++++++|++++|+||||.+.+.++|.++
T Consensus       108 ------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l  179 (367)
T PRK02731        108 ------GDEVIYSEHGFAVYPIAAQAVGAKPVEVPAK--DYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERF  179 (367)
T ss_pred             ------CCEEEEecCCHHHHHHHHHHcCCeEEEeccc--CCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHH
Confidence                  5789999999988888888899999999984  37899999999998889999999999999999999999999


Q ss_pred             HHHhhhccCCCCcEEEecccccccccccCC-CCcccccCCCce-EEEEcCCcCCC-CCcCeeEEEEeC
Q 018437          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYP-DLEWDFRLPLVK-SINVSGHKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~-~~~~~~~~~~~D-s~~~~~hK~l~-~P~g~g~l~~~~  292 (356)
                      ++.+.+    ++++++|++|..+...  .. ....+.....-+ .+..+..|.++ .+..+|+++..+
T Consensus       180 ~~~~~~----~~~li~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~  241 (367)
T PRK02731        180 LAGVPP----DVLVVLDEAYAEYVRR--KDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPP  241 (367)
T ss_pred             HHhCCC----CcEEEEECcHHHhccC--cCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCH
Confidence            987521    8999999999764431  10 011111111112 33346778753 446789998753

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.65  E-value=1.4e-15  Score=139.43  Aligned_cols=189  Identities=16%  Similarity=0.132  Sum_probs=128.2

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      .+.|++.+++..+-......|...+.+..+|+    ++++++|...       +.|+++||+||.+++.+.+++      
T Consensus        11 g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~----~~ae~~g~~a-------~~Fv~sGT~aN~lal~~~~~~------   73 (342)
T COG2008          11 GPTPEMREALAAANAVGDDVYGEDPTTNALEQ----RIAELFGKEA-------ALFVPSGTQANQLALAAHCQP------   73 (342)
T ss_pred             CCCHHHHHHHHhccccCCCCCCCCHHHHHHHH----HHHHHhCCce-------EEEecCccHHHHHHHHHhcCC------
Confidence            44578888887653233334566666655554    4889988843       899999999999999998764      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHH--HhhCCeeEEEEe-cCCccccCHHHHHHHHhh-------CceEEEEecCCCccc
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFA--RYFEVELKEVKL-EEGYYVMNPVKAVELVDE-------NTICVAAILGSTLTG  216 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~--~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~-------~~~~v~~~~~~~~tG  216 (356)
                             +..||+...+|.....+-  +.++-. .++++ +..++.+++++|+.+|.+       .+.+++.+..+ ..|
T Consensus        74 -------~~~vi~~~~aHi~~~E~Ga~~~~~~~-~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~t-e~G  144 (342)
T COG2008          74 -------GESVICHETAHIYTDECGAPEFFGGG-QKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTAT-EGG  144 (342)
T ss_pred             -------CCeEEEeccccceecccCcHHHHcCC-ceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccC-CCc
Confidence                   468999999997654432  233322 23333 324599999999998863       24555555555 779


Q ss_pred             ccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          217 EFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       217 ~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      ++-   .|++|.++||++      +++||+|||=-+-.+..+.+. ..++ ..++|++++++.|.++.|.| ++++.
T Consensus       145 tVy~l~el~~i~~~~k~~------~l~LHmDGAR~~nA~valg~~-~~~~-~~~~D~v~~~~tK~g~~~~g-Aiv~g  212 (342)
T COG2008         145 TVYPLDELEAISAVCKEH------GLPLHMDGARLANALVALGVA-LKTI-KSYVDSVSFCLTKGGGAPVG-AIVFG  212 (342)
T ss_pred             eecCHHHHHHHHHHHHHh------CCceeechHHHHHHHHHcCCC-HHHH-HhhCCEEEEecccCCcceee-eEEEc
Confidence            985   467788999999      999999998433223222211 1122 35899999999999987765 34433

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.65  E-value=2.3e-14  Score=136.05  Aligned_cols=204  Identities=16%  Similarity=0.065  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHhhhcC-CCCcccccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCC
Q 018437           40 EAAYQVINDELMLDG-NPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA  118 (356)
Q Consensus        40 ~~i~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~  118 (356)
                      ++.++.+++....-| .|..   .|..-..+|.+.++..++++...       +...+.+++.+.+++++|.+++     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~---~ylgl~~~~~~~~~~~~~~~~~~-------g~~~~~~~Le~~lA~~~g~~~e-----   72 (346)
T TIGR03576         8 EKALEIIREKISRGGRDSLY---DLTGLAGGFKIDEEDLELLETYV-------GPAIFEEKVQELGREHLGGPEE-----   72 (346)
T ss_pred             HHHHHHHHHHHhccCCcccc---ccccCCCChhHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHcCCCcc-----
Confidence            455666766655433 2322   33333445677777777765432       3457788888999999999652     


Q ss_pred             CeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEec---CCCcchHHHHHHhhCCeeEEEEecCCccccCHHHH
Q 018437          119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG---ANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKA  195 (356)
Q Consensus       119 ~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s---~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L  195 (356)
                      ..++++||+++|..++.++.++             +++|+++   .+.|.++...+++.|+++...        .|++++
T Consensus        73 ~ilv~~gg~~a~~~~~~al~~~-------------gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~--------~~l~~l  131 (346)
T TIGR03576        73 KILVFNRTSSAILATILALEPP-------------GRKVVHYLPEKPAHPSIPRSCKLAGAEYFES--------DELSEL  131 (346)
T ss_pred             eEEEECCHHHHHHHHHHHhCCC-------------CCEEEECCCCCCCchhHHHHHHHcCCEEecc--------CCHHHH
Confidence            3899999999999999887643             5677764   579999999999999875322        134444


Q ss_pred             HHHHhhCceEEEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEE
Q 018437          196 VELVDENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSIN  272 (356)
Q Consensus       196 ~~~i~~~~~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~  272 (356)
                      +.  .+++++|+++ +++++|.+   .|+++|+++|+++      ++++++|+||+.++.... ...  .....++|.++
T Consensus       132 ~~--~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~------~~~livDEAy~~~~~~~~-~~~--~~~~~~~divv  199 (346)
T TIGR03576       132 KK--IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSK------EAIVLVDDASGARVRRLY-GQP--PALDLGADLVV  199 (346)
T ss_pred             hh--CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHc------CCEEEEECCccccccccC-CCC--CHHHcCCcEEE
Confidence            33  2457777765 56888988   7899999999999      999999999987654211 111  11112568888


Q ss_pred             EcCCcCCCCCcCeeEEEEeC
Q 018437          273 VSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       273 ~~~hK~l~~P~g~g~l~~~~  292 (356)
                      .+.+|++.++. .|+++.++
T Consensus       200 ~s~SKalaG~r-~G~v~~~~  218 (346)
T TIGR03576       200 TSTDKLMDGPR-GGLLAGRK  218 (346)
T ss_pred             eccchhccccc-eEEEEeCH
Confidence            89999764554 58887643

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.65  E-value=2.1e-15  Score=146.45  Aligned_cols=186  Identities=13%  Similarity=-0.006  Sum_probs=132.0

Q ss_pred             CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeE--EeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCC
Q 018437           85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGV--GTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN  162 (356)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~--~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~  162 (356)
                      ..|....|..++++++.+|+.+..+.+.+.   ..++  .|.|+++|+..++.+++.-.          ..+++|++++|
T Consensus        66 ~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~---~~v~~~~t~G~~~al~~~~~~l~~~~----------~~Gd~Vlv~~P  132 (404)
T PTZ00376         66 KEYLPIEGLQSFIEAAQKLLFGEASYALAE---KRIATVQALSGTGALRLGFEFLKRFL----------PAGTTVYVSNP  132 (404)
T ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCcccccc---CeEEEeeccCcchHHHHHHHHHHHhc----------CCCCEEEEcCC
Confidence            456667788999999888886554332111   2244  58899999888776443210          12579999999


Q ss_pred             CcchHHHHHHhhCCeeEEEEec-CCccccCHHHHHHHHh---hCceEEEEecCCCcccccC---CHHHHHHHHHHhhhcc
Q 018437          163 VQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEET  235 (356)
Q Consensus       163 ~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~  235 (356)
                      +|+.+...++..|++++.+|+. ++++.+|++.+++++.   ++++++++++|+||||.+-   .+++|.++|++|    
T Consensus       133 ~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~----  208 (404)
T PTZ00376        133 TWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRK----  208 (404)
T ss_pred             CchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC----
Confidence            9999999999999999999994 3358999999999985   3457788899999999984   567788899999    


Q ss_pred             CCCCcEEEecccccccccccCCCC--cccccCCCce-EEEEcCCcCCC-CCcCeeEEE
Q 018437          236 GWDTPIHVDAASGGFIAPFLYPDL--EWDFRLPLVK-SINVSGHKYGL-VYAGVGWVV  289 (356)
Q Consensus       236 ~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~D-s~~~~~hK~l~-~P~g~g~l~  289 (356)
                        ++++++|.+|..+.........  ...+....-. .+..|+.|.++ ....+|+++
T Consensus       209 --~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~  264 (404)
T PTZ00376        209 --NLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALH  264 (404)
T ss_pred             --CcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEE
Confidence              9999999999875431000000  0111111112 34456899877 568899985

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.65  E-value=1.2e-15  Score=145.66  Aligned_cols=163  Identities=18%  Similarity=0.096  Sum_probs=125.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCee
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v  178 (356)
                      ++++.+++.+|++++     .+++|+|+++++.+++.++..+            ++++|+++.|+|..|...++..|+++
T Consensus        64 ~Lr~aia~~~~~~~~-----~I~it~Gs~~~i~~~~~~~~~~------------g~d~vlv~~P~y~~y~~~~~~~g~~v  126 (354)
T PRK04635         64 ELINAYSAYAGVAPE-----QILTSRGADEAIELLIRAFCEP------------GQDSIACFGPTYGMYAISAETFNVGV  126 (354)
T ss_pred             HHHHHHHHHhCcCHH-----HEEEeCCHHHHHHHHHHHhcCC------------CCCeEEEcCCChHHHHHHHHHcCCEE
Confidence            445557888899873     4899999999999998877542            12689999999999999999999999


Q ss_pred             EEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCC
Q 018437          179 KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD  258 (356)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~  258 (356)
                      +.+|++++ +.+|++.+++ + +++++|++++|+||||.+.+.+++.++++...     ++++++|++|..+..    ..
T Consensus       127 ~~v~~~~~-~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~-----~~~vivDeay~~~~~----~~  194 (354)
T PRK04635        127 KALPLTAD-YQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTP-----DAIVVVDEAYIEFCP----EY  194 (354)
T ss_pred             EEEecCCC-CCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCC-----CcEEEEeCchHhhcc----Cc
Confidence            99999764 8999999873 4 67899999999999999999999999998752     689999999976432    11


Q ss_pred             Cccccc--CCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          259 LEWDFR--LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       259 ~~~~~~--~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ...++.  .+++ .+.-+++|+++ ++..+|+++..
T Consensus       195 s~~~~~~~~~~~-iv~~S~SK~~~l~GlRlG~~i~~  229 (354)
T PRK04635        195 SVADLLASYPNL-VVLRTLSKAFALAGARCGFTLAN  229 (354)
T ss_pred             chHHHHhhCCCE-EEEechHHHhhhhHHHHhhhhCC
Confidence            111111  1222 34567999874 55668998764

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.64  E-value=4.7e-15  Score=142.33  Aligned_cols=195  Identities=14%  Similarity=0.003  Sum_probs=141.3

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.... ...|....+ .    ++++.+++++|+++     ..+++|+|+++++..++.++.++       
T Consensus        50 ~~~~~~~al~~~~~~-~~~Y~~~~g-~----~lr~~ia~~~~~~~-----~~i~~t~G~~~~l~~~~~~~~~~-------  111 (371)
T PRK05166         50 PSPAVRRAFADIAEL-LRLYPDPQG-R----ALREAIAARTGVPA-----DRIILGNGSEDLIAVICRAVLRP-------  111 (371)
T ss_pred             CCHHHHHHHHHHHHH-hhcCCCCcH-H----HHHHHHHHHhCcCH-----HHEEEcCCHHHHHHHHHHHhcCC-------
Confidence            456777777654432 222322222 2    45566888889875     34899999999998888776432       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i  227 (356)
                            +++|+++.|+|..+...++..|++++.++++++ +.+|+++|++++++++++|++++|+||||.+.+.+++.++
T Consensus       112 ------gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l  184 (371)
T PRK05166        112 ------GDRVVTLYPSFPLHEDYPTMMGARVERVTVTPD-LGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARV  184 (371)
T ss_pred             ------CCEEEEcCCChHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence                  578999999999999999999999999999864 8999999999998889999999999999999999988888


Q ss_pred             HHHhhhccCCCCcEEEecccccccccccCCCCc-cc-ccCCC-ceEEEEcCCcCCC-CCcCeeEEEEeCC
Q 018437          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WD-FRLPL-VKSINVSGHKYGL-VYAGVGWVVWRTK  293 (356)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~-~~~~~-~Ds~~~~~hK~l~-~P~g~g~l~~~~~  293 (356)
                      ++...+    ++++++|++|+.+...  .+... .. +.... --.+..|+.|.++ ....+|++++.++
T Consensus       185 ~~~~~~----~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~  248 (371)
T PRK05166        185 LDATPP----ETLIVVDEAYAEYAAG--DDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDP  248 (371)
T ss_pred             HHhCCC----CcEEEEECcHHHhcCC--cCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCH
Confidence            886421    7899999999875521  11111 11 11111 1234556899875 6678999877554

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.64  E-value=1.1e-14  Score=141.71  Aligned_cols=193  Identities=10%  Similarity=-0.031  Sum_probs=127.9

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcc---cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      +-.++|.+.+++.++++.......   ...+......++.+.+++++|.+.       .++.++|++||..++.++... 
T Consensus        58 ~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~-------~i~~~sG~~a~~~~i~~l~~~-  129 (410)
T PRK13392         58 GMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKES-------ALLFTSGYVSNDAALSTLGKL-  129 (410)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCC-------EEEECcHHHHHHHHHHHHhcC-
Confidence            334567888888877754321111   111222233466677999999653       455556688888888755321 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh----hCceEEEEecCCCcccc
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGE  217 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~  217 (356)
                                ..++.|+++...|.++...++..|++++.++.+      |.+.+++.+.    +++++|++++++|++|.
T Consensus       130 ----------~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~  193 (410)
T PRK13392        130 ----------LPGCVILSDALNHASMIEGIRRSGAEKQVFRHN------DLADLEEQLASVDPDRPKLIAFESVYSMDGD  193 (410)
T ss_pred             ----------CCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC------CHHHHHHHHHhccCCCCEEEEEeCCCCCCcc
Confidence                      013578887789999888888889988766532      3444555443    47889999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-cc-CCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR-LPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      +.|+++|.++|+++      ++++++|++|+.++... ....... .. ...+|.++.+.+|+++.+.  |+++.
T Consensus       194 ~~~l~~i~~l~~~~------~~~livDea~~~g~~g~-~g~g~~~~~~~~~~~div~~tlsK~~g~~G--G~~~~  259 (410)
T PRK13392        194 IAPIEAICDLADRY------NALTYVDEVHAVGLYGA-RGGGIAERDGLMDRIDMIQGTLAKAFGCLG--GYIAA  259 (410)
T ss_pred             cccHHHHHHHHHHc------CCEEEEECCccccCcCC-CCCchhhhccCCCCCcEEEEEChHhhhccc--chhhc
Confidence            99999999999999      99999999998443310 0000001 01 2357878789999876543  56654

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.64  E-value=1.4e-15  Score=140.28  Aligned_cols=190  Identities=18%  Similarity=0.206  Sum_probs=133.3

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +.|.+.+++..+.... -.|...+.+.++|+.    +++++|.+.       .+++++||.||..++.+...+       
T Consensus         7 ~~~~m~~a~~~a~~gd-~~Yg~D~~~~~l~~~----i~~l~g~e~-------a~f~~sGT~An~~al~~~~~~-------   67 (290)
T PF01212_consen    7 PTPAMLEAMAAANVGD-DAYGEDPTTARLEER----IAELFGKEA-------ALFVPSGTMANQLALRAHLRP-------   67 (290)
T ss_dssp             S-HHEEHHHHHTTSB--CCTTSSHHHHHHHHH----HHHHHTSSE-------EEEESSHHHHHHHHHHHHHHT-------
T ss_pred             CCHHHHHHHHccccCC-cccCCChhHHHHHHH----HHHHcCCCE-------EEEeCCCChHHHHHHHHHHhc-------
Confidence            5577888885443322 246666666666655    889999985       579999999999999998854       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHH---HHhhCCeeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCcc-cc
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKF---ARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLT-GE  217 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~---~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~t-G~  217 (356)
                            ...||+..++|......   ....|++++.|+.+++ +.+|+++|++.+.+      ++++|+++.+++.. |.
T Consensus        68 ------~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~-G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~  140 (290)
T PF01212_consen   68 ------GESVICADTAHIHFDETGAIEELSGAKLIPLPSDDD-GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGT  140 (290)
T ss_dssp             ------TEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTG-TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB
T ss_pred             ------CCceeccccceeeeeccchhhHhcCcEEEECCCccc-CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCe
Confidence                  46899999999865432   2346888888887653 89999999999976      46788888888875 55


Q ss_pred             c---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          218 F---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       218 ~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +   +++++|.++||++      |+++|.|||=-+-..... .....++ ..++|++++++.|.+++|.| ++++.++
T Consensus       141 ~~s~~el~ai~~~a~~~------gl~lhmDGARl~~a~~~~-~~~~~e~-~~~~D~v~~~~tK~~g~~~G-avl~~~~  209 (290)
T PF01212_consen  141 VYSLEELRAISELAREH------GLPLHMDGARLANAAAAL-GVSLAEI-AAGADSVSFGGTKNGGAPGG-AVLAGNK  209 (290)
T ss_dssp             ---HHHHHHHHHHHHHH------T-EEEEEETTHHHHHCHH-HHHHHHH-HTTSSEEEEETTSTT-SSSE-EEEEESH
T ss_pred             eCCHHHHHHHHHHHHhC------ceEEEEehhhHHHhhhcc-cccHHHH-hhhCCEEEEEEEcccccccc-eEEEech
Confidence            4   5788899999999      999999998321111000 0001122 25899999999999988776 5555543

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.64  E-value=6.2e-15  Score=141.31  Aligned_cols=179  Identities=14%  Similarity=0.119  Sum_probs=126.3

Q ss_pred             CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc
Q 018437           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV  165 (356)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~  165 (356)
                      .|..++...++|++    +++++|.+.       .+.|++||.|+.++..+..+             .+++|  +.++|.
T Consensus        66 ~yag~~s~~~lE~~----va~~~G~~~-------av~v~sGT~Al~ll~~l~l~-------------pGDeV--psn~~f  119 (450)
T TIGR02618        66 AYAGSRNFYHLERT----VRELYGFKY-------VVPTHQGRGAENLLSQIAIK-------------PGDYV--PGNMYF  119 (450)
T ss_pred             hhcCCCcHHHHHHH----HHHHHCCCe-------EEEcCCHHHHHHHHHHhCCC-------------CcCEE--CCceeH
Confidence            36677888888877    788889975       88999999997764322211             13454  668886


Q ss_pred             hHHHH-HHhhCCeeEEEEec---------CCccccCHHHHHHHHhhC----ceEEEEecCCCcc-ccc---CCHHHHHHH
Q 018437          166 CWEKF-ARYFEVELKEVKLE---------EGYYVMNPVKAVELVDEN----TICVAAILGSTLT-GEF---EDVKLLHDL  227 (356)
Q Consensus       166 s~~~~-~~~~G~~v~~v~~~---------~~~~~~d~~~L~~~i~~~----~~~v~~~~~~~~t-G~~---~~i~~I~~i  227 (356)
                      +-..+ +.+.|+.++-++.+         +.+|.+|+++|+++|+++    +.+|.+..++|.. |.+   .++++|.++
T Consensus       120 ~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~el  199 (450)
T TIGR02618       120 TTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVREL  199 (450)
T ss_pred             HHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHH
Confidence            65554 67788865555444         335899999999999863    3466777777765 677   678999999


Q ss_pred             HHHhhhccCCCCcEEEeccccccccccc-------CCCCcccc--c-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCc
Q 018437          228 LTKKNEETGWDTPIHVDAASGGFIAPFL-------YPDLEWDF--R-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (356)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~-------~~~~~~~~--~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~  297 (356)
                      |++|      |+++|.|+|....-.-|.       .+....++  . ...+|+++.|+||-+++|.| |+++++++++..
T Consensus       200 A~~~------Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~  272 (450)
T TIGR02618       200 CEAH------GIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQ  272 (450)
T ss_pred             HHHc------CCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHH
Confidence            9999      999999999754222111       11111111  1 34799999999999999997 788788865553

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.64  E-value=1.1e-14  Score=127.67  Aligned_cols=199  Identities=16%  Similarity=0.055  Sum_probs=152.4

Q ss_pred             HHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEE
Q 018437          101 VNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE  180 (356)
Q Consensus       101 ~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~  180 (356)
                      .+.+++++|+|.       .-+|.|+-++-+.++.+++.+             ++-|++...+||+..-+++..|++|..
T Consensus        67 ~~dlaeFlg~D~-------~R~t~GARe~KfavMhal~~~-------------gd~vV~D~~aHYttyvAAEragl~v~e  126 (382)
T COG1103          67 LEDLAEFLGMDE-------VRVTAGAREAKFAVMHALCKE-------------GDWVVVDSLAHYTTYVAAERAGLNVAE  126 (382)
T ss_pred             HHHHHHHhCCce-------eeecccchhhHHHHHHHhccC-------------CCEEEEcCcchHHHHHHHHhcCCeEEe
Confidence            334999999986       678999999999999888764             678999999999999999999999999


Q ss_pred             EEecC-CccccCHHHHHHHHhh-------CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc
Q 018437          181 VKLEE-GYYVMNPVKAVELVDE-------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       181 v~~~~-~~~~~d~~~L~~~i~~-------~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~  252 (356)
                      ||-.. ..+.++++...+.|++       .+.+..+|++....|.+.|.+.|+++|+++      ++++++.+||..+-+
T Consensus       127 Vp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~------gvPlllN~AYt~Grm  200 (382)
T COG1103         127 VPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREY------GVPLLLNCAYTVGRM  200 (382)
T ss_pred             cCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHc------CCceEeecceeeccc
Confidence            99643 2489999988877753       267788999999999999999999999999      999999999987666


Q ss_pred             cccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHH
Q 018437          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQF  332 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l  332 (356)
                      |       .+.+..++|+++.|+||.+-+-..||++.++. ++....+..+-.+....... .+.||-.+..++.+-+++
T Consensus       201 p-------vs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~e-E~ae~V~r~Sg~~~~~KEve-llGCT~rGapivTlmASf  271 (382)
T COG1103         201 P-------VSGKEIGADFIVGSGHKSMAASAPIGVLAMSE-EWAEIVLRRSGRAFPKKEVE-LLGCTVRGAPIVTLMASF  271 (382)
T ss_pred             c-------ccccccCCCEEEecCccchhccCCeeEEeehh-HHHHHHHhhcccccccceee-eecccccCchHHHHHhcC
Confidence            3       45556799999999999988888899998864 34322222221212111111 244665565566665555


Q ss_pred             HH
Q 018437          333 IR  334 (356)
Q Consensus       333 ~~  334 (356)
                      -.
T Consensus       272 P~  273 (382)
T COG1103         272 PH  273 (382)
T ss_pred             HH
Confidence            43

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.64  E-value=1.8e-14  Score=137.47  Aligned_cols=189  Identities=15%  Similarity=0.132  Sum_probs=135.4

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.+.. ...|. .++..    ++++.+++.+++++     ..+++|+|+++++..++.++ .        
T Consensus        33 ~p~~~~~a~~~~~~~-~~~Y~-~~~~~----~lr~~ia~~~~~~~-----~~i~it~Ga~~~l~~~~~~~-~--------   92 (354)
T PRK06358         33 VPESLKQAITENLDK-LVEYP-DPDYL----ELRKRIASFEQLDL-----ENVILGNGATELIFNIVKVT-K--------   92 (354)
T ss_pred             CCHHHHHHHHHHHHh-hhcCC-CccHH----HHHHHHHHHhCCCh-----hhEEECCCHHHHHHHHHHHh-C--------
Confidence            356777777766542 22222 22333    45555777778876     34899999999998887764 1        


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKL  223 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~  223 (356)
                            ++.|+++.|+|..+...++..|++++.+++++ +++.+| +++++.+.+++++|++++|+||||.+.+   +++
T Consensus        93 ------~~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~  165 (354)
T PRK06358         93 ------PKKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKK  165 (354)
T ss_pred             ------CCcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHH
Confidence                  24799999999999999999999999999974 347899 6666677777899999999999999965   778


Q ss_pred             HHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-cc-cc-CCCceEEEEcCCcCCC-CCcCeeEEEEeC
Q 018437          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WD-FR-LPLVKSINVSGHKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       224 I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~-~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~  292 (356)
                      |.++|+++      ++++++|++|..+...  ..... .. +. ..++ .+.-|+.|.++ ....+|+++..+
T Consensus       166 l~~~a~~~------~~~ii~De~Y~~~~~~--~~~~~~~~~~~~~~~v-i~~~S~SK~~gl~G~RiG~lv~~~  229 (354)
T PRK06358        166 ILDKCEKR------NIYLIIDEAFMDFLEE--NETISMINYLENFKNL-IIIRAFTKFFAIPGLRLGYGLTSN  229 (354)
T ss_pred             HHHHHHhc------CCEEEEeCcccccCCC--ccchhHHHhccCCCCE-EEEEechhhccCcchhheeeecCC
Confidence            88889999      9999999999865431  11000 11 11 1122 33456889876 778999998743

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.63  E-value=1.1e-14  Score=137.99  Aligned_cols=186  Identities=16%  Similarity=0.143  Sum_probs=135.7

Q ss_pred             CChHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      ++++.+.+++.+++.. ....|. .++...++    +++++.+|+++     ..+++|+|+++++...+.++  +     
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~Y~-~~g~~~lr----~~ia~~~~~~~-----~~I~~t~G~~~~l~~~~~~~--~-----   93 (337)
T PRK03967         31 DLPEELKEEIFEELKRVPFNRYP-HITSDPLR----EAIAEFYGLDA-----ENIAVGNGSDELISYLVKLF--E-----   93 (337)
T ss_pred             CCCHHHHHHHHHHhhcCccccCC-CCCHHHHH----HHHHHHhCcCc-----ceEEEcCCHHHHHHHHHHHh--C-----
Confidence            3446777777776643 233333 34554554    45777778776     34889999999987665443  1     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHH
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH  225 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~  225 (356)
                              +++|+++.|+|..+...++..|++++.|+++++ +.+|++.|++++ ++++++++++|+||||.+.+.++|.
T Consensus        94 --------gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~  163 (337)
T PRK03967         94 --------GKHIVITPPTFGMYSFYAKLNGIPVIDVPLKED-FTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEIL  163 (337)
T ss_pred             --------CCeEEEeCCChHHHHHHHHHcCCeEEEeecCCC-CCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHH
Confidence                    478999999999898888999999999999864 899999998875 5678888999999999999999999


Q ss_pred             HHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       226 ~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ++++ +      ++++++|++|..+..    ........ .+. -.+..|+.|.++ ....+|+++..
T Consensus       164 ~i~~-~------~~~ii~De~y~~~~~----~~~~~~~~~~~~-vi~l~S~SK~~~l~GlRiG~iv~~  219 (337)
T PRK03967        164 KVLE-T------GKPVVLDEAYAEFSG----KSLIGLIDEYPN-LILLRTFSKAFGLAGIRAGYAIAN  219 (337)
T ss_pred             HHHh-c------CCEEEEECchhhhcc----cchHHHHhhCCC-EEEEecchHhhcchhhhheeeecC
Confidence            9994 7      899999999986431    11000011 122 234467899876 55789999864

>PRK10534 L-threonine aldolase; Provisional

Probab=99.63  E-value=2.9e-15  Score=141.57  Aligned_cols=191  Identities=13%  Similarity=0.036  Sum_probs=125.8

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      .++|.+.+++.+... +...|...+...+++++    +++++|.+.       .++++||++++..++.+...+      
T Consensus        11 ~p~~~~~~a~~~~~~-~~~~Y~~~~~~~~L~~~----la~~~g~~~-------~~v~~~g~~a~~~~l~~~~~~------   72 (333)
T PRK10534         11 RPSRAMLEAMMAAPV-GDDVYGDDPTVNALQDY----AAELSGKEA-------ALFLPTGTQANLVALLSHCER------   72 (333)
T ss_pred             CCCHHHHHHHHhccC-CCcccCCCHHHHHHHHH----HHHHhCCCe-------EEEeCchHHHHHHHHHHhcCC------
Confidence            366788888876443 33344455566666655    788889875       578899999998888876432      


Q ss_pred             hcCCCCCCCeEEecCCCcch-HHHH-HHhhC-CeeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCcccc
Q 018437          147 EQGKPYDKPNIVTGANVQVC-WEKF-ARYFE-VELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGE  217 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s-~~~~-~~~~G-~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~  217 (356)
                             +++|+++.+.|.. +... +...| +.++.+++++ ++.+|+++|++++++      ++++|++++|+  +|+
T Consensus        73 -------gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~  142 (333)
T PRK10534         73 -------GEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAA-DGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGK  142 (333)
T ss_pred             -------CCeeEEechhhhhHhcCCchHHhcCceEEeecCCC-CCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCe
Confidence                   4688888888854 4321 34444 6777787775 489999999999976      57888888655  599


Q ss_pred             cCCHHH---HHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCC
Q 018437          218 FEDVKL---LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (356)
Q Consensus       218 ~~~i~~---I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~  294 (356)
                      +.|.++   |.++|+++      ++++++|+||..+........ ...+ ....|.++++++|.++.+  .|..++.+++
T Consensus       143 v~~~~~l~~i~~~~~~~------~~~lvvDEA~~~~~~~~~~~~-~~~~-~~~~~~~~~s~SK~~~~~--~G~~~~~~~~  212 (333)
T PRK10534        143 VLPREYLKQAWEFTRER------NLALHVDGARIFNAVVAYGCE-LKEI-TQYCDSFTICLSKGLGTP--VGSLLVGNRD  212 (333)
T ss_pred             ecCHHHHHHHHHHHHHc------CCeEEeeHHHHHHHHHHcCCC-HHHH-HhcCCEEEEEeEcCCCCc--ccceEEcCHH
Confidence            876655   56788888      999999999763211000111 1111 123466677899976655  5643344443


Q ss_pred             C
Q 018437          295 D  295 (356)
Q Consensus       295 ~  295 (356)
                      .
T Consensus       213 ~  213 (333)
T PRK10534        213 Y  213 (333)
T ss_pred             H
Confidence            3

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.63  E-value=3.2e-15  Score=143.09  Aligned_cols=156  Identities=15%  Similarity=0.019  Sum_probs=115.9

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++.+ +       ..+++++|++|+..++.++.++             +++|+++.+.|+.+..
T Consensus        50 ~p~~~~Le~~----lA~l~~-~-------~~v~~~sG~~Ai~~~l~all~~-------------Gd~Vl~~~~~y~~~~~  104 (366)
T PRK07582         50 NPTWRALEAA----LGELEG-A-------EALVFPSGMAAITAVLRALLRP-------------GDTVVVPADGYYQVRA  104 (366)
T ss_pred             CccHHHHHHH----HHHHcC-C-------CEEEECCHHHHHHHHHHHhcCC-------------CCEEEEeCCCcHhHHH
Confidence            4466666655    666662 2       2577788889998888776432             5799999999877765


Q ss_pred             HH----HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 FA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .+    ...|++++.++.+++ +.        .+.+++++|+++.|+||+|.+.|+++|.++|+++      |++++||+
T Consensus       105 ~~~~~l~~~G~~v~~v~~~~~-~~--------~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~------g~~lvVD~  169 (366)
T PRK07582        105 LAREYLAPLGVTVREAPTAGM-AE--------AALAGADLVLAETPSNPGLDVCDLAALAAAAHAA------GALLVVDN  169 (366)
T ss_pred             HHHHHHhcCeEEEEEECCCCh-HH--------HhccCceEEEEECCCCCCCCccCHHHHHHHHHHc------CCEEEEEC
Confidence            44    346899999987642 21        2336789999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTK  293 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~  293 (356)
                      +|..+..     ..+.+   .++|.++.|+|||+.+|.|  .|+++.+++
T Consensus       170 t~~~~~~-----~~p~~---~g~Divv~S~sK~l~G~~g~~~G~v~~~~~  211 (366)
T PRK07582        170 TTATPLG-----QRPLE---LGADLVVASDTKALTGHSDLLLGYVAGRDP  211 (366)
T ss_pred             CCCCccc-----cCchh---cCCcEEEecccccccCCCCeeEEEEEcCcH
Confidence            9853211     11222   3689999999999988887  588876544

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.63  E-value=5.2e-15  Score=142.00  Aligned_cols=154  Identities=15%  Similarity=0.044  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHH
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FAR  172 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~----~~~  172 (356)
                      .+.+.+.++.+.|.+.       .+++++|++|+..++.++.++             +++||++.+.|.++..    .++
T Consensus        66 ~~~Le~~la~le~~~~-------~v~~sSG~aAi~~~l~all~~-------------GD~Vlv~~~~Y~~~~~l~~~~l~  125 (395)
T PRK05967         66 TDALCKAIDALEGSAG-------TILVPSGLAAVTVPFLGFLSP-------------GDHALIVDSVYYPTRHFCDTMLK  125 (395)
T ss_pred             HHHHHHHHHHHhCCCC-------EEEECcHHHHHHHHHHHhcCC-------------CCEEEEccCCcHHHHHHHHHHHH
Confidence            3345555788776543       567777899999998887543             6799999999988764    456


Q ss_pred             hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc
Q 018437          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~  252 (356)
                      .+|+++++++.+      +.+.++++++++|++|++++|+||++.+.|+++|+++|+++      |++++||++|+.++.
T Consensus       126 ~~Gi~v~~vd~~------~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~------g~~vvVD~t~a~p~~  193 (395)
T PRK05967        126 RLGVEVEYYDPE------IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRH------GAIVMMDNTWATPLY  193 (395)
T ss_pred             hcCeEEEEeCCC------CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHh------CCEEEEECCccCcee
Confidence            779998888643      34789999999999999999999999999999999999999      999999999986433


Q ss_pred             cccCCCCcccccCCCceEEEEcCCcCCCCCc--CeeEEEE
Q 018437          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVW  290 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l~~  290 (356)
                        ..+   .   ..|+|.+..|..|++.+..  -.|+++.
T Consensus       194 --~~p---l---~~GaDivv~S~tKy~~Gh~d~~~G~v~~  225 (395)
T PRK05967        194 --FRP---L---DFGVDISIHAATKYPSGHSDILLGTVSA  225 (395)
T ss_pred             --cCh---h---HcCCCEEEEecccccCCCCCeeEEEEEc
Confidence              221   2   2489999999999964322  1565543

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.63  E-value=7.6e-15  Score=142.29  Aligned_cols=151  Identities=19%  Similarity=0.098  Sum_probs=123.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++.|...       .+.+++|+.|+.+++.++..+             +++||++.+.|.+...
T Consensus        60 nPtv~~lE~~----la~leg~~~-------av~~~SG~aAi~~al~all~~-------------GD~VI~~~~~Y~~T~~  115 (432)
T PRK06702         60 NPTLAAFEQK----LAELEGGVG-------AVATASGQAAIMLAVLNICSS-------------GDHLLCSSTVYGGTFN  115 (432)
T ss_pred             CcHHHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHhcCC-------------CCEEEECCCchHHHHH
Confidence            4566667666    888888864       688999999999999877432             5799999998875444


Q ss_pred             H----HHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 F----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .    +..+|+++++++     ..+|+++++++|+++|++|++.+++||++.+.|+++|+++|+++      |+++++|+
T Consensus       116 ~~~~~l~~~Gi~v~~vd-----~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~------gi~livD~  184 (432)
T PRK06702        116 LFGVSLRKLGIDVTFFN-----PNLTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKEL------EVPFIVDN  184 (432)
T ss_pred             HHHHHHHHCCCEEEEEC-----CCCCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHc------CCEEEEEC
Confidence            4    677899988884     35789999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA  283 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~  283 (356)
                      +++....  ..+   .   ..|+|.++.|..||+.+..
T Consensus       185 T~~tP~~--~~p---l---~~GADIvv~S~TKy~~Ghs  214 (432)
T PRK06702        185 TLATPYL--CQA---F---EHGANIIVHSTTKYIDGHA  214 (432)
T ss_pred             CCCchhh--CCh---h---hcCCCEEEEccccccCCCc
Confidence            9864322  111   1   3589999999999987764

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.62  E-value=3.3e-14  Score=137.96  Aligned_cols=192  Identities=12%  Similarity=-0.032  Sum_probs=130.6

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      ..+|.+.+++.+.++........+.   +......++.+.+++++|.+.       .+++++|++||..++.++...   
T Consensus        59 ~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~-------~l~~~sG~~an~~ai~~l~~~---  128 (402)
T TIGR01821        59 GQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKES-------ALVFTSGYVANDATLATLAKI---  128 (402)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCe-------EEEECchHHHHHHHHHHhhCC---
Confidence            4467888888888765332221111   223444567777999998653       566777799999988876531   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh----hCceEEEEecCCCcccccC
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFE  219 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~~~  219 (356)
                              ..+..|+.....|.+....+...|+++..++.      .|+++|++.++    +++++|++++++|++|.+.
T Consensus       129 --------~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~  194 (402)
T TIGR01821       129 --------IPGCVIFSDELNHASMIEGIRHSGAEKFIFRH------NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIA  194 (402)
T ss_pred             --------CCCCEEEEcchHhHHHHHHHHHcCCeEEEECC------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc
Confidence                    01346666667899988888888887655432      26677777775    2578999999999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCCcEEEecccccccc-cccCCCC-cccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDL-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       220 ~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      |+++|.++|+++      ++++++|+||+.++. +....-. ...+ ...+|.+..+..|.++.+ | |+++.+
T Consensus       195 ~l~~i~~l~~~~------~~~livDea~~~G~~g~~g~g~~~~~~~-~~~~div~~t~sKa~g~~-G-G~i~~~  259 (402)
T TIGR01821       195 PIEEICDLADKY------GALTYLDEVHAVGLYGPRGGGIAERDGL-MHRIDIIEGTLAKAFGVV-G-GYIAAS  259 (402)
T ss_pred             CHHHHHHHHHHc------CCEEEEeCcccccccCCCCCccchhccC-CCCCeEEEEechhhhccC-C-ceeecC
Confidence            999999999999      999999999984432 1111100 0111 134688877899988543 3 565543

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.62  E-value=2.7e-14  Score=136.36  Aligned_cols=202  Identities=14%  Similarity=0.075  Sum_probs=140.8

Q ss_pred             cccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|+.+.+. .+++.+.+++.+.+.. ...|. .++...    +++.+++.+++++     ..+++|+|+++++.+++.+
T Consensus        33 i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~-~~~~~~----lr~~ia~~~~~~~-----~~I~it~G~~~al~~~~~~  101 (357)
T PRK14809         33 VKLSSNENPHGPSPAAVEAIREAAER-VHSYP-KASHAD----LTAALADRWDVSP-----EQVWLANGGDGALDYLARA  101 (357)
T ss_pred             eEecCCCCCCCCCHHHHHHHHHHHhh-hhcCC-CCCHHH----HHHHHHHHhCCCc-----ceEEECCCHHHHHHHHHHH
Confidence            344444333 3456777777766542 22232 234444    4455677778876     3489999999999988887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      +.++             ++.|++++|+|..+...++..|++++.+|++. +++.+|++++++.. +++++|++++|+|||
T Consensus       102 ~~~~-------------gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPT  167 (357)
T PRK14809        102 MLDP-------------GDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPT  167 (357)
T ss_pred             hcCC-------------CCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCC
Confidence            7543             57899999999888888888999999999864 34788998888776 357899999999999


Q ss_pred             cccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCC-CCcCeeEEEEeC
Q 018437          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       216 G~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~  292 (356)
                      |.+-+.+++.++++...+    ++++++|++|+.+...   +.....+. ..++ .+..++.|.++ ....+|+++..+
T Consensus       168 G~~~s~~~~~~l~~~~~~----~~~iI~De~y~~~~~~---~~~~~~~~~~~~v-i~~~SfSK~~~~~GlRiG~~~~~~  238 (357)
T PRK14809        168 GSEIPLDEVEALAERTDE----ETLVVVDEAYGEFAER---PSAVALVEERDDV-AVLRTFSKAYGLAGLRLGYAVVPE  238 (357)
T ss_pred             CcCCCHHHHHHHHHhCcc----CcEEEEechhhhccCC---chhHHHHhhCCCE-EEEecchhHhcCcchhheeeecCH
Confidence            999999888888886522    6799999999875421   11000111 1121 33446889875 567899998743

>PRK07908 hypothetical protein; Provisional

Probab=99.62  E-value=3.3e-14  Score=135.33  Aligned_cols=181  Identities=13%  Similarity=0.017  Sum_probs=129.7

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.+.. ...|....+...    +++.+++.+|+++     ..+++|+|+++++..++. + .        
T Consensus        36 ~~~~~~~~~~~~~~~-~~~Y~~~~g~~~----lr~aia~~~~~~~-----~~I~it~Ga~~al~~~~~-l-~--------   95 (349)
T PRK07908         36 PPEWLRERLAARLGD-LAAYPSTEDERR----ARAAVAARHGRTP-----DEVLLLAGAAEGFALLAR-L-R--------   95 (349)
T ss_pred             CCHHHHHHHHHHhhH-hhcCCCccchHH----HHHHHHHHhCcCh-----hhEEECCCHHHHHHHHHh-c-C--------
Confidence            456788888776643 222333334444    4455777788876     348999999999987766 2 1        


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i  227 (356)
                            .+.+++..|++..+...++..|++++.+|++++ +.+|++.+    .++++++++++|+||||.+.+.++|.++
T Consensus        96 ------~~~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~-~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~~l~~l  164 (349)
T PRK07908         96 ------PRRAAVVHPSFTEPEAALRAAGIPVHRVVLDPP-FRLDPAAV----PDDADLVVIGNPTNPTSVLHPAEQLLAL  164 (349)
T ss_pred             ------CCeEEEeCCCChHHHHHHHHcCCEEEeeccCcc-cCcChhHh----ccCCCEEEEcCCCCCCCCCcCHHHHHHH
Confidence                  135667789998888999999999999999875 88999865    4567899999999999999999999999


Q ss_pred             HHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEE-cCCcCCC-CCcCeeEEEEe
Q 018437          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINV-SGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~-~~hK~l~-~P~g~g~l~~~  291 (356)
                      |+ +      +.++++|++|+.++.    .. ...+. ...-+.+.+ |++|.++ ....+|+++..
T Consensus       165 ~~-~------~~~iIvDe~y~~~~~----~~-~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~  219 (349)
T PRK07908        165 RR-P------GRILVVDEAFADAVP----GE-PESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGA  219 (349)
T ss_pred             Hh-c------CCEEEEECcchhhcc----CC-ccccccccCCCEEEEeecccccCCccceeeeeecC
Confidence            96 4      678999999986432    11 11111 111245555 7899764 55678999864

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.62  E-value=4.6e-14  Score=134.82  Aligned_cols=199  Identities=20%  Similarity=0.167  Sum_probs=138.9

Q ss_pred             HHHHHHHHH-Hhc-ccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           70 PECDKLVMA-SIN-KNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        70 ~~v~~~i~~-~~~-~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +.+.+++.+ ... .....|....+...+++++.+++.+-.|++.+.  ...+++++|+.+++..++..++.        
T Consensus        21 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~--~~~i~~~~G~~~~~~~~~~~~~~--------   90 (363)
T PF00155_consen   21 PAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDP--EANILVTSGAQAALFLLLRLLKI--------   90 (363)
T ss_dssp             HHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTG--GEGEEEESHHHHHHHHHHHHHHS--------
T ss_pred             HHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCccccc--ceEEEEecccccchhhhhhcccc--------
Confidence            445555443 222 233456666688889988888888666666522  11466676666666555554421        


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec-CCccccCHHHHHHHHhh------CceEEEEecCCCcccccCC
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED  220 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~  220 (356)
                          ..++.|+++.|.|..+...++..|++++.+|++ ++++.+|+++|++.+++      ++++|+++.|+||||.+-+
T Consensus        91 ----~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~  166 (363)
T PF00155_consen   91 ----NPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLS  166 (363)
T ss_dssp             ----STTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--
T ss_pred             ----cccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccc
Confidence                015789999999999999999999999999985 34589999999999987      5789999999999999855


Q ss_pred             H---HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC---cccccCCCc-eEEEEcCCcCCCCC-cCeeEEEEe
Q 018437          221 V---KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL---EWDFRLPLV-KSINVSGHKYGLVY-AGVGWVVWR  291 (356)
Q Consensus       221 i---~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~---~~~~~~~~~-Ds~~~~~hK~l~~P-~g~g~l~~~  291 (356)
                      .   ++|+++|+++      ++++++|.+|+.+...  ....   ...+ .... ..+..|..|.++.| ..+|++++.
T Consensus       167 ~~~l~~l~~~~~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~-~~~~~vi~~~S~SK~~g~~GlRvG~i~~~  236 (363)
T PF00155_consen  167 LEELRELAELAREY------NIIIIVDEAYSDLIFG--DPDFGPIRSLL-DEDDNVIVVGSLSKSFGLPGLRVGYIVAP  236 (363)
T ss_dssp             HHHHHHHHHHHHHT------TSEEEEEETTTTGBSS--SSHTHHHHGHH-TTTSTEEEEEESTTTTTSGGGTEEEEEEE
T ss_pred             cccccchhhhhccc------ccceeeeeceeccccC--CCccCcccccc-cccccceeeeeccccccccccccccccch
Confidence            5   5555669999      9999999999986552  1100   1111 1222 46667799976544 578999884

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.62  E-value=1.7e-14  Score=141.47  Aligned_cols=182  Identities=13%  Similarity=0.064  Sum_probs=135.4

Q ss_pred             cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH
Q 018437           89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE  168 (356)
Q Consensus        89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~  168 (356)
                      ...|...+++++.+++.+.+|.... .+...+++|+|+++++.+.++++.++             ++.|+++.|.|..+.
T Consensus        93 ~~~G~~~LR~aiA~~l~~~~~~~~~-v~p~~Ivit~G~t~al~~l~~~l~~p-------------GD~Vlv~~P~Y~~f~  158 (447)
T PLN02607         93 DYHGLKSFRQAMASFMEQIRGGKAR-FDPDRIVLTAGATAANELLTFILADP-------------GDALLVPTPYYPGFD  158 (447)
T ss_pred             CCcchHHHHHHHHHHHHHhcCCCCC-cCHHHeEEcCChHHHHHHHHHHhCCC-------------CCEEEEcCCCCcchH
Confidence            3457889999999999988773210 01235889999999998888877653             578999999999998


Q ss_pred             HHHH-hhCCeeEEEEecC-CccccCHHHHHHHHhh------CceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCC
Q 018437          169 KFAR-YFEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGW  237 (356)
Q Consensus       169 ~~~~-~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~  237 (356)
                      ..+. ..|++++.|++++ +++.+|++++++++.+      ++++|++++|+||||.+-+   +++|.++|+++      
T Consensus       159 ~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~------  232 (447)
T PLN02607        159 RDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRK------  232 (447)
T ss_pred             HHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHC------
Confidence            8776 4789999999874 3478999999999874      6789999999999999855   77888999999      


Q ss_pred             CCcEEEecccccccccccCCCC-c-ccc----c----CCCceEEEEcCCcCCC-CCcCeeEEEEeCC
Q 018437          238 DTPIHVDAASGGFIAPFLYPDL-E-WDF----R----LPLVKSINVSGHKYGL-VYAGVGWVVWRTK  293 (356)
Q Consensus       238 ~~~l~vD~a~~~~~~~~~~~~~-~-~~~----~----~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~~  293 (356)
                      ++++++|++|...+..  .+.. . ..+    .    ..++ .+..+..|-++ ....+|+++..++
T Consensus       233 ~i~lI~DEiYa~~~f~--~~~f~S~~s~~~~~~~~~~~~~v-~vi~s~SK~fg~~GlRvG~ivs~n~  296 (447)
T PLN02607        233 NIHLVSDEIYSGSVFS--ASEFVSVAEIVEARGYKGVAERV-HIVYSLSKDLGLPGFRVGTIYSYND  296 (447)
T ss_pred             CCEEEEeccccccccC--CCCcccHHHHHhhcCCCCCcCcE-EEEEcchhcCCCCcceEEEEEEcCH
Confidence            9999999999875431  1100 0 000    0    0122 34567889765 6678999987543

>PLN02672 methionine S-methyltransferase

Probab=99.61  E-value=1.4e-14  Score=151.88  Aligned_cols=213  Identities=9%  Similarity=0.086  Sum_probs=153.4

Q ss_pred             CCCCcccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHH
Q 018437           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (356)
Q Consensus        54 ~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (356)
                      +++.++|..+.+.. +++.+.+++.+.+.....    +.+...+.+++++++++.+|++.+.  ..++++|+|+++++..
T Consensus       696 g~~vI~LsinE~d~ppPp~V~eAi~eal~~~~~----s~g~pdlr~aLa~~la~~~Gv~~d~--~e~IIvt~Gs~elL~l  769 (1082)
T PLN02672        696 ESSLIHMDVDESFLPVPSAVKASIFESFVRQNI----SESETDPRPSILQFIKSNYGFPTDS--CTEFVYGDTSLALFNK  769 (1082)
T ss_pred             CCCEEEEeCCCCCCCCCHHHHHHHHHHHhhcCC----CCCChHHHHHHHHHHHHHhCcCCCC--CCEEEEeCCHHHHHHH
Confidence            44555666655554 456888888776643211    2233456789999999999998631  1247888888888888


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhh-CceEEEEec
Q 018437          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE-NTICVAAIL  210 (356)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~-~~~~v~~~~  210 (356)
                      ++.++.++             ++.|+++.|+|+.|...++..|++++.||+++ +++.+|++.|++++++ ++++|++++
T Consensus       770 ll~aLl~p-------------GD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~n  836 (1082)
T PLN02672        770 LVLCCVQE-------------GGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISG  836 (1082)
T ss_pred             HHHHHcCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEEC
Confidence            88877653             57999999999999999999999999999974 4589999999999976 346889999


Q ss_pred             CC-Cccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-ccccc-----CCC----ceEEEE-cC
Q 018437          211 GS-TLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFR-----LPL----VKSINV-SG  275 (356)
Q Consensus       211 ~~-~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~-----~~~----~Ds~~~-~~  275 (356)
                      || ||||.+   +.+++|.++|++|      ++++++|++|+.+...  .... ..++.     ...    ...+.+ +.
T Consensus       837 PnhNPTG~v~S~eeLe~Llela~k~------di~VIsDEaYsdL~Fd--~~~~s~~sl~s~l~~~~~~sks~nVIvL~Sf  908 (1082)
T PLN02672        837 PTINPTGLLYSNSEIEEILSVCAKY------GARVIIDTSFSGLEYD--TSGWGGWDLKSILSRLKSSNPSFAVALLGGL  908 (1082)
T ss_pred             cCCCCcCccCCHHHHHHHHHHHHHc------CCEEEEeCCCCccccC--CCCCcccchhhHHHHhccccCCceEEEEeCc
Confidence            98 999998   4577888899999      9999999999865441  1100 01110     000    012333 55


Q ss_pred             C-cCCCCCcCeeEEEEeCC
Q 018437          276 H-KYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       276 h-K~l~~P~g~g~l~~~~~  293 (356)
                      . |++.+...+|+++..++
T Consensus       909 SKkf~lpGLRIGylIap~~  927 (1082)
T PLN02672        909 STELLSGGHEFGFLALNDS  927 (1082)
T ss_pred             HHhhccHHHHheeEEeCCH
Confidence            6 57777789999987543

>PRK08354 putative aminotransferase; Provisional

Probab=99.60  E-value=3.9e-14  Score=132.71  Aligned_cols=171  Identities=20%  Similarity=0.182  Sum_probs=122.8

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      ++.+.+++.+++.... .   +|...    .+++++++.+|.+        +++|+|+++++...+..+. +        
T Consensus        22 p~~~~~a~~~~~~~~~-~---yp~~~----~l~~~ia~~~~~~--------I~vt~G~~~al~~~~~~~~-~--------   76 (311)
T PRK08354         22 PEWLDEMFERAKEISG-R---YTYYE----WLEEEFSKLFGEP--------IVITAGITEALYLIGILAL-R--------   76 (311)
T ss_pred             CHHHHHHHHHHHHHhh-c---CCChH----HHHHHHHHHHCCC--------EEECCCHHHHHHHHHHhhC-C--------
Confidence            4677788776654321 2   22223    3556788888742        7899999999877664332 1        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHHH
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLH  225 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I~  225 (356)
                           +++|+++.|+|+.+...++..|++++.+       .+|++.|+++++ +++++++++|+||||.+.+   +++|.
T Consensus        77 -----gd~vlv~~P~y~~~~~~~~~~g~~~~~~-------~~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~  143 (311)
T PRK08354         77 -----DRKVIIPRHTYGEYERVARFFAARIIKG-------PNDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLL  143 (311)
T ss_pred             -----CCeEEEeCCCcHHHHHHHHHcCCEEeec-------CCCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHH
Confidence                 5789999999999999999999998654       357888988876 4678999999999999865   56677


Q ss_pred             HHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       226 ~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      ++|+++      ++|+++|++|+.+...   +. ...  .++ -.+.-|+.|.++ ....+|+++.
T Consensus       144 ~~a~~~------~~~li~De~y~~f~~~---~~-~~~--~~~-vi~~~S~SK~~~l~GlRiG~~v~  196 (311)
T PRK08354        144 DAVEDR------NALLILDEAFIDFVKK---PE-SPE--GEN-IIKLRTFTKSYGLPGIRVGYVKG  196 (311)
T ss_pred             HHhhhc------CcEEEEeCcchhcccc---cc-ccC--CCc-EEEEeccHhhcCCccceeeeeee
Confidence            778888      9999999999876542   11 111  111 234456789876 5578898876

>PLN02397 aspartate transaminase

Probab=99.60  E-value=2.7e-14  Score=139.33  Aligned_cols=184  Identities=13%  Similarity=-0.000  Sum_probs=124.1

Q ss_pred             CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHH--HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC
Q 018437           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA--IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV  163 (356)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a--~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~  163 (356)
                      .|....|..++++++.+++.+..+.+.++ .......+.+|+.+  +..++.+...+             +++|++++|+
T Consensus        86 ~Y~~~~G~~~LR~aia~~~~~~~~~~~~~-~~i~~~~i~~g~Ga~~l~~~~~~~~~p-------------Gd~Vlv~~P~  151 (423)
T PLN02397         86 EYLPIEGLAEFNKLSAKLAYGADSPAIKE-NRVATVQCLSGTGSLRLGAEFLARFYP-------------GSTIYIPNPT  151 (423)
T ss_pred             CCCCcCCCHHHHHHHHHHHcCCCCchhhc-CeeEeeecccchHHHHHHHHHHHHhCC-------------CCEEEEeCCC
Confidence            57777799999999888875543222111 01111213344333  33444433221             5799999999


Q ss_pred             cchHHHHHHhhCCeeEEEEe-cCCccccCHHHHHHHHh---hCceEEEEecCCCcccccC---CHHHHHHHHHHhhhccC
Q 018437          164 QVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETG  236 (356)
Q Consensus       164 h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~  236 (356)
                      |+.+...++..|++++.+|+ +++++.+|++.+++.+.   ++++++++++|+||||.+-   .+++|.++|+++     
T Consensus       152 y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~-----  226 (423)
T PLN02397        152 WGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSK-----  226 (423)
T ss_pred             chhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-----
Confidence            99999999999999999998 43348999999988875   4678888999999999984   567788999999     


Q ss_pred             CCCcEEEeccccccccccc-CCCCc-ccccCCCceEE-EEcCCcCCC-CCcCeeEEE
Q 018437          237 WDTPIHVDAASGGFIAPFL-YPDLE-WDFRLPLVKSI-NVSGHKYGL-VYAGVGWVV  289 (356)
Q Consensus       237 ~~~~l~vD~a~~~~~~~~~-~~~~~-~~~~~~~~Ds~-~~~~hK~l~-~P~g~g~l~  289 (356)
                       ++++++|++|..+...-. .+... ..+...+-..+ .-|+.|.+. ..+.+|+++
T Consensus       227 -~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v  282 (423)
T PLN02397        227 -NHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALS  282 (423)
T ss_pred             -CcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEE
Confidence             999999999988653100 00001 11111121244 446899876 578899986

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.60  E-value=1.2e-13  Score=142.26  Aligned_cols=296  Identities=12%  Similarity=-0.027  Sum_probs=189.3

Q ss_pred             ccccccc-cchhhhhcCC-CCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccccccC-CCChHHHHHHHH---HHhcc-cC
Q 018437           12 EILSSTF-ASRYVRAAIP-RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVT-TWMEPECDKLVM---ASINK-NY   84 (356)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~-~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~v~~~i~---~~~~~-~~   84 (356)
                      ++|+++| ...|..-.+. .+.+|+ ++++.+++++++++..++...+..++.+.. +..|+.+.+-+.   .++.. .+
T Consensus        35 ~s~d~l~~~~iP~~ir~~~~l~lp~-~~sE~e~~~~~~~~a~kN~~~~~fiG~G~y~~~~P~vi~~~i~~~~~~yTaYTP  113 (954)
T PRK12566         35 ASRAELIEQTVPPAIRLNRPLDLPA-ALDEQAALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLENPGWYTAYTP  113 (954)
T ss_pred             cCHHHHhhccCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCccccccccccCCcCcHHHHHHHHhCchhhhcCCC
Confidence            5688888 7777766554 356766 689999999999987766543322333333 334455534443   23433 46


Q ss_pred             CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 018437           85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (356)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h  164 (356)
                      ++++.+++..+...+.+.++++|+|++..+     ..+--|+|.+-- |+..+++..+         .++.+|++++..|
T Consensus       114 YQpEisQG~Lqal~e~Qtmi~~LtGm~vaN-----ASl~D~atA~aE-A~~ma~~~~~---------~k~~~~~v~~~~h  178 (954)
T PRK12566        114 YQPEIAQGRLEALLNFQQMTIDLTGLDLAN-----ASLLDEATAAAE-AMALAKRVAK---------SKSNRFFVDEHCH  178 (954)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHhCchhhh-----hhhccchhHHHH-HHHHHHHHhh---------cCCCEEEECCCCC
Confidence            677778999999999999999999999622     233345553322 2222222111         0135799999999


Q ss_pred             chHHHHHH----hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCc
Q 018437          165 VCWEKFAR----YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (356)
Q Consensus       165 ~s~~~~~~----~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~  240 (356)
                      +.+...++    .+|++++.            +++++.+++++.+|++.+||+. |.+.|+++|.+++|+.      |.+
T Consensus       179 P~~~~v~~t~~~~~g~~i~~------------~~~~~~~~~~~~~v~vq~P~~~-G~i~d~~~i~~~~h~~------gal  239 (954)
T PRK12566        179 PQTLSVLRTRAEGFGFELVV------------DAVDNLAAHAVFGALLQYPDTH-GEIRDLRPLIDQLHGQ------QAL  239 (954)
T ss_pred             HHHHHHHHHhhhcCCcEEEE------------cchhhcCCCCEEEEEEECCCCc-eEEccHHHHHHHHHHc------CCE
Confidence            98766554    45666653            2244455667889999999876 9999999999999999      887


Q ss_pred             EEEecccccccccccCCCCcccccCCCceEEEEcCCcC----CCCCcCeeEEEEeCCCCCccccccccCCCCC-------
Q 018437          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY----GLVYAGVGWVVWRTKDDLPDELVFHINYLGS-------  309 (356)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~----l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~-------  309 (356)
                      +++ ++--.. +..+.  .+-   ..|+|.++-+++-+    +++.+..|++.++++  +.+.++   ..+-|       
T Consensus       240 ~~~-~~d~la-L~ll~--~Pg---e~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~--~~R~~P---GRivG~s~D~~G  307 (954)
T PRK12566        240 ACV-AADLLS-LLVLT--PPG---ELGADVVLGSTQRFGVPMGYGGPHAAYFACRDD--YKRAMP---GRIIGVSRDARG  307 (954)
T ss_pred             EEE-EeCHHH-HhCCC--Chh---hcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHH--HHhhCC---CCccceeecCCC
Confidence            554 432110 10011  122   34899985544433    334456899988764  222221   11111       


Q ss_pred             C-----------------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          310 D-----------------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       310 ~-----------------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      .                 .-+ +--||-++..++..-.++.++|.+|++++.+++..+|+||+
T Consensus       308 ~~a~~l~LqtREQHIRReKAt-SNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~  369 (954)
T PRK12566        308 NTALRMALQTREQHIRREKAN-SNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILA  369 (954)
T ss_pred             CeeeehhhhHHHHHhhhcccc-chhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            0                 001 12388888777788888899999999999999999999875

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.59  E-value=9.8e-15  Score=139.09  Aligned_cols=244  Identities=9%  Similarity=-0.010  Sum_probs=163.7

Q ss_pred             hHH-HHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           69 EPE-CDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        69 ~~~-v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .|. ..+++.+.+-   .....++.+.++.+++.+.+.++++.+.+   ....+++.+||.++-.++..+...       
T Consensus        15 ~~~~~~~~~~~~~~---~~~HRs~~F~~i~~e~~~~L~~l~~~~~~---~~v~~l~GsGT~a~Eaa~~nl~~~-------   81 (374)
T TIGR01365        15 RPGWSIEELKNAPL---GRSHRSKLGKEKLAEAIKKTREMLGVPAD---YLIGIVPASDTGAVEMALWSMLGC-------   81 (374)
T ss_pred             CchhhHHHHhhhhc---ccCcCCHHHHHHHHHHHHHHHHHhCCCCC---cEEEEECCchHHHHHHHHHHcCCC-------
Confidence            344 4555544332   22344778889999999999999998532   123567889999998888876521       


Q ss_pred             cCCCCCCCeEEecCCCcch--HH-HHHHhhCCe-eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHH
Q 018437          148 QGKPYDKPNIVTGANVQVC--WE-KFARYFEVE-LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKL  223 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s--~~-~~~~~~G~~-v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~  223 (356)
                           ++.+|++..  .++  +. +.++..|++ +..+..+.. -.+|+++++.  +   +.|.++|..|.||+..|+++
T Consensus        82 -----~g~~vLv~g--~FG~r~~~eia~~~g~~~v~~l~~~~g-~~~~~~~ve~--~---~~v~~vhnETSTGv~npv~~  148 (374)
T TIGR01365        82 -----RGVDVLAWE--SFGKGWVTDVTKQLKLPDVRVLEAEYG-KLPDLKKVDF--K---NDVVFTWNGTTSGVRVPNGD  148 (374)
T ss_pred             -----CCCeEEEEC--HHHHHHHHHHHHhcCCCCcEEEcCCCC-CCCCHHHcCC--C---CCEEEecCCCchheeccccc
Confidence                 134666654  333  44 788889994 888887654 5889999873  1   23679999999999999976


Q ss_pred             HHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccc-cc
Q 018437          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL-VF  302 (356)
Q Consensus       224 I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~-~~  302 (356)
                      |...+  +      +.+++||+..+.+..|       +++.  ++|.+..+++|++++|+|.|+++++++.+..... ..
T Consensus       149 i~~~~--~------~~lliVDavSs~g~~~-------l~~d--~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~  211 (374)
T TIGR01365       149 FIPAD--R------EGLTICDATSAAFAQD-------LDYH--KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTP  211 (374)
T ss_pred             ccccc--C------CCcEEEEccchhcCCC-------CChh--HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCC
Confidence            66322  5      7899999998766553       3333  5999999999999999999999998764321010 00


Q ss_pred             --c-cCCCCCCC--------CCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          303 --H-INYLGSDQ--------PTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       303 --~-~~~~~~~~--------~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                        + +.|+....        .......|++.....++..+++.+-.+ |++++++++.+++++++
T Consensus       212 y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~  276 (374)
T TIGR01365       212 AWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLE  276 (374)
T ss_pred             CCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence              0 01111000        011223455555555555666656565 89999999999988764

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK08637 hypothetical protein; Provisional

Probab=99.59  E-value=4.3e-14  Score=136.53  Aligned_cols=198  Identities=10%  Similarity=0.022  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +.+.+++.+........|....+...+++.+.+++.+..+ .+++  +...+++|+|+++++.+++.++.++        
T Consensus        23 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~--~~~~I~it~G~~~al~~~~~~l~~~--------   92 (388)
T PRK08637         23 SSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGK--KMSLPIVTNALTHGLSLVADLFVDQ--------   92 (388)
T ss_pred             HHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCcccccc--ccceeeEccchHHHHHHHHHHhcCC--------
Confidence            3444444432222334555666888888887777766542 2221  1124789999999999888877543        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHH-hhCCeeEEEEecCCccccCHHHHHHHHh----hCceEEEEecCCCcccccC---C
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFAR-YFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFE---D  220 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~-~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~~~---~  220 (356)
                           +++|+++.|+|+.+...+. ..|++++.+|++.+++.+|+++|+++++    +.+.++++++|+||||.+-   .
T Consensus        93 -----gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~  167 (388)
T PRK08637         93 -----GDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKE  167 (388)
T ss_pred             -----CCEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHH
Confidence                 5789999999999988754 6799999999842236789999999887    4456677888999999984   4


Q ss_pred             HHHHHHHHHH-----hhhccCCCCcEEEecccccccccccCCCCccc----c-c-CCCceEEEE-cCCc-CCCCCcCeeE
Q 018437          221 VKLLHDLLTK-----KNEETGWDTPIHVDAASGGFIAPFLYPDLEWD----F-R-LPLVKSINV-SGHK-YGLVYAGVGW  287 (356)
Q Consensus       221 i~~I~~i~~~-----~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~----~-~-~~~~Ds~~~-~~hK-~l~~P~g~g~  287 (356)
                      +++|+++|++     +      ++++++|.+|..+...   +.....    + . ..++..+.+ ++.| ++.....+|+
T Consensus       168 ~~~l~~~~~~~~~~~~------~~~iI~De~Y~~l~~~---~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~  238 (388)
T PRK08637        168 ATAIVEAIKELADAGT------KVVAVVDDAYFGLFYE---DSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGF  238 (388)
T ss_pred             HHHHHHHHHHHHhcCC------cEEEEecccchhcccC---CccchhhHHHhhcccccceEEEeccccccCCCcccceEE
Confidence            5677777765     6      9999999999876531   111111    1 1 123323332 6777 5666788999


Q ss_pred             EEEe
Q 018437          288 VVWR  291 (356)
Q Consensus       288 l~~~  291 (356)
                      +++.
T Consensus       239 ~~~~  242 (388)
T PRK08637        239 ITFG  242 (388)
T ss_pred             EEEc
Confidence            9875

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.59  E-value=5.1e-14  Score=135.10  Aligned_cols=191  Identities=12%  Similarity=-0.034  Sum_probs=136.7

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      ++++.+.+++.+..... ..|.. +...    ++++.+++.+|+++     ..+++|+|+++++..++.++.++      
T Consensus        45 ~~~~~~~~a~~~~~~~~-~~Y~~-~~~~----~Lr~~ia~~~~~~~-----~~I~it~G~~~~l~~~~~~~~~~------  107 (369)
T PRK08153         45 GPSPSVIAAMREAAAEI-WKYGD-PENH----DLRHALAAHHGVAP-----ENIMVGEGIDGLLGLIVRLYVEP------  107 (369)
T ss_pred             CCCHHHHHHHHHHHHHh-hcCCC-CccH----HHHHHHHHHhCCCH-----HHEEEcCCHHHHHHHHHHHhcCC------
Confidence            34567888877665421 12221 1233    45555777778876     34899999999998888776543      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh-hCceEEEEecCCCcccccCCHHHHH
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLH  225 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~i~~I~  225 (356)
                             ++.|+++.++|+.+...++..|++++.+|++.+  .+|++++++.+. +++++|+++.|+||||.+.+.+++.
T Consensus       108 -------gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~--~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~  178 (369)
T PRK08153        108 -------GDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD--REDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIV  178 (369)
T ss_pred             -------CCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC--CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHH
Confidence                   578999999999999888999999999998653  589999987764 5788999999999999999999998


Q ss_pred             HHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       226 ~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ++++.+++    ++++++|++|+.+...   .. ...+. ...--.+..++.|.++ ....+|+++..
T Consensus       179 ~l~~~~~~----~~~lI~DE~y~~~~~~---~~-~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~  238 (369)
T PRK08153        179 AFIEALPE----TTLLVLDEAYCETAPA---GA-APPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGA  238 (369)
T ss_pred             HHHHhCCC----CcEEEEeCchhhhcCc---cc-chhhhhcCCCEEEEecchHhccCcchheeeeecC
Confidence            88886632    7899999999865421   11 11111 1111244556889875 55678998864

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.58  E-value=1e-13  Score=132.72  Aligned_cols=200  Identities=13%  Similarity=-0.022  Sum_probs=137.3

Q ss_pred             cCCCCcccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCC-CCCCCCCCeEEeCChhHHH
Q 018437           53 DGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        53 ~~~~~~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~Ggt~a~  130 (356)
                      .+++.++|..+.+..+ ++.+.+++.+....  ..|....+..++++.+.+++.+.+|.+ .+.   ..+++|+|+++++
T Consensus        25 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~--~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~---~~I~it~G~~~~i   99 (364)
T PRK07865         25 HPDGIVDLSVGTPVDPVPPVIQEALAAAADA--PGYPTTAGTPELREAIVGWLARRRGVTGLDP---AAVLPVIGSKELV   99 (364)
T ss_pred             cCCCEEEcCCCCCCCCCCHHHHHHHHHHHhh--CCCCCccCCHHHHHHHHHHHHHHcCCCCCCc---ccEEEccChHHHH
Confidence            3344455555555433 46677777654432  244455677889999999999888865 321   3589999999999


Q ss_pred             HHHHHHH-HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEe
Q 018437          131 MLAGLAF-KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       131 ~~al~~~-~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      ..++.++ ..+             ++.|+++.++|..+...++..|++++.++.        ++++.+   +++++|+++
T Consensus       100 ~~~~~~l~~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~--------~~~l~~---~~~~~v~~~  155 (364)
T PRK07865        100 AWLPTLLGLGP-------------GDVVVIPELAYPTYEVGARLAGATVVRADS--------LTELGP---QRPALIWLN  155 (364)
T ss_pred             HHHHHHHcCCC-------------CCEEEECCCCcccHHHHHHhcCCEEEecCC--------hhhCCc---ccceEEEEc
Confidence            8866655 222             578999999999999999999999887742        222322   567899999


Q ss_pred             cCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc------CCCceEEEEcCCcCC-
Q 018437          210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR------LPLVKSINVSGHKYG-  279 (356)
Q Consensus       210 ~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~------~~~~Ds~~~~~hK~l-  279 (356)
                      +|+||||.+.+   +++|.++|+++      ++++++|++|+.+...   ......+.      ...-..+..|+.|.+ 
T Consensus       156 ~p~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  226 (364)
T PRK07865        156 SPSNPTGRVLGVDHLRKVVAWARER------GAVVASDECYLELGWD---AEPVSILDPRVCGGDHTGLLAVHSLSKQSN  226 (364)
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEecchhhhccC---CCCCccccccccCCccceEEEEeechhccC
Confidence            99999998854   67888899999      9999999999865431   10000010      001135566799986 


Q ss_pred             CCCcCeeEEEE
Q 018437          280 LVYAGVGWVVW  290 (356)
Q Consensus       280 ~~P~g~g~l~~  290 (356)
                      .....+|+++.
T Consensus       227 ~~GlRiG~i~~  237 (364)
T PRK07865        227 LAGYRAGFVAG  237 (364)
T ss_pred             CCceeeEEEec
Confidence            44567888865

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.58  E-value=6.2e-14  Score=133.00  Aligned_cols=190  Identities=18%  Similarity=0.113  Sum_probs=142.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      ++++.+.+++...+.....+|+.  ...    ++++.+++.+| .++     ..++++.|++|.+...+++++.+     
T Consensus        35 gp~~~~~~~~~~~~~~~~rYPd~--~~~----~l~~a~a~~~~~~~~-----~~V~~gnGsde~i~~l~~~~~~~-----   98 (356)
T COG0079          35 GPPPKVIEAIRAALDKLNRYPDP--DYR----ELRAALAEYYGVVDP-----ENVLVGNGSDELIELLVRAFVEP-----   98 (356)
T ss_pred             CCCHHHHHHHHHHHHhhccCCCC--cHH----HHHHHHHHHhCCCCc-----ceEEEcCChHHHHHHHHHHhhcC-----
Confidence            44577788777666522222322  333    45566888888 554     34788999999999999888753     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHH
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH  225 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~  225 (356)
                              ++.|+++.|++..|...++..|++++.||.++  +.+|++.+.+++.+++++|++++||||||..-+.++|.
T Consensus        99 --------gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~--~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~  168 (356)
T COG0079          99 --------GDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE--FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELR  168 (356)
T ss_pred             --------CCEEEEcCCChHHHHHHHHhcCCeEEEecccc--cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHH
Confidence                    46999999999999999999999999999986  89999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCc-CCCCCcCeeEEEE
Q 018437          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHK-YGLVYAGVGWVVW  290 (356)
Q Consensus       226 ~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK-~l~~P~g~g~l~~  290 (356)
                      ++++..++    +.++++|+||..|.-+    .....+....==.+.=++.| ++.+.-.+|+.+.
T Consensus       169 ~l~~~~~~----~~~vVvDEAY~eF~~~----~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia  226 (356)
T COG0079         169 ALLEALPE----GGLVVIDEAYIEFSPE----SSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIA  226 (356)
T ss_pred             HHHHhCCC----CcEEEEeCchhhcCCc----hhhhhccCCCCEEEEEecHHhhhcchhceeeccC
Confidence            99998733    6799999999875431    10000000110133345778 5667788899654

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.57  E-value=1.9e-13  Score=132.80  Aligned_cols=192  Identities=11%  Similarity=-0.002  Sum_probs=127.9

Q ss_pred             CChHHHHHHHHHHhcccCCCccc---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      .++|.+.+++.+.+.........   ..+......++.+.+++++|.+.       .++.++|++||..++..+...   
T Consensus        60 ~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~-------~~~~~sG~~an~~ai~~l~~~---  129 (407)
T PRK09064         60 GQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEA-------ALVFTSGYVSNDATLSTLAKL---  129 (407)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCc-------EEEECcHHHHHHHHHHHHhCC---
Confidence            44678888888777643222111   11234445567777999998643       456666788988888776431   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh----hCceEEEEecCCCcccccC
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFE  219 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~~~  219 (356)
                              ..+..|+.....|.+....++..|+++..++.      .|+++|++.++    +++++|+++.+++++|.+.
T Consensus       130 --------~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~  195 (407)
T PRK09064        130 --------IPDCVIFSDELNHASMIEGIRRSRCEKHIFRH------NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIA  195 (407)
T ss_pred             --------CCCCEEEEeCcchHHHHHHHHHcCCcEEEECC------CCHHHHHHHHHhccCCCCeEEEEeCCCCCCcccc
Confidence                    01345555667788887888877877654442      26777887775    4678999999999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCCcEEEecccccccc-cccCCCC-cccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDL-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       220 ~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      |+++|.++|+++      ++++++|+||+.+++ +.-..-. ..++ ....|.++.+.+|.++. .| |+++.+
T Consensus       196 ~l~~i~~l~~~~------~~~livDEa~~~G~~g~~g~g~~~~~~~-~~~~div~~t~sKa~g~-~G-G~~~~~  260 (407)
T PRK09064        196 PIAEICDLADKY------NALTYLDEVHAVGMYGPRGGGIAERDGL-MDRIDIIEGTLAKAFGV-MG-GYIAGS  260 (407)
T ss_pred             CHHHHHHHHHHc------CCEEEEECCCcccccCCCCCChHHhcCC-CCCCeEEEEecchhhhc-cC-ceEecC
Confidence            999999999999      999999999974332 1100000 0111 13468887889998743 44 666553

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.57  E-value=9.7e-14  Score=127.08  Aligned_cols=223  Identities=17%  Similarity=0.145  Sum_probs=151.0

Q ss_pred             cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc----
Q 018437           89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ----  164 (356)
Q Consensus        89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h----  164 (356)
                      ..|....+|++    ++.+-|--       ..+.+++|..|+.+++..+...             +++|+.+..-|    
T Consensus        60 ~NPT~~vlE~R----iAaLEGG~-------aa~a~aSG~AA~~~ai~~la~a-------------GD~iVss~~LYGGT~  115 (426)
T COG2873          60 MNPTTDVLEER----IAALEGGV-------AALAVASGQAAITYAILNLAGA-------------GDNIVSSSKLYGGTY  115 (426)
T ss_pred             cCchHHHHHHH----HHHhhcch-------hhhhhccchHHHHHHHHHhccC-------------CCeeEeeccccCchH
Confidence            35677777776    67775553       2577888899999999988664             67888776443    


Q ss_pred             chHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEe
Q 018437          165 VCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (356)
Q Consensus       165 ~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD  244 (356)
                      .-+....+.+|+++++|+.+      |++.++++|+++|++|++-.-.||.+.+-|+++|+++||++      +++++||
T Consensus       116 ~lf~~tl~~~Gi~v~fvd~~------d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~------gvpliVD  183 (426)
T COG2873         116 NLFSHTLKRLGIEVRFVDPD------DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRH------GVPLIVD  183 (426)
T ss_pred             HHHHHHHHhcCcEEEEeCCC------CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHc------CCcEEEe
Confidence            34566678889999999754      58999999999999999999999999999999999999999      9999999


Q ss_pred             cccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-cCeeEEEEeCCCCCcc---cc----ccccCCCCCCCCC-cc
Q 018437          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWVVWRTKDDLPD---EL----VFHINYLGSDQPT-FT  315 (356)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~~~~~~~---~~----~~~~~~~~~~~~~-~~  315 (356)
                      ...+..++  ++|   ++   .|+|.++-|..||+++. ..+|-+++-...+.-.   .+    ..++.|.+-...+ +.
T Consensus       184 NT~atpyl--~rP---~~---hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g  255 (426)
T COG2873         184 NTFATPYL--CRP---IE---HGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFG  255 (426)
T ss_pred             cCCCccee--cch---hh---cCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcc
Confidence            99887544  332   22   48999999999997653 3444455433322100   00    0112232221100 00


Q ss_pred             ---------ccCCCChhH-HHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          316 ---------LNFSKGSSQ-IIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       316 ---------~~~tr~~~~-~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                               ..+-|.... ..+..+-+...|.|.+.-+++|+.++|..++
T Consensus       256 ~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA  305 (426)
T COG2873         256 NAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVA  305 (426)
T ss_pred             cHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHH
Confidence                     012222211 1222344445688888888888888876553

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.57  E-value=2.7e-14  Score=136.91  Aligned_cols=158  Identities=16%  Similarity=0.111  Sum_probs=118.0

Q ss_pred             cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC----c
Q 018437           89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV----Q  164 (356)
Q Consensus        89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~----h  164 (356)
                      ..|...++|+.    ++++.|.+.       .+.+++|+.|+.+++.++..+             +++||++...    +
T Consensus        62 ~~P~~~~lE~~----la~leg~~~-------av~~sSG~aAi~~al~all~~-------------GD~Vl~~~~~yg~t~  117 (384)
T PRK06434         62 GNPTVQAFEEK----YAVLENAEH-------ALSFSSGMGAITSAILSLIKK-------------GKRILSISDLYGQTF  117 (384)
T ss_pred             CChhHHHHHHH----HHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEecCccchHH
Confidence            34666677766    888888864       678888899999999876432             5788887653    3


Q ss_pred             chHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEE
Q 018437          165 VCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV  243 (356)
Q Consensus       165 ~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~v  243 (356)
                      ..+...+...|++++++++++ +++.+|+        +++++|++.+++||++.+.|+++|.++|+++      +  ++|
T Consensus       118 ~~~~~~~~~~Gi~v~fvd~~~~~~~~l~~--------~~tklv~~e~~snpt~~v~Di~~I~~la~~~------~--lvV  181 (384)
T PRK06434        118 YFFNKVLKTLGIHVDYIDTDRLNSLDFDP--------SNYDLIYAESITNPTLKVPDIKNVSSFCHEN------D--VIV  181 (384)
T ss_pred             HHHHHHHHhcCcEEEEECCCChhheeecC--------CCeeEEEEEcCCCCCceeecHHHHHHHHHHc------C--eEE
Confidence            334466778899999999875 2233221        3688999999999999999999999999999      8  567


Q ss_pred             ecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCCC
Q 018437          244 DAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKD  294 (356)
Q Consensus       244 D~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~~  294 (356)
                      |++++..+.  ..   +.   ..++|.++.|.||++.++.+  .|+++.++++
T Consensus       182 D~t~~s~~~--~~---pl---~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~  226 (384)
T PRK06434        182 DATFASPYN--QN---PL---DLGADVVIHSATKYISGHSDVVMGVAGTNNKS  226 (384)
T ss_pred             ECCCCCccc--CC---ch---hcCCCEEEeecccccCCCCCceEEEEecCcHH
Confidence            999865332  11   12   24899999999999988775  6777765543

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.57  E-value=1.5e-13  Score=131.50  Aligned_cols=190  Identities=14%  Similarity=0.039  Sum_probs=133.3

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      ++++.+.+++.+.+.. ...|.. +...    ++++.+++.+++++     .++++|+|+++++.+++.++..       
T Consensus        35 ~~~~~~~~a~~~~~~~-~~~Y~~-~~~~----~Lr~aia~~~~v~~-----~~I~it~G~~~~i~~~~~~l~~-------   96 (360)
T PRK07392         35 GPPESVIAAIQSALSA-LRHYPD-PDYR----ELRLALAQHHQLPP-----EWILPGNGAAELLTWAGRELAQ-------   96 (360)
T ss_pred             CCCHHHHHHHHHHHHH-hhcCCC-cCHH----HHHHHHHHHhCcCh-----hhEEECCCHHHHHHHHHHHhCC-------
Confidence            3456777777766543 222322 2333    44455677778876     3489999999999888776421       


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCcc----ccCHHHHHHHHhhCceEEEEecCCCcccccCCHH
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYY----VMNPVKAVELVDENTICVAAILGSTLTGEFEDVK  222 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~----~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~  222 (356)
                             ++.|+++.|+|..+...++..|++++.+|++.+++    ..|++.+++.. ++++++++++|+||||.+-+.+
T Consensus        97 -------g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~  168 (360)
T PRK07392         97 -------LRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSRE  168 (360)
T ss_pred             -------CCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHH
Confidence                   35899999999999999999999999999975422    35677776654 4678999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-cc-CCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR-LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       223 ~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      +|.++++++      ++ +++|++|..+..+. ....... +. .+. -.+.-|+.|.++ ....+|+++..
T Consensus       169 ~l~~l~~~~------~~-~IiDE~y~~~~~~~-~~~s~~~~~~~~~~-vi~i~S~SK~~~l~GlRiG~~v~~  231 (360)
T PRK07392        169 AILPLLEQF------AL-VVVDEAFMDFLPPD-AEQSLIPCLAEYPN-LIILRSLTKFYSLPGLRLGYAIAH  231 (360)
T ss_pred             HHHHHHHHC------CE-EEEECchhhhccCc-cccchHHHhhcCCC-EEEEEechhhhcCCchheeeeeCC
Confidence            999999998      85 67799998765321 0000000 11 111 134456899876 66889999874

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.57  E-value=1.1e-13  Score=133.27  Aligned_cols=178  Identities=14%  Similarity=0.116  Sum_probs=122.6

Q ss_pred             CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc
Q 018437           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV  165 (356)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~  165 (356)
                      .|..++...+||++    +++++|.+.       .+.|++||.|+.+++.....             .+++|  +..+|.
T Consensus        73 ~Yagd~s~~~LE~~----vAe~lG~e~-------aV~v~sGTaAl~ll~~l~v~-------------pGd~V--p~n~~f  126 (460)
T PRK13237         73 AYAGSRNFYHLEET----VQEYYGFKH-------VVPTHQGRGAENLLSRIAIK-------------PGQYV--PGNMYF  126 (460)
T ss_pred             hhcCCCcHHHHHHH----HHHHHCCCe-------EEEeCCHHHHHHHHHHhCCC-------------CcCEE--CCccch
Confidence            36677888888887    788889975       78999999999875432211             13443  777777


Q ss_pred             hHHHH-HHhhCCeeEEEEec---------CCccccCHHHHHHHHhhC----ceEEEEecCCCccc-cc---CCHHHHHHH
Q 018437          166 CWEKF-ARYFEVELKEVKLE---------EGYYVMNPVKAVELVDEN----TICVAAILGSTLTG-EF---EDVKLLHDL  227 (356)
Q Consensus       166 s~~~~-~~~~G~~v~~v~~~---------~~~~~~d~~~L~~~i~~~----~~~v~~~~~~~~tG-~~---~~i~~I~~i  227 (356)
                      +-..+ +...|+.+.-+..+         +.+|.+|+++|+++|+++    +.+|.+..++|..| ..   .++++|.++
T Consensus       127 ~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~el  206 (460)
T PRK13237        127 TTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVREL  206 (460)
T ss_pred             HhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHH
Confidence            65555 66677743333211         345899999999999763    33566677778774 44   578999999


Q ss_pred             HHHhhhccCCCCcEEEecccccccccccC-------CCCcccc-c--CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          228 LTKKNEETGWDTPIHVDAASGGFIAPFLY-------PDLEWDF-R--LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-------~~~~~~~-~--~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      |++|      |+++|.|+|....-.-|..       +....++ +  ...+|.+++|+||-+.+|.| |+++++++++.
T Consensus       207 A~~~------Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~  278 (460)
T PRK13237        207 CDKH------GIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELF  278 (460)
T ss_pred             HHHc------CCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHH
Confidence            9999      9999999997644221111       1100000 0  23689999999999998885 88888886554

>PLN02452 phosphoserine transaminase

Probab=99.56  E-value=5.5e-14  Score=133.88  Aligned_cols=251  Identities=12%  Similarity=-0.035  Sum_probs=165.1

Q ss_pred             cCCCChHHHHHHHHHHh-ccc---CCC---cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASI-NKN---YVD---MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~-~~~---~~~---~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      .|...++.|.+++..-+ +-+   .+.   ...++.+.++.+++++.+.++++.+.+.   ....+..|||.++-.+++.
T Consensus        14 GP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y---~v~~l~Gsgt~~~ea~~~n   90 (365)
T PLN02452         14 GPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNY---EVLFLQGGASTQFAAIPLN   90 (365)
T ss_pred             CCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCc---eEEEEeCccHHHHHHHHHh
Confidence            34445677777765443 211   111   1235678889999999999999986421   2345557888888887777


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCc--cccCHHHHHHHHhhCceEEEEecCC
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGY--YVMNPVKAVELVDENTICVAAILGS  212 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~--~~~d~~~L~~~i~~~~~~v~~~~~~  212 (356)
                      +..+             ++++++-..+.++  +.+.++.+|...+.......+  ..+|+++++.  +++...|.+++..
T Consensus        91 l~~~-------------~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~hnE  155 (365)
T PLN02452         91 LCKP-------------GDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWEL--TPDAKFVHICANE  155 (365)
T ss_pred             cCCC-------------CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcCC--CCCCcEEEECCCC
Confidence            6432             3445544455544  566677778754444222211  2467776532  3567899999999


Q ss_pred             Ccccc-cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          213 TLTGE-FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       213 ~~tG~-~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      |.+|+ +.|++++.            +++++||+++..+..       ++++...++|.  .++||++ +|.|.|++++|
T Consensus       156 TstGv~~~~~~~i~------------~~~lvVDa~Ss~g~~-------pidv~~~~v~~--~saqK~l-GP~Gl~~v~vr  213 (365)
T PLN02452        156 TIHGVEFKDYPDVG------------NVPLVADMSSNFLSK-------PVDVSKYGVIY--AGAQKNV-GPSGVTIVIIR  213 (365)
T ss_pred             CCCcEecCcccccC------------CCeEEEECCccccCc-------ccCHHHcCEEE--Eeccccc-CCCCeEEEEEc
Confidence            99999 58877664            368999999987655       34554445555  5999988 69999999998


Q ss_pred             CCCCCccccccccCCCCCC--CCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          292 TKDDLPDELVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                      ++.+. ..-...+.|+...  ..+..+.+|++...++++..+|+.+-.+ |++.+.+++.+++++|+
T Consensus       214 ~~~l~-~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~  279 (365)
T PLN02452        214 KDLIG-NARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLY  279 (365)
T ss_pred             HHHHh-hcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            65331 1111112222211  0112344799999999999999999876 89999999999998875

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.56  E-value=3.3e-13  Score=128.93  Aligned_cols=213  Identities=10%  Similarity=-0.045  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCcccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCC-CCCCC
Q 018437           39 KEAAYQVINDELMLDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDK  116 (356)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~  116 (356)
                      ...+.+...+.. ..++..++|..+.+..+ ++.+.+++.+....  ..|....+..++++++.+++.+.+|.+ .+.  
T Consensus         6 ~~~~~~~~~~~~-~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~--~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~--   80 (357)
T TIGR03539         6 WDSLAPYKAKAA-SHPDGIVDLSVGTPVDPVPPLIRAALAAAADA--PGYPQTWGTPELREAIVDWLERRRGVPGLDP--   80 (357)
T ss_pred             HHHHHHHHHHhh-hCCCCeEEccCCCCCCCCCHHHHHHHHHHHhh--CCCCcccCCHHHHHHHHHHHHHhcCCCCCCc--
Confidence            344444444432 23333456665555433 46677777655432  234444577889999999999887765 322  


Q ss_pred             CCCeEEeCChhHHHHHHHHHH-HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHH
Q 018437          117 TAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKA  195 (356)
Q Consensus       117 ~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L  195 (356)
                       ..+++|+|+++++..++.++ .++             +++|++++++|+.+...++..|++++.++        |++.+
T Consensus        81 -~~I~it~G~~~~i~~~~~~l~~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~--------~~~~l  138 (357)
T TIGR03539        81 -TAVLPVIGTKELVAWLPTLLGLGP-------------GDTVVIPELAYPTYEVGALLAGATPVAAD--------DPTEL  138 (357)
T ss_pred             -CeEEEccChHHHHHHHHHHHcCCC-------------CCEEEECCCCcHHHHHHHHhcCCEEeccC--------Chhhc
Confidence             35889999999988877655 222             57899999999999999999999887664        22222


Q ss_pred             HHHHhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CC----
Q 018437          196 VELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LP----  266 (356)
Q Consensus       196 ~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~----  266 (356)
                      .   .+++++|++++|+||||.+-+   +++|.++|+++      ++++++|++|+.+..   .+.....+.  ..    
T Consensus       139 ~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~---~~~~~~~~~~~~~~~~~  206 (357)
T TIGR03539       139 D---PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARER------GAVVASDECYLELGW---EGRPVSILDPRVCGGDH  206 (357)
T ss_pred             C---ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHc------CeEEEEecchhhhcc---CCCCccceecccCCCcc
Confidence            2   247889999999999999865   66789999999      999999999975432   111000010  00    


Q ss_pred             CceEEEEcCCcCC-CCCcCeeEEEE
Q 018437          267 LVKSINVSGHKYG-LVYAGVGWVVW  290 (356)
Q Consensus       267 ~~Ds~~~~~hK~l-~~P~g~g~l~~  290 (356)
                      .-..+..|..|.+ .....+|+++.
T Consensus       207 ~~vi~~~S~SK~~~~~G~R~G~~i~  231 (357)
T TIGR03539       207 TGLLAVHSLSKRSNLAGYRAGFVAG  231 (357)
T ss_pred             ccEEEEeccccccCCCceeEEEEec
Confidence            0124555799975 45566898875

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.56  E-value=3.8e-13  Score=130.53  Aligned_cols=202  Identities=12%  Similarity=0.034  Sum_probs=137.5

Q ss_pred             CcccccccCCC-ChHHHHHHHHHHhccc-----CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHH
Q 018437           57 RLNLASFVTTW-MEPECDKLVMASINKN-----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        57 ~~~l~~~~~~~-~~~~v~~~i~~~~~~~-----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (356)
                      .++|+.+.+.. +++.+.+++.+.+...     ...|...++...+++++.+++.+. ++++     ..+++|+|+++++
T Consensus        35 ~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~-~~~~-----d~I~it~Ga~~al  108 (402)
T TIGR03542        35 IIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG-RIDP-----EEIFISDGAKCDV  108 (402)
T ss_pred             eEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc-CCCH-----HHEEECCCcHHHH
Confidence            35566655543 3567788877766531     123444567778887766654322 4554     3489999999998


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCC-----------eeEEEEecC-CccccCHHHHHHH
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV-----------ELKEVKLEE-GYYVMNPVKAVEL  198 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~-----------~v~~v~~~~-~~~~~d~~~L~~~  198 (356)
                      ... ..+..             .+++|+++.|+|..+...++..|+           +++.+|+++ +.+.+|++.    
T Consensus       109 ~~l-~~l~~-------------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----  170 (402)
T TIGR03542       109 FRL-QSLFG-------------SDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE----  170 (402)
T ss_pred             HHH-HHhcC-------------CCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc----
Confidence            764 33322             146899999999999999999999           889999864 235555432    


Q ss_pred             HhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCC---ceEE
Q 018437          199 VDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPL---VKSI  271 (356)
Q Consensus       199 i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~---~Ds~  271 (356)
                       .+++++|++++|+||||.+-+   +++|.++|+++      ++++++|++|..+...   +.....+. ...   .-.+
T Consensus       171 -~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~------~~~iI~De~y~~~~~~---~~~~~~~~~~~~~~~~vi~  240 (402)
T TIGR03542       171 -EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEH------GSLILFDAAYSAFISD---PSLPHSIFEIPGAKECAIE  240 (402)
T ss_pred             -cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc------CeEEEEEchhhhhccC---CCCCcchhhCCCCcccEEE
Confidence             146889999999999999966   78899999999      9999999999875431   11111111 111   1233


Q ss_pred             EEcCCcCCC-CCcCeeEEEEeC
Q 018437          272 NVSGHKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       272 ~~~~hK~l~-~P~g~g~l~~~~  292 (356)
                      .-|+.|.++ ....+|+++...
T Consensus       241 ~~SfSK~~g~pGlRiG~~i~~~  262 (402)
T TIGR03542       241 FRSFSKTAGFTGVRLGWTVVPK  262 (402)
T ss_pred             EecCccccCCCCcceEEEEecH
Confidence            457889874 567899998743

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.56  E-value=1.8e-14  Score=127.93  Aligned_cols=241  Identities=15%  Similarity=0.099  Sum_probs=160.1

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      -|..+..++|.++.- .--.|.+.+.+.+||.+    .|+++|-+.       +.|.++||++|++++++-+..      
T Consensus        33 ~PTdeMr~am~eA~v-gDdVyGeD~tt~rLE~~----vA~l~GKEA-------gLFv~SGTmgNllaIm~Hc~~------   94 (384)
T KOG1368|consen   33 VPTDEMRRAMAEASV-GDDVYGEDPTTNRLEQR----VAELFGKEA-------GLFVPSGTMGNLLAIMVHCHQ------   94 (384)
T ss_pred             CChHHHHHHHhhccc-CcccccCCccHHHHHHH----HHHHhCccc-------eeeecccccccHHHHHHHhcC------
Confidence            344567777765542 22346778888899887    788888876       899999999999999988763      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHH---HHhhCCeeEEEEecCCccccCHHHHHHHHhh--------CceEEEEecCCCcc
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKF---ARYFEVELKEVKLEEGYYVMNPVKAVELVDE--------NTICVAAILGSTLT  215 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~---~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~--------~~~~v~~~~~~~~t  215 (356)
                            .+.+||+.+..|.-....   ..+.|+-++.|...+ ++.||+++++.++..        -|++|++-.-.+.+
T Consensus        95 ------rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~-dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~  167 (384)
T KOG1368|consen   95 ------RGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNEN-DGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNC  167 (384)
T ss_pred             ------CCceEEeccchheeehhccChhhhccceeEeeeeCC-CCeeeHHHHHHhhcCCCCCccCCCceEEEeecccccc
Confidence                  145899999999653332   234566677777665 499999999999973        26889888888888


Q ss_pred             c-ccCCH---HHHHHHHHHhhhccCCCCcEEEeccc--ccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEE
Q 018437          216 G-EFEDV---KLLHDLLTKKNEETGWDTPIHVDAAS--GGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (356)
Q Consensus       216 G-~~~~i---~~I~~i~~~~~~~~~~~~~l~vD~a~--~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~  289 (356)
                      | .+-|+   ++|.++|+++      |+.+|.|||-  .+.+.   .. .+..--..-+||+++...|.+++|.|+-++ 
T Consensus       168 Gg~vlPle~~~~v~~lak~~------glkLH~DGARi~NAava---sg-V~vk~i~~~fDSVsiCLSKglgAPVGSViV-  236 (384)
T KOG1368|consen  168 GGKVLPLEELDRVKALAKRH------GLKLHMDGARIFNAAVA---SG-VPVKKICSAFDSVSICLSKGLGAPVGSVIV-  236 (384)
T ss_pred             CceEeeHHHHHHHHHHHhcc------CCeeecchhhhhhHHHH---cC-CCHHHHHHhhhhhhhhhhccCCCCcccEEE-
Confidence            8 66665   5678899999      9999999983  22211   11 111111346899999999999999985443 


Q ss_pred             EeCCCCCccccccccCCCCCCCCCccccCCCChh-HHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS-QIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~-~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                       .++.+..+.--+ -.-+++        |-|+.. .+++...+|+.-- .-++...++..++|+|+
T Consensus       237 -G~k~FI~kA~~~-RKalGG--------GmRQsGvLaaaaLval~~~~-~~L~~dHk~A~~lAe~~  291 (384)
T KOG1368|consen  237 -GSKDFIDKARHF-RKALGG--------GMRQSGVLAAAALVALDENV-PLLRADHKRAKELAEYI  291 (384)
T ss_pred             -ccHHHHHHHHHH-HHHhcC--------chhHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHh
Confidence             343333222000 011233        344333 2333444444432 36677777777777775

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.55  E-value=4.1e-13  Score=130.49  Aligned_cols=190  Identities=11%  Similarity=-0.023  Sum_probs=129.4

Q ss_pred             ChHHHHHHHHHHhcccCCCcccC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDMDEY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      .+|.+.+++.+.++........+   .+......++.+.+++++|.+.       .++.++|++||..++.++...    
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~-------~~~~~SG~~An~~ai~~l~~~----  128 (406)
T PRK13393         60 QHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEA-------ALLFTSGYVSNWAALSTLGSR----  128 (406)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCc-------EEEeCCcHHHHHHHHHHhhcC----
Confidence            45788888888876533222111   1233455677788999998753       566666678999888865321    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh----hCceEEEEecCCCcccccCC
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFED  220 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~~~~  220 (356)
                             ..++.|++....|.++...+...|.+++.++.      .|++.+++.+.    +++++|+++++++++|.+.|
T Consensus       129 -------~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~  195 (406)
T PRK13393        129 -------LPGCVILSDELNHASMIEGIRHSRAEKRIFRH------NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAP  195 (406)
T ss_pred             -------CCCCEEEEccchhHHHHHHHHHcCCeEEEeCC------CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhC
Confidence                   01356777788999998888888887776653      25666776664    35678999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccc-cccCCC-CcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPD-LEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~-~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      +++|.++|+++      ++++++|++|+.+++ +.-..- ....+ ....|.+..+.-|.++.+ | |+++.
T Consensus       196 l~~i~~l~~~~------~~~livDea~~~g~~g~~G~g~~~~~~~-~~~~~i~~~tlsKa~g~~-G-G~~~~  258 (406)
T PRK13393        196 IAEICDVAEKH------GAMTYLDEVHAVGLYGPRGGGIAEREGL-ADRLTIIEGTLAKAFGVM-G-GYITG  258 (406)
T ss_pred             HHHHHHHHHHc------CCEEEEECCccccccCCCCCchhhhcCC-CCCCeEEEEeCchhhccc-C-ceeeC
Confidence            99999999999      999999999984442 211000 00111 234677767889987543 3 66653

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.55  E-value=1e-13  Score=132.79  Aligned_cols=166  Identities=19%  Similarity=0.104  Sum_probs=125.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCC-CeEEecCCCcchHHHHHHhhCCe
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDK-PNIVTGANVQVCWEKFARYFEVE  177 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~-~~vi~s~~~h~s~~~~~~~~G~~  177 (356)
                      ++++.+++++|+++     ..+++|+|+++++.+++.++..+             + +.|+++.++|..+...++..|++
T Consensus        63 ~lr~~ia~~~~~~~-----~~I~~t~G~~~~l~~~~~~~~~~-------------g~~~vlv~~p~y~~~~~~~~~~g~~  124 (364)
T PRK04781         63 GLRSALAALYGCAP-----EQLLIGRGSDEAIDLLVRALCVP-------------GRDAVLVTPPVFGMYAVCARLQNAP  124 (364)
T ss_pred             HHHHHHHHHhCcCh-----HHEEEeCCHHHHHHHHHHHhcCC-------------CCCeEEEcCCChHHHHHHHHHcCCE
Confidence            55566788888876     34899999999999988877542             3 57999999988888888999999


Q ss_pred             eEEEEecC--CccccCHHHHHHHH-hhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          178 LKEVKLEE--GYYVMNPVKAVELV-DENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       178 v~~v~~~~--~~~~~d~~~L~~~i-~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      ++.+|+++  +++.+|++++.+++ .+++++|++++|+||||.+.+.+++.++++...+    ++++++|++|+.+... 
T Consensus       125 ~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~----~~~iI~Deay~~f~~~-  199 (364)
T PRK04781        125 LVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQG----KALVVVDEAYGEFSDV-  199 (364)
T ss_pred             EEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCC----CcEEEEeCcchhhcCC-
Confidence            99999842  34678999986554 5688999999999999999999999999886522    6899999999875421 


Q ss_pred             cCCCCcccc-c-CCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          255 LYPDLEWDF-R-LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       255 ~~~~~~~~~-~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                        +. .... . .+++ .+.-++.|.++ ....+|+++..
T Consensus       200 --~~-~~~~~~~~~~v-i~~~SfSK~~gl~GlRvGy~v~~  235 (364)
T PRK04781        200 --PS-AVGLLARYDNL-AVLRTLSKAHALAAARIGSLIAN  235 (364)
T ss_pred             --cc-hHHHHhhCCCE-EEEecChhhcccccceeeeeeCC
Confidence              10 0111 1 1222 34467899765 66889998863

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.55  E-value=2.3e-13  Score=132.36  Aligned_cols=197  Identities=13%  Similarity=-0.067  Sum_probs=129.8

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+....... ...+......++.+.+++++|.+.     ..+++++||++|+..++.+++...      
T Consensus        53 ~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~-----~~v~~~~sgsea~~~al~~~~~~~------  120 (413)
T cd00610          53 NHPEVVEALKEQLAKLTHFS-LGFFYNEPAVELAELLLALTPEGL-----DKVFFVNSGTEAVEAALKLARAYT------  120 (413)
T ss_pred             CCHHHHHHHHHHHHhCcCcc-CcccCCHHHHHHHHHHHHhCCCCC-----CEEEEcCcHHHHHHHHHHHHHHHc------
Confidence            45778888887775432211 111345667788888999998643     238899999999999999887531      


Q ss_pred             cCCCCCCCeEEecCCCcch-HHHHHHhhC------------CeeEEEEecCC-----ccccCHHHHHHHHhh---CceEE
Q 018437          148 QGKPYDKPNIVTGANVQVC-WEKFARYFE------------VELKEVKLEEG-----YYVMNPVKAVELVDE---NTICV  206 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s-~~~~~~~~G------------~~v~~v~~~~~-----~~~~d~~~L~~~i~~---~~~~v  206 (356)
                           .+++|++.++.++. ........+            .+++.+|.+..     ++..|+++|++.+++   ++++|
T Consensus       121 -----~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v  195 (413)
T cd00610         121 -----GRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAV  195 (413)
T ss_pred             -----CCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEE
Confidence                 14567776655444 333332222            23566666521     245689999999976   46677


Q ss_pred             EEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC
Q 018437          207 AAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY  282 (356)
Q Consensus       207 ~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P  282 (356)
                      +++..++++|.+.+    +++|.++|+++      ++++++|++|+++..  .......+......|.++++  |+++++
T Consensus       196 i~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~g~g~--~g~~~~~~~~~~~~d~~t~s--K~l~~g  265 (413)
T cd00610         196 IVEPIQGEGGVIVPPPGYLKALRELCRKH------GILLIADEVQTGFGR--TGKMFAFEHFGVEPDIVTLG--KGLGGG  265 (413)
T ss_pred             EEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CcchhhHhhcCCCCCeEEEc--ccccCc
Confidence            77777777798877    99999999999      999999999986421  11000111111134666554  998877


Q ss_pred             cCeeEEEEe
Q 018437          283 AGVGWVVWR  291 (356)
Q Consensus       283 ~g~g~l~~~  291 (356)
                      ..+|+++.+
T Consensus       266 ~~~g~~~~~  274 (413)
T cd00610         266 LPLGAVLGR  274 (413)
T ss_pred             cccEEEEEc
Confidence            889998765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.55  E-value=4.4e-14  Score=142.78  Aligned_cols=166  Identities=13%  Similarity=-0.022  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH-HHhhCC
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF-ARYFEV  176 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~-~~~~G~  176 (356)
                      .+..+..|++||.+.      .-.+++|+|.+|..++.++..+             ++.|++....|-|+.+. +.+.|+
T Consensus       177 ~eAq~~AA~~fgAd~------tyFlvNGTS~gn~a~i~a~~~~-------------Gd~VLvdRN~HKSv~hgaLiLsGa  237 (720)
T PRK13578        177 KDAQKHAAKVFNADK------TYFVLNGTSASNKVVTNALLTP-------------GDLVLFDRNNHKSNHHGALIQAGA  237 (720)
T ss_pred             HHHHHHHHHHhCCCc------eEEEeCChhHHHHHHHHHhcCC-------------CCEEEeecccHHHHHHHHHHHcCC
Confidence            356677999999986      2578889999999999888754             68999999999999995 889999


Q ss_pred             eeEEEEecCCc----cccCH-----HHHHHHHhhC----------ceEEEEecCCCcccccCCHHHHHHH-HHHhhhccC
Q 018437          177 ELKEVKLEEGY----YVMNP-----VKAVELVDEN----------TICVAAILGSTLTGEFEDVKLLHDL-LTKKNEETG  236 (356)
Q Consensus       177 ~v~~v~~~~~~----~~~d~-----~~L~~~i~~~----------~~~v~~~~~~~~tG~~~~i~~I~~i-~~~~~~~~~  236 (356)
                      .+++++...+.    +.+++     +.++++|.+.          .+++++++||.. |.+.|++.|+++ ++.+     
T Consensus       238 ~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYd-G~~ydi~~I~~~~~h~~-----  311 (720)
T PRK13578        238 TPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYD-GTIYNARQVVDKIGHLC-----  311 (720)
T ss_pred             eEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCc-ceeecHHHHHHHhhccC-----
Confidence            99999865321    34454     4488888754          478999999887 999999999998 6777     


Q ss_pred             CCCcEEEecccccccccccCCC----CcccccCCCce----EEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          237 WDTPIHVDAASGGFIAPFLYPD----LEWDFRLPLVK----SINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       237 ~~~~l~vD~a~~~~~~~~~~~~----~~~~~~~~~~D----s~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                       + ++|||+|||+...  +.+.    .+..+ ..++|    .++-|.||.+.+-..++++.+++.
T Consensus       312 -~-~llvDEAhgah~~--F~p~~~~~p~~al-~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~  371 (720)
T PRK13578        312 -D-YILFDSAWVGYEQ--FIPMMADCSPLLL-ELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDN  371 (720)
T ss_pred             -C-cEEEeCcchhhhc--cCcccccCChhhh-hcCCCCCCeEEEEChhhcchhhhhHhhhhcCCc
Confidence             7 9999999998654  3331    11111 34888    999999999988899999988764

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.55  E-value=3.9e-13  Score=131.04  Aligned_cols=213  Identities=16%  Similarity=0.113  Sum_probs=141.4

Q ss_pred             cccccccCCC-C--hHHHHHHHHHHhccc-----CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHH
Q 018437           58 LNLASFVTTW-M--EPECDKLVMASINKN-----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (356)
Q Consensus        58 ~~l~~~~~~~-~--~~~v~~~i~~~~~~~-----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (356)
                      ++|+.+.+.. +  .+.+.+++...++..     ...|....+...+++.+.+++.+.+|++.+.   ..+++|+|++++
T Consensus        33 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~---~~I~it~Ga~~a  109 (416)
T PRK09440         33 IMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISP---QNIALTNGSQSA  109 (416)
T ss_pred             eeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCh---hhEEEccChHHH
Confidence            4555555442 1  235667776665432     1235455577899999999999888876422   458999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEe-cCCCcchHHHHHHhhC----CeeEEEEecCC--ccccCHHHHHHHHhhC
Q 018437          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVT-GANVQVCWEKFARYFE----VELKEVKLEEG--YYVMNPVKAVELVDEN  202 (356)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~vi~-s~~~h~s~~~~~~~~G----~~v~~v~~~~~--~~~~d~~~L~~~i~~~  202 (356)
                      +.+++.++.+.        +.+..++.|++ ..|+|+.|...+...|    .++..++++.+  ++.+|+++|+  +.++
T Consensus       110 l~~~~~~l~~~--------~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~  179 (416)
T PRK09440        110 FFYLFNLFAGR--------RADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDED  179 (416)
T ss_pred             HHHHHHHHhcc--------ccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCC
Confidence            99888877531        00112468998 6999999887665433    33344455432  3689999997  4567


Q ss_pred             ceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC
Q 018437          203 TICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (356)
Q Consensus       203 ~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l  279 (356)
                      ++++++++|+||||.+.+   +++|.++|+++      ++++++|++|+.+............. .+++ .+..|+.|.+
T Consensus       180 ~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~------~~~iI~De~Y~~~~~~~~~~~~~~~~-~~~v-I~~~SfSK~~  251 (416)
T PRK09440        180 TGAICVSRPTNPTGNVLTDEELEKLDALARQH------NIPLLIDNAYGPPFPGIIFSEATPLW-NPNI-ILCMSLSKLG  251 (416)
T ss_pred             ceEEEEecCCCCCCccCCHHHHHHHHHHHHHc------CCcEEEeCCccccCCCcchhhcCccc-cCCe-EEEecccccC
Confidence            889999999999999965   67888899999      99999999997432110000000000 1121 3345789987


Q ss_pred             CCCcCeeEEEEe
Q 018437          280 LVYAGVGWVVWR  291 (356)
Q Consensus       280 ~~P~g~g~l~~~  291 (356)
                      .....+|+++..
T Consensus       252 ~pGlRiG~~i~~  263 (416)
T PRK09440        252 LPGVRCGIVIAD  263 (416)
T ss_pred             CCcceEEEEeCC
Confidence            777889998753

>PLN02822 serine palmitoyltransferase

Probab=99.55  E-value=3e-13  Score=133.81  Aligned_cols=210  Identities=14%  Similarity=0.043  Sum_probs=139.7

Q ss_pred             cCCCCcccccccC-C-CChHHHHHHHHHHhcccCCCccc---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChh
Q 018437           53 DGNPRLNLASFVT-T-WMEPECDKLVMASINKNYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS  127 (356)
Q Consensus        53 ~~~~~~~l~~~~~-~-~~~~~v~~~i~~~~~~~~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt  127 (356)
                      +|+..++|.++.. . ..+|.+.+++.+++.....++..   .-+......++.+.+++++|.+.      .+++++|++
T Consensus       107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~------~i~~s~G~~  180 (481)
T PLN02822        107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPD------SILYSYGLS  180 (481)
T ss_pred             CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCC------EEEECCHHH
Confidence            3443345544322 1 24578888888888753332221   22445666677788999998753      366777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHh--hCc-
Q 018437          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVD--ENT-  203 (356)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~--~~~-  203 (356)
                       ++..++.++.++             ++.|++....|+++...+.+.|.+++.++.++ +++..+++++++...  +++ 
T Consensus       181 -a~~sai~a~~~~-------------gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~  246 (481)
T PLN02822        181 -TIFSVIPAFCKK-------------GDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLR  246 (481)
T ss_pred             -HHHHHHHHhCCC-------------CCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCc
Confidence             666777665432             57888999999999999999999998887653 223333444433321  234 


Q ss_pred             eEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC---cccccCCCceEEEEcCCcCCC
Q 018437          204 ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL---EWDFRLPLVKSINVSGHKYGL  280 (356)
Q Consensus       204 ~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~---~~~~~~~~~Ds~~~~~hK~l~  280 (356)
                      ++|++..+.+++|.+.|+++|.++|++|      ++++++|++|+.+++.-. ...   .+.+....+|.++.+..|.++
T Consensus       247 ~~Ivve~i~~~~G~i~~L~~i~~l~~k~------~~~LIvDEa~s~gvlG~~-G~G~~e~~~v~~~~~dii~~s~sKalg  319 (481)
T PLN02822        247 RYIVVEAIYQNSGQIAPLDEIVRLKEKY------RFRVLLDESNSFGVLGKS-GRGLSEHFGVPIEKIDIITAAMGHALA  319 (481)
T ss_pred             EEEEEecCCCCCCCccCHHHHHHHHHHc------CCEEEEECCccccccCCC-CCChHHHcCCCCCCCeEEEecchhhhh
Confidence            6888889999999999999999999999      999999999985544200 100   011212357889999999874


Q ss_pred             CCcCeeEEEEe
Q 018437          281 VYAGVGWVVWR  291 (356)
Q Consensus       281 ~P~g~g~l~~~  291 (356)
                       ..| |+++.+
T Consensus       320 -~~G-G~i~g~  328 (481)
T PLN02822        320 -TEG-GFCTGS  328 (481)
T ss_pred             -hCC-eEEEcC
Confidence             444 676643

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.55  E-value=2.1e-13  Score=129.13  Aligned_cols=192  Identities=17%  Similarity=0.097  Sum_probs=131.9

Q ss_pred             ccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH
Q 018437           59 NLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        59 ~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (356)
                      +|..+.+. ++++.+.+++.+++.....+....++...+++.+.+++.+. ++++     ..+++|+|+++++..++.++
T Consensus        23 ~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~~~~Lr~aia~~~~~~-~~~~-----~~i~it~Ga~~~i~~~~~~~   96 (335)
T PRK14808         23 YLALNENPFPFPEDLVDEVFRRLNSDTLRIYYDSPDEELIEKILSYLDTD-FLSK-----NNVSVGNGADEIIYVMMLMF   96 (335)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCCChHHHHHHHHHHhCCC-CCCc-----ceEEEcCCHHHHHHHHHHHh
Confidence            34333333 34567888887765432212112235566666655544432 1554     34899999999998888754


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccc
Q 018437          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (356)
                                       +.|++++|+|..+..+++..|++++.+|++++ +.++...    + ++++++++++|+||||.
T Consensus        97 -----------------d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~----~-~~~~~i~i~nP~NPTG~  153 (335)
T PRK14808         97 -----------------DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD-LRIPEVN----V-GEGDVVFIPNPNNPTGH  153 (335)
T ss_pred             -----------------CcEEECCCCHHHHHHHHHHcCCeEEEecCCCc-CCCChhH----c-cCCCEEEEeCCCCCCCC
Confidence                             25899999999999999999999999999864 6666443    2 34689999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-cc-CCCceEEEEcCCcCCC-CCcCeeEEEEeC
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR-LPLVKSINVSGHKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~  292 (356)
                      +-+.+++.+++ ++      ++++++|++|..+.-    .. ... +. .+. -.+..|..|.++ +...+|+++...
T Consensus       154 ~~s~~~l~~l~-~~------~~~ii~DE~Y~~f~~----~~-~~~~~~~~~~-vi~~~S~SK~~~l~GlRvG~~v~~~  218 (335)
T PRK14808        154 VFEREEIERIL-KT------GAFVALDEAYYEFHG----ES-YVDLLKKYEN-LAVIRTFSKAFSLAAQRIGYVVSSE  218 (335)
T ss_pred             CcCHHHHHHHH-hc------CCEEEEECchhhhcC----Cc-hHHHHHhCCC-EEEEEechhhccCcccceEEEEeCH
Confidence            99999999998 57      899999999986421    10 011 11 112 234456889876 567899998743

>PRK07505 hypothetical protein; Provisional

Probab=99.54  E-value=4.8e-13  Score=129.81  Aligned_cols=239  Identities=15%  Similarity=0.055  Sum_probs=140.7

Q ss_pred             CChHHHHHHHHHHhcccC-CCcccC--cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNY-VDMDEY--PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~-~~~~~~--~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      +.+|.+.+++.+.+.... ..+..+  ....+...++.+.+++++|. .       .++.++|++|+..++..++.... 
T Consensus        60 ~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~-------~~~~~sG~~a~~~ai~~~~~~~~-  130 (402)
T PRK07505         60 DTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA-S-------VLTFTSCSAAHLGILPLLASGHL-  130 (402)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC-C-------EEEECChHHHHHHHHHHHHhccc-
Confidence            345888898888776421 122111  23455667888899999987 3       45556678899888876543210 


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHH--hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCH
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCWEKFAR--YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDV  221 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~~~~~~--~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i  221 (356)
                          .  +.++..|+.....|.++.....  ..+.+++.+|.      .|+++|++++++++++++++.|+||+|.+.|+
T Consensus       131 ----~--~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~------~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~  198 (402)
T PRK07505        131 ----T--GGVPPHMVFDKNAHASLNILKGICADETEVETIDH------NDLDALEDICKTNKTVAYVADGVYSMGGIAPV  198 (402)
T ss_pred             ----C--CCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC------CCHHHHHHHHhcCCCEEEEEecccccCCcCCH
Confidence                0  0112234455577887643222  23456666664      27899999998778899999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccc-cccCCCC--cccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcc
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDL--EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~--~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~  298 (356)
                      ++|.++|+++      ++++++|++|+...+ ++-....  ......+....++.+.-|.++.+ | |++++.+++.. +
T Consensus       199 ~~i~~l~~~~------~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-G-g~~~~~~~~~~-~  269 (402)
T PRK07505        199 KELLRLQEKY------GLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-G-GVIMLGDAEQI-E  269 (402)
T ss_pred             HHHHHHHHHc------CCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-C-eEEEeCCHHHH-H
Confidence            9999999999      999999999843211 1100000  01110123345555788977544 3 66654443222 1


Q ss_pred             ccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHH
Q 018437          299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITF  342 (356)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~  342 (356)
                      .+..    ..   ..++..++.+....+++.++++.+..+.+.+
T Consensus       270 ~~~~----~~---~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~  306 (402)
T PRK07505        270 LILR----YA---GPLAFSQSLNVAALGAILASAEIHLSEELDQ  306 (402)
T ss_pred             HHHH----hC---CCceeCCCCCHHHHHHHHHHHHHHhccCcHH
Confidence            1110    00   1112224555444566667776555444433

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.53  E-value=8.7e-14  Score=131.47  Aligned_cols=155  Identities=17%  Similarity=0.035  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCee
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v  178 (356)
                      ++++++++++|.++     ..+++|+|+++++..+..++ .+             + .|+++.++|..+...++..|+++
T Consensus        51 ~lr~~la~~~~~~~-----~~i~~t~G~~~~i~~~~~~l-~~-------------g-~vl~~~p~y~~~~~~~~~~g~~~  110 (330)
T TIGR01140        51 ELRAAAAAYYGLPA-----ASVLPVNGAQEAIYLLPRLL-AP-------------G-RVLVLAPTYSEYARAWRAAGHEV  110 (330)
T ss_pred             HHHHHHHHHhCCCh-----hhEEECCCHHHHHHHHHHHh-CC-------------C-eEEEeCCCcHHHHHHHHHcCCEE
Confidence            55666888888865     24889999999887754332 21             3 68999999999999999999998


Q ss_pred             EEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEeccccccccccc
Q 018437          179 KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (356)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (356)
                      +.++        |++.|++++ +++++|++++|+||||.+.+   +++|+++|+++      ++++++|++|..+...  
T Consensus       111 ~~~~--------d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~--  173 (330)
T TIGR01140       111 VELP--------DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRAR------GGWLVVDEAFIDFTPD--  173 (330)
T ss_pred             EEeC--------CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhc------CCEEEEECcccccCCc--
Confidence            8876        788899988 45778999999999999987   66677888899      9999999999865431  


Q ss_pred             CCCCcccc-cCCCceEEEEcCCcCCCCC-cCeeEEEEeC
Q 018437          256 YPDLEWDF-RLPLVKSINVSGHKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       256 ~~~~~~~~-~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~  292 (356)
                       .. ..++ ....-+.+..+++|+++.| .++|+++.++
T Consensus       174 -~~-~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~  210 (330)
T TIGR01140       174 -AS-LAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHP  210 (330)
T ss_pred             -cc-hhhHhccCCCEEEEEecchhhcCchhhhhheeCCH
Confidence             11 1111 1123456777899987633 5679998754

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PLN02483 serine palmitoyltransferase

Probab=99.52  E-value=6.8e-13  Score=131.56  Aligned_cols=165  Identities=13%  Similarity=0.001  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHH
Q 018437           93 TTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR  172 (356)
Q Consensus        93 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~  172 (356)
                      ......++++.+|+++|.+.       .++.++|..+|..++.++..+             +++|+++++.|.++...++
T Consensus       144 ~~~~~~ele~~lA~~~g~~~-------ai~~~~G~~an~~~i~al~~~-------------Gd~Vi~d~~~h~s~~~~~~  203 (489)
T PLN02483        144 TTKLHRELEELVARFVGKPA-------AIVFGMGYATNSTIIPALIGK-------------GGLIISDSLNHNSIVNGAR  203 (489)
T ss_pred             CcHHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHhCCC-------------CCEEEEcchhhHHHHHHHH
Confidence            34455567777999999753       344455677777766665432             5799999999999999999


Q ss_pred             hhCCeeEEEEecCCccccCHHHHHHHHh-------hCc-----eEEE-EecCCCcccccCCHHHHHHHHHHhhhccCCCC
Q 018437          173 YFEVELKEVKLEEGYYVMNPVKAVELVD-------ENT-----ICVA-AILGSTLTGEFEDVKLLHDLLTKKNEETGWDT  239 (356)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~-------~~~-----~~v~-~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~  239 (356)
                      ..|++++.++.+      |+++|++.++       +++     ++++ +....+++|.+.++++|.++|+++      ++
T Consensus       204 ~~Ga~v~~~~~~------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~------~~  271 (489)
T PLN02483        204 GSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKY------KA  271 (489)
T ss_pred             HcCCeEEEEeCC------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHc------CC
Confidence            999999998854      3455555443       222     4444 444558899999999999999999      99


Q ss_pred             cEEEecccccccccccCCCC--cccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          240 PIHVDAASGGFIAPFLYPDL--EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       240 ~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      ++++|++|+.+.........  ...+....+|.+..+++|.++ +.| |+++.+
T Consensus       272 ~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g-~~G-G~i~~~  323 (489)
T PLN02483        272 YVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFG-SCG-GYIAGS  323 (489)
T ss_pred             EEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcc-cCc-eEEEcC
Confidence            99999999744321100000  012222367888899999874 445 777643

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.51  E-value=6.4e-13  Score=128.37  Aligned_cols=193  Identities=11%  Similarity=0.000  Sum_probs=127.2

Q ss_pred             ChHHHHHHHHHHhcccCCCccc---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      .+|.+.+++.+++++...+...   +-+......++.+.+++++|.+.       .++.++|..++..++.++.++    
T Consensus        13 ~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~-------al~~~sG~~a~~~~i~~l~~~----   81 (392)
T PLN03227         13 SSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTES-------AILYSDGASTTSSTVAAFAKR----   81 (392)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCc-------EEEecCcHHHHHHHHHHhCCC----
Confidence            3467777777776542211111   11222344556666999999874       455666677777777776432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh-----------hCceEEEEecCCC
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-----------ENTICVAAILGST  213 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-----------~~~~~v~~~~~~~  213 (356)
                               +++|++++..|.++...+...+++++.++.++   .-|++.+.+.+.           +++++|++..+.+
T Consensus        82 ---------GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d---~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~  149 (392)
T PLN03227         82 ---------GDLLVVDRGVNEALLVGVSLSRANVRWFRHND---MKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYK  149 (392)
T ss_pred             ---------CCEEEEeccccHHHHHHHHHcCCeEEEeCCCC---HHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcC
Confidence                     67999999999999888877787777666432   113444444443           2578899999999


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccC-CC-Cccccc-CCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PD-LEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~-~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      ++|.+.|+++|.++|++|      |+++++|++++.+...... .- ..+.+. ..++|.++.+.+|.+ +|.| |+++.
T Consensus       150 ~~G~i~~l~~i~~l~~~~------g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~g-g~v~~  221 (392)
T PLN03227        150 NTGTLAPLKELVALKEEF------HYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSVG-GMTVG  221 (392)
T ss_pred             CCCcccCHHHHHHHHHHc------CCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hccC-cEEec
Confidence            999999999999999999      9999999999743321000 00 001121 347899999999976 4554 45544


Q ss_pred             e
Q 018437          291 R  291 (356)
Q Consensus       291 ~  291 (356)
                      +
T Consensus       222 ~  222 (392)
T PLN03227        222 S  222 (392)
T ss_pred             C
Confidence            3

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.51  E-value=2.4e-13  Score=128.54  Aligned_cols=160  Identities=12%  Similarity=-0.019  Sum_probs=117.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCee
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v  178 (356)
                      ++++.+++.+|.++     ..+++|+|+++++.+++.. ..              ...|++++|+|..+...++..|+++
T Consensus        44 ~lr~~ia~~~~~~~-----~~I~it~Gs~~~l~~~~~~-~~--------------~~~vv~~~P~y~~y~~~~~~~G~~v  103 (332)
T PRK06425         44 DIEDQIKIYTQGLK-----IKVLIGPGLTHFIYRLLSY-IN--------------VGNIIIVEPNFNEYKGYAFTHGIRI  103 (332)
T ss_pred             HHHHHHHHHhCCCc-----ceEEECCCHHHHHHHHHHH-hC--------------CCcEEEeCCChHHHHHHHHHcCCeE
Confidence            56666899999986     3489999999999888753 22              1357777999999999999999999


Q ss_pred             EEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEeccccccccccc
Q 018437          179 KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (356)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (356)
                      +.||+++  ..+|++.+++   .++++|++++|+||||.+.+   +++|.++|+++      ++++++|++|+.+...  
T Consensus       104 ~~vp~~~--~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~------~~~iI~DE~Y~~~~~~--  170 (332)
T PRK06425        104 SALPFNL--INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKK------GALLFIDEAFIDFVPN--  170 (332)
T ss_pred             EEEeCCc--ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHc------CCEEEEecchhccccc--
Confidence            9999975  4567666653   37889999999999999865   56677788889      9999999999875431  


Q ss_pred             CCCCcccccCC-CceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          256 YPDLEWDFRLP-LVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       256 ~~~~~~~~~~~-~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ........... .--.+.-|+.|.++ ....+|+++..
T Consensus       171 ~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~  208 (332)
T PRK06425        171 RAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATD  208 (332)
T ss_pred             cchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecC
Confidence            00000111101 11233446889876 66788999864

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.51  E-value=4.1e-13  Score=126.89  Aligned_cols=250  Identities=12%  Similarity=-0.072  Sum_probs=162.6

Q ss_pred             cCCCChHHHHHHHHH-HhcccC---C---CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCe-EEeCChhHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMA-SINKNY---V---DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG-VGTVGSSEAIMLAGL  135 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~-~~~~~~---~---~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~-~~t~Ggt~a~~~al~  135 (356)
                      .|+..++.|.+.+.+ .++-+.   +   -...++.+.++.+++.+.++++++.|.+    ..+ .++.|||.+.-.+.+
T Consensus        11 GPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~----y~Vlfl~GggT~~~ea~~~   86 (364)
T PRK12462         11 GPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDE----YGVVFLQGGSSLQFSMIPM   86 (364)
T ss_pred             CCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCC----CeEEEEeccHHHHHHHHHH
Confidence            344455666665554 444221   1   1123568888999999999999999752    234 455568888888877


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEE-ecCCCcch--HHHHHHhhCCeeEEEEecCC---ccccCHHHHHHHHhhCceEEEEe
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIV-TGANVQVC--WEKFARYFEVELKEVKLEEG---YYVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi-~s~~~h~s--~~~~~~~~G~~v~~v~~~~~---~~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      .+..+             +++++ +-..++.+  +.+.++.+| ++..+...+.   ...++++.+  .+.++...|.+|
T Consensus        87 Nll~~-------------g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t  150 (364)
T PRK12462         87 NFSRP-------------GAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYV  150 (364)
T ss_pred             HcCCC-------------CCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEc
Confidence            76532             33332 22334333  555566666 6555542111   135566665  334567889999


Q ss_pred             cCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEE
Q 018437          210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (356)
Q Consensus       210 ~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~  289 (356)
                      +..|.+|+..|     ++.+.+      +.++++|+..+.+..|       +++.  ..|.+..+++|.++ |.|.++++
T Consensus       151 ~NETstGv~~~-----~~~~~~------~~llvvD~sS~~~s~p-------id~~--~~dvi~agsQKnlg-P~Gltvvi  209 (364)
T PRK12462        151 SNETVEGLQFP-----DAAGLP------DSPLIADMSSDFMSRP-------FDVE--AYGMVYAHAQKNLG-PAGVTVAI  209 (364)
T ss_pred             cCCCCceEecC-----cccccC------CCeEEEEcCchhhCCC-------CChH--HccEEEeeccccCC-CCceEEEE
Confidence            99999999876     333346      8899999988764442       3433  45999999999997 99999999


Q ss_pred             EeCCCCCccccccccCCCCCCC--CCccccCCCChhHHHHHHHHHHHhCHH--HHHHHHHHHHhccCccc
Q 018437          290 WRTKDDLPDELVFHINYLGSDQ--PTFTLNFSKGSSQIIAQYYQFIRLGFE--EITFTFISSLKVCPFLV  355 (356)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~tr~~~~~~~~~~~l~~lg~~--G~~~~~~~~~~~a~~l~  355 (356)
                      ++++.+- ......+.|+....  .......|++...+..+..+|+.+-.+  |++++.+++.+.|+.|+
T Consensus       210 vs~~al~-~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly  278 (364)
T PRK12462        210 IRRALLE-RVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLY  278 (364)
T ss_pred             ECHHHHh-hccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            9875331 11111122322110  111234599999899999999999888  99999999999988764

>PRK07049 methionine gamma-lyase; Validated

Probab=99.51  E-value=7.8e-13  Score=128.94  Aligned_cols=164  Identities=16%  Similarity=0.010  Sum_probs=118.9

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++.|.+.       .++++||+.|+..++.++.++             +++|+++.+.|..+..
T Consensus        82 ~Pt~~~Le~~----lA~leg~~~-------~iv~~sG~~Ai~~~l~al~~~-------------Gd~Vv~~~p~Y~~~~~  137 (427)
T PRK07049         82 HPNSEIVEDR----LAVYEGAES-------AALFSSGMSAIATTLLAFVRP-------------GDVILHSQPLYGGTET  137 (427)
T ss_pred             CcCHHHHHHH----HHHHhCCCc-------EEEEccHHHHHHHHHHHHhCC-------------CCEEEEcCCCcccHHH
Confidence            3455555554    888888653       788999999998888877653             5789999999988766


Q ss_pred             HH----HhhCCeeEEEEecCCccccCHHHHHHHHh-----hCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCc
Q 018437          170 FA----RYFEVELKEVKLEEGYYVMNPVKAVELVD-----ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (356)
Q Consensus       170 ~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-----~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~  240 (356)
                      .+    +.+|++++.++.     ..|+++|++++.     +++++|+++.|+||||.+.|+++|.++++..+.....+++
T Consensus       138 ~~~~~l~~~Gi~~v~~~~-----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~  212 (427)
T PRK07049        138 LLAKTFRNFGVGAVGFAD-----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPI  212 (427)
T ss_pred             HHHHHHHhcCcEEEEEeC-----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCE
Confidence            53    456887666651     246777877774     4689999999999999999999999999982110001899


Q ss_pred             EEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC--cCeeEEEE
Q 018437          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVW  290 (356)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P--~g~g~l~~  290 (356)
                      +++|++|..+..  ..   +.   ..++|.+..|..|++++.  .-.|+++.
T Consensus       213 vvvDety~~~~~--~~---pl---~~g~divv~S~SK~~gG~~glr~G~vv~  256 (427)
T PRK07049        213 IACDNTLLGPVF--QK---PL---EHGADLSVYSLTKYVGGHSDLVAGAVLG  256 (427)
T ss_pred             EEEECCcccccc--CC---cc---ccCCCEEEEcCceeecCCCCcEEEEEEC
Confidence            999999865432  11   12   236799999999998742  35677764

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.50  E-value=1.7e-13  Score=138.54  Aligned_cols=165  Identities=16%  Similarity=0.114  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~  177 (356)
                      .+..+..|++||++.      .-.+++|.|.+|..++.++..+             ++.|++....|-|+.+++.+.|+.
T Consensus       198 ~eAe~~AA~~fgAd~------tyfvvNGTS~~n~av~~a~~~~-------------Gd~VLvdRN~HKSv~haLilsga~  258 (714)
T PRK15400        198 KEAEEYIARVFNADR------SYMVTNGTSTANKIVGMYSAPA-------------GSTVLIDRNCHKSLTHLMMMSDVT  258 (714)
T ss_pred             HHHHHHHHHHhCCCc------EEEEeCchHHHHHHHHHHhcCC-------------CCEEEeecccHHHHHHHHHHcCCe
Confidence            356677999999986      2578888899999888887653             679999999999999999999999


Q ss_pred             eEEEEecCCc----cccC-----HHHHHHHHhhC-----ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEE
Q 018437          178 LKEVKLEEGY----YVMN-----PVKAVELVDEN-----TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV  243 (356)
Q Consensus       178 v~~v~~~~~~----~~~d-----~~~L~~~i~~~-----~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~v  243 (356)
                      +++++...+.    +.++     ++.++++|.+.     |+.+++++||.. |.+.|++.|.++|+.+      +  +||
T Consensus       259 PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYd-G~~yd~~~I~~~~~~~------~--ilv  329 (714)
T PRK15400        259 PIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYD-GLLYNTDFIKKTLDVK------S--IHF  329 (714)
T ss_pred             EEEecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCc-cEecCHHHHHHHhCCC------C--EEE
Confidence            9999875322    2345     89999999753     337889999666 9999999999999877      6  799


Q ss_pred             ecccccccccccCCCCcccccC-CCc---e--EEEEcCCcCCCCCcCeeEEEEeC
Q 018437          244 DAASGGFIAPFLYPDLEWDFRL-PLV---K--SINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       244 D~a~~~~~~~~~~~~~~~~~~~-~~~---D--s~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      |+|||++..  +.+..+....+ .++   |  .++-|.||.+.+-..++++.++.
T Consensus       330 DEAwgah~~--F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg  382 (714)
T PRK15400        330 DSAWVPYTN--FSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKG  382 (714)
T ss_pred             Eccchhhhc--cCcccCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcC
Confidence            999998654  33322111111 345   4  89999999998888888888765

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.49  E-value=7.1e-13  Score=134.01  Aligned_cols=165  Identities=13%  Similarity=0.079  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~  177 (356)
                      .+..+..|++||++.      .-.+++|+|.+|..++.++..+             ++.|++....|-|+.+++.+.|+.
T Consensus       198 ~eAe~~aA~~fgAd~------tyfvvNGTS~~n~av~~a~~~~-------------Gd~VLvdRN~HKSv~~aLilsga~  258 (713)
T PRK15399        198 LEAEEYIARTFGAEQ------SYIVTNGTSTSNKIVGMYAAPA-------------GSTLLIDRNCHKSLAHLLMMSDVV  258 (713)
T ss_pred             HHHHHHHHHHhCCCc------EEEEeCChHHHHHHHHHHhcCC-------------CCEEEeecccHHHHHHHHHHcCCe
Confidence            355667999999986      2578889999999999888654             689999999999999999999999


Q ss_pred             eEEEEecCCc----cccCH-----HHHHHHHhhC-----ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEE
Q 018437          178 LKEVKLEEGY----YVMNP-----VKAVELVDEN-----TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV  243 (356)
Q Consensus       178 v~~v~~~~~~----~~~d~-----~~L~~~i~~~-----~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~v  243 (356)
                      +++++...+.    +.+++     +.++++|.+.     |+.+++++||.. |.+.|++.|.++|  .      -.++||
T Consensus       259 PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYd-Gi~yd~~~I~~~~--g------~~~ilv  329 (713)
T PRK15399        259 PIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYD-GLLYNTDWIKQTL--D------VPSIHF  329 (713)
T ss_pred             eEEecccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCC-ceeeCHHHHHHHh--C------CCEEEE
Confidence            9999865321    34455     8999999752     368899999666 9999999999988  2      224589


Q ss_pred             ecccccccccccCCCCc--cccc-CCCceEE---EEcCCcCCCCCcCeeEEEEeC
Q 018437          244 DAASGGFIAPFLYPDLE--WDFR-LPLVKSI---NVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       244 D~a~~~~~~~~~~~~~~--~~~~-~~~~Ds~---~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      |+|||++..  +.+..+  .-+. ..++|.+   +-|.||.+.+-..++++.++.
T Consensus       330 DEAhgah~~--F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~  382 (713)
T PRK15399        330 DSAWVPYTH--FHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKG  382 (713)
T ss_pred             eccchhhhh--cCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecC
Confidence            999998653  233111  1121 1257777   999999999999999999865

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.47  E-value=1.1e-12  Score=125.66  Aligned_cols=159  Identities=20%  Similarity=0.066  Sum_probs=117.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++.|...       .+++++|..|+..++.++.++             +++|+++...|.....
T Consensus        54 nPt~~~le~~----la~Le~g~~-------a~~~~SGmaAi~~~l~~ll~~-------------Gd~iv~~~~~Y~~t~~  109 (386)
T PF01053_consen   54 NPTVRALEQR----LAALEGGED-------ALLFSSGMAAISAALLALLKP-------------GDHIVASDDLYGGTYR  109 (386)
T ss_dssp             -HHHHHHHHH----HHHHHT-SE-------EEEESSHHHHHHHHHHHHS-T-------------TBEEEEESSSSHHHHH
T ss_pred             cccHHHHHHH----HHHhhcccc-------eeeccchHHHHHHHHHhhccc-------------CCceEecCCccCcchh
Confidence            3455555554    888988864       678889999998988887653             5789988887766544


Q ss_pred             HHH----hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCC-CcEEEe
Q 018437          170 FAR----YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD-TPIHVD  244 (356)
Q Consensus       170 ~~~----~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~-~~l~vD  244 (356)
                      .++    ..|+++.+++.      -|+++|++++++++++|++-.|+||+..+.||++|+++||++      | ++++||
T Consensus       110 ~~~~~l~~~gv~v~~~d~------~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~------g~~~~vVD  177 (386)
T PF01053_consen  110 LLEELLPRFGVEVTFVDP------TDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEH------GDILVVVD  177 (386)
T ss_dssp             HHHHCHHHTTSEEEEEST------TSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHT------TT-EEEEE
T ss_pred             hhhhhhcccCcEEEEeCc------hhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHh------CCceEEee
Confidence            444    46888877754      278999999999999999999999999999999999999999      9 999999


Q ss_pred             cccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc--CeeEEEEeC
Q 018437          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRT  292 (356)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l~~~~  292 (356)
                      ..++.++.  +.   ++.   .|+|.+..|..|++.+..  =.|++++++
T Consensus       178 nT~atp~~--~~---pL~---~GaDivv~S~TKyl~Ghsdv~~G~vv~~~  219 (386)
T PF01053_consen  178 NTFATPYN--QN---PLE---LGADIVVHSATKYLSGHSDVMGGAVVVNG  219 (386)
T ss_dssp             CTTTHTTT--C----GGG---GT-SEEEEETTTTTTTSSSE-EEEEEESS
T ss_pred             ccccceee--ec---cCc---CCceEEEeeccccccCCcceeeEEEEECc
Confidence            99986533  11   222   379999999999986543  267777765

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.47  E-value=7.3e-12  Score=120.44  Aligned_cols=198  Identities=16%  Similarity=-0.011  Sum_probs=126.1

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+++.........++  .....++.+++++++|.+.       .++++||++|+..++.+++.....    .
T Consensus        45 ~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~g~~~-------~~~~~sg~~a~~~a~~~~~~~~~~----~  111 (379)
T TIGR00707        45 HPKLVEALKEQLEKLVHVSNLYY--TEPQEELAEKLVEHSGADR-------VFFCNSGAEANEAALKLARKYTGD----K  111 (379)
T ss_pred             CHHHHHHHHHHHhhccccccccC--CHHHHHHHHHHHhhCCCCE-------EEEeCCcHHHHHHHHHHHHHHhhc----c
Confidence            47788888777764321111121  2345567777999988763       889999999999999877542110    0


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCCeeE----EEEecCCcccc----CHHHHHHHHhhCceEEEEecCCCccccc--
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELK----EVKLEEGYYVM----NPVKAVELVDENTICVAAILGSTLTGEF--  218 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~----~v~~~~~~~~~----d~~~L~~~i~~~~~~v~~~~~~~~tG~~--  218 (356)
                      |  ..+++|+++.+++..+...+...+....    ..++..+ ...    |+++|++.+++++++|+++.+++++|..  
T Consensus       112 ~--~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~  188 (379)
T TIGR00707       112 G--KEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPG-FSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPA  188 (379)
T ss_pred             C--CCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCC-ceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccC
Confidence            0  0136888888776655544444444321    1233221 222    8999999998888999988777777754  


Q ss_pred             --CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          219 --EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       219 --~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                        +++++|.++|+++      ++++++|++|.++...  .........-...|.++  ..|.+.++.++|+++..+
T Consensus       189 ~~~~l~~i~~l~~~~------~~~~i~De~~~~~~~~--g~~~~~~~~~~~~d~~t--~sK~~~~G~riG~~~~~~  254 (379)
T TIGR00707       189 SAEFLKALREICKDK------DALLIFDEVQTGIGRT--GKFFAYEHYGIEPDIIT--LAKGLGGGVPIGATLAKE  254 (379)
T ss_pred             CHHHHHHHHHHHHHc------CCEEEEeccccCCCcc--chhhhHHhcCCCCCEEE--EcccccCCcccEEEEEcH
Confidence              2489999999999      9999999999764221  00001111111235554  579987777899988753

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.44  E-value=2e-11  Score=118.51  Aligned_cols=195  Identities=13%  Similarity=0.037  Sum_probs=123.4

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      ..|.+.+++.+.++........+.  .....++.+.+++++|.+.       .+++++|++|+..|+.+++.....   .
T Consensus        58 ~~~~i~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~-------~~~~~SGs~A~e~al~~a~~~~~~---~  125 (401)
T PRK00854         58 CHPKILAAMVEQAGRLTLTSRAFR--NDQLAPLYEELAALTGSHK-------VLPMNSGAEAVETAIKAVRKWGYE---V  125 (401)
T ss_pred             CCHHHHHHHHHHHhhccccccccC--CHHHHHHHHHHHhhCCCCE-------EEEeCCcHHHHHHHHHHHHHHHHh---c
Confidence            357888888887765322211111  1233345555788877643       789999999999999999764211   1


Q ss_pred             cCCCCCCCeEEecC-CCcchHHHHHHhhCC-------------eeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          148 QGKPYDKPNIVTGA-NVQVCWEKFARYFEV-------------ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       148 ~g~~~~~~~vi~s~-~~h~s~~~~~~~~G~-------------~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      +|.+.++++|++.. ..|-+...+.. .+.             ++..+|      ..|+++|++++.+++++|++..+++
T Consensus       126 ~g~~~~~~~vi~~~~~~HG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~i~~~~~aii~e~~~~  198 (401)
T PRK00854        126 KGVPEGQAEIIVCADNFHGRTLSIVG-FSTDPDARGGFGPFTPGFRVVP------FGDAEALEAAITPNTVAFLVEPIQG  198 (401)
T ss_pred             cCCCCCCceEEEECCCcCCccHHHHh-ccCCccccccCCCCCCCeEEeC------CCCHHHHHHHhCCCeEEEEEccccC
Confidence            12222234555554 44544333222 111             122222      1378999999988999999999999


Q ss_pred             cccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEEcCCcCCCCC-cCeeE
Q 018437          214 LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKYGLVY-AGVGW  287 (356)
Q Consensus       214 ~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~  287 (356)
                      ++|.+.|    +++|.++|++|      |+++++|++|.++..   .+.. ..+..-...|.++++  |++.+. +.+|+
T Consensus       199 ~~G~~~~~~~~l~~l~~l~~~~------gi~lI~DEv~~g~g~---~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~  267 (401)
T PRK00854        199 EAGVIIPPAGYFTRVRELCTAN------NVTLILDEIQTGLGR---TGKLLAEEHEGIEADVTLIG--KALSGGFYPVSA  267 (401)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhCCCC---CchHhHHhhcCCCCCEEEec--ccccCCccCeEE
Confidence            9999876    99999999999      999999999985322   1110 011111135766664  887665 35787


Q ss_pred             EEEeC
Q 018437          288 VVWRT  292 (356)
Q Consensus       288 l~~~~  292 (356)
                      ++.++
T Consensus       268 v~~~~  272 (401)
T PRK00854        268 VLSNS  272 (401)
T ss_pred             EEEcH
Confidence            87754

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.44  E-value=1.2e-11  Score=119.80  Aligned_cols=191  Identities=12%  Similarity=-0.039  Sum_probs=123.8

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+.........++.  ....++.+++++++|.+.    ...+.+++||++|+..++..++..        
T Consensus        61 ~p~v~~ai~~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~~~~----~~~v~~~~sgsea~~~al~~~~~~--------  126 (398)
T PRK03244         61 HPAVVEAVTRQLATLGHVSNLFAT--EPQIALAERLVELLGAPE----GGRVFFCNSGAEANEAAFKLARLT--------  126 (398)
T ss_pred             CHHHHHHHHHHHHhccCccCccCC--HHHHHHHHHHHHhCCCCC----CCEEEEeCchHHHHHHHHHHHHHH--------
Confidence            478888888777642211111221  122467777888888542    124899999999999999988753        


Q ss_pred             CCCCCCCeEEecCCCcchH-HHHHHhhCCe------------eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          149 GKPYDKPNIVTGANVQVCW-EKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~-~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      |    +..|+..+++|+.+ ..+....|..            +..+|.      .|+++|++.+.+++++|++..+++++
T Consensus       127 g----~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~~~~~~~aviiep~~~~~  196 (398)
T PRK03244        127 G----RTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY------GDVDALAAAVDDDTAAVFLEPIQGEA  196 (398)
T ss_pred             C----CCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC------CCHHHHHHhhcCCeEEEEEecccCCC
Confidence            1    24566555454433 3333333322            222221      37899999997788999999999999


Q ss_pred             cccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          216 GEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       216 G~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      |.+.|    +++|.++|++|      |+++|+|++|.++..  ...-......-...|.+++  .|+++++..+|.++.+
T Consensus       197 G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~g~~~~~~~~~~~pDi~t~--sK~l~~G~~ig~~~~~  266 (398)
T PRK03244        197 GVVPPPAGYLAAAREITDRH------GALLVLDEVQTGIGR--TGAWFAHQHDGVTPDVVTL--AKGLGGGLPIGACLAF  266 (398)
T ss_pred             CCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--cchHHhhhhhCCCCCEEEE--chhhhCCcccEEEEEc
Confidence            99876    89999999999      999999999976422  1000001111113566655  5998877789999886


Q ss_pred             CC
Q 018437          292 TK  293 (356)
Q Consensus       292 ~~  293 (356)
                      ++
T Consensus       267 ~~  268 (398)
T PRK03244        267 GP  268 (398)
T ss_pred             HH
Confidence            53

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.44  E-value=2.7e-12  Score=115.63  Aligned_cols=227  Identities=15%  Similarity=0.037  Sum_probs=167.0

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC-----cch
Q 018437           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV-----QVC  166 (356)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~-----h~s  166 (356)
                      .-..+-+.+..+++.++|....+     .+++.+.|--++..+.++.+.           ..+..||+++..     .|.
T Consensus        73 ~W~~lp~~lgdklApLiGA~~~E-----vvv~dtts~nl~k~L~aalr~-----------~~~r~vIv~E~~~fpTdly~  136 (407)
T COG3844          73 DWFDLPERLGDKLAPLIGARAGE-----VVVTDTTSINLFKVLAAALRP-----------QEGRRVIVSEGDNFPTDLYI  136 (407)
T ss_pred             chhhchhHHHHHhhhhhcCCCCc-----eEEeCCcchHHHHHHHHHhcc-----------CCCceEEeecCCCCCcchhh
Confidence            34455667888999999998744     455554444444455544332           114577777643     233


Q ss_pred             HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                      ....++++|+.     .+- .+.++++++++++++++.+|++++.+.-||..-|+.+|..+++++      ++++.-|-|
T Consensus       137 a~g~~~~~~~~-----~~~-~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~------galv~wDLA  204 (407)
T COG3844         137 AEGLADLLGIG-----YDL-EGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQH------GALVGWDLA  204 (407)
T ss_pred             hcchhhhhccc-----ccc-eeeeChHHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhc------CceEEeehh
Confidence            45566666655     222 267788999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCCC-cCeeEEEEeCCCCCccccccccCCCCCCCC-------------
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQP-------------  312 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~-------------  312 (356)
                      ++.+.+|       +++...++|+-+.++||++.+. .+.+.+++.++ ......+.-..|++...+             
T Consensus       205 HsaGavp-------~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~-h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga  276 (407)
T COG3844         205 HSAGAVP-------VDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPR-HRERSWPPLSGWWGHARPFAMEEVYAPGPGA  276 (407)
T ss_pred             cccCCcc-------eeecccCCCeeeeeeceeccCCCCCceeEEeccc-cccccccccccccCCCCcchhhhccCcCccc
Confidence            9988773       5666679999999999998764 45566666554 333454445667776421             


Q ss_pred             CccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          313 TFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       313 ~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ..-++||.+....+++..+|..++.-++.++.++.+.++.|+
T Consensus       277 ~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~f  318 (407)
T COG3844         277 RRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYF  318 (407)
T ss_pred             cceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHH
Confidence            012568888888899999999999999999999999888775

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.40  E-value=6.5e-12  Score=118.70  Aligned_cols=150  Identities=15%  Similarity=0.003  Sum_probs=108.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCee
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v  178 (356)
                      ++++.+++.+|.+.       +++|+|+++++.+++.+  .             .+++|+++.|+|..+...++..|+++
T Consensus        53 ~Lr~~ia~~~~~~~-------I~it~Gs~~al~~~~~~--~-------------~gd~v~v~~P~y~~~~~~~~~~g~~~  110 (330)
T PRK05664         53 GLEAAARAYYGAPQ-------LLPVAGSQAAIQALPRL--R-------------APGRVGVLSPCYAEHAHAWRRAGHQV  110 (330)
T ss_pred             HHHHHHHHHhCCCC-------EEECcCHHHHHHHHHHc--c-------------CCCEEEEcCCChHHHHHHHHHcCCeE
Confidence            45666888888643       89999999998776431  1             15789999999999999999999999


Q ss_pred             EEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEeccccccccccc
Q 018437          179 KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (356)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (356)
                      +.||++         +++++++ +++++++++||||||.+.+   +++|.++|+++      ++++++|++|..+.. . 
T Consensus       111 ~~v~~~---------~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~------~~~iI~DE~y~~~~~-~-  172 (330)
T PRK05664        111 RELDEA---------EVEAALD-SLDVLVVVNPNNPTGRRFDPARLLAWHARLAAR------GGWLVVDEAFMDNTP-Q-  172 (330)
T ss_pred             EEechh---------hHhhhhc-CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhc------CCEEEEECCcccCCC-c-
Confidence            998864         2445553 5778899999999999966   55566667888      999999999965421 0 


Q ss_pred             CCCCccccc-CCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          256 YPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       256 ~~~~~~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                       + ....+. .++ -.+.-++.|.++ ....+|+++..
T Consensus       173 -~-s~~~~~~~~~-vi~~~SfSK~~gl~GlRiG~~v~~  207 (330)
T PRK05664        173 -H-SLAACAHRPG-LIVLRSFGKFFGLAGARLGFVLAE  207 (330)
T ss_pred             -c-cccccccCCC-EEEEeeccccccCCCcceEEEEeC
Confidence             0 001111 111 134556899875 66789999874

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.39  E-value=2e-11  Score=120.23  Aligned_cols=197  Identities=15%  Similarity=-0.005  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHhcc---c-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           70 PECDKLVMASINK---N-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        70 ~~v~~~i~~~~~~---~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      ....+++...+..   . ...+....+...+++.+.+++....|+..+.   ..+++|+|+.+|+.+++.++.++     
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~---~~IiiT~G~q~al~l~~~~l~~p-----  178 (459)
T COG1167         107 EALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEP---EQIVITSGAQQALDLLLRLLLDP-----  178 (459)
T ss_pred             HHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCc---CeEEEeCCHHHHHHHHHHHhCCC-----
Confidence            4555555555432   2 2345555788999999999999888888643   36999999999999888887653     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEE-EEecCCCcccccCCH--
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICV-AAILGSTLTGEFEDV--  221 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v-~~~~~~~~tG~~~~i--  221 (356)
                              ++.|++-+|+|+....+.+.+|++++.||+|+  .-+|+++|++.+.. +++++ ++-..+||||+..+.  
T Consensus       179 --------Gd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~--~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~r  248 (459)
T COG1167         179 --------GDTVLVEDPTYPGALQALEALGARVIPVPVDE--DGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLER  248 (459)
T ss_pred             --------CCEEEEcCCCcHHHHHHHHHcCCcEEecCCCC--CCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHH
Confidence                    68999999999999999999999999999996  47999999999976 45554 466788999999776  


Q ss_pred             -HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          222 -KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       222 -~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                       ++|.++|++|      ++|++-|..|+.+...- .+.. ...+...+=-.+.-++.|.+...-.+|+++..
T Consensus       249 R~~Ll~lA~~~------~~~IIEDD~y~el~~~~-~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p  313 (459)
T COG1167         249 RKALLALAEKY------DVLIIEDDYYGELRYDG-PPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAP  313 (459)
T ss_pred             HHHHHHHHHHc------CCeEEeeCcchhhhcCC-CCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCC
Confidence             5799999999      99999999999755421 1110 01111223334455688999877899999874

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.35  E-value=9.1e-12  Score=121.52  Aligned_cols=166  Identities=11%  Similarity=-0.039  Sum_probs=134.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCee
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v  178 (356)
                      +..+..|+.+|.+.+      -.+++|.|.||...+.+...+             ++.|+++...|.|.....-+.|+.+
T Consensus        74 eAqe~aA~~fgAd~t------yFvvNGTS~ank~vi~a~~~~-------------GD~VLvdRN~HKSi~~glilaGa~P  134 (557)
T COG1982          74 EAQELAARVFGADHT------YFVVNGTSTANKAVINAVLTP-------------GDKVLVDRNCHKSIHHGLILAGATP  134 (557)
T ss_pred             HHHHHHHHHhCCCce------EEEECCccHHHHHHHHhhcCC-------------CCEEEecCCccHHHHHHHHHcCCce
Confidence            566779999999862      467788888998888887654             6899999999999999999999999


Q ss_pred             EEEEecCCc-----cccCHHHHHHHHhhC--c-eEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccc
Q 018437          179 KEVKLEEGY-----YVMNPVKAVELVDEN--T-ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (356)
Q Consensus       179 ~~v~~~~~~-----~~~d~~~L~~~i~~~--~-~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~  250 (356)
                      +++....+.     +.++.+.+++++.+.  . ++++++.|+.. |++-++++|.+.++++      ++|+.+|.+++..
T Consensus       135 vyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYd-Gv~~n~~~i~~~~~~~------~a~v~~deah~~~  207 (557)
T COG1982         135 VYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYD-GVCYNLRKIVELLHHY------GAWVLYDEAHPAH  207 (557)
T ss_pred             EEecCCCCccccccCCCCHHHHHHHHHhChhhheeEEEecCccc-eEeecHHHHHHHHhhc------CceEEhhhcCccc
Confidence            998874432     678999999988653  4 67888888777 9999999999999999      9999999998864


Q ss_pred             cccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          251 IAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       251 ~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      .-  +.+.. .+.. ..++|.++-|.||.+.+-..++++.+++.
T Consensus       208 ~~--~~~~l-~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~  248 (557)
T COG1982         208 FD--FSPML-PESALNGGADFVTQSTHKLLAALSQASMIHVKDG  248 (557)
T ss_pred             cc--ccccC-cchhhhcCceEEEechhhhhhhhhhhHHHhhCCC
Confidence            43  22221 1222 35899999999999988889999998863

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.35  E-value=1.1e-10  Score=112.91  Aligned_cols=200  Identities=13%  Similarity=-0.073  Sum_probs=125.2

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.++........+  ......++.++++++.+.+       .+.+++||++|+..++++++.....    
T Consensus        48 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~~~-------~v~~~~sGseA~~~al~~ar~~~~~----  114 (389)
T PRK01278         48 AHPHLVEALKEQAEKLWHVSNLY--RIPEQERLAERLVENSFAD-------KVFFTNSGAEAVECAIKTARRYHYG----  114 (389)
T ss_pred             CCHHHHHHHHHHHHhcCcccccc--CChHHHHHHHHHHhhCCCC-------EEEEcCCcHHHHHHHHHHHHHHHHh----
Confidence            35788888887776422111111  1233345666677776543       3899999999999999998764221    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEE----EecCCccc----cCHHHHHHHHhhCceEEEEecCCCccccc-
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEV----KLEEGYYV----MNPVKAVELVDENTICVAAILGSTLTGEF-  218 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v----~~~~~~~~----~d~~~L~~~i~~~~~~v~~~~~~~~tG~~-  218 (356)
                      +|. .++.+|++.++.|+.+...+...+......    |..+ ++.    .|++++++++++++++|++...++++|.+ 
T Consensus       115 ~G~-~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~  192 (389)
T PRK01278        115 KGH-PERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVP-GFDQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRP  192 (389)
T ss_pred             cCC-CCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCC-CceEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcC
Confidence            121 123578888777666544444433332221    2111 122    58999999998889999999888887743 


Q ss_pred             ---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          219 ---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       219 ---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                         +++++|.++|++|      |+++++|++|.++..  ...-......-...|.++  ..|.+.+.+..|+++.++
T Consensus       193 ~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~g~--~g~~~~~~~~~~~pdi~t--~sK~l~~G~~ig~~~~~~  259 (389)
T PRK01278        193 APDEFLKGLRQLCDEN------GLLLIFDEVQCGMGR--TGKLFAHEWAGVTPDIMA--VAKGIGGGFPLGACLATE  259 (389)
T ss_pred             CCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CCcceeecccCCCCCEEE--EehhccCCcceEEEEEcH
Confidence               5789999999999      999999999986432  110001111111245544  568876556688888754

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.34  E-value=8.3e-11  Score=114.47  Aligned_cols=203  Identities=14%  Similarity=0.020  Sum_probs=135.7

Q ss_pred             ChHHHHHHHHHHhcccCCCccc---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH--H
Q 018437           68 MEPECDKLVMASINKNYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW--Q  142 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~--~  142 (356)
                      .+|.+.++..+++.........   ..+...+.+++.+.+++++|.+.       .++.++|-.||+.++.++....  .
T Consensus       117 ~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~-------all~sSGy~AN~~~i~aL~~~~~~~  189 (476)
T PLN02955        117 SHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKED-------CLVCPTGFAANMAAMVAIGSVASLL  189 (476)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCc-------EEEECChHHHHHHHHHHHhhccccc
Confidence            3578888888777654433332   23555666677777999999986       6777888999988887763110  0


Q ss_pred             HHHHhcCCCCCCCeEEecCCCcchHHHHHHhh----CCeeEEEEecCCccccCHHHHHHHHhh---CceEEEEecCCCcc
Q 018437          143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYF----EVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLT  215 (356)
Q Consensus       143 ~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~----G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~t  215 (356)
                      ..+. .....+++.|++-...|.|+...+++.    +++++.++  -+    |+++|+++++.   +.++|++...-+..
T Consensus       190 ~~~~-~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~--HN----D~~~Le~~L~~~~~~~~~Vv~EgV~Smd  262 (476)
T PLN02955        190 AASG-KPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYR--HC----DMYHLNSLLSSCKMKRKVVVTDSLFSMD  262 (476)
T ss_pred             cccc-cccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeC--CC----CHHHHHHHHHhCCCCceEEEEeCCCCCC
Confidence            0000 000012346777788899999999876    35554433  22    78999988854   34677777778888


Q ss_pred             cccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       216 G~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      |.+.|+++|.++|++|      ++++++|+|++.+++..-..-....+. .+.+|.++.+.-|.+++.-  |+++.++
T Consensus       263 GdiapL~eL~~L~~~~------ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G--Gfi~gs~  332 (476)
T PLN02955        263 GDFAPMEELSQLRKKY------GFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG--GFIACSK  332 (476)
T ss_pred             CCcCCHHHHHHHHHHc------CcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC--ceeecHH
Confidence            9999999999999999      999999999997766321100001111 2468899999999975432  5565543

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.34  E-value=2.2e-10  Score=110.79  Aligned_cols=198  Identities=15%  Similarity=-0.007  Sum_probs=125.0

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      .|.+.+++.+.+.........+  ....+.++.++++++.|.+.       .++|+||++|+..++.+++....+     
T Consensus        57 ~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~~~~-------v~~~~gg~eA~~~al~~a~~~~~~-----  122 (396)
T PRK02627         57 HPKLVEAIQEQAAKLIHTSNLY--YIEPQEELAEKLVELSGMDK-------VFFCNSGAEANEAAIKLARKYGHK-----  122 (396)
T ss_pred             CHHHHHHHHHHHhhcccccccc--CCHHHHHHHHHHHhhcCCCE-------EEECCCcHHHHHHHHHHHHHHhcc-----
Confidence            4778888887765432111112  24566678888988877643       899999999999999988764210     


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhC-CeeE---EEEecCCcc----ccCHHHHHHHHhhCceEEEEecCCCcccc-c-
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFE-VELK---EVKLEEGYY----VMNPVKAVELVDENTICVAAILGSTLTGE-F-  218 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G-~~v~---~v~~~~~~~----~~d~~~L~~~i~~~~~~v~~~~~~~~tG~-~-  218 (356)
                       ....+++|++..+++..+...+...+ ....   ..++..+ .    ..|+++|++++.+++++|+++.+++++|. + 
T Consensus       123 -~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~  200 (396)
T PRK02627        123 -KGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEG-FIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPA  200 (396)
T ss_pred             -cCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCC-ceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccC
Confidence             00112567777666544333332222 2211   1122111 1    12899999999888999999999999884 3 


Q ss_pred             --CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          219 --EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       219 --~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                        +.+++|.++|+++      ++++++|++|.++...  .........-...|.++  ..|.+.+...+|+++.++
T Consensus       201 ~~~~l~~l~~l~~~~------~~~lI~DE~~~g~g~~--g~~~~~~~~~~~pdi~t--~sK~~~~G~rig~~~~~~  266 (396)
T PRK02627        201 DKEYLQALRELCDEN------GILLILDEVQTGMGRT--GKLFAYQHYGIEPDIMT--LAKGLGGGVPIGAVLAKE  266 (396)
T ss_pred             CHHHHHHHHHHHHHc------CCEEEEechhcCCCcc--CceeeehhcCCCCCEEE--EcchhhCCcccEEEEEcH
Confidence              3489999999999      9999999999865321  10001111111245555  458877667789988754

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.33  E-value=1.8e-10  Score=111.70  Aligned_cols=198  Identities=13%  Similarity=-0.005  Sum_probs=124.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.........  ......++.+.++++.+.+       ...++++|++|+..|+..++..+...  
T Consensus        56 h~~p~v~~ai~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~-------~~~~~~SGseA~e~Alk~a~~~~~~~--  124 (396)
T PRK04073         56 HRHPKIIQALKDQADKVTLTSRAF--HSDQLGPWYEKVAKLTGKD-------MVLPMNTGAEAVETAIKAARRWAYDV--  124 (396)
T ss_pred             CCCHHHHHHHHHHHhhcccccccc--CCHHHHHHHHHHHhcCCCC-------eEEEcCChHHHHHHHHHHHHHHhhhc--
Confidence            345888888887776432211111  1123334556677776653       27889999999999999987642211  


Q ss_pred             hcCCCCCCCeEEec-CCCcchHHHHHHhhCCe------------eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          147 EQGKPYDKPNIVTG-ANVQVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       147 ~~g~~~~~~~vi~s-~~~h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                       .|....+.+|+.. ...|-....++...+-.            +..+|.      -|+++|++++++++++|+++.++|
T Consensus       125 -~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~i~~~~~~viiep~~~  197 (396)
T PRK04073        125 -KGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY------GDLEALKAAITPNTAAFLVEPIQG  197 (396)
T ss_pred             -cCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC------CCHHHHHHhcccCeEEEEEcCccC
Confidence             1211123456655 44555544444433311            122221      178999999988899999999999


Q ss_pred             cccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-cCeeEE
Q 018437          214 LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWV  288 (356)
Q Consensus       214 ~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l  288 (356)
                      ++|.+.|    +++|.++|+++      |+++++|++|.++...  ......+......|.+++  .|.++++ ..+|++
T Consensus       198 ~~G~~~~~~~~l~~l~~l~~~~------g~lli~DEv~~g~g~~--g~~~~~~~~~~~pdi~~~--sK~lg~gg~~ig~~  267 (396)
T PRK04073        198 EAGINIPPEGFLKAARELCKEE------NVLFIADEIQTGLGRT--GKLFACDWDNVTPDMYIL--GKALGGGVFPISCV  267 (396)
T ss_pred             CCCCccCCHHHHHHHHHHHHHc------CCEEEEecchhCCCcC--cHHHHhhhcCCCCCEEEe--cccccCCCCcceEE
Confidence            9999855    89999999999      9999999999874321  000011111123576665  5876665 668888


Q ss_pred             EEeC
Q 018437          289 VWRT  292 (356)
Q Consensus       289 ~~~~  292 (356)
                      +.++
T Consensus       268 ~~~~  271 (396)
T PRK04073        268 AANR  271 (396)
T ss_pred             EEcH
Confidence            7753

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.33  E-value=3e-11  Score=111.97  Aligned_cols=186  Identities=13%  Similarity=0.028  Sum_probs=138.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      +.|...+.+++.+.+.+.-|-.... +....++|.|+|.+|...+.++.++             ++..++|.|.++.+..
T Consensus       120 y~Gl~~frqa~A~Fm~~~r~~~v~f-dP~~~Vv~~G~T~ane~l~fcLadp-------------gdafLvPtPyY~gfdr  185 (471)
T KOG0256|consen  120 YHGLPSFRQAVAEFMERARGNRVKF-DPERVVVTNGATSANETLMFCLADP-------------GDAFLVPTPYYPGFDR  185 (471)
T ss_pred             ccCchHHHHHHHHHHHHHhCCCCcc-CccceEEecccchhhHHHHHHhcCC-------------CceeeecCCCCCcccc
Confidence            5688899999999999987776554 2345889999999998887777654             5789999999999987


Q ss_pred             HHHh-hCCeeEEEEecC-CccccCHHHHHHHHhh------CceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCC
Q 018437          170 FARY-FEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWD  238 (356)
Q Consensus       170 ~~~~-~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~  238 (356)
                      -+++ .|++++.|.+.. ++++++.++||+++.+      +.+.|++++|+||.|++-+   +..+.+++.++      +
T Consensus       186 dl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k------n  259 (471)
T KOG0256|consen  186 DLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK------N  259 (471)
T ss_pred             cceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc------c
Confidence            7774 588898888865 5699999999998864      5789999999999999854   55667777888      9


Q ss_pred             CcEEEecccccccccccC--C--CCccccc-CCCceEEEEcCCcCCCCC-cCeeEEEEeCCCC
Q 018437          239 TPIHVDAASGGFIAPFLY--P--DLEWDFR-LPLVKSINVSGHKYGLVY-AGVGWVVWRTKDD  295 (356)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~--~--~~~~~~~-~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~~~~  295 (356)
                      +.+++|++|.+.+...-.  .  +...+.. .+.---+.++..|=++-| ...|+++..++..
T Consensus       260 iHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~V  322 (471)
T KOG0256|consen  260 IHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDV  322 (471)
T ss_pred             eEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHH
Confidence            999999999887653110  0  0001111 122334567777855444 5789998776533

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.32  E-value=1.3e-10  Score=112.59  Aligned_cols=203  Identities=13%  Similarity=-0.031  Sum_probs=124.4

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.++.........  ......++.+.+++++|.+.       ..++++|++|+..++..++......   
T Consensus        48 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~-------~~~~~SGs~A~e~al~~~~~~~~~~---  115 (400)
T PTZ00125         48 CHPKILAALINQAQKLTLTSRAF--YNDVLGLAEKYITDLFGYDK-------VLPMNSGAEAGETALKFARKWGYEV---  115 (400)
T ss_pred             CCHHHHHHHHHHHHhcccccccc--cCHHHHHHHHHHHhCCCCCE-------EEEeCCcHHHHHHHHHHHHHHHHhc---
Confidence            45788888887765322111111  12344566777888877653       6789999999999999887542211   


Q ss_pred             cCCCCCCCeEEecC-CCcchHHHHHHhhCCeeE---EEEecCC---ccccCHHHHHHHHh-hCceEEEEecCCCcccccC
Q 018437          148 QGKPYDKPNIVTGA-NVQVCWEKFARYFEVELK---EVKLEEG---YYVMNPVKAVELVD-ENTICVAAILGSTLTGEFE  219 (356)
Q Consensus       148 ~g~~~~~~~vi~s~-~~h~s~~~~~~~~G~~v~---~v~~~~~---~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~  219 (356)
                      .|.+..+.+|++.+ ..|-.....+...+....   ..+...+   -...|+++|+++++ +++++|++..++|++|.+.
T Consensus       116 ~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~  195 (400)
T PTZ00125        116 KGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIV  195 (400)
T ss_pred             cCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCcc
Confidence            11111234555544 445554444443332111   0011000   01138999999996 6788999988999999987


Q ss_pred             C----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc-CeeEEEEeC
Q 018437          220 D----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       220 ~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l~~~~  292 (356)
                      |    +++|.++|++|      |+++++|++|.++...  ......+..-...|.++++  |++.++. ++|+++.++
T Consensus       196 ~~~~~l~~l~~l~~~~------~~lli~Dev~~g~g~~--G~~~~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~  263 (400)
T PTZ00125        196 PDDGYLKQVYELCKKY------NVLLIVDEIQTGLGRT--GKLLAHDHEGVKPDIVLLG--KALSGGLYPISAVLAND  263 (400)
T ss_pred             CCHHHHHHHHHHHHHc------CCEEEEeccccCCCcc--chhhHHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcH
Confidence            7    99999999999      9999999998753220  0000111111134777654  9887664 789888764

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=99.30  E-value=6.6e-11  Score=114.89  Aligned_cols=249  Identities=11%  Similarity=0.023  Sum_probs=171.6

Q ss_pred             HHhcccCCCcc-cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCe
Q 018437           78 ASINKNYVDMD-EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPN  156 (356)
Q Consensus        78 ~~~~~~~~~~~-~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~  156 (356)
                      .+.|-++..|. ..++..++-.++.++++++.|+|.      ...-..+|..+-..++++.|.++..+    | +..+..
T Consensus       564 ~fanIHPF~P~eQaqGY~~lf~~Le~~Lc~iTG~D~------~s~QPNsGA~GEYaGL~~IRaY~~~k----g-e~hRnv  632 (1001)
T KOG2040|consen  564 EFANIHPFAPVEQAQGYQQLFTELEKDLCEITGFDS------FSLQPNSGAQGEYAGLRVIRAYLESK----G-EGHRNV  632 (1001)
T ss_pred             hhccCCCCCchHHHhhHHHHHHHHHHHhheeecccc------eeecCCCCcccchhhHHHHHHHHHhc----c-CCccee
Confidence            34444454443 356889999999999999999985      12233456677777888777764321    1 122347


Q ss_pred             EEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh---CceEEEEecCCCcccccC-CHHHHHHHHHHhh
Q 018437          157 IVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFE-DVKLLHDLLTKKN  232 (356)
Q Consensus       157 vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~-~i~~I~~i~~~~~  232 (356)
                      .++|..+|-.....+.+.|.+|+.|.++.+ |.+|..+|+++.++   +-.++.+++|+|. |+++ .|++++++.++| 
T Consensus       633 ClIPvSAHGTNPASA~MagmkvvpV~~~~~-G~id~~dLk~kaekh~~~Laa~MvTYPST~-GvfE~~i~d~cd~iHeh-  709 (1001)
T KOG2040|consen  633 CLIPVSAHGTNPASAAMAGMKVVPVGCDAN-GNIDMVDLKAKAEKHKDNLAALMVTYPSTH-GVFEEGIDDICDIIHEH-  709 (1001)
T ss_pred             EEEeecccCCChhhHHhcCCEEEEeeccCC-CCccHHHHHHHHHHhhhhhheeEEeccccc-ccccccHHHHHHHHHhc-
Confidence            889999999999999999999999999875 99999999988875   4568889999998 9995 599999999999 


Q ss_pred             hccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-----cCeeEEEEeCCCCCccccccccCC-
Q 018437          233 EETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-----AGVGWVVWRTKDDLPDELVFHINY-  306 (356)
Q Consensus       233 ~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-----~g~g~l~~~~~~~~~~~~~~~~~~-  306 (356)
                           |--+..|||-=..-...++|   -|   .|+|..-.+.||.++.|     +|.|-+.++.  .+..-++.++-. 
T Consensus       710 -----GGQVYlDGANMNAqVGlc~p---Gd---~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~--HLapfLP~HpVvs  776 (1001)
T KOG2040|consen  710 -----GGQVYLDGANMNAQVGLCRP---GD---IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK--HLAPFLPSHPVVS  776 (1001)
T ss_pred             -----CCEEEecCCCccceecccCC---cc---ccccceeecccceeeecCCCCCCCCCccchhh--hccccCCCCCccC
Confidence                 99999999842222211222   22   38999999999985544     5677788764  232222222111 


Q ss_pred             ---CCCCCCCccc----cCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          307 ---LGSDQPTFTL----NFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       307 ---~~~~~~~~~~----~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                         .++..+--+.    .||  +....-.|++++.+|..|+++.-+-++-+|.|.+
T Consensus       777 ~~~~~~~~~~gsVsaaP~Gs--a~ILpISwaYikmMG~~GL~~as~~AiLNaNYMa  830 (1001)
T KOG2040|consen  777 PGRPEDTSPVGSVSAAPWGS--ALILPISWAYIKMMGSGGLKDASKIAILNANYMA  830 (1001)
T ss_pred             CCCCCCCCCccceeccCCCc--ceeehhHHHHHHHhcccccchhhHHHhhhhHHHH
Confidence               1111000000    111  1112335999999999999998888888888864

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.30  E-value=1.7e-10  Score=109.76  Aligned_cols=221  Identities=15%  Similarity=0.019  Sum_probs=148.2

Q ss_pred             hHHHHHHHHHHhcccCCCccc---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           69 EPECDKLVMASINKNYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +|.+.+++.+++......-..   -.+...+-.++.+.+|+++|.+.       .++-++|=.||..++-++..+     
T Consensus        55 ~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~-------al~f~SGy~AN~~~i~~l~~~-----  122 (388)
T COG0156          55 HPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEA-------ALLFSSGFVANLGLLSALLKK-----  122 (388)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc-------EEEEcccchhHHHHHHHhcCC-----
Confidence            466777777777653222212   22455555566667999999985       444455577888877776542     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCcccccC
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFE  219 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~  219 (356)
                              ++.|+.-...|.|+...++..+++++...      .-|+++|++.+.+      +.++|+.-..-+..|.+.
T Consensus       123 --------~dli~~D~lnHASiidG~rls~a~~~~f~------HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiA  188 (388)
T COG0156         123 --------GDLIFSDELNHASIIDGIRLSRAEVRRFK------HNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIA  188 (388)
T ss_pred             --------CcEEEEechhhhhHHHHHHhCCCcEEEec------CCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcC
Confidence                    56788888999999999999888877654      2488999999976      257777777788899999


Q ss_pred             CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-----ccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCC
Q 018437          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-----WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (356)
Q Consensus       220 ~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-----~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~  294 (356)
                      |+++|.+++++|      +.|++||+|++.+++.   ++.+     +.+....+|.+..+..|.++   ..|.++.-+..
T Consensus       189 pL~~l~~L~~ky------~a~L~VDEAHa~Gv~G---~~GrG~~e~~g~~~~~vdi~~gTlsKAlG---s~Gg~v~g~~~  256 (388)
T COG0156         189 PLPELVELAEKY------GALLYVDEAHAVGVLG---PNGRGLAEHFGLEPEEVDIIVGTLGKALG---SSGGYIAGSAA  256 (388)
T ss_pred             CHHHHHHHHHHh------CcEEEEEccccccccC---CCCccHHHHhCCCCccceEEEEEchhhhc---ccCceeeCcHH
Confidence            999999999999      9999999999987763   2111     11112346899999999986   33444443332


Q ss_pred             CCcccccc-ccCCCCCCCCCccccCCCChhHHHHHHHHHHHhC
Q 018437          295 DLPDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG  336 (356)
Q Consensus       295 ~~~~~~~~-~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg  336 (356)
                      . .+.+.. ..+|+..        .+-+...+++...+++.+-
T Consensus       257 ~-~d~L~~~ar~~ifS--------talpP~~aaa~~~al~~l~  290 (388)
T COG0156         257 L-IDYLRNRARPFIFS--------TALPPAVAAAALAALRILE  290 (388)
T ss_pred             H-HHHHHHhCCceecc--------CCCCHHHHHHHHHHHHHHH
Confidence            2 122211 1233332        2334444666677777764

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.29  E-value=2.9e-11  Score=113.19  Aligned_cols=225  Identities=15%  Similarity=0.101  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChh-HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHh
Q 018437           95 ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY  173 (356)
Q Consensus        95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~  173 (356)
                      ++-+.+...+-+..|+...    ...++++.+| +++.+++.+++.+ +          ....|++|...|++..+++..
T Consensus        56 ~ltn~l~~d~~~~~G~~~~----~~~~~vP~atgm~l~l~l~~l~~r-~----------~a~~Viw~ridqkSc~kai~~  120 (389)
T PF05889_consen   56 KLTNSLVLDALRLAGLRSV----KSCFVVPMATGMSLTLCLLALRMR-P----------KAKYVIWPRIDQKSCFKAIER  120 (389)
T ss_dssp             HHHHHHHHHHHHHTTHTTH----CEEEEESS-HHHHHHHHHHHHHHH-C----------T--EEEEEEEETHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCccc----cceEEEecccccHHHHHHHHHhcc-c----------CCceEEEeeccccchHHHHHh
Confidence            3444555556677888741    1235555555 6666777777621 1          135899999999999999999


Q ss_pred             hCCeeEEEEe--cCCccccCHHHHHHHHhh---CceEEEEecCCCccccc-CCHHHHHHHHHHhhhccCCCCcEEEeccc
Q 018437          174 FEVELKEVKL--EEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAAS  247 (356)
Q Consensus       174 ~G~~v~~v~~--~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~-~~i~~I~~i~~~~~~~~~~~~~l~vD~a~  247 (356)
                      .|++++.||.  ..+....|.+.+++++++   +..+.++++.+-..|.. |++++|+++|++|      |++.++.+||
T Consensus       121 AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~------~IPhlvNnAY  194 (389)
T PF05889_consen  121 AGLEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEY------DIPHLVNNAY  194 (389)
T ss_dssp             TT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHH------T--EEEEGTT
T ss_pred             cCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHc------CCceEEccch
Confidence            9999999996  334467788999998864   45778888888888887 5599999999999      9999999999


Q ss_pred             ccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHH
Q 018437          248 GGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIA  327 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~  327 (356)
                      |-..... ......-.+..++|.++-+.-|.+.+|.|-+++...++... ..  ....|.+..          +....+-
T Consensus       195 gvQ~~~~-~~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i-~~--vs~~YpGRa----------s~sp~ld  260 (389)
T PF05889_consen  195 GVQSSKC-MHLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGI-LA--VSKEYPGRA----------SASPSLD  260 (389)
T ss_dssp             TTT-HHH-HHHHHHHHHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHH-HH--HHHTSHSHB----------TSHHHHH
T ss_pred             hhhHHHH-HHHHHHHHhcCCcceeeeecCCCEEecCCCcEEEecCHHHH-HH--HHHHhhhhh----------hcccchH
Confidence            8632211 11111122246899999999999999999888876543222 11  123454442          2345777


Q ss_pred             HHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          328 QYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       328 ~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +...|..+|..|+...+....++-.||
T Consensus       261 ~~itLl~LG~~g~~~ll~~r~~~f~~l  287 (389)
T PF05889_consen  261 LFITLLSLGCTGYGALLKERKASFPYL  287 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            889999999999999999888776554

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.29  E-value=5.6e-11  Score=112.77  Aligned_cols=153  Identities=14%  Similarity=0.037  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~  177 (356)
                      .++++.+++.+|++..    ..+++|+|+++++..... +..              .+.|+++.|+|..+...++..|++
T Consensus        56 ~~L~~~ia~~~~~~~~----~~I~i~~Gs~e~i~~l~~-~~~--------------~g~v~v~~P~y~~y~~~~~~~g~~  116 (339)
T PRK06959         56 DGLAACAARYYGAPDA----AHVLPVAGSQAAIRALPA-LLP--------------RGRVGIAPLAYSEYAPAFARHGHR  116 (339)
T ss_pred             HHHHHHHHHHhCCCCc----ccEEECcCHHHHHHHHHH-hcC--------------CCeEEEcCCCcHHHHHHHHHCCCE
Confidence            3677789999999741    248899999999865433 221              124888999999999999999999


Q ss_pred             eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHH---HHHhhhccCCCCcEEEecccccccccc
Q 018437          178 LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL---LTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       178 v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i---~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      ++.+|.++       +.    +.+.++++++++||||||.+-+.+++.++   |+++      +.++++|++|..+... 
T Consensus       117 ~~~v~~~~-------~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~------~~~vI~DEay~~~~~~-  178 (339)
T PRK06959        117 VVPLDEAA-------DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAAR------GGTLIVDEAFADTLPA-  178 (339)
T ss_pred             EEeecccc-------hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEECCCccCCCc-
Confidence            98887653       12    22345689999999999999776666655   5567      8899999999875321 


Q ss_pred             cCCCCcccc-cCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          255 LYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       255 ~~~~~~~~~-~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                        +.. ..+ ..+++ .+.-++.|.++ +...+|+++..
T Consensus       179 --~s~-~~~~~~~~v-i~l~SfSK~~gl~GlRiGy~v~~  213 (339)
T PRK06959        179 --ASL-AAHTDRPGL-VVLRSVGKFFGLAGVRAGFVLAA  213 (339)
T ss_pred             --ccc-hhccCCCCE-EEEecChhhcCCcchheEEEecC
Confidence              100 111 11221 34557899775 66789999864

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.28  E-value=5.6e-11  Score=111.85  Aligned_cols=157  Identities=24%  Similarity=0.113  Sum_probs=120.4

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----  166 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----  166 (356)
                      |....+|.    .++++.|...       ....++|..|+..++..+...             +++++.+...|.-    
T Consensus        77 Pt~~~le~----~iaal~ga~~-------~l~fsSGmaA~~~al~~L~~~-------------g~~iV~~~~~Y~gT~~~  132 (409)
T KOG0053|consen   77 PTRDVLES----GIAALEGAAH-------ALLFSSGMAAITVALLHLLPA-------------GDHIVATGDVYGGTLRI  132 (409)
T ss_pred             CchHHHHH----HHHHHhCCce-------EEEecccHHHHHHHHHHhcCC-------------CCcEEEeCCCcccHHHH
Confidence            44444544    4899998874       566777777888888777532             5678877655543    


Q ss_pred             HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                      +.+....+|++...++++      |++.+++++++++++|++-.|+||+..+-||++|.++|+++      |+.++||..
T Consensus       133 l~~~~~~~gie~~~vd~~------~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~------g~~vvVDnT  200 (409)
T KOG0053|consen  133 LRKFLPKFGGEGDFVDVD------DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKY------GFLVVVDNT  200 (409)
T ss_pred             HHHHHHHhCceeeeechh------hHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhC------CCEEEEeCC
Confidence            445555778888888775      46889999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEe
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWR  291 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~  291 (356)
                      +++++.  ..+   +   ..|||.++-|.-||+++...  .|+++.+
T Consensus       201 f~~p~~--~~p---L---~lGADIV~hSaTKyi~Ghsdvi~G~iv~n  239 (409)
T KOG0053|consen  201 FGSPYN--QDP---L---PLGADIVVHSATKYIGGHSDVIGGSVVLN  239 (409)
T ss_pred             cCcccc--cCh---h---hcCCCEEEEeeeeeecCCcceeeeEEecC
Confidence            987533  222   1   23799999999999877542  3666654

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.26  E-value=9.5e-11  Score=111.39  Aligned_cols=159  Identities=18%  Similarity=0.051  Sum_probs=120.4

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH--
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW--  167 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~--  167 (356)
                      .|....+|+.    ++.+-|...       ++.+++|..|+..+++++.++             +++|+++...|...  
T Consensus        62 nPT~~~lE~~----~a~LEg~~~-------~~afsSGmaAI~~~~l~ll~~-------------GD~vl~~~~~YG~t~~  117 (396)
T COG0626          62 NPTRDALEEA----LAELEGGED-------AFAFSSGMAAISTALLALLKA-------------GDHVLLPDDLYGGTYR  117 (396)
T ss_pred             CccHHHHHHH----HHHhhCCCc-------EEEecCcHHHHHHHHHHhcCC-------------CCEEEecCCccchHHH
Confidence            4566666655    788877764       778888899998888877653             58899888876553  


Q ss_pred             --HHHHHhhCCeeEEEEecCCccccCHHHHHHHHh-hCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEe
Q 018437          168 --EKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (356)
Q Consensus       168 --~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD  244 (356)
                        .+..+.+|+++.+++..      |.+++++++. ++|++|++-.|+||+..+.||++|+++|+++      |+.++||
T Consensus       118 ~~~~~l~~~gi~~~~~d~~------~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~------g~~vvVD  185 (396)
T COG0626         118 LFEKILQKFGVEVTFVDPG------DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAY------GALVVVD  185 (396)
T ss_pred             HHHHHHHhcCeEEEEECCC------ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhc------CCEEEEE
Confidence              34444568888877643      3456677776 5899999999999999999999999999999      9999999


Q ss_pred             cccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      ..++.++.  ..   ++   ..|+|.+.-|.-|++.+...  .|+++.++
T Consensus       186 NTfatP~~--q~---PL---~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~  227 (396)
T COG0626         186 NTFATPVL--QR---PL---ELGADIVVHSATKYLGGHSDVLGGVVLTPN  227 (396)
T ss_pred             CCcccccc--cC---hh---hcCCCEEEEeccccccCCcceeeeEEecCh
Confidence            99987554  22   22   24899999999999877643  35454444

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.22  E-value=3e-10  Score=104.71  Aligned_cols=149  Identities=13%  Similarity=0.071  Sum_probs=124.7

Q ss_pred             cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCC
Q 018437           83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN  162 (356)
Q Consensus        83 ~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~  162 (356)
                      ..+.|+.+++..-+++.+.+.+.+.=|.+.+   ...+..|+|+|.|+.+.+..+...            .++-|++|-|
T Consensus       105 s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~---p~dI~LT~GAS~ai~~il~l~~~~------------~~~GvliPiP  169 (475)
T KOG0258|consen  105 SLGAYSDSQGVPGVRKHVAEFIERRDGIPAD---PEDIFLTTGASPAIRSILSLLIAG------------KKTGVLIPIP  169 (475)
T ss_pred             cccccccccCChhHHHHHHHHHHhccCCCCC---HHHeeecCCCcHHHHHHHHHHhcC------------CCCceEeecC
Confidence            4456788899999999999999999996542   345899999999998888777542            2467999999


Q ss_pred             CcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhh-----CceEEEEecCCCccccc---CCHHHHHHHHHHhhh
Q 018437          163 VQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE-----NTICVAAILGSTLTGEF---EDVKLLHDLLTKKNE  233 (356)
Q Consensus       163 ~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~-----~~~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~  233 (356)
                      -|+-|...+..+|...+..-+|+ .+|.+|.++|++.+++     +++++++.+|-||||.+   ..+++|..+|.++  
T Consensus       170 QYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~--  247 (475)
T KOG0258|consen  170 QYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEE--  247 (475)
T ss_pred             CCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHc--
Confidence            99999999999998877666665 4699999999999875     57888899999999998   6789999999999  


Q ss_pred             ccCCCCcEEEecccccccc
Q 018437          234 ETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       234 ~~~~~~~l~vD~a~~~~~~  252 (356)
                          +++++.|++|-.-+.
T Consensus       248 ----~l~llaDEVYQ~Nvy  262 (475)
T KOG0258|consen  248 ----GLVLLADEVYQDNVY  262 (475)
T ss_pred             ----CeEEechHHHHhhcc
Confidence                999999999865444

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.21  E-value=3.8e-10  Score=107.77  Aligned_cols=192  Identities=13%  Similarity=0.077  Sum_probs=123.8

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      |++...++|..    .--.|..+|...+||+.    +++++|.+.       .+.|..|..++..++.+...+       
T Consensus        55 pS~~m~aAM~~----GDD~Y~gdpSv~~Lee~----vael~G~E~-------alpthqGRgaE~Il~~~~~~~-------  112 (467)
T TIGR02617        55 VTQSMQAAMMR----GDEAYSGSRSYYALAES----VKNIFGYQY-------TIPTHQGRGAEQIYIPVLIKK-------  112 (467)
T ss_pred             CCHHHHHHHHc----CCcccccCchHHHHHHH----HHHHhCCce-------EEECCCCchHHHHHHHhhccc-------
Confidence            45555555543    22236667787778766    788999985       788888899999998877642       


Q ss_pred             cCCCCCCCeE-------EecCCCcch-HHHHHHhhCCeeEEEEec--------C-CccccCHHHHHHHHhh----CceEE
Q 018437          148 QGKPYDKPNI-------VTGANVQVC-WEKFARYFEVELKEVKLE--------E-GYYVMNPVKAVELVDE----NTICV  206 (356)
Q Consensus       148 ~g~~~~~~~v-------i~s~~~h~s-~~~~~~~~G~~v~~v~~~--------~-~~~~~d~~~L~~~i~~----~~~~v  206 (356)
                      +     ++++       +++...|+- ..-.+.+.|+.++.++.+        . .+|.+|+++|+++|.+    +...+
T Consensus       113 ~-----g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v  187 (467)
T TIGR02617       113 R-----EQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI  187 (467)
T ss_pred             c-----cccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceee
Confidence            0     1222       334445544 234566778887776432        1 2489999999999984    23333


Q ss_pred             EEecCCCcc-ccc---CCHHHHHHHHHHhhhccCCCCcEEEeccccc---ccc----cccCCCCccccc---CCCceEEE
Q 018437          207 AAILGSTLT-GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGG---FIA----PFLYPDLEWDFR---LPLVKSIN  272 (356)
Q Consensus       207 ~~~~~~~~t-G~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~---~~~----~~~~~~~~~~~~---~~~~Ds~~  272 (356)
                      ..+..+|.. |.+   ++++++.++|++|      |+.+|.|||=-.   .++    +-..+....++.   ...+|+++
T Consensus       188 ~~tlt~N~~GGqpvslenlr~V~~la~~~------GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt  261 (467)
T TIGR02617       188 VATITCNSAGGQPVSLANLKAVYEIAKKY------DIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLA  261 (467)
T ss_pred             eeeEEEecCCCEEeCHHHHHHHHHHHHHc------CCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEE
Confidence            333333443 444   6778999999999      999999997321   110    000111111111   25799999


Q ss_pred             EcCCcCCCCCcCeeEEEEeCC
Q 018437          273 VSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       273 ~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      +|..|-+++|.| |+++.+++
T Consensus       262 ~slsKglgApvG-g~Lag~d~  281 (467)
T TIGR02617       262 MSAKKDAMVPMG-GLLCFKDD  281 (467)
T ss_pred             EEcCCCCCCccc-ceEEecch
Confidence            999999999998 67777776

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.21  E-value=9.9e-10  Score=100.59  Aligned_cols=258  Identities=12%  Similarity=0.016  Sum_probs=160.3

Q ss_pred             CChHHHHHHHHHHhcccC--CC-----cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCe--EEeCChhHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNY--VD-----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG--VGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~--~~-----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~--~~t~Ggt~a~~~al~~~  137 (356)
                      +....+.|++-+.+++..  +.     |....-..++|.-+++..-+.||++++    .||  +-..+||-||+.+..++
T Consensus        51 Fts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~----kWGVNVQp~SGSPANfavYtal  126 (477)
T KOG2467|consen   51 FTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPE----KWGVNVQPYSGSPANFAVYTAL  126 (477)
T ss_pred             chHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHH----HCceeeccCCCCchhhHHHhhh
Confidence            344678888888776421  11     222335678888899999999999983    344  44558899999888877


Q ss_pred             HHHHHHHHHhcCCCCCCCeEE---ecCCCcch--HHHHHHhhCCe-----eEEEEecCCccccCHHHHHHHHhh-CceEE
Q 018437          138 KRKWQQKRKEQGKPYDKPNIV---TGANVQVC--WEKFARYFEVE-----LKEVKLEEGYYVMNPVKAVELVDE-NTICV  206 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi---~s~~~h~s--~~~~~~~~G~~-----v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v  206 (356)
                      ..+             .++|.   +|+-.|-+  |..-.+-..+.     -....+|+.+|-+|-|.|++.... +|++|
T Consensus       127 l~P-------------h~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~i  193 (477)
T KOG2467|consen  127 LKP-------------HERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLI  193 (477)
T ss_pred             cCC-------------CCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEE
Confidence            654             23333   45656644  22111211111     122334666799999999987654 67766


Q ss_pred             EEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCee
Q 018437          207 AAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (356)
Q Consensus       207 ~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g  286 (356)
                      +  ++.+..-..-|...+.+||.+.      |.+|++|.|+-.+...  ....+--  .+.+|.++...||.+-+|.| |
T Consensus       194 i--aG~SaY~R~~DYaR~R~Iad~~------gA~Lm~DMAHISgLVA--A~vipsP--Fey~DiVTTTTHKsLRGPRg-~  260 (477)
T KOG2467|consen  194 I--AGTSAYSRLIDYARFRKIADKV------GAYLMADMAHISGLVA--AGVIPSP--FEYCDIVTTTTHKSLRGPRG-A  260 (477)
T ss_pred             E--eccccchhhccHHHHHHHHHhc------CceeehhhhhHHHHHh--cccCCCc--ccccceeeccccccccCCcc-e
Confidence            5  4444445567899999999999      9999999997443331  1111112  34799999999999999998 6


Q ss_pred             EEEEeCCCCCcccc-ccccCCCCCC----CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          287 WVVWRTKDDLPDEL-VFHINYLGSD----QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       287 ~l~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ++++|+.-.-...- .....|-.-.    ..-+.++|-+--..+.++..+|+.-....+++..++-..+|+.|
T Consensus       261 mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakal  333 (477)
T KOG2467|consen  261 MIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKAL  333 (477)
T ss_pred             eEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence            66677642211100 0001111000    01123455554445888889999888777777766666666554

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.19  E-value=4.7e-09  Score=101.88  Aligned_cols=196  Identities=14%  Similarity=0.013  Sum_probs=120.5

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+..........  ......++.+.+++++|.+.       ..++++|++||..|+..++....+.   
T Consensus        54 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~-------~~~~~SGs~A~e~ai~~a~~~~~~~---  121 (401)
T TIGR01885        54 CHPKIVKALTEQAQKLTLSSRAF--YNDVFGEFAEYVTKLFGYDK-------VLPMNTGAEAVETAIKLARKWGYKV---  121 (401)
T ss_pred             CCHHHHHHHHHHHHhcccccccc--CCHHHHHHHHHHHhhcCCCE-------EEEeCccHHHHHHHHHHHHHHhhhh---
Confidence            35788888887765422111111  22334456667888887653       7889999999999999987753211   


Q ss_pred             cCCCCCCCeEEecCCC-cchHHHHHHhhCC------------eeEEEEecCCccccCHHHHHHHHh---hCceEEEEecC
Q 018437          148 QGKPYDKPNIVTGANV-QVCWEKFARYFEV------------ELKEVKLEEGYYVMNPVKAVELVD---ENTICVAAILG  211 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~-h~s~~~~~~~~G~------------~v~~v~~~~~~~~~d~~~L~~~i~---~~~~~v~~~~~  211 (356)
                      +|....+..|+..... |-+....+...|-            ++..+|.      -|+++|+++++   ++..+|++...
T Consensus       122 ~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~avi~E~v  195 (401)
T TIGR01885       122 KGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY------NNLEALEEALEDHGPNVCAFIVEPI  195 (401)
T ss_pred             cCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC------CCHHHHHHHHHhcCCCEEEEEEeCc
Confidence            1111223566665555 4444444443221            1222221      16889998886   35567888888


Q ss_pred             CCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-cCee
Q 018437          212 STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVG  286 (356)
Q Consensus       212 ~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g  286 (356)
                      .+++|.+.|    +++|.++|++|      ++++++|++|.++..  .......+..-...|.++++  |.+.+. +.+|
T Consensus       196 ~~~~G~~~~~~~~l~~l~~l~~~~------~~lli~DEv~~g~g~--~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig  265 (401)
T TIGR01885       196 QGEAGVVVPDDGYLKKVRELCTKH------NVLLIADEIQTGLGR--TGKLLCVDHENVKPDIVLLG--KALSGGVYPVS  265 (401)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--cchhhHHhhcCCCCCEEEee--ccccCCCCCcE
Confidence            888999876    99999999999      999999999865321  11000111111246777765  877654 4577


Q ss_pred             EEEEe
Q 018437          287 WVVWR  291 (356)
Q Consensus       287 ~l~~~  291 (356)
                      +++.+
T Consensus       266 ~v~~~  270 (401)
T TIGR01885       266 AVLAD  270 (401)
T ss_pred             EEEEc
Confidence            77764

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.19  E-value=2.5e-09  Score=102.87  Aligned_cols=192  Identities=16%  Similarity=-0.004  Sum_probs=119.9

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.......  .....+++.++.+++++..+.+       ..+++++|++|+..|+..++..       
T Consensus        46 ~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~-------~~~~~~sG~~a~~~A~~~a~~~-------  109 (377)
T PRK02936         46 CHPTVTKAVQEQLDDIWHVS--NLFTNSLQEEVASLLAENSAGD-------LVFFCNSGAEANEAALKLARKH-------  109 (377)
T ss_pred             CCHHHHHHHHHHHHhccccc--cccCCHHHHHHHHHHHhcCCCC-------EEEEeCCcHHHHHHHHHHHHHh-------
Confidence            45778888888776432211  1223466777777787776543       2789999999999999977642       


Q ss_pred             cCCCCCCCeEEecCCC-cchHHHHHHhhCCeeE---EEEecCC-ccc--cCHHHHHHHHhhCceEEEEecCCCcccccC-
Q 018437          148 QGKPYDKPNIVTGANV-QVCWEKFARYFEVELK---EVKLEEG-YYV--MNPVKAVELVDENTICVAAILGSTLTGEFE-  219 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~-h~s~~~~~~~~G~~v~---~v~~~~~-~~~--~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~-  219 (356)
                      .|    +.+|++.+.. |-+..-.....+....   ..|...+ ...  -|+++|++.+.+++++|++....++.|... 
T Consensus       110 ~g----~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~  185 (377)
T PRK02936        110 TG----KSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIPA  185 (377)
T ss_pred             cC----CCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCccC
Confidence            11    3457666554 4443333333232110   1111110 001  178999999988888999988888877663 


Q ss_pred             ---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          220 ---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       220 ---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                         .+++|.++|++|      ++++++|++|.++..   ... .+.+.  -...|.++  ..|.+.+.+..|+++.+
T Consensus       186 ~~~~l~~l~~l~~~~------~~~lI~DEv~~g~g~---~g~-~~~~~~~~~~~di~t--~sK~l~~G~~ig~v~~~  250 (377)
T PRK02936        186 DPAFLQEVQTLCKKF------GALLIIDEVQTGIGR---TGT-LFAYEQFGLDPDIVT--VAKGLGNGIPVGAMIGK  250 (377)
T ss_pred             CHHHHHHHHHHHHHc------CCEEEEeccccCCCc---Cch-hhHHHhhCCCCcEEE--EcccccCCCccEEEEEc
Confidence               399999999999      999999999976422   111 11111  11235544  67987655567888764

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.18  E-value=6.2e-09  Score=100.73  Aligned_cols=200  Identities=11%  Similarity=-0.081  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      .|.+.+++.+.+........  ....+.+.++.+++.+..+.+       ...++++|+||+..|+..++....+     
T Consensus        54 ~p~v~~a~~~q~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~-------~v~f~~SGseA~e~Aik~ar~~~~~-----  119 (395)
T PRK03715         54 NPGMVEALAAQAEKLINPSP--AFYNEPMAKLAGLLTQHSCFD-------KVFFANSGAEANEGAIKLARKWGRK-----  119 (395)
T ss_pred             CHHHHHHHHHHHHhcccccc--cccCHHHHHHHHHHhhccCCC-------EEEEeCCcHHHHHHHHHHHHHHhhc-----
Confidence            47888888777653221111  122455667777777654433       3789999999999999999864211     


Q ss_pred             CCCCCCCeEEec-CCCcchHHHHHHhhCCeeE---EEEecCC---ccccCHHHHHHHHhhCceEEEEecCCCcccccCC-
Q 018437          149 GKPYDKPNIVTG-ANVQVCWEKFARYFEVELK---EVKLEEG---YYVMNPVKAVELVDENTICVAAILGSTLTGEFED-  220 (356)
Q Consensus       149 g~~~~~~~vi~s-~~~h~s~~~~~~~~G~~v~---~v~~~~~---~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~-  220 (356)
                      +. ..+.+||.. ...|-+..-++...|....   ..|....   .-.-|+++|++.+.+++.+|++.......|.+-| 
T Consensus       120 ~~-~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~  198 (395)
T PRK03715        120 HK-NGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLEPVQGEGGVIPAT  198 (395)
T ss_pred             cC-CCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCC
Confidence            00 112455544 4566665555555443211   1111110   0124789999999878888888887777777766 


Q ss_pred             ---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          221 ---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       221 ---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                         +++|.++|++|      ++++++|+++.|+..  ...-...+..-...|.++++  |.+++....|.++.+++
T Consensus       199 ~~~l~~l~~l~~~~------~~llI~DEv~tG~GR--tG~~~a~~~~gv~PDi~t~g--K~lg~G~p~~av~~~~~  264 (395)
T PRK03715        199 REFMQQLRALTKQH------GLLLIVDEVQTGCGR--TGTLFAYELSGIEPDIMTLG--KGIGGGVPLAALLAKAE  264 (395)
T ss_pred             HHHHHHHHHHHHHc------CCEEEEeccccCCCC--CcchhhHhhcCCCCceeeeh--hhhhCCcceEEEEEccc
Confidence               99999999999      999999999986422  10000001101136777764  87766566788877653

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.15  E-value=9e-09  Score=99.79  Aligned_cols=195  Identities=16%  Similarity=-0.008  Sum_probs=119.5

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.++........+  ......++.+.++++.+.+       ...++++|++||..|++.++.....+   
T Consensus        52 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~la~~L~~~~~~~-------~~~f~~SGseA~e~Alk~ar~~~~~~---  119 (397)
T TIGR03246        52 AHPELVKALIEQADKLWHIGNGY--TNEPVLRLAKKLVDATFAD-------KVFFCNSGAEANEAALKLARRYALDK---  119 (397)
T ss_pred             CCHHHHHHHHHHHHhcccccCcc--CCHHHHHHHHHHHhhCCCC-------EEEEeCCcHHHHHHHHHHHHHHHHhc---
Confidence            35788888887776421111111  1233446666788877654       27899999999999999997653211   


Q ss_pred             cCCCCCCCeEEec-CCCcchHHHHHHhhCCe------------eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          148 QGKPYDKPNIVTG-ANVQVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       148 ~g~~~~~~~vi~s-~~~h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      .+  ..+.+|+.. ...|-+..-+....+..            +..+|.      -|+++|++++.+++++|++...++.
T Consensus       120 ~~--~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~aavi~Epi~~~  191 (397)
T TIGR03246       120 HG--ADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY------NDLAAAKALISDKTCAVIVEPIQGE  191 (397)
T ss_pred             CC--CCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC------CCHHHHHHHhccCeEEEEEecccCC
Confidence            01  113455554 45565544444433321            112221      2789999999888888888866666


Q ss_pred             cccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          215 TGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       215 tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      .|.+    ..+++|.++|++|      |+++++|++|.|+..  ...-.......-..|.++  .-|.+++.+.+|+++.
T Consensus       192 ~G~~~~~~~~l~~l~~lc~~~------g~llI~DEv~tG~Gr--~G~~~a~~~~gv~pDi~t--~~K~lggG~pigav~~  261 (397)
T TIGR03246       192 GGVVPADPAFLKGLRELCDRH------NALLIFDEVQTGVGR--TGELYAYMHYGVTPDILT--SAKALGGGFPIGAMLT  261 (397)
T ss_pred             CCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhcCCc--cccchhhhhcCCCCCEEE--eehhhhCCcceeEEEE
Confidence            6644    4589999999999      999999999865422  100000000011357765  4687765677888887


Q ss_pred             eC
Q 018437          291 RT  292 (356)
Q Consensus       291 ~~  292 (356)
                      ++
T Consensus       262 ~~  263 (397)
T TIGR03246       262 TT  263 (397)
T ss_pred             cH
Confidence            54

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PLN02624 ornithine-delta-aminotransferase

Probab=99.15  E-value=8.6e-09  Score=102.03  Aligned_cols=197  Identities=12%  Similarity=0.006  Sum_probs=120.5

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+++.........  .....++.+.+++++|.+.       ..++++|++|+..|+..++......   
T Consensus        92 ~~p~v~~ai~~ql~~~~~~~~~~~--~~~~~~la~~L~~~~~~~~-------~~f~~SGseA~e~AlklAr~~~~~~---  159 (474)
T PLN02624         92 CHPKIIKALTEQAEKLTLSSRAFY--NDKFPEFAEYLTSMFGYDM-------VLPMNTGAEGVETAIKLARKWGYEK---  159 (474)
T ss_pred             CCHHHHHHHHHHHHhcCCcccccC--CHHHHHHHHHHHhhcCCCe-------EEEeCChHHHHHHHHHHHHHHHHhh---
Confidence            368888888887765322211111  2333456666788777643       7889999999999999887642211   


Q ss_pred             cCCCCCCCeEEecCCC-cchHHHHHHhhC------------CeeEEEEecCCccccCHHHHHHHHh---hCceEEEEecC
Q 018437          148 QGKPYDKPNIVTGANV-QVCWEKFARYFE------------VELKEVKLEEGYYVMNPVKAVELVD---ENTICVAAILG  211 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~-h~s~~~~~~~~G------------~~v~~v~~~~~~~~~d~~~L~~~i~---~~~~~v~~~~~  211 (356)
                      +|.+..+..|+..... |-...-+....+            -++..+|.      -|++.|++.++   +++.+|++..+
T Consensus       160 ~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~iaaiiiEpv  233 (474)
T PLN02624        160 KGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF------GDLDALEKIFEEDGDRIAAFLFEPI  233 (474)
T ss_pred             cCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC------CCHHHHHHHHHhCCCCEEEEEECCc
Confidence            1111112345544433 332222222211            01222322      16889999886   35778999999


Q ss_pred             CCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-cCee
Q 018437          212 STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVG  286 (356)
Q Consensus       212 ~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g  286 (356)
                      ++++|.+.|    +++|.++|++|      |+++++|++|.++..  ...-...+......|.++++  |.++++ +.+|
T Consensus       234 ~~~~G~v~p~~~~L~~l~~lc~~~------gillI~DEv~tG~Gr--tG~~~a~~~~~i~pDiv~ls--K~lggG~~pig  303 (474)
T PLN02624        234 QGEAGVVIPPDGYLKAVRELCSKH------NVLMIADEIQTGLAR--TGKMLACDWEEVRPDVVILG--KALGGGVIPVS  303 (474)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCcCc--CcchhhHHhcCCCCCEEEec--ccccCCCCcce
Confidence            999999876    99999999999      999999999986422  11000111111246777764  876665 5778


Q ss_pred             EEEEeC
Q 018437          287 WVVWRT  292 (356)
Q Consensus       287 ~l~~~~  292 (356)
                      .++.++
T Consensus       304 av~~~~  309 (474)
T PLN02624        304 AVLADK  309 (474)
T ss_pred             eeeecH
Confidence            887653

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.14  E-value=2.1e-09  Score=101.00  Aligned_cols=192  Identities=13%  Similarity=-0.032  Sum_probs=123.1

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +.+|.+.+++.+-.+.-+.....+..  +...++.+.+.++.+ .+       .+.++++|+|||-.|+..+|....   
T Consensus        58 H~hP~iv~al~~Q~~kl~h~sn~~~~--~~~~~la~~L~~~s~~~d-------~vff~NSGaEA~EaAiKlARk~~~---  125 (404)
T COG4992          58 HCHPALVEALKEQAEKLWHVSNLFYN--EPQAELAEKLVELSPFAD-------RVFFCNSGAEANEAALKLARKYTG---  125 (404)
T ss_pred             CCCHHHHHHHHHHHHHhhhcccccCC--hHHHHHHHHHHhhCcccc-------EEEEcCCcHHHHHHHHHHHHHHcC---
Confidence            44688888887655432222112211  223356677888886 33       389999999999999999987621   


Q ss_pred             HhcCCCCCCCeEEecCCC-cchHHHHHHhh-------CC-----eeEEEEecCCccccCHHHHHHHHhhCceEEEEecCC
Q 018437          146 KEQGKPYDKPNIVTGANV-QVCWEKFARYF-------EV-----ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS  212 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~-h~s~~~~~~~~-------G~-----~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (356)
                           ...+.+||.-..+ |--..-++...       +.     .++.||.+      |+++|+++|+++|.+|++---.
T Consensus       126 -----~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn------Di~al~~ai~~~taAvivEPIQ  194 (404)
T COG4992         126 -----DPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN------DIEALEAAIDEDTAAVIVEPIQ  194 (404)
T ss_pred             -----CCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC------CHHHHHHHhccCeEEEEEeccc
Confidence                 1123466655444 32211111111       11     24555543      7899999999999999998888


Q ss_pred             Cccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEE
Q 018437          213 TLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       213 ~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      -.-|++    +-++++.++|++|      |+++|.|++|.|....  ..-......--..|.++  .-|.+++...+|.+
T Consensus       195 GEgGV~~~~~~fl~~lr~lCd~~------g~LLI~DEVQtG~GRT--Gk~fA~e~~gV~PDI~t--laK~LgGG~PigA~  264 (404)
T COG4992         195 GEGGVIPAPPEFLKALRELCDEH------GALLILDEVQTGLGRT--GKLFAYEHYGVEPDILT--LAKALGGGFPIGAM  264 (404)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHh------CeEEEEeccccCCCcc--chHHHHHHhCCCCCEEE--eeccccCCccceee
Confidence            887877    3378899999999      9999999999875331  00000111111346666  45888888999999


Q ss_pred             EEe
Q 018437          289 VWR  291 (356)
Q Consensus       289 ~~~  291 (356)
                      +.+
T Consensus       265 la~  267 (404)
T COG4992         265 LAT  267 (404)
T ss_pred             EEc
Confidence            987

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.13  E-value=1.3e-09  Score=97.40  Aligned_cols=230  Identities=17%  Similarity=0.149  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHH----Hhc-----ccCCCcccCcchHHHHHHHHHHHHHHhC
Q 018437           39 KEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMA----SIN-----KNYVDMDEYPVTTELQNRCVNMIAHLFN  109 (356)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~----~~~-----~~~~~~~~~~~~~~le~~~~~~la~l~g  109 (356)
                      ..++++++.+-+.-.+  ..+|+++.|... |++.++..+    .+.     +...+|+..++...+.+.+..++.+-+|
T Consensus        16 i~~lMdDl~d~Lrt~g--~imLggGNPa~i-Pem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~yg   92 (417)
T COG3977          16 ITQLMDDLNDGLRTPG--AIMLGGGNPARI-PEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYG   92 (417)
T ss_pred             HHHHHHHHHhhccCCC--ceeeCCCCcccC-hhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhC
Confidence            4455666655543333  345666666544 444443332    221     2345677777888999999999999999


Q ss_pred             CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEec-CCCcchHHHHHHhhCCeeE---EEEecC
Q 018437          110 TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG-ANVQVCWEKFARYFEVELK---EVKLEE  185 (356)
Q Consensus       110 ~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s-~~~h~s~~~~~~~~G~~v~---~v~~~~  185 (356)
                      ++-++   -.+..|+|+..+.++.+-.+..+.        .++...+|+.| .|+|..|..+.-.-.+=|.   .++..+
T Consensus        93 wnit~---~NIalTnGSQs~fFYlfNlF~G~~--------sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~  161 (417)
T COG3977          93 WNITA---QNIALTNGSQSAFFYLFNLFAGRR--------SDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLP  161 (417)
T ss_pred             CCCcc---ceeeecCCccchHHHHHHHhcCcc--------CCCcceeEeeccChhhccccccccCccceeeccCCccccc
Confidence            99744   457899998888877766553221        11223356665 5565544433211000011   122221


Q ss_pred             -C--ccccCHHHHHHHHhhCceEEEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC
Q 018437          186 -G--YYVMNPVKAVELVDENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL  259 (356)
Q Consensus       186 -~--~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~  259 (356)
                       .  .+++|.++|.  +.+.+-+|+++-|+||||.+   +.+.+|..+|++|      |++++.|.|||-.+-.....+.
T Consensus       162 ~g~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~------giPliIDnAYg~PFP~iifsd~  233 (417)
T COG3977         162 AGQFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQH------GIPLIIDNAYGVPFPGIIFSDA  233 (417)
T ss_pred             ccceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhc------CCcEEEecccCCCCCceecccc
Confidence             1  3788888875  44778899999999999998   4678888999999      9999999999853321111111


Q ss_pred             cccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          260 EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       260 ~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      ..-+.  .=-..+.|..|.+.-...||+++...
T Consensus       234 ~~~w~--~NiilC~SLSK~GLPG~R~GIiIane  264 (417)
T COG3977         234 TPLWN--ENIILCMSLSKLGLPGSRCGIIIANE  264 (417)
T ss_pred             cccCC--CCEEEEeehhhcCCCCcceeEEEccH
Confidence            11111  12345677889988888999998753

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.08  E-value=9.1e-09  Score=96.65  Aligned_cols=186  Identities=18%  Similarity=0.150  Sum_probs=126.0

Q ss_pred             ChHHHHHHHHHHhcccCC-CcccCc--chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYV-DMDEYP--VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~-~~~~~~--~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      ..+++.+++...++.... .+....  ...++. .+....+.+.|...       +.++...+.|++..+.++..     
T Consensus        39 ~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~-~~~~~~~~~~~aea-------~~ivnnn~aAVll~~~al~~-----  105 (395)
T COG1921          39 YSPEAIEAMKEAMRAPVELETDLKTGKRGARLT-ELAELLCGLTGAEA-------AAIVNNNAAAVLLTLNALAE-----  105 (395)
T ss_pred             CCHHHHHHHHHHhcccceeeeecccchhhHHHH-HHHHHHhcccchhh-------eeeECCcHHHHHHHHhhhcc-----
Confidence            346777777766654211 221111  111221 33334444444433       77888877777776665543     


Q ss_pred             HHhcCCCCCCCeEEecC-----CCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccccc-
Q 018437          145 RKEQGKPYDKPNIVTGA-----NVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF-  218 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~-----~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~-  218 (356)
                               +.+++++-     ..|+++...++..|++++.|...   .+....+++.+|.+++.++.-++.+|. |.. 
T Consensus       106 ---------~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~t---n~t~~~d~~~AIne~ta~llkV~s~~~-~f~~  172 (395)
T COG1921         106 ---------GKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTT---NRTHLKDYELAINENTALLLKVHSSNY-GFTG  172 (395)
T ss_pred             ---------CCeEEEEccccccCCCCChhHHHHHcCCEEEEeccc---CcCCHHHHHHHhccCCeeEEEEeeccc-cccc
Confidence                     23444332     57899999999999998777643   567889999999999998877777765 433 


Q ss_pred             -CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc---CCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          219 -EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR---LPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       219 -~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~---~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                       -+++++.++||++      ++++++|.+.|..+-    .  ..+++   ..|+|.+++|++|.+++|. +|+++-|+
T Consensus       173 ~l~~~~l~~ia~~~------~lpvivD~aSg~~v~----~--e~~l~~~la~GaDLV~~SgdKllgGPq-aGii~GkK  237 (395)
T COG1921         173 MLSEEELVEIAHEK------GLPVIVDLASGALVD----K--EPDLREALALGADLVSFSGDKLLGGPQ-AGIIVGKK  237 (395)
T ss_pred             cccHHHHHHHHHHc------CCCEEEecCCccccc----c--ccchhHHHhcCCCEEEEecchhcCCCc-cceEechH
Confidence             3788899999999      999999999886432    1  12222   4589999999999999988 68887553

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.08  E-value=3.7e-09  Score=98.93  Aligned_cols=229  Identities=14%  Similarity=0.022  Sum_probs=148.6

Q ss_pred             CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc
Q 018437           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV  165 (356)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~  165 (356)
                      +|....|..++...+.......++.+...  ....++|+|.|.++..+++.++++             ++.|++-..++.
T Consensus        95 QYg~s~G~peLl~fik~h~~~~ih~p~~~--~wdiiit~G~t~~l~~~l~~~~N~-------------gd~vlie~~ty~  159 (472)
T KOG0634|consen   95 QYGQSSGIPELLLFIKDHNRPTIHAPPYK--NWDIIITNGNTDGLFKVLRTLINR-------------GDHVLIEEYTYP  159 (472)
T ss_pred             ccccccCcHHHHHHHHHhccccccCCCCC--CceEEEecCCchHHHHHHHHhhcC-------------CCceEEecccch
Confidence            45556677778777766555556666522  245799999999999999999886             689999999999


Q ss_pred             hHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh---------CceEE-EEecCCCcccccCCH---HHHHHHHHHhh
Q 018437          166 CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---------NTICV-AAILGSTLTGEFEDV---KLLHDLLTKKN  232 (356)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---------~~~~v-~~~~~~~~tG~~~~i---~~I~~i~~~~~  232 (356)
                      +-...++.+|+.++.|+.|+  .-+++|.|++.+..         ++.++ .+-.++||||..-.+   ++|.++|++| 
T Consensus       160 ~AL~s~~a~gv~~ipv~md~--~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKy-  236 (472)
T KOG0634|consen  160 SALQSMEALGVKIIPVKMDQ--DGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKY-  236 (472)
T ss_pred             HHHHhccccCceEEeccccC--CCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHc-
Confidence            98888999997777777765  47999999999863         24443 366788999998665   5799999999 


Q ss_pred             hccCCCCcEEEecccccccccccCC-----CCccc-----------ccCCCce--EEEE-cCCcCCCCCcCeeEEEEeCC
Q 018437          233 EETGWDTPIHVDAASGGFIAPFLYP-----DLEWD-----------FRLPLVK--SINV-SGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       233 ~~~~~~~~l~vD~a~~~~~~~~~~~-----~~~~~-----------~~~~~~D--s~~~-~~hK~l~~P~g~g~l~~~~~  293 (356)
                           +++++.|..|...-++-..+     ++.++           +.-...|  .+.. ++.|-+.-....|++-..+ 
T Consensus       237 -----DfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~-  310 (472)
T KOG0634|consen  237 -----DFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNS-  310 (472)
T ss_pred             -----CEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCH-
Confidence                 99999999987543321111     11111           0000011  1111 2456654334566665432 


Q ss_pred             CCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHH
Q 018437          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSL  348 (356)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~  348 (356)
                      ..+.+.       +....  .+..+ +++..-.-+++.|+..|++|+.+.+.+.+
T Consensus       311 ~~l~ri-------l~~ae--~~t~~-pSg~sq~iv~a~l~~wgqeG~~~wi~~l~  355 (472)
T KOG0634|consen  311 LFLKRI-------LDLAE--VATSG-PSGFSQGIVYAMLKRWGQEGFLRWIQHLR  355 (472)
T ss_pred             HHHHHH-------hhhcc--eeecC-cccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122111       11110  11111 33334556788999999999988887754

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.07  E-value=4.3e-08  Score=95.23  Aligned_cols=193  Identities=14%  Similarity=-0.014  Sum_probs=116.6

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.+.......  .......++.+.++++.+.+.       ..++++|++||..|+..++..... +  
T Consensus        57 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~-------~~~~~sGseA~e~a~klar~~~~~-~--  124 (403)
T PRK05093         57 CHPALVKALKEQGEKLWHISNV--FTNEPALRLAKKLIDATFAER-------VFFANSGAEANEAAFKLARRYACD-R--  124 (403)
T ss_pred             CCHHHHHHHHHHHHhcCcccCc--cCCHHHHHHHHHHHhhCCCCE-------EEEeCchHHHHHHHHHHHHHHHhh-c--
Confidence            4578888888777542211111  112223466667777765542       789999999999999988765321 0  


Q ss_pred             cCCCCCCCeEE-ecCCCcchHHHHHHhhC-------C-----eeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          148 QGKPYDKPNIV-TGANVQVCWEKFARYFE-------V-----ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       148 ~g~~~~~~~vi-~s~~~h~s~~~~~~~~G-------~-----~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                       + ...+..|+ +....|-+...+....|       .     +++.+|.      -|++.+++.+.+++++|++. |.++
T Consensus       125 -~-~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~aaiiie-p~~~  195 (403)
T PRK05093        125 -H-GPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF------NDLAAVKAVIDDHTCAVVVE-PIQG  195 (403)
T ss_pred             -C-CCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC------CCHHHHHHHhcCCeEEEEEe-cccC
Confidence             0 01133455 44455655443333211       1     1222221      17899999998888888777 6677


Q ss_pred             cccc-----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEEcCCcCCCCCcCeeEE
Q 018437          215 TGEF-----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       215 tG~~-----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      +|.+     +.+++|.++|++|      ++++++|++|.++..   .... .........|..+  ..|.+++.+.+|++
T Consensus       196 ~gg~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~g~---~g~~~~~~~~~~~pdi~s--~sK~l~~G~rig~v  264 (403)
T PRK05093        196 EGGVIPATPEFLQGLRELCDQH------NALLIFDEVQTGMGR---TGDLFAYMHYGVTPDILT--SAKALGGGFPIGAM  264 (403)
T ss_pred             CCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCC---CccchhhhhcCCCCCEEE--ecccccCCcceEEE
Confidence            6654     2389999999999      999999999986422   1111 0111111245444  46887766779999


Q ss_pred             EEeC
Q 018437          289 VWRT  292 (356)
Q Consensus       289 ~~~~  292 (356)
                      +.++
T Consensus       265 v~~~  268 (403)
T PRK05093        265 LTTA  268 (403)
T ss_pred             EEcH
Confidence            8754

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.04  E-value=3.1e-08  Score=94.62  Aligned_cols=227  Identities=15%  Similarity=-0.020  Sum_probs=133.7

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.+-......+.  .+...++.+.++++.|.+.       ..++++||+|+..|++.++...      
T Consensus        41 ~~p~v~~ai~~ql~~~~~~~~~~~--~~~~~~la~~l~~~~~~~~-------v~~~~SGseA~e~Alklar~~~------  105 (364)
T PRK04013         41 NHPEWVEEMSEQLEKLVVAGPMFE--HEEKEEMLEELSKWVNYEY-------VYMGNSGTEAVEAALKFARLYT------  105 (364)
T ss_pred             CCHHHHHHHHHHHHhcCCccCCcC--CHHHHHHHHHHHhhcCCCE-------EEEeCchHHHHHHHHHHHHHHh------
Confidence            447777888777664221111111  1223345566777776543       7899999999999999987641      


Q ss_pred             cCCCCCCCeEEecCCCcch-HHHHHHhh-------CCe-----eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          148 QGKPYDKPNIVTGANVQVC-WEKFARYF-------EVE-----LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s-~~~~~~~~-------G~~-----v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                       |    +++|+....+|+. ..-+....       +..     +..+|.      -|++.+++.+.+++++|++......
T Consensus       106 -g----r~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~i~~~~aAvivEpi~g~  174 (364)
T PRK04013        106 -G----RKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF------NDVEAAKEAITKETAAVIFEPIQGE  174 (364)
T ss_pred             -C----CCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC------CCHHHHHHHhcCCcEEEEEcCCcCC
Confidence             1    3567766555443 22222211       122     222221      1678899999888888887776665


Q ss_pred             cccc-CC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          215 TGEF-ED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       215 tG~~-~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      -|.+ -|   +++|.++|++|      |++++.|+++.|+ .  ...-......--..|.+++  -|.+++...+|.++.
T Consensus       175 gG~~~~~~~yl~~lr~lc~~~------gillI~DEv~tG~-R--tG~~~a~~~~gv~PDiv~~--gK~lggG~P~~a~~~  243 (364)
T PRK04013        175 GGIVPAKEEFVKTLRDLTEDV------GALLIADEVQSGL-R--TGKFLAIEHYKVEPDIVTM--GKGIGNGVPVSLTLT  243 (364)
T ss_pred             CCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhcC-C--CCchhHHHhcCCCCCEEEe--cccccCCceeEEEEe
Confidence            5554 34   89999999999      9999999998864 2  1110011111123677775  587666567787776


Q ss_pred             eCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHH
Q 018437          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFIS  346 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~  346 (356)
                      +.+ . . .     ..  +   ..|..|  +....++..++|+.+-++++.+..++
T Consensus       244 ~~~-~-~-~-----~~--~---~~T~~g--np~~~aaa~a~l~~i~~~~l~~~~~~  284 (364)
T PRK04013        244 NFD-V-E-R-----GK--H---GSTFGG--NPLACKAVAVTLRILRRERLVEKAGE  284 (364)
T ss_pred             ccc-c-c-C-----CC--c---CCCCCc--CHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            543 1 1 0     00  1   112112  22335666688888877776555544

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.04  E-value=4.8e-08  Score=93.95  Aligned_cols=189  Identities=15%  Similarity=0.013  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      .|.+.+++.+.+......+..  ....++.+    +++.++...    .....++++|++||..|+..++...       
T Consensus        46 ~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~----la~~l~~~~----~~~~~~~~SGseA~~~Al~~ar~~~-------  108 (375)
T PRK04260         46 HPQVQQALQKQAGLIWHSPNL--YLNSLQEE----VAQKLIGDK----DYLAFFCNSGAEANEAAIKIARKAT-------  108 (375)
T ss_pred             CHHHHHHHHHHHHhcCcccCc--cCCHHHHH----HHHHHhcCc----CCEEEEcCccHHHHHHHHHHHHHhc-------
Confidence            577888888877653332221  22334444    454432222    1235789999999999999886531       


Q ss_pred             CCCCCCCeEEec-CCCcchHHHHHHhhCCee---------EEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccccc
Q 018437          149 GKPYDKPNIVTG-ANVQVCWEKFARYFEVEL---------KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF  218 (356)
Q Consensus       149 g~~~~~~~vi~s-~~~h~s~~~~~~~~G~~v---------~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~  218 (356)
                          ++.+|++. ...|-+...++...|.+.         ..++...   ..|+++|++.+.+++.+|++..+++++|.+
T Consensus       109 ----~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~  181 (375)
T PRK04260        109 ----GKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAI---FNDLNSVKALVNKNTAAVMLELVQGESGVL  181 (375)
T ss_pred             ----CCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeC---CCCHHHHHHhcCCCeEEEEECCeECCCCCc
Confidence                13456665 455665545544333221         1111110   238999999988788899999999999988


Q ss_pred             CC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          219 ED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       219 ~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      .+    +++|.++|+++      ++++++|++|.++..   .... .....-...|.+  +..|.+......|+++.++
T Consensus       182 ~~~~~~l~~~~~l~~~~------~~~~i~De~~~g~g~---~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~  249 (375)
T PRK04260        182 PADKDFVKALADYCQET------GILLIVDEVQTGMGR---TGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKS  249 (375)
T ss_pred             CCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc---ccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcH
Confidence            54    89999999999      999999999976422   1111 111111124544  4679876445689998864

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.03  E-value=4.2e-08  Score=95.45  Aligned_cols=198  Identities=14%  Similarity=-0.042  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+.........+  ......++.+.++++++.+       ...++++|+||+..|++.++..... +   
T Consensus        57 ~p~v~~A~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~~~-------~v~~~~sGseA~e~Alk~ar~~~~~-~---  123 (406)
T PRK12381         57 HPALREALNEQASKFWHTGNGY--TNEPVLRLAKKLIDATFAD-------RVFFCNSGAEANEAALKLARKYAHD-R---  123 (406)
T ss_pred             CHHHHHHHHHHHhhcccccCcc--CCHHHHHHHHHHHhhCCCC-------eEEEcCCcHHHHHHHHHHHHHHHhh-c---
Confidence            5788888887775421111111  1223345666788877654       3799999999999999998765321 0   


Q ss_pred             CCCCCCCeEEecCCC-cchHHHHHHhhCCeeE---EEEecCC---ccccCHHHHHHHHhhCceEEEEecCCCccccc---
Q 018437          149 GKPYDKPNIVTGANV-QVCWEKFARYFEVELK---EVKLEEG---YYVMNPVKAVELVDENTICVAAILGSTLTGEF---  218 (356)
Q Consensus       149 g~~~~~~~vi~s~~~-h~s~~~~~~~~G~~v~---~v~~~~~---~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~---  218 (356)
                      +. ..+.+|+..+.. |-...-+....|....   +.|+.++   -...|+++|++.+++++.+|++ -|.+++|.+   
T Consensus       124 ~~-~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavii-EPv~~~gg~~~~  201 (406)
T PRK12381        124 YG-SHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIV-EPIQGEGGVIPA  201 (406)
T ss_pred             CC-CCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEE-eCCcCCCCCcCC
Confidence            10 113456655444 4443333333231100   0111000   0123789999999877777776 477887753   


Q ss_pred             --CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          219 --EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       219 --~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                        +.+++|.++|++|      ++++++|++|.++..   .... .....-...|.++  .-|.+++.+.+|+++.++
T Consensus       202 ~~~~l~~l~~l~~~~------~~llI~DEv~tG~gr---~G~~~~~~~~~v~pDi~t--~sK~l~gG~~ig~~~~~~  267 (406)
T PRK12381        202 DKAFLQGLRELCDRH------NALLIFDEVQTGVGR---TGELYAYMHYGVTPDVLT--TAKALGGGFPIGAMLTTE  267 (406)
T ss_pred             CHHHHHHHHHHHHHc------CCEEEEcchhhCCCC---CcchhhhHhhCCCCCEEE--ehhhhhCCCceEEEEEcH
Confidence              5689999999999      999999999976432   1111 0011111346554  569886667788888754

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.02  E-value=2.1e-08  Score=98.06  Aligned_cols=192  Identities=13%  Similarity=-0.044  Sum_probs=116.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.........+..    .++++.+++.+...      ..+.+++||+||+..|++.++...     
T Consensus        64 h~~p~v~~ai~~q~~~~~~~~~~~~~~----~~lae~l~~~~~~~------~~v~~~~sGseA~e~Alk~ar~~~-----  128 (423)
T TIGR00713        64 HAHPRVVEAVKEALERGTSYGAPTEAE----ILLAKEIISRVPSV------EMVRFVNSGTEATMSAVRLARGYT-----  128 (423)
T ss_pred             CCCHHHHHHHHHHHHhCCcCCCCCHHH----HHHHHHHHHhCCcc------cEEEEeCCHHHHHHHHHHHHHHhh-----
Confidence            456888888888776533222122233    35556677766432      137899999999999999987641     


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHh-h--CCeeEEEEecC--------Cccc---cCHHHHHHHHh---hCceEEEEe
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARY-F--EVELKEVKLEE--------GYYV---MNPVKAVELVD---ENTICVAAI  209 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~-~--G~~v~~v~~~~--------~~~~---~d~~~L~~~i~---~~~~~v~~~  209 (356)
                        |    +++|+...++|..+...+.. .  |......+..+        +...   -|+++|+++++   +++++|++.
T Consensus       129 --g----r~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~e  202 (423)
T TIGR00713       129 --G----RDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVE  202 (423)
T ss_pred             --C----CCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEe
Confidence              1    46788777765553222111 1  11100001000        0001   17899999997   456777775


Q ss_pred             -cCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-ccCCCceEEEEcCCcCCCCCc
Q 018437          210 -LGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVYA  283 (356)
Q Consensus       210 -~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Ds~~~~~hK~l~~P~  283 (356)
                       .++| +|.+.+    +++|.++|++|      ++++++|++|.++...   ...... +.+ ..|.+  ..-|.+.+.+
T Consensus       203 p~~~~-~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~r~g---~~~~~~~~~~-~pDi~--t~sK~l~~G~  269 (423)
T TIGR00713       203 PVAGN-MGVVPPKPEFLAGLRALTEEY------GSLLIFDEVMTGFRVA---LGGAQEYFGV-EPDLT--TLGKIIGGGL  269 (423)
T ss_pred             CCCCC-CCCcCCCHHHHHHHHHHHHHh------CCEEEEEccccccccC---cchhHHHhCC-Ccchh--hhhhhhcCCC
Confidence             5555 688755    78999999999      9999999999775321   000011 111 23543  4678876556


Q ss_pred             CeeEEEEeC
Q 018437          284 GVGWVVWRT  292 (356)
Q Consensus       284 g~g~l~~~~  292 (356)
                      ..|+++.++
T Consensus       270 pig~v~~~~  278 (423)
T TIGR00713       270 PVGAFGGRR  278 (423)
T ss_pred             ceeeeeEHH
Confidence            688888754

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.93  E-value=1.1e-09  Score=101.99  Aligned_cols=162  Identities=17%  Similarity=0.199  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc------chHHHHHH
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ------VCWEKFAR  172 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h------~s~~~~~~  172 (356)
                      .+.+.++.++|++.       ..++++...|+++++.++..              +.+||+|.-.-      +.+...++
T Consensus        51 ~v~~ll~~ltgAea-------A~VvNnnaAAv~L~l~~la~--------------~~EvIvsRGelVeiGgsFRip~vm~  109 (367)
T PF03841_consen   51 HVEELLCELTGAEA-------ALVVNNNAAAVLLALNTLAK--------------GKEVIVSRGELVEIGGSFRIPDVMR  109 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccc-------cccccccccccccccccccc--------------ccccccccccccccccccccccccc
Confidence            45566889999975       56777767777777666543              24677665432      23556667


Q ss_pred             hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcc-----cccCCHHHHHHHHHHhhhccCCCCcEEEeccc
Q 018437          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-----GEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS  247 (356)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t-----G~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~  247 (356)
                      .-|+.++.|-..   .+..+++.+++|+++|.++.-.+++|..     +. -+++++.+++++|      ++++++|.+.
T Consensus       110 ~sGa~lvEVGtt---N~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~-~~~~el~~la~~~------~lp~i~Dlgs  179 (367)
T PF03841_consen  110 QSGARLVEVGTT---NRTHLSDYEKAITENTAALLKVHTSNFRIQGFTGE-VSLEELAELAKEH------GLPVIVDLGS  179 (367)
T ss_dssp             -------------------------------------------------------HHHHHHHHH------T--EEEE-TT
T ss_pred             cccccccccccc---ccccccccccccccccccccccccccccccccccc-ccHHHHHHHHhhc------CCcEEEECCC
Confidence            778888777764   3667888999999999999989988883     33 3799999999999      9999999988


Q ss_pred             ccccc--cc-cCCCCc-ccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          248 GGFIA--PF-LYPDLE-WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       248 ~~~~~--~~-~~~~~~-~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      |...-  ++ +.+++. ...-..|+|.+++|+.|.+++|. +|+++-|+
T Consensus       180 G~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gkk  227 (367)
T PF03841_consen  180 GLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGKK  227 (367)
T ss_dssp             HHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S--EEEEEEH
T ss_pred             CCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeCH
Confidence            65431  01 111111 11224689999999999999887 69998764

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=98.92  E-value=6.1e-08  Score=89.65  Aligned_cols=169  Identities=20%  Similarity=0.151  Sum_probs=102.4

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEE-ecCCCcchHHHH
Q 018437           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIV-TGANVQVCWEKF  170 (356)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi-~s~~~h~s~~~~  170 (356)
                      +...+|+-    +|+.||.+..   -...-+ .+||.|+..++.+..++             +++++ ++..-|-..++.
T Consensus        55 GRd~le~i----yA~vfgaE~A---LVRpq~-vSGTHAi~~~Lfg~Lrp-------------GD~ll~~tG~PYDTL~~V  113 (403)
T PF06838_consen   55 GRDKLERI----YADVFGAEDA---LVRPQF-VSGTHAIALALFGVLRP-------------GDELLSITGKPYDTLEEV  113 (403)
T ss_dssp             HHHHHHHH----HHHHCT-SEE---EEETTS--SHHHHHHHHHHHH--T-------------T-EEEESSSS--CCHHHH
T ss_pred             cHHHHHHH----HHHHhCchhh---hhcccc-cchHHHHHHHHHhcCCC-------------CCeEEEcCCCchhhHHHH
Confidence            55555544    8999999851   011112 26799999999998775             46655 344334445544


Q ss_pred             HH----------hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCC----CcccccCCHHHHHHHHHHhhhccC
Q 018437          171 AR----------YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS----TLTGEFEDVKLLHDLLTKKNEETG  236 (356)
Q Consensus       171 ~~----------~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~----~~tG~~~~i~~I~~i~~~~~~~~~  236 (356)
                      ..          -.|+....||+.++ +.+|.+.+++++++++++|.+.-..    -++=++++|+++.+++|+.+.   
T Consensus       114 IG~~g~~~GSL~e~Gi~Y~~v~L~~d-g~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p---  189 (403)
T PF06838_consen  114 IGIRGNGPGSLKEFGIKYREVPLTED-GTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINP---  189 (403)
T ss_dssp             HTSSSSSSSSTGGGT-EEEE--B-TT-SSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-T---
T ss_pred             hCCCCCCCCChHHhCceeEEEeecCC-CCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCC---
Confidence            42          34677889999875 8999999999999999999876443    333345778888888888754   


Q ss_pred             CCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCC---CcCeeEEEEeCCCC
Q 018437          237 WDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV---YAGVGWVVWRTKDD  295 (356)
Q Consensus       237 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~---P~g~g~l~~~~~~~  295 (356)
                       ++++.||.|||.|+-    ...+.++   |+|.+.-|.=|..++   |.| |.+. -++++
T Consensus       190 -~~iifVDNCYGEFvE----~~EP~~v---GADl~aGSLIKNpGGgiAptG-GYIa-Gr~~l  241 (403)
T PF06838_consen  190 -DVIIFVDNCYGEFVE----TQEPTEV---GADLMAGSLIKNPGGGIAPTG-GYIA-GRKDL  241 (403)
T ss_dssp             -TSEEEEE-TTTTTTS----SS-GGGG---T-SEEEEETTSGGGTTT-SS--EEEE-ESHHH
T ss_pred             -CeEEEEeCCcceecc----ccCcccc---chhheeccceeCCCCCccCcC-CEEe-chHHH
Confidence             899999999998755    2223332   899999999998443   333 5554 44433

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.90  E-value=7e-08  Score=94.44  Aligned_cols=189  Identities=15%  Similarity=0.015  Sum_probs=114.6

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.....+.    ....+.++.+++++++.. .     ....++++|++|+..|+..++...     
T Consensus        66 h~~p~i~~a~~~~~~~~~~~~~----~~~~~~~la~~L~~~~~~-~-----~~v~~~~sGseA~e~Aik~a~~~~-----  130 (426)
T PRK00062         66 HAHPEVVEAVIEAAEKGLSFGA----PTELEVELAELVIELVPS-I-----EMVRMVNSGTEATMSAIRLARGYT-----  130 (426)
T ss_pred             CCCHHHHHHHHHHHHhCCcCCC----CCHHHHHHHHHHHHhCCC-C-----CEEEEecCHHHHHHHHHHHHHHHh-----
Confidence            3457888888877765322111    123444677777777531 1     137899999999999999987641     


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhh--------C-----CeeEE-----EEecCCccccCHHHHHHHHhh---CceE
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYF--------E-----VELKE-----VKLEEGYYVMNPVKAVELVDE---NTIC  205 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~--------G-----~~v~~-----v~~~~~~~~~d~~~L~~~i~~---~~~~  205 (356)
                        |    +.+||....+|+.+...+...        +     ...+.     +.+.    .-|+++|++.+.+   ++.+
T Consensus       131 --g----~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~i~~~~~~~aa  200 (426)
T PRK00062        131 --G----RDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP----YNDLEAVEELFEEYGDEIAA  200 (426)
T ss_pred             --C----CCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC----CCCHHHHHHHHHhCCCcEEE
Confidence              1    356777666655543222111        1     00111     1111    1278899988863   5667


Q ss_pred             EEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-ccCCCceEEEEcCCcCCC
Q 018437          206 VAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGL  280 (356)
Q Consensus       206 v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Ds~~~~~hK~l~  280 (356)
                      |++.......|.+-+    +++|.++|++|      ++++++|++|.++-.   ......+ +.+ ..|.+  ...|.++
T Consensus       201 iivEpv~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~G~r~---g~~~~~~~~~~-~pDi~--~~gK~l~  268 (426)
T PRK00062        201 VIVEPVAGNMGVVPPKPGFLEGLRELCDEH------GALLIFDEVMTGFRV---ALGGAQGYYGV-TPDLT--TLGKIIG  268 (426)
T ss_pred             EEEeCCcCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeechhcccc---CCccHHHHhCC-CcchH--hhhhHhh
Confidence            777756666788877    99999999999      999999999986522   1100011 111 23433  4568876


Q ss_pred             CCcCeeEEEEeC
Q 018437          281 VYAGVGWVVWRT  292 (356)
Q Consensus       281 ~P~g~g~l~~~~  292 (356)
                      +.+..|+++.++
T Consensus       269 ~G~p~ga~~~~~  280 (426)
T PRK00062        269 GGLPVGAFGGRR  280 (426)
T ss_pred             CCCcceeeeEHH
Confidence            656677776643

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=98.88  E-value=3.8e-07  Score=89.08  Aligned_cols=198  Identities=12%  Similarity=-0.044  Sum_probs=118.1

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.... ........+.+.++.+.+.++.....    .....++++||||+..|++.++..      
T Consensus        56 h~~p~v~~ai~~ql~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~----~~~~~f~~sGseA~e~AlklAr~~------  124 (421)
T PRK09792         56 HRHPDLVAAVEQQLQQFTH-TAYQIVPYESYVTLAEKINALAPVSG----QAKTAFFTTGAEAVENAVKIARAH------  124 (421)
T ss_pred             CCCHHHHHHHHHHHHhccC-cccCccCCHHHHHHHHHHHHhCCCCC----CceEEEeCChHHHHHHHHHHHHHh------
Confidence            3457888888877764221 11111122334466666777754221    124788999999999999999753      


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhCC-------------eeEEEEecCCcccc----CHHHHHHHHh-----hCc
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV-------------ELKEVKLEEGYYVM----NPVKAVELVD-----ENT  203 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G~-------------~v~~v~~~~~~~~~----d~~~L~~~i~-----~~~  203 (356)
                       .|    +++|+.-.. .|-...-+....|.             .+..+|...+...+    +++.+++.++     ++.
T Consensus       125 -tg----r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~i  199 (421)
T PRK09792        125 -TG----RPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQV  199 (421)
T ss_pred             -cC----CCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCce
Confidence             11    345665444 44332222222111             24445553211112    3478888875     346


Q ss_pred             eEEEEecCCCcccccC-C---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEcCCc
Q 018437          204 ICVAAILGSTLTGEFE-D---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHK  277 (356)
Q Consensus       204 ~~v~~~~~~~~tG~~~-~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK  277 (356)
                      ++|++.-..+++|... |   +++|.++|++|      ++++++|+++.++..  . .. .+.+.  -...|.++  .-|
T Consensus       200 aavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEv~tg~gr--~-G~-~~a~~~~~~~pDi~t--~gK  267 (421)
T PRK09792        200 AAIIFEPVQGEGGFNVAPKELVAAIRRLCDEH------GIVMIADEVQSGFAR--T-GK-LFAMDHYADKPDLMT--MAK  267 (421)
T ss_pred             EEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCC--C-Cc-hhHHHhcCCCCcEEE--eeh
Confidence            7788887788888653 5   89999999999      999999999987532  1 11 11111  12356544  569


Q ss_pred             CCCCCcCeeEEEEeC
Q 018437          278 YGLVYAGVGWVVWRT  292 (356)
Q Consensus       278 ~l~~P~g~g~l~~~~  292 (356)
                      .+.+.+..|+++.++
T Consensus       268 ~l~~G~pigav~~~~  282 (421)
T PRK09792        268 SLAGGMPLSGVVGNA  282 (421)
T ss_pred             hhcCCCceEEEEEcH
Confidence            887767889988754

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=98.86  E-value=4.4e-07  Score=90.33  Aligned_cols=205  Identities=14%  Similarity=0.005  Sum_probs=114.8

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.............+.+.++.+.+.+++.-..    .....++++|+||+..|+..++.....   
T Consensus       105 h~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~----~~~v~f~~SGsEA~e~AlKlAr~~~~~---  177 (504)
T PLN02760        105 GSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARK----MGKVFFTNSGSEANDTQVKLVWYYNNA---  177 (504)
T ss_pred             CCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCC----CCEEEEeCChHHHHHHHHHHHHHHHHh---
Confidence            3458888888888765322211111223444566666777643211    123688999999999999999865321   


Q ss_pred             hcCCCCCCCeEE-ecCCCcchHHHHHHhhCCe------------eEEEEecCCccc-------------cCHHHHHHHHh
Q 018437          147 EQGKPYDKPNIV-TGANVQVCWEKFARYFEVE------------LKEVKLEEGYYV-------------MNPVKAVELVD  200 (356)
Q Consensus       147 ~~g~~~~~~~vi-~s~~~h~s~~~~~~~~G~~------------v~~v~~~~~~~~-------------~d~~~L~~~i~  200 (356)
                       .|... +.+|| .....|-+..-++...|..            +..++.+. .++             ...++|++.+.
T Consensus       178 -~g~~~-r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~le~~l~  254 (504)
T PLN02760        178 -LGRPN-KKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH-YWRFHLPGETEEEFSTRLADNLENLIL  254 (504)
T ss_pred             -cCCCC-CcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCc-ccccCCCCCcHHHHHHHHHHHHHHHHH
Confidence             12111 34454 4455666654444433321            22333211 011             11245777664


Q ss_pred             ----hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccc-cccCCCCcccccCCCceEE
Q 018437          201 ----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDLEWDFRLPLVKSI  271 (356)
Q Consensus       201 ----~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~~~~~Ds~  271 (356)
                          +++.+|++--....-|.+.|    +++|.++|++|      |+++|+|+++.|+.. .-......+.+   ..|.+
T Consensus       255 ~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~------g~lLI~DEV~TGfGRtG~~~a~e~~gv---~PDiv  325 (504)
T PLN02760        255 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKY------DILFIADEVICAFGRLGTMFGCDKYNI---KPDLV  325 (504)
T ss_pred             hcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEecchhhCCcccchhhHHHhcCC---CCcEE
Confidence                23556666555555577777    99999999999      999999999965422 10000001111   36766


Q ss_pred             EEcCCcCCCCCc-CeeEEEEeC
Q 018437          272 NVSGHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       272 ~~~~hK~l~~P~-g~g~l~~~~  292 (356)
                      ++  -|.+++.+ .+|.++.++
T Consensus       326 tl--gK~lggG~~PigAv~~~~  345 (504)
T PLN02760        326 SL--AKALSSAYMPIGAVLVSP  345 (504)
T ss_pred             Ee--cccccCCccccceEeecH
Confidence            64  58776543 456677664

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.86  E-value=6.3e-07  Score=87.68  Aligned_cols=204  Identities=10%  Similarity=-0.036  Sum_probs=116.1

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++........ ....+.+.++.+.+.+++.-..     ....++++|+||+..|++.+|..+..+  
T Consensus        58 h~~p~v~~ai~~q~~~~~~~~~~-~~~~~~~~~la~~l~~~~p~~~-----~~v~f~~sGseA~e~A~klar~~~~~~--  129 (423)
T PRK05964         58 HNHPYIDQAIREQLDRLDHVIFA-GFTHEPAERLAQRLVALTPGGL-----DHVFFSDSGSVAVEVALKMALQYWRNR--  129 (423)
T ss_pred             CCCHHHHHHHHHHHhhCCCcccc-ccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHhc--
Confidence            34578888888777642211110 0112344467777888763211     247899999999999999998753221  


Q ss_pred             hcCCCCCCCeEEecCCC-cchHHHHHHhhC------------CeeEEEEecCCc-cccCHHHHHHHHhh---CceEEEEe
Q 018437          147 EQGKPYDKPNIVTGANV-QVCWEKFARYFE------------VELKEVKLEEGY-YVMNPVKAVELVDE---NTICVAAI  209 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~-h~s~~~~~~~~G------------~~v~~v~~~~~~-~~~d~~~L~~~i~~---~~~~v~~~  209 (356)
                        |. ..+.+|+.-..+ |-...-+....+            ..+..++...++ ...++++|++.+.+   +..+|++.
T Consensus       130 --~~-~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~E  206 (423)
T PRK05964        130 --GE-PGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVE  206 (423)
T ss_pred             --CC-CCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence              11 113456654444 432222222111            123445543211 12237888888853   44455554


Q ss_pred             c-CCCcccccC----CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEEcCCcCCCCC-
Q 018437          210 L-GSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKYGLVY-  282 (356)
Q Consensus       210 ~-~~~~tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P-  282 (356)
                      - .....|..-    .+++|.++|++|      |+++++|+++.++...   ... ..+..--..|.++++  |++.++ 
T Consensus       207 p~i~~~gG~~~~~~~~l~~l~~lc~~~------g~llI~DEv~tg~gr~---G~~~a~~~~~v~pDi~~~~--K~l~gG~  275 (423)
T PRK05964        207 PLVQGAGGMLFYDPRYLAELRRICDRH------GVLLIFDEIATGFGRT---GTLFACEQAGVSPDIMCLS--KGLTGGY  275 (423)
T ss_pred             cccccCCCcccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCcC---cchhHHHhcCCCCCeeeee--hhhhcCc
Confidence            3 255556553    489999999999      9999999999764321   100 011111145766654  998776 


Q ss_pred             cCeeEEEEeC
Q 018437          283 AGVGWVVWRT  292 (356)
Q Consensus       283 ~g~g~l~~~~  292 (356)
                      .++|.++.++
T Consensus       276 ~p~~av~~~~  285 (423)
T PRK05964        276 LPLAATLCTA  285 (423)
T ss_pred             ccceEEEEcH
Confidence            5778877653

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=98.85  E-value=5.7e-07  Score=87.45  Aligned_cols=202  Identities=11%  Similarity=-0.047  Sum_probs=116.3

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.-......  ...+...++.+.+.++.+..      ....++++|+||+..|++.++.....   
T Consensus        56 h~~p~v~~ai~~q~~~~~~~~~~--~~~~~~~~la~~L~~~~~~~------~~v~f~~sGseA~e~AlklAr~~~~~---  124 (408)
T PRK04612         56 HNDPDLVAALTEQAGKLWHTSNV--FYSAPPLKLAEELVTASRFA------EKVFLCNSGTEANEAAIKLVRKWASS---  124 (408)
T ss_pred             CCCHHHHHHHHHHHHhccccccc--cCCHHHHHHHHHHHhhCCCC------CEEEEcCchHHHHHHHHHHHHHHHHh---
Confidence            34578888888776542221111  11223345666677665321      24789999999999999999875421   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhCCeeEE---EEecCC-c--cccCHHHHHHHHhhCceEEEEecCCCcccccC
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEVELKE---VKLEEG-Y--YVMNPVKAVELVDENTICVAAILGSTLTGEFE  219 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G~~v~~---v~~~~~-~--~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~  219 (356)
                       .|.+.++.+|+.-.. .|-...-+....|-....   -|...+ .  -.-|++.|++++.++..+.++.-|.+.+|.+.
T Consensus       125 -~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~~~~gg~~  203 (408)
T PRK04612        125 -QGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVM  203 (408)
T ss_pred             -hCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECCccCCCCCc
Confidence             121112345665444 444333333322211100   011100 0  01278999999876566666777777777652


Q ss_pred             C-----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccC--CCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          220 D-----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL--PLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       220 ~-----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +     +++|.++|++|      ++++++|++|.++...   .. .+....  ...|.++  .-|.+++.+.+|+++.++
T Consensus       204 ~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr~---G~-~~a~~~~~~~pdi~t--~~K~l~~G~piga~~~~~  271 (408)
T PRK04612        204 PAAPGFLARVRALCDQH------DALLVLDEIQCGMGRT---GT-LFAHWQEQVTPDIVT--LAKALGGGFPIGAMLAGP  271 (408)
T ss_pred             CCCHHHHHHHHHHHHHc------CCEEEEeccccCCCcC---Cc-hhhhhhcCCCCCEEE--EcchhcCCCceEEEEECH
Confidence            2     88999999999      9999999999864321   11 011111  1245555  468876656788887754

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=98.83  E-value=9.6e-07  Score=86.75  Aligned_cols=198  Identities=11%  Similarity=-0.108  Sum_probs=117.3

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+......... ....+.+.++.+.+.++++...     ....++++||||+..|++.++...     
T Consensus        57 h~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~la~~L~~~~p~~~-----~~v~f~~sGsEAve~AlklAr~~t-----  125 (443)
T PRK08360         57 HNNPRVVKAIKEQTDKLIHYTPI-YGFPVEPLLLAEKLIEIAPGDN-----PKVSFGLSGSDANDGAIKFARAYT-----  125 (443)
T ss_pred             CCCHHHHHHHHHHHHhccCcccc-ccCcHHHHHHHHHHHHhCCCCC-----CEEEEcCCHHHHHHHHHHHHHHhc-----
Confidence            34578888888777643222111 1112344466777888765432     247899999999999999987641     


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhhCC------------eeEEEEecCC-c--cc--------cCHHHHHHHHh--
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFEV------------ELKEVKLEEG-Y--YV--------MNPVKAVELVD--  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~G~------------~v~~v~~~~~-~--~~--------~d~~~L~~~i~--  200 (356)
                        |    +.+|+.-. ..|-...-+....|.            ++..+|.... .  +.        -+++.+++.+.  
T Consensus       126 --g----r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (443)
T PRK08360        126 --K----RRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGE  199 (443)
T ss_pred             --C----CCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhc
Confidence              1    34555543 334332222222221            2344544321 0  10        23455666664  


Q ss_pred             ---hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-cccCCCceEEE
Q 018437          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSIN  272 (356)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Ds~~  272 (356)
                         +++++|++.-..+++|.+-+    +++|.++|++|      |+++++|++|.++..  ...-... .+. ...|.++
T Consensus       200 ~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~gr--~G~~~a~~~~~-~~pDiit  270 (443)
T PRK08360        200 VYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEH------GILLVVDEVQSGLGR--TGKWFAIEHFG-VEPDIIT  270 (443)
T ss_pred             cCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CccchhhhhcC-CCCCEEE
Confidence               35777877766688898744    89999999999      999999999987432  1110001 111 1246665


Q ss_pred             EcCCcCCCCCcCeeEEEEeC
Q 018437          273 VSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       273 ~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +  .|.+.+.+..|+++.++
T Consensus       271 l--sK~l~~G~pigav~~~~  288 (443)
T PRK08360        271 L--GKPLGGGLPISATIGRA  288 (443)
T ss_pred             e--cccccCCceeEEEEEcH
Confidence            4  78877656788888753

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=98.83  E-value=8.2e-07  Score=87.20  Aligned_cols=198  Identities=13%  Similarity=-0.054  Sum_probs=114.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+...... .........+.++.+.+.+++.-+.    .....++++||||+..|++.++..      
T Consensus        70 h~~p~v~~Ai~~ql~~~~~~-~~~~~~~~~~~~lAe~L~~~~p~~~----~~~v~f~~SGsEA~e~AlklAr~~------  138 (441)
T PRK05769         70 HAHPKVVKAVKEQAEKFLHY-SLTDFYYEPAVELAERLVEIAPGGF----EKKVFFTNSGTESNEAAIKIARYH------  138 (441)
T ss_pred             CCCHHHHHHHHHHHHhccCc-cCcccCCHHHHHHHHHHHHhCCCCC----CCEEEECCchHHHHHHHHHHHHHH------
Confidence            34578888888777542211 1111112345567777888764211    124789999999999999999864      


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhC-------------CeeEEEEecCCccc-------------cCHHHHHHHH
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLEEGYYV-------------MNPVKAVELV  199 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G-------------~~v~~v~~~~~~~~-------------~d~~~L~~~i  199 (356)
                       .|    +.+|+.-.. .|-...-++...|             -++..+|.... ++             -+++.+++.+
T Consensus       139 -tg----r~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~~  212 (441)
T PRK05769        139 -TG----RKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNP-YRNPWGIENPEECGNAVLDFIEDYL  212 (441)
T ss_pred             -hC----CCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCcc-ccccccCCchHHHHHHHHHHHHHHH
Confidence             11    355665443 4433322222221             12344444210 11             1234466523


Q ss_pred             -h-----hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCC
Q 018437          200 -D-----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPL  267 (356)
Q Consensus       200 -~-----~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~  267 (356)
                       +     +++.+|++-......|.+.|    +++|.++|++|      |+++++|+++.++...   .. -+.+.  -..
T Consensus       213 ~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~------g~lli~DEv~tG~gr~---G~-~~a~~~~gv~  282 (441)
T PRK05769        213 FKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKY------GILLIDDEVQTGMGRT---GK-MFAIEHFGVE  282 (441)
T ss_pred             HhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhCCCcc---cc-eehhhccCCC
Confidence             2     24566666666666677777    99999999999      9999999999864221   10 01111  012


Q ss_pred             ceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          268 VKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       268 ~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      .|.++++  |.+++.+..|.++.+++
T Consensus       283 pDivt~~--K~l~~G~p~gav~~~~~  306 (441)
T PRK05769        283 PDIITLA--KAIAGGLPLGAVIGRAE  306 (441)
T ss_pred             CCEEEEc--ccccCCcccEEEEEehh
Confidence            4777754  77666577888877643

>PRK06541 hypothetical protein; Provisional

Probab=98.82  E-value=8.6e-07  Score=87.47  Aligned_cols=205  Identities=13%  Similarity=-0.026  Sum_probs=115.5

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++...... ......+...++.+.+.+++..+.     ....++++|+||+..|++.++..+..   
T Consensus        68 h~~p~v~~Av~~q~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~-----~~v~f~~sGseAve~AlklAr~~~~~---  138 (460)
T PRK06541         68 HGRAELAEAAAKQAGTLAFFP-LWSYAHPPAIELAERLAALAPGDL-----NRVFFTTGGSEAVESAWKLAKQYFKL---  138 (460)
T ss_pred             CCCHHHHHHHHHHHhhCcCcc-ccccCCHHHHHHHHHHHHhCCCCc-----CEEEEcCCcHHHHHHHHHHHHHHHHh---
Confidence            345788888887776432111 111122334456666777754221     24789999999999999999875321   


Q ss_pred             hcCCCCCCCeEEec-CCCcchHHHHHHhhC------------CeeEEEEecCCccc-----cC--------HHHHHHHHh
Q 018437          147 EQGKPYDKPNIVTG-ANVQVCWEKFARYFE------------VELKEVKLEEGYYV-----MN--------PVKAVELVD  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s-~~~h~s~~~~~~~~G------------~~v~~v~~~~~~~~-----~d--------~~~L~~~i~  200 (356)
                       .|.+ .+.+|+.- ...|-...-+....|            .++..+|.... ++     -|        ++.+++.+.
T Consensus       139 -~g~~-~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~  215 (460)
T PRK06541        139 -TGKP-GKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNF-YRAPELGDDPEAFGRWAADRIEEAIE  215 (460)
T ss_pred             -cCCC-CccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCcc-ccccccCCCHHHHHHHHHHHHHHHHH
Confidence             1111 13455543 344443332222211            12344443210 11     12        367788775


Q ss_pred             h----CceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEE
Q 018437          201 E----NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSIN  272 (356)
Q Consensus       201 ~----~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~  272 (356)
                      .    ++.+|++.-..+..|.+.+    +++|.++|+++      |+++++|+++.++..  ..........-...|.++
T Consensus       216 ~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~------g~llI~DEV~tGfGR--~G~~~a~~~~gv~PDivt  287 (460)
T PRK06541        216 FEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRY------DVLLVSDEVICAFGR--LGEMFGCERFGYVPDIIT  287 (460)
T ss_pred             hcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--CchhhhhhhcCCCCCEEE
Confidence            2    3445554444777788877    99999999999      999999999955422  110000110011357666


Q ss_pred             EcCCcCCCCCc-CeeEEEEeCC
Q 018437          273 VSGHKYGLVYA-GVGWVVWRTK  293 (356)
Q Consensus       273 ~~~hK~l~~P~-g~g~l~~~~~  293 (356)
                        .-|.+++.+ ..|.++.+++
T Consensus       288 --~gK~l~~G~~pigav~~~~~  307 (460)
T PRK06541        288 --CAKGITSGYSPLGAMIASDR  307 (460)
T ss_pred             --ecccccCCccceeEEEEcHH
Confidence              468776654 5788877643

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=98.82  E-value=5.3e-07  Score=88.45  Aligned_cols=197  Identities=12%  Similarity=-0.058  Sum_probs=116.1

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++......... ...+.+.++.+.++++++-..     ....++++|+||+..|++.++...     
T Consensus        59 h~~p~v~~a~~~q~~~~~~~~~~~-~~~~~~~~la~~L~~~~~~~~-----~~v~f~~SGseA~e~AlklAr~~t-----  127 (433)
T PRK08117         59 HRHPKVVQAIKEQADKLMHGPSGV-IYYESILKLAEELAEITPGGL-----DCFFFSNSGAEAIEGALKLAKHVT-----  127 (433)
T ss_pred             CCCHHHHHHHHHHHHhccCccccc-cCCHHHHHHHHHHHHhCCCCC-----CEEEEeCcHHHHHHHHHHHHHHhc-----
Confidence            345788888887776422211111 122344566677888763211     247899999999999999887641     


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHHhhC-------------CeeEEEEecCCccc------------cCHHHHHHHHh
Q 018437          147 EQGKPYDKPNIVT-GANVQVCWEKFARYFE-------------VELKEVKLEEGYYV------------MNPVKAVELVD  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~-s~~~h~s~~~~~~~~G-------------~~v~~v~~~~~~~~------------~d~~~L~~~i~  200 (356)
                        |    +.+|+. ....|-+..-+....+             -++..+|.... ++            -|+++|++.++
T Consensus       128 --g----r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  200 (433)
T PRK08117        128 --K----RPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYC-DRCPKGEDPEVCFLECLRDLESLFK  200 (433)
T ss_pred             --C----CCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCcc-ccccccCchhHHHHHHHHHHHHHHH
Confidence              1    345554 4445554333322211             12344554321 11            15566777764


Q ss_pred             -----hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-cccCCCceE
Q 018437          201 -----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKS  270 (356)
Q Consensus       201 -----~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Ds  270 (356)
                           +++.+|++--.....|.+.|    +++|.++|++|      |+++++|++|.++...  ..-... .+.+ ..|.
T Consensus       201 ~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEv~tG~gr~--G~~~~~~~~gv-~pDi  271 (433)
T PRK08117        201 HQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRH------GILLIFDEVQTGFGRT--GEWFAAQTFGV-VPDI  271 (433)
T ss_pred             hccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHc------CCEEEEecchhccCcc--ccchhHhhcCC-CCCE
Confidence                 24566776666666677777    99999999999      9999999999874221  000000 1111 2455


Q ss_pred             EEEcCCcCCCCCcCeeEEEEeC
Q 018437          271 INVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       271 ~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +  +.-|.+++...+|+++.++
T Consensus       272 ~--t~sK~lg~G~pigav~~~~  291 (433)
T PRK08117        272 M--TIAKGIASGLPLSAVVASK  291 (433)
T ss_pred             e--ehhhhccCCCcceeEEEcH
Confidence            4  4679877656688887764

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=98.81  E-value=3.4e-07  Score=87.15  Aligned_cols=188  Identities=12%  Similarity=-0.032  Sum_probs=125.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +-+|.|.+++.+.+......-    .-.++|-++.+.+.++++.-+      .+-++++||||++.|++.+|..-     
T Consensus        69 H~~p~V~~Av~~~l~~G~~fg----~Pte~Ei~~Aell~~~~p~~e------~vrfvnSGTEAtmsAiRlARa~T-----  133 (432)
T COG0001          69 HAHPAVVEAVQEQLERGLSFG----APTELEVELAELLIERVPSIE------KVRFVNSGTEATMSAIRLARAYT-----  133 (432)
T ss_pred             CCCHHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHhcCccc------EEEEecchhHHHHHHHHHHHHhh-----
Confidence            345789999988886543221    224567778888999876621      37799999999999999998751     


Q ss_pred             hcCCCCCCCeEE-ecCCCcchHHHHHHhhC-------------Ce------eEEEEecCCccccCHHHHHHHHhh---Cc
Q 018437          147 EQGKPYDKPNIV-TGANVQVCWEKFARYFE-------------VE------LKEVKLEEGYYVMNPVKAVELVDE---NT  203 (356)
Q Consensus       147 ~~g~~~~~~~vi-~s~~~h~s~~~~~~~~G-------------~~------v~~v~~~~~~~~~d~~~L~~~i~~---~~  203 (356)
                            ++++|+ +....|-.......-.|             +.      ++.+|.+      |+++|++++.+   +.
T Consensus       134 ------gR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN------D~~al~~~~~~~g~~I  201 (432)
T COG0001         134 ------GRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN------DLEALEEAFEEYGDDI  201 (432)
T ss_pred             ------CCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC------CHHHHHHHHHHcCCcE
Confidence                  145555 45555655444443322             11      3334432      78999999976   46


Q ss_pred             eEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC
Q 018437          204 ICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (356)
Q Consensus       204 ~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l  279 (356)
                      .+|++--.-...|.+-|    ++++.++|+++      |++||.|++..++-.++-.....+.+   ..|..+  .-|.+
T Consensus       202 AaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~------G~lLI~DEViTGFR~~~gGaq~~~gi---~PDltt--lGKiI  270 (432)
T COG0001         202 AAVIVEPVAGNMGVVPPEPGFLEGLRELTEEH------GALLIFDEVITGFRVALGGAQGYYGV---EPDLTT--LGKII  270 (432)
T ss_pred             EEEEeccccCCCCCCCCCHHHHHHHHHHHHHc------CcEEEEecchhhcccCCcccccccCc---Ccchhh--hhhhh
Confidence            67777776777788744    67899999999      99999999987754432111111111   245554  56998


Q ss_pred             CCCcCeeEEEEeC
Q 018437          280 LVYAGVGWVVWRT  292 (356)
Q Consensus       280 ~~P~g~g~l~~~~  292 (356)
                      ++...+|++--|+
T Consensus       271 GGGlP~ga~gGr~  283 (432)
T COG0001         271 GGGLPIGAFGGRA  283 (432)
T ss_pred             cCCcceeeeccHH
Confidence            8888899987664

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=2.9e-09  Score=93.76  Aligned_cols=227  Identities=14%  Similarity=0.063  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHh
Q 018437           94 TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY  173 (356)
Q Consensus        94 ~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~  173 (356)
                      ..+-.+.....-++.|+.... +...+-+.+|  +++.+++...|.+.++          -..|+.+.....|..+..-.
T Consensus        56 ~~isne~a~~~i~l~glhav~-nc~vvpl~tg--mslslc~~s~r~krpk----------akyiiw~ridqks~~ksi~~  122 (432)
T KOG3843|consen   56 ACISNEFAKDAIHLAGLHAVA-NCFVVPLATG--MSLSLCFLSLRHKRPK----------AKYIIWLRIDQKSCFKSIIH  122 (432)
T ss_pred             HHHHHHHHHHHHHHhhhhhhh-ceeEEecccc--ccHHHHHHHHhhcCCc----------ccEEEEEecchHHHHHHHHh
Confidence            344556666667778876521 1222334445  6667777777665221          23688888888888888888


Q ss_pred             hCCeeEEEEe--cCCccccCHHHHHHHHhh-CceEEEEecCCCcccc---cCCHHHHHHHHHHhhhccCCCCcEEEeccc
Q 018437          174 FEVELKEVKL--EEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGE---FEDVKLLHDLLTKKNEETGWDTPIHVDAAS  247 (356)
Q Consensus       174 ~G~~v~~v~~--~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~---~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~  247 (356)
                      .|++++.|+.  +.+....|+++++..+++ .+.+|...+.+|..-+   .|.+++|+.+|..|      +++-+|..||
T Consensus       123 agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~------diphivnnay  196 (432)
T KOG3843|consen  123 AGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAH------DIPHIVNNAY  196 (432)
T ss_pred             cCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHcc------Cchhhhcccc
Confidence            8999887764  334578899999999876 3445555555555443   48999999999999      9999999999


Q ss_pred             ccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHH
Q 018437          248 GGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIA  327 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~  327 (356)
                      |......+. .....-...++|.++-|..|.+++|.|..++..-++.+.+ .  ....|++..          ++...+.
T Consensus       197 glqsee~i~-~iaa~~~~grida~vqsldknf~vpvggaiia~fk~n~iq-~--iak~ypgra----------sa~ps~d  262 (432)
T KOG3843|consen  197 GLQSEECIH-KIAAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQ-E--IAKMYPGRA----------SASPSLD  262 (432)
T ss_pred             ccchHHHHH-HHHHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHH-H--HHHhCCCcc----------ccCccHH
Confidence            864321110 0111112568999999999999999986665432222221 1  122344443          3344666


Q ss_pred             HHHHHHHhCHHHHHHHHHHHHhccCc
Q 018437          328 QYYQFIRLGFEEITFTFISSLKVCPF  353 (356)
Q Consensus       328 ~~~~l~~lg~~G~~~~~~~~~~~a~~  353 (356)
                      +..+|..+|+.++.+......++--|
T Consensus       263 llitll~~gqn~f~e~~~eqkemf~~  288 (432)
T KOG3843|consen  263 LLITLLSLGQNAFKELFGEQKEMFLK  288 (432)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHHHHH
Confidence            77888889999988887776655433

>PRK12403 putative aminotransferase; Provisional

Probab=98.78  E-value=1.2e-06  Score=86.40  Aligned_cols=204  Identities=13%  Similarity=-0.004  Sum_probs=116.1

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.++.............+...++.+.++++++.+.     ....++++||||+..|++.++..+..    
T Consensus        71 ~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGseA~e~AiklAr~~~~~----  141 (460)
T PRK12403         71 GRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHY-----SHAIYTNSGSEANEVLIRTVRRYWQV----  141 (460)
T ss_pred             CCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHh----
Confidence            457888888888765322111112223445567777888876321     23789999999999999999875321    


Q ss_pred             cCCCCCCCeEEe-cCCCcchHHHHHHhhCCe-----------eEEEEecCC---ccc--------cCHHHHHHHHh----
Q 018437          148 QGKPYDKPNIVT-GANVQVCWEKFARYFEVE-----------LKEVKLEEG---YYV--------MNPVKAVELVD----  200 (356)
Q Consensus       148 ~g~~~~~~~vi~-s~~~h~s~~~~~~~~G~~-----------v~~v~~~~~---~~~--------~d~~~L~~~i~----  200 (356)
                      .|.+ .+..|+. ....|-+..-++...|..           +..+|....   .+.        .+.+.|++.+.    
T Consensus       142 ~g~~-~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~  220 (460)
T PRK12403        142 LGKP-QKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGA  220 (460)
T ss_pred             hCCC-CCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCC
Confidence            1110 1223433 334465544444433322           333432110   001        11355666653    


Q ss_pred             hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-ccCCCceEEEEcC
Q 018437          201 ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSG  275 (356)
Q Consensus       201 ~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Ds~~~~~  275 (356)
                      +++.+|++-.....-|.+.|    +++|.++|++|      |+++++|++++|+...  ..-...+ +.+ ..|.++  .
T Consensus       221 ~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~------g~lLI~DEV~tGfGRt--G~~~a~e~~gv-~PDiv~--~  289 (460)
T PRK12403        221 ENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY------DVLLCADEVIGGFGRT--GEWFAHEHFGF-EPDTLS--I  289 (460)
T ss_pred             CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCcC--chhhhhhhcCC-CCCeEE--E
Confidence            24556666665555677766    99999999999      9999999999775321  1000001 111 247776  4


Q ss_pred             CcCCCCCc-CeeEEEEeC
Q 018437          276 HKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       276 hK~l~~P~-g~g~l~~~~  292 (356)
                      -|.+++.+ .+|.++.++
T Consensus       290 gK~lggG~~Piga~v~~~  307 (460)
T PRK12403        290 AKGLTSGYVPMGGLVLSK  307 (460)
T ss_pred             cccccccccceEEEEECH
Confidence            68876664 677777754

>PLN00144 acetylornithine transaminase

Probab=98.78  E-value=1.2e-06  Score=84.58  Aligned_cols=197  Identities=13%  Similarity=-0.075  Sum_probs=114.8

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++........+  ..+...++.+.+.++.+.+       ...++++||||+..|++.++..... + 
T Consensus        31 h~~p~v~~ai~~q~~~~~~~~~~~--~~~~~~~la~~l~~~~~~~-------~v~f~~sGseA~e~AlklAr~~~~~-~-   99 (382)
T PLN00144         31 HGDPDWVKAVAEQAGTLAHVSNVY--HTIPQVELAKRLVASSFAD-------RVFFCNSGTEANEAAIKFARKYQRV-R-   99 (382)
T ss_pred             CCCHHHHHHHHHHHHhcCCccccc--cCHHHHHHHHHHHhcCCCC-------eEEEeCCcHHHHHHHHHHHHHHHhc-c-
Confidence            345788888887776422111111  1233445666677765433       3789999999999999999865321 1 


Q ss_pred             hcCCCCC------CCeEEecC-CCcchHHHHHHhhCCe------------eEEEEecCCccccCHHHHHHHHhh-CceEE
Q 018437          147 EQGKPYD------KPNIVTGA-NVQVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDE-NTICV  206 (356)
Q Consensus       147 ~~g~~~~------~~~vi~s~-~~h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v  206 (356)
                        +....      +.+|+.-. ..|-...-+....+-.            +..+|.      -|+++|++.+.+ ++++|
T Consensus       100 --~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~~~~~~~aav  171 (382)
T PLN00144        100 --APDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY------GNLEAARKLIQKGKTAAV  171 (382)
T ss_pred             --CCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC------CCHHHHHHhcCCCCeEEE
Confidence              11110      24555544 4444333333322211            122221      168999988864 46677


Q ss_pred             EEecCCCccccc--CC--HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC
Q 018437          207 AAILGSTLTGEF--ED--VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY  282 (356)
Q Consensus       207 ~~~~~~~~tG~~--~~--i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P  282 (356)
                      ++.-..++.|..  ++  +++|.++|++|      ++++|.|+++.++...  ..-...+..-...|.+  +.-|.+.+.
T Consensus       172 i~eP~q~~gg~~~~~~~~~~~l~~l~~~~------g~llI~DEv~tg~gr~--g~~~~~~~~~~~PDi~--t~sK~l~~G  241 (382)
T PLN00144        172 FVEPVQGEGGIYPATKEFLQGLRALCDEA------GALLVFDEVQCGLGRT--GYLWAHEAYGVEPDIM--TLAKPLAGG  241 (382)
T ss_pred             EEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCcc--chHhhhhhcCCCCCEE--EecccccCC
Confidence            766666664443  34  89999999999      9999999999875331  1000111111124544  456988766


Q ss_pred             cCeeEEEEeC
Q 018437          283 AGVGWVVWRT  292 (356)
Q Consensus       283 ~g~g~l~~~~  292 (356)
                      ..+|+++.++
T Consensus       242 ~pig~v~~~~  251 (382)
T PLN00144        242 LPIGAVLVTE  251 (382)
T ss_pred             cceEEEEEcH
Confidence            7889998864

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=98.78  E-value=1.2e-08  Score=89.69  Aligned_cols=115  Identities=20%  Similarity=0.160  Sum_probs=97.3

Q ss_pred             CCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHH
Q 018437          118 AVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVE  197 (356)
Q Consensus       118 ~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~  197 (356)
                      ..+++..|+.|.+-..+++.+.+        |    +.+|+...|++..|.-.+...+++|+++|.+.+ +.++.+++.+
T Consensus        87 dnic~GvGsDE~ID~iiR~~c~P--------G----keKIl~cPPtysMY~v~A~iNd~eVvkvpl~pd-F~lnvdai~e  153 (375)
T KOG0633|consen   87 DNICVGVGSDELIDLIIRCVCDP--------G----KEKILDCPPTYSMYVVDAAINDAEVVKVPLNPD-FSLNVDAIAE  153 (375)
T ss_pred             cceEEecCcHHHHHHHHhheecC--------C----ccceeecCCcceeEEEEeecCCceEEEecCCCC-ccccHHHHHH
Confidence            34889999999999999998875        1    467888889888887788889999999999985 9999999999


Q ss_pred             HHhh--CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccc
Q 018437          198 LVDE--NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (356)
Q Consensus       198 ~i~~--~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~  250 (356)
                      .+..  .++++++++|+||||.+...+.|.++.+ ++.    +.+++||+||-.|
T Consensus       154 vl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe-~p~----nglVVvDEAYidF  203 (375)
T KOG0633|consen  154 VLELDSKIKCIFLTSPGNPTGSIIKEDDILKILE-MPD----NGLVVVDEAYIDF  203 (375)
T ss_pred             HHhccccceEEEEcCCCCCCcccccHHHHHHHHh-CCC----CcEEEEeeeeEee
Confidence            9875  5789999999999999988888888875 433    6899999998653

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.77  E-value=7.4e-07  Score=87.28  Aligned_cols=194  Identities=12%  Similarity=-0.020  Sum_probs=114.8

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+.......  .  ....+.++.+.+.+++.. .     ....++++||||+..|++.+|...     
T Consensus        69 h~~p~v~~ai~~q~~~~~~~~--~--~~~~~~~la~~l~~~~p~-~-----~~v~f~~sGseA~e~AlklAr~~t-----  133 (428)
T PRK12389         69 HAHPHITKAITEAAENGVLYG--T--PTELEIEFAKMLKEAIPS-L-----EKVRFVNSGTEAVMTTIRVARAYT-----  133 (428)
T ss_pred             CCCHHHHHHHHHHHHhCCccC--C--CCHHHHHHHHHHHHhCCC-C-----cEEEEeCCHHHHHHHHHHHHHHhh-----
Confidence            345788888887776432211  1  123345666677776531 1     247899999999999999998741     


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhhCCeeEE--------EE--ecCCcc---ccCHHHHHHHHhh---CceEEEEe
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFEVELKE--------VK--LEEGYY---VMNPVKAVELVDE---NTICVAAI  209 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~G~~v~~--------v~--~~~~~~---~~d~~~L~~~i~~---~~~~v~~~  209 (356)
                        |    +.+|+.-. ..|-...-++...|.....        ++  ..++..   .-|++.|++.+++   ++.+|++.
T Consensus       134 --g----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~E  207 (428)
T PRK12389        134 --G----RTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVE  207 (428)
T ss_pred             --C----CCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEe
Confidence              1    34555444 4454333333322211100        00  000000   1168899988863   45677776


Q ss_pred             cCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCe
Q 018437          210 LGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV  285 (356)
Q Consensus       210 ~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~  285 (356)
                      -.....|.+.|    +++|.++|+++      |+++++|+++.|+=..+......+++   ..|.+++  -|.+++....
T Consensus       208 Pv~g~~G~~~p~~~yl~~l~~lc~~~------g~llI~DEV~tG~Rt~~~~a~~~~gv---~PDivt~--gK~lggG~Pi  276 (428)
T PRK12389        208 PIVGNFGIVEPKPGFLEAVNELAHEA------GALVIYDEVITAFRFMYGGAQDLLGV---EPDLTAL--GKIIGGGLPI  276 (428)
T ss_pred             CCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEEccccccccCcchhhHHhCC---CCCeeee--chhhcCCCce
Confidence            66666687777    99999999999      99999999998751111100001111   3566654  5877666667


Q ss_pred             eEEEEeC
Q 018437          286 GWVVWRT  292 (356)
Q Consensus       286 g~l~~~~  292 (356)
                      |.++.++
T Consensus       277 ~av~~~~  283 (428)
T PRK12389        277 GAYGGRK  283 (428)
T ss_pred             eEEeEHH
Confidence            8887654

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=98.77  E-value=1.6e-06  Score=84.84  Aligned_cols=203  Identities=12%  Similarity=-0.028  Sum_probs=113.2

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +.+|.+.+++.+.+......... ........++.+.+++++..+...  .....+ +++||||+..|++.+|..     
T Consensus        55 h~~p~v~~ai~~ql~~~~~~~~~-~~~~~~~~~lae~l~~~~~~~~~~--~~~~~f~~~sGseA~e~AlklAr~~-----  126 (425)
T PRK09264         55 HNNPVLKQALIDYLQRDGITHGL-DMHTTAKREFLETFEETILKPRGL--DYKVQFTGPTGTNAVEAALKLARKV-----  126 (425)
T ss_pred             CCCHHHHHHHHHHHHhccccccc-ccCcHHHHHHHHHHHHhhcCCcCC--CceEEEeCCCHHHHHHHHHHHHHHh-----
Confidence            34578888888776542111111 111234445666677765322100  012445 479999999999999864     


Q ss_pred             HhcCCCCCCCeEEecCCC-cchHHHHHHhh---------C---CeeEEEEecCC-ccc-cCHHHHHHHHhh------Cce
Q 018437          146 KEQGKPYDKPNIVTGANV-QVCWEKFARYF---------E---VELKEVKLEEG-YYV-MNPVKAVELVDE------NTI  204 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~-h~s~~~~~~~~---------G---~~v~~v~~~~~-~~~-~d~~~L~~~i~~------~~~  204 (356)
                        .|    +.+||.-..+ |-...-++...         +   ..+..+|.... ... -|+++|++.+++      ++.
T Consensus       127 --tg----r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a  200 (425)
T PRK09264        127 --TG----RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPA  200 (425)
T ss_pred             --cC----CCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceE
Confidence              11    3456654443 43322222221         1   12455665321 001 267888888853      345


Q ss_pred             EEEEecCCCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC
Q 018437          205 CVAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (356)
Q Consensus       205 ~v~~~~~~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~  280 (356)
                      +|++--.....|.+    +.+++|.++|++|      |+++++|+++.|+...  ......+...-..|.++++  |.++
T Consensus       201 avi~Epv~g~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEV~tG~Grt--G~~~~~~~~~v~PDi~t~~--K~l~  270 (425)
T PRK09264        201 AVIVETVQGEGGINVASAEWLQRLAKLCRKH------DILLIVDDIQAGCGRT--GTFFSFERAGITPDIVTLS--KSIS  270 (425)
T ss_pred             EEEEecccCCCCCcCCCHHHHHHHHHHHHHc------CcEEEEechhhCCccc--cHHHHHhhcCCCCCEEEec--cccC
Confidence            66666555555654    3689999999999      9999999999764220  0000011111135777664  9765


Q ss_pred             C-CcCeeEEEEeCC
Q 018437          281 V-YAGVGWVVWRTK  293 (356)
Q Consensus       281 ~-P~g~g~l~~~~~  293 (356)
                      . ...+|+++.+++
T Consensus       271 ~~G~pigav~~~~~  284 (425)
T PRK09264        271 GYGLPMALVLIKPE  284 (425)
T ss_pred             CCccceEEEEEchh
Confidence            4 445688888643

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=98.76  E-value=2.5e-06  Score=83.09  Aligned_cols=203  Identities=11%  Similarity=-0.014  Sum_probs=115.2

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +.+|.+.+++.+.+........ .....+...++.+.+++++..+...  .....+ +++|+||+..|++.++..     
T Consensus        51 h~~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~~lae~l~~~~~~~~~~--~~~~~f~~~sGseA~e~AlklAr~~-----  122 (412)
T TIGR02407        51 HNNPKLKQALIDYLADDGIIHS-LDMATEAKREFLETFNEIILKPRGL--DYKVQFPGPTGTNAVESALKLARKV-----  122 (412)
T ss_pred             CCCHHHHHHHHHHHhhccceec-cccCcHHHHHHHHHHHHhccCccCC--CceEEEeCCCchHHHHHHHHHHhhh-----
Confidence            4458888888877753211111 1112334445666677764222100  012445 579999999999999864     


Q ss_pred             HhcCCCCCCCeEEecCC-CcchHHHHHHhhC------------CeeEEEEecCC-cc-ccCHHHHHHHHhh------Cce
Q 018437          146 KEQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEG-YY-VMNPVKAVELVDE------NTI  204 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~-~~-~~d~~~L~~~i~~------~~~  204 (356)
                        .|    +++|+.-.. .|-...-+....|            ..+..+|.... .. .-+++.+++.+++      ++.
T Consensus       123 --tg----r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a  196 (412)
T TIGR02407       123 --TG----RSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPA  196 (412)
T ss_pred             --cC----CCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceE
Confidence              11    356665444 4433333332221            12344554320 00 1246778888862      456


Q ss_pred             EEEEecCCCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC
Q 018437          205 CVAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (356)
Q Consensus       205 ~v~~~~~~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~  280 (356)
                      +|++--.....|.+    +-+++|.++|++|      |++++.|+++.|+...  ......+..--..|.++++  |+++
T Consensus       197 avi~Epi~g~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEV~tG~GRt--G~~~a~~~~~v~PDi~~~~--K~lg  266 (412)
T TIGR02407       197 AVILETVQGEGGINVASDEWLQRLEKLCRRH------DILLIVDDIQAGCGRT--GTFFSFEPAGIEPDIVCLS--KSIS  266 (412)
T ss_pred             EEEeccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCcc--chhHHhcccCCCCCEEEec--hhcc
Confidence            77766666666764    3479999999999      9999999999764220  0000011111135766654  9976


Q ss_pred             C-CcCeeEEEEeCC
Q 018437          281 V-YAGVGWVVWRTK  293 (356)
Q Consensus       281 ~-P~g~g~l~~~~~  293 (356)
                      + ...+|+++.+++
T Consensus       267 ~~G~pigav~~~~~  280 (412)
T TIGR02407       267 GYGLPLALTLIKPE  280 (412)
T ss_pred             CCccceeEEEEchh
Confidence            5 566899998753

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=98.75  E-value=1.4e-06  Score=85.64  Aligned_cols=198  Identities=12%  Similarity=-0.058  Sum_probs=111.4

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+++.. +........+...++.+.+.+++....    .....++++|+||+..|++.++...     
T Consensus        72 h~~p~v~~ai~~q~~~~~-~~~~~~~~~~~~~~la~~l~~~~p~~~----~~~v~f~~sGseA~e~AlklAr~~t-----  141 (443)
T PRK06058         72 NSAPRVVEAVREQVARFT-HTCFMVTPYEGYVAVAEQLNRLTPGDH----EKRSALFNSGAEAVENAVKIARSYT-----  141 (443)
T ss_pred             CCCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCCCCC----CCEEEEeCCcHHHHHHHHHHHHHhh-----
Confidence            345788888887776421 111111123445567777888765321    0236888899999999999887641     


Q ss_pred             hcCCCCCCCeEEecCCCcch-HHHHHHhhC--------C-----eeEEEEecCCccc------c--------CHHHHHHH
Q 018437          147 EQGKPYDKPNIVTGANVQVC-WEKFARYFE--------V-----ELKEVKLEEGYYV------M--------NPVKAVEL  198 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s-~~~~~~~~G--------~-----~v~~v~~~~~~~~------~--------d~~~L~~~  198 (356)
                        |    +++|+....+|+. ..-+....+        .     .+..+|.... ++      .        ..+.|++.
T Consensus       142 --g----r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~  214 (443)
T PRK06058        142 --G----RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYP-YRDPKGLATDGEEAAARAITVIEKQ  214 (443)
T ss_pred             --C----CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcc-cccccccccchHHHHHHHHHHHHHh
Confidence              1    3567665554443 323322211        1     1333332110 11      1        12334444


Q ss_pred             Hh-hCceEEEEecCCCcc-cccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEE
Q 018437          199 VD-ENTICVAAILGSTLT-GEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSIN  272 (356)
Q Consensus       199 i~-~~~~~v~~~~~~~~t-G~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~  272 (356)
                      +. +++.+|++ -|-... |.+-|    +++|.++|++|      |+++++|+++.|+...  .........--..|.++
T Consensus       215 ~~~~~iAavi~-EPi~g~gG~~~p~~~yl~~lr~lc~~~------gillI~DEV~tGfgRt--G~~fa~~~~gv~PDiv~  285 (443)
T PRK06058        215 VGADNLAAVII-EPIQGEGGFIVPAEGFLPALLEWCREN------GVVFIADEVQTGFART--GAWFACEHEGIVPDLIT  285 (443)
T ss_pred             hCCCceEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCCcC--hhhhHHHhcCCCCCEEE
Confidence            43 34555554 444444 44433    89999999999      9999999999875321  10000011111357777


Q ss_pred             EcCCcCCCCCcCeeEEEEeC
Q 018437          273 VSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       273 ~~~hK~l~~P~g~g~l~~~~  292 (356)
                      ++  |.+.+.+..|.++.++
T Consensus       286 ~g--K~l~~G~Pi~av~~~~  303 (443)
T PRK06058        286 TA--KGIAGGLPLSAVTGRA  303 (443)
T ss_pred             Ec--ccccCCCccEEEEEcH
Confidence            74  8877667788888764

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=98.73  E-value=2e-06  Score=84.74  Aligned_cols=194  Identities=11%  Similarity=-0.015  Sum_probs=114.2

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+..........  ......++.+.+++++..+.     ....++++||||+..|++.+|.....   
T Consensus        98 H~~p~v~~Ai~~ql~~l~~~~~~~--~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGsEAve~AlklAr~~t~~---  167 (459)
T PRK11522         98 HRNPVVVSAVQNQLAKQPLHSQEL--LDPLRAMLAKTLAALTPGKL-----KYSFFCNSGTESVEAALKLAKAYQSP---  167 (459)
T ss_pred             CCCHHHHHHHHHHHhhCccccccc--CCHHHHHHHHHHHHhCCCCC-----CEEEEeCCchHHHHHHHHHHHHHhcc---
Confidence            345788888887776432221111  12334456666777754321     24789999999999999999865210   


Q ss_pred             hcCCCCCCCeEEecCCC-cchHHHHHHhhCCe------------eEEEEecCCccccCHHHHHHHHhh------CceEEE
Q 018437          147 EQGKPYDKPNIVTGANV-QVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDE------NTICVA  207 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~-h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~  207 (356)
                       +|    +.+||....+ |-...-++...|-.            +..+|.      -|.+++++.++.      ++.+|+
T Consensus       168 -~g----r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~~~~iAavI  236 (459)
T PRK11522        168 -RG----KFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF------GNIEAMRTALSECKKTGDDVAAVI  236 (459)
T ss_pred             -CC----CcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC------CCHHHHHHHHHHhhccCCcEEEEE
Confidence             01    2356655544 43332233222211            112221      167888888752      456777


Q ss_pred             EecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEEcCCcCCCCC
Q 018437          208 AILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKYGLVY  282 (356)
Q Consensus       208 ~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P  282 (356)
                      +.......|.+.|    ++++.++|++|      |+++++|+++.|+..  . ... .....--..|.+++  -|.+++.
T Consensus       237 vEpv~g~~G~~~pp~~yl~~lr~lc~~~------g~llI~DEV~tG~GR--t-G~~~a~e~~gv~PDivt~--gK~lggG  305 (459)
T PRK11522        237 LEPIQGEGGVILPPEGYLTAVRKLCDEF------GALLILDEVQTGMGR--T-GKMFACEHENVQPDILCL--AKALGGG  305 (459)
T ss_pred             EecccCCCCCccCCHHHHHHHHHHHHHc------CCEEEeccceecCCc--c-chhhhhhccCCCCCEEEe--chhhhCC
Confidence            7766666677776    99999999999      999999999976422  0 100 01101113576654  6887665


Q ss_pred             -cCeeEEEEeC
Q 018437          283 -AGVGWVVWRT  292 (356)
Q Consensus       283 -~g~g~l~~~~  292 (356)
                       ..+|.++.++
T Consensus       306 ~~Pigav~~~~  316 (459)
T PRK11522        306 VMPIGATIATE  316 (459)
T ss_pred             CccceeEEEcH
Confidence             3577887764

>PRK07482 hypothetical protein; Provisional

Probab=98.72  E-value=1.7e-06  Score=85.47  Aligned_cols=206  Identities=12%  Similarity=-0.089  Sum_probs=115.7

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++...+.........+.+.++.+.+.+++..+.     ....++++||||+..|++.++.....   
T Consensus        66 h~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-----~~v~f~~sGSEAve~AlKlAr~~~~~---  137 (461)
T PRK07482         66 YGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGM-----SKVYYGLSGSDANETQIKLVWYYNNV---  137 (461)
T ss_pred             CCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCchHHHHHHHHHHHHHHHHh---
Confidence            3458888888887765321111111223445567777887763221     23789999999999999999865321   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhC------------CeeEEEEecCC-cc-----------ccCHHHHHHHHh-
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEG-YY-----------VMNPVKAVELVD-  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~-~~-----------~~d~~~L~~~i~-  200 (356)
                       .|.. .+.+||.-.. .|-...-+....|            -.+..++.... +.           .-++++|++.+. 
T Consensus       138 -~g~~-~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  215 (461)
T PRK07482        138 -LGRP-EKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILA  215 (461)
T ss_pred             -cCCC-CCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHh
Confidence             1211 1345665443 3432211111111            12333433210 00           114677888884 


Q ss_pred             ---hCceEEEEecCCCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEE
Q 018437          201 ---ENTICVAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (356)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~  273 (356)
                         +++.+|++.-.....|.+    .-+++|.++|++|      |+++|+|+++.|+...  ..-...+..--..|.+++
T Consensus       216 ~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~------giLlI~DEV~tGfGRt--G~~~a~~~~gv~PDiv~~  287 (461)
T PRK07482        216 EGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKY------DILLIADEVVTGFGRL--GSMFGSDHYGIEPDLITV  287 (461)
T ss_pred             cCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHh------CCEEEEeccccCCCcC--cchhhHHhcCCCCCEEEE
Confidence               245666666555444555    2378999999999      9999999999875321  100001111114688875


Q ss_pred             cCCcCCCCCc-CeeEEEEeC
Q 018437          274 SGHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       274 ~~hK~l~~P~-g~g~l~~~~  292 (356)
                        -|.+.+.+ ..|.++.++
T Consensus       288 --gKgl~gG~~Pi~av~~~~  305 (461)
T PRK07482        288 --AKGLTSAYAPLSGSIVGE  305 (461)
T ss_pred             --ccccccCccccceeeecH
Confidence              58876654 567777764

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=98.71  E-value=6.4e-07  Score=87.65  Aligned_cols=198  Identities=10%  Similarity=-0.083  Sum_probs=110.3

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.++......... .......++.+++.++.+.+..    ....++++|++|+..|+..++...      
T Consensus        58 ~~~~i~~a~~~~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~~~~----~~~~f~~sGsea~e~Alklar~~~------  126 (425)
T PRK08088         58 LHPKVVAAVEAQLKKLSHTCFQV-LAYEPYLELCEKMNQKVPGDFA----KKTLLVTTGSEAVENAVKIARAAT------  126 (425)
T ss_pred             CCHHHHHHHHHHHhhCCCccccc-cCCHHHHHHHHHHHHhCCCCCC----CEEEEeCCcHHHHHHHHHHHHHHh------
Confidence            35788888887776432111111 1112233677778887764321    246888899999999999987641      


Q ss_pred             cCCCCCCCeEEecCC-CcchHHHHHHhhCC-------------eeEE--EEecCCcccc--CHHHHHHHHh-----hCce
Q 018437          148 QGKPYDKPNIVTGAN-VQVCWEKFARYFEV-------------ELKE--VKLEEGYYVM--NPVKAVELVD-----ENTI  204 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~-~h~s~~~~~~~~G~-------------~v~~--v~~~~~~~~~--d~~~L~~~i~-----~~~~  204 (356)
                       +    +..|+.-.+ .|....-+....+-             ++..  +|.+......  +++.|++.++     ++..
T Consensus       127 -~----r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~a  201 (425)
T PRK08088        127 -K----RSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIA  201 (425)
T ss_pred             -C----CCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceE
Confidence             1    234444344 44443332222110             0122  2222211111  1556888885     3445


Q ss_pred             EEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEEcCCcCC
Q 018437          205 CVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKYG  279 (356)
Q Consensus       205 ~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l  279 (356)
                      +|++.-....-|.+-+    +++|.++|+++      +++++.|++|+++..+   +.. .++..-.-.|.  .+..|.+
T Consensus       202 avi~Epi~~~~G~~~~~~~~~~~l~~l~~~~------~~~lI~Dev~~g~g~~---g~~~~~~~~~~~pdi--~s~sK~l  270 (425)
T PRK08088        202 AIIIEPVQGEGGFYAASPAFMQRLRALCDEH------GIMLIADEVQTGAGRT---GTLFAMEQMGVAADL--TTFAKSI  270 (425)
T ss_pred             EEEECcccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCCcC---cchhHHhhcCCCCCE--EEEeccc
Confidence            5655554444455544    89999999999      9999999999874321   111 11111112343  4457988


Q ss_pred             CCCcCeeEEEEeC
Q 018437          280 LVYAGVGWVVWRT  292 (356)
Q Consensus       280 ~~P~g~g~l~~~~  292 (356)
                      .+.+.+|+++.+.
T Consensus       271 ~~G~rig~v~~~~  283 (425)
T PRK08088        271 AGGFPLAGVTGRA  283 (425)
T ss_pred             cCCCcceeeEecH
Confidence            7667789998753

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=98.70  E-value=1.4e-06  Score=85.67  Aligned_cols=202  Identities=12%  Similarity=-0.013  Sum_probs=112.3

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.-..... .....+...++.+.+++++....     ....++++|+||+..|++.++.....+  
T Consensus        65 h~~p~v~~ai~~ql~~l~~~~~-~~~~~~~~~~la~~L~~~~p~~~-----~~v~f~~sGseAve~AlklAr~~~~~~--  136 (445)
T PRK09221         65 HGRPEIVEAVARQAATLDYAPA-FQMGHPLAFELAERLAELAPGGL-----DHVFFTNSGSESVDTALKIALAYHRAR--  136 (445)
T ss_pred             CCCHHHHHHHHHHHHhccCccc-cccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHhc--
Confidence            3457888888877764221111 11112334456677777764221     237899999999999999998753211  


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhC------------CeeEEEEecC--Cc--cc--------cCHHHHHHHHh-
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEE--GY--YV--------MNPVKAVELVD-  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~--~~--~~--------~d~~~L~~~i~-  200 (356)
                        |.. .+.+||.-.. .|-...-+....|            .++..+|...  ..  +.        -..++|++.++ 
T Consensus       137 --g~~-~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  213 (445)
T PRK09221        137 --GQG-TRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVAL  213 (445)
T ss_pred             --CCC-CCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHh
Confidence              111 1345654443 3432221111111            1233444321  00  00        12357777775 


Q ss_pred             ---hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccc---cccCCCCcccccCCCceE
Q 018437          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA---PFLYPDLEWDFRLPLVKS  270 (356)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~---~~~~~~~~~~~~~~~~Ds  270 (356)
                         +++.+|++--.....|.+.|    +++|.++|+++      |+++++|+++.|+..   .|...  ..++   ..|.
T Consensus       214 ~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~------g~llI~DEV~tG~GRtG~~~~~~--~~gv---~PDi  282 (445)
T PRK09221        214 HDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKH------GILLIFDEVITGFGRLGAAFAAE--RFGV---TPDI  282 (445)
T ss_pred             cCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeehhhCCCcCchhhHHH--hcCC---CCCE
Confidence               34567777777777788877    99999999999      999999999866422   01111  0111   2476


Q ss_pred             EEEcCCcCCCCC-cCeeEEEEeC
Q 018437          271 INVSGHKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       271 ~~~~~hK~l~~P-~g~g~l~~~~  292 (356)
                      +++  -|.+.+. ...|.++.++
T Consensus       283 ~~~--gK~l~gG~~Pi~av~~~~  303 (445)
T PRK09221        283 ITF--AKGLTNGAIPMGAVIASD  303 (445)
T ss_pred             EEe--ccccccCcccceeeEEcH
Confidence            664  4765433 2356666654

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=98.70  E-value=3.7e-06  Score=82.59  Aligned_cols=205  Identities=13%  Similarity=-0.038  Sum_probs=113.7

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.-..... .....+.+.++.+.+++++....     ....++++||||+..|++.++.....   
T Consensus        62 h~~p~v~~ai~~ql~~l~~~~~-~~~~~~~~~~la~~l~~~~p~~~-----~~v~f~~sGseA~e~AlklAr~~~~~---  132 (442)
T PRK13360         62 HGRPEIVEAVRAQAGELDYAPA-FQMGHPKAFELANRIAEIAPGGL-----NHVFFTNSGSESVDTALKIALAYHRA---  132 (442)
T ss_pred             CCCHHHHHHHHHHHHhCCCccc-CCcCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHh---
Confidence            4457888888877764221111 11112334467777888763211     23789999999999999999875321   


Q ss_pred             hcCCCCCCCeEEecCCC-cchHHHHHHhhC------------CeeEEEEecCC--c--cc--------cCHHHHHHHHh-
Q 018437          147 EQGKPYDKPNIVTGANV-QVCWEKFARYFE------------VELKEVKLEEG--Y--YV--------MNPVKAVELVD-  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~-h~s~~~~~~~~G------------~~v~~v~~~~~--~--~~--------~d~~~L~~~i~-  200 (356)
                       .|. ..+.+||.-..+ |-...-+....|            -.+..+|...+  .  +.        -..++|++++. 
T Consensus       133 -~g~-~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~  210 (442)
T PRK13360        133 -RGE-GSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTL  210 (442)
T ss_pred             -cCC-CCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHh
Confidence             111 113456654444 432221211111            12344443210  0  10        12457788775 


Q ss_pred             ---hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEE
Q 018437          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (356)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~  273 (356)
                         +++.+|++-......|.+.|    +++|.++|++|      |+++++|+++.|+..  ...-......--..|.+++
T Consensus       211 ~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~------g~llI~DEv~tG~Gr--tG~~~a~~~~gv~PDivt~  282 (442)
T PRK13360        211 HDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKH------GILLIFDEVITGFGR--LGAPFAAQYFGVTPDLLTC  282 (442)
T ss_pred             cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCC--CccchhhhhcCCCCceeee
Confidence               34566776666666677777    99999999999      999999999965422  0000001111113576654


Q ss_pred             cCCcCCCCC-cCeeEEEEeC
Q 018437          274 SGHKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       274 ~~hK~l~~P-~g~g~l~~~~  292 (356)
                        -|.+.+. ..+|.++.++
T Consensus       283 --gK~l~gG~~P~gav~~~~  300 (442)
T PRK13360        283 --AKGLTNGAIPMGAVFVSS  300 (442)
T ss_pred             --eeccccCccceEEEEEcH
Confidence              5876543 3466676654

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=98.70  E-value=1.3e-06  Score=86.25  Aligned_cols=189  Identities=14%  Similarity=0.010  Sum_probs=112.5

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.++.....  ..  ....+.++.+.+.+.+.. .     ....++++||||+..|++.+|..       
T Consensus       116 ~~p~v~~av~~ql~~~~~~--~~--~~~~~~~lAe~l~~~~p~-~-----~~v~f~~SGsEA~e~AlklAR~~-------  178 (474)
T PLN02482        116 ADDEVLAALAETMKKGTSF--GA--PCLLENVLAEMVIDAVPS-V-----EMVRFVNSGTEACMGVLRLARAY-------  178 (474)
T ss_pred             CCHHHHHHHHHHHhhCCCC--CC--CCHHHHHHHHHHHHhCCC-C-----CEEEEeCChHHHHHHHHHHHHHh-------
Confidence            4578888888877643221  11  234556777788887632 1     24789999999999999999864       


Q ss_pred             cCCCCCCCeEEecC-CCcchHHHHHHhh-------------CCee----EEEEecCCccccCHHHHHHHHhh---CceEE
Q 018437          148 QGKPYDKPNIVTGA-NVQVCWEKFARYF-------------EVEL----KEVKLEEGYYVMNPVKAVELVDE---NTICV  206 (356)
Q Consensus       148 ~g~~~~~~~vi~s~-~~h~s~~~~~~~~-------------G~~v----~~v~~~~~~~~~d~~~L~~~i~~---~~~~v  206 (356)
                      .|    +++|+.-. ..|-.........             |...    ..+.+.   + -|+++|++.+.+   +..+|
T Consensus       179 tg----r~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~-nd~~~l~~~l~~~~~~iAav  250 (474)
T PLN02482        179 TG----REKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAP---Y-NDLEAVKKLFEANKGEIAAV  250 (474)
T ss_pred             cC----CCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEec---C-CChHHHHHHHHhCCCceEEE
Confidence            11    35566543 3443221111110             1100    001111   1 178899988863   45566


Q ss_pred             EEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC
Q 018437          207 AAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY  282 (356)
Q Consensus       207 ~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P  282 (356)
                      ++--.....|.+.|    +++|.++|++|      |+++++|+++.|+-.......  ..+.+ ..|.+++  -|.+++.
T Consensus       251 I~Epv~g~~G~i~p~~~fl~~lr~lc~~~------g~lLI~DEV~tGfR~g~~ga~--~~~gv-~PDi~t~--gK~lggG  319 (474)
T PLN02482        251 ILEPVVGNSGFIVPKKEFLEGLREITKEN------GALLVFDEVMTGFRIAYGGAQ--EYFGI-TPDLTTL--GKVIGGG  319 (474)
T ss_pred             EECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCeecCcchHh--HHhCC-CCCEEEe--cchhhCC
Confidence            66665566676654    56899999999      999999999876422110000  01111 3576654  6887766


Q ss_pred             cCeeEEEEeC
Q 018437          283 AGVGWVVWRT  292 (356)
Q Consensus       283 ~g~g~l~~~~  292 (356)
                      ..+|.++.++
T Consensus       320 ~Pigav~g~~  329 (474)
T PLN02482        320 LPVGAYGGRR  329 (474)
T ss_pred             CceEEEEEcH
Confidence            7788887654

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=98.69  E-value=2.3e-06  Score=83.58  Aligned_cols=198  Identities=13%  Similarity=-0.039  Sum_probs=114.9

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+++..... ......+.+.++.+.+.+++....    .....++++||||+..|++.++..      
T Consensus        49 h~~p~v~~a~~~ql~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~----~~~v~f~~sGseA~e~AlklAr~~------  117 (420)
T TIGR00700        49 HSHPRVVDAVRTQVAEFTHTC-FMVTPYEGYVALAEKLNRIAPGSG----PKKSVFFNSGAEAVENAVKIARSY------  117 (420)
T ss_pred             CCCHHHHHHHHHHHHhccCcc-ccccCChHHHHHHHHHHHhCCCCC----CCEEEEeCCcHHHHHHHHHHHHHh------
Confidence            345788888887776432111 110112223356666777653211    124789999999999999998764      


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhhC--------C-----eeEEEEecCC----------ccccCHHHHHHHHh--
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFE--------V-----ELKEVKLEEG----------YYVMNPVKAVELVD--  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~G--------~-----~v~~v~~~~~----------~~~~d~~~L~~~i~--  200 (356)
                       .|    +++|+.-. ..|-...-+....|        .     ++..+|....          .+.-+++.+++.+.  
T Consensus       118 -tg----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (420)
T TIGR00700       118 -TG----RPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVID  192 (420)
T ss_pred             -cC----CCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhh
Confidence             11    34555444 44443322232211        1     1344444210          01112566777663  


Q ss_pred             ---hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEE
Q 018437          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSI  271 (356)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~  271 (356)
                         ++..+|++.-....+|.+-+    +++|.++|++|      ++++++|++|.++...   .. .+.+.  -...|.+
T Consensus       193 ~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~------gillI~DEV~tg~gr~---g~-~~a~~~~~~~pDi~  262 (420)
T TIGR00700       193 VGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREH------GIVFIADEVQTGFART---GA-MFACEHEGPEPDLI  262 (420)
T ss_pred             cCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEEecccCCccc---ch-hHHHhhcCCCCCEE
Confidence               34667777666666677644    89999999999      9999999999875331   10 11111  1135655


Q ss_pred             EEcCCcCCCCCcCeeEEEEeC
Q 018437          272 NVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       272 ~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +  .-|.+.+.+.+|+++.++
T Consensus       263 ~--lsK~l~~G~pig~v~~~~  281 (420)
T TIGR00700       263 T--TAKSLADGLPLSGVTGRA  281 (420)
T ss_pred             E--eeccccCCcceEEEEecH
Confidence            5  568877778889998764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06105 aminotransferase; Provisional

Probab=98.68  E-value=3.2e-06  Score=83.46  Aligned_cols=204  Identities=11%  Similarity=-0.029  Sum_probs=113.7

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++........+......+.++.+.+.+++..+.     ....++++|+||+..|++.++..... + 
T Consensus        64 h~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGseAve~AlKlar~~~~~-~-  136 (460)
T PRK06105         64 FSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPM-----SKVFFTNSGSEANDTVVKLVWYYNNA-L-  136 (460)
T ss_pred             CCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHh-c-
Confidence            3457888888887764322111111223444566777888764321     24789999999999999998754211 1 


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHHhhCC------------eeEEEEecCCccc-------------cCHHHHHHHHh
Q 018437          147 EQGKPYDKPNIVT-GANVQVCWEKFARYFEV------------ELKEVKLEEGYYV-------------MNPVKAVELVD  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~-s~~~h~s~~~~~~~~G~------------~v~~v~~~~~~~~-------------~d~~~L~~~i~  200 (356)
                        |.. .+.+|+. ....|-...-+....|.            .+..+|.... ++             -..+++++.+.
T Consensus       137 --g~t-~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~le~~~~  212 (460)
T PRK06105        137 --GRP-EKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHY-YRFGLPGESEEAFATRLANELEALIL  212 (460)
T ss_pred             --CCC-CCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcc-cccccCCCChHHHHHHHHHHHHHHHH
Confidence              111 1345554 34445443332222221            1233332210 11             12356777773


Q ss_pred             ----hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccc-cccCCCCcccccCCCceEE
Q 018437          201 ----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDLEWDFRLPLVKSI  271 (356)
Q Consensus       201 ----~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~~~~~Ds~  271 (356)
                          ++..+|++--....-|.+.+    ++++.++|++|      |+++++|+++.|+.. .-+......++   ..|.+
T Consensus       213 ~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~------~~llI~DEv~tG~GRtG~~f~~~~~~v---~PDi~  283 (460)
T PRK06105        213 AEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKY------DILLVADEVICGFGRTGNMFGCETFGI---KPDIL  283 (460)
T ss_pred             HcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCeEEEeccccCCCcCchhhhHHhcCC---CCCee
Confidence                24566666655555576656    89999999999      999999999965432 10000001111   35766


Q ss_pred             EEcCCcCCCCC-cCeeEEEEeC
Q 018437          272 NVSGHKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       272 ~~~~hK~l~~P-~g~g~l~~~~  292 (356)
                      ++  -|.+.+. ...|.++.++
T Consensus       284 ~~--gK~lggG~~P~~av~~~~  303 (460)
T PRK06105        284 VM--SKQLSSSYQPLSAVLMNE  303 (460)
T ss_pred             ee--ecccccCcccceEEEEcH
Confidence            64  4876654 2567777764

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=98.68  E-value=3.3e-06  Score=82.79  Aligned_cols=193  Identities=10%  Similarity=-0.023  Sum_probs=114.1

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+.........  ...+...++.+.+++++..+.     ....++++||||+..|++.+|....+   
T Consensus        91 h~hp~v~~Av~~ql~~l~~~~~~--~~~~~~~~lAe~L~~~~p~~~-----~~v~f~~SGsEA~e~AlklAr~~t~~---  160 (442)
T TIGR03372        91 HRNPNVIAAVENQLAKQPLHSQE--LLDPLRALLAKTLAALTPGKL-----KYSFFCNSGTESVEAALKLAKAYQSP---  160 (442)
T ss_pred             CCCHHHHHHHHHHHHhCCCcccc--cCCHHHHHHHHHHHHhCCCCc-----CEEEEeCCchHHHHHHHHHHHHHHhh---
Confidence            44578888888776542222111  112334466677777764321     23789999999999999999875311   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhCC------------eeEEEEecCCccccCHHHHHHHHh------hCceEEE
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV------------ELKEVKLEEGYYVMNPVKAVELVD------ENTICVA  207 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G~------------~v~~v~~~~~~~~~d~~~L~~~i~------~~~~~v~  207 (356)
                       .|    +.+|+.... .|-...-+....+-            .+..+|.+      |.+.+++.++      +++.+|+
T Consensus       161 -~g----r~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~------d~~~~~~~l~~~~~~~~~vAavI  229 (442)
T TIGR03372       161 -RG----KFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG------DIEAMLKALNECKKTGDDVAAII  229 (442)
T ss_pred             -cC----CcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC------CHHHHHHHHHHHhcCCCcEEEEE
Confidence             11    345665554 44433333322121            12333322      5667777664      2456677


Q ss_pred             EecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEcCCcCCCC
Q 018437          208 AILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHKYGLV  281 (356)
Q Consensus       208 ~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK~l~~  281 (356)
                      +-.....-|.+.|    ++++.++|++|      |+++++|+++.|+...   .. -+-+.  --..|.++  .-|.+++
T Consensus       230 vEpv~g~gG~~~p~~~yl~~l~~lc~~~------g~llI~DEV~tG~GRt---G~-~~a~e~~gv~PDivt--~gK~lg~  297 (442)
T TIGR03372       230 LEPIQGEGGVILPPEGYLPAVRALCDEF------GALLILDEVQTGMGRT---GK-MFACEHEGVQPDILC--LAKALGG  297 (442)
T ss_pred             EeCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeecccCCCcc---cc-chhhhhcCCCCCeee--ehhhhcC
Confidence            6666666677777    99999999999      9999999999764221   10 01111  11357666  4688765


Q ss_pred             C-cCeeEEEEeC
Q 018437          282 Y-AGVGWVVWRT  292 (356)
Q Consensus       282 P-~g~g~l~~~~  292 (356)
                      . ..+|.++.++
T Consensus       298 G~~Pigavv~~~  309 (442)
T TIGR03372       298 GVMPIGATIATE  309 (442)
T ss_pred             CcccceEEEecH
Confidence            5 3567777664

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK06062 hypothetical protein; Provisional

Probab=98.68  E-value=3.1e-06  Score=83.33  Aligned_cols=197  Identities=10%  Similarity=-0.019  Sum_probs=115.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++........+  ..+...++.+.+.++...+.     ..+.++++||||+..|++.+|...     
T Consensus        69 h~~p~v~~Ai~~q~~~~~~~~~~~--~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGsEAve~AlklAr~~t-----  136 (451)
T PRK06062         69 HQHPKVVAAIQEQAARLCTVAPAH--ANDARSEAARLIAERAPGDL-----SKVFFTNGGADANEHAVRMARLHT-----  136 (451)
T ss_pred             CCCHHHHHHHHHHHHhcCCcCCcc--CCHHHHHHHHHHHHhCCCCC-----CEEEEcCChHHHHHHHHHHHHHhh-----
Confidence            345788888887776432211111  23334466677777764221     247899999999999999997641     


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhCC-----------eeEEEEecCCccc------cC-------HHHHHHHHh-
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV-----------ELKEVKLEEGYYV------MN-------PVKAVELVD-  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G~-----------~v~~v~~~~~~~~------~d-------~~~L~~~i~-  200 (356)
                        |    +.+|+.-.. .|-...-+....|.           ++..++... .++      -|       ++.|++.++ 
T Consensus       137 --g----r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~le~~l~~  209 (451)
T PRK06062        137 --G----RPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPF-LYRSEFHATTEEEECERALAHLERVIEL  209 (451)
T ss_pred             --C----CceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCC-ccccccCCCChHHHHHHHHHHHHHHHHh
Confidence              1    345665544 34333333322221           123333221 011      12       577888885 


Q ss_pred             ---hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEE
Q 018437          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (356)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~  273 (356)
                         ++..+|++--....-|.+.|    +++|.++|+++      |+++|+|+++.|+...  ..-...+..--..|.+++
T Consensus       210 ~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~------g~lLI~DEV~tGfGRt--G~~~a~~~~gv~PDi~t~  281 (451)
T PRK06062        210 EGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRH------GIVLIADEVMAGFGRT--GKWFAIEHFGVVPDLITF  281 (451)
T ss_pred             cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc------CCEEEeeccccCCCcC--cHHHHHHhcCCCCCeeee
Confidence               23566766665555677777    99999999999      9999999999874321  000000101114576664


Q ss_pred             cCCcCCCCCc-CeeEEEEeC
Q 018437          274 SGHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       274 ~~hK~l~~P~-g~g~l~~~~  292 (356)
                        -|.+.+.+ .+|.++.++
T Consensus       282 --gK~lggG~~Pigav~~~~  299 (451)
T PRK06062        282 --AKGVNSGYVPLGGVAISE  299 (451)
T ss_pred             --chhhhcCCcCcEEEEEcH
Confidence              68877654 567777765

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=98.67  E-value=7.7e-06  Score=79.98  Aligned_cols=198  Identities=12%  Similarity=-0.002  Sum_probs=112.8

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++...... ......+...++.+.+.+++.-+.    .....++++||||+..|++.++..      
T Consensus        56 h~~p~v~~ai~~ql~~l~~~~-~~~~~~~~~~~la~~l~~~~p~~~----~~~v~f~~SGseA~e~AlklAr~~------  124 (425)
T PRK07495         56 HRHPRVIAAVKAQLDRFTHTC-HQVVPYENYVRLAERLNALVPGDF----AKKTIFVTTGAEAVENAVKIARAA------  124 (425)
T ss_pred             CCCHHHHHHHHHHHhhccCcc-cCccCCHHHHHHHHHHHHhCCCCC----CCEEEECCchHHHHHHHHHHHHHh------
Confidence            445788888887776432111 111112334456667777764221    024789999999999999998764      


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhC-------------CeeEEEEecCCccccC----HHHHHHHHh-----hCc
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLEEGYYVMN----PVKAVELVD-----ENT  203 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G-------------~~v~~v~~~~~~~~~d----~~~L~~~i~-----~~~  203 (356)
                       .|    +++|+.-.. .|-...-+....|             -.+..+|.+.....++    ++++++.+.     ++.
T Consensus       125 -tg----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~i  199 (425)
T PRK07495        125 -TG----RSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRV  199 (425)
T ss_pred             -hC----CCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCce
Confidence             11    345665443 3433222211111             1245566542111122    445577664     245


Q ss_pred             eEEEEecCCCcccccC----CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEcCCc
Q 018437          204 ICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHK  277 (356)
Q Consensus       204 ~~v~~~~~~~~tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK  277 (356)
                      .+|++.-.....|.+.    -+++|.++|++|      |+++++|+++.++..   .... +.+.  --..|.+++  -|
T Consensus       200 aavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tG~gr---~G~~-~a~~~~gv~pDi~tl--sK  267 (425)
T PRK07495        200 AAIIIEPVQGEGGFYPAPAAFMKALRELCDQH------GILLIADEVQTGFAR---TGKL-FAMEHHEVAADLTTM--AK  267 (425)
T ss_pred             EEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhcCCc---CCCc-eeecccCCCCCEEee--hh
Confidence            6666665555556442    378999999999      999999999987432   1111 1111  113465554  58


Q ss_pred             CCCCCcCeeEEEEeC
Q 018437          278 YGLVYAGVGWVVWRT  292 (356)
Q Consensus       278 ~l~~P~g~g~l~~~~  292 (356)
                      .+.+...+|+++.++
T Consensus       268 ~l~~G~pigav~~~~  282 (425)
T PRK07495        268 GLAGGFPLAAVTGRA  282 (425)
T ss_pred             hhcCCccceEEEEcH
Confidence            776666788888764

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.67  E-value=4.9e-06  Score=78.95  Aligned_cols=204  Identities=13%  Similarity=-0.040  Sum_probs=117.0

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.++....... .........++.+++.++++-..     ....++++|++|+..|++.++..+.+.. .
T Consensus        33 ~~p~i~~ai~~~~~~~~~~~~-~~~~~~~~~~la~~L~~~~p~~~-----~~v~f~~sGseAve~Alkla~~~~~~~~-~  105 (339)
T PF00202_consen   33 NHPEIAEAIAEQANKLNYVSF-SGFTHPEAAELAEKLAELFPGGL-----DRVFFANSGSEAVEAALKLARQYHNKRA-Y  105 (339)
T ss_dssp             T-HHHHHHHHHHHHHCSSCST-TTSEEHHHHHHHHHHHHHSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHHHTH-H
T ss_pred             CccccchhHHHHhhhcccccc-cceeccchhhhhhhhhhcccccc-----ceeeeccCchHHHHHHHHHhhccccccc-c
Confidence            347888888877764322221 11122334467777888883321     3478999999999999999984433211 1


Q ss_pred             cCCCCCCCeEEecCCC-cchHHHHHHhhC------------CeeEEEEecCCccc-----cCHHHHHHHH----hhCceE
Q 018437          148 QGKPYDKPNIVTGANV-QVCWEKFARYFE------------VELKEVKLEEGYYV-----MNPVKAVELV----DENTIC  205 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~-h~s~~~~~~~~G------------~~v~~v~~~~~~~~-----~d~~~L~~~i----~~~~~~  205 (356)
                      .+    +.+|+.-..+ |-...-++...+            -.+..+|.+.. ..     -..+.+++.+    .++..+
T Consensus       106 ~~----r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iaa  180 (339)
T PF00202_consen  106 TG----RRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDP-AADEEEQACLNALEELIAALNADEIAA  180 (339)
T ss_dssp             HT----TTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCH-HHHHHHHHHHHHHHHHHHHHHGGGEEE
T ss_pred             cC----CceEEEeeeeeeccCcccccccCCccccccccccccccccccCCcc-chhhhHHHHHHHHHHHHHhhcCCcEEE
Confidence            11    3566655444 432222222111            23567777531 11     1122233332    234566


Q ss_pred             EEEecCCCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCC
Q 018437          206 VAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV  281 (356)
Q Consensus       206 v~~~~~~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~  281 (356)
                      |++.-.....|.+    +-+++|.++|+++      |+++++|+++.|+..  ...-...+..-...|.++++  |.+.+
T Consensus       181 vivEPi~g~~G~~~~~~~~l~~l~~lc~~~------gillI~DEV~tG~gR--tG~~~a~~~~gv~PDiv~~g--K~l~g  250 (339)
T PF00202_consen  181 VIVEPIQGEGGMIPPPPEYLRELRELCREH------GILLIADEVQTGFGR--TGKFFASEHYGVDPDIVTFG--KGLGG  250 (339)
T ss_dssp             EEEESSBTTTTSBEE-TTHHHHHHHHHHHT------T-EEEEEETTTTTTT--TSSSSGHHHHTSSSSEEEEE--GGGGT
T ss_pred             EEEeccccccCccccccchhhehccccccc------ccceecccccccccc--cCCccceecccccCcccccc--cchhh
Confidence            6666655555654    2379999999999      999999999987533  11100111112246999886  88777


Q ss_pred             CcCeeEEEEeCC
Q 018437          282 YAGVGWVVWRTK  293 (356)
Q Consensus       282 P~g~g~l~~~~~  293 (356)
                      ....|.++.+++
T Consensus       251 G~p~sav~~~~~  262 (339)
T PF00202_consen  251 GLPISAVLGSEE  262 (339)
T ss_dssp             TSSEEEEEEEHH
T ss_pred             hhhcccccccch
Confidence            788899998753

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=98.67  E-value=4.6e-06  Score=80.75  Aligned_cols=232  Identities=12%  Similarity=-0.046  Sum_probs=133.9

Q ss_pred             CChHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +.+|.+.+++.+-+.. +..+......  +...++.+.+.+++..+.    .....++++|+|||-.|++.+|...    
T Consensus        72 H~hP~Vv~Av~~q~~~~~h~~~~~~~~--e~~v~~ae~L~~~~p~~~----~~~~~f~~sGaeA~E~AiKiAr~~T----  141 (447)
T COG0160          72 HNHPRVVEAVKRQLAKLNHTHTRDLYY--EPYVELAEKLTALAPGSG----LKKVFFGNSGAEAVEAAIKIARAYT----  141 (447)
T ss_pred             CCCHHHHHHHHHHHHHhhcccCCcccc--hhHHHHHHHHHHhCCccc----CCeEEecCCcHHHHHHHHHHHHHHh----
Confidence            3458888888765543 1111111111  223345555666654431    1337899999999999999998752    


Q ss_pred             HhcCCCCCCCeEEe-cCCCcchHHHHHHhhC-------------CeeEEEEecCC-c--c--------ccCHHHHHHHHh
Q 018437          146 KEQGKPYDKPNIVT-GANVQVCWEKFARYFE-------------VELKEVKLEEG-Y--Y--------VMNPVKAVELVD  200 (356)
Q Consensus       146 ~~~g~~~~~~~vi~-s~~~h~s~~~~~~~~G-------------~~v~~v~~~~~-~--~--------~~d~~~L~~~i~  200 (356)
                             ++..||. ....|-...-++.+.|             ..|..+|.... .  +        .-..+.++..+.
T Consensus       142 -------gr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~  214 (447)
T COG0160         142 -------GRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALF  214 (447)
T ss_pred             -------CCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHH
Confidence                   1345554 4455555444444332             22677776431 1  1        112344555453


Q ss_pred             h------CceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCc
Q 018437          201 E------NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLV  268 (356)
Q Consensus       201 ~------~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~  268 (356)
                      +      ++.++++--....-|.+.|    ++++.++|++|      |+++|+|++|.|+...  .  .-+.+.  ---.
T Consensus       215 ~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~------gillI~DEVQtG~GRT--G--~~fa~E~~gv~P  284 (447)
T COG0160         215 DLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREH------GILLIADEVQTGFGRT--G--KMFAFEHFGVEP  284 (447)
T ss_pred             hhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCCcc--c--cchhhhhcCCCC
Confidence            2      4678888888888787743    78999999999      9999999999886541  1  112222  1146


Q ss_pred             eEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHH
Q 018437          269 KSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEE  339 (356)
Q Consensus       269 Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G  339 (356)
                      |.++++  |-+++....|.++.|.+ .. .       |..+.. ..|+.|. +. ..++..++|+.+-.++
T Consensus       285 Divt~a--K~ig~G~Pl~avv~r~e-i~-~-------~~~g~~-~~Tf~GN-pv-a~Aaa~AvL~vie~e~  341 (447)
T COG0160         285 DIVTLA--KSLGGGLPLSAVVGRAE-IM-D-------WPPGGH-GGTFGGN-PV-ACAAALAVLDVIEEEN  341 (447)
T ss_pred             CEEEec--ccccCCCceeEEeccHH-hc-c-------cCCccc-CCCCCcC-HH-HHHHHHHHHHHHHHcc
Confidence            888754  87777778888887643 21 1       111111 1122222 23 3556667888776664

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=98.66  E-value=3.8e-06  Score=82.66  Aligned_cols=197  Identities=13%  Similarity=0.022  Sum_probs=113.7

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++......... ...+.+.++.+.+++++....    ...+.++++|+||+..|++.+|...     
T Consensus        58 H~~p~v~~Ai~~ql~~~~~~~~~~-~~~~~~~~lae~L~~~~p~~~----~~~v~f~~SGseA~e~AiklAr~~t-----  127 (445)
T PRK08593         58 HAPPRVVEAIKAQADKFIHYTPAY-MYHEPLVRLAKKLCELAPGDF----EKRVTFGLSGSDANDGIIKFARAYT-----  127 (445)
T ss_pred             CCCHHHHHHHHHHHHhccCccccc-cCCHHHHHHHHHHHHhCCCCC----CCEEEECCchHHHHHHHHHHHHHhh-----
Confidence            345888888887776432211110 112344466677887764321    0247899999999999999987641     


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhhC-------------CeeEEEEecCCccc-----cC-------HHHHHHHHh
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFE-------------VELKEVKLEEGYYV-----MN-------PVKAVELVD  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~G-------------~~v~~v~~~~~~~~-----~d-------~~~L~~~i~  200 (356)
                        |    +.+|+.-. ..|-...-++...+             -++..+|.... .+     .+       ++++++.+.
T Consensus       128 --g----r~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~  200 (445)
T PRK08593        128 --G----RPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDK-YRGMYEEPDANFVEEYLAPLKEMFE  200 (445)
T ss_pred             --C----CCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCcc-ccccccCCcHHHHHHHHHHHHHHHH
Confidence              1    34565544 44544333332222             12444554321 11     11       244555443


Q ss_pred             -----hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cc-cccCCCce
Q 018437          201 -----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EW-DFRLPLVK  269 (356)
Q Consensus       201 -----~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~-~~~~~~~D  269 (356)
                           +++.+|++.-.....|.+.|    +++|.++|++|      |+++++|+++.++...   ... .. .+.+ ..|
T Consensus       201 ~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~------g~llI~DEv~tg~Grt---G~~~a~~~~gv-~pD  270 (445)
T PRK08593        201 KYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREH------GILFAVDDIQQGLGRT---GKWSSISHFNI-TPD  270 (445)
T ss_pred             hhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhCCCcC---chHHHHHhcCC-CCC
Confidence                 35667777776666677756    89999999999      9999999998664220   100 00 1111 346


Q ss_pred             EEEEcCCcCCCCCcCeeEEEEeC
Q 018437          270 SINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       270 s~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      .++  .-|.+.+.+..|+++.++
T Consensus       271 i~t--~gK~l~~G~p~gav~~~~  291 (445)
T PRK08593        271 LMS--FGKSLAGGMPMSAIVGRK  291 (445)
T ss_pred             Eee--ecccccCCcccEEEEEcH
Confidence            665  458766556678887764

>PRK05965 hypothetical protein; Provisional

Probab=98.65  E-value=6.3e-06  Score=81.38  Aligned_cols=207  Identities=12%  Similarity=0.002  Sum_probs=115.8

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++........+....+...++.+.+.+++..+.     ....++++||||+..|++.+|..+..   
T Consensus        62 h~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGSEAve~AlKlAr~~~~~---  133 (459)
T PRK05965         62 YGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSL-----NHVYFTLGGSDAVDSAVRFIRHYWNA---  133 (459)
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCc-----CEEEEeCChhHHHHHHHHHHHHHHHh---
Confidence            3458888888887764322111111122333456677777753221     24789999999999999999876421   


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhhCC------------eeEEEEecCC-c--cccC--------HHHHHHHHh--
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFEV------------ELKEVKLEEG-Y--YVMN--------PVKAVELVD--  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~G~------------~v~~v~~~~~-~--~~~d--------~~~L~~~i~--  200 (356)
                       .|.. .+.+||.-. ..|-...-+....|.            .+..+|.... .  +.-|        ++++++.+.  
T Consensus       134 -~g~~-~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  211 (459)
T PRK05965        134 -TGRP-SKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL  211 (459)
T ss_pred             -cCCC-CccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc
Confidence             1211 134565444 444432222222111            1234443210 0  0113        256777775  


Q ss_pred             --hCceEEEEecCCCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEc
Q 018437          201 --ENTICVAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (356)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~  274 (356)
                        ++..+|++.-.....|.+    +-+++|.++|++|      |+++|+|+++.|+...  ..-...+..--..|.+++ 
T Consensus       212 ~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~------gillI~DEV~tGfGRt--G~~~a~~~~gv~PDiv~~-  282 (459)
T PRK05965        212 GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACREL------GILFVADEVITGFGRT--GPLFACEAEGVVPDLMTV-  282 (459)
T ss_pred             CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhccCccC--chhhhHhhcCCCCCeEEe-
Confidence              345667666555555654    3378999999999      9999999999875321  000001111113677775 


Q ss_pred             CCcCCCCCc-CeeEEEEeCC
Q 018437          275 GHKYGLVYA-GVGWVVWRTK  293 (356)
Q Consensus       275 ~hK~l~~P~-g~g~l~~~~~  293 (356)
                       -|.+.+.+ ..|.++.+++
T Consensus       283 -gKgl~gG~~Pi~av~~~~~  301 (459)
T PRK05965        283 -AKGLTSGYVPMGAVLMSDH  301 (459)
T ss_pred             -chhhccCCcceeEEEEcHH
Confidence             48776664 6788887643

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.65  E-value=3.8e-07  Score=84.79  Aligned_cols=211  Identities=14%  Similarity=0.072  Sum_probs=133.7

Q ss_pred             HHHHhhhcCCCC-cccccccCC------CChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHH-hCCCCCC--
Q 018437           46 INDELMLDGNPR-LNLASFVTT------WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHL-FNTPVAD--  114 (356)
Q Consensus        46 ~~~~~~~~~~~~-~~l~~~~~~------~~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l-~g~~~~~--  114 (356)
                      +.+.+..+..|. .||+.++.-      +.-+.|.++-....++- ...|-.-.+...+.++    ++++ ||.+.+.  
T Consensus        16 L~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~----~~~llFG~d~~~l~   91 (396)
T COG1448          16 LKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEA----VQKLLFGADSPALA   91 (396)
T ss_pred             HHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHH----HHHHhcCCCcHHHH
Confidence            344444454444 465544322      12245555443333322 1223333355555555    4443 6655321  


Q ss_pred             CCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEe-cCCccccCHH
Q 018437          115 DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPV  193 (356)
Q Consensus       115 ~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~  193 (356)
                      ......+-|.|||.|+..+.-.+.+..           ....|.+|+|+|..........|+++...|. |.++..+|.+
T Consensus        92 ~~Rv~t~Qt~GGTGAL~~~A~fl~~~~-----------~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~  160 (396)
T COG1448          92 EDRVATVQTLGGTGALRVAADFLARFF-----------PDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFD  160 (396)
T ss_pred             hhhHhheecCCcchHHHHHHHHHHHhC-----------CCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHH
Confidence            123456889999999988876665431           1347999999999999999999999999997 5555679999


Q ss_pred             HHHHHHhh---CceEEEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc---
Q 018437          194 KAVELVDE---NTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR---  264 (356)
Q Consensus       194 ~L~~~i~~---~~~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~---  264 (356)
                      .+.+.+.+   +..++.=.+.+||||.-   +.+++|.++.++.      +..-++|-||-||.-..-.+  ...++   
T Consensus       161 ~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r------~lip~~D~AYQGF~~GleeD--a~~lR~~a  232 (396)
T COG1448         161 GMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKER------GLIPFFDIAYQGFADGLEED--AYALRLFA  232 (396)
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc------CCeeeeehhhhhhccchHHH--HHHHHHHH
Confidence            98888864   34455566788999975   5678899999999      99999999998765431111  11111   


Q ss_pred             CCCc-eEEEEcCCcCC
Q 018437          265 LPLV-KSINVSGHKYG  279 (356)
Q Consensus       265 ~~~~-Ds~~~~~hK~l  279 (356)
                      ..+. -.++.|+.|.+
T Consensus       233 ~~~~~~lva~S~SKnf  248 (396)
T COG1448         233 EVGPELLVASSFSKNF  248 (396)
T ss_pred             HhCCcEEEEehhhhhh
Confidence            1122 46667788975

>PRK07481 hypothetical protein; Provisional

Probab=98.64  E-value=8.3e-06  Score=80.34  Aligned_cols=206  Identities=10%  Similarity=0.028  Sum_probs=113.2

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+................+.++.+.+.++++-+.    .....++++||||+..|++.+|.....   
T Consensus        58 h~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~----~~~v~f~~sGsEAve~AlklAr~~~~~---  130 (449)
T PRK07481         58 HNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEG----MRRVFFSSGGSDSVETALKLARQYWKV---  130 (449)
T ss_pred             CCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCC----CCEEEEcCchHHHHHHHHHHHHHHHHh---
Confidence            3457888888877764322111101122344567777888764211    124789999999999999999876421   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhC------------CeeEEEEecCC---ccc-cCHHH--------HHHHHh-
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEG---YYV-MNPVK--------AVELVD-  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~---~~~-~d~~~--------L~~~i~-  200 (356)
                       .|.. .+.+|+.-.. .|-...-++...|            -++..++.+..   .+. -|++.        |++.+. 
T Consensus       131 -~g~~-~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~  208 (449)
T PRK07481        131 -RGQP-ERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAF  208 (449)
T ss_pred             -cCCC-CCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence             1211 1345554444 4433222222111            12333432210   011 13433        344443 


Q ss_pred             ---hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEeccccccccc-ccCCCCcccccCCCceEEE
Q 018437          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP-FLYPDLEWDFRLPLVKSIN  272 (356)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~-~~~~~~~~~~~~~~~Ds~~  272 (356)
                         +++.+|++--.....|.+-+    ++++.++|+++      |+++|+|+++.|+... -+.....+++   ..|.++
T Consensus       209 ~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~------g~llI~DEV~tGfGRtG~~~a~~~~gv---~PDiv~  279 (449)
T PRK07481        209 QGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRH------GILLIADEVVTGFGRTGSWFGSRGWGV---KPDIMC  279 (449)
T ss_pred             cCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHc------CCEEEEeehhhCcCcCchhhHhhhcCC---CCCEEE
Confidence               34667776666555566543    89999999999      9999999998775321 0000001122   367777


Q ss_pred             EcCCcCCCCCc-CeeEEEEeC
Q 018437          273 VSGHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       273 ~~~hK~l~~P~-g~g~l~~~~  292 (356)
                      +  -|.+.+.+ .+|.++.++
T Consensus       280 ~--gKgl~gG~~Pi~av~~~~  298 (449)
T PRK07481        280 L--AKGITSGYVPLGATMVNA  298 (449)
T ss_pred             E--eecccCCCcCceEEEEcH
Confidence            5  58776553 577887765

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=98.64  E-value=3.7e-06  Score=82.18  Aligned_cols=197  Identities=12%  Similarity=-0.053  Sum_probs=113.1

Q ss_pred             CChHHHHHHHHHHhcccCCC-cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +.+|.+.+++.+.++..... ...++  .....++.+.+.+++....    .....++++||||+..|++.++...    
T Consensus        56 h~~p~v~~ai~~ql~~~~~~~~~~~~--~~~~~~la~~l~~~~p~~~----~~~~~f~~sGseA~e~AlklAr~~t----  125 (421)
T PRK06777         56 HRHPKVVAAVRQQLDQFTHTAYQIVP--YASYVTLAERINALAPIDG----PAKTAFFTTGAEAVENAVKIARAYT----  125 (421)
T ss_pred             CCCHHHHHHHHHHHhhcccccccccC--ChHHHHHHHHHHHhCCCCC----CceEEEeCCcHHHHHHHHHHHHHhh----
Confidence            44578888888777643211 11111  2223355666777754321    1247889999999999999997641    


Q ss_pred             HhcCCCCCCCeEEecCC-CcchHHHHHHhhCC-------------eeEEEEecCCc----cccCHHHHHHHHh-----hC
Q 018437          146 KEQGKPYDKPNIVTGAN-VQVCWEKFARYFEV-------------ELKEVKLEEGY----YVMNPVKAVELVD-----EN  202 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G~-------------~v~~v~~~~~~----~~~d~~~L~~~i~-----~~  202 (356)
                         |    +++|+.-.. .|-...-++...|.             .+..+|.....    ..-+++.+++.+.     ++
T Consensus       126 ---g----r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (421)
T PRK06777        126 ---G----RPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQ  198 (421)
T ss_pred             ---C----CCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCc
Confidence               1    345665443 44433333322221             12333332110    1123667888775     24


Q ss_pred             ceEEEEecCCCccccc-CC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEcCC
Q 018437          203 TICVAAILGSTLTGEF-ED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGH  276 (356)
Q Consensus       203 ~~~v~~~~~~~~tG~~-~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~h  276 (356)
                      ..+|++.-.....|.. -|   +++|.++|+++      |+++++|++|.++..  . .. .+.+.  ....|.++  .-
T Consensus       199 iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEv~tg~gr--~-g~-~~~~~~~~~~pDiv~--~s  266 (421)
T PRK06777        199 VAAILLEPIQGEGGFNVAPPEFMSALRTLCDEH------GILLIADEVQTGFAR--T-GK-LFAMEYYDVKPDLIT--MA  266 (421)
T ss_pred             eEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCcc--C-Cc-hhhhhhcCCCCCEEe--ee
Confidence            5667666666666643 33   89999999999      999999999987432  1 11 11111  11356554  56


Q ss_pred             cCCCCCcCeeEEEEeC
Q 018437          277 KYGLVYAGVGWVVWRT  292 (356)
Q Consensus       277 K~l~~P~g~g~l~~~~  292 (356)
                      |.+.+.+.+|+++.++
T Consensus       267 K~l~~G~pigav~~~~  282 (421)
T PRK06777        267 KSLGGGMPISAVVGRA  282 (421)
T ss_pred             hhhcCCCceEEEEEcH
Confidence            8776667789988764

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=98.61  E-value=8.6e-06  Score=80.10  Aligned_cols=202  Identities=10%  Similarity=0.036  Sum_probs=113.2

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++........ ....+...++.+.+.+++......  .....++++||||+..|++.++..      
T Consensus        55 h~~p~i~~ai~~q~~~~~~~~~~-~~~~~~~~~lae~L~~~~p~~~~~--~~~~f~~~sGsEA~e~AlklAr~~------  125 (442)
T TIGR00709        55 HNHPNMKQKILDYLQSGLPLHTL-DLTTPLKDAFIEALLNIIPKRKMD--YKLQFPGPSGADAVEAAIKLAKTY------  125 (442)
T ss_pred             CCCHHHHHHHHHHHHhccCcccc-ccCcHHHHHHHHHHHHhCCCcCCC--ccEEEeCCCHHHHHHHHHHHHHHh------
Confidence            44578888888777643211111 111234446667788876432100  012344589999999999999864      


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhhC------------CeeEEEEecCCcccc--------CH----HHHHHHHh-
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFE------------VELKEVKLEEGYYVM--------NP----VKAVELVD-  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~G------------~~v~~v~~~~~~~~~--------d~----~~L~~~i~-  200 (356)
                       .|    +.+|+.-. ..|-...-+....|            .++..+|... ..+.        +.    +.+++.++ 
T Consensus       126 -tg----r~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (442)
T TIGR00709       126 -TG----RTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPH-EYRCPFGIGGEAGSNASIEYFENFIED  199 (442)
T ss_pred             -cC----CCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCc-cccccccCCchhHHHHHHHHHHHHHHh
Confidence             11    34566544 44444333333222            1244444422 1121        11    22344443 


Q ss_pred             -----hCceEEEEecCCCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEE
Q 018437          201 -----ENTICVAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSI  271 (356)
Q Consensus       201 -----~~~~~v~~~~~~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~  271 (356)
                           +++.+|++.......|.+    +-+++|.++|++|      |+++|+|+++.|+...  ..-......-...|.+
T Consensus       200 ~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~------g~llI~DEV~tGfGRt--G~~~a~~~~gv~PDiv  271 (442)
T TIGR00709       200 VESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKH------DIKLILDEVQAGFGRS--GTMFAFEHAGIEPDFV  271 (442)
T ss_pred             hccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCCC--CchhHHHHcCCCCcEE
Confidence                 245667666666666655    3478999999999      9999999999875431  1000011011135777


Q ss_pred             EEcCCcCCCCCcCeeEEEEeCC
Q 018437          272 NVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       272 ~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      ++  -|.+.+.+.+|.++.+++
T Consensus       272 ~~--gK~l~~G~Pigav~~~~~  291 (442)
T TIGR00709       272 VM--SKAVGGGLPLAVLLIAPE  291 (442)
T ss_pred             EE--cccccCCcccEEEEEchH
Confidence            74  587666678899988654

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=98.61  E-value=1e-06  Score=81.95  Aligned_cols=179  Identities=13%  Similarity=-0.020  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHhcccCCCccc-------CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           69 EPECDKLVMASINKNYVDMDE-------YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~-------~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      +|.+.+++.+.++.+......       +.-...+|.+    +|+|-+-+.       ..+-++.-.||-..+..+.+..
T Consensus       187 Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~e----LA~LHqK~a-------ALlFsSCfVANDstLftLak~l  255 (570)
T KOG1360|consen  187 HPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAE----LADLHQKEA-------ALLFSSCFVANDSTLFTLAKKL  255 (570)
T ss_pred             ChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHH----HHHHhcCcc-------eeeeeeeeeccchHHHHHHHHC
Confidence            478999999999865332211       2233455555    888866653       2222333445555555554431


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh----CceEEEEecCCCcccc
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGE  217 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~  217 (356)
                      +           +-+|+.-+-.|.|.....+--+++  +.-..-+    |+++|++.++.    .|++|.+-...+..|.
T Consensus       256 p-----------gcei~SD~gNHASMI~GIrns~v~--K~IFrHN----D~~hL~~lL~~~~~svPKivAFEtVhSM~Ga  318 (570)
T KOG1360|consen  256 P-----------GCEIFSDEGNHASMIQGIRNSRVP--KHIFRHN----DLDHLEQLLQSSPKSVPKIVAFETVHSMDGA  318 (570)
T ss_pred             C-----------CcEEeccccchHHHHHHhhhcCCc--ceeeccC----CHHHHHHHHHhCCCCCCceEEEeeeeccCCC
Confidence            1           234444455688877766654443  2222222    88999999875    4789999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccC-CCCcccccCCCceEEEEcCCcCCCC
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLEWDFRLPLVKSINVSGHKYGLV  281 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~~~~~~~Ds~~~~~hK~l~~  281 (356)
                      +.||++|++++++|      |..-.+|+++.-+++.--. .-...+--+..+|.++-...|.+++
T Consensus       319 vcpleelcDvah~y------GAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc  377 (570)
T KOG1360|consen  319 VCPLEELCDVAHKY------GAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC  377 (570)
T ss_pred             cCCHHHHHHHHHHh------CceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc
Confidence            99999999999999      9999999987655442100 0001122256899999888897654

>PRK07036 hypothetical protein; Provisional

Probab=98.60  E-value=9e-06  Score=80.40  Aligned_cols=205  Identities=14%  Similarity=-0.003  Sum_probs=114.1

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.............+.+.++.+.+.+++..+.     ....++++||||+..|++.++..... + 
T Consensus        67 h~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGseAve~AlklAr~~~~~-~-  139 (466)
T PRK07036         67 YGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDL-----NHVFLTTGGSTAVDSALRFVHYYFNV-R-  139 (466)
T ss_pred             CCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCCchHHHHHHHHHHHHHHHh-c-
Confidence            3457888888877664211111100123344567777777753221     24789999999999999998764321 1 


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhhC------------CeeEEEEecCC---cccc--------CHHHHHHHHh--
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFE------------VELKEVKLEEG---YYVM--------NPVKAVELVD--  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~G------------~~v~~v~~~~~---~~~~--------d~~~L~~~i~--  200 (356)
                        |.. .+.+|+.-. ..|-...-+....|            ..+..+|....   ...+        .++.+++.+.  
T Consensus       140 --g~t-~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  216 (466)
T PRK07036        140 --GRP-AKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSL  216 (466)
T ss_pred             --CCC-CccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHc
Confidence              111 134565544 34433322222211            11344443210   0011        1244555554  


Q ss_pred             --hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEeccccccccc--ccCCCCcccccCCCceEEE
Q 018437          201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP--FLYPDLEWDFRLPLVKSIN  272 (356)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~--~~~~~~~~~~~~~~~Ds~~  272 (356)
                        +++.+|++--.....|.+.|    +++|.++|++|      |+++|+|+++.|+...  ++.-+..+.+   ..|.++
T Consensus       217 ~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~------g~llI~DEV~tGfGRtG~~~~~~~~~gv---~PDivt  287 (466)
T PRK07036        217 GADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRY------DILYISDEVVTGFGRLGHFFASEAVFGI---QPDIIT  287 (466)
T ss_pred             CCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeechhCCCcCchhhhhhhhcCC---CCCEEE
Confidence              34567777766666677655    89999999999      9999999999765321  0000001121   357776


Q ss_pred             EcCCcCCCCCc-CeeEEEEeC
Q 018437          273 VSGHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       273 ~~~hK~l~~P~-g~g~l~~~~  292 (356)
                      +  -|.+.+.+ .+|.++.++
T Consensus       288 ~--gK~l~gG~~Pi~av~~~~  306 (466)
T PRK07036        288 F--AKGLTSGYQPLGAVIISE  306 (466)
T ss_pred             E--ccccccCccccEEEEEcH
Confidence            5  58776653 578887764

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.56  E-value=2.5e-06  Score=78.57  Aligned_cols=236  Identities=16%  Similarity=0.198  Sum_probs=135.8

Q ss_pred             cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH
Q 018437           89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE  168 (356)
Q Consensus        89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~  168 (356)
                      .+.+...|.+    .+.+.||+.-       .+-|.-|-.|-..-+-.++.+        |....+.+.++++..|....
T Consensus        77 gsrs~~~L~~----avkdifGfq~-------~iPthQGRgAE~Il~~i~ik~--------~~~~pg~~~~~~sN~~FdTT  137 (471)
T COG3033          77 GSRSYYALAD----AVKDIFGFQY-------TIPTHQGRGAENILIPILIKK--------GEQEPGSKMVAFSNYHFDTT  137 (471)
T ss_pred             ccccHHHHHH----HHHHhcCcee-------eeeccCCccHHHHHHHHHhhh--------ccccCCccccccccceecch
Confidence            3444444544    4777888864       455665554443333333332        11112346667777776543


Q ss_pred             -HHHHhhCCeeEEEEecCC---------ccccCHHHHHHHHhh----CceEEEEecCCCcccc----cCCHHHHHHHHHH
Q 018437          169 -KFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDE----NTICVAAILGSTLTGE----FEDVKLLHDLLTK  230 (356)
Q Consensus       169 -~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~----~~~i~~I~~i~~~  230 (356)
                       --.+..|+.++-+++++.         .|.+|++.|++.|++    +...|+++--+|.-|.    +.+++++.++|++
T Consensus       138 r~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~k  217 (471)
T COG3033         138 RGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKK  217 (471)
T ss_pred             hHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHH
Confidence             334466888887777531         378999999999985    4556666655555453    3789999999999


Q ss_pred             hhhccCCCCcEEEecccc---cccccccCCCC-ccccc------CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCc--c
Q 018437          231 KNEETGWDTPIHVDAASG---GFIAPFLYPDL-EWDFR------LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP--D  298 (356)
Q Consensus       231 ~~~~~~~~~~l~vD~a~~---~~~~~~~~~~~-~~~~~------~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~--~  298 (356)
                      |      +++++.|+|--   .++.-.-.+.. .+.+.      ...+|.++.|+.|=++++.| |+++++|+..+.  .
T Consensus       218 y------~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gfl~~~D~~~fDvy~  290 (471)
T COG3033         218 Y------DIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GFLCFKDDSFFDVYE  290 (471)
T ss_pred             c------CCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cEEEecCccHHHHHH
Confidence            9      99999998731   11110000111 11111      34699999999999989998 999999875421  1


Q ss_pred             ccccccCCCCCCCCCccccCCCChhHHHHHHHHHH-HhCHHHHHHHHHHHHhccCcc
Q 018437          299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI-RLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~-~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ... ...-+..+.+++   |.-.+...-++...|. ....+-++.+++++..++..|
T Consensus       291 ~~~-~~~V~~eG~~tY---Ggl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l  343 (471)
T COG3033         291 ECR-TLVVVQEGFPTY---GGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGL  343 (471)
T ss_pred             HHH-hheEeecccccc---CcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            100 000111111222   2223333333333333 234556777777777776654

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.56  E-value=3.6e-06  Score=77.99  Aligned_cols=223  Identities=16%  Similarity=0.066  Sum_probs=134.4

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeC-ChhHHHHHHHHHHHHHHHHHHHhcCCCCCCC--eEEecCCCcch
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTV-GSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP--NIVTGANVQVC  166 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~-Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~--~vi~s~~~h~s  166 (356)
                      +.....+-.++.+.+++++++|.+    +.+.+.. |+|....++.+.+...             +.  .|....-+..+
T Consensus        45 sk~~~~v~~~a~~~lreLl~iPd~----Y~VlflqGGat~qf~~~p~nLl~~-------------~~~~yv~~g~Ws~~a  107 (365)
T COG1932          45 SKEFKNVLEEAEKDLRELLNIPDD----YKVLFLQGGATGQFAMAPMNLLGK-------------RGTDYVDTGAWSEFA  107 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCccHHHHHHHHHhhhcc-------------cCceeEeeeehhHhH
Confidence            345667777889999999999974    4565655 5667777777766542             12  24444444444


Q ss_pred             HHHHHHhhCC--eeEEEEecC--CccccCHHHHHHHHhhCceEEEEecCCCcccccCC-HHHHHHHHHHhhhccCCCCcE
Q 018437          167 WEKFARYFEV--ELKEVKLEE--GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED-VKLLHDLLTKKNEETGWDTPI  241 (356)
Q Consensus       167 ~~~~~~~~G~--~v~~v~~~~--~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~-i~~I~~i~~~~~~~~~~~~~l  241 (356)
                      +..+-+ ++-  .+..+...+  .....|++...  +.++...|..|+..|.+|+--+ ...+.           .+.++
T Consensus       108 ~~eA~~-~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~~~p~~~-----------~~~~~  173 (365)
T COG1932         108 IKEAKK-VGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVEVPELPDIG-----------SDGLL  173 (365)
T ss_pred             HHHHHH-hcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccceEccCCCCCC-----------CCceE
Confidence            444433 343  222222111  11334444433  4444556889999999998644 11111           03789


Q ss_pred             EEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccc----cccccCCCCCCCCCcccc
Q 018437          242 HVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE----LVFHINYLGSDQPTFTLN  317 (356)
Q Consensus       242 ~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  317 (356)
                      ++|+..+.+..       ++|+  ...|.+.++.+|.+ +|-|.+++++|++ .+.+.    ++.-..|..+.. .-.+.
T Consensus       174 v~D~SS~ilsr-------~iDv--sk~dviyagaQKnl-GpaGltvvIvr~~-~l~r~~~~~~P~if~y~~~~~-~~s~y  241 (365)
T COG1932         174 VADASSAILSR-------PIDV--SKYDVIYAGAQKNL-GPAGLTVVIVRPD-LLERAESYTLPSIFDYLTHAD-NGSMY  241 (365)
T ss_pred             EEecccHHhcC-------CCCh--hHcceEEEehhhcc-CccceEEEEEcHH-HHhcccccCCchHhhchhhhc-cCCcc
Confidence            99998776444       2444  47899999999998 8999999999865 32221    111123333322 12234


Q ss_pred             CCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          318 FSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       318 ~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                      .|++.....-+-..++.+-.. |++++.++..+.|+.|.
T Consensus       242 NTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY  280 (365)
T COG1932         242 NTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLY  280 (365)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            677776555555677766444 68889888888877653

>PRK07046 aminotransferase; Validated

Probab=98.54  E-value=8.7e-06  Score=80.20  Aligned_cols=188  Identities=10%  Similarity=-0.030  Sum_probs=113.4

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.++.....  ..  ..+.+.++.+.+.++++++       ...++++||||+..|++.+|..       
T Consensus        92 ~~p~i~~Av~~q~~~~~~~--~~--~~~~~~~lAe~l~~~~~~~-------~v~F~nSGtEA~e~AlrlAR~~-------  153 (453)
T PRK07046         92 SPAPVARALAEQARRGLTT--ML--PSEDAAWVGEELARRFGLP-------YWQVATTATDANRFVLRWARAV-------  153 (453)
T ss_pred             CCHHHHHHHHHHHHhCCCC--CC--CCHHHHHHHHHHHHHhCCC-------EEEEECCHHHHHHHHHHHHHHh-------
Confidence            3578888888877643221  11  2345667778888887654       2789999999999999999864       


Q ss_pred             cCCCCCCCeEEecC-CCcchHHHHHHh------------hCCee----EEEEecCCccccCHHHHHHHHhh-CceEEEEe
Q 018437          148 QGKPYDKPNIVTGA-NVQVCWEKFARY------------FEVEL----KEVKLEEGYYVMNPVKAVELVDE-NTICVAAI  209 (356)
Q Consensus       148 ~g~~~~~~~vi~s~-~~h~s~~~~~~~------------~G~~v----~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~  209 (356)
                      .|    +++|+.-. ..|-........            .|...    ..+.+.   + -|++.+++.+.. +..+|++-
T Consensus       154 TG----r~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~-nd~~~l~~~l~~~~vAavi~E  225 (453)
T PRK07046        154 TG----RPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE---F-NDLAALEAALADGDVAAVLAE  225 (453)
T ss_pred             hC----CCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC---C-CCHHHHHHHhCCCCeEEEEEC
Confidence            11    45566544 344332111110            01100    001111   1 178999998853 45666665


Q ss_pred             cCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCe
Q 018437          210 LGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV  285 (356)
Q Consensus       210 ~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~  285 (356)
                      -.....|.+-|    ++++.++|+++      |+++|+|+++. +-..+-.....+++   ..|.+++  -|.+++...+
T Consensus       226 Pi~g~~G~~~p~~~fl~~lr~lc~~~------g~llI~DEV~t-fr~g~Gg~~~~~gv---~PDi~t~--gK~lggG~Pi  293 (453)
T PRK07046        226 PAMTNIGMVLPEPGFHEALRELTRRY------GTLLVIDETHT-ISSGPGGYTRAHGL---EPDFLVV--GKPIAGGVPC  293 (453)
T ss_pred             CCCCCCCCcCCCHHHHHHHHHHHHHh------CCEEEEEcccc-CccCCcchhHHhCC---Cccceee--hhhhcCCCcc
Confidence            55545565533    79999999999      99999999985 11110010001122   3577764  6887777888


Q ss_pred             eEEEEeCC
Q 018437          286 GWVVWRTK  293 (356)
Q Consensus       286 g~l~~~~~  293 (356)
                      |.++.+++
T Consensus       294 ~av~g~~~  301 (453)
T PRK07046        294 AVYGFSAE  301 (453)
T ss_pred             eeeeehHH
Confidence            98887653

>PRK07480 putative aminotransferase; Validated

Probab=98.53  E-value=1.6e-05  Score=78.44  Aligned_cols=206  Identities=12%  Similarity=-0.074  Sum_probs=113.1

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++........+......+.++.+.++++++.+.     ....++++||||+..|++.+|..+..   
T Consensus        66 h~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGseA~e~AlklAr~~~~~---  137 (456)
T PRK07480         66 YGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGF-----NHVFFTNSGSEANDTVLRMVRHYWAL---  137 (456)
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHh---
Confidence            3457888888877764322211111223444567777888764321     24789999999999999999875422   


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhhCC------------eeEEEEecCC-c--cccC--------HHHHHHHHh--
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFEV------------ELKEVKLEEG-Y--YVMN--------PVKAVELVD--  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~G~------------~v~~v~~~~~-~--~~~d--------~~~L~~~i~--  200 (356)
                       .|.. .+.+|+.-. ..|-...-+....|.            .+..++.... .  ...+        ++.|++.+.  
T Consensus       138 -~g~~-~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  215 (456)
T PRK07480        138 -KGKP-QKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL  215 (456)
T ss_pred             -cCCC-CCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc
Confidence             1111 134565544 334332222222111            1222332110 0  0011        356665553  


Q ss_pred             --hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEc
Q 018437          201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (356)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~  274 (356)
                        +++.+|++--.....|.+.+    +++|.++|++|      |+++|+|+++.|+..  ...-...+..--..|.+++ 
T Consensus       216 ~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~------g~llI~DEV~tGfGR--tG~~~a~~~~gv~PDiv~~-  286 (456)
T PRK07480        216 GADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKY------DILLVADEVICGFGR--TGEWFGSQHFGIKPDLMTI-  286 (456)
T ss_pred             CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--CcchhhhhhcCCCCCeeee-
Confidence              34566776665555566655    89999999999      999999999976532  1100001111113576664 


Q ss_pred             CCcCCCCCc-CeeEEEEeC
Q 018437          275 GHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       275 ~hK~l~~P~-g~g~l~~~~  292 (356)
                       -|.+.+.+ .+|.++.++
T Consensus       287 -gK~l~gG~~Pi~av~~~~  304 (456)
T PRK07480        287 -AKGLTSGYIPMGAVGVGD  304 (456)
T ss_pred             -ehhhccCCccceEEEEcH
Confidence             58766543 467777764

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.53  E-value=8.9e-06  Score=80.16  Aligned_cols=206  Identities=13%  Similarity=-0.018  Sum_probs=116.1

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++........ ....+...++.+.++++++...     ....++++||||+..|++.++..+.. | 
T Consensus        70 h~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~lAe~L~~~~p~~~-----~~v~f~~sGseAve~AlKlA~~~~~~-r-  141 (453)
T PRK06943         70 HANPRINAALKDQLDTLEHAMLA-GCTHEPAIELAERLAALTGGTL-----GHAFFASDGASAVEIALKMSFHAWRN-R-  141 (453)
T ss_pred             CCCHHHHHHHHHHHHhcCCcccc-ccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCCHHHHHHHHHHHHHHHHH-h-
Confidence            34588888888777643221111 1112334466777777765331     24789999999999999999876432 1 


Q ss_pred             hcCCCCCCCeEEecCCC-cchHHHHHHhhC------------CeeEEEEecCCcc-----------ccCHHHHHHHHh--
Q 018437          147 EQGKPYDKPNIVTGANV-QVCWEKFARYFE------------VELKEVKLEEGYY-----------VMNPVKAVELVD--  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~-h~s~~~~~~~~G------------~~v~~v~~~~~~~-----------~~d~~~L~~~i~--  200 (356)
                        |.. .+.+||.-..+ |-...-+....|            ..+..+|.....+           .-+++++++.+.  
T Consensus       142 --g~~-~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  218 (453)
T PRK06943        142 --GRG-DKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAER  218 (453)
T ss_pred             --CCC-CCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhC
Confidence              111 13456654444 433222222221            1233444321100           013467777775  


Q ss_pred             -hCceEEEEec-CCCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEc
Q 018437          201 -ENTICVAAIL-GSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (356)
Q Consensus       201 -~~~~~v~~~~-~~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~  274 (356)
                       ++..+|++.- .....|.+    +-++++.++|++|      |+++|+|+++.|+...  ..-...+..--..|.+++ 
T Consensus       219 ~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~------gillI~DEV~TG~GRt--G~~fa~~~~gv~PDivt~-  289 (453)
T PRK06943        219 AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRY------GVHLIADEIAVGCGRT--GTFFACEQAGVWPDFLCL-  289 (453)
T ss_pred             CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHc------CCEEEeechhhCCCCC--cchhHHHhCCCCCCeEee-
Confidence             3455666554 24555654    2378999999999      9999999998775321  100000111114688886 


Q ss_pred             CCcCCCCCc-CeeEEEEeCC
Q 018437          275 GHKYGLVYA-GVGWVVWRTK  293 (356)
Q Consensus       275 ~hK~l~~P~-g~g~l~~~~~  293 (356)
                       -|.+.+.+ .+|.++.+++
T Consensus       290 -gKgl~gG~~Pi~av~~~~e  308 (453)
T PRK06943        290 -SKGISGGYLPLSLVLSRDA  308 (453)
T ss_pred             -ehhhccCcccceEEEEcHH
Confidence             58766663 6788887653

>PRK07678 aminotransferase; Validated

Probab=98.51  E-value=3.4e-05  Score=76.08  Aligned_cols=201  Identities=12%  Similarity=-0.023  Sum_probs=115.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+.........+  ..+.+.++.+.+.++++..      ....++++||||+..|++.+|.....   
T Consensus        63 h~~p~v~~ai~~q~~~~~~~~~~~--~~~~~~~lae~l~~~~~~~------~~v~f~~sGseA~e~AlklAr~~t~~---  131 (451)
T PRK07678         63 YGRKELAEAAYEQLKTLSYFPLTQ--SHEPAIKLAEKLNEWLGGE------YVIFFSNSGSEANETAFKIARQYHAQ---  131 (451)
T ss_pred             CCCHHHHHHHHHHHHhcCcccccc--CCHHHHHHHHHHHHhCCCC------CEEEEeCCcHHHHHHHHHHHHHHHHh---
Confidence            345788888877766432221111  1233446777788876543      24789999999999999999875421   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhC------------CeeEEEEecCCcccc---------C---HHHHHHHHh-
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEGYYVM---------N---PVKAVELVD-  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~~~~~---------d---~~~L~~~i~-  200 (356)
                       .|.+ .+.+|+.-.. .|-...-+....|            -++..+|.... ++.         |   ++.+++.++ 
T Consensus       132 -~g~~-~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  208 (451)
T PRK07678        132 -KGEP-HRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDC-YRMPGIESEDIYDLECVKEIDRVMTW  208 (451)
T ss_pred             -cCCC-CCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCcc-ccccccCChHHHHHHHHHHHHHHHHh
Confidence             1211 1345665443 3433322222211            12344443211 111         1   233566664 


Q ss_pred             ---hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccc-c-ccCCCCcccccCCCceEE
Q 018437          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-P-FLYPDLEWDFRLPLVKSI  271 (356)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~-~-~~~~~~~~~~~~~~~Ds~  271 (356)
                         +++.+|++--....-|.+.|    ++++.++|++|      |+++|+|+++.|+.. . ++.-+ .+.+   ..|.+
T Consensus       209 ~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~------g~llI~DEV~tGfGRtG~~~~~~-~~gv---~PDiv  278 (451)
T PRK07678        209 ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKH------GALLISDEVICGFGRTGKAFGFM-NYGV---KPDII  278 (451)
T ss_pred             cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeehhhcCCcCchhHHHH-hcCC---CCCEE
Confidence               34666776655555566643    89999999999      999999999976532 1 00001 1222   46877


Q ss_pred             EEcCCcCCCCC-cCeeEEEEeCC
Q 018437          272 NVSGHKYGLVY-AGVGWVVWRTK  293 (356)
Q Consensus       272 ~~~~hK~l~~P-~g~g~l~~~~~  293 (356)
                      ++  -|.+++. ..+|.++.+++
T Consensus       279 t~--gK~lggG~~Pi~av~~~~~  299 (451)
T PRK07678        279 TM--AKGITSAYLPLSATAVKKE  299 (451)
T ss_pred             Ee--ecccccCCcceeEEEEcHH
Confidence            75  5877665 36788888653

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=98.51  E-value=1.3e-06  Score=78.38  Aligned_cols=184  Identities=12%  Similarity=-0.002  Sum_probs=128.2

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDMDEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      .+|++.++-..++.+....+....   ++..+-+.+...+|++-|-++       -++.+.+-.||.-++.+.+.+    
T Consensus        82 shPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED-------~ilypscfdANag~feail~p----  150 (417)
T KOG1359|consen   82 SHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGRED-------TILYPSCFDANAGAFEAILTP----  150 (417)
T ss_pred             CChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCc-------eEEeccccccchHHHHHhcCh----
Confidence            347788877778776655554432   777888888888999877764       577777888888888877654    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh----CceEEEEecCCCcccccCC
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFED  220 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~  220 (356)
                               ++-|+..+..|.|+....++..         . ...+|+..|+..+.+    +-++|+--..-+.-|-+.|
T Consensus       151 ---------edAvfSDeLNhASIIdGirLck---------r-y~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP  211 (417)
T KOG1359|consen  151 ---------EDAVFSDELNHASIIDGIRLCK---------R-YRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP  211 (417)
T ss_pred             ---------hhhhhccccccchhhhhhHHHh---------h-hccchhHHHHHHHHHhhhheEEEEEecceeccCCCccc
Confidence                     3456666788999887766643         2 367778778876653    3345554444556788999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEE
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      +++|.+++++|      |.++.+|++++-++..-...-..-.+. +..+|.+.....|.+++-.| |+.
T Consensus       212 l~ei~~La~kY------gaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-Gyt  273 (417)
T KOG1359|consen  212 LEEISQLAKKY------GALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG-GYT  273 (417)
T ss_pred             HHHHHHHHHhc------CcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC-CCc
Confidence            99999999999      999999999987665321111111222 45689888889998875443 443

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.50  E-value=1.5e-05  Score=78.65  Aligned_cols=205  Identities=15%  Similarity=0.003  Sum_probs=115.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.-...... ....+.+.++.+.+++++....     ....++++||||+..|++.++..+..+  
T Consensus        72 h~~p~v~~Ai~~ql~~l~~~~~~-~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGseAve~AlklAr~~~~~~--  143 (460)
T PRK06916         72 HQVPELDEAIREQLNKIAHSTLL-GLANVPSILLAEKLIEVVPEGL-----KKVFYSDSGATAVEIAIKMAFQYWQNK--  143 (460)
T ss_pred             CCCHHHHHHHHHHHHhCCCcccc-ccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHhc--
Confidence            44688888888777642211111 1122344567777888764321     247899999999999999998754221  


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhhC------------CeeEEEEecCC-c----------cccCHHHHHHHHh--
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFE------------VELKEVKLEEG-Y----------YVMNPVKAVELVD--  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~G------------~~v~~v~~~~~-~----------~~~d~~~L~~~i~--  200 (356)
                        |.. .+.+|+.-. ..|-...-+....|            ..+..+|.... .          ..-+++.+++.++  
T Consensus       144 --g~t-gr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  220 (460)
T PRK06916        144 --GKP-KKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEK  220 (460)
T ss_pred             --CCC-CCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhC
Confidence              111 134555444 44544333333222            12344443210 0          0123567777775  


Q ss_pred             -hCceEEEEec-CCCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEc
Q 018437          201 -ENTICVAAIL-GSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (356)
Q Consensus       201 -~~~~~v~~~~-~~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~  274 (356)
                       ++..+|++-- .....|.+    +-++++.++|+++      |+++|+|+++.|+..  ...-...+..--..|.+++ 
T Consensus       221 ~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~------g~llI~DEV~TG~GR--tG~~~a~~~~gv~PDiv~~-  291 (460)
T PRK06916        221 HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKY------NVLFITDEVATGFGR--TGKMFACEHENVTPDIMTA-  291 (460)
T ss_pred             CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHc------CCEEEeechhhCCCc--CchhhHHHhcCCCCCeeee-
Confidence             3455666554 24554655    2378999999999      999999999876422  1100001111113577764 


Q ss_pred             CCcCCCCCc-CeeEEEEeC
Q 018437          275 GHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       275 ~hK~l~~P~-g~g~l~~~~  292 (356)
                       -|.+.+.+ .+|.++.++
T Consensus       292 -gK~l~gG~~Pi~av~~~~  309 (460)
T PRK06916        292 -GKGLTGGYLPIAITVTTD  309 (460)
T ss_pred             -ehhhhcCccccceeeecH
Confidence             58766553 678887764

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.50  E-value=7.6e-06  Score=80.23  Aligned_cols=190  Identities=9%  Similarity=0.005  Sum_probs=104.4

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.... .. .+  ...+.++.+.+.+++...      ....++++||||+..|++.++...     
T Consensus        64 h~~p~v~~Ai~~q~~~~~~-~~-~~--~~~~~~la~~l~~~~p~~------~~v~f~~sGseA~e~AlklAr~~t-----  128 (431)
T PRK06209         64 HAYPPVVEAVREALQDGCN-FT-RP--SAIELDAAESFLELIDGA------DMVKFCKNGSDATSAAVRLARAYT-----  128 (431)
T ss_pred             CCCHHHHHHHHHHHHhCcC-CC-CC--CHHHHHHHHHHHHhCCcc------ceEEEecCHHHHHHHHHHHHHHHh-----
Confidence            3457888888877764321 11 12  233445667777776321      137899999999999999987641     


Q ss_pred             hcCCCCCCCeEEec-CCCcchHHHH---HH--hhCCe--eE--EEEecCCccccCHHHHHHHHhh---CceEEEEecCCC
Q 018437          147 EQGKPYDKPNIVTG-ANVQVCWEKF---AR--YFEVE--LK--EVKLEEGYYVMNPVKAVELVDE---NTICVAAILGST  213 (356)
Q Consensus       147 ~~g~~~~~~~vi~s-~~~h~s~~~~---~~--~~G~~--v~--~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~  213 (356)
                        |    +.+|+.. ...+..+...   ..  ..|..  +.  .+.+.    .-|+++|++++++   ++.+|++-....
T Consensus       129 --g----r~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~l~~~~~~~aavi~Epv~g  198 (431)
T PRK06209        129 --G----RDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR----YNDIASLEALFEDHPGRIACVILEPATA  198 (431)
T ss_pred             --C----CCeEEEeccCccccccccccccCCCCCCCChhHhccccccC----CCCHHHHHHHHHhCCCCEEEEEEccccC
Confidence              1    3455543 1221111000   00  00111  00  11111    1278999998863   344555433222


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      ..+....+++|.++|++|      ++++++|+++.|+... ...- ...+.+ ..|.++  .-|.+++....|.++.++
T Consensus       199 ~~~~~~~l~~l~~lc~~~------g~lLI~DEv~tG~~~~-~~g~-~~~~gv-~PDi~t--~gK~lggG~p~~av~~~~  266 (431)
T PRK06209        199 DEPQDGFLHEVRRLCHEN------GALFILDEMITGFRWH-MRGA-QKLYGI-VPDLSC--FGKALGNGFAVSALAGKR  266 (431)
T ss_pred             CCCCHHHHHHHHHHHHHc------CCEEEEEcccccCCcC-cchh-hHHhCC-Ccceee--ehhhhcCCcccEEEEEHH
Confidence            222234599999999999      9999999998664221 0000 001111 346655  468876655567777754

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.48  E-value=1.6e-05  Score=78.56  Aligned_cols=204  Identities=13%  Similarity=-0.007  Sum_probs=114.8

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.-...... ....+...++.+.+++++..+.     ....++++||||+..|++.++..+..+  
T Consensus        63 h~~p~v~~Ai~~ql~~l~~~~~~-~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGsEAve~AlKlAr~~~~~~--  134 (466)
T PRK07030         63 HANPRINQRIKDQVDQLEHVILA-GFSHEPVIELSERLVKITPPGL-----SRCFYADNGSSAIEVALKMSFHYWRNR--  134 (466)
T ss_pred             CCCHHHHHHHHHHHHhcCCcccc-ccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHHh--
Confidence            34578888888777642211111 1123344567777887763221     247899999999999999998753211  


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhhCC------------eeEEEEecCCcc------------ccCHHHHHHHHh-
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFEV------------ELKEVKLEEGYY------------VMNPVKAVELVD-  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~G~------------~v~~v~~~~~~~------------~~d~~~L~~~i~-  200 (356)
                        |.. .+.+|+.-. ..|-...-+....|.            .+..+|.... +            .-+++.+++.+. 
T Consensus       135 --g~t-~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~l~~le~~~~~  210 (466)
T PRK07030        135 --GKP-RKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDC-YLRPEGMSWEEHSRRMFAHMEQTLAE  210 (466)
T ss_pred             --CCC-CCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCc-cccccCCCHHHHHHHHHHHHHHHHHh
Confidence              111 134555444 444433333322221            1334443211 1            113566777775 


Q ss_pred             --hCceEEEEec-CCCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEE
Q 018437          201 --ENTICVAAIL-GSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (356)
Q Consensus       201 --~~~~~v~~~~-~~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~  273 (356)
                        ++..+|++.- .....|.+    +-+++|.++|+++      |+++|+|+++.|+...  ..-......--..|.+++
T Consensus       211 ~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~------g~llI~DEV~TGfGRt--G~~~a~~~~gv~PDiv~~  282 (466)
T PRK07030        211 HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRY------GVHLIHDEIAVGFGRT--GTMFACEQAGIRPDFLCL  282 (466)
T ss_pred             CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHc------CCEEEEeehhhCcCcc--ccchHHHhcCCCCCEEee
Confidence              3455666554 24444655    2378999999999      9999999998775321  000000111113677776


Q ss_pred             cCCcCCCCCc-CeeEEEEeC
Q 018437          274 SGHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       274 ~~hK~l~~P~-g~g~l~~~~  292 (356)
                        -|.+.+.+ ..|.++.++
T Consensus       283 --gKgl~gG~~Pi~av~~~~  300 (466)
T PRK07030        283 --SKALTGGYLPLAAVLTTD  300 (466)
T ss_pred             --ehhccCCcccceEEEecH
Confidence              58776664 678887764

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.47  E-value=1.8e-05  Score=77.34  Aligned_cols=204  Identities=12%  Similarity=-0.074  Sum_probs=110.3

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.-...... ....+...++.+.+.++.+.+.     ....++++||||+..|++.++......  
T Consensus        56 h~~p~i~~ai~~q~~~~~~~~~~-~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGseA~e~AlklAr~~~~~~--  127 (422)
T PRK05630         56 HGHPRLKAAAHKQIDTMSHVMFG-GLTHEPAIKLTRKLLNLTDNGL-----DHVFYSDSGSVSVEVAIKMALQYSKGQ--  127 (422)
T ss_pred             CCCHHHHHHHHHHHHhCCCcccC-CcCCHHHHHHHHHHHhhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHhc--
Confidence            34578888888777642211110 0112333456667777754221     247899999999999999998753211  


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhhC-------------CeeEEEEecCCccccC-------HHHHHHHHhhCceE
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFE-------------VELKEVKLEEGYYVMN-------PVKAVELVDENTIC  205 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~G-------------~~v~~v~~~~~~~~~d-------~~~L~~~i~~~~~~  205 (356)
                        |.. .+.+|+.-. ..|-...-+....+             -.+..+|.... ...+       .+.+++.+.+++.+
T Consensus       128 --g~~-~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~iAA  203 (422)
T PRK05630        128 --GHP-ERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPV-RGSSPQEISEYLRSLELLIDETVAA  203 (422)
T ss_pred             --CCC-CCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcc-cCCChHHHHHHHHHHHHHHhhceEE
Confidence              111 134555444 44543322222211             12334443311 0111       24556666666666


Q ss_pred             EEEecC-CCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC
Q 018437          206 VAAILG-STLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (356)
Q Consensus       206 v~~~~~-~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~  280 (356)
                      |++.-. ....|.+    +.+++|.++|++|      |+++++|+++.|+...  ..-......--..|.+++  -|.+.
T Consensus       204 vi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~------g~llI~DEv~tG~Grt--G~~~a~~~~gv~PDi~t~--gK~l~  273 (422)
T PRK05630        204 IIIEPIVQGAGGMRFHDVALIEGVRTLCDKH------DILLIADEIATGFGRT--GELFATLAAGVTPDIMCV--GKALT  273 (422)
T ss_pred             EEEechhcCcCCcccCCHHHHHHHHHHHHHc------CCEEEEecceeCCCcC--chhhHHHhcCCCCCeeee--echhh
Confidence            666542 4444554    4589999999999      9999999998764221  000001111113566654  68875


Q ss_pred             CC-cCeeEEEEeC
Q 018437          281 VY-AGVGWVVWRT  292 (356)
Q Consensus       281 ~P-~g~g~l~~~~  292 (356)
                      +. ...|.++.++
T Consensus       274 gG~~p~~av~~~~  286 (422)
T PRK05630        274 GGFMSFAATLCTD  286 (422)
T ss_pred             cCccccceeeccH
Confidence            54 2456666654

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=98.47  E-value=4.2e-05  Score=75.56  Aligned_cols=195  Identities=10%  Similarity=-0.049  Sum_probs=112.2

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.++........  ...+...++.+.++++++...     ....++++|+||+..|+..++..       
T Consensus        88 ~~p~v~~Ai~~ql~~~~~~~~~--~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGseAve~AlklAr~~-------  153 (459)
T PRK06082         88 GHPHVIEKVKEQMAKLPFSPRR--FTNETAIECAEKLTEIAGGEL-----NRVLFAPGGTSAIGMALKLARHI-------  153 (459)
T ss_pred             CCHHHHHHHHHHHHhCCCccCc--cCCHHHHHHHHHHHHhCCCCC-----CEEEECCCcHHHHHHHHHHHHHh-------
Confidence            4578888888777643222111  123445567777888875321     24789999999999999998764       


Q ss_pred             cCCCCCCCeEEe-cCCCcchHHHHHHhhCC------------eeEEEEecCCccc-----c------CHHHHHHHHhh--
Q 018437          148 QGKPYDKPNIVT-GANVQVCWEKFARYFEV------------ELKEVKLEEGYYV-----M------NPVKAVELVDE--  201 (356)
Q Consensus       148 ~g~~~~~~~vi~-s~~~h~s~~~~~~~~G~------------~v~~v~~~~~~~~-----~------d~~~L~~~i~~--  201 (356)
                      .|    +.+|+. ....|-...-++...|.            ++..+|... .++     .      +++.|++.+++  
T Consensus       154 tg----r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~i~~~~  228 (459)
T PRK06082        154 TG----NFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAV-SYRGAFPDADGSDVHYADYLEYVIEKEG  228 (459)
T ss_pred             cC----CCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCc-ccccccCChhHHHHHHHHHHHHHHhcCC
Confidence            11    345554 44455544333333221            134444221 011     1      13567777752  


Q ss_pred             CceEEEEecCCCcccc-cCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCc
Q 018437          202 NTICVAAILGSTLTGE-FED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHK  277 (356)
Q Consensus       202 ~~~~v~~~~~~~~tG~-~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK  277 (356)
                      +..+|++--.... |. +-|   +++|.++|++|      |+++++|+++.|+...  ..-......--..|.++  .-|
T Consensus       229 ~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~------g~llI~DEV~tG~GRt--G~~fa~e~~gv~PDiv~--~gK  297 (459)
T PRK06082        229 GIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKH------NVLLIIDEIPNGMGRT--GEWFTHQAYGIEPDILC--IGK  297 (459)
T ss_pred             CEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHc------CCEEEEechhhCCCcc--chhhHhHhhCCCCCEEE--ecc
Confidence            4555655444333 43 334   89999999999      9999999998874321  00000011111467776  468


Q ss_pred             CCCCCc-CeeEEEEeC
Q 018437          278 YGLVYA-GVGWVVWRT  292 (356)
Q Consensus       278 ~l~~P~-g~g~l~~~~  292 (356)
                      .+.+.+ .+|.++.++
T Consensus       298 gl~gG~~P~~av~~~~  313 (459)
T PRK06082        298 GLGGGLVPIAAMITKD  313 (459)
T ss_pred             cccCCCCcceEEEEcH
Confidence            876653 678887765

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.47  E-value=3.2e-06  Score=76.31  Aligned_cols=226  Identities=13%  Similarity=0.044  Sum_probs=150.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH-HHHHHHHHHHhcCCCCCCCeEEec----CCCcchHHHHHHh
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA-FKRKWQQKRKEQGKPYDKPNIVTG----ANVQVCWEKFARY  173 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~-~~~~~~~~~~~~g~~~~~~~vi~s----~~~h~s~~~~~~~  173 (356)
                      -+...++++.|+...+     +.+.++= ..|+..++. +-.+-.          ++-+|+.-    ...||++.+.+++
T Consensus       115 ~il~l~~~iVGA~e~E-----vavmNsL-TvNlh~Ll~sFyKPTe----------kR~KILlE~kaFPSDhYAiesQ~~l  178 (465)
T KOG3846|consen  115 PILPLLAPIVGAQENE-----VAVMNSL-TVNLHSLLISFYKPTE----------KRFKILLEKKAFPSDHYAIESQCKL  178 (465)
T ss_pred             hhhhhhhhhccCCchh-----hhhHhhh-hhHHHHHHHHhcCCcc----------hhhhhhhccCCCCchHHHHHhhhhh
Confidence            4666789999998643     3344433 334444332 222111          12245432    3568899999999


Q ss_pred             hCCee----EEEEecCCccccCHHHHHHHHhhC---ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          174 FEVEL----KEVKLEEGYYVMNPVKAVELVDEN---TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       174 ~G~~v----~~v~~~~~~~~~d~~~L~~~i~~~---~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                      -|+.+    +.|...+..-.+..+++.+.|+++   ..+|+++.....||..-|+.+|...-+..      |+++-.|-|
T Consensus       179 hG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~k------gc~VGfDLA  252 (465)
T KOG3846|consen  179 HGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFK------GCLVGFDLA  252 (465)
T ss_pred             cCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCC------CcEechhhh
Confidence            99873    445554433566778888888753   46677888899999999999999555555      999999988


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCC-CcCeeEEEEeCCCCCccccccccCCCCCCCCC-----------c
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV-YAGVGWVVWRTKDDLPDELVFHINYLGSDQPT-----------F  314 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~  314 (356)
                      ++.+-.|       ..+..-++|+.++.+.|++.+ +.|+|-+++..+ ...+....-..|+++...+           +
T Consensus       253 HAvgNVp-------L~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHek-h~~~~~prl~GWwgh~~s~RF~Mdnvl~lip  324 (465)
T KOG3846|consen  253 HAVGNVP-------LQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEK-HTKESLPRLAGWWGHDPSKRFQMDNVLELIP  324 (465)
T ss_pred             hhhcCCc-------eEEeecCCceEEEeeecccccCCCccceeeeehh-hhcchhhHHhhhccCCcchhhhhccccccCc
Confidence            8754442       334455899999999999876 456777777654 3334544556788775311           1


Q ss_pred             cccC----CCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          315 TLNF----SKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       315 ~~~~----tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ...|    .++.....++..+|+.+.+-.+.++..+..-++.||
T Consensus       325 Ga~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYl  368 (465)
T KOG3846|consen  325 GALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYL  368 (465)
T ss_pred             cccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHH
Confidence            1112    334456788889999998888888888888887775

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.47  E-value=3.6e-05  Score=76.12  Aligned_cols=200  Identities=13%  Similarity=0.055  Sum_probs=111.9

Q ss_pred             CChHHHHHHHHHHhcccCC-CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEe-CChhHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT-VGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t-~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      +.+|.+.+++.+.++.... .....  ..+.+.++.+.+.+++..+..  ......++ ++||||+..|++.+|..    
T Consensus        79 h~~p~v~~Ai~~ql~~~~~~~~~~~--~~~~~~~la~~L~~~~p~~~~--~~~~v~f~~~SGSEAve~AlklAr~~----  150 (464)
T PRK06938         79 HNHPVVIEAIQQVLADELPLHTLDL--TTPVKDQFVQDLFASLPEAFA--REAKIQFCGPTGTDAVEAALKLVKTA----  150 (464)
T ss_pred             CCCHHHHHHHHHHHHhhhccccccc--CCHHHHHHHHHHHHhCccccc--ccceEEEeCCCcHHHHHHHHHHHHHh----
Confidence            3457888888877754321 11111  123333455556665432210  00124454 68999999999999864    


Q ss_pred             HHhcCCCCCCCeEEecCC-CcchHHHHHHhhC------------CeeEEEEecCCccc------------cCHHHHHHHH
Q 018437          145 RKEQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEGYYV------------MNPVKAVELV  199 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~~~~------------~d~~~L~~~i  199 (356)
                         .|    +.+|+.-.. .|-...-++...|            -++..+|.... ++            .+.+.+++.+
T Consensus       151 ---tg----r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~l~~~i  222 (464)
T PRK06938        151 ---TG----RSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYD-YRCPFGLGGEAGVRANLHYLENLL  222 (464)
T ss_pred             ---hC----CCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCcc-ccccccCchhhHHHHHHHHHHHHH
Confidence               11    345665443 4433222222211            12445554321 11            2367788888


Q ss_pred             hh------CceEEEEecCCCcccccC----CHHHHHHHHHHhhhccCCCCcEEEeccccccccc-ccCCCCcccccCCCc
Q 018437          200 DE------NTICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP-FLYPDLEWDFRLPLV  268 (356)
Q Consensus       200 ~~------~~~~v~~~~~~~~tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~-~~~~~~~~~~~~~~~  268 (356)
                      .+      ++.+|++--....-|.+-    -++++.++|++|      |+++|+|+++.|+... .+.....+++   ..
T Consensus       223 ~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~------giLlI~DEV~tGfGRtG~~~a~e~~gv---~P  293 (464)
T PRK06938        223 DDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEA------GIPLIVDEIQSGFGRTGKMFAFEHAGI---IP  293 (464)
T ss_pred             HhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCCcCcHHHHHHhcCC---CC
Confidence            63      356666655444445542    378999999999      9999999998875321 0000001122   36


Q ss_pred             eEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          269 KSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       269 Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      |.+++  -|.+++...+|.++.+++
T Consensus       294 Div~~--gKglggG~PlsAv~~~~~  316 (464)
T PRK06938        294 DVVVL--SKAIGGSLPLAVVVYREW  316 (464)
T ss_pred             CEEEe--eccccCCCceEEEeehhH
Confidence            88776  487766677889888753

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=98.44  E-value=1.9e-05  Score=77.94  Aligned_cols=197  Identities=16%  Similarity=0.028  Sum_probs=113.6

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.-......+ .......++.+.+.++++...     ....++++||||+..|++.++..      
T Consensus        69 h~~p~i~~Ai~~ql~~~~~~~~~~-~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGsEA~e~AlklAr~~------  136 (457)
T PRK05639         69 YSHPKLVKAVQEQVALIQHSMIGY-THSERAIRVAEKLAEISPIEN-----PKVLFGLSGSDAVDMAIKVSKFS------  136 (457)
T ss_pred             CCCHHHHHHHHHHHHhccccccCc-cCCHHHHHHHHHHHhhCCCCc-----CEEEEeCchHHHHHHHHHHHHHh------
Confidence            345788888887776422111111 112333456677777765321     24789999999999999999764      


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhC--------C-----eeEEEEecCCccc--------cCH--------HHHH
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE--------V-----ELKEVKLEEGYYV--------MNP--------VKAV  196 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G--------~-----~v~~v~~~~~~~~--------~d~--------~~L~  196 (356)
                       .|    +.+|+.-.. .|-...-+....|        .     ++..+|.... ++        -|.        +.|+
T Consensus       137 -tg----r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~le  210 (457)
T PRK05639        137 -TR----RPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNP-YRNPWGINGYEEPDELINRFLDYLE  210 (457)
T ss_pred             -cC----CCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCcc-ccccccccccCCHHHHHHHHHHHHH
Confidence             11    356665444 4443332222222        1     1445554321 11        122        2455


Q ss_pred             HHHh------hCceEEEEecCCCcccccC----CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-ccc-cc
Q 018437          197 ELVD------ENTICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWD-FR  264 (356)
Q Consensus       197 ~~i~------~~~~~v~~~~~~~~tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~-~~  264 (356)
                      +.+.      ++..+|++.-.....|.+.    -+++|.++|++|      |+++++|+++.|+...   ... ... +.
T Consensus       211 ~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~------g~llI~DEv~tG~Grt---G~~~a~~~~g  281 (457)
T PRK05639        211 NYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEH------GILLVMDEVQTGIGRT---GKWFASEWFE  281 (457)
T ss_pred             HHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhccCcC---chHHHHHhcC
Confidence            5442      3456676665555556543    378999999999      9999999998864221   100 011 11


Q ss_pred             CCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          265 LPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       265 ~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      + ..|.++  .-|.+.+..+.|.++.+++
T Consensus       282 v-~PDiv~--~gK~l~gG~pi~av~~~~~  307 (457)
T PRK05639        282 V-KPDLII--FGKGVASGMGLSGVIGRKE  307 (457)
T ss_pred             C-CCCEEE--echhhcCCCcceeEEehHH
Confidence            1 468777  4688776677888887643

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=98.44  E-value=4e-05  Score=75.62  Aligned_cols=197  Identities=10%  Similarity=-0.051  Sum_probs=109.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+....... ......+.+.++.+.+.+++....    .....++++||||+..|++.+|...     
T Consensus        70 h~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~~la~~L~~~~p~~~----~~~v~f~~sGseA~e~AlklAr~~t-----  139 (451)
T PRK06918         70 HSHPKVKEALHKQVDQYIHTG-FNVMMYEPYIELAEKLAALAPGSF----DKKVLFLNSGAEAVENAVKIARKYT-----  139 (451)
T ss_pred             CCCHHHHHHHHHHHHhccCcc-ccccccHHHHHHHHHHHHhCCCCC----CCEEEEcCCcHHHHHHHHHHHHHHh-----
Confidence            345788888887776432111 111123445567777888764321    0147899999999999999998641     


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhC-------------CeeEEEEecCC-c--cccC--------HHHHHHHHh-
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLEEG-Y--YVMN--------PVKAVELVD-  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G-------------~~v~~v~~~~~-~--~~~d--------~~~L~~~i~-  200 (356)
                        |    +.+|+.-.. .|-...-+....|             -++..+|.... .  ..+.        .+.+++.+. 
T Consensus       140 --g----r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T PRK06918        140 --K----RQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFIS  213 (451)
T ss_pred             --C----CCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHh
Confidence              1    345655443 4433322222212             11334443210 0  0010        223444332 


Q ss_pred             ----hCceEEEEecCCCcc-ccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCce
Q 018437          201 ----ENTICVAAILGSTLT-GEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVK  269 (356)
Q Consensus       201 ----~~~~~v~~~~~~~~t-G~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~D  269 (356)
                          +++.+|++ -|-... |.+    +-+++|.++|++|      |++++.|++|.++..  .. . .+.+.  ....|
T Consensus       214 ~~~~~~iAavi~-EPi~g~gG~~~~~~~~l~~l~~l~~~~------gillI~DEV~tg~gr--~g-~-~~a~~~~~v~pD  282 (451)
T PRK06918        214 EVAPETIAAVVM-EPVQGEGGFIVPSKKFVQEVRNICSEH------GILFVADEIQTGFAR--TG-K-YFAIEHFDVVPD  282 (451)
T ss_pred             hcCCCceEEEEE-CcccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCcCc--cC-c-eehhHhcCCCCC
Confidence                23444544 444443 543    2278999999999      999999999987543  11 1 11111  11256


Q ss_pred             EEEEcCCcCCCCCcCeeEEEEeC
Q 018437          270 SINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       270 s~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      .+  +.-|.+.+.+.+|+++.++
T Consensus       283 i~--t~sK~l~~G~pig~v~~~~  303 (451)
T PRK06918        283 LI--TVSKSLGAGVPISGVIGRK  303 (451)
T ss_pred             EE--eeehhhcCCCccEEEEEcH
Confidence            54  4568877778889998764

>PRK06917 hypothetical protein; Provisional

Probab=98.44  E-value=3.8e-05  Score=75.60  Aligned_cols=204  Identities=11%  Similarity=-0.048  Sum_probs=112.6

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++....... .....+.+.++.+.+.+++....     ....++++||||+..|++.++..+.. | 
T Consensus        47 h~hp~v~~Ai~~ql~~~~~~~~-~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGsEAve~AlklAr~~~~~-r-  118 (447)
T PRK06917         47 HGVKEIADAIKEQAEEVSFVYR-SQFTSEPAEKLAKKLSDLSPGDL-----NWSFFVNSGSEANETAMKIAIQHFQE-R-  118 (447)
T ss_pred             CCCHHHHHHHHHHHhhCcCccc-cccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCChHHHHHHHHHHHHHHHHh-c-
Confidence            3458888888877765322111 11123444567777888764321     24789999999999999999876432 1 


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhCC------------eeEEEEecCCccc------------cCHHHHHHHHhh
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV------------ELKEVKLEEGYYV------------MNPVKAVELVDE  201 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G~------------~v~~v~~~~~~~~------------~d~~~L~~~i~~  201 (356)
                        |. ..+.+|+.-.. .|-...-+....|.            .+..+|.... .+            -+++.+++.++.
T Consensus       119 --g~-t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~le~~i~~  194 (447)
T PRK06917        119 --GI-QGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYC-YRCPVQKVYPTCQLACATELETAIER  194 (447)
T ss_pred             --CC-CCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcc-cccccCCChHHHHHHHHHHHHHHHHh
Confidence              11 11345665443 34332222222221            1223332110 11            134677777752


Q ss_pred             ----CceEEEEecCCCccc-cc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEE
Q 018437          202 ----NTICVAAILGSTLTG-EF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSIN  272 (356)
Q Consensus       202 ----~~~~v~~~~~~~~tG-~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~  272 (356)
                          ++.+|++.-.....| .+    .-+++|.++|+++      |+++++|+++.|+...  ..-......--..|.++
T Consensus       195 ~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~------g~llI~DEv~tGfGRt--G~~~a~~~~gv~PDi~~  266 (447)
T PRK06917        195 IGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHY------DILFIADEVMTGLGRT--GAMFAMEHWGVEPDIMT  266 (447)
T ss_pred             cCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHc------CCEEEEechhhCcCcc--cchhhHHhcCCCCCEEE
Confidence                455666554443333 33    2378999999999      9999999998764221  10000010111357666


Q ss_pred             EcCCcCCCCCc-CeeEEEEeC
Q 018437          273 VSGHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       273 ~~~hK~l~~P~-g~g~l~~~~  292 (356)
                      +  -|.+.+.+ ..|.++.++
T Consensus       267 ~--gK~l~~G~~Pi~a~~~~~  285 (447)
T PRK06917        267 L--GKGLGAGYTPIAATVVSD  285 (447)
T ss_pred             e--eehhccCCcceEEEEEcH
Confidence            5  58876654 567777764

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=98.43  E-value=1.7e-05  Score=77.66  Aligned_cols=203  Identities=12%  Similarity=-0.024  Sum_probs=111.4

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.-.+... .....+...++.+.++++++.+.     ....++++||||+..|++.++..+..+  
T Consensus        59 h~~p~i~~Ai~~q~~~~~~~~~-~~~~~~~~~~la~~L~~~~p~~~-----~~v~f~~SGsEAve~AlklAr~~~~~~--  130 (428)
T PRK07986         59 YNHPQLNAAMKSQIDAMSHVMF-GGITHPPAIELCRKLVAMTPQPL-----ECVFLADSGSVAVEVAMKMALQYWQAK--  130 (428)
T ss_pred             CCCHHHHHHHHHHHhhcCCccc-cccCCHHHHHHHHHHHhhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHhc--
Confidence            3457888888887764322111 11122334566777877764321     247899999999999999998753211  


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhC-------------CeeEEEEecCCcc-----ccCHHHHHHHHhh---Cce
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLEEGYY-----VMNPVKAVELVDE---NTI  204 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G-------------~~v~~v~~~~~~~-----~~d~~~L~~~i~~---~~~  204 (356)
                        |  .++.+|+.-.. .|-...-+....+             -.+..+|.....+     .-|++++++.++.   +..
T Consensus       131 --g--~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~ia  206 (428)
T PRK07986        131 --G--EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIA  206 (428)
T ss_pred             --C--CCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEE
Confidence              1  11345655444 4433222222211             1123343321101     1256788888853   345


Q ss_pred             EEEEecC-CCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEEcCCcC
Q 018437          205 CVAAILG-STLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKY  278 (356)
Q Consensus       205 ~v~~~~~-~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~  278 (356)
                      +|++-.. ....|.+    ..+++|.++|++|      |+++++|+++.|+..   .... ..+..--..|.++  .-|.
T Consensus       207 avi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~------g~lLI~DEv~tG~Gr---tG~~fa~~~~gv~PDi~t--~gK~  275 (428)
T PRK07986        207 AVILEPIVQGAGGMRIYHPEWLKRVRKLCDRE------GILLIADEIATGFGR---TGKLFACEHAGIAPDILC--LGKA  275 (428)
T ss_pred             EEEEechhcCcCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc---CCCeeeecccCCCCCEEE--echh
Confidence            5555432 3444543    3489999999999      999999999866422   1100 0111111357776  4687


Q ss_pred             CCCC-cCeeEEEEeC
Q 018437          279 GLVY-AGVGWVVWRT  292 (356)
Q Consensus       279 l~~P-~g~g~l~~~~  292 (356)
                      +.+. ..+|.++.++
T Consensus       276 l~gG~~p~~av~~~~  290 (428)
T PRK07986        276 LTGGTMTLSATLTTR  290 (428)
T ss_pred             hhCCcccCcchhchH
Confidence            6555 3566666653

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.41  E-value=3.3e-05  Score=75.68  Aligned_cols=194  Identities=10%  Similarity=-0.091  Sum_probs=109.8

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.... . ..  ....+.++.+.+.++++...     ....++++|+||+..|++.+|...     
T Consensus        69 h~~p~v~~ai~~q~~~~~~-~-~~--~~~~~~~la~~L~~~~~~~~-----~~v~f~~SGsEA~e~AiklAr~~t-----  134 (433)
T PRK00615         69 HSHPKICDAIQQGAERGTS-Y-GL--TSEQEILFAEELFSYLGLED-----HKIRFVSSGTEATMTAVRLARGIT-----  134 (433)
T ss_pred             CCCHHHHHHHHHHHHhCCC-C-CC--CCHHHHHHHHHHHHhCCCCc-----CEEEEeCchHHHHHHHHHHHHHhh-----
Confidence            3457888888877764321 1 11  12334566777777765431     247899999999999999988641     


Q ss_pred             hcCCCCCCCeEEecCC-CcchH---HHHHHhhCCe---e-EEE---EecCCcc---ccCHHHHHHHHhh---CceEEEEe
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCW---EKFARYFEVE---L-KEV---KLEEGYY---VMNPVKAVELVDE---NTICVAAI  209 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~---~~~~~~~G~~---v-~~v---~~~~~~~---~~d~~~L~~~i~~---~~~~v~~~  209 (356)
                        |    +.+|+.-.. .|-..   .......+-.   . ...   +......   .-|+++|++.+.+   +..+|++.
T Consensus       135 --g----r~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~E  208 (433)
T PRK00615        135 --G----RSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFE  208 (433)
T ss_pred             --C----CCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEEC
Confidence              1    345654333 34321   1111111100   0 000   0000000   1167889888853   35566666


Q ss_pred             cCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-ccCCCceEEEEcCCcCCCCCcC
Q 018437          210 LGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVYAG  284 (356)
Q Consensus       210 ~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Ds~~~~~hK~l~~P~g  284 (356)
                      ......|.+.|    +++|.++|++|      |+++++|+++.|+ .  ........ +.+ ..|.++  .-|.+++...
T Consensus       209 pv~~~~G~~~p~~~yl~~l~~lc~~~------g~llI~DEv~tG~-R--~G~~ga~~~~gv-~PDi~~--~gK~lggG~p  276 (433)
T PRK00615        209 PICANMGVVLPKPGFIEGIIQTCRRT------GSLSIMDEVVTGF-R--VAQGGAAAIYHV-KPDITV--YGKILGGGLP  276 (433)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEcccccc-c--ccHhHHHHhcCC-CCCeEE--EcccccCCcc
Confidence            55555577655    45999999999      9999999999654 1  11000001 111 356665  4688765555


Q ss_pred             eeEEEEeC
Q 018437          285 VGWVVWRT  292 (356)
Q Consensus       285 ~g~l~~~~  292 (356)
                      .|.++.++
T Consensus       277 ~~av~~~~  284 (433)
T PRK00615        277 AAAVVAHK  284 (433)
T ss_pred             eeeeeecH
Confidence            77777764

>PRK07483 hypothetical protein; Provisional

Probab=98.40  E-value=7e-05  Score=73.67  Aligned_cols=204  Identities=12%  Similarity=0.006  Sum_probs=111.8

Q ss_pred             CChHHHHHHHHHHhcccCC-CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +.+|.+.+++.+.++.... +...+  ..+...++.+.+.+++.-..     ....++++||||+..|++.++..+..  
T Consensus        46 h~~p~v~~av~~ql~~~~~~~~~~~--~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGsEAve~AlklAr~~~~~--  116 (443)
T PRK07483         46 HSHPRVIAAIHAQIDRLAYAHTSFF--TTEPAEALADRLVAAAPAGL-----EHVYFVSGGSEAVEAALKLARQYFVE--  116 (443)
T ss_pred             CCCHHHHHHHHHHHHhccCcccccc--CCHHHHHHHHHHHHhCCCCC-----CEEEEcCCcHHHHHHHHHHHHHHHHh--
Confidence            3457888888877764321 11111  12334466677777763221     23789999999999999999875421  


Q ss_pred             HhcCCCCCCCeEEec-CCCcchHHHHHHhhC------------CeeEEEEecCCcccc-------------CHHHHHHHH
Q 018437          146 KEQGKPYDKPNIVTG-ANVQVCWEKFARYFE------------VELKEVKLEEGYYVM-------------NPVKAVELV  199 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s-~~~h~s~~~~~~~~G------------~~v~~v~~~~~~~~~-------------d~~~L~~~i  199 (356)
                        .|.. .+.+|+.- ...|-...-+....|            ..+..+|.... ++-             .+++|++++
T Consensus       117 --~g~~-~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~  192 (443)
T PRK07483        117 --IGQP-QRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYA-YREQRAGESDEAYGQRLADELEAKI  192 (443)
T ss_pred             --cCCC-CCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCcc-ccccccCCCHHHHHHHHHHHHHHHH
Confidence              1211 13456654 444443322222211            11333433210 111             135677666


Q ss_pred             h----hCceEEEEecCCC-cccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceE
Q 018437          200 D----ENTICVAAILGST-LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKS  270 (356)
Q Consensus       200 ~----~~~~~v~~~~~~~-~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds  270 (356)
                      .    +++.+|++--... .-|.+.+    +++|.++|++|      |+++|+|+++.|+...  ..-...+..--..|.
T Consensus       193 ~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~------gillI~DEV~tGfGRt--G~~~a~~~~gv~PDi  264 (443)
T PRK07483        193 LELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRY------GVLLILDEVMCGMGRT--GTLFACEEDGVAPDL  264 (443)
T ss_pred             HhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHh------CCEEEEecceeCcccC--cHHHHHhhcCCCCCe
Confidence            4    2445565554332 2255533    89999999999      9999999998875321  000000000113577


Q ss_pred             EEEcCCcCCCCCc-CeeEEEEeCC
Q 018437          271 INVSGHKYGLVYA-GVGWVVWRTK  293 (356)
Q Consensus       271 ~~~~~hK~l~~P~-g~g~l~~~~~  293 (356)
                      +++  -|.+.+.+ .+|.++.+++
T Consensus       265 v~~--gK~l~gG~~Pi~av~~~~~  286 (443)
T PRK07483        265 VTI--AKGLGAGYQPIGAVLASDR  286 (443)
T ss_pred             eee--hhhhccCccccEEEEEcHH
Confidence            775  58776664 6788887653

>PRK06149 hypothetical protein; Provisional

Probab=98.37  E-value=4.8e-05  Score=81.83  Aligned_cols=197  Identities=11%  Similarity=-0.053  Sum_probs=109.8

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+....... .+  ......++.+.+++++..+.     ....++++|+|||..|++.++...      
T Consensus       600 ~hp~v~~Ai~~q~~~l~~~~-~~--~~~~~~elae~L~~~~p~~~-----~~v~f~~SGsEA~e~AlklAr~~t------  665 (972)
T PRK06149        600 GHPRLAAAAARQWSLLNTNS-RF--HYAAVAEFSERLAALAPDGL-----DTVFLVNSGSEANDLAIRLAWAAS------  665 (972)
T ss_pred             CCHHHHHHHHHHHHhccccc-cc--cCHHHHHHHHHHHHhCCCCc-----CEEEEeCCchHHHHHHHHHHHHhc------
Confidence            45788888877665322211 11  12344566677887763211     237899999999999999887641      


Q ss_pred             cCCCCCCCeEEecCC-CcchHHHHHHhhC-------------CeeEEEEecCC-c--cc-cC-----HHHHHHHHh----
Q 018437          148 QGKPYDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLEEG-Y--YV-MN-----PVKAVELVD----  200 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~-~h~s~~~~~~~~G-------------~~v~~v~~~~~-~--~~-~d-----~~~L~~~i~----  200 (356)
                       |    +.+||.... .|-...-+....+             -.+..++.... .  +. .|     .+.+++.++    
T Consensus       666 -g----r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  740 (972)
T PRK06149        666 -G----RRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDA  740 (972)
T ss_pred             -C----CCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhh
Confidence             1    345555544 4422111111100             01333433210 0  11 11     234444442    


Q ss_pred             --hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEE
Q 018437          201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINV  273 (356)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~  273 (356)
                        +++.+|++--.....|.+.+    +++|.++|++|      |+++|+|+++.|+..  ..... .+...--..|.+++
T Consensus       741 ~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~------g~llI~DEV~tGfGR--tG~~~~a~e~~gv~PDivt~  812 (972)
T PRK06149        741 SGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRAR------GGVCIADEVQVGYGR--LGHYFWGFEQQGVVPDIITM  812 (972)
T ss_pred             cCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHc------CCEEEEEeehhcCCc--cCccchhhhhcCCCCCEEEe
Confidence              24556666555555677777    99999999999      999999999955422  11000 01101114677765


Q ss_pred             cCCcCCCCCcCeeEEEEeCC
Q 018437          274 SGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       274 ~~hK~l~~P~g~g~l~~~~~  293 (356)
                        -|.+++...+|.++.+++
T Consensus       813 --gK~lg~G~Pl~av~~~~~  830 (972)
T PRK06149        813 --AKGMGNGHPLGAVITRRE  830 (972)
T ss_pred             --cccccCCeeeEEEEEcHH
Confidence              588776677888888653

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.37  E-value=5.1e-05  Score=74.33  Aligned_cols=204  Identities=12%  Similarity=-0.015  Sum_probs=109.4

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++........ ........++.++++++++-+.     ....++++|++|+..|+..++.....+  
T Consensus        61 h~~p~v~~ai~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~~~~-----~~v~f~~sGseA~e~AlklAr~~~~~~--  132 (427)
T TIGR00508        61 YNHPRLNAAAQKQIDKMSHVMFG-GFTHKPAIELCQKLVKMTPNAL-----DCVFLADSGSVAVEVALKMALQYWQAK--  132 (427)
T ss_pred             CCCHHHHHHHHHHHHhcCCcccc-ccCCHHHHHHHHHHHhhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHhh--
Confidence            44578888888777642211110 0111223456667777764321     247899999999999999998754221  


Q ss_pred             hcCCCCCCCeEE-ecCCCcchHHHHHHhhCC-------------eeEEEEecCCcc-----ccCHHHHHHHHhh---Cce
Q 018437          147 EQGKPYDKPNIV-TGANVQVCWEKFARYFEV-------------ELKEVKLEEGYY-----VMNPVKAVELVDE---NTI  204 (356)
Q Consensus       147 ~~g~~~~~~~vi-~s~~~h~s~~~~~~~~G~-------------~v~~v~~~~~~~-----~~d~~~L~~~i~~---~~~  204 (356)
                        |.+. +.+|+ .....|-...-+....|-             .+..+|.....+     .-|++++++.+.+   +..
T Consensus       133 --~~~~-r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~va  209 (427)
T TIGR00508       133 --GEKN-RQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIA  209 (427)
T ss_pred             --CCCC-ccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEE
Confidence              1111 23444 444555433222222221             112232211101     1156777777753   344


Q ss_pred             EEEEecC-CCcccc----cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEEcCCcC
Q 018437          205 CVAAILG-STLTGE----FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKY  278 (356)
Q Consensus       205 ~v~~~~~-~~~tG~----~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~  278 (356)
                      +|++-.. ...-|.    ..++++|.++|++|      ++++++|+++.|+...   ... ..+......|.++  .-|.
T Consensus       210 avivEPv~~g~gG~~~~~~~~l~~l~~lc~~~------~~llI~DEv~tG~Gr~---G~~~~~~~~~v~pDi~~--~gK~  278 (427)
T TIGR00508       210 AVILEPIVQGAGGMRFYHPTYLKRVQALCKQY------DILLIADEIATGFGRT---GKLFACEHAGVVPDILC--VGKA  278 (427)
T ss_pred             EEEEechhcCcCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCcC---CccchhhhcCCCCCEEE--echh
Confidence            5554432 333343    36789999999999      9999999998653221   110 1111111457666  4687


Q ss_pred             CCCCc-CeeEEEEeC
Q 018437          279 GLVYA-GVGWVVWRT  292 (356)
Q Consensus       279 l~~P~-g~g~l~~~~  292 (356)
                      +.+.. .++.++.++
T Consensus       279 l~gG~~p~~a~~~~~  293 (427)
T TIGR00508       279 LTGGYMTLSATVTTD  293 (427)
T ss_pred             hhcCcccceEEEEcH
Confidence            65553 456666653

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.35  E-value=6.8e-05  Score=74.24  Aligned_cols=209  Identities=10%  Similarity=-0.057  Sum_probs=112.9

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++.-..... .....+...++.+.+.+++.-.........+.++++||||+..|++.++.....+  
T Consensus        80 h~~p~i~~Ai~~q~~~l~~~~~-~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~--  156 (472)
T PRK08742         80 HAEPRIGAAIAAQAGELEQVML-AGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNR--  156 (472)
T ss_pred             CCCHHHHHHHHHHHHhCCCccc-cccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhc--
Confidence            3457888888776653111111 0111233446667777776321000001247899999999999999998764321  


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhCC------------eeEEEEecCCccc------------cCHHHHHHHHh-
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV------------ELKEVKLEEGYYV------------MNPVKAVELVD-  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G~------------~v~~v~~~~~~~~------------~d~~~L~~~i~-  200 (356)
                        |.. .+.+||.-.. .|-...-+....|.            ++..+|.... ++            -+++.+++.+. 
T Consensus       157 --g~~-~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  232 (472)
T PRK08742        157 --GEH-RRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDA-YLAEPGQSAEDYALQAADALQALFEQ  232 (472)
T ss_pred             --CCC-CCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCc-cccccCCCHHHHHHHHHHHHHHHHHh
Confidence              111 1345655444 44333222222221            2344443211 11            13567777775 


Q ss_pred             --hCceEEEEec-CCCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEE
Q 018437          201 --ENTICVAAIL-GSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (356)
Q Consensus       201 --~~~~~v~~~~-~~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~  273 (356)
                        +++.+|++-- .....|.+    +-++++.++|++|      |+++|+|+++.|+...  ..-...+..--..|.+++
T Consensus       233 ~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~------gillI~DEV~TGfGRt--G~~~a~e~~gv~PDiv~~  304 (472)
T PRK08742        233 SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAH------GAFLIADEIATGFGRT--GTLFACEQAGVMPDLLCL  304 (472)
T ss_pred             CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCCC--ccchHHHhcCCCCCEEEE
Confidence              3455555543 24444654    2378999999999      9999999998775331  000001111114677776


Q ss_pred             cCCcCCCCCc-CeeEEEEeC
Q 018437          274 SGHKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       274 ~~hK~l~~P~-g~g~l~~~~  292 (356)
                        -|.+.+.+ ..|.++.++
T Consensus       305 --gKgl~gG~~Plaav~~~~  322 (472)
T PRK08742        305 --SKGLTGGFLPLSAVLATQ  322 (472)
T ss_pred             --cccccCCCCCcceeeccH
Confidence              58776554 577777764

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=5.1e-06  Score=78.59  Aligned_cols=221  Identities=12%  Similarity=-0.051  Sum_probs=130.2

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH
Q 018437           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA  171 (356)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~  171 (356)
                      +...+-+++.+.+|+++|.+.      ..+|..| -..|.+.+-++..+             +..|+.-+..|.|+...|
T Consensus       179 G~~~~hkelE~l~A~f~g~e~------a~vF~mG-f~TNs~~~p~l~~~-------------gsLIiSDelNHaSi~~Ga  238 (519)
T KOG1357|consen  179 GTTEEHKELEELVARFLGVED------AIVFSMG-FATNSMNIPSLLGK-------------GSLIISDELNHASLITGA  238 (519)
T ss_pred             ccHHHHHHHHHHHHHhcCCcc------eEEEecc-ccccccCcceeecC-------------Ccceeeccccchheeccc
Confidence            666777788888999999985      2455554 33343444333322             356777788999999999


Q ss_pred             HhhCCeeEEEEecCCccccCHHHHHHHHhh-------Cc-----eEEEEe-cCCCcccccCCHHHHHHHHHHhhhccCCC
Q 018437          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDE-------NT-----ICVAAI-LGSTLTGEFEDVKLLHDLLTKKNEETGWD  238 (356)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-------~~-----~~v~~~-~~~~~tG~~~~i~~I~~i~~~~~~~~~~~  238 (356)
                      ++-|+.++...-+      |.+.||+.+.+       +|     +++++. .-...-|.+.++.++..++|++      .
T Consensus       239 RLSgAtiRVfkHN------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkky------k  306 (519)
T KOG1357|consen  239 RLSGATTRVFRHN------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKY------K  306 (519)
T ss_pred             cccCceEEEEecC------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccc------c
Confidence            9999998877643      34445554432       21     333333 3334678999999999999999      9


Q ss_pred             CcEEEecccccccccccCCC--CcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccc
Q 018437          239 TPIHVDAASGGFIAPFLYPD--LEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL  316 (356)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~--~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (356)
                      .+++.|+|+..+..+-...-  .-+......+|.+.-.+-|.+++-  -|.+ ..+++. .+.+.....+.-+.      
T Consensus       307 ayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~--GGyi-agsk~l-id~lrt~s~~~~ya------  376 (519)
T KOG1357|consen  307 AYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAA--GGYI-AGSKEL-IDYLRTPSPSALYA------  376 (519)
T ss_pred             EEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcccc--ccee-cCcHHH-HhhhccCCCceeec------
Confidence            99999999987665311100  001111234677777777876432  1343 333222 12211111111111      


Q ss_pred             cCCCChhHHHHHHHHHHHh----CHHHHHHHHHHHHhccCccc
Q 018437          317 NFSKGSSQIIAQYYQFIRL----GFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       317 ~~tr~~~~~~~~~~~l~~l----g~~G~~~~~~~~~~~a~~l~  355 (356)
                       -+-+...+-....+++.+    |.++-++.+++..++.+|++
T Consensus       377 -t~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr  418 (519)
T KOG1357|consen  377 -TSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFR  418 (519)
T ss_pred             -ccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHH
Confidence             112222233334555543    45667888888898888875

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.32  E-value=9.2e-05  Score=73.14  Aligned_cols=200  Identities=10%  Similarity=-0.007  Sum_probs=109.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCe-EEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG-VGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~-~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +.+|.+.+++.+.+......... ......+.++.+.+.+++.....   .... .++++||||+..|++.++..     
T Consensus        74 H~~p~v~~Ai~~q~~~~~~~~~~-~~~~~~~~~lAe~L~~~~p~~~~---~~~~~f~~~SGsEAve~AlklAr~~-----  144 (459)
T PRK06931         74 HNHPDVLQSIQDVLTSGLPLHTL-DLTTPLKDAFSEYLLSLLPGQGK---EYCLQFTGPSGADAVEAAIKLAKTY-----  144 (459)
T ss_pred             CCCHHHHHHHHHHHhhhcccccc-ccCCHHHHHHHHHHHHhCCCccc---cceEEEeCCCcHHHHHHHHHHHHHh-----
Confidence            34578888888776542211111 11234555677778877643210   0123 45579999999999999864     


Q ss_pred             HhcCCCCCCCeEEecCCC-cchHHHHHHhhC------------CeeEEEEecCCccc--------cCHHHH----HHHHh
Q 018437          146 KEQGKPYDKPNIVTGANV-QVCWEKFARYFE------------VELKEVKLEEGYYV--------MNPVKA----VELVD  200 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~-h~s~~~~~~~~G------------~~v~~v~~~~~~~~--------~d~~~L----~~~i~  200 (356)
                        .|    +.+|+.-..+ |-...-+....|            -++..+|.... ++        -+.+.+    ++.++
T Consensus       145 --tg----r~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  217 (459)
T PRK06931        145 --TG----RSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHE-YRCPLGIGGEAGVKALTYYFENFIE  217 (459)
T ss_pred             --cC----CCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCcc-ccccccCCchhHHHHHHHHHHHHHH
Confidence              11    3556654444 433322222211            12445554321 11        123333    33333


Q ss_pred             h------CceEEEEecCCCcccccC----CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceE
Q 018437          201 E------NTICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKS  270 (356)
Q Consensus       201 ~------~~~~v~~~~~~~~tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds  270 (356)
                      .      +..+|++--.....|.+-    -++++.++|++|      |+++|+|+++.|+...  ..-..+...--..|.
T Consensus       218 ~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~------g~LlI~DEV~tGfGRt--G~~~a~~~~gv~PDi  289 (459)
T PRK06931        218 DVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKH------GILLIVDEVQAGFART--GKMFAFEHAGIEPDI  289 (459)
T ss_pred             hhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecchhcCCcC--chHHHhhhcCCCCCE
Confidence            1      355666654444445542    278999999999      9999999998775321  000001111114677


Q ss_pred             EEEcCCcCCCCCcCeeEEEEeC
Q 018437          271 INVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       271 ~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +++  -|.+.+...+|.++.++
T Consensus       290 vt~--gK~l~gG~Pi~av~~~~  309 (459)
T PRK06931        290 IVM--SKAVGGGLPLAVLGIKK  309 (459)
T ss_pred             EEe--cccccCCcceeeeeeHH
Confidence            775  57766667778877654

>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]

Probab=98.32  E-value=2.4e-06  Score=81.44  Aligned_cols=183  Identities=11%  Similarity=0.106  Sum_probs=123.9

Q ss_pred             CCeEEecCCCcchH-HHHHHhhCCeeEEEEe--cCC----ccccCHHHHHHHHhh------CceEEEEecCCCcccccCC
Q 018437          154 KPNIVTGANVQVCW-EKFARYFEVELKEVKL--EEG----YYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED  220 (356)
Q Consensus       154 ~~~vi~s~~~h~s~-~~~~~~~G~~v~~v~~--~~~----~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~  220 (356)
                      .|.+++|+..|.-. ..+|+.+|+.-..|.+  +.+    .|+||.-.+++.|++      +|.+++...+.+..|..|.
T Consensus       231 aPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDm  310 (838)
T KOG0630|consen  231 APTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDM  310 (838)
T ss_pred             CceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHH
Confidence            57899999999764 4566778987443332  221    269999999999975      4778889999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccc
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL  300 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~  300 (356)
                      +-+|.++|+++.     .+|+|.-|-- ...+.|..|+.........+||++++.--|++.|.-.-+++-|.-+-.  ..
T Consensus       311 i~kildi~eaha-----kfWLHasGha-iAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg~--aa  382 (838)
T KOG0630|consen  311 ILKILDICEAHA-----KFWLHASGHA-IAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEGS--AA  382 (838)
T ss_pred             HHHHHHHHHHhh-----heeEeeccch-hhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeecccccc--cc
Confidence            999999999993     3999987632 111222222211111145689999999999998876555554421110  00


Q ss_pred             ccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                         ..|.    .++-  .++ -..++.+|.+++.+|..-+.++++....+++.|
T Consensus       383 ---Safe----sdpi--~re-kLdaLp~Wta~q~LggKaIadmienAFll~kil  426 (838)
T KOG0630|consen  383 ---SAFE----SDPI--LRE-KLDALPLWTALQALGGKAIADMIENAFLLCKIL  426 (838)
T ss_pred             ---hhcc----cChH--HHH-hhccchHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence               0011    1111  122 224899999999999999999999988777654

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.28  E-value=5.6e-05  Score=74.03  Aligned_cols=204  Identities=10%  Similarity=-0.082  Sum_probs=110.7

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +..|.+.+++.+.++....... .....+.+.++.+.+.+++..+.     ....++++|+||+..|++.++.....+  
T Consensus        60 h~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGseAve~AlklAr~~~~~~--  131 (429)
T PRK06173         60 YNHPRLNAAATNQLAKMSHIMF-GGFTHEPAVELAQKLLEILPPSL-----NKIFFADSGSVAVEVAMKMALQYQQAK--  131 (429)
T ss_pred             CCCHHHHHHHHHHHHhcCCccc-cccCCHHHHHHHHHHHhhCCCCc-----CEEEEeCCchHHHHHHHHHHHHHHHHh--
Confidence            3457888888877764322111 11112334466677777763221     247899999999999999998753221  


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhC-------------CeeEEEEecCCc-----cccCHHHHHHHHh---hCce
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLEEGY-----YVMNPVKAVELVD---ENTI  204 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G-------------~~v~~v~~~~~~-----~~~d~~~L~~~i~---~~~~  204 (356)
                        |.. .+.+|+.-.. .|-...-+....|             -.+..+|.....     ..-+++.|++.+.   ++..
T Consensus       132 --g~~-~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iA  208 (429)
T PRK06173        132 --GEV-QRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIA  208 (429)
T ss_pred             --CCC-CCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEE
Confidence              111 1345655444 4432221211111             013344432110     0124677888885   3455


Q ss_pred             EEEEecC-CCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCceEEEEcCCcC
Q 018437          205 CVAAILG-STLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKY  278 (356)
Q Consensus       205 ~v~~~~~-~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~  278 (356)
                      +|++.-. ....|.+    +-++++.++|++|      |+++++|+++.|+..   .... ..+..--..|.++  .-|.
T Consensus       209 Avi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~------g~llI~DEv~tG~Gr---tG~~~a~~~~gv~PDiv~--~gK~  277 (429)
T PRK06173        209 ALILEPVVQGAGGMYFYSPTYLVKARELCDQY------GVLLIFDEIATGFGR---TGKLFALEHAGVVPDIMC--IGKA  277 (429)
T ss_pred             EEEEcchhhccCCcccCCHHHHHHHHHHHHHc------CCeEEecchhcCCCc---CCcchHHHhcCCCCCEEE--eehh
Confidence            5655542 4444554    3378999999999      999999999866321   1100 0111111357666  4687


Q ss_pred             CCCCc-CeeEEEEeC
Q 018437          279 GLVYA-GVGWVVWRT  292 (356)
Q Consensus       279 l~~P~-g~g~l~~~~  292 (356)
                      +++.+ .+|.++.++
T Consensus       278 l~gG~~p~~a~~~~~  292 (429)
T PRK06173        278 LTGGYLTLSATITTE  292 (429)
T ss_pred             hhCCccccceEEecH
Confidence            65553 466666654

>PRK06148 hypothetical protein; Provisional

Probab=98.27  E-value=9.7e-05  Score=79.66  Aligned_cols=196  Identities=10%  Similarity=0.008  Sum_probs=110.4

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+..-..+. .+  ..+.+.++.+.+++++..+.     ....++++||||+..|++.+|..       
T Consensus       639 ~hp~v~~Ai~~q~~~l~~~~-~~--~~~~~~~lAe~L~~~~p~~~-----~~v~f~nSGsEA~e~AlklAr~~-------  703 (1013)
T PRK06148        639 AHPRVVAAAARQAARLNTNT-RY--LHDAIVAYAERLTATLPDGL-----TVAFFVNSGSEANSLALRLARAH-------  703 (1013)
T ss_pred             CCHHHHHHHHHHHhhcCCcC-Cc--CCHHHHHHHHHHHHhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHh-------
Confidence            35788888877665421111 11  12344466677777764321     23789999999999999999864       


Q ss_pred             cCCCCCCCeEEecCCC-cchHHHHHHhh--------C----CeeEEEEecCC---ccc-cC-------HHHHHHHHh---
Q 018437          148 QGKPYDKPNIVTGANV-QVCWEKFARYF--------E----VELKEVKLEEG---YYV-MN-------PVKAVELVD---  200 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~-h~s~~~~~~~~--------G----~~v~~v~~~~~---~~~-~d-------~~~L~~~i~---  200 (356)
                      .|    +.+||.-..+ |-...-+....        +    -.+..++....   .+. -|       .+.+++.+.   
T Consensus       704 tG----r~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  779 (1013)
T PRK06148        704 TG----QRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMA  779 (1013)
T ss_pred             cC----CCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhh
Confidence            11    3455554433 43222111111        1    11222222100   011 01       234555553   


Q ss_pred             ---hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCC-CcccccCCCceEEE
Q 018437          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-LEWDFRLPLVKSIN  272 (356)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~~~~~~~~Ds~~  272 (356)
                         +++.+|++--....-|.+-+    ++++.++|+++      |+++|+|+++.|+..  .... ..+...--..|.++
T Consensus       780 ~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~------g~llI~DEVqtGfGR--tG~~~~a~e~~gv~PDivt  851 (1013)
T PRK06148        780 AKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA------GGVCIADEVQVGFGR--VGSHWWAFETQGVVPDIVT  851 (1013)
T ss_pred             ccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh------CCEEEEEecccCCCC--CCCcchhhhhcCCCcceee
Confidence               24566666655555566654    89999999999      999999999976532  1100 00111111367777


Q ss_pred             EcCCcCCCCCcCeeEEEEeC
Q 018437          273 VSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       273 ~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +  -|.+++...+|.++.++
T Consensus       852 ~--gK~lggG~Plgav~~~~  869 (1013)
T PRK06148        852 M--GKPIGNGHPMGAVVTTR  869 (1013)
T ss_pred             e--cccccCCcceEEEEEcH
Confidence            5  58877778889998864

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.25  E-value=8.6e-06  Score=73.35  Aligned_cols=155  Identities=14%  Similarity=0.086  Sum_probs=107.1

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEE-ecCCCcchHHHH
Q 018437           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIV-TGANVQVCWEKF  170 (356)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi-~s~~~h~s~~~~  170 (356)
                      +...||+-    +|+.||.+..   ....-+. +||.|+..++....++             +++++ +...-|-.....
T Consensus        66 GRdtLe~v----yA~vf~aE~a---~VRpq~i-sGTHAI~~aLfg~LRp-------------gDell~i~G~PYDTLeev  124 (416)
T COG4100          66 GRDTLERV----YAQVFGAEAA---LVRPQII-SGTHAIACALFGILRP-------------GDELLYITGSPYDTLEEV  124 (416)
T ss_pred             chhHHHHH----HHHHhccccc---eeeeeee-cchhHHHHHHHhccCC-------------CCeEEEecCCcchhHHHH
Confidence            44445543    8999999862   1333444 4589999998877654             45443 333333333333


Q ss_pred             H----------HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEec----CCCcccccCCHHHHHHHHHHhhhccC
Q 018437          171 A----------RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL----GSTLTGEFEDVKLLHDLLTKKNEETG  236 (356)
Q Consensus       171 ~----------~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~----~~~~tG~~~~i~~I~~i~~~~~~~~~  236 (356)
                      .          +-+|++.+.||+..+ +.+|.+.+++++.++|++|.+.-    ..-|+-.+++|+++.++.|+.++   
T Consensus       125 IG~rg~~~gSL~dfgi~Y~~v~Lt~~-gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inp---  200 (416)
T COG4100         125 IGLRGEGQGSLKDFGIKYKAVPLTAD-GKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINP---  200 (416)
T ss_pred             hccCCCCcccHHHhCcceeecccccC-CcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCC---
Confidence            2          234667888999875 99999999999999999887653    44555667888888888888754   


Q ss_pred             CCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC
Q 018437          237 WDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (356)
Q Consensus       237 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l  279 (356)
                       ++.+.||.|||.|+-.    ..+.   .-++|.+.-|.=|.-
T Consensus       201 -n~ivFVDNCYGEFvE~----~EPt---~vGaDliAGSLIKNp  235 (416)
T COG4100         201 -NVIVFVDNCYGEFVEE----KEPT---HVGADLIAGSLIKNP  235 (416)
T ss_pred             -CEEEEEeccchhhhhc----cCcc---ccchhhhccceeeCC
Confidence             8999999999987651    1112   238999998888873

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.24  E-value=3.6e-05  Score=74.33  Aligned_cols=248  Identities=13%  Similarity=-0.005  Sum_probs=128.1

Q ss_pred             CChHHHHHHHHHHhcccCCC-cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +..+.+.+++.+-+++-.+. ........  -.++.++|+++..-..    -..+.+|.|||+|+-.|++.++.+|..+ 
T Consensus        60 h~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P--a~~LA~~L~~~aP~~~----l~~vFf~~sGSeAvEtAlKma~qY~~~~-  132 (449)
T COG0161          60 HGRPEIAEAIKKQLDKLPHVMFGGFTHEP--AIELAEKLAELAPEGG----LDHVFFTDSGSEAVETALKMALQYWRAR-  132 (449)
T ss_pred             cCCHHHHHHHHHHHHhCCchhhcccCCch--HHHHHHHHHHhCCCCC----ccEEEEeCCchHHHHHHHHHHHHHHHhc-
Confidence            44578888887665542222 11111222  2256677888876210    1348999999999999999999988643 


Q ss_pred             HhcCCCCCCCeEEecCC-CcchHHHHHHhhC-------------CeeEEEEecC-------Cccc----cCHHHHHHHHh
Q 018437          146 KEQGKPYDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLEE-------GYYV----MNPVKAVELVD  200 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G-------------~~v~~v~~~~-------~~~~----~d~~~L~~~i~  200 (356)
                         |.+. +.++|.-.. .|-+..-++...|             .++..+|...       +.+.    -..++|++.|.
T Consensus       133 ---G~p~-r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~  208 (449)
T COG0161         133 ---GQPQ-RKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALIL  208 (449)
T ss_pred             ---CCCc-ceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHH
Confidence               3222 234554333 3433333333222             1233444321       0011    23567777776


Q ss_pred             h---Cc-eEEEEecCCCc-ccccC----CHHHHHHHHHHhhhccCCCCcEEEeccccccccc---ccCCCCcccccCCCc
Q 018437          201 E---NT-ICVAAILGSTL-TGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP---FLYPDLEWDFRLPLV  268 (356)
Q Consensus       201 ~---~~-~~v~~~~~~~~-tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~---~~~~~~~~~~~~~~~  268 (356)
                      +   ++ .++++--..-- .|.+-    =++++.++|++|      |+++|.|++..||...   |.+.+  ..+   .-
T Consensus       209 ~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky------~ILlI~DEV~tGFGRTG~~FA~e~--~gi---~P  277 (449)
T COG0161         209 EHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKY------GILLIADEVATGFGRTGKMFACEH--AGI---VP  277 (449)
T ss_pred             hcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHc------CcEEEeecceeCCCcCchhhhhhh--cCC---CC
Confidence            4   33 34443333333 34443    279999999999      9999999998775431   11111  111   34


Q ss_pred             eEEEEcCCcCCCCCc-CeeEEEEeCCCCCccccccc-cCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHH
Q 018437          269 KSINVSGHKYGLVYA-GVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFI  345 (356)
Q Consensus       269 Ds~~~~~hK~l~~P~-g~g~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~  345 (356)
                      |.++++  |.+.+.+ ..|.++++++ .. +.+... ..-+.+   -+|+  |-+....++..+.|+.+-++++.+..+
T Consensus       278 Di~~~a--KGLT~GY~Pl~a~l~~~~-I~-~~~~~~~~~~f~H---G~TY--sghPlacAaAla~L~i~e~e~l~~~~~  347 (449)
T COG0161         278 DILCLA--KGLTGGYLPLSAVLTSDR-IY-EAFSDGDAGAFMH---GHTY--SGNPLACAAALANLDILEEEDLLERVA  347 (449)
T ss_pred             Ceeeec--ccccccchhhHhHhhhHH-HH-HHHhcccCCeecc---CCcc--ccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            666654  6543322 3455555543 21 222111 111111   1222  222333455557777777676544433

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.19  E-value=0.00012  Score=71.93  Aligned_cols=143  Identities=13%  Similarity=0.051  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCeEEecCC-CcchHHHHHHhhCC
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY-DKPNIVTGAN-VQVCWEKFARYFEV  176 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~-~~~~vi~s~~-~h~s~~~~~~~~G~  176 (356)
                      ++.+.++++.+.+.    .....++++||||+..|++.++....+.....|.+. .+.+|+.-.. .|-...-+....|-
T Consensus        89 ~l~~~l~~~~~~~~----~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~  164 (431)
T TIGR03251        89 RFVDTFARVLGDPA----LPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNT  164 (431)
T ss_pred             HHHHHHHHhcCCCC----cCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCC
Confidence            44455666542111    124789999999999999999875211111122111 1235555443 44333222222221


Q ss_pred             e-e----------EEEE-------ecCCcc-------ccCHHHHHHHHh---hCceEEEEecCCCccccc----CCHHHH
Q 018437          177 E-L----------KEVK-------LEEGYY-------VMNPVKAVELVD---ENTICVAAILGSTLTGEF----EDVKLL  224 (356)
Q Consensus       177 ~-v----------~~v~-------~~~~~~-------~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~----~~i~~I  224 (356)
                      . .          ..++       .+....       .-+++++++.+.   +++.+|++.-.....|.+    +.+++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l  244 (431)
T TIGR03251       165 DPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAM  244 (431)
T ss_pred             ccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHH
Confidence            1 0          0011       110000       013455566664   456778877666666765    468999


Q ss_pred             HHHHHHhhhccCCCCcEEEeccccccc
Q 018437          225 HDLLTKKNEETGWDTPIHVDAASGGFI  251 (356)
Q Consensus       225 ~~i~~~~~~~~~~~~~l~vD~a~~~~~  251 (356)
                      .++|++|      |+++++|+++.|+.
T Consensus       245 ~~lc~~~------g~llI~DEV~tG~G  265 (431)
T TIGR03251       245 RALCDEH------DALLIFDEVQTGVG  265 (431)
T ss_pred             HHHHHHc------CCEEEEecchhccC
Confidence            9999999      99999999998643

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.14  E-value=0.00016  Score=66.14  Aligned_cols=171  Identities=15%  Similarity=0.113  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC-CCcc---------
Q 018437           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQV---------  165 (356)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~-~~h~---------  165 (356)
                      ..-+..+.+.+++|.+.       ..-+..|.||+-.|+..+|...-..   ++.+..+.+|+... ..|-         
T Consensus       102 ~~~~f~~~vt~lf~~~k-------vlpmnTGaEa~Eta~KLaR~wgy~~---K~ip~nka~il~~~~nFhGrT~~ais~s  171 (427)
T KOG1402|consen  102 VLGEFAEYVTKLFGYDK-------VLPMNTGAEAVETACKLARKWGYRK---KNIPKNKAKILSAENNFHGRTLGAISLS  171 (427)
T ss_pred             hHHHHHHHHHHhcCcce-------eeecccchhHHHHHHHHHHHHHHhh---ccCCccceeEEEecccccCceeeeEEec
Confidence            33455677999999986       5556667999999999887542111   11121122333222 2221         


Q ss_pred             ----hHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCC----HHHHHHHHHHhhhccC
Q 018437          166 ----CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETG  236 (356)
Q Consensus       166 ----s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~  236 (356)
                          ++...--.+-..+..||.+      |.++|+.+++. +.+++++---.-.-|++-|    ++++.++|++|     
T Consensus       172 ~d~ds~~~fgp~~P~~~~~v~Y~------d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtky-----  240 (427)
T KOG1402|consen  172 TDPDSWDGFGPFLPGVVDKVPYG------DAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKY-----  240 (427)
T ss_pred             CCcchhhccCCCCCCcceeeccC------CHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhh-----
Confidence                2222211111224555543      67999999976 4455555555666777633    79999999999     


Q ss_pred             CCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCC-CcCeeEEEEeC
Q 018437          237 WDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV-YAGVGWVVWRT  292 (356)
Q Consensus       237 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g~g~l~~~~  292 (356)
                       +++++.|+.|.|....  ..-...+...-.-|.+.+  .|.+.+ -+..+.+++.+
T Consensus       241 -nvl~I~DEvQTGl~RT--Gk~la~d~env~PDivil--gKalSGG~~Pvsavl~~~  292 (427)
T KOG1402|consen  241 -NVLLIADEVQTGLART--GKLLACDYENVRPDIVIL--GKALSGGVYPVSAVLADD  292 (427)
T ss_pred             -cEEEEehhhhhccccc--CcEEEeehhhcCCCeEEE--eccccCCeeeeEEEEecH
Confidence             9999999999874331  111112222224465553  465433 34556665543

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.04  E-value=0.00062  Score=64.12  Aligned_cols=206  Identities=10%  Similarity=-0.053  Sum_probs=114.8

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +..|++.+++.+-++.-.+....+-....+  ++.+.+.+..+-..    ...+.++.+|||||..||..+|+....+  
T Consensus        72 hanpev~ral~~q~~k~~hs~~~~~t~eav--~l~~~l~~~~~~~~----~~rvff~nsGTeAne~ALK~Ark~~~~~--  143 (433)
T KOG1401|consen   72 HANPEVARALAEQAKKLGHSSNGYFTLEAV--ELEEVLSAVLGKGS----AERVFFCNSGTEANETALKFARKFTGKK--  143 (433)
T ss_pred             CCCHHHHHHHHHHHhhheeccCccccHHHH--HHHHHHHhcccCCC----ccEEEEecCCcHHHHHHHHHHHHhhccc--
Confidence            345888888876665422111111111111  22233444443322    1347899999999999999998753211  


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHHhhCCeeEEEEecC---C--c-cccCHHHHHHHHhhCc---eEEEEecCCCccc
Q 018437          147 EQGKPYDKPNIVT-GANVQVCWEKFARYFEVELKEVKLEE---G--Y-YVMNPVKAVELVDENT---ICVAAILGSTLTG  216 (356)
Q Consensus       147 ~~g~~~~~~~vi~-s~~~h~s~~~~~~~~G~~v~~v~~~~---~--~-~~~d~~~L~~~i~~~~---~~v~~~~~~~~tG  216 (356)
                         .+..+..+|. -...|-.-.-++...+.....+|.++   +  . ---|..+|++.++...   .+|++--..-.-|
T Consensus       144 ---~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG  220 (433)
T KOG1401|consen  144 ---HPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGG  220 (433)
T ss_pred             ---CCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCC
Confidence               1111223554 44455444444443333322222211   0  0 1126889999997643   5666666665544


Q ss_pred             cc--CC--HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          217 EF--ED--VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       217 ~~--~~--i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      .+  +|  +..|.++|+++      ++++|.|+++.|+..  ......+..--..-|.++  .-|.+.+....|..++++
T Consensus       221 ~~p~~peFl~~L~k~C~~~------~vl~I~DEV~tG~gR--~g~~~a~e~~~~~PDI~t--~aK~L~gGlPigA~~v~~  290 (433)
T KOG1401|consen  221 IIPADPEFLIGLRKECDDN------GVLLIFDEVQTGLGR--LGYGWAQEYFGVTPDITT--VAKPLGGGLPIGATGVRD  290 (433)
T ss_pred             cccCCHHHHHHHHHHHhhc------CceEEeehhhhCccc--cchHHHHHHhCcCCccee--ehhhccCCceeEEEeehH
Confidence            44  32  57889999999      999999999987543  211111111111345555  458877778889999987


Q ss_pred             C
Q 018437          293 K  293 (356)
Q Consensus       293 ~  293 (356)
                      +
T Consensus       291 k  291 (433)
T KOG1401|consen  291 K  291 (433)
T ss_pred             H
Confidence            5

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.03  E-value=0.00034  Score=68.80  Aligned_cols=173  Identities=12%  Similarity=0.023  Sum_probs=91.2

Q ss_pred             ChHHHHH--HHHHHhcccCC-CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDK--LVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~--~i~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      .+|.+.+  ++.+.+..-.. .........+...++.+.++++.+ +..   ...+.++++|+||+..|++.++......
T Consensus        62 ~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~-p~~---~~~v~f~~SGsEAve~AlKlAr~~~~~~  137 (443)
T PRK08297         62 NHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLG-DPE---LPHLFFVDGGALAVENALKVAFDWKSRK  137 (443)
T ss_pred             CChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcC-CCC---CCEEEEeCchHHHHHHHHHHHHHHhhcc
Confidence            3467777  77665543110 111000111233345556666652 111   1247899999999999999998753211


Q ss_pred             HHhcCCC-CCCCeEEecCC-CcchHHHHHHhhCCe-----------eEEEEecCCcc--------------ccCHHHHHH
Q 018437          145 RKEQGKP-YDKPNIVTGAN-VQVCWEKFARYFEVE-----------LKEVKLEEGYY--------------VMNPVKAVE  197 (356)
Q Consensus       145 ~~~~g~~-~~~~~vi~s~~-~h~s~~~~~~~~G~~-----------v~~v~~~~~~~--------------~~d~~~L~~  197 (356)
                      +...|.+ ..+.+||.-.. .|-...-+....|..           ...+|.....+              .-|++++++
T Consensus       138 ~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (443)
T PRK08297        138 NEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARA  217 (443)
T ss_pred             ccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHH
Confidence            1011210 11345665444 443333233222211           00111110000              013456667


Q ss_pred             HHh---hCceEEEEecCCCccccc----CCHHHHHHHHHHhhhccCCCCcEEEecccccc
Q 018437          198 LVD---ENTICVAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (356)
Q Consensus       198 ~i~---~~~~~v~~~~~~~~tG~~----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~  250 (356)
                      .+.   +++.+|++.-....-|.+    ..+++|.++|++|      |+++++|+++.|+
T Consensus       218 ~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~------g~llI~DEV~tGf  271 (443)
T PRK08297        218 AFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEH------DALLIFDEVQTGV  271 (443)
T ss_pred             HHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhcc
Confidence            775   356677766555555655    5689999999999      9999999999764

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=97.93  E-value=0.00049  Score=67.85  Aligned_cols=173  Identities=12%  Similarity=0.002  Sum_probs=94.8

Q ss_pred             CChHHHHHHHHHH-hcccC-CCc-ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMAS-INKNY-VDM-DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        67 ~~~~~v~~~i~~~-~~~~~-~~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      +.+|.+.+++.+. ..... ..+ ...+...++.+.+.+.+.+++.-+.     ....++++|+||+..|++.++..+..
T Consensus        74 h~~p~i~~Ai~~q~~~~~l~~~~~~~~~~~~~la~~l~~~l~~~~p~~~-----~~v~f~~SGsEAvE~AlKlAr~~~~~  148 (464)
T TIGR00699        74 YNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKVAPKGQ-----DQVWTGMSGSDANELAFKAAFMYYRS  148 (464)
T ss_pred             CCCHHHHHHHHHHHHHHhhcccccCCcHHHHHHHHHHHHhHHhhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence            3457788887753 12111 111 1112233344444443445543111     24789999999999999999875432


Q ss_pred             H-HHh----cCC---------CCC--CCeEEecCC-CcchHHHHHHhhCC-----------eeEEEEecCCcc-------
Q 018437          144 K-RKE----QGK---------PYD--KPNIVTGAN-VQVCWEKFARYFEV-----------ELKEVKLEEGYY-------  188 (356)
Q Consensus       144 ~-~~~----~g~---------~~~--~~~vi~s~~-~h~s~~~~~~~~G~-----------~v~~v~~~~~~~-------  188 (356)
                      . |..    .|.         ..+  +.+||.-.. .|-...-+....|-           .+..+|.....+       
T Consensus       149 ~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~  228 (464)
T TIGR00699       149 KQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVK  228 (464)
T ss_pred             cCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccc
Confidence            1 000    000         001  125665444 45443333333221           122333221000       


Q ss_pred             ------ccCHHHHHHHHhh---CceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccc
Q 018437          189 ------VMNPVKAVELVDE---NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (356)
Q Consensus       189 ------~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~  250 (356)
                            .-+++.|++++.+   ++.+|++--.....|.+-+    +++|.++|++|      |+++++|+++.|+
T Consensus       229 ~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~------g~lLI~DEV~tGf  297 (464)
T TIGR00699       229 ENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH------NVAFIVDEVQTGV  297 (464)
T ss_pred             cchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeeeeeCC
Confidence                  1135667777753   4667777766666677766    99999999999      9999999998764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.92  E-value=0.00051  Score=68.02  Aligned_cols=274  Identities=14%  Similarity=0.067  Sum_probs=145.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCCC-cccccccCCCChHHHHHHHHHH---hcc-cCCCcccCcchHHHHHHHHHHHHHHh
Q 018437           34 DNSMPKEAAYQVINDELMLDGNPR-LNLASFVTTWMEPECDKLVMAS---INK-NYVDMDEYPVTTELQNRCVNMIAHLF  108 (356)
Q Consensus        34 ~~~~~~~~i~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~v~~~i~~~---~~~-~~~~~~~~~~~~~le~~~~~~la~l~  108 (356)
                      +.+..+.++++.++++...+.-.+ |.-.+|..+..++.+..-+.+.   +.+ .+++++.+++..+-.-..+.+++++.
T Consensus        97 ~~~~~E~eml~~l~~ia~kNk~~ksfIGmGYyn~~vP~~I~RNilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlT  176 (1001)
T KOG2040|consen   97 DKPLCESEMLQHLEDIASKNKIWKSFIGMGYYNTHVPAVILRNILENPGWYTQYTPYQAEISQGRLESLLNYQTMITDLT  176 (1001)
T ss_pred             CCCcCHHHHHHHHHHHHhhhhHHHHhhccccccccCcHHHHHHhhhCCcceeccCCCchhhhhhhHHHHhhhHHhhhhcc
Confidence            457889999999988776543111 1111333344444433222111   111 22333445565555556788999999


Q ss_pred             CCCCCCCCCCCeEEeCChh---HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHH----hhCCeeEEE
Q 018437          109 NTPVADDKTAVGVGTVGSS---EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR----YFEVELKEV  181 (356)
Q Consensus       109 g~~~~~~~~~~~~~t~Ggt---~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~----~~G~~v~~v  181 (356)
                      |++..+     ...---||   ||+.++...-+               +.+.++....|+.....++    -+|+++...
T Consensus       177 GL~~aN-----ASLLDEgTAaaEAm~l~~~~~k---------------rkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~  236 (1001)
T KOG2040|consen  177 GLPMAN-----ASLLDEGTAAAEAMALCNRINK---------------RKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS  236 (1001)
T ss_pred             CCcccc-----hhhhccchhHHHHHHHHHhhcc---------------cceEEecCCCCcchhhhhhccccccceeEEec
Confidence            999733     22222223   33333222111               3468888999987665555    234443333


Q ss_pred             EecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc
Q 018437          182 KLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW  261 (356)
Q Consensus       182 ~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~  261 (356)
                      +..         +. ....++...|.+.+|.+. |.+.|.+++++.++..      +..+++-.-.-.  +..+++  +-
T Consensus       237 ~~~---------~~-~~s~~~v~gvlvQYP~t~-G~i~d~~el~~~a~~~------~s~vv~atDLLa--LtiLrp--Pg  295 (1001)
T KOG2040|consen  237 DIK---------EA-DYSSKDVSGVLVQYPDTE-GSVLDFDELVELAHAN------GSLVVMATDLLA--LTILRP--PG  295 (1001)
T ss_pred             CHH---------Hh-hccccceeEEEEEcCCCC-CcccCHHHHHHHhhcc------CceEEEeehhhH--HHccCC--hh
Confidence            221         11 112345678999999998 9999999999999999      776555322221  111222  22


Q ss_pred             cccCCCceEEEEcCCcCCCCCcC-----eeEEEEeCCCCCccccccc-----cCCCC----------------CCCCCcc
Q 018437          262 DFRLPLVKSINVSGHKYGLVYAG-----VGWVVWRTKDDLPDELVFH-----INYLG----------------SDQPTFT  315 (356)
Q Consensus       262 ~~~~~~~Ds~~~~~hK~l~~P~g-----~g~l~~~~~~~~~~~~~~~-----~~~~~----------------~~~~~~~  315 (356)
                      .   .|+|...-|++.++ +|.|     .|++.+++.  +.+.++-.     ..-.+                ....+. 
T Consensus       296 e---fGaDIavGSsQRFG-VPlGYGGPHAaFfAv~~~--l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATS-  368 (1001)
T KOG2040|consen  296 E---FGADIAVGSSQRFG-VPLGYGGPHAAFFAVSES--LVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATS-  368 (1001)
T ss_pred             h---cCceeeeccccccC-ccccCCCchHHHHHHHHH--HHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccch-
Confidence            3   38999998888874 5543     444444321  11110000     00000                000011 


Q ss_pred             ccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          316 LNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       316 ~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      -.||-++.-+--...+.-++|.+|++++.++....+-+|+
T Consensus       369 NICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~  408 (1001)
T KOG2040|consen  369 NICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILA  408 (1001)
T ss_pred             hhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHH
Confidence            1144444322222234456899999999999887766553

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=97.85  E-value=0.00094  Score=62.79  Aligned_cols=179  Identities=17%  Similarity=0.059  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCC----CCCCCeEEecCCCcchHHHHHHhh
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK----PYDKPNIVTGANVQVCWEKFARYF  174 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~----~~~~~~vi~s~~~h~s~~~~~~~~  174 (356)
                      ++++.+++++|++.++     +++...+|..++.=+.+.  .+.-. ..+|.    ...+.+.++|.|+|-.....++.+
T Consensus        73 e~r~l~a~llgv~~~~-----viv~gNSSL~lM~d~i~~--a~~~G-~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~  144 (425)
T PF12897_consen   73 EARELFAELLGVPPEN-----VIVGGNSSLNLMHDTISR--AMLHG-VPGSETPWCKEEKVKFLCPVPGYDRHFAITEHF  144 (425)
T ss_dssp             HHHHHHHHHHTS-GGG-----EEE-SS-HHHHHHHHHHH--HHHH---TT-SS-GGGSS--EEEEEES--HHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCHHH-----EEEeccchHHHHHHHHHH--HHhcC-CCCCCCCchhccCceEEecCCCchHHHHHHHhh
Confidence            6677799999999732     554444444443322221  11100 00000    012358999999999999999999


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhC--ceEEE-EecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDEN--TICVA-AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~--~~~v~-~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~  251 (356)
                      |++.+.||.+++  -.|++.+++.+.++  .+.|+ +---+||+|.+-.=+.+.+++.=.+.-+  +..+.-|.||....
T Consensus       145 Giemi~VpM~~d--GPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~--DFRI~WDNAY~vHh  220 (425)
T PF12897_consen  145 GIEMIPVPMTED--GPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAP--DFRIFWDNAYAVHH  220 (425)
T ss_dssp             T-EEEEEEEETT--EE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SST--T-EEEEE-TTTT-B
T ss_pred             CcEEEecCCCCC--CCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCc--CeEEEeecCceEee
Confidence            999999999875  68999999999654  34443 3445799999966666666654211111  88999999998644


Q ss_pred             ccccCCCCc---cccc-------CCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          252 APFLYPDLE---WDFR-------LPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       252 ~~~~~~~~~---~~~~-------~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      +  ......   .++-       .+.--.+..|..|--+...|.+++...
T Consensus       221 L--~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS  268 (425)
T PF12897_consen  221 L--YDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAAS  268 (425)
T ss_dssp             S--SSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-
T ss_pred             c--cccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecC
Confidence            3  111111   1110       223344556788877777777777654

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=97.80  E-value=0.00046  Score=64.60  Aligned_cols=201  Identities=14%  Similarity=-0.031  Sum_probs=110.6

Q ss_pred             CCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEE-ecCCCcchHHHHHHhhCCeeEEEEecCC----------
Q 018437          118 AVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIV-TGANVQVCWEKFARYFEVELKEVKLEEG----------  186 (356)
Q Consensus       118 ~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi-~s~~~h~s~~~~~~~~G~~v~~v~~~~~----------  186 (356)
                      ....|+++|||||-+|++.++.++.           .-.+| .....|-+-..++...|....+-+.+..          
T Consensus       110 ~~vfF~nsGsEANelal~mar~Yt~-----------~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~P  178 (442)
T KOG1404|consen  110 KVVFFVNSGSEANELALKMARLYTG-----------NLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNP  178 (442)
T ss_pred             eEEEEecCCchHHHHHHHHHHHhcC-----------CceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCC
Confidence            3489999999999999999988732           12444 4455566555555555555443332210          


Q ss_pred             ---c--cc-------cC--HHHHHHHHhh----CceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEe
Q 018437          187 ---Y--YV-------MN--PVKAVELVDE----NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVD  244 (356)
Q Consensus       187 ---~--~~-------~d--~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD  244 (356)
                         .  +.       -|  .++|++.+..    ...+.++-.-.-.-|.+.+    +++..++||++      |.+++.|
T Consensus       179 dp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~------Ggl~IaD  252 (442)
T KOG1404|consen  179 DPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKR------GGLFIAD  252 (442)
T ss_pred             CcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHc------CCEEEeh
Confidence               0  00       00  1344444432    2344555555555566643    78999999999      9999999


Q ss_pred             cccccccccccCCCCcccccCC--CceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCCh
Q 018437          245 AASGGFIAPFLYPDLEWDFRLP--LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGS  322 (356)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~--~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~  322 (356)
                      +++.|+..  ..  .-+.|.-.  --|.++  .-|.++.....|.+++.. +.. ..+.....+..    +  . +..+.
T Consensus       253 EVqtGfGR--tG--~~wgfe~h~v~PDIvT--mAKgiGnG~Pl~AVvtt~-EIa-~v~~~~~~~fn----T--y-ggnP~  317 (442)
T KOG1404|consen  253 EVQTGFGR--TG--HMWGFESHGVVPDIVT--MAKGIGNGFPLGAVVTTP-EIA-DVLNQKSSHFN----T--Y-GGNPV  317 (442)
T ss_pred             hhhhcccc--cc--ccccccccCCCccHHH--HHhhccCCCcceeeecCH-HHH-HHHHhcccccc----c--c-CCCch
Confidence            99988654  11  12222211  123333  458877778888887753 222 22222221111    1  1 23334


Q ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          323 SQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       323 ~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      . .+...+.|+.+-++.+   .+++.+...||
T Consensus       318 a-~avg~aVL~Vikee~L---qE~aa~vG~yl  345 (442)
T KOG1404|consen  318 A-CAVGLAVLKVIKEENL---QENAAEVGSYL  345 (442)
T ss_pred             h-HHHHHHHHHHHHHHhH---HHHHHHHHHHH
Confidence            3 3333466776665553   34445555444

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=97.65  E-value=0.0034  Score=65.99  Aligned_cols=91  Identities=11%  Similarity=-0.008  Sum_probs=55.1

Q ss_pred             HHHHHHHhh--------CceEEEEecC-CCcccccC----CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC
Q 018437          193 VKAVELVDE--------NTICVAAILG-STLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL  259 (356)
Q Consensus       193 ~~L~~~i~~--------~~~~v~~~~~-~~~tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~  259 (356)
                      +.+++.|++        +..+|++--. ...-|.+-    -++.+.++|++|      |+++|+|+++.|+..  .....
T Consensus       567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~------gilLI~DEV~TGfGR--tG~~f  638 (817)
T PLN02974        567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSR------KIPVIFDEVFTGLWR--LGVES  638 (817)
T ss_pred             HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeecccCCCc--ccchh
Confidence            556666642        3445554432 34446552    278999999999      999999999988643  11100


Q ss_pred             cccccCCCceEEEEcCCcCCCCCc-CeeEEEEeCC
Q 018437          260 EWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRTK  293 (356)
Q Consensus       260 ~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l~~~~~  293 (356)
                      ..+..--..|.+++  -|.+.+.+ ..|.++++++
T Consensus       639 a~e~~gv~PDIi~~--gKgLtgG~~Plaa~l~~~~  671 (817)
T PLN02974        639 AWELLGCKPDIACY--AKLLTGGLVPLAATLATEE  671 (817)
T ss_pred             hHHhcCCCCCEEee--cccccCCCCccEEEEEcHH
Confidence            11111113577774  48876663 6788887653

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=97.61  E-value=0.0013  Score=59.10  Aligned_cols=259  Identities=16%  Similarity=0.037  Sum_probs=145.8

Q ss_pred             ccccccCCCChHHHHHHHHHHhcccCCCc---cc---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeC-ChhHHHH
Q 018437           59 NLASFVTTWMEPECDKLVMASINKNYVDM---DE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTV-GSSEAIM  131 (356)
Q Consensus        59 ~l~~~~~~~~~~~v~~~i~~~~~~~~~~~---~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~-Ggt~a~~  131 (356)
                      |++.+-..-|.+.+.++-.+.+|-+....   +.   +.....+.+.....+.+|+++|+.    ..+++.- |||.-..
T Consensus        10 nFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn----~~vlf~QGGGt~qFa   85 (370)
T KOG2790|consen   10 NFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDN----YKVLFLQGGGTGQFA   85 (370)
T ss_pred             ecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCc----eeEEEEeCCCccccc
Confidence            44443333344566777777777543332   22   346677788889999999999963    3455555 4554332


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCc--cccCHHHHHHHHhhCceEEEEe
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGY--YVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~--~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      .....+.. .     ..|.  .-+.|++..-+--++..+-++.-...+..+..+.+  -..|.+.++.  +++...|..|
T Consensus        86 Av~lNL~g-l-----K~g~--~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~~da~yvyyC  155 (370)
T KOG2790|consen   86 AVPLNLIG-L-----KHGR--CADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWEL--NPDASYVYYC  155 (370)
T ss_pred             ccchhhhc-c-----ccCC--ccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhccc--CCCccEEEEe
Confidence            22222221 0     0110  12478877777667777666533323333333221  1234444433  3455689999


Q ss_pred             cCCCccccc-CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEE
Q 018437          210 LGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       210 ~~~~~tG~~-~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      ...|..|+= +++.    +-.-+      +..++.|-....     ++.  ++|+.  ..+.+....+|.. +|.|.-++
T Consensus       156 aNETVHGVEf~~~P----~~~~~------~~vlVaDmSSnf-----lSr--pvDvs--k~gvi~aGAQKN~-G~aG~Tvv  215 (370)
T KOG2790|consen  156 ANETVHGVEFDFIP----VNDPK------GAVLVADMSSNF-----LSR--PVDVS--KFGVIFAGAQKNV-GPAGVTVV  215 (370)
T ss_pred             cCceeeceecCCCC----CCCCC------CceEEEecccch-----hcC--Cccch--hcceEEecccccc-CccccEEE
Confidence            999998874 3333    11123      889999976543     221  45654  4577888899997 79999999


Q ss_pred             EEeCCCCCccccccccCCCCCC--CCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccC
Q 018437          289 VWRTKDDLPDELVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCP  352 (356)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~  352 (356)
                      ++|+. ++.......+.-+.+.  ..+.++..|.+...+...-..++.+-.. |++.+.+...+.++
T Consensus       216 ivr~d-llg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~Ksk  281 (370)
T KOG2790|consen  216 IVRKD-LLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSK  281 (370)
T ss_pred             EEehh-hhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHH
Confidence            99874 4433333333322222  1233466788877666666666665433 45555555554444

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.0091  Score=56.15  Aligned_cols=148  Identities=13%  Similarity=-0.001  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCee
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v  178 (356)
                      .+-+.+++++|.+.       .++-+-|-.++..++-++..+             ++.+++-...+..+++..+..--.+
T Consensus       143 dlE~~iakF~G~E~-------aivYs~gF~ti~S~ipafsKr-------------GDIi~~de~~nfaIq~GlqlSRS~i  202 (467)
T KOG1358|consen  143 DLEKRIAKFMGTED-------AIVYSYGFSTIESAIPAFSKR-------------GDIIFVDEAVNFAIQKGLQLSRSTI  202 (467)
T ss_pred             ccHHHHHHhhCCcc-------eeeeccccchhhhcchhhhcc-------------CcEEEEehhhhHHHHHHHhhhhhee
Confidence            33344999999985       344444444455556555442             5788888888888888877655455


Q ss_pred             EEEEecCCccccCHHHHHHHHhhC-------------ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          179 KEVKLEEGYYVMNPVKAVELVDEN-------------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~~-------------~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      ++..      ..|.+.|+..+.+.             .+.|++-.---++|.+.|+.+|.++..+|      ...+++|+
T Consensus       203 ~~Fk------hndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Ky------k~RvildE  270 (467)
T KOG1358|consen  203 SYFK------HNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKY------KFRVILDE  270 (467)
T ss_pred             EEec------CCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhh------eEEEEEec
Confidence            4443      22556665554321             24677777788899999999999999999      99999999


Q ss_pred             ccccccccccCCCC--cccccCCCceEEEEcCCcC
Q 018437          246 ASGGFIAPFLYPDL--EWDFRLPLVKSINVSGHKY  278 (356)
Q Consensus       246 a~~~~~~~~~~~~~--~~~~~~~~~Ds~~~~~hK~  278 (356)
                      .+..+++.-...-.  -+.+....+|.++.+.--.
T Consensus       271 s~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~a  305 (467)
T KOG1358|consen  271 SLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETA  305 (467)
T ss_pred             ccccccccccCccccccCCCCccceeeeeeccccc
Confidence            98877664211100  1222234678888775433

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=97.17  E-value=0.0061  Score=56.37  Aligned_cols=184  Identities=17%  Similarity=0.133  Sum_probs=113.9

Q ss_pred             HHhhhcCCCC-ccccccc--CCC----ChHHHHHHHHHHhcccCC-CcccCcchHHHHHHHHHHHHHH-hCCCCCC--CC
Q 018437           48 DELMLDGNPR-LNLASFV--TTW----MEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHL-FNTPVAD--DK  116 (356)
Q Consensus        48 ~~~~~~~~~~-~~l~~~~--~~~----~~~~v~~~i~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l-~g~~~~~--~~  116 (356)
                      +.+..+.+|. .||+.+.  ...    ..+.|+++-.+..+.+.. .|..-.+..++.+.    .+++ +|.+.+.  ..
T Consensus        44 eAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~----sakLa~G~~s~~ik~~  119 (427)
T KOG1411|consen   44 EAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKL----SAKLALGDNSPVIKEK  119 (427)
T ss_pred             HHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHH----HHHHhhcCCchhhhcc
Confidence            3444555555 4554332  111    226676665544443222 12222355555443    3343 5554321  12


Q ss_pred             CCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEe-cCCccccCHHHH
Q 018437          117 TAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKA  195 (356)
Q Consensus       117 ~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L  195 (356)
                      ....+-|-+||.|+..+-.-+...+           ....|++|.|++....+.-...|+.+..... +..+..+|.+.+
T Consensus       120 Ri~tvQ~lSGTGaLriga~Fl~~f~-----------~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~  188 (427)
T KOG1411|consen  120 RIVTVQTLSGTGALRVGAEFLARFY-----------PSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGM  188 (427)
T ss_pred             ceeEEEeccCcchhhHHHHHHHhhc-----------cccceeecCCcccccCccccccCcceeeeeeccccccccchHHH
Confidence            2334455578888766654433321           1357999999998877777788998877776 444578898877


Q ss_pred             HHHHhh---CceEEEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccc
Q 018437          196 VELVDE---NTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       196 ~~~i~~---~~~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~  252 (356)
                      -+.+.+   ...++.--+.+||||+=   +..++|.++.++.      +.+-++|.||-||..
T Consensus       189 ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k------~~~pffDmAYQGfaS  245 (427)
T KOG1411|consen  189 LEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEK------NLLPFFDMAYQGFAS  245 (427)
T ss_pred             HHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhc------cccchhhhhhccccc
Confidence            776664   33556667789999863   5678899999999      999999999988654

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=97.15  E-value=0.01  Score=54.29  Aligned_cols=128  Identities=13%  Similarity=0.121  Sum_probs=90.9

Q ss_pred             hCCCCCC--CCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe-eEEEEe-
Q 018437          108 FNTPVAD--DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-LKEVKL-  183 (356)
Q Consensus       108 ~g~~~~~--~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~-v~~v~~-  183 (356)
                      +|.+...  .+...++-+-+||.|+..+.--+...+           .+..|++|.|++.......+-.|.. +...+. 
T Consensus        88 lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~-----------~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yW  156 (410)
T KOG1412|consen   88 LGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFY-----------NKNTVYVSNPTWENHHAIFEKAGFTTVATYPYW  156 (410)
T ss_pred             cCCCchhhhhccccceeeccccchhhhhHHHHHHhc-----------ccceeEecCCchhHHHHHHHHcCCceeeeeeee
Confidence            5665421  234557888899999887755443321           1357999999999988888888844 555565 


Q ss_pred             cCCccccCHHHHHHHHhhCc---eEEEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccc
Q 018437          184 EEGYYVMNPVKAVELVDENT---ICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       184 ~~~~~~~d~~~L~~~i~~~~---~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~  252 (356)
                      |.++-.+|++.+...|+..|   ..|.-.+..||||.=   +-..+|+++.++.      +.+-..|-||-|+..
T Consensus       157 d~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k------~lf~fFDiAYQGfAS  225 (410)
T KOG1412|consen  157 DAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSK------NLFPFFDIAYQGFAS  225 (410)
T ss_pred             cCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhc------Cceeeeehhhccccc
Confidence            33457899999998887654   334445568999963   3467899999988      899999999987654

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.04  E-value=0.0072  Score=50.41  Aligned_cols=63  Identities=10%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             cccCcchHHHHHHHHHHHHHHhC--CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 018437           87 MDEYPVTTELQNRCVNMIAHLFN--TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (356)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g--~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h  164 (356)
                      |..+.+..++++++++++.+.+|  ++.+   ...+++|+|++.++..+++++.++             ++.|+++.|.|
T Consensus        88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~---pd~Ivvt~Ga~~al~~l~~~l~dp-------------GD~VlVp~P~Y  151 (153)
T PLN02994         88 FQDYHGLANFRKAIANFMAEARGGRVKFD---ADMIVLSAGATAANEIIMFCIADP-------------GDAFLVPTPYY  151 (153)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCCCccc---hhheEEcCCHHHHHHHHHHHHcCC-------------CCEEEEeCCCC
Confidence            44566889999999999999988  3321   135899999999999999988764             67999999987


Q ss_pred             c
Q 018437          165 V  165 (356)
Q Consensus       165 ~  165 (356)
                      +
T Consensus       152 ~  152 (153)
T PLN02994        152 A  152 (153)
T ss_pred             C
Confidence            5

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=96.79  E-value=0.0087  Score=55.64  Aligned_cols=171  Identities=15%  Similarity=0.161  Sum_probs=92.0

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCC-eEEecCCCcchHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP-NIVTGANVQVCWE  168 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~-~vi~s~~~h~s~~  168 (356)
                      +....+||+.+++ |-++.|--..  +...+++.+|+|+-++.++.++....        .....| .||.+.|.|++|.
T Consensus        42 ~f~s~eL~~~Ir~-LH~~VGNAvt--~gr~IV~GtGsTQL~~AalyALSp~~--------~~~~~p~~VVa~aPYY~~Y~  110 (363)
T PF04864_consen   42 WFISPELERQIRR-LHRVVGNAVT--DGRYIVFGTGSTQLFNAALYALSPNA--------SPSSSPASVVAAAPYYSSYP  110 (363)
T ss_dssp             TTS-HHHHHHHHH-HHHHH-SB----TTSEEEEECHHHHHHHHHHHHHCHHT---------TTSSSEEEEE-SS--CHHH
T ss_pred             eeccHHHHHHHHH-HHHHhccccc--cCcEEEEcCCHHHHHHHHHHhcCCCC--------CCCCCCceeEecCCCccchH
Confidence            3345677766554 4555554432  23558999999999988888774420        011234 8999999999999


Q ss_pred             HHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccc
Q 018437          169 KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASG  248 (356)
Q Consensus       169 ~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~  248 (356)
                      ...+.+.-..-...=|...+. +      .-...+.+=++|+||||-|.+-  +   .+++.-      +..+|.|-||-
T Consensus       111 ~qt~~f~s~~y~w~Gda~~~~-~------~~~~~~~IElVTSPNNPDG~lr--~---~V~~g~------~~k~I~D~AYY  172 (363)
T PF04864_consen  111 EQTDFFDSRLYKWAGDASNFK-N------SDNPSPYIELVTSPNNPDGQLR--E---AVLNGS------SGKVIHDLAYY  172 (363)
T ss_dssp             HHCCCT-BTTEEEEEECCCGT-T-------S-CCGEEEEEESS-TTT-----------SSTTT------EEEEEEE-TT-
T ss_pred             HHHHhccccCccccccHHhhc-c------CCCCCCeEEEEeCCCCCccccc--c---hhcCCC------Ccceeeeeeee
Confidence            988877555333333333232 1      1112456667899999999873  1   123434      66789999986


Q ss_pred             cccccccCCCCcccccCCCceEEEEcCCcC-CCCCcCeeEEEEeCCCCC
Q 018437          249 GFIAPFLYPDLEWDFRLPLVKSINVSGHKY-GLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~-l~~P~g~g~l~~~~~~~~  296 (356)
                      .   |.+.|-.   -. ..=|.+-+...|. +.+....|+.++||++..
T Consensus       173 W---PhyTpI~---~~-aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va  214 (363)
T PF04864_consen  173 W---PHYTPIT---AP-ADHDIMLFTLSKLTGHAGSRFGWALVKDEEVA  214 (363)
T ss_dssp             S---TTTS------S--B--SEEEEEHHHHCS-GGG-EEEEEES-HHHH
T ss_pred             c---ccccccC---CC-CCCceEEEEEecccCccccccceeeecCHHHH
Confidence            5   3333211   11 1236777777784 778889999999986443

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=92.30  E-value=1.4  Score=40.39  Aligned_cols=151  Identities=13%  Similarity=-0.005  Sum_probs=78.1

Q ss_pred             eEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhh------CC---e---eEEEEecC--
Q 018437          120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF------EV---E---LKEVKLEE--  185 (356)
Q Consensus       120 ~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~------G~---~---v~~v~~~~--  185 (356)
                      ..|+++|||||-+|++.+|+..+          .++.|.+-...|--+...++.-      |.   +   |...|+.+  
T Consensus       105 c~F~NSGSEANDLALRLAR~ftk----------hqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvy  174 (452)
T KOG1403|consen  105 CFFVNSGSEANDLALRLARNFTK----------HQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVY  174 (452)
T ss_pred             EEEecCCchhhHHHHHHHHhhcc----------cCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCcccc
Confidence            68999999999999999988521          1233433333333232222211      11   1   22233321  


Q ss_pred             -Cccc-----------cCHHHHHHHHhh------CceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEE
Q 018437          186 -GYYV-----------MNPVKAVELVDE------NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHV  243 (356)
Q Consensus       186 -~~~~-----------~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~v  243 (356)
                       ..++           .=.+.+++.+++      ...+.+.-+-.+--|.+.|    ++++++..+.+      |-.+|.
T Consensus       175 rGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~a------GGv~Ia  248 (452)
T KOG1403|consen  175 RGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSA------GGVCIA  248 (452)
T ss_pred             ccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcC------CCeEEe
Confidence             0011           112344444432      2233333344444466543    57788888888      999999


Q ss_pred             ecccccccccccCCCCcccccC--CCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          244 DAASGGFIAPFLYPDLEWDFRL--PLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       244 D~a~~~~~~~~~~~~~~~~~~~--~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      |+++-||..  . ..+-|.|+.  .-.|.++  ..|-++-....+.+..+
T Consensus       249 DEVQvGFGR--v-G~hyWafq~y~fiPDIVt--mgKpmGNGhPVa~Vatt  293 (452)
T KOG1403|consen  249 DEVQVGFGR--V-GSHYWAFQTYNFIPDIVT--MGKPMGNGHPVAAVATT  293 (452)
T ss_pred             ehhhhcccc--c-chhhhhhhhhccccchhe--ecccCCCCCeeeEEecc
Confidence            999977544  2 222344431  1234444  34555555556666554

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=87.88  E-value=4.2  Score=38.34  Aligned_cols=80  Identities=14%  Similarity=0.192  Sum_probs=48.6

Q ss_pred             HHHHHHHHhh-----Cce-EEEEecCCCcc----cccCCHHHHHHHHHHhhhccCCCCcEEEeccccccccc-ccCCCCc
Q 018437          192 PVKAVELVDE-----NTI-CVAAILGSTLT----GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP-FLYPDLE  260 (356)
Q Consensus       192 ~~~L~~~i~~-----~~~-~v~~~~~~~~t----G~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~-~~~~~~~  260 (356)
                      ++++++.|.+     ++. ++++---...-    ++.+-+..+.+++++|      ++.++||++|.|+... -+..+..
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh------~v~fivDEVQTGgGaTGk~WaHeh  328 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH------GVAFIVDEVQTGGGATGKFWAHEH  328 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhc------CeEEEeeeeecCCCccCceeeehh
Confidence            4567777753     233 34433333332    3446689999999999      9999999998654431 1122222


Q ss_pred             ccccCCCceEEEEcCCcCC
Q 018437          261 WDFRLPLVKSINVSGHKYG  279 (356)
Q Consensus       261 ~~~~~~~~Ds~~~~~hK~l  279 (356)
                      +++. .-.|.+++| .|+.
T Consensus       329 w~l~-~PpD~vTFS-KK~q  345 (484)
T KOG1405|consen  329 WNLD-SPPDVVTFS-KKFQ  345 (484)
T ss_pred             cCCC-CCccceehh-hhhh
Confidence            3443 357998876 4554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
3hbx_A	502	Crystal Structure Of Gad1 From Arabidopsis Thaliana		1e-172
1pmm_A	466	Crystal Structure Of Escherichia Coli Gadb (Low Ph)		3e-93
1xey_A	466	Crystal Structure Of The Complex Of Escherichia Col		4e-93
2dgk_A	452	Crystal Structure Of An N-terminal Deletion Mutant		1e-91
3mbb_A	514	Crystal Structure Of Stspl - Apo Form, After Treatm		1e-11
3mc6_C	497	Crystal Structure Of Scdpl1 Length = 497		1e-11
3maf_B	518	Crystal Structure Of Stspl (Asymmetric Form) Length		1e-11
3mc6_A	497	Crystal Structure Of Scdpl1 Length = 497		6e-11
3mau_A	514	Crystal Structure Of Stspl In Complex With Phosphoe		6e-11
3mad_A	514	Crystal Structure Of Stspl (Symmetric Form) Length		7e-11
3maf_A	518	Crystal Structure Of Stspl (Asymmetric Form) Length		7e-11
3f9t_A	397	Crystal Structure Of L-tyrosine Decarboxylase Mfna		9e-08

>pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana Length = 502

Iteration: 1
 Score =  599 bits (1544), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 276/338 (81%), Positives = 306/338 (90%)
Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S   ++S   + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct: 61  ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYF      
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                GYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGH YGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHXYGLVYAGIGWVIWRNKEDLPEEL 300
Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHE 338

>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph) Length = 466

Iteration: 1
 Score =  338 bits (866), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 166/349 (47%), Positives = 225/349 (64%), Gaps = 2/349 (0%)
Query: 8   TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
           TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct: 7   TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66
Query: 67  WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
           W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct: 67  WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126
Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
           SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185
Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
              M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245
Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
           SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV 355
           LG    TF +NFS+ + Q+IAQYY+F+RLG E  T    +S +V  +L 
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLA 354

>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada With Glutarate At 2.05 A Resolution Length = 466

Iteration: 1
 Score =  337 bits (865), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 166/349 (47%), Positives = 225/349 (64%), Gaps = 2/349 (0%)
Query: 8   TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
           TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct: 7   TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66
Query: 67  WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
           W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct: 67  WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126
Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
           SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185
Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
              M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245
Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
           SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV 355
           LG    TF +NFS+ + Q+IAQYY+F+RLG E  T    +S +V  +L 
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLA 354

>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of Escherichia Coli Gadb In An Autoinhibited State (aldamine) Length = 452

Iteration: 1
 Score =  333 bits (853), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 161/340 (47%), Positives = 219/340 (64%), Gaps = 1/340 (0%)
Query: 16  STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKL 75
           S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL
Sbjct: 2   SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKL 61
Query: 76  VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135
           +  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+
Sbjct: 62  MDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 121
Query: 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKA 195
           A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + 
Sbjct: 122 AMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRM 180
Query: 196 VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255
           +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+
Sbjct: 181 IEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240
Query: 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315
            PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF 
Sbjct: 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFA 300
Query: 316 LNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV 355
           +NFS+ + Q+IAQYY+F+RLG E  T    +S +V  +L 
Sbjct: 301 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLA 340

>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment With Semicarbazide Length = 514

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 93/243 (38%), Gaps = 27/243 (11%)
Query: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
             N +  D +P T + +   V M AH+     A   T  G  T G +E+++LA +   R 
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
           W +  K        P  V   +    ++K A+YF            Y   +     E + 
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
            NT+ VA        G  + +  +  L  +           HVDA  GGFI P+     Y
Sbjct: 238 PNTVVVAGSAPGXPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
           P   +DFRL  V S++   HKYG    G   +++R  D          D P  L F   +
Sbjct: 292 PVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 307 LGS 309
            GS
Sbjct: 352 AGS 354

>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1 Length = 497

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 19/259 (7%)
Query: 83  NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142
           N +  D +P   ++++  V+M+  +FN P     T  G  T G +E+++LA L+ K    
Sbjct: 95  NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYAL 151
Query: 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDEN 202
             R        +P I+        ++K A YF             Y ++  K  + +++N
Sbjct: 152 HHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
Query: 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPD 258
           T+ +     +   G  +D++ L  +  K      +  P+HVD+  G FI  F+    Y +
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKN 260
Query: 259 LEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN 317
           L   DFR+P V SI+   HKYG    G   +++R  D    +   +  + G    + TL 
Sbjct: 261 LPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLA 320
Query: 318 FSKGSSQIIAQYYQFIRLG 336
            S+  + ++  +   + +G
Sbjct: 321 GSRPGAIVVGCWATMVNMG 339

>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form) Length = 518

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 93/243 (38%), Gaps = 27/243 (11%)
Query: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
             N +  D +P T + +   V M AH+     A   T  G  T G +E+++LA +   R 
Sbjct: 129 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 186
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
           W +  K        P  V   +    ++K A+YF            Y   +     E + 
Sbjct: 187 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 241
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
            NT+ VA        G  + +  +  L  +           HVDA  GGFI P+     Y
Sbjct: 242 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 295
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
           P   +DFRL  V S++   HKYG    G   +++R  D          D P  L F   +
Sbjct: 296 PVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 355
Query: 307 LGS 309
            GS
Sbjct: 356 AGS 358

>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1 Length = 497

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 112/259 (43%), Gaps = 19/259 (7%)
Query: 83  NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142
           N +  D +P   ++++  V+M+  +FN P     T  G  T G +E+++LA L+ K    
Sbjct: 95  NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYAL 151
Query: 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDEN 202
             R        +P I+        ++K A YF             Y ++  K  + +++N
Sbjct: 152 HHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
Query: 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPD 258
           T+ +     +   G  +D++ L  +  K      +  P+HVD+  G FI  F+    Y +
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKN 260
Query: 259 LEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN 317
           L   DFR+P V SI+   H YG    G   +++R  D    +   +  + G    + TL 
Sbjct: 261 LPLLDFRVPGVTSISCDTHXYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLA 320
Query: 318 FSKGSSQIIAQYYQFIRLG 336
            S+  + ++  +   + +G
Sbjct: 321 GSRPGAIVVGCWATMVNMG 339

>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With Phosphoethanolamine Length = 514

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 92/243 (37%), Gaps = 27/243 (11%)
Query: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
             N +  D +P T + +   V M AH+     A   T  G  T G +E+++LA +   R 
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
           W +  K        P  V   +    ++K A+YF            Y   +     E + 
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
            NT+ VA        G  + +  +  L  +           HVDA  GGFI P+     Y
Sbjct: 238 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
           P   +DFRL  V S++   H YG    G   +++R  D          D P  L F   +
Sbjct: 292 PVPPFDFRLEGVTSVSADTHAYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 307 LGS 309
            GS
Sbjct: 352 AGS 354

>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form) Length = 514

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 92/243 (37%), Gaps = 27/243 (11%)
Query: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
             N +  D +P T + +   V M AH+     A   T  G  T G +E+++LA +   R 
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
           W +  K        P  V   +    ++K A+YF            Y   +     E + 
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
            NT+ VA        G  + +  +  L  +           HVDA  GGFI P+     Y
Sbjct: 238 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
           P   +DFRL  V S++   H YG    G   +++R  D          D P  L F   +
Sbjct: 292 PVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 307 LGS 309
            GS
Sbjct: 352 AGS 354

>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form) Length = 518

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 92/243 (37%), Gaps = 27/243 (11%)
Query: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
             N +  D +P T + +   V M AH+     A   T  G  T G +E+++LA +   R 
Sbjct: 129 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 186
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
           W +  K        P  V   +    ++K A+YF            Y   +     E + 
Sbjct: 187 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 241
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
            NT+ VA        G  + +  +  L  +           HVDA  GGFI P+     Y
Sbjct: 242 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 295
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
           P   +DFRL  V S++   H YG    G   +++R  D          D P  L F   +
Sbjct: 296 PVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 355
Query: 307 LGS 309
            GS
Sbjct: 356 AGS 358

>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 102/263 (38%), Gaps = 47/263 (17%)
Query: 70  PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129
           P   K+V   +  N  D   +  T  L+ + V ++  L N     +K A G    G +EA
Sbjct: 44  PITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLN-----NKDAYGHIVSGGTEA 98
Query: 130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYV 189
            + A    K  W++KR++     + P I+        +EK                  Y+
Sbjct: 99  NLXALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREXXDLE----------YI 148
Query: 190 MNPVKAVELVDENTI----------CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
             P+K    +DE  +           +  I G+T  G  ++++ L  +  + N       
Sbjct: 149 YAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENN------I 202
Query: 240 PIHVDAASGGFIAPFLYP-------DLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT 292
            IHVDAA GG + PFL         + ++DF L  V SI +  HK G      G ++++ 
Sbjct: 203 YIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLG-VDSITIDPHKXGHCPIPSGGILFKD 261
Query: 293 KDDLPDELVFHINYLGSDQPTFT 315
                   + +  YL  D P  T
Sbjct: 262 --------IGYKRYLDVDAPYLT 276

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	1e-151
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	1e-150
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	1e-131
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	1e-118
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	1e-114
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	6e-17
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	3e-14
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	1e-12
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	1e-12
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	4e-11
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	5e-11
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502

 Score =  434 bits (1118), Expect = e-151
 Identities = 287/338 (84%), Positives = 317/338 (93%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S   ++S   + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct: 61  ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHE 338

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452

 Score =  430 bits (1107), Expect = e-150
 Identities = 161/323 (49%), Positives = 220/323 (68%), Gaps = 1/323 (0%)

Query: 16  STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKL 75
           S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL
Sbjct: 2   SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKL 61

Query: 76  VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135
           +  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+
Sbjct: 62  MDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 121

Query: 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKA 195
           A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   M+P + 
Sbjct: 122 AMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRM 180

Query: 196 VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255
           +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+
Sbjct: 181 IEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240

Query: 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315
            PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF 
Sbjct: 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFA 300

Query: 316 LNFSKGSSQIIAQYYQFIRLGFE 338
           +NFS+ + Q+IAQYY+F+RLG E
Sbjct: 301 INFSRPAGQVIAQYYEFLRLGRE 323

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397

 Score =  379 bits (976), Expect = e-131
 Identities = 67/316 (21%), Positives = 125/316 (39%), Gaps = 24/316 (7%)

Query: 32  MPDNSMPKEAAYQVINDELMLDGNPR-LNLASFVTTWMEPECDKLVMASINKNYVDMDEY 90
           M +  + ++   + +     LD      N+   + + + P   K+V   +  N  D   +
Sbjct: 5   MQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLPITRKIVDIFLETNLGDPGLF 64

Query: 91  PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK 150
             T  L+ + V ++  L N        A G    G +EA ++A    K  W++KR++   
Sbjct: 65  KGTKLLEEKAVALLGSLLNNK-----DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLS 119

Query: 151 PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTI-CVAAI 209
             + P I+        +EK     ++E     ++E  Y ++     + V++  +  +  I
Sbjct: 120 KNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED-YTIDEKFVKDAVEDYDVDGIIGI 178

Query: 210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP-------DLEWD 262
            G+T  G  ++++ L  +  + N        IHVDAA GG + PFL         + ++D
Sbjct: 179 AGTTELGTIDNIEELSKIAKENN------IYIHVDAAFGGLVIPFLDDKYKKKGVNYKFD 232

Query: 263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGS 322
           F L  V SI +  HK G      G ++++        L     YL   +   T+  ++  
Sbjct: 233 FSLG-VDSITIDPHKMGHCPIPSGGILFKDI-GYKRYLDVDAPYLTETRQA-TILGTRVG 289

Query: 323 SQIIAQYYQFIRLGFE 338
                 Y     LG E
Sbjct: 290 FGGACTYAVLRYLGRE 305

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score =  351 bits (903), Expect = e-118
 Identities = 73/339 (21%), Positives = 121/339 (35%), Gaps = 25/339 (7%)

Query: 8   TDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTW 67
              R  +          A +PR  +P   +  E A     +            AS     
Sbjct: 52  ASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDG----YASGAVYH 107

Query: 68  MEPECDKLV----MASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT 123
            +      +          N +  D +P T + +   V M AH+     A   T  G  T
Sbjct: 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVT 166

Query: 124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL 183
            G +E+++LA   ++   +       K    P  V   +    ++K A+YF ++L    L
Sbjct: 167 SGGTESLLLAMKTYRDWARAT-----KGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPL 221

Query: 184 EEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV 243
           +   Y  +     E +  NT+ VA        G  + +  +  L  +           HV
Sbjct: 222 DA-DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHV 274

Query: 244 DAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299
           DA  GGFI P+     YP   +DFRL  V S++   HKYG    G   +++R  D L  +
Sbjct: 275 DACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQ 334

Query: 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
                ++ G    + T   S+  +     +   + LG E
Sbjct: 335 YFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE 373

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497

 Score =  341 bits (875), Expect = e-114
 Identities = 71/329 (21%), Positives = 140/329 (42%), Gaps = 25/329 (7%)

Query: 21  RYVRAAIPRFKMPDNSMPKEAAYQVIND--ELMLDGNPRLNLASFVTTWMEPECDKLVMA 78
           R     +   ++P N +P++   + +N   +L+     +    S        +   L   
Sbjct: 27  RSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTI 86

Query: 79  SINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134
           +  K    N +  D +P   ++++  V+M+  +FN P     T  G  T G +E+++LA 
Sbjct: 87  AYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLAC 143

Query: 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVK 194
           L+ K      R        +P I+        ++K A YF ++L+ V+L+   Y ++  K
Sbjct: 144 LSAKMYALHHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGK 198

Query: 195 AVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF 254
             + +++NT+ +     +   G  +D++ L  +  K      +  P+HVD+  G FI  F
Sbjct: 199 VKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSF 252

Query: 255 LYPDL-----EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGS 309
           +           DFR+P V SI+   HKYG    G   +++R  D    +   +  + G 
Sbjct: 253 MEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGG 312

Query: 310 DQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
              + TL  S+  + ++  +   + +G  
Sbjct: 313 LYGSPTLAGSRPGAIVVGCWATMVNMGEN 341

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 80.5 bits (198), Expect = 6e-17
 Identities = 26/214 (12%), Positives = 60/214 (28%), Gaps = 30/214 (14%)

Query: 91  PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK 150
              + +      ++   F            + T  S+   +   L+  RK          
Sbjct: 126 SGASIMYALTNKILESFFKQL---GLNVHAIATPISTGMSISLCLSAARKK--------- 173

Query: 151 PYDKPNIVTGANVQVCWEKFARYFEVELKEV--KLEEGYYVMNPVKAVELVDE-----NT 203
            Y    ++          K   +  + ++ V   L+     +        + +     N 
Sbjct: 174 -YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNR 232

Query: 204 ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEWD 262
            CV + L        +D+  +  +         +D P  ++ A       +L      + 
Sbjct: 233 PCVLSTLTFFPPRNSDDIVEIAKICEN------YDIPHIINGAYAIQNNYYLEKLKKAFK 286

Query: 263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL 296
           +R+    ++  S  K  L   G G V     + +
Sbjct: 287 YRVD---AVVSSSDKNLLTPIGGGLVYSTDAEFI 317

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 57/321 (17%), Positives = 112/321 (34%), Gaps = 34/321 (10%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLD----GNPRLNLASFVTTWMEPE-CDKLV 76
           Y+RA +P    P++    ++ +  I   +M       +P    A +      P     ++
Sbjct: 42  YLRAQLPES-APEDPDSWDSIFGDIERIIMPGVVHWQSPH-MHAYYPALTSWPSLLGDML 99

Query: 77  MASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-----VADDKTAVGVGTVGSSEAIM 131
             +IN         P  TEL+   ++ +A +   P             GV     SE+ +
Sbjct: 100 ADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTL 159

Query: 132 LAGLAFKRKWQQKRKEQGKPYDKPN------IVTGANVQVCWEKFARYFEVELKEVKLEE 185
           +A LA ++    + K      D+ +                 EK      V++K + +++
Sbjct: 160 IALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDD 219

Query: 186 GYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
            +  +      + ++E+       + V A LG+T    F+ +  L  +      E  W  
Sbjct: 220 NF-SLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPIC---AREGLW-- 273

Query: 240 PIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD 298
            +H+DAA  G    FL P+     + +    S   +  K+ +V+        + K  L  
Sbjct: 274 -LHIDAAYAG--TAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQ 330

Query: 299 ELVFHINYLGSDQPTFTLNFS 319
               +  YL         +F 
Sbjct: 331 TFSVNPIYLRHANSGVATDFM 351

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 58/329 (17%), Positives = 109/329 (33%), Gaps = 52/329 (15%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
           Y++  IP    P+     +   Q I   +M            VT W  P+          
Sbjct: 37  YLKPLIPDA-APEKPEKWQDVMQDIERVIMPG----------VTHWHSPKFHAYFPTANS 85

Query: 73  -----DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP----VADDKTAVGVGT 123
                  ++  +I          P  TEL+   ++ +  +   P            GV  
Sbjct: 86  YPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQ 145

Query: 124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPN------IVTGANVQVCWEKFARYFEVE 177
             +SE+ ++A L  K K  ++ KE    +D+                   E+      V+
Sbjct: 146 GTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVK 205

Query: 178 LKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231
           L+ V+ E   + M      + ++++             LG+T +  F+ +     +    
Sbjct: 206 LRSVQSEN--HRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVG--- 260

Query: 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVW 290
           N+   W   IHVDAA  G  + F+ P+     + +    S N + HK+ LV      +  
Sbjct: 261 NKHNLW---IHVDAAYAG--SAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWL 315

Query: 291 RTKDDLPDELVFHINYLGSDQPTFTLNFS 319
           +    + +       YL  D      ++ 
Sbjct: 316 KDPSWVVNAFNVDPLYLKHDMQGSAPDYR 344

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 62/321 (19%), Positives = 105/321 (32%), Gaps = 51/321 (15%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
           Y+R  IP    P      E   Q +   +M            VT W  P           
Sbjct: 37  YLRPLIP-ATAPQEPDTFEDILQDVEKIIM----------PGVTHWHSPYFFAYFPTASS 85

Query: 73  -----DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP----VADDKTAVGVGT 123
                  ++  +I          P  TEL+   ++ +  +   P      +     GV  
Sbjct: 86  YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145

Query: 124 VGSSEAIMLAGLA----FKRKWQQKRKEQGKPYDKPNIV--TGANVQVCWEKFARYFEVE 177
             +SEA ++A LA      R+ Q       +      +V           E+      V+
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205

Query: 178 LKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231
           LK +  +  +  M      E ++ +         V A LG+T    F+++  +  +    
Sbjct: 206 LKAIPSDGKF-AMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC--- 261

Query: 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVW 290
           +EE  W   +HVDAA  G  + F+ P+       +    S N + HK+ LV      +  
Sbjct: 262 HEEDIW---LHVDAAYAG--SAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV 316

Query: 291 RTKDDLPDELVFHINYLGSDQ 311
           + + DL         YL    
Sbjct: 317 KRRTDLTGAFKLDPVYLKHSH 337

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 49/318 (15%), Positives = 108/318 (33%), Gaps = 58/318 (18%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
            +  AI    + + + P ++    + + +                   P+C         
Sbjct: 63  ALEDAINAVDLDNKNAPLKSVIDDVAELVA----------KNAIFTQHPDCIAHLHTPPL 112

Query: 73  ------DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
                 +  ++A++N++    D+    T ++ + VN +   ++      + A G+ T G 
Sbjct: 113 MPAVAAE-AMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS----EKADGIFTSGG 167

Query: 127 SEAIMLAGLA-----FKRKWQQKRKEQGKPYDKPN--IVTGANVQVCWEKFARYF---EV 176
           +++  +  +        +      ++ G P       IV         +K A +    E 
Sbjct: 168 TQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEK 227

Query: 177 ELKEVKLEEGYYVMNPV---KAV-ELVDENTI--CVAAILGSTLTGEFEDVKLLHDLLTK 230
            +  V        M+     + + +   E  I   +    G+T  G  +D+  + D+   
Sbjct: 228 AVMTVDANAD-GTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMA-- 284

Query: 231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVV 289
             +   W   +HVD A GG     +    +   + +    SI+V  HK        G ++
Sbjct: 285 -VKHDMW---MHVDGAYGG---ALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALL 337

Query: 290 WRTKDDLPDELVFHINYL 307
              K +    L+ H +YL
Sbjct: 338 VNDKSNF-KFLLHHADYL 354

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 52/310 (16%), Positives = 101/310 (32%), Gaps = 44/310 (14%)

Query: 22  YVRAAIPRF--KMPDNSMPKEAAYQVINDELMLD---GNPR--------LNLASFVTTWM 68
            +   +  F  ++ D+    E       D L      G+PR        L++      W+
Sbjct: 54  QLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWL 113

Query: 69  EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128
                    ++ N N    +  PV   ++   +  +  +        K   G+ + G + 
Sbjct: 114 --------TSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWS---SKDGDGIFSPGGAI 162

Query: 129 AIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCWEKFARYF---EVELKEVKLE 184
           + M + +A + K+  + K +G     K  + T        +K           +  +K  
Sbjct: 163 SNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN 222

Query: 185 EGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD 238
           E    + P      + E          V A  G+T+ G F+ ++ + D+     +   W 
Sbjct: 223 E-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADIC---EKYNLW- 277

Query: 239 TPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP 297
             +HVDAA GG     +          +    S+  + HK   V      ++ + K  L 
Sbjct: 278 --LHVDAAWGG--GLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQ 333

Query: 298 DELVFHINYL 307
                   YL
Sbjct: 334 GCNQMCAGYL 343

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 47/309 (15%), Positives = 99/309 (32%), Gaps = 46/309 (14%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLD---GNPR--------LNLASFVTTWMEP 70
            ++  +   ++      ++   +     +      G+PR        L+  +     +  
Sbjct: 73  ELKQLLD-LELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDPHALAGRII-- 129

Query: 71  ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130
                   S+N +    +  PV   ++   +  +  L      D     G+   G S + 
Sbjct: 130 ------TESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGD-----GIFCPGGSISN 178

Query: 131 MLAGLAFKRKWQQKRKEQG-KPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEG 186
           M A    + +     K++G +      + T        +K A +       ++ VK +E 
Sbjct: 179 MYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADER 238

Query: 187 YYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
              M P      +            V+A  G+T+ G F+ ++ + D+         W   
Sbjct: 239 -GKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVC---QRHGLW--- 291

Query: 241 IHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDD-LPD 298
           +HVDAA GG  +  L          +    S+  + HK          ++ +   + L  
Sbjct: 292 LHVDAAWGG--SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKR 349

Query: 299 ELVFHINYL 307
                 +YL
Sbjct: 350 CHGSQASYL 358

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 52/371 (14%), Positives = 112/371 (30%), Gaps = 136/371 (36%)

Query: 6   TETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRL------N 59
           T  + + +L      +Y+             +P+E           L  NPR       +
Sbjct: 299 TPDEVKSLLL-----KYL-------DCRPQDLPREV----------LTTNPRRLSIIAES 336

Query: 60  LASFVTTW---MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLF--NTPVAD 114
           +   + TW       CDKL   +I ++ +++ E     E + +  + ++ +F  +  +  
Sbjct: 337 IRDGLATWDNWKHVNCDKL--TTIIESSLNVLE---PAEYR-KMFDRLS-VFPPSAHI-- 387

Query: 115 DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF 174
                          I+L+ +     W           D   +V          K  +Y 
Sbjct: 388 -------------PTILLSLI-----WFDV-----IKSDVMVVV---------NKLHKYS 415

Query: 175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD-LLTKKNE 233
            VE K+ K E    + +                  +   L  + E+   LH  ++   N 
Sbjct: 416 LVE-KQPK-ESTISIPS------------------IYLELKVKLENEYALHRSIVDHYNI 455

Query: 234 ETGWD----TPIHVDAASGGFIA---------------PFLYPDLEWDFRLPLVKSINVS 274
              +D     P ++D      I                  ++ D  +      ++     
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF------LEQ---- 505

Query: 275 GHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT------LNFSKGSSQ--II 326
             K  + +    W    +  +   +L F+  Y+  + P +       L+F     +  I 
Sbjct: 506 --K--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Query: 327 AQYYQFIRLGF 337
           ++Y   +R+  
Sbjct: 562 SKYTDLLRIAL 572

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	100.0
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	100.0
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	100.0
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	100.0
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	100.0
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	100.0
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	100.0
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	100.0
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	100.0
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	100.0
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.98
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.97
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.96
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.94
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.94
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.94
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.94
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.94
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.94
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.93
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.93
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.93
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.93
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.93
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.93
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.93
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.93
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.93
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.92
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.92
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.92
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.92
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.92
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.92
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.91
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.91
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.91
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.91
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.91
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.9
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.9
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.9
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.9
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.9
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.89
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.89
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.89
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.89
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.88
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.88
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.88
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.88
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.88
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.88
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.88
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.87
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.87
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.87
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.87
1svv_A	359	Threonine aldolase; structural genomics, structura	99.87
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.87
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.87
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.87
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.86
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.86
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.86
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.86
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.86
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.86
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.86
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.86
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.86
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.86
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.86
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.86
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.86
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.86
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.85
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.85
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.85
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.85
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.85
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.85
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.85
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.85
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.85
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.85
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.85
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.85
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.84
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.84
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.84
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.84
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.84
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.84
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.84
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.84
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.84
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.84
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.84
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.83
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.83
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.83
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.83
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.83
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.83
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.82
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.82
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.82
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.82
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.82
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.82
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.82
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.82
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.82
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.82
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.82
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.82
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.81
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.81
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.81
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.81
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.81
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.81
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.81
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.8
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.8
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.8
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.8
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.8
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.8
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.8
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.8
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.79
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.79
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.79
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.79
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.79
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.79
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.79
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.79
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.79
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.78
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.78
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.78
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.78
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.78
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.78
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.78
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.77
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.77
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.77
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.77
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.77
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.77
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.77
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.77
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.77
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.76
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.76
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.62
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.76
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.76
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.76
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.75
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.75
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.75
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.75
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.75
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.75
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.75
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.75
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.75
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.75
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.74
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.74
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.74
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.74
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.74
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.74
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.73
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.73
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.73
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.73
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.73
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.72
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.72
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.71
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.71
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.71
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.69
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.69
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.68
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.68
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.67
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.67
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.65
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.64
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.64
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.63
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.63
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.61
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.6
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.6
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.59
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.59
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.58
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.57
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.57
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.56
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.56
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.55
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.55
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.55
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.55
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.55
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.54
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.53
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.52
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.51
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.51
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.51
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.5
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.48
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.48
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.45
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.4
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.32
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.31
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	98.77
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.03
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	98.78
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	98.72
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.34

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=100.00  E-value=4.9e-50  Score=397.68  Aligned_cols=355  Identities=81%  Similarity=1.314  Sum_probs=308.1

Q ss_pred             CCCCCCCCCccccccccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHh
Q 018437            1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASI   80 (356)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~   80 (356)
                      ||++.+.++....+.+.|+++|+...+|+..+|+.+.+..++++.+++.+.+++||.+|+.+|+++++++.+.+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l~gnp~~~l~s~~t~~~~~~v~~~l~~~~   80 (502)
T 3hbx_A            1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSI   80 (502)
T ss_dssp             -----------CCCSCTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGGSCCGGGBTTCCSCCCCCHHHHHHHHHTT
T ss_pred             CCcccccCCCcccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhccCCCCCceeccccCCCCCHHHHHHHHHHh
Confidence            78999899999999999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             cccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEec
Q 018437           81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG  160 (356)
Q Consensus        81 ~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s  160 (356)
                      +.+..++..+|...++|+++++++++++|++.+......+++|+|||+||++++++++.++..+++..|....+++||++
T Consensus        81 ~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~  160 (502)
T 3hbx_A           81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTG  160 (502)
T ss_dssp             TCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEE
T ss_pred             ccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEc
Confidence            98888888899999999999999999999983222335578899999999999999998887766666755556699999


Q ss_pred             CCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCc
Q 018437          161 ANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (356)
Q Consensus       161 ~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~  240 (356)
                      .++|+++.++++.+|++++.||++++++.+|+++|+++++++|++|++++|+|++|.++|+++|.++|++++++++.++|
T Consensus       161 ~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~  240 (502)
T 3hbx_A          161 ANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP  240 (502)
T ss_dssp             TTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCC
T ss_pred             CCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCe
Confidence            99999999999999999999999875599999999999999999999999999999999999999999999777777999


Q ss_pred             EEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCC
Q 018437          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSK  320 (356)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr  320 (356)
                      +|||+||++++.||+.+..++++...++|++++++|||+++|.|+|+++++++..+...+.....|+++....+++.+||
T Consensus       241 l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr  320 (502)
T 3hbx_A          241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSK  320 (502)
T ss_dssp             EEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSC
T ss_pred             EEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCc
Confidence            99999999988887777777777778999999999999999999999999887666555555678888766566778999


Q ss_pred             ChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          321 GSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       321 ~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ++..++++|+++..+|.+|++++++++.+++++|+
T Consensus       321 ~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~  355 (502)
T 3hbx_A          321 GSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLR  355 (502)
T ss_dssp             BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98889999999999999999999999999998874

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=100.00  E-value=2.1e-46  Score=366.90  Aligned_cols=340  Identities=49%  Similarity=0.887  Sum_probs=271.8

Q ss_pred             cccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhcccCCCcccCcchH
Q 018437           15 SSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTT   94 (356)
Q Consensus        15 ~~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~   94 (356)
                      ++.|++......+++.++|+.|++.+++++.+.+....++.+..++..|.++++++.+.+++.++++.+..+|..+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~e~~~~a~~~~~~~~~~~~~~~   80 (452)
T 2dgk_A            1 DSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSA   80 (452)
T ss_dssp             --------------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSCCCCCHHHHHHHHHTTTCBTTCTTTCHHHH
T ss_pred             CCcccchHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeCCCchHHHHHHHHHHhccCCCChhhChhHH
Confidence            35788888888888889999999999999999998866666555666666667778899999999998888888899999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhh
Q 018437           95 ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF  174 (356)
Q Consensus        95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~  174 (356)
                      ++|+++++++++++|++.++.....+++|+|||+||+++++++++.+..+++.+|...++++||++. +|+++.++++.+
T Consensus        81 ~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~  159 (452)
T 2dgk_A           81 AIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYW  159 (452)
T ss_dssp             HHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHc
Confidence            9999999999999999852100124899999999999999999876554444444332346899999 999999999999


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (356)
                      |++++.||++++++.+|+++|+++|+++|++|++++|+|+||.++|+++|+++|++++++++.++|+|||+||++++.||
T Consensus       160 G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~  239 (452)
T 2dgk_A          160 DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPF  239 (452)
T ss_dssp             TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHH
T ss_pred             CceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHh
Confidence            99999999986459999999999999999999999999999999999999999999654444499999999999988776


Q ss_pred             cCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHH
Q 018437          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR  334 (356)
Q Consensus       255 ~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~  334 (356)
                      +.+..++++...++|++++++|||+++|+++|+++++++..+...+...+.|+++...+++++++|++..++++|++++.
T Consensus       240 ~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~  319 (452)
T 2dgk_A          240 VAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLR  319 (452)
T ss_dssp             HCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHH
T ss_pred             hCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHH
Confidence            55544556666799999999999999999999999987654434444456777664334557789998779999999999


Q ss_pred             hCHHHHHHHHHHHHhccCccc
Q 018437          335 LGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       335 lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      +|.+|++++++++.+++++|.
T Consensus       320 lg~~g~~~~~~~~~~~a~~l~  340 (452)
T 2dgk_A          320 LGREGYTKVQNASYQVAAYLA  340 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998874

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=100.00  E-value=5.7e-43  Score=345.29  Aligned_cols=329  Identities=16%  Similarity=0.218  Sum_probs=263.6

Q ss_pred             ccccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhhh----cCCCCcccccccCCC--ChHHHHHHHHHHhcccCCCc
Q 018437           14 LSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTW--MEPECDKLVMASINKNYVDM   87 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~~----~~~~~~~l~~~~~~~--~~~~v~~~i~~~~~~~~~~~   87 (356)
                      +.+...+.+++..++. .+|+.|.+.+++++++.+.+..    +.||+|  .+|.+++  ++..+.+++..++|.|...|
T Consensus        34 v~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  110 (481)
T 4e1o_A           34 VTPDVQPGYLRAQLPE-SAPEDPDSWDSIFGDIERIIMPGVVHWQSPHM--HAYYPALTSWPSLLGDMLADAINCLGFTW  110 (481)
T ss_dssp             SSCCCCTTTTGGGSCS-SCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSST
T ss_pred             CCCCCCHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe--eEeCCCCCCHHHHHHHHHHHHhCcccCCc
Confidence            4444556667777775 7899999999999999998652    568876  4555443  34577889999999998899


Q ss_pred             ccCcchHHHHHHHHHHHHHHhCCCCCC-----CCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCC------CCCe
Q 018437           88 DEYPVTTELQNRCVNMIAHLFNTPVAD-----DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPN  156 (356)
Q Consensus        88 ~~~~~~~~le~~~~~~la~l~g~~~~~-----~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~------~~~~  156 (356)
                      ..+|...++|+++.+|+++++|++...     .....+++|+|||+||+++++++++++..+.+..|...      .+.+
T Consensus       111 ~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~  190 (481)
T 4e1o_A          111 ASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLV  190 (481)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeE
Confidence            999999999999999999999998521     00125899999999999999999987655443333221      2458


Q ss_pred             EEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhC------ceEEEEecCCCcccccCCHHHHHHHHHH
Q 018437          157 IVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTK  230 (356)
Q Consensus       157 vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~i~~I~~i~~~  230 (356)
                      |+++..+|+++.+++.+.|++++.||+++ +++||+++|+++|+++      +++|++++++|++|.++|+++|+++|++
T Consensus       191 v~~s~~~H~s~~~~~~~~g~~~~~v~~~~-~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~  269 (481)
T 4e1o_A          191 AYASDQAHSSVEKAGLISLVKMKFLPVDD-NFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAR  269 (481)
T ss_dssp             EEEETTSCHHHHHHHHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred             EEEcCcchHHHHHHHHhCCCceEEEEcCC-CCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHH
Confidence            99999999999999999999999999986 4999999999999764      7889999999999999999999999999


Q ss_pred             hhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCC
Q 018437          231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGS  309 (356)
Q Consensus       231 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~  309 (356)
                      |      |+|+|||+||+++..  ..++.+.... +..+|++++++|||+++|+|||+++++++..+...+.....|+..
T Consensus       270 ~------~~~lhvDaA~g~~~~--~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~  341 (481)
T 4e1o_A          270 E------GLWLHIDAAYAGTAF--LCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH  341 (481)
T ss_dssp             H------TCEEEEECTTGGGGG--GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCC
T ss_pred             c------CCeEEeehhhHHHHH--hChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccC
Confidence            9      999999999998754  3332222222 345699999999999999999999999865543343344556544


Q ss_pred             CC-------CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          310 DQ-------PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       310 ~~-------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ..       ..++++++|+.. ++++|++++.+|.+|++++++++.+++++|+
T Consensus       342 ~~~~~~~~~~~~~~~~~r~~~-~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~  393 (481)
T 4e1o_A          342 ANSGVATDFMHWQIPLSRRFR-SVKLWFVIRSFGVKNLQAHVRHGTEMAKYFE  393 (481)
T ss_dssp             TTTTTSCCGGGGSSSSCCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCcccccccCCCCcc-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            21       234577888865 8999999999999999999999999998874

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=100.00  E-value=8.6e-43  Score=343.42  Aligned_cols=328  Identities=17%  Similarity=0.183  Sum_probs=253.0

Q ss_pred             ccccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhhh----cCCCCcccccccCCCC--hHHHHHHHHHHhcccCCCc
Q 018437           14 LSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTWM--EPECDKLVMASINKNYVDM   87 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~~----~~~~~~~l~~~~~~~~--~~~v~~~i~~~~~~~~~~~   87 (356)
                      +.+...+.+++..++. ++|+.|.+.+++++++.+.+..    +.||+|  .++.+++.  +..+.+++...+|.|...|
T Consensus        29 v~~~~~p~~l~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~~  105 (475)
T 3k40_A           29 VLPEVKPGYLKPLIPD-AAPEKPEKWQDVMQDIERVIMPGVTHWHSPKF--HAYFPTANSYPAIVADMLSGAIACIGFTW  105 (475)
T ss_dssp             SSCSSCTTCSGGGSCS-SCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTB--CCSSCCCCCHHHHHHHHHHHHHCCCSSSC
T ss_pred             CCCCCCHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhccCCCCCCcCc--eeeCCCCCcHHHHHHHHHHHHhCccccCc
Confidence            4444455666777775 8999999999999999987652    568887  35554443  3477889999999998899


Q ss_pred             ccCcchHHHHHHHHHHHHHHhCCCCCC----CCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCC------CCCeE
Q 018437           88 DEYPVTTELQNRCVNMIAHLFNTPVAD----DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPNI  157 (356)
Q Consensus        88 ~~~~~~~~le~~~~~~la~l~g~~~~~----~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~------~~~~v  157 (356)
                      ..+|...++|+++.+|+++++|++.+.    .....+++|+|||+||+++++++++++..+.+..|...      .+.+|
T Consensus       106 ~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v  185 (475)
T 3k40_A          106 IASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVG  185 (475)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEE
T ss_pred             cCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEE
Confidence            999999999999999999999998521    01125899999999999999999887654333222211      12479


Q ss_pred             EecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhC------ceEEEEecCCCcccccCCHHHHHHHHHHh
Q 018437          158 VTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKK  231 (356)
Q Consensus       158 i~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~i~~I~~i~~~~  231 (356)
                      +++..+|+++.++++..|++++.||++++ + ||+++|+++|+++      |++|++++++|++|.++|+++|+++|++|
T Consensus       186 i~s~~~H~s~~~~~~~~g~~~~~v~~d~~-~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~  263 (475)
T 3k40_A          186 YCSDQAHSSVERAGLLGGVKLRSVQSENH-R-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKH  263 (475)
T ss_dssp             EEETTSCHHHHHHHHHHTCEEEEECCBTT-B-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT
T ss_pred             EECCCchHHHHHHHHHcCCceEEEECCCC-C-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHh
Confidence            99999999999999999999999999875 8 9999999999864      67899999999999999999999999999


Q ss_pred             hhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCC
Q 018437          232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD  310 (356)
Q Consensus       232 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~  310 (356)
                            |+|+|||+||+++..  ..++.+..+. +..+|++++++|||+++|+|||+++++++..+.+.+...+.|+...
T Consensus       264 ------~~~lhvD~A~~~~~~--~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~  335 (475)
T 3k40_A          264 ------NLWIHVDAAYAGSAF--ICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHD  335 (475)
T ss_dssp             ------TCEEEEECTTGGGGG--GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------
T ss_pred             ------CCeEEEeHHhHHHHH--hCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCC
Confidence                  999999999998654  2332222222 3467999999999999999999999998766544444445566432


Q ss_pred             C-------CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          311 Q-------PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       311 ~-------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      .       ..++++++|++. ++++|++++.+|.+|++++++++.+++++|+
T Consensus       336 ~~~~~~~~~~~~~~~sr~~~-~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~  386 (475)
T 3k40_A          336 MQGSAPDYRHWQIPLGRRFR-ALKLWFVLRLYGVENLQAHIRRHCNFAKQFG  386 (475)
T ss_dssp             -------------CCCGGGT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCcccccccCCCccc-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            1       235677898865 8999999999999999999999999998874

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=100.00  E-value=1.8e-41  Score=336.79  Aligned_cols=323  Identities=17%  Similarity=0.191  Sum_probs=261.0

Q ss_pred             cccchhhhhc---CCCCCCCCCCCCHHHHHHHHHHHhhh---cCCCCcccccccCCCCh--HHHHHHHHHHhcccCCCcc
Q 018437           17 TFASRYVRAA---IPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWME--PECDKLVMASINKNYVDMD   88 (356)
Q Consensus        17 ~~~~~~~~~~---~~~~~lp~~~~~~~~i~~~~~~~~~~---~~~~~~~l~~~~~~~~~--~~v~~~i~~~~~~~~~~~~   88 (356)
                      ...+.+++..   ++ .++|+.|.+.+++++++++++..   +.||+|  .+|.+++..  ..+.+++.++++.+...|.
T Consensus        52 ~~~p~~l~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~f--~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~  128 (511)
T 3vp6_A           52 FHHPHQLLEGMEGFN-LELSDHPESLEQILVDCRDTLKYGVRTGHPRF--FNQLSTGLDIIGLAGEWLTSTANTNMFTYE  128 (511)
T ss_dssp             CCCHHHHHHCBTTBC-CCCCSSCCCHHHHHHHHHHHHHTSCCTTSTTE--ESSSSCCCCHHHHHHHHHHHHHCCCSSCTT
T ss_pred             CCCHHHHHHHHhhCC-CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCc--eEeecCCCcHHHHHHHHHHHHhccCCCCcc
Confidence            3345555555   33 47899999999999999887753   467876  456665543  3667889999999888899


Q ss_pred             cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCC-CCCCeEEecCCCcchH
Q 018437           89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCW  167 (356)
Q Consensus        89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~-~~~~~vi~s~~~h~s~  167 (356)
                      .++...++|+++++|+++++|++.+   ..++++|+|||+||+.++.++++.+....+.+|.. ..+.+|++|..+|+++
T Consensus       129 ~~p~~~~le~~~~~~l~~~~g~~~~---~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~  205 (511)
T 3vp6_A          129 IAPVFVLMEQITLKKMREIVGWSSK---DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSI  205 (511)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCSS---SCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred             cCchHHHHHHHHHHHHHHHhCCCCC---CCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHH
Confidence            9999999999999999999999852   14689999999999999999987542211222321 1245899999999999


Q ss_pred             HHHHHhhCC---eeEEEEecCCccccCHHHHHHHHhhC------ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCC
Q 018437          168 EKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD  238 (356)
Q Consensus       168 ~~~~~~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~  238 (356)
                      .++++.+|+   +++.||++++ ++||+++|+++|+++      |++|++++++|++|.++|+++|+++|++|      |
T Consensus       206 ~~~~~~~g~g~~~~~~v~~d~~-~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~------~  278 (511)
T 3vp6_A          206 KKAGAALGFGTDNVILIKCNER-GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY------N  278 (511)
T ss_dssp             HHHHHHTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHH------T
T ss_pred             HHHHHHcCCCCCcEEEeecCCC-CccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHc------C
Confidence            999999998   8999999874 999999999999865      88999999999999999999999999999      9


Q ss_pred             CcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCC------
Q 018437          239 TPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ------  311 (356)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~------  311 (356)
                      +|+|||+||+++.+  ..++.+..+. ..++|++++++|||+++|.|||+++++++..+...+...+.|+....      
T Consensus       279 ~~lhvD~a~~~~~~--~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~  356 (511)
T 3vp6_A          279 LWLHVDAAWGGGLL--MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVS  356 (511)
T ss_dssp             CEEEEEETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGG
T ss_pred             CEEEEEccchhhHh--hChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccc
Confidence            99999999998776  4454444443 45789999999999999999999999987655433334456664321      


Q ss_pred             ---CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          312 ---PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       312 ---~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                         ...+++++|++. ++++|++|+.+|.+|++++++++.++++||+
T Consensus       357 ~~~~~~~~~~~r~~~-al~~~~al~~~g~~gl~~~~~~~~~~a~~l~  402 (511)
T 3vp6_A          357 YDTGDKAIQCGRHVD-IFKFWLMWKAKGTVGFENQINKCLELAEYLY  402 (511)
T ss_dssp             GCCGGGSSCSSCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccCCCCCCCCchH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence               134577888875 8999999999999999999999999999874

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=100.00  E-value=2e-40  Score=327.37  Aligned_cols=325  Identities=18%  Similarity=0.226  Sum_probs=248.0

Q ss_pred             ccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhhh----cCCCCcccccccCCCC-h-HHHHHHHHHHhcccCCCcccCc
Q 018437           18 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTWM-E-PECDKLVMASINKNYVDMDEYP   91 (356)
Q Consensus        18 ~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~~----~~~~~~~l~~~~~~~~-~-~~v~~~i~~~~~~~~~~~~~~~   91 (356)
                      ..+.++...++. ++|+.|.+.+++++.+.+.+..    +.||+|  .+|.++.+ + ..+.+++..++|.+...|..++
T Consensus        33 ~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~  109 (486)
T 1js3_A           33 VQPGYLRPLIPA-TAPQEPDTFEDILQDVEKIIMPGVTHWHSPYF--FAYFPTASSYPAMLADMLCGAIGCIGFSWAASP  109 (486)
T ss_dssp             CCTTCSGGGSCS-SCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCH
T ss_pred             CCHHHHHHhccc-cCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc--eEeCCCCCCHHHHHHHHHHHHhCcCccccccCh
Confidence            345555666765 7899999999999999987642    457776  35555443 3 4688999999988888888889


Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCC----CCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCC------CCCeEEecC
Q 018437           92 VTTELQNRCVNMIAHLFNTPVADD----KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPNIVTGA  161 (356)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~----~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~------~~~~vi~s~  161 (356)
                      ...++|+++++|+++++|++.+..    ....+++|+|||+||+++++++++.+.++++..+.+.      .+..|+++.
T Consensus       110 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~  189 (486)
T 1js3_A          110 ACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASD  189 (486)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECC
Confidence            999999999999999999985210    0134899999999999999998875433221111000      012488899


Q ss_pred             CCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCc------eEEEEecCCCcccccCCHHHHHHHHHHhhhcc
Q 018437          162 NVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEET  235 (356)
Q Consensus       162 ~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~------~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~  235 (356)
                      ++|+++.++++.+|++++.||+++ ++++|+++|+++|++++      ++|++++|+|++|.++|+++|+++|+++    
T Consensus       190 ~~h~s~~~~~~~~G~~v~~v~~d~-~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~----  264 (486)
T 1js3_A          190 QAHSSVERAGLIGGVKLKAIPSDG-KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEE----  264 (486)
T ss_dssp             TCCHHHHHHHHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT----
T ss_pred             CCcHHHHHHHHhCCCceEEeecCC-CCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHc----
Confidence            999999999999999999999986 59999999999998765      4899999999999999999999999999    


Q ss_pred             CCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCC---
Q 018437          236 GWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ---  311 (356)
Q Consensus       236 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~---  311 (356)
                        |+|+|||+||+++.+  ..++.+..+. +.++|++++++|||+++|++||+++++++..+.+.+...+.|+.+..   
T Consensus       265 --~~~lhvD~a~g~~~~--~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~  340 (486)
T 1js3_A          265 --DIWLHVDAAYAGSAF--ICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS  340 (486)
T ss_dssp             --TCEEEEECTTGGGGG--GSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------C
T ss_pred             --CCEEEEehhhHHHHH--HCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccc
Confidence              999999999998765  2333322222 45799999999999999999999999876433333333345553311   


Q ss_pred             ------CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          312 ------PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       312 ------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                            ..++++++|+.. ++++|++++.+|.+|++++++++.+++++|.
T Consensus       341 ~~~~~~~~~~~~~~rr~~-~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~  389 (486)
T 1js3_A          341 GLITDYRHWQLPLGRRFR-SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFE  389 (486)
T ss_dssp             CSCCCGGGSSSCSCCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCccccCCCCCCchh-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence                  123456787775 8999999999999999999999999998874

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=100.00  E-value=1e-39  Score=323.70  Aligned_cols=325  Identities=16%  Similarity=0.175  Sum_probs=252.5

Q ss_pred             cccccchhhhhc---CCCCCCCCCCCCHHHHHHHHHHHhhh---cCCCCcccccccCCCChH--HHHHHHHHHhcccCCC
Q 018437           15 SSTFASRYVRAA---IPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWMEP--ECDKLVMASINKNYVD   86 (356)
Q Consensus        15 ~~~~~~~~~~~~---~~~~~lp~~~~~~~~i~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~v~~~i~~~~~~~~~~   86 (356)
                      -+...+.+++..   ++ .++|+.|.+.+++++.+++.+..   .+||+|  .++.+++..+  .+.+++..++|.|...
T Consensus        47 ~~~~~p~~l~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~  123 (504)
T 2okj_A           47 LDFHHPHQLLEGMEGFN-LELSDHPESLEQILVDCRDTLKYGVRTGHPRF--FNQLSTGLDIIGLAGEWLTSTANTNMFT  123 (504)
T ss_dssp             CCCCCHHHHHSCBTTBC-CCCCSSCCCHHHHHHHHHHHHHTSCCTTCTTE--ESSSSCCCCHHHHHHHHHHHHHCCBSSC
T ss_pred             CCCCCHHHHHHHhhccC-CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCE--EEEccCCCCHHHHHHHHHHHhhccCCCc
Confidence            344445556665   55 47899999999999999886653   347776  3555555443  4467888888888888


Q ss_pred             cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCeEEecCCCcc
Q 018437           87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY-DKPNIVTGANVQV  165 (356)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~-~~~~vi~s~~~h~  165 (356)
                      |..++...++|+++++|+++++|++.+   ...+++|+|||+||+++++++++.+.+..+.+|... .+.+|+++..+|+
T Consensus       124 ~~~~~~~~~le~~~~~~la~~~g~~~~---~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~  200 (504)
T 2okj_A          124 YEIAPVFVLMEQITLKKMREIVGWSSK---DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY  200 (504)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHTCCSS---SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred             hhhChHHHHHHHHHHHHHHHHhCCCCC---CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchH
Confidence            888899999999999999999999831   145899999999999999998764211111112110 1237999999999


Q ss_pred             hHHHHHHhhCC---eeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCcccccCCHHHHHHHHHHhhhccC
Q 018437          166 CWEKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETG  236 (356)
Q Consensus       166 s~~~~~~~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~  236 (356)
                      ++.++++.+|+   +++.||++++ +++|+++|+++|++      +|++|++++|+|++|.++|+++|+++|+++     
T Consensus       201 s~~~~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~-----  274 (504)
T 2okj_A          201 SIKKAGAALGFGTDNVILIKCNER-GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY-----  274 (504)
T ss_dssp             HHHHHHHHTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHH-----
T ss_pred             HHHHHHHHcCCCcccEEEEecCCC-CCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHc-----
Confidence            99999999887   7999999864 99999999999976      589999999999999999999999999999     


Q ss_pred             CCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCC----
Q 018437          237 WDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ----  311 (356)
Q Consensus       237 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~----  311 (356)
                       |+|+|||+||+++..  ..++.+..+. +.++|++++++|||+++|++||++++++++.+...+.....|+.+..    
T Consensus       275 -g~~lhvD~a~~~~~~--~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (504)
T 2okj_A          275 -NLWLHVDAAWGGGLL--MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYD  351 (504)
T ss_dssp             -TCEEEEEETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSC
T ss_pred             -CCEEEEehhhhhHHH--hCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCccccc
Confidence             999999999998876  2333333443 34799999999999999999999999886544322223455664321    


Q ss_pred             -----CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          312 -----PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       312 -----~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                           .+++++++|++. ++++|++++.+|.+|++++++++.+++++|.
T Consensus       352 ~~~~~~~~~~~~~rr~~-~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~  399 (504)
T 2okj_A          352 VSYDTGDKAIQCGRHVD-IFKFWLMWKAKGTVGFENQINKCLELAEYLY  399 (504)
T ss_dssp             GGGCCGGGSSCSSCBCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCcccCCCCCCCCcc-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence                 123457788775 8899999999999999999999999998874

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=100.00  E-value=1.9e-38  Score=315.47  Aligned_cols=322  Identities=15%  Similarity=0.166  Sum_probs=244.9

Q ss_pred             ccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhhh---cCCCCcccccccCCCChH--HHHHHHHHHhcccCCCcccC
Q 018437           16 STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWMEP--ECDKLVMASINKNYVDMDEY   90 (356)
Q Consensus        16 ~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~v~~~i~~~~~~~~~~~~~~   90 (356)
                      +...+.+++..++ ..+|+.|.+.+++++.+++.+..   ..+|+|  .++.++.+.+  .+.+++..+.|.+...|..+
T Consensus        67 ~~~~p~~l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s  143 (515)
T 2jis_A           67 EWKEPEELKQLLD-LELRSQGESQKQILERCRAVIRYSVKTGHPRF--FNQLFSGLDPHALAGRIITESLNTSQYTYEIA  143 (515)
T ss_dssp             CCCCHHHHHHHHC-CCCCSSCCCHHHHHHHHHHHHHHSCCTTSTTE--ESSSCCCCCHHHHHHHHHHHHHCCCTTCTTTC
T ss_pred             CCCCHHHHHhhcc-cCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCe--EEEeeCCCCHHHHHHHHHHHHhccCCCchhhc
Confidence            3334455555555 47899999999999999887654   347765  3455554433  44567777777777788889


Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCC-CCCCeEEecCCCcchHHH
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~-~~~~~vi~s~~~h~s~~~  169 (356)
                      +...++|+++++|+++++|++.     ..+++|+|||+||++++.+++..+.+..+.+|.. ..+.+|+++..+|+++.+
T Consensus       144 ~~~~~le~~~~~~la~l~g~~~-----~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~  218 (515)
T 2jis_A          144 PVFVLMEEEVLRKLRALVGWSS-----GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQK  218 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSS-----CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCC-----CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHH
Confidence            9999999999999999999984     3589999999999999999876431000011210 012389999999999999


Q ss_pred             HHHhhCC---eeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCc
Q 018437          170 FARYFEV---ELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (356)
Q Consensus       170 ~~~~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~  240 (356)
                      +++.+|+   +++.||+++ ++++|+++|+++|++      +|++|++++|+|++|.++|+++|+++|+++      |+|
T Consensus       219 ~~~~~g~g~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~------g~~  291 (515)
T 2jis_A          219 GAAFLGLGTDSVRVVKADE-RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRH------GLW  291 (515)
T ss_dssp             HHHHTTSCGGGEEEECBCT-TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH------TCE
T ss_pred             HHHHcCCCCCcEEEEecCC-CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc------CCe
Confidence            9999998   899999986 499999999999976      489999999999999999999999999999      999


Q ss_pred             EEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCC-CCCccccccccCCCCCCC-------
Q 018437          241 IHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTK-DDLPDELVFHINYLGSDQ-------  311 (356)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~-~~~~~~~~~~~~~~~~~~-------  311 (356)
                      +|||+||+++..+  .+.....+. +.++|++++|+|||+++|.|||+++++++ ..+...+...+.|+.+..       
T Consensus       292 l~vD~a~~~~~~~--~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~  369 (515)
T 2jis_A          292 LHVDAAWGGSVLL--SQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVAL  369 (515)
T ss_dssp             EEEEETTGGGGGG--CTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGG
T ss_pred             EEEehhhhhHHHh--ChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccC
Confidence            9999999988773  233333333 34789999999999999999999999876 443322222345553211       


Q ss_pred             --CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          312 --PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       312 --~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                        .+++++++|... ++++|++++.+|.+|++++++++.++++||.
T Consensus       370 ~~~~~~~~~~rr~~-al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~  414 (515)
T 2jis_A          370 DTGDKVVQCGRRVD-CLKLWLMWKAQGDQGLERRIDQAFVLARYLV  414 (515)
T ss_dssp             CCGGGCSCSSCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCccc-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence              123456777765 7899999999999999999999999998874

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=100.00  E-value=1.8e-37  Score=307.06  Aligned_cols=318  Identities=18%  Similarity=0.256  Sum_probs=239.9

Q ss_pred             hhhhhcCCCCCCCCCCCCHHHHHHHHHHHhh----hcCCCCcccccccCCCChHHHHH-HHHHHhcccCCCcccCcchHH
Q 018437           21 RYVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWMEPECDK-LVMASINKNYVDMDEYPVTTE   95 (356)
Q Consensus        21 ~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~v~~-~i~~~~~~~~~~~~~~~~~~~   95 (356)
                      .+....++...+|+.|.+.+++++.+.+.+.    .+.+|+| |..+.+++.++.+.+ ++...+|.+...+..++...+
T Consensus        62 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~  140 (497)
T 2qma_A           62 KALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDC-IAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATY  140 (497)
T ss_dssp             HHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTB-CSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHH
T ss_pred             HHHHHhccccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe-eEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHH
Confidence            4456667766789999999999999987654    2567776 444445555565544 445666767667778889999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH-----HhcCCCC--CCCeEEecCCCcchHH
Q 018437           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR-----KEQGKPY--DKPNIVTGANVQVCWE  168 (356)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~-----~~~g~~~--~~~~vi~s~~~h~s~~  168 (356)
                      +|+++++|+++++|++.    ...+++|+|||+||+.+++++|+.+..++     +..|...  ++.+|+++..+|+++.
T Consensus       141 le~~~~~~la~~~g~~~----~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~  216 (497)
T 2qma_A          141 VEQKVVNWLCDKYDLSE----KADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ  216 (497)
T ss_dssp             HHHHHHHHHHHHTTCCT----TCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH
T ss_pred             HHHHHHHHHHHHhCCCC----CCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHH
Confidence            99999999999999974    13589999999999999999876533211     1122111  1237999999999999


Q ss_pred             HHHHhhCC---eeEEEEecCCccccCHHHHHHHHhhC------ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCC
Q 018437          169 KFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT  239 (356)
Q Consensus       169 ~~~~~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~  239 (356)
                      ++++.+|.   +++.||++++ +++|+++|+++|+++      +.+|++++++|++|.++|+++|.++|+++      |+
T Consensus       217 ~~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~------~~  289 (497)
T 2qma_A          217 KSASWMGLGEKAVMTVDANAD-GTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKH------DM  289 (497)
T ss_dssp             HHHHHTTSCGGGEEEECBCTT-SSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH------TC
T ss_pred             HHHHHcCCCcccEEEEecCCC-CcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHc------CC
Confidence            99999987   7999999864 999999999999764      44899999999999999999999999999      99


Q ss_pred             cEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCC------C
Q 018437          240 PIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ------P  312 (356)
Q Consensus       240 ~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~------~  312 (356)
                      |+|||+||+++..+.  + ....+. +.++|++++|+|||+++|++||+++++++..+ ..+.....|+....      .
T Consensus       290 ~l~vD~a~~~~~~~~--~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~-~~~~~~~~yl~~~~~~~~~~~  365 (497)
T 2qma_A          290 WMHVDGAYGGALILS--S-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDELPNLV  365 (497)
T ss_dssp             EEEEEETTGGGGGGS--T-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGG-GGGCC----------------
T ss_pred             EEEEehhhhHHHHhC--c-chHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHH-HHhcCCchhcCCccccCCCcc
Confidence            999999999887632  2 222222 34789999999999999999999999876544 23333344543321      1


Q ss_pred             CccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          313 TFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       313 ~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ..+++++|... ++++|++++.+|.+|+++++++..+++++|.
T Consensus       366 ~~~~~~~r~~~-al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~  407 (497)
T 2qma_A          366 DKSIATTKRFD-ALKVFMTMQNVGPKALGDMYDHLLAQTLEVA  407 (497)
T ss_dssp             ----CCSCCCT-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCchh-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            23456888775 7899999999999999999999999988864

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-36  Score=298.92  Aligned_cols=309  Identities=23%  Similarity=0.362  Sum_probs=246.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhh-c----CCCCcccccccCCCChHHHHHHHHHHhc----ccCCCcccCcchHHHHHHH
Q 018437           30 FKMPDNSMPKEAAYQVINDELML-D----GNPRLNLASFVTTWMEPECDKLVMASIN----KNYVDMDEYPVTTELQNRC  100 (356)
Q Consensus        30 ~~lp~~~~~~~~i~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~v~~~i~~~~~----~~~~~~~~~~~~~~le~~~  100 (356)
                      ..+|+.|++.+++++.+++.... +    .++++  .++.... .+.+.+++.+.++    .+..+|..+++..++|+++
T Consensus        36 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  112 (497)
T 3mc6_A           36 PQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKV--SGAVYHG-GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEV  112 (497)
T ss_dssp             SSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCB--SSSCSCC-CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCE--eeecCCC-chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHH
Confidence            47899999999999999988764 2    23333  2332222 2455555555544    3777888899999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEE
Q 018437          101 VNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE  180 (356)
Q Consensus       101 ~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~  180 (356)
                      ++++++++|++.+   ...+++|+||++|+.++++++++....+   +|  ..+++|+++.++|+++.++++..|++++.
T Consensus       113 ~~~la~~~g~~~~---~~~~~~~~ggt~a~~~a~~a~~~~~~~~---~g--~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~  184 (497)
T 3mc6_A          113 VSMVLRMFNAPSD---TGCGTTTSGGTESLLLACLSAKMYALHH---RG--ITEPEIIAPVTAHAGFDKAAYYFGMKLRH  184 (497)
T ss_dssp             HHHHHHHTTCCTT---TCCEEEESSHHHHHHHHHHHHHHHHHHH---SC--CSSCEEEEETTSCHHHHHHHHHSCCEEEE
T ss_pred             HHHHHHHhCCCCC---CCeEEEcCcHHHHHHHHHHHHHHHHHhc---CC--CCCceEEEeCCccHHHHHHHHHcCCeEEE
Confidence            9999999999831   1458999999999999999998754321   12  22368999999999999999999999999


Q ss_pred             EEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCC---
Q 018437          181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP---  257 (356)
Q Consensus       181 v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~---  257 (356)
                      ||++++++.+|+++|++++++++++|++++|+|++|.++|+++|.++|+++      |+|+|+|+||+++..+|...   
T Consensus       185 v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~------g~~livD~a~~~~~~~f~~~~~~  258 (497)
T 3mc6_A          185 VELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKY------KLPLHVDSCLGSFIVSFMEKAGY  258 (497)
T ss_dssp             ECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHT------TCCEEEETTTTHHHHGGGTTTTC
T ss_pred             EecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHh------CCEEEEECcchhhhhhhhhhhcc
Confidence            999874589999999999999999999999999999999999999999999      99999999999887765431   


Q ss_pred             -CC-cccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHh
Q 018437          258 -DL-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL  335 (356)
Q Consensus       258 -~~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~l  335 (356)
                       .. ++++...++|+++.++|||+++|.|+|+++++++............|.++...+.++.|||+...++++|++++.+
T Consensus       259 ~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l  338 (497)
T 3mc6_A          259 KNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNM  338 (497)
T ss_dssp             CSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHH
T ss_pred             cCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHH
Confidence             11 3455567899999999999999999999998865332222223345555543455677999998899999999999


Q ss_pred             CHHHHHHHHHHHHhccCccc
Q 018437          336 GFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       336 g~~G~~~~~~~~~~~a~~l~  355 (356)
                      +.+|++++.++..+++++|+
T Consensus       339 ~~~~~~~~~~~~~~~~~~l~  358 (497)
T 3mc6_A          339 GENGYIESCQEIVGAAMKFK  358 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888764

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=100.00  E-value=1.4e-34  Score=287.49  Aligned_cols=311  Identities=22%  Similarity=0.284  Sum_probs=245.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhh----cCCCCcccccccCCCC---hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHH
Q 018437           30 FKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTWM---EPECDKLVMASINKNYVDMDEYPVTTELQNRCVN  102 (356)
Q Consensus        30 ~~lp~~~~~~~~i~~~~~~~~~~----~~~~~~~l~~~~~~~~---~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~  102 (356)
                      ..+|+.|++.+++++.+++....    +.++++  .++.....   .+.+.+++....+.+...+..+++..++|+++++
T Consensus        69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~  146 (514)
T 3mad_A           69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYA--SGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVA  146 (514)
T ss_dssp             SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCB--SSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCce--EEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHH
Confidence            46789999999999999887532    334544  23222221   2355666666777788888888999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEE
Q 018437          103 MIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK  182 (356)
Q Consensus       103 ~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~  182 (356)
                      ++++++|++.+. ....+++|+||++|+..++++++++..++   .|  ..+++|+++.++|.++.++++.+|++++.||
T Consensus       147 ~la~~~g~~~~~-~~v~~~~t~ggt~a~~~al~a~~~~g~~~---~g--~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~  220 (514)
T 3mad_A          147 MTAHMLGGDAAG-GTVCGTVTSGGTESLLLAMKTYRDWARAT---KG--ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTP  220 (514)
T ss_dssp             HHHHHTTGGGGT-SCCEEEEESSHHHHHHHHHHHHHHHHHHH---HC--CSSCEEEEETTSCTHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHcCCCCcc-CCcceEEcCcHHHHHHHHHHHHHHHhhhh---cC--CCCCeEEEeCccchHHHHHHHHcCCeeEEee
Confidence            999999998311 12345999999999999999998764321   12  2247999999999999999999999999999


Q ss_pred             ecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccC----CC
Q 018437          183 LEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY----PD  258 (356)
Q Consensus       183 ~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~----~~  258 (356)
                      +++ ++.+|+++|++++++++++|++++++|++|.++|+++|.++|+++      |+|+|+|+||++++.++..    +.
T Consensus       221 ~~~-~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------~i~livDea~~~~~~~~~~~~g~~~  293 (514)
T 3mad_A          221 LDA-DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEH------GIGCHVDACLGGFILPWAERLGYPV  293 (514)
T ss_dssp             BCT-TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTTTTHHHHHHTTCCC
T ss_pred             eCC-CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHh------CCeEEEecccccccchhHHhcCCCC
Confidence            987 499999999999999999999999999999999999999999999      9999999999988765321    11


Q ss_pred             CcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHH
Q 018437          259 LEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE  338 (356)
Q Consensus       259 ~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~  338 (356)
                      ..+++...++|++++++||++++|.|+|+++++++............|.++....+++.|+++...++++|+++..++.+
T Consensus       294 ~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~  373 (514)
T 3mad_A          294 PPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE  373 (514)
T ss_dssp             CCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH
Confidence            23455566899999999999999999999999875433222222334554433334567899998889999999999999


Q ss_pred             HHHHHHHHHHhccCccc
Q 018437          339 EITFTFISSLKVCPFLV  355 (356)
Q Consensus       339 G~~~~~~~~~~~a~~l~  355 (356)
                      |+++++++..+++++|.
T Consensus       374 ~~~~~~~~~~~~~~~l~  390 (514)
T 3mad_A          374 GYLDATRRILQAADRLK  390 (514)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999888764

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.9e-33  Score=268.18  Aligned_cols=308  Identities=21%  Similarity=0.296  Sum_probs=245.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhcC---CCCcccccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHH
Q 018437           31 KMPDNSMPKEAAYQVINDELMLDG---NPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHL  107 (356)
Q Consensus        31 ~lp~~~~~~~~i~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l  107 (356)
                      .+|+.+.+..++++.+.+....+.   ++.+  .++.++++++.+.+++.+.+..+..++..+++..+++++++++++++
T Consensus         4 ~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~   81 (397)
T 3f9t_A            4 NMQEKGVSEKEILEELKKYRSLDLKYEDGNI--FGSMCSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSL   81 (397)
T ss_dssp             SCCSSCCCHHHHHHHHHHHHTTSCCGGGTCB--CSCSCCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHhhccCCCCCCCCe--EEEecCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHH
Confidence            579999999999999998765422   2333  34445566678899998888776666766778899999999999999


Q ss_pred             hCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCc
Q 018437          108 FNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGY  187 (356)
Q Consensus       108 ~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~  187 (356)
                      +|++.     ..+++|+||++|+..++.+++.++...+........+++|+++.++|+++..+++..|++++.||++++ 
T Consensus        82 ~~~~~-----~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-  155 (397)
T 3f9t_A           82 LNNKD-----AYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED-  155 (397)
T ss_dssp             TTCTT-----CEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTT-
T ss_pred             hCCCC-----CCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCC-
Confidence            99986     348999999999999999998875544332222233579999999999999999999999999999875 


Q ss_pred             cccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCC-------CC
Q 018437          188 YVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP-------DL  259 (356)
Q Consensus       188 ~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~-------~~  259 (356)
                      +.+|+++|++++++ ++++|++++|+||+|.+.|+++|.++|+++      |+++|+|++|+++..++...       ..
T Consensus       156 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~~~~~~~~~~~~~~  229 (397)
T 3f9t_A          156 YTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKEN------NIYIHVDAAFGGLVIPFLDDKYKKKGVNY  229 (397)
T ss_dssp             SSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHH------TCEEEEECTTGGGTGGGCCGGGCCTTCCC
T ss_pred             CcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHh------CCeEEEEccccchhhhhcccccccccccc
Confidence            89999999999998 899999999999999999999999999999      99999999999887765331       11


Q ss_pred             cccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHH
Q 018437          260 EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEE  339 (356)
Q Consensus       260 ~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G  339 (356)
                      .+++.. ++|+++.++||++++|.++|+++++++... +.+.....|+.... ...+.++++....+++++++..++..+
T Consensus       230 ~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~  306 (397)
T 3f9t_A          230 KFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYK-RYLDVDAPYLTETR-QATILGTRVGFGGACTYAVLRYLGREG  306 (397)
T ss_dssp             CCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGG-GGTCEECTTSSSSE-ECSSCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred             cccccc-cCCeEEEccccccCCCCCceEEEEeCHHHH-HhhccCCccccCCC-ccccccccccchHHHHHHHHHHHhHHH
Confidence            344445 899999999999999999999999875433 22222234443321 223457888777899999999999999


Q ss_pred             HHHHHHHHHhccCccc
Q 018437          340 ITFTFISSLKVCPFLV  355 (356)
Q Consensus       340 ~~~~~~~~~~~a~~l~  355 (356)
                      ++++.++..+++++|.
T Consensus       307 ~~~~~~~~~~~~~~l~  322 (397)
T 3f9t_A          307 QRKIVNECMENTLYLY  322 (397)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999888877653

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.98  E-value=1.5e-32  Score=269.02  Aligned_cols=290  Identities=14%  Similarity=0.088  Sum_probs=213.4

Q ss_pred             hhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHH-----hcccC-----C----Cccc
Q 018437           24 RAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMAS-----INKNY-----V----DMDE   89 (356)
Q Consensus        24 ~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~-----~~~~~-----~----~~~~   89 (356)
                      +..++..++|+.|++++++.+.+++....+....++  ...+++.++.+.+++...     ++.+.     .    .+..
T Consensus        50 ~~~~~~~~lp~~g~~~~~i~~~~~~~~~~~~~~yld--~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (456)
T 2z67_A           50 EDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPK--SVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASG  127 (456)
T ss_dssp             HHHHHHCSCCSSCCCHHHHHHHHHHHHTTBGGGCTT--CEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHH
T ss_pred             HHhhccCCCCCCCCCHHHHHHHHHHHHhcccccccc--ccccccccccccccccCccccccCCCccHHHHHHhhCccccc
Confidence            444556689999999999998887765544322222  222334444555554431     12111     0    1122


Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChh-HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE  168 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~  168 (356)
                      ++...++++++++++++++|++.     . +++|+||| .+|..++.+++.. .          .+++|+++.++|+++.
T Consensus       128 ~~~~~~~~~~~~~~la~~~g~~~-----~-~~~t~g~te~a~~~al~~~~~~-~----------~~~~vi~~~~~h~s~~  190 (456)
T 2z67_A          128 ASIMYALTNKILESFFKQLGLNV-----H-AIATPISTGMSISLCLSAARKK-Y----------GSNVVIYPYASHKSPI  190 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCC-----E-EEEESSCHHHHHHHHHHHHHHH-H----------CCCEEEEECCCCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCCCC-----C-EEEeCcHHHHHHHHHHHHHHHh-c----------CCCEEEEECCCcHHHH
Confidence            33578899999999999999985     3 89999999 5676677776542 1          1467888999999999


Q ss_pred             HHHHhhCCeeEEEEec--CCccccCHHHHHHHH-h----hCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcE
Q 018437          169 KFARYFEVELKEVKLE--EGYYVMNPVKAVELV-D----ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPI  241 (356)
Q Consensus       169 ~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i-~----~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l  241 (356)
                      ++++..|++++.|++.  ++++.+|+++|+++| +    .++++|+++.+||++|.++|+++|.++|+++      |+|+
T Consensus       191 ~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~------g~~v  264 (456)
T 2z67_A          191 KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENY------DIPH  264 (456)
T ss_dssp             HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHH------TCCE
T ss_pred             HHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc------CCcE
Confidence            9999999999998872  235999999999999 5    3677888999999999999999999999999      9999


Q ss_pred             EEecccccccccccCCCCccccc--CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCC
Q 018437          242 HVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFS  319 (356)
Q Consensus       242 ~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  319 (356)
                      |||+||+.+..++.    +.+..  ..++|++++|+|||+++|.|+|++++++++.+ ..+  .+.|.          |+
T Consensus       265 ~vD~A~~~~~~g~~----~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~-~~l--~~~~~----------g~  327 (456)
T 2z67_A          265 IINGAYAIQNNYYL----EKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFI-KEI--SLSYP----------GR  327 (456)
T ss_dssp             EEECTTTTTCHHHH----HHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHH-HHH--HTTSC----------SC
T ss_pred             EEECcchHHHHHhh----HHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHH-hhc--CcCCC----------CC
Confidence            99999987655321    11111  11799999999999999999999999754332 121  22333          23


Q ss_pred             CChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          320 KGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       320 r~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ++...++++|+++..++.+|++++.++..++++||.
T Consensus       328 ~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~  363 (456)
T 2z67_A          328 ASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLD  363 (456)
T ss_dssp             BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334458899999999999999999999999988874

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.97  E-value=1.6e-31  Score=257.60  Aligned_cols=291  Identities=13%  Similarity=0.068  Sum_probs=207.6

Q ss_pred             hhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCCC------------Cc-------ccccccCCCChHHHHHHHHHHhcccC
Q 018437           24 RAAIPRFKMPDNSMPKEAAYQVINDELMLDGNP------------RL-------NLASFVTTWMEPECDKLVMASINKNY   84 (356)
Q Consensus        24 ~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~------------~~-------~l~~~~~~~~~~~v~~~i~~~~~~~~   84 (356)
                      +..+..-.+|+.|++.++|...+.+...++.+.            +.       .+++|+++.  ....+++.    .|+
T Consensus        15 ~~~~~~~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~--~~~~d~l~----~~~   88 (450)
T 3bc8_A           15 RLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI--GRSGDISA----VQP   88 (450)
T ss_dssp             HHHHHHCCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB--CC-----------CC
T ss_pred             HHHHHhccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch--hHHHHHHH----hCc
Confidence            444555689999999999999998876653211            11       011233322  11223332    244


Q ss_pred             CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChh-HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC
Q 018437           85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV  163 (356)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~  163 (356)
                       .+..+|....+|+.+..|+.+++|++..    ..+++++|+| .++.+++.+++...          ..++.||++...
T Consensus        89 -~~~~~~~~~~~e~~~~~~~~~~lGlp~~----~~~~lV~GaT~~~~a~~L~aar~~~----------~~~~~viv~r~a  153 (450)
T 3bc8_A           89 -KAAGSSLLNKITNSLVLNVIKLAGVHSV----ASCFVVPMATGMSLTLCFLTLRHKR----------PKAKYIIWPRID  153 (450)
T ss_dssp             -SBHHHHHHHHHHHHHHHHHHHHHTCTTC----CEEEEESSCHHHHHHHHHHHHHHHC----------TTCCEEEEECCC
T ss_pred             -cccCCcHHHHHHHHHHHHHHHhCCCCCC----ceEEEECCHHHHHHHHHHHHcchhh----------cCCCEEEEECCc
Confidence             5556777889999999999999999862    3468999998 66666666666521          113689999999


Q ss_pred             cchHHHHHHhhCCeeEEEEec--CCccccCHHHHHHHHhh----CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCC
Q 018437          164 QVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW  237 (356)
Q Consensus       164 h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~  237 (356)
                      |.|+.+++.++|+++++|+..  ++.+.||+++|+++|++    .+.+|+.+.+++.+|.++||++|+++|++|      
T Consensus       154 HkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~------  227 (450)
T 3bc8_A          154 QKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANY------  227 (450)
T ss_dssp             CHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHC------
Confidence            999999999999999888762  33699999999999975    234555555555567899999999999999      


Q ss_pred             CCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCcccc
Q 018437          238 DTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN  317 (356)
Q Consensus       238 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (356)
                      |+|+|||+|||+.... ..+.++..+...++|+++.|+|||+++|.|++++++|+++.+. ..  ...|.+         
T Consensus       228 gi~l~VD~A~G~~~~~-~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~-~~--~~~~~g---------  294 (450)
T 3bc8_A          228 DIPHVVNNAYGLQSSK-CMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQ-DI--SKMYPG---------  294 (450)
T ss_dssp             TCCEEEECTTTTTCHH-HHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHH-HH--HHHSCS---------
T ss_pred             CCeEEEECCCchhhhh-hHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHH-HH--HHHhhc---------
Confidence            9999999999975442 1110101111258999999999999999999999998654432 21  122332         


Q ss_pred             CCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          318 FSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       318 ~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                       +.+....+.+|.++..+|.+||++.++++++++++|+
T Consensus       295 -~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~  331 (450)
T 3bc8_A          295 -RASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLS  331 (450)
T ss_dssp             -CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2223457999999999999999999999999888774

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.96  E-value=5.4e-27  Score=230.68  Aligned_cols=297  Identities=9%  Similarity=0.012  Sum_probs=213.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhcCC---CCcccccccCCCChHHHHHHHHHHhc-ccCCCcc-cCcchHHHHHHHHHHH
Q 018437           30 FKMPDNSMPKEAAYQVINDELMLDGN---PRLNLASFVTTWMEPECDKLVMASIN-KNYVDMD-EYPVTTELQNRCVNMI  104 (356)
Q Consensus        30 ~~lp~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~v~~~i~~~~~-~~~~~~~-~~~~~~~le~~~~~~l  104 (356)
                      ..+|  +++..++++.+.+....+.+   ..++|+ ..+....|.+.+.+.+.+. .+++.+. .+++..++++++++++
T Consensus        40 ~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l  116 (474)
T 1wyu_B           40 PRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYL  116 (474)
T ss_dssp             CCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHH
T ss_pred             CCCC--CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHH
Confidence            4677  79999999999887765432   223354 4444444556665554432 2333333 4778899999999999


Q ss_pred             HHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec
Q 018437          105 AHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE  184 (356)
Q Consensus       105 a~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~  184 (356)
                      ++++|++.      ..++|+||++|+..++++++.....    +|...++++|+++.++|.++..+++..|++++.||++
T Consensus       117 a~~~g~~~------~~~~~~ggt~a~~~al~~~~~~~~~----~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~  186 (474)
T 1wyu_B          117 KALTGMDA------ITLEPAAGAHGELTGILIIRAYHED----RGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG  186 (474)
T ss_dssp             HHHHTCSE------EECCCSSHHHHHHHHHHHHHHHHHH----TTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC
T ss_pred             HHHHCCCc------eeecChHHHHHHHHHHHHHHHHHHh----cCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC
Confidence            99999974      2568899999999998887653221    1210123589999999999999999999999999998


Q ss_pred             CCccccCHHHHHHHHhhCceEEEEecCCCccccc-CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc
Q 018437          185 EGYYVMNPVKAVELVDENTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF  263 (356)
Q Consensus       185 ~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~-~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~  263 (356)
                      ++ +.+|+++|++++++++++|++++|| ++|.+ +|+++|.++|+++      |+++|+|++|+.+..++.      ..
T Consensus       187 ~~-~~~d~~~L~~~i~~~t~~v~~~~pn-~~G~~~~~l~~i~~l~~~~------g~~li~Dea~~~~~~g~~------~~  252 (474)
T 1wyu_B          187 PE-GEVDLEALKRELGPHVAALMLTNPN-TLGLFERRILEISRLCKEA------GVQLYYDGANLNAIMGWA------RP  252 (474)
T ss_dssp             TT-SSBCHHHHHHHCSTTEEEEEECSSC-TTSCCCTTHHHHHHHHHHH------TCEEEEEGGGGGGTTTTC------CH
T ss_pred             CC-CCcCHHHHHHhhCCCceEEEEECCC-CCcccCCCHHHHHHHHHHc------CCEEEEeCchhhhhccCC------Cc
Confidence            64 9999999999999899999999985 79999 7999999999999      999999999976554211      11


Q ss_pred             cCCCceEEEEcCCcCCCCCc-----CeeEEEEeCCCCCccccccc-c-----CCC---CCCCC-CccccCCCChhHHHHH
Q 018437          264 RLPLVKSINVSGHKYGLVYA-----GVGWVVWRTKDDLPDELVFH-I-----NYL---GSDQP-TFTLNFSKGSSQIIAQ  328 (356)
Q Consensus       264 ~~~~~Ds~~~~~hK~l~~P~-----g~g~l~~~~~~~~~~~~~~~-~-----~~~---~~~~~-~~~~~~tr~~~~~~~~  328 (356)
                      ...++|+++.|+||++++|.     ++|+++++++ .. +.+... .     .|.   ...+. .....++.+....++.
T Consensus       253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~-l~-~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa  330 (474)
T 1wyu_B          253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LA-PYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRA  330 (474)
T ss_dssp             HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GG-GGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHH
T ss_pred             ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHH-HH-HhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHH
Confidence            11268999999999999885     6999999764 22 221100 0     000   00000 0000123345567788


Q ss_pred             HHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          329 YYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       329 ~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      |.+++.+|.++++++.++..++++||.
T Consensus       331 ~~~l~~~g~~~l~~~~~~~~~~~~~l~  357 (474)
T 1wyu_B          331 WAYIRTLGLEGLKKAAALAVLNARYLK  357 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899998999999999998888887764

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.94  E-value=2.6e-26  Score=220.39  Aligned_cols=257  Identities=12%  Similarity=0.043  Sum_probs=193.9

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      +....|..+++.+.+++.+.+.   .+  .++....+.+++++++++++|.+..    ...++|+||++|+..++.++.+
T Consensus        16 ~~~pgp~~~~~~v~~a~~~~~~---~~--~~~~~~~~~~~~~~~la~~~~~~~~----~~v~~~~sgt~al~~~~~~~~~   86 (411)
T 3nnk_A           16 LMGPGPINADPRVLRAMSSQLI---GQ--YDPAMTHYMNEVMALYRGVFRTENR----WTMLVDGTSRAGIEAILVSAIR   86 (411)
T ss_dssp             EESSSCCCCCHHHHHHHTSCCC---CT--TCHHHHHHHHHHHHHHHHHHTCCCS----EEEEEESCHHHHHHHHHHHHCC
T ss_pred             eecCCCCCCCHHHHHHhhcccc---cc--ccHHHHHHHHHHHHHHHHHhCCCCC----cEEEECCCcHHHHHHHHHHhcC
Confidence            3344455556777777654331   11  2345567788999999999999852    2367888999999999988743


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCccc
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTG  216 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG  216 (356)
                      +             +++|+++.++|++  +...++..|++++.+|++.+ +.+|+++|++++++ ++++|++++++|+||
T Consensus        87 ~-------------gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG  152 (411)
T 3nnk_A           87 P-------------GDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWG-EVFTPDQVEDAVKRIRPRLLLTVQGDTSTT  152 (411)
T ss_dssp             T-------------TCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTT
T ss_pred             C-------------CCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHhhCCCeEEEEeCCCCCcc
Confidence            2             5799999999988  88899999999999999764 89999999999987 899999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       217 ~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      .+.|+++|.++|+++      |+++|+|++++.+..+       .++...++|.++.++||++++|.|+|+++++++ ..
T Consensus       153 ~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~-------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~  218 (411)
T 3nnk_A          153 MLQPLAELGEICRRY------DALFYTDATASLGGNP-------LETDVWGLDAVSAGMQKCLGGPSGTSPITLSAR-ME  218 (411)
T ss_dssp             EECCCTTHHHHHHHH------TCEEEEECTTTBTTBC-------CCTTTTTCSEEECCSTTTTCCCSSEEEEEECHH-HH
T ss_pred             eeccHHHHHHHHHHc------CCEEEEECCcccCCcc-------cchhccCCcEEEecCccccCCCCceEEEEECHH-HH
Confidence            999999999999999      9999999998765442       333344789999999999999999999998653 21


Q ss_pred             ccccc----cccCCCCCCC-----------------------CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHh
Q 018437          297 PDELV----FHINYLGSDQ-----------------------PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLK  349 (356)
Q Consensus       297 ~~~~~----~~~~~~~~~~-----------------------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~  349 (356)
                       +.+.    ..+.|.++..                       ......+|.+....+++.++++.+..+|++++.++..+
T Consensus       219 -~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  297 (411)
T 3nnk_A          219 -EAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKL  297 (411)
T ss_dssp             -HHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             -HHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence             1110    1112222211                       00112367777778888888888888888888888887


Q ss_pred             ccCcc
Q 018437          350 VCPFL  354 (356)
Q Consensus       350 ~a~~l  354 (356)
                      ++++|
T Consensus       298 ~~~~l  302 (411)
T 3nnk_A          298 HGDAL  302 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77665

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.94  E-value=4.2e-27  Score=224.40  Aligned_cols=296  Identities=14%  Similarity=0.024  Sum_probs=204.5

Q ss_pred             hhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCCc-ccccccCCCChHHHHHHHH-HHhc-cc----CCCc-ccCc---c
Q 018437           24 RAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRL-NLASFVTTWMEPECDKLVM-ASIN-KN----YVDM-DEYP---V   92 (356)
Q Consensus        24 ~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~v~~~i~-~~~~-~~----~~~~-~~~~---~   92 (356)
                      +..+.+-.+|+.|.+...|...+.+...++.+... |.+.+.--.  .....++. ..++ .+    .++- +..|   +
T Consensus        33 ~~ll~~r~~P~~g~~d~~ie~~l~~la~mdsnn~~~~~g~GERE~--Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaG  110 (501)
T 3hl2_A           33 RLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREG--RVASALVARRHYRFIHGIGRSGDISAVQPKAAG  110 (501)
T ss_dssp             HHHHHHCCCCSSCCCHHHHHHHHHHHHTTBGGGCSSCCCCSSCCC--CCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHH
T ss_pred             HHHHHcCCCCccCCCHHHHHHHHHHHHhhccCCCcccCCcccchH--HHHHHHHHhhccCcccCCCCccccccCCCCccc
Confidence            44566678999999999999999988777643221 111111111  11122222 2222 11    1111 1122   2


Q ss_pred             h----HHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH
Q 018437           93 T----TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE  168 (356)
Q Consensus        93 ~----~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~  168 (356)
                      .    .--+..+.+|++.+ |++.    .....+++|+|.+++..++++.++.+        + .+++||+|...|.|+.
T Consensus       111 ssll~~ltn~l~ld~L~~~-G~~~----~~~~flVnGsTgg~lamilaa~r~~r--------p-g~d~VIvpRn~HKSv~  176 (501)
T 3hl2_A          111 SSLLNKITNSLVLDIIKLA-GVHT----VANCFVVPMATGMSLTLCFLTLRHKR--------P-KAKYIIWPRIDQKSCF  176 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCTT----CCEEEEESSCHHHHHHHHHHHHHHHC--------T-TCCEEEEECCCCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHc-CCCC----CCcEEEECcHHHHHHHHHHHHcCccc--------C-CCCEEEEecchHHHHH
Confidence            2    23345566777777 9985    23468889999777777776655310        0 1378999999999999


Q ss_pred             HHHHhhCCeeEEEEe--cCCccccCHHHHHHHHhhC---ceEEEEecCCCc-ccccCCHHHHHHHHHHhhhccCCCCcEE
Q 018437          169 KFARYFEVELKEVKL--EEGYYVMNPVKAVELVDEN---TICVAAILGSTL-TGEFEDVKLLHDLLTKKNEETGWDTPIH  242 (356)
Q Consensus       169 ~~~~~~G~~v~~v~~--~~~~~~~d~~~L~~~i~~~---~~~v~~~~~~~~-tG~~~~i~~I~~i~~~~~~~~~~~~~l~  242 (356)
                      +++.+.|+++++|+.  +++...+|+++|+++|++.   .++++++.+++. .|.++||++|+++|++|      |+|+|
T Consensus       177 kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~------gIpll  250 (501)
T 3hl2_A          177 KSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANY------DIPHI  250 (501)
T ss_dssp             HHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHH------TCCEE
T ss_pred             HHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHc------CCeEE
Confidence            999999999999987  3335899999999999762   344444444444 45779999999999999      99999


Q ss_pred             EecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCCh
Q 018437          243 VDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGS  322 (356)
Q Consensus       243 vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~  322 (356)
                      ||+|||+...++ ...++..++..++|.++.|+||++++|.|.+++++++++.+...   ...|          +|+++.
T Consensus       251 VDeAhGah~~~~-~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~---~~~y----------PGr~S~  316 (501)
T 3hl2_A          251 VNNAYGVQSSKC-MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEI---SKMY----------PGRASA  316 (501)
T ss_dssp             EECTTCTTCHHH-HHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HHTS----------CSCBCS
T ss_pred             EeCcchhhhhhh-hhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHH---HHhC----------CCCCCC
Confidence            999999866422 11111122233499999999999999999888888876544221   1222          367778


Q ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          323 SQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       323 ~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ..++.+|++++.+|.+||++++++++++++||+
T Consensus       317 Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~  349 (501)
T 3hl2_A          317 SPSLDVLITLLSLGSNGYKKLLKERKEMFSYLS  349 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999885

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.94  E-value=1.4e-25  Score=212.46  Aligned_cols=253  Identities=15%  Similarity=0.071  Sum_probs=188.2

Q ss_pred             CCCChHHHHHHHHHHhcccCCCccc----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDE----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      ++++++.+.+++.+.+.....++..    ......+.+++++++++++|+++     ..+++|+||++|+..++.++...
T Consensus         9 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~i~~~~g~~~a~~~~~~~~~~~   83 (382)
T 4hvk_A            9 AKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-----GTVVFTSGATEANNLAIIGYAMR   83 (382)
T ss_dssp             CCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTT-----EEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCc-----CeEEEECCchHHHHHHHHHhhhh
Confidence            3455678888888877543332222    23556788899999999999975     34899999999999999988632


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHHHh---hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (356)
                      +.+         .+++|+++.++|+++...+..   .|++++.+|++++ +.+|+++|++++++++++|++++++||||.
T Consensus        84 ~~~---------~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~  153 (382)
T 4hvk_A           84 NAR---------KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY-GEVDVSFIDQKLRDDTILVSVQHANNEIGT  153 (382)
T ss_dssp             HGG---------GCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTT-SCBCHHHHHHHCCTTEEEEECCSBCTTTCB
T ss_pred             hcC---------CCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCC-CCcCHHHHHHHhccCceEEEEECCCCCcee
Confidence            100         157999999999998877665   4999999999864 899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCc
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~  297 (356)
                      +.|+++|.++|+++      ++ +|+|++++.+..+       .++...++|.++.++||+ ++|.|+|+++++++..+.
T Consensus       154 ~~~~~~i~~l~~~~------~~-li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~  218 (382)
T 4hvk_A          154 IQPVEEISEVLAGK------AA-LHIDATASVGQIE-------VDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQ  218 (382)
T ss_dssp             BCCHHHHHHHHSSS------SE-EEEECTTTBTTBC-------CCHHHHTCSEEEEESGGG-TSCTTCEEEEEETTCCCC
T ss_pred             eCCHHHHHHHHHHc------CE-EEEEhHHhcCCCC-------CCchhcCCCEEEEeHHHh-cCCCceEEEEEcCccCcC
Confidence            99999999999999      99 9999998764432       222223689999999997 578899999998754221


Q ss_pred             cccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                            ..+.++........++.+....+++.+++..+ .++++++.++..+++++|
T Consensus       219 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l  268 (382)
T 4hvk_A          219 ------PVILGGGQENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRI  268 (382)
T ss_dssp             ------CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             ------cccccCCCcCccccCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence                  11112211111123565666566666666643 467888888877777665

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.94  E-value=1.5e-25  Score=212.91  Aligned_cols=253  Identities=15%  Similarity=0.067  Sum_probs=184.6

Q ss_pred             CCCChHHHHHHHHHHhcccCCCc----ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDM----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      ++++++.+.+++.+.+.....++    ..++.......++++++++++|+++     ..+++|+||++|+..++.++...
T Consensus         9 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~l~~~   83 (382)
T 4eb5_A            9 AKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-----GTVVFTSGATEANNLAIIGYAMR   83 (382)
T ss_dssp             CCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTT-----EEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEcCchHHHHHHHHHHHHhh
Confidence            34566888898887775422222    1223456778889999999999875     24899999999999999988732


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHHHh---hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (356)
                      +..         .+++|+++.++|+++...+..   .|++++.+|++++ +.+|+++|++++++++++|++++++||||.
T Consensus        84 ~~~---------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~  153 (382)
T 4eb5_A           84 NAR---------KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY-GEVDVSFIDQKLRDDTILVSVQHANNEIGT  153 (382)
T ss_dssp             HGG---------GCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTT-SCBCHHHHHHHCCTTEEEEECCSBCTTTCB
T ss_pred             ccC---------CCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCC-CccCHHHHHHHhcCCCeEEEEeccCCCccc
Confidence            100         147899999999998777764   5999999999864 899999999999888999999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCc
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~  297 (356)
                      +.|+++|.++|+++      +++ |+|++|+.+..+       .++...++|.++.|+||+ ++|.|+|+++++++..+.
T Consensus       154 ~~~l~~i~~l~~~~------~~~-i~D~a~~~g~~~-------~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~  218 (382)
T 4eb5_A          154 IQPVEEISEVLAGK------AAL-HIDATASVGQIE-------VDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQ  218 (382)
T ss_dssp             BCCHHHHHHHHTTS------SEE-EEECTTTBTTBC-------CCHHHHTCSEEEEETGGG-TCCSSCEEEEEETTCCCC
T ss_pred             cCCHHHHHHHHHHC------CCE-EEEcchhcCCcc-------cCccccCCCEEEeehHHh-cCCCceEEEEEccccccC
Confidence            99999999999999      999 999999853321       222212579999999998 578899999998653121


Q ss_pred             cccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      .      .+.++........++.+....+++..+++.+. ++++++.++..+++++|
T Consensus       219 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l  268 (382)
T 4eb5_A          219 P------VILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRI  268 (382)
T ss_dssp             C------SSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             c------eecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence            1      11111110111235555555666667776553 46777777777766655

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.94  E-value=9.8e-26  Score=216.71  Aligned_cols=231  Identities=15%  Similarity=0.087  Sum_probs=178.4

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCe-EEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch--H
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVG-VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--W  167 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~-~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s--~  167 (356)
                      +...++.+++++++++++|.+.     ... ++++||++++..++.++..+             +++|+++.++|++  +
T Consensus        40 ~~~~~~~~~l~~~la~~~g~~~-----~~~~~~~~s~t~al~~~~~~l~~~-------------gd~Vl~~~~~~~~~~~  101 (416)
T 3isl_A           40 PAFTGIMNETMEMLRELFQTKN-----RWAYPIDGTSRAGIEAVLASVIEP-------------EDDVLIPIYGRFGYLL  101 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC-----SEEEEEESCHHHHHHHHHHHHCCT-------------TCEEEEEESSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC-----CcEEEecCcHHHHHHHHHHHhcCC-------------CCEEEEecCCcccHHH
Confidence            3456778899999999999875     224 48889999999998877432             5799999999998  7


Q ss_pred             HHHHHhhCCeeEEEEecCCccccCHHHHHHHHh-hCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecc
Q 018437          168 EKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (356)
Q Consensus       168 ~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a  246 (356)
                      ...++..|++++.+|++++ +.+|+++|+++++ +++++|++++++||||.+.|+++|.++|+++      |+++|+|++
T Consensus       102 ~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~a  174 (416)
T 3isl_A          102 TEIAERYGANVHMLECEWG-TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTE------DALFIVDAV  174 (416)
T ss_dssp             HHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHT------TCEEEEECT
T ss_pred             HHHHHhcCCeeEEEecCCC-CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHc------CCEEEEECC
Confidence            7888999999999999875 8999999999998 5899999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccc----cCCC---------CCC---
Q 018437          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH----INYL---------GSD---  310 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~----~~~~---------~~~---  310 (356)
                      ++.+..+       .++...++|.++.++|||+++|.|+|+++++++ .. +.+...    ..|.         ++.   
T Consensus       175 ~~~~~~~-------~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~-~~-~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~  245 (416)
T 3isl_A          175 ATIGGCE-------VKVDEWKIDAAIGGTQKCLSVPSGMAPITYNER-VA-DVIAARKKVERGIATQADRAALSGNRPIT  245 (416)
T ss_dssp             TTTTTSC-------CCTTTTTCSEEECCSSSTTCCCSSEEEEEECHH-HH-HHHHTC------------------CCCCS
T ss_pred             ccccCCC-------cchhhcCCCEEEecCccccCCCCCeEEEEECHH-HH-HHhhccccccccccccccchhccCCCCCC
Confidence            8754442       233334789999999999999999999998653 11 111000    0010         000   


Q ss_pred             -------------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          311 -------------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       311 -------------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                                   .......+|.+....+++.+++..+...|++++.++..+++++|.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~  303 (416)
T 3isl_A          246 SNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALA  303 (416)
T ss_dssp             CSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                         001112367777778888888988887788888888888777653

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.94  E-value=8.6e-25  Score=210.86  Aligned_cols=261  Identities=18%  Similarity=0.104  Sum_probs=189.6

Q ss_pred             cccccCCCChHHHHHHHHHHhc--ccCCCccc-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASIN--KNYVDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~--~~~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (356)
                      |....++++++.+.+++.+.+.  ....++..     .........++++++++++|+++     ..+++|+||++|+..
T Consensus        26 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~ggt~a~~~  100 (423)
T 3lvm_A           26 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP-----REIVFTSGATESDNL  100 (423)
T ss_dssp             CBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESSHHHHHHH
T ss_pred             ecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCC-----CeEEEeCChHHHHHH
Confidence            3333445667888999887776  33333222     22445677889999999999975     348999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhh---CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEe
Q 018437          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~---G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      ++.++.+.+.         ..+++|+++.++|+++...+..+   |++++.+|+++ ++.+|+++|++++++++++|+++
T Consensus       101 a~~~l~~~~~---------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~  170 (423)
T 3lvm_A          101 AIKGAANFYQ---------KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-NGIIDLKELEAAMRDDTILVSIM  170 (423)
T ss_dssp             HHHHHHHHHT---------TTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHCCTTEEEEECC
T ss_pred             HHHHHHHhhc---------cCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC-CCccCHHHHHHhcCCCcEEEEEe
Confidence            9998875321         11579999999999988887555   99999999987 48999999999999999999999


Q ss_pred             cCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEE
Q 018437          210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (356)
Q Consensus       210 ~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~  289 (356)
                      +++||||.+.|+++|.++|+++      |+++|+|++++.+..+       .++...++|.++.++||+ ++|.|+|+++
T Consensus       171 ~~~nptG~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~-------~~~~~~~~di~~~s~sK~-~g~~g~G~~~  236 (423)
T 3lvm_A          171 HVNNEIGVVQDIAAIGEMCRAR------GIIYHVDATQSVGKLP-------IDLSQLKVDLMSFSGHKI-YGPKGIGALY  236 (423)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHH------TCEEEEECTTTTTTSC-------CCTTTSCCSEEEEESTTT-TSCSSCEEEE
T ss_pred             CCCCCCccccCHHHHHHHHHHc------CCEEEEEhhhhcCCCC-------cChhhcCCCEEEechHHh-cCCCCeEEEE
Confidence            9999999999999999999999      9999999999875442       223334689999999995 5788899999


Q ss_pred             EeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ++++..  ..+  ...+.++........++.+....+++.+++..+... ++++.++..+++++|
T Consensus       237 ~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l  296 (423)
T 3lvm_A          237 VRRKPR--VRI--EAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRL  296 (423)
T ss_dssp             ECBTTB--CCC--CCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             Eecccc--CCC--CccccCCcccccccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            875422  111  111111111111123566666666666777665433 666666666665554

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.93  E-value=2.3e-25  Score=213.12  Aligned_cols=259  Identities=18%  Similarity=0.104  Sum_probs=184.6

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcc----cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMD----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      ++++++.+.+++.+.+.....++.    .......+.+++++++++++|+++     ..+++|+||++|+..++.++...
T Consensus        29 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~g~t~al~~~~~~l~~~  103 (400)
T 3vax_A           29 TTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEP-----DELIFTSGATESNNIALLGLAPY  103 (400)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCG-----GGEEEESCHHHHHHHHHHTTHHH
T ss_pred             CCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCC-----CcEEEeCCHHHHHHHHHHHHHHh
Confidence            345567888888777653222221    122445677889999999999975     34899999999999999988622


Q ss_pred             HHHHHHhcCCCCCCC-eEEecCCCcchHHHHHHh---hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          141 WQQKRKEQGKPYDKP-NIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~-~vi~s~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      ..+    +     ++ +|+++.++|+++...+..   .|++++.+|++++ +.+|+++|++++++++++|++++++||||
T Consensus       104 ~~~----~-----gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG  173 (400)
T 3vax_A          104 GER----T-----GRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPS-GRISVEGVMERLRPDTLLVSLMHVNNETG  173 (400)
T ss_dssp             HHH----H-----TCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTT-CCCCHHHHHTTCCTTEEEEECCSBCTTTC
T ss_pred             hcc----C-----CCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCC-CCcCHHHHHHhcCCCceEEEEECCCCCce
Confidence            111    1     57 899999999998776665   4999999999874 89999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEE-EeCCCC
Q 018437          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV-WRTKDD  295 (356)
Q Consensus       217 ~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~-~~~~~~  295 (356)
                      .+.|+++|.++|+++      |+++++|++|+.+..+       .++... +|.++.++||+ ++|.|+|+++ ++++..
T Consensus       174 ~~~~l~~i~~la~~~------~~~li~D~a~~~~~~~-------~~~~~~-~d~~~~s~~K~-~g~~g~g~~~~~~~~~~  238 (400)
T 3vax_A          174 VIQPVAELAQQLRAT------PTYLHVDAAQGYGKVP-------GDLTTP-IDMISISGHKI-GAPKGVGALVTRRREEM  238 (400)
T ss_dssp             BBCCHHHHHHHHTTS------SCEEEEECTTTTTTSG-------GGGGSC-CSEEEEETGGG-TSCSSCEEEEECBCSSS
T ss_pred             eeCcHHHHHHHHHhc------CCEEEEEhhhhcCCCC-------cChhhc-CcEEEEeHHHh-CCCCceEEEEEecchhc
Confidence            999999999999999      9999999999864432       333333 89999999994 5788999999 887433


Q ss_pred             CccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ..........+.++........++.+....+++..+++.+ .++++++.++..+++++|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l  296 (400)
T 3vax_A          239 DDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLRSRL  296 (400)
T ss_dssp             TTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHHHHH
T ss_pred             cccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence            2100001111111111111123555665566666666654 345677777776666654

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.93  E-value=2.5e-24  Score=204.39  Aligned_cols=254  Identities=17%  Similarity=0.099  Sum_probs=182.0

Q ss_pred             CCCChHHHHHHHHHHhcccCCCccc----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDE----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      .+++++.+.+++.+.+.....++..    .........++++++++++|+++     ..+++|+||++|+..++.+++..
T Consensus        10 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~   84 (384)
T 1eg5_A           10 TTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSP-----SEIFFTSCATESINWILKTVAET   84 (384)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCG-----GGEEEESCHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCC-----CeEEEECCHHHHHHHHHHhhhhh
Confidence            3456688899888877643222211    12345666788999999999875     24899999999999999988631


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHH---HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (356)
                      .         ...+++|+++.++|+++...+   +..|++++.+|++++ +.+|+++|++++++++++|++++++||||.
T Consensus        85 ~---------~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~  154 (384)
T 1eg5_A           85 F---------EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR-GVVKLEELEKLVDEDTFLVSIMAANNEVGT  154 (384)
T ss_dssp             T---------TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT-SCBCHHHHHHHCCTTEEEEEEESBCTTTCB
T ss_pred             c---------cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCC-CccCHHHHHHHhCCCCeEEEEECCCCCccc
Confidence            0         001578999999999887666   667999999999864 899999999999988999999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCC--CcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCC
Q 018437          218 FEDVKLLHDLLTKKNEETGWD--TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~--~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~  295 (356)
                      +.|+++|.++|+++      +  +++|+|++|+.+..       ..++...++|.++.|+||+ ++|.|+|+++++++..
T Consensus       155 ~~~~~~i~~l~~~~------~~~~~li~Dea~~~~~~-------~~~~~~~~~di~~~s~sK~-~g~~G~G~~~~~~~~~  220 (384)
T 1eg5_A          155 IQPVEDVTRIVKKK------NKETLVHVDAVQTIGKI-------PFSLEKLEVDYASFSAHKF-HGPKGVGITYIRKGVP  220 (384)
T ss_dssp             BCCHHHHHHHHHHH------CTTCEEEEECTTTTTTS-------CCCCTTTCCSEEEEEGGGG-TSCTTCEEEEECTTSC
T ss_pred             ccCHHHHHHHHHhc------CCceEEEEEhhhhcCCc-------ccCchhcCCCEEEecHHHh-cCCCceEEEEEcCCCc
Confidence            99999999999999      9  99999999873322       1223323689999999998 5788899999875421


Q ss_pred             CccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +...      +.+.........++.+....++++.+++.+ .++++++.++..+++++|
T Consensus       221 ~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l  272 (384)
T 1eg5_A          221 IRPL------IHGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKL  272 (384)
T ss_dssp             CCCS------BCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHH
T ss_pred             cccc------cccCcccccccCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Confidence            1111      111111011123455565566666777664 345666666666666554

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.93  E-value=3.5e-25  Score=211.31  Aligned_cols=254  Identities=11%  Similarity=-0.012  Sum_probs=185.3

Q ss_pred             cccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           62 SFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        62 ~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      ...+.++++.+.+++.+.+..   +  .++.......++++++++++|.++     ..+++|+||++|+..++.++..+ 
T Consensus        14 ~~~~~~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~t~g~t~a~~~~~~~~~~~-   82 (392)
T 2z9v_A           14 TAGPVNAYPEVLRGLGRTVLY---D--YDPAFQLLYEKVVDKAQKAMRLSN-----KPVILHGEPVLGLEAAAASLISP-   82 (392)
T ss_dssp             SSSCCCCCHHHHHHTTSCCCC---T--TSHHHHHHHHHHHHHHHHHTTCSS-----CCEEESSCTHHHHHHHHHHHCCT-
T ss_pred             cCCCcCCCHHHHHHHhccccc---c--ccHHHHHHHHHHHHHHHHHhCCCC-----CEEEEeCCchHHHHHHHHHhcCC-
Confidence            334556667888887766542   1  233445667788999999999974     24899999999999999887432 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchH--HHHHHhhCCeeEEEEecCCccccCHHHHHHHHh--hCceEEEEecCCCcccc
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAILGSTLTGE  217 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~~~~v~~~~~~~~tG~  217 (356)
                                  +++|+++.++|+++  ...++..|++++.+|++++ +.+|+++|+++++  +++++|++++++||||.
T Consensus        83 ------------gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~  149 (392)
T 2z9v_A           83 ------------DDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN-EAIDPQAVADMLKAHPEITVVSVCHHDTPSGT  149 (392)
T ss_dssp             ------------TCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTE
T ss_pred             ------------CCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC-CCCCHHHHHHHHhcCCCCcEEEEeccCCCCce
Confidence                        46899999999875  3445567999999999875 7899999999995  47899999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCc
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~  297 (356)
                      +.|+++|.++|+++      |+++|+|++|+.+..+       .++...++|.++.|+||++++|.|+|+++++++ .. 
T Consensus       150 ~~~l~~i~~l~~~~------~~~li~D~a~~~g~~~-------~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~-~~-  214 (392)
T 2z9v_A          150 INPIDAIGALVSAH------GAYLIVDAVSSFGGMK-------THPEDCKADIYVTGPNKCLGAPPGLTMMGVSER-AW-  214 (392)
T ss_dssp             ECCHHHHHHHHHHT------TCEEEEECTTTBTTBS-------CCGGGGTCSEEEECSSSTTCCCSCCEEEEECHH-HH-
T ss_pred             eccHHHHHHHHHHc------CCeEEEEcccccCCcc-------cccccccceEEEecCcccccCCCceeEEEECHH-HH-
Confidence            99999999999999      9999999999854332       222223689999999999999999999998643 21 


Q ss_pred             ccccc-c--c--CCCC------CCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          298 DELVF-H--I--NYLG------SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       298 ~~~~~-~--~--~~~~------~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +.+.. .  .  .+.+      +........++.+....+++..+++.+...|++++.++..+++++|
T Consensus       215 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l  282 (392)
T 2z9v_A          215 AKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAM  282 (392)
T ss_dssp             HHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            11110 0  0  0110      0001112246666666677778888776666777777777766654

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.93  E-value=4.3e-25  Score=210.78  Aligned_cols=252  Identities=12%  Similarity=0.026  Sum_probs=183.6

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      +.++++.+.+++.+.+..+   +  .+.......++++++++++|++.+    ..+++|+||++|+..++.++.++    
T Consensus        27 ~~~~~~~v~~a~~~~~~~~---~--~~~~~~~~~~l~~~la~~~g~~~~----~~i~~~~g~t~a~~~~~~~~~~~----   93 (393)
T 2huf_A           27 PSNAPQRVLDAMSRPILGH---L--HPETLKIMDDIKEGVRYLFQTNNI----ATFCLSASGHGGMEATLCNLLED----   93 (393)
T ss_dssp             CCCCCHHHHHHTTSCCCCT---T--SHHHHHHHHHHHHHHHHHHTCCCS----EEEEESSCHHHHHHHHHHHHCCT----
T ss_pred             CCCCCHHHHHHHHhhhccC---C--CHHHHHHHHHHHHHHHHHhCCCCC----cEEEEcCcHHHHHHHHHHHHhCC----
Confidence            3445677888776655421   2  234456777899999999999752    14789999999999999887432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchH--HHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCH
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV  221 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i  221 (356)
                               +++|+++.++|+++  ...++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||||.+.|+
T Consensus        94 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l  163 (393)
T 2huf_A           94 ---------GDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG-QSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGL  163 (393)
T ss_dssp             ---------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred             ---------CCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC-CCCCHHHHHHHHhccCCcEEEEEccCCCccccCCH
Confidence                     46899999999884  3445667999999999874 79999999999988 89999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccc
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV  301 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~  301 (356)
                      ++|.++|+++      ++++|+|++++.+..+       .++...++|.++.++||++++|.|+|+++++++ .. +.+.
T Consensus       164 ~~i~~~~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~-~~-~~~~  228 (393)
T 2huf_A          164 EGVGALCHQH------NCLLIVDTVASLGGAP-------MFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHR-AV-ERYK  228 (393)
T ss_dssp             TTHHHHHHHT------TCEEEEECTTTBTTBC-------CCTTTTTCSEEECCSSSTTCCCSSCEEEEECHH-HH-HHHH
T ss_pred             HHHHHHHHHc------CCEEEEEcccccCCCC-------cchhhcCccEEEECCCcccccCCCeEEEEECHH-HH-HHHh
Confidence            9999999999      9999999998754331       223333689999999999989999999998632 21 1111


Q ss_pred             cc----cCC----------CCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          302 FH----INY----------LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       302 ~~----~~~----------~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ..    .+|          .++........++.+....+++.++++.+..+|++++.++..+++++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  295 (393)
T 2huf_A          229 RRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRL  295 (393)
T ss_dssp             TCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             hcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            00    111          111111111235666766777777888776666777777776666654

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.93  E-value=9.4e-25  Score=207.62  Aligned_cols=253  Identities=11%  Similarity=-0.023  Sum_probs=185.9

Q ss_pred             cCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      .+.+.++.+.+++.+.+..   ++  ++....+.+++++++++++|++. .   ..+++|+||++|+..++.++.++   
T Consensus        27 ~~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~-~---~~v~~~~g~t~a~~~~~~~l~~~---   94 (386)
T 2dr1_A           27 GPVACFPEVLEIMKVQMFS---HR--SKEYRKVHMDTVERLREFLEVEK-G---EVLLVPSSGTGIMEASIRNGVSK---   94 (386)
T ss_dssp             SSCCCCHHHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCSS-S---EEEEESSCHHHHHHHHHHHHSCT---
T ss_pred             CCcCCcHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCC-C---cEEEEeCChHHHHHHHHHHhhcC---
Confidence            3445567777777655432   22  23457888899999999999971 1   34789999999999999887432   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh--hCceEEEEecCCCcccccC
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAILGSTLTGEFE  219 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~~~~v~~~~~~~~tG~~~  219 (356)
                                +++|+++.++|++  +...++..|++++.+|++++ +.+|+++|+++++  +++++|++++++||||.+.
T Consensus        95 ----------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~  163 (386)
T 2dr1_A           95 ----------GGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG-KAVKPEDLDDALRKNPDVEAVTITYNETSTGVLN  163 (386)
T ss_dssp             ----------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC
T ss_pred             ----------CCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCC-CCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhC
Confidence                      5789999999998  88889999999999999874 8999999999994  5789999999999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccc
Q 018437          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (356)
Q Consensus       220 ~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~  299 (356)
                      |+++|.++|+++      |+++|+|++|+.+..+       .++...++|.++.|+||++++|.|+|+++++++ .. +.
T Consensus       164 ~l~~i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~-~~-~~  228 (386)
T 2dr1_A          164 PLPELAKVAKEH------DKLVFVDAVSAMGGAD-------IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSER-FL-EI  228 (386)
T ss_dssp             CHHHHHHHHHHT------TCEEEEECTTTBTTBC-------CCTTTTTCSEEEEETTSTTCCCSSCEEEEECHH-HH-HH
T ss_pred             CHHHHHHHHHHc------CCeEEEEccccccCcc-------ccccccCCcEEEEeccccccCCCceEEEEECHH-HH-HH
Confidence            999999999999      9999999999876542       222233689999999999988888999998653 21 11


Q ss_pred             ccc--ccCCCCC------CCC-CccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCcc
Q 018437          300 LVF--HINYLGS------DQP-TFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFL  354 (356)
Q Consensus       300 ~~~--~~~~~~~------~~~-~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l  354 (356)
                      +..  ...|...      ... .....++.+....+++..+++.+... |++++.++..+++++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l  293 (386)
T 2dr1_A          229 AEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMV  293 (386)
T ss_dssp             HTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            100  0001000      000 00112456665667777888876555 5777777776666654

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.93  E-value=7.5e-25  Score=209.27  Aligned_cols=253  Identities=11%  Similarity=0.005  Sum_probs=189.1

Q ss_pred             cCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      .+.++++.+.+++.+.+..   ++  .+....+.+++++++++++|++++    ..+++|+||++|+..++.++.++   
T Consensus        41 ~~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~----~~v~~t~g~t~al~~~~~~~~~~---  108 (393)
T 1vjo_A           41 GPSNAHPSVLQAMNVSPVG---HL--DPAFLALMDEIQSLLRYVWQTENP----LTIAVSGTGTAAMEATIANAVEP---  108 (393)
T ss_dssp             SCCCCCHHHHHHHSSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCCT---
T ss_pred             CCCCCCHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCchHHHHHHHHHhccCC---
Confidence            3445567888888766542   22  223567888999999999999752    14899999999999999887432   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCC
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED  220 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~  220 (356)
                                +++|+++.++|++  +...++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||||.+.|
T Consensus       109 ----------gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~  177 (393)
T 1vjo_A          109 ----------GDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG-EVFSLEELRTALETHRPAILALVHAETSTGARQP  177 (393)
T ss_dssp             ----------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred             ----------CCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCC-CCCCHHHHHHHHhhCCceEEEEeccCCCcceecc
Confidence                      5689999999999  99999999999999999874 89999999999998 8999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccc
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL  300 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~  300 (356)
                      +++|.++|+++      |+++|+|++|+.+..       +.++...++|.++.++||++++|.++|+++++++ .. +.+
T Consensus       178 l~~i~~l~~~~------~~~li~Dea~~~g~~-------~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~-~~-~~~  242 (393)
T 1vjo_A          178 LEGVGELCREF------GTLLLVDTVTSLGGV-------PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR-AI-EKL  242 (393)
T ss_dssp             CTTHHHHHHHH------TCEEEEECTTTTTTS-------CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHH-HH-HHH
T ss_pred             HHHHHHHHHHc------CCEEEEECCccccCc-------CCcccccCccEEEEcCcccccCCCceEEEEECHH-HH-HHH
Confidence            99999999999      999999999984322       1233334789999999999999999999998653 21 111


Q ss_pred             ccc----cCCCCCC-------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          301 VFH----INYLGSD-------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       301 ~~~----~~~~~~~-------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ...    ..+..+.       .......++.+....+++..+++.+..++++++.++..+++++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  307 (393)
T 1vjo_A          243 QRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYL  307 (393)
T ss_dssp             HTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            000    0111100       00001113666666777788888776666777777777766655

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.93  E-value=4.3e-26  Score=213.95  Aligned_cols=251  Identities=12%  Similarity=0.062  Sum_probs=184.2

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      +.++++.+.+++.+.+..   +  .++.......++++++++++|.+.+   ...+++|+||++|+..++.++.      
T Consensus         8 p~~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~l~~~la~~~g~~~~---~~~v~~t~g~t~a~~~~~~~~~------   73 (353)
T 2yrr_A            8 PTPIPERVQKALLRPMRG---H--LDPEVLRVNRAIQERLAALFDPGEG---ALVAALAGSGSLGMEAGLANLD------   73 (353)
T ss_dssp             SCCCCHHHHGGGGSCCCC---T--TCHHHHHHHHHHHHHHHHHHCCCTT---CEEEEESSCHHHHHHHHHHTCS------
T ss_pred             CCCCCHHHHHHHhccccc---c--cCHHHHHHHHHHHHHHHHHhCCCCC---CceEEEcCCcHHHHHHHHHHhc------
Confidence            445567888887766543   1  2445567788999999999999621   1348899999999999887652      


Q ss_pred             HHhcCCCCCCCeEEecCCCcchH--HHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCH
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV  221 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i  221 (356)
                               +++|+++.++|+++  ...++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||||.+.|+
T Consensus        74 ---------~d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~  143 (353)
T 2yrr_A           74 ---------RGPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPG-EPVDPEAVARALKRRRYRMVALVHGETSTGVLNPA  143 (353)
T ss_dssp             ---------CCCEEEEECSHHHHHHHHHHHHTTCCEEEEECCTT-SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCH
T ss_pred             ---------CCcEEEEcCCCchHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCH
Confidence                     15799999999884  5666788999999999874 89999999999998 89999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccc
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV  301 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~  301 (356)
                      ++|.++|+++      |+++|+|++|+.+..+       .++...++|.+++++|||+++|.|+|+++++++ .. +.+.
T Consensus       144 ~~i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~-~~l~  208 (353)
T 2yrr_A          144 EAIGALAKEA------GALFFLDAVTTLGMLP-------FSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLE-AR-KAFT  208 (353)
T ss_dssp             HHHHHHHHHH------TCEEEEECTTTTTTSC-------CCHHHHTCSEEECCTTSTTCCCSSCEEEEECHH-HH-HHCC
T ss_pred             HHHHHHHHHc------CCeEEEEcCccccccc-------ccccccCceEEEecCcccccCCCceEEEEECHH-HH-HHhc
Confidence            9999999999      9999999999743321       222222579999999999999999999998653 21 1111


Q ss_pred             cccCC-CC-----CCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          302 FHINY-LG-----SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       302 ~~~~~-~~-----~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ....+ ..     .........++.+....+++.++++.+...|++++.++..+++++|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  267 (353)
T 2yrr_A          209 GKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWV  267 (353)
T ss_dssp             CCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            00101 00     0000011235666666677778888877777877777777776665

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.93  E-value=5.8e-25  Score=209.41  Aligned_cols=253  Identities=11%  Similarity=0.037  Sum_probs=186.8

Q ss_pred             cCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      .|..+++.+.+++.+...   .+  .++.......++++++++++|.+..    ..+++|+||++|+..++.++.++   
T Consensus        30 ~p~~~~~~v~~a~~~~~~---~~--~~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~gg~~al~~~~~~~~~~---   97 (393)
T 3kgw_A           30 GPSNLAPRVLAAGSLRMI---GH--MQKEMLQIMEEIKQGIQYVFQTRNP----LTLVVSGSGHCAMETALFNLLEP---   97 (393)
T ss_dssp             SCCCCCHHHHHHTTCCCC---CT--TSHHHHHHHHHHHHHHHHHHTCCCS----EEEEESCCTTTHHHHHHHHHCCT---
T ss_pred             CCCCCCHHHHHHhccccc---Cc--ccHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCCcHHHHHHHHHhcCCC---
Confidence            344456777777654321   11  2344567778899999999999741    24789999999999999887432   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCC
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED  220 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~  220 (356)
                                +++|+++.++|++  +...++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||||.+.|
T Consensus        98 ----------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~  166 (393)
T 3kgw_A           98 ----------GDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPG-EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP  166 (393)
T ss_dssp             ----------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred             ----------CCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc
Confidence                      5789998888863  47788888999999999875 79999999999998 8999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccc
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL  300 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~  300 (356)
                      +++|.++|+++      |+++|+|++++.+..+       .++...++|.++.++||++++|.|+|+++++++ .. +.+
T Consensus       167 l~~i~~l~~~~------~~~li~De~~~~g~~~-------~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~-~~-~~~  231 (393)
T 3kgw_A          167 LDGFGELCHRY------QCLLLVDSVASLGGVP-------IYMDQQGIDIMYSSSQKVLNAPPGISLISFNDK-AK-YKV  231 (393)
T ss_dssp             CTTHHHHHHHT------TCEEEEECTTTTTTSC-------CCTTTTTCCEEEEESSSTTCCCSSCEEEEECHH-HH-HHH
T ss_pred             HHHHHHHHHHc------CCEEEEECCccccCcc-------cchhhcCCCEEEecCcccccCCCceeEEEECHH-HH-HHH
Confidence            99999999999      9999999998744332       223334689999999999999999999998643 11 111


Q ss_pred             cc-cc-------------CCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          301 VF-HI-------------NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       301 ~~-~~-------------~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      .. ..             .+.++........++.+....+++.+++..+..+|++++.++..+++++|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  299 (393)
T 3kgw_A          232 YSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHL  299 (393)
T ss_dssp             HTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            00 00             01111111112235666776778888888887778888888877777665

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.93  E-value=3.9e-25  Score=209.98  Aligned_cols=252  Identities=16%  Similarity=0.040  Sum_probs=187.6

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      +.++++.+.+++.+.+..+     .++....+.+++++++++++|++.+.   ..+++|+||++|+. ++.++..+    
T Consensus        10 p~~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~---~~v~~~~g~t~al~-~~~~~~~~----   76 (384)
T 3zrp_A           10 PTTIKEDVLVAGLENNVGF-----TSKEFVEALAYSLKGLRYVMGASKNY---QPLIIPGGGTSAME-SVTSLLKP----   76 (384)
T ss_dssp             CSCCCHHHHHHTTCCSCCT-----TSHHHHHHHHHHHHHHHHHHTCCTTS---EEEEEESCHHHHHH-HGGGGCCT----
T ss_pred             CCCCCHHHHHHhhcccccc-----ccHHHHHHHHHHHHHHHHHhCCCCCC---cEEEEcCCcHHHHH-HHHhhcCC----
Confidence            4455677777776554321     23455677889999999999998521   34899999999999 88765332    


Q ss_pred             HHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCH
Q 018437          145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV  221 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i  221 (356)
                               +++|+++.++|++  +...++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||+|.+.|+
T Consensus        77 ---------gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l  146 (384)
T 3zrp_A           77 ---------NDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPG-DYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPV  146 (384)
T ss_dssp             ---------TCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTT-CCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCH
T ss_pred             ---------CCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCC-CCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcH
Confidence                     5789999999976  66777888999999999874 89999999999998 89999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccc-
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL-  300 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~-  300 (356)
                      ++|.++|+++      |+++|+|++++.+..+       .++...++|.++.++||++++|.|+|+++++++ .. +.+ 
T Consensus       147 ~~i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~  211 (384)
T 3zrp_A          147 KDVINKIRKY------VELIVVDGVSSVGAEE-------VKAEEWNVDVYLTASQKALGSAAGLGLLLLSPK-AL-SILD  211 (384)
T ss_dssp             HHHHHHHGGG------EEEEEEECTTTTTTSC-------CCTTTTTCSEEEEETTSTTCCCSSEEEEEECHH-HH-HHHH
T ss_pred             HHHHHHHHhc------CCEEEEECcccccCcc-------ccccccCCCEEEecCcccccCCCceEEEEECHH-HH-HHhc
Confidence            9999999999      9999999999865442       233334689999999999989999999998653 21 111 


Q ss_pred             cc--ccCCCCCCC------C-----CccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          301 VF--HINYLGSDQ------P-----TFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       301 ~~--~~~~~~~~~------~-----~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ..  ...|.....      .     .....|+.+....+++.+++..+...|++++.++..+++++|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  278 (384)
T 3zrp_A          212 SQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAI  278 (384)
T ss_dssp             HCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            00  001100000      0     000114667777788888888887778888888888777665

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.92  E-value=5.2e-24  Score=207.17  Aligned_cols=302  Identities=13%  Similarity=0.031  Sum_probs=198.1

Q ss_pred             ccccccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCC-CCcccccccCCC-ChHHHHHHH--HHHhcc-cCCC
Q 018437           12 EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGN-PRLNLASFVTTW-MEPECDKLV--MASINK-NYVD   86 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~~v~~~i--~~~~~~-~~~~   86 (356)
                      ++|+++|...|..-.+....+| .++++.++++++......+.. ....++.+.+.. .++.+.+++  ...+.. +++.
T Consensus        21 ~~~~~~~~~~p~~~~~~~~~lp-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~   99 (438)
T 1wyu_A           21 ASLEDLFAHLPKEILSPPIDLP-EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQ   99 (438)
T ss_dssp             SSTGGGGTTSCGGGSSCCCCCC-CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCS
T ss_pred             CCHHHHHHhCcHHHhcCCCCCC-CCCCHHHHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhcCCCCc
Confidence            4788999887775554455788 789999999988776554322 222233333322 334554444  333332 3333


Q ss_pred             cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch
Q 018437           87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC  166 (356)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s  166 (356)
                      +..+++..++++++++++++++|++.     ..+++++|+|.++..++.+++-.            .+++|+++.++|++
T Consensus       100 ~~~~~g~~~~~~~~~~~la~~~g~~~-----~~i~~~~g~taa~ea~~~a~~~~------------~gd~Viv~~~~h~s  162 (438)
T 1wyu_A          100 PEVSQGVLQATFEYQTMIAELAGLEI-----ANASMYDGATALAEGVLLALRET------------GRMGVLVSQGVHPE  162 (438)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHHHTSSE-----ECSCBSSHHHHHHHHHHHHHHHH------------TCCEEEEETTSCHH
T ss_pred             chhhhhHHHHHHHHHHHHHHHhCCCc-----cceEEeCcHHHHHHHHHHHHhcC------------CCCEEEEcCccCHh
Confidence            44577889999999999999999975     23679999994433333332211            15799999999999


Q ss_pred             HHHHH----HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEE
Q 018437          167 WEKFA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH  242 (356)
Q Consensus       167 ~~~~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~  242 (356)
                      +...+    +..|++++.||++  ++.+|+++    ++++|++|++++| |++|.+.|+++|.++|+++      |+|+|
T Consensus       163 ~~~~~~~~a~~~G~~v~~v~~~--~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~------g~~vi  229 (438)
T 1wyu_A          163 YRAVLRAYLEAVGAKLLTLPLE--GGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGA------GALFV  229 (438)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCB--TTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHT------TCEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEcCc--CCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHc------CCEEE
Confidence            87555    4579999999983  37888776    6778999999998 9999999999999999999      99999


Q ss_pred             Eecc-cccccccccCCCCcccccCCCceEEEEcCCc-----CCCCCcCeeEEEEeCCCCCccccccc-----cCCCCCCC
Q 018437          243 VDAA-SGGFIAPFLYPDLEWDFRLPLVKSINVSGHK-----YGLVYAGVGWVVWRTKDDLPDELVFH-----INYLGSDQ  311 (356)
Q Consensus       243 vD~a-~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK-----~l~~P~g~g~l~~~~~~~~~~~~~~~-----~~~~~~~~  311 (356)
                      +|.. ++.+..+  .   +   ...++|++++|+||     |+++| ++|+++++++ .. +.+...     ..+.+...
T Consensus       230 vd~d~~a~g~~~--~---~---~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~-~~l~~~~~g~~~~~~~~~~  298 (438)
T 1wyu_A          230 AVADPLSLGVLK--P---P---GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FV-RQLPGRLVSETVDVEGRRG  298 (438)
T ss_dssp             EECCTTGGGTBC--C---H---HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GG-GGCCSCCEEEEEBTTSCEE
T ss_pred             EEechhhccCcC--C---C---ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHH-HH-HhCCCceeccccccCCCcc
Confidence            7644 3211111  0   1   12368999999888     66778 9999998753 22 221100     00000000


Q ss_pred             --------CC--ccccCCCCh---hHHHHH--HHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          312 --------PT--FTLNFSKGS---SQIIAQ--YYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       312 --------~~--~~~~~tr~~---~~~~~~--~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                              ..  ....++.+.   ...+++  +.++..++.+|++++.++..++++||.
T Consensus       299 ~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~  357 (438)
T 1wyu_A          299 FILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLH  357 (438)
T ss_dssp             EEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence                    00  000123322   223333  445888999999999999988888764

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.92  E-value=2.7e-24  Score=206.72  Aligned_cols=265  Identities=18%  Similarity=0.122  Sum_probs=187.7

Q ss_pred             cccccccCCCChHHHHHHHHHHhcccCCCcc----cCc-chHHHHHHHHHHHHHHhCC-CCCCCCCCCeEEeCChhHHHH
Q 018437           58 LNLASFVTTWMEPECDKLVMASINKNYVDMD----EYP-VTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAIM  131 (356)
Q Consensus        58 ~~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~----~~~-~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~Ggt~a~~  131 (356)
                      .+|....+++.++.+.+++.+.+.....++.    .++ .......++++.+++++|. ++     ..+++|+||++|+.
T Consensus        30 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~g~t~a~~  104 (420)
T 1t3i_A           30 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP-----REIVYTRNATEAIN  104 (420)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCG-----GGEEEESSHHHHHH
T ss_pred             EEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCC-----CeEEEcCChHHHHH
Confidence            3455555556668888888877754221111    111 1245566788899999998 43     34899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEE
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVA  207 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~  207 (356)
                      .++.++++..         -..+++|+++.++|++    +...++..|++++.+|+++ ++.+|+++|++++++++++|+
T Consensus       105 ~~~~~~~~~~---------~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~  174 (420)
T 1t3i_A          105 LVAYSWGMNN---------LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE-QESFDLEHFKTLLSEKTKLVT  174 (420)
T ss_dssp             HHHHHTHHHH---------CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT-TSSBCHHHHHHHCCTTEEEEE
T ss_pred             HHHHHhhhcc---------cCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC-CCCcCHHHHHHhhCCCceEEE
Confidence            9999874210         0114689999999998    6777888899999999986 489999999999998999999


Q ss_pred             EecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeE
Q 018437          208 AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW  287 (356)
Q Consensus       208 ~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~  287 (356)
                      +++++||+|.+.|+++|.++|+++      |+++|+|++|+.+..+       .++...++|.++.|+|| +++|.|+|+
T Consensus       175 ~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~sK-~~~~~g~G~  240 (420)
T 1t3i_A          175 VVHISNTLGCVNPAEEIAQLAHQA------GAKVLVDACQSAPHYP-------LDVQLIDCDWLVASGHK-MCAPTGIGF  240 (420)
T ss_dssp             EESBCTTTCBBCCHHHHHHHHHHT------TCEEEEECTTTTTTSC-------CCHHHHTCSEEEEEGGG-TTSCTTCEE
T ss_pred             EeCCcccccCcCCHHHHHHHHHHc------CCEEEEEhhhccCCcc-------CchhhcCCCEEEEehhh-hcCCCceEE
Confidence            999999999999999999999999      9999999999865432       12222258999999999 557888999


Q ss_pred             EEEeCCCCCccccccccCCCCCC------------CCCccc-cCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          288 VVWRTKDDLPDELVFHINYLGSD------------QPTFTL-NFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       288 l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ++.+++ .. +.+.. ....++.            .....+ .++.+....+++..+++.+...|++++.++..++++++
T Consensus       241 ~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  317 (420)
T 1t3i_A          241 LYGKEE-IL-EAMPP-FFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYL  317 (420)
T ss_dssp             EEECHH-HH-HHSCC-CSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             EEEchH-HH-hhcCc-eecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            988642 21 11110 0000000            000011 25666666677776788776667777777777666654

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.92  E-value=4.2e-24  Score=204.15  Aligned_cols=251  Identities=10%  Similarity=0.071  Sum_probs=182.0

Q ss_pred             CCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           66 TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        66 ~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      .++++.+.+++.+.+..   ++  ++.......++++.+++++|.+++    ..+++|+||++++..++.++.++     
T Consensus        27 ~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~g~t~al~~~~~~~~~~-----   92 (396)
T 2ch1_A           27 SNCSKRVLTAMTNTVLS---NF--HAELFRTMDEVKDGLRYIFQTENR----ATMCVSGSAHAGMEAMLSNLLEE-----   92 (396)
T ss_dssp             CCCCHHHHHHTTSCCCC---TT--CHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCCT-----
T ss_pred             CCCCHHHHHHhcccccc---CC--ChhHHHHHHHHHHHHHHHhCCCCC----cEEEECCcHHHHHHHHHHHhcCC-----
Confidence            34456777776554432   12  233345567888999999999752    14789999999999999887432     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHH--HHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHH
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK  222 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~  222 (356)
                              +++|+++.++|+++.  ..++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||||.+.|++
T Consensus        93 --------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~  163 (396)
T 2ch1_A           93 --------GDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPD-RPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLE  163 (396)
T ss_dssp             --------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred             --------CCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCC-CCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHH
Confidence                    578999999999984  477888999999999864 89999999999988 899999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccccc
Q 018437          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF  302 (356)
Q Consensus       223 ~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~  302 (356)
                      +|.++|+++      ++++|+|++|+.+..+       .++...++|.++.++||++++|.|+|+++++++ .. ..+..
T Consensus       164 ~i~~l~~~~------~~~li~Dea~~~g~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~~  228 (396)
T 2ch1_A          164 GVGQICHQH------DCLLIVDAVASLCGVP-------FYMDKWEIDAVYTGAQKVLGAPPGITPISISPK-AL-DVIRN  228 (396)
T ss_dssp             THHHHHHHT------TCEEEEECTTTBTTBC-------CCTTTTTCCEEECCCC-CCCCCSSCEEEEECHH-HH-HHHHT
T ss_pred             HHHHHHHHc------CCEEEEEccccccCCc-------cchhhcCcCEEEEcCCccccCCCCeEEEEECHH-HH-Hhhhh
Confidence            999999999      9999999999854332       233334679999999999999999999988652 21 11100


Q ss_pred             c---c-C-C---------CCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          303 H---I-N-Y---------LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       303 ~---~-~-~---------~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      .   . . +         ...........++.+....+++.++++.+..++++++.++..+++++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  294 (396)
T 2ch1_A          229 RRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQIL  294 (396)
T ss_dssp             CSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             ccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            0   0 0 0         111000111235666665677777888776677777777777766655

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.92  E-value=2.6e-24  Score=204.89  Aligned_cols=255  Identities=13%  Similarity=-0.012  Sum_probs=183.2

Q ss_pred             CCCChHHHHHHHHHHhcccC-CCcc---cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HH
Q 018437           65 TTWMEPECDKLVMASINKNY-VDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KR  139 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~-~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~  139 (356)
                      .++.++.+.+++.+.+.... .++.   .++.......++++.+++++|+++     ..+++|+||++|+..++.++ .+
T Consensus        25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~   99 (390)
T 1elu_A           25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDP-----NTITITDNVTTGCDIVLWGLDWH   99 (390)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCG-----GGEEEESSHHHHHHHHHHHSCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCH-----HHEEEeCChHHHHHHHHhCCCCC
Confidence            33455678888877665321 1111   233333566788888999999875     24899999999999999877 22


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHH----HHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----ARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~----~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      +             +++|+++.++|.++...    ++..|++++.+|++. +++.+|+++|++++++++++|++++++||
T Consensus       100 ~-------------gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~np  166 (390)
T 1elu_A          100 Q-------------GDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWN  166 (390)
T ss_dssp             T-------------TCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTT
T ss_pred             C-------------CCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccC
Confidence            1             47899999999986643    567799999999973 24899999999999988999999999999


Q ss_pred             ccccCCHHHHHHHHH----HhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          215 TGEFEDVKLLHDLLT----KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       215 tG~~~~i~~I~~i~~----~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      ||.+.|+++|.++|+    ++      ++++|+|++|+.+..+       .++...++|.++.|+|||+++|.|+|++++
T Consensus       167 tG~~~~~~~i~~l~~~~~~~~------~~~li~Dea~~~g~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~  233 (390)
T 1elu_A          167 TGQVLPLAEIMAVCRRHQGNY------PVRVLVDGAQSAGSLP-------LDFSRLEVDYYAFTGHKWFAGPAGVGGLYI  233 (390)
T ss_dssp             TCCBCCHHHHHHHHHHCCSSS------CCEEEEECTTTBTTBC-------CCTTTSCCSEEEEESSSTTCCCTTCEEEEE
T ss_pred             CceecCHHHHHHHHhhhhhhc------CcEEEEEcccccCCcC-------CChhhcCCCEEEccccccccCCCceEEEEE
Confidence            999999999999999    89      9999999999854332       223334689999999999999999999998


Q ss_pred             eCCCCCccccccccCCCCCCC---------------CCccccCCCChhHHHHHHHHHHHhCHHH-HHHHHHHHHhccCcc
Q 018437          291 RTKDDLPDELVFHINYLGSDQ---------------PTFTLNFSKGSSQIIAQYYQFIRLGFEE-ITFTFISSLKVCPFL  354 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~tr~~~~~~~~~~~l~~lg~~G-~~~~~~~~~~~a~~l  354 (356)
                      +++ .. +.+..  ...++..               ......+|.+....+++.++++.+..+| ++++.++..+++++|
T Consensus       234 ~~~-~~-~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l  309 (390)
T 1elu_A          234 HGD-CL-GEINP--TYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFL  309 (390)
T ss_dssp             CTT-TG-GGCCC--CSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             CHH-hH-hhcCC--ccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            753 32 22111  0111100               0011135666665666777787776555 677777766666554

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.92  E-value=1.1e-23  Score=204.01  Aligned_cols=271  Identities=15%  Similarity=0.074  Sum_probs=185.6

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcc----cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMD----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      |....++++++.+.+++.+.+.....++.    .+....+...++++++++++|+++     ..+++|+||++|+..++.
T Consensus        22 Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~   96 (432)
T 3a9z_A           22 MDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKP-----QDIIFTSGGTESNNLVIH   96 (432)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESCHHHHHHHHHH
T ss_pred             eeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCc-----CeEEEeCChHHHHHHHHH
Confidence            33333445667888888877654322222    122455677899999999999975     248999999999999999


Q ss_pred             HHHHHHHHHHHhcCCC-------C-CCCeEEecCCCcchHHHHHH----hhCCeeEEEEecCCccccCHHHHHHHHhhCc
Q 018437          136 AFKRKWQQKRKEQGKP-------Y-DKPNIVTGANVQVCWEKFAR----YFEVELKEVKLEEGYYVMNPVKAVELVDENT  203 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~-------~-~~~~vi~s~~~h~s~~~~~~----~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~  203 (356)
                      ++.+.+......+|..       . ..+.|+++..+|+++.....    ..|++++.||++++++.+|+++|++++++++
T Consensus        97 ~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~  176 (432)
T 3a9z_A           97 STVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTT  176 (432)
T ss_dssp             HHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTE
T ss_pred             HHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCc
Confidence            8864321100001100       0 11478888889988755543    4689999999976348999999999999889


Q ss_pred             eEEEEecCCCcccccCCHHHHHHHHHHhhhccCCC----------CcEEEecccccccccccCCCCcccccCCCceEEEE
Q 018437          204 ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD----------TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (356)
Q Consensus       204 ~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~----------~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~  273 (356)
                      ++|++++++||||.+.|+++|.++|+++      +          +++|+|++|+.+..       ..++...++|.++.
T Consensus       177 ~~v~~~~~~nptG~~~~~~~i~~l~~~~------~~~~~~~~~~~~~livDea~~~~~~-------~~~~~~~~~d~~~~  243 (432)
T 3a9z_A          177 CLVTIMLANNETGVIMPISEISRRIKAL------NQIRAASGLPRVLVHTDAAQALGKR-------RVDVEDLGVDFLTI  243 (432)
T ss_dssp             EEEECCSBCTTTCBBCCHHHHHHHHHHH------HHHHHHHTCCCCEEEEECTTTTTTS-------CCCHHHHCCSEEEE
T ss_pred             eEEEEECcccCcccccCHHHHHHHHHhc------CcccccccCCceEEEEEchhhhCCc-------ccChhhcCCCEEEE
Confidence            9999999999999999999999999999      7          99999999976432       12222236899999


Q ss_pred             cCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCc
Q 018437          274 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPF  353 (356)
Q Consensus       274 ~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~  353 (356)
                      |+||++ +|. +|+++++++... ..  ....+.++........+|.+....+++.++++.+ .++++++.++..+++++
T Consensus       244 s~~K~~-g~~-~G~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~  317 (432)
T 3a9z_A          244 VGHKFY-GPR-IGALYVRGVGKL-TP--LYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRDY  317 (432)
T ss_dssp             EGGGTT-CCS-CEEEEETTBTTT-BC--CCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             ehhHhc-CCc-ceEEEEcccccc-CC--cCceeecCCccccccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH
Confidence            999986 576 999998754211 11  1112222211111123566665566666677655 34777777777777666


Q ss_pred             c
Q 018437          354 L  354 (356)
Q Consensus       354 l  354 (356)
                      |
T Consensus       318 l  318 (432)
T 3a9z_A          318 L  318 (432)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.92  E-value=2.5e-24  Score=206.53  Aligned_cols=263  Identities=11%  Similarity=0.001  Sum_probs=178.1

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcc-cC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMD-EY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~-~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      |....++++++.+.+++.+.+.....++. .+   ........++++++++++|+++     ..+++|+|+|+++..++.
T Consensus        30 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~al~~~~~  104 (406)
T 3cai_A           30 FDAPAGMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADP-----GGVVLGADRAVLLSLLAE  104 (406)
T ss_dssp             CBGGGCCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESCHHHHHHHHHH
T ss_pred             EeCCCcCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEeCChHHHHHHHHH
Confidence            33334446667888888877764322221 12   1245667789999999999975     348999999999988887


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHh----hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecC
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY----FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~----~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      ++...+          ..+++|+++.++|.++...+..    .|++++.+|++++++.+|+++|++++++++++|+++++
T Consensus       105 ~l~~~~----------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~  174 (406)
T 3cai_A          105 ASSSRA----------GLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSA  174 (406)
T ss_dssp             HTGGGG----------BTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESB
T ss_pred             HHhhcc----------CCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCC
Confidence            652110          0147899999999886554443    69999999998435899999999999989999999999


Q ss_pred             CCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCee-EEEE
Q 018437          212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG-WVVW  290 (356)
Q Consensus       212 ~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g-~l~~  290 (356)
                      +||||.+.|+++|.++|+++      ++++|+|++|+.+..+       .++...++|.++.|+||++ +|. +| ++++
T Consensus       175 ~nptG~~~~l~~i~~l~~~~------~~~li~D~a~~~g~~~-------~~~~~~~~d~~~~s~~K~~-g~~-~G~~~~~  239 (406)
T 3cai_A          175 SGTLGGVTDLRAMTKLVHDV------GALVVVDHSAAAPYRL-------LDIRETDADVVTVNAHAWG-GPP-IGAMVFR  239 (406)
T ss_dssp             CTTTCBBCCCHHHHHHHHHT------TCEEEEECTTTTTTCC-------CCHHHHCCSEEEEEGGGGT-SCS-CEEEEES
T ss_pred             cCCccccCCHHHHHHHHHHc------CCEEEEEcccccCCCC-------CCchhcCCCEEEeehhhhc-CCC-cCeEEEE
Confidence            99999999999999999999      9999999999854332       2222226899999999986 565 88 8877


Q ss_pred             eCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHH--------------HHHHHHHHHHhccCcc
Q 018437          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE--------------EITFTFISSLKVCPFL  354 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~--------------G~~~~~~~~~~~a~~l  354 (356)
                      +++ .. +.+.....+.++........+|.+....+++.++++.+...              +++++.++..+++++|
T Consensus       240 ~~~-~~-~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  315 (406)
T 3cai_A          240 DPS-VM-NSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYL  315 (406)
T ss_dssp             CHH-HH-HTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ehH-HH-hhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence            542 21 11111000111111001113566665555555566554221              4666666666666554

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.91  E-value=2.5e-24  Score=202.17  Aligned_cols=249  Identities=12%  Similarity=0.067  Sum_probs=178.1

Q ss_pred             cCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      .+.++++.+.+++.+.+..     ..++.......++++++++++|+++     ..+++|+||++|+..++.++.++   
T Consensus         8 ~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~-----~~i~~~~g~t~a~~~~~~~~~~~---   74 (352)
T 1iug_A            8 GPVRLHPKALEALARPQLH-----HRTEAAREVFLKARGLLREAFRTEG-----EVLILTGSGTLAMEALVKNLFAP---   74 (352)
T ss_dssp             SSCCCCHHHHHHHHSCCCC-----TTSHHHHHHHHHHHHHHHHHHTCSS-----EEEEEESCHHHHHHHHHHHHCCT---
T ss_pred             CCCCCCHHHHHHhccCCCC-----ccCHHHHHHHHHHHHHHHHHhCCCC-----ceEEEcCchHHHHHHHHHhccCC---
Confidence            3445668888888776642     1234555667789999999999974     24899999999999999887432   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHH--HHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCH
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDV  221 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i  221 (356)
                                +++|+++.++|+++.  ..++..|++++.+|++++ +.+|+++|++   +++++|++++++||||.+.|+
T Consensus        75 ----------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l  140 (352)
T 1iug_A           75 ----------GERVLVPVYGKFSERFYEIALEAGLVVERLDYPYG-DTPRPEDVAK---EGYAGLLLVHSETSTGALADL  140 (352)
T ss_dssp             ----------TCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCTTTSCC---SSCSEEEEESEETTTTEECCH
T ss_pred             ----------CCeEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHhc---cCCcEEEEEEecCCcceecCH
Confidence                      478999999999965  445567999999999864 7899998877   678899999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccc
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV  301 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~  301 (356)
                      ++|.++|++++.    |+++|+|++|+.+..+       .++...++|.++.++|||+++|.|+|+++++++ .. +.+.
T Consensus       141 ~~i~~l~~~~~~----~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~-~~~~  207 (352)
T 1iug_A          141 PALARAFKEKNP----EGLVGADMVTSLLVGE-------VALEAMGVDAAASGSQKGLMCPPGLGFVALSPR-AL-ERLK  207 (352)
T ss_dssp             HHHHHHHHHHCT----TCEEEEECTTTBTTBC-------CCSGGGTCSEEEEESSSTTCCCSCEEEEEECHH-HH-HTCC
T ss_pred             HHHHHHHHhhCC----CCEEEEECCccccCcc-------eeccccCeeEEEecCcccccCCCceeEEEECHH-HH-HHhh
Confidence            999999999843    7999999999754332       222222689999999999999999999998653 11 1100


Q ss_pred             cccCCCCC------CCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          302 FHINYLGS------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       302 ~~~~~~~~------~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      . ..|...      ........++.+....+++.++++.+... ++++.++..+++++|
T Consensus       208 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l  264 (352)
T 1iug_A          208 P-RGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALL  264 (352)
T ss_dssp             C-CSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHH
T ss_pred             C-CCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            0 000000      00001123555665566677777766544 666666666666554

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.91  E-value=3e-24  Score=210.31  Aligned_cols=233  Identities=9%  Similarity=-0.059  Sum_probs=174.7

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----H
Q 018437           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----W  167 (356)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~  167 (356)
                      ....+.+++++++++++|+++     ..+++|+|+|+++.+++.++.++          ...+++|+++.++|++    +
T Consensus       108 ~~~~~~~~l~~~la~~~g~~~-----~~v~~t~g~t~al~~~~~~~~~~----------~~~~~~Vl~~~~~~~s~~~~~  172 (465)
T 3e9k_A          108 PWITGDESIVGLMKDIVGANE-----KEIALMNALTVNLHLLMLSFFKP----------TPKRYKILLEAKAFPSDHYAI  172 (465)
T ss_dssp             CGGGTTHHHHGGGHHHHTCCG-----GGEEECSCHHHHHHHHHHHHCCC----------CSSSCEEEEETTCCHHHHHHH
T ss_pred             cHHHhHHHHHHHHHHHcCCCc-----CCEEEECCHHHHHHHHHHHhccc----------cCCCCEEEEcCCcCCchHHHH
Confidence            344556678899999999986     34899999999999998887432          1124579999999987    4


Q ss_pred             HHHHHhhCCee-----EEEEecCCccccCHHHHHHHHh---hCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCC
Q 018437          168 EKFARYFEVEL-----KEVKLEEGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT  239 (356)
Q Consensus       168 ~~~~~~~G~~v-----~~v~~~~~~~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~  239 (356)
                      ...++..|+++     ..+|.+. ++.+|+++|+++|+   +++++|++++++|+||.+.|+++|.++|+++      |+
T Consensus       173 ~~~~~~~G~~~~~~~v~~~~~~~-~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~------g~  245 (465)
T 3e9k_A          173 ESQLQLHGLNIEESMRMIKPREG-EETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAK------GC  245 (465)
T ss_dssp             HHHHHHTTCCHHHHEEEECCCTT-CSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHT------TC
T ss_pred             HHHHHHcCCcceeeeEEEecCCC-CCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHc------CC
Confidence            45677789885     2334444 48999999999997   5789999999999999999999999999999      99


Q ss_pred             cEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEEeCCCCCccccccccCCCCCCC-------
Q 018437          240 PIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQ-------  311 (356)
Q Consensus       240 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~-------  311 (356)
                      ++|+|++++.+..+       .++...++|++++++||++. +|.|+|+++++++ ...........|.++..       
T Consensus       246 ~vi~D~a~~~g~~~-------~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~  317 (465)
T 3e9k_A          246 YVGFDLAHAVGNVE-------LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEK-HAHTIKPALVGWFGHELSTRFKMD  317 (465)
T ss_dssp             EEEEECTTTTTTSC-------CCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGG-GTTTSCCSSCCGGGBCHHHHTTCC
T ss_pred             EEEEEhhhhcCCcC-------CchhhcCCCEEEECcccccccCCCceEEEEEcHH-HHhhcCCcccCccCCCCCcccccC
Confidence            99999999876553       33333478999999999994 7888999998654 22111001112222210       


Q ss_pred             --C------CccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          312 --P------TFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       312 --~------~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                        .      .....||.+....+++.+++..+...|++++.++..++++||
T Consensus       318 ~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l  368 (465)
T 3e9k_A          318 NKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYL  368 (465)
T ss_dssp             SCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence              0      011236888888999999999998888888888888887765

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.91  E-value=5e-24  Score=203.80  Aligned_cols=263  Identities=16%  Similarity=0.087  Sum_probs=185.3

Q ss_pred             ccccccCCCChHHHHHHHHHHhcccCCCcccC-----cchHHHHHHHHHHHHHHhCC-CCCCCCCCCeEEeCChhHHHHH
Q 018437           59 NLASFVTTWMEPECDKLVMASINKNYVDMDEY-----PVTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAIML  132 (356)
Q Consensus        59 ~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~-----~~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~Ggt~a~~~  132 (356)
                      +|....+++.++.+.+++.+.+.....++..+     ........++++++++++|. ++     ..+++|+|||+|+..
T Consensus        26 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~g~t~a~~~  100 (406)
T 1kmj_A           26 YLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA-----EELVFVRGTTEGINL  100 (406)
T ss_dssp             ECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCG-----GGEEEESSHHHHHHH
T ss_pred             EecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCC-----CeEEEeCChhHHHHH
Confidence            44444455566788888887776432222211     12345667888999999998 33     348999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEE
Q 018437          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAA  208 (356)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~  208 (356)
                      ++.+++....         ..+++|+++.++|++    +...++..|++++.+|++++ +.+|+++|++++++++++|++
T Consensus       101 ~~~~~~~~~~---------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~v~~  170 (406)
T 1kmj_A          101 VANSWGNSNV---------RAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD-GTLQLETLPTLFDEKTRLLAI  170 (406)
T ss_dssp             HHHHTHHHHC---------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT-SCBCGGGHHHHCCTTEEEEEE
T ss_pred             HHHHhhhhcC---------CCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCC-CCcCHHHHHHHhccCCeEEEE
Confidence            9998853100         114789999999876    34557778999999999864 899999999999989999999


Q ss_pred             ecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEE
Q 018437          209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       209 ~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      ++++||||.+.|+++|.++|+++      ++++|+|++|+.+..+       .++...+.|.++.|+||++ +|.|+|++
T Consensus       171 ~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~~~~~g~~~-------~~~~~~~~d~~~~s~~K~~-g~~G~G~~  236 (406)
T 1kmj_A          171 THVSNVLGTENPLAEMITLAHQH------GAKVLVDGAQAVMHHP-------VDVQALDCDFYVFSGHKLY-GPTGIGIL  236 (406)
T ss_dssp             ESBCTTTCCBCCHHHHHHHHHHT------TCEEEEECTTTTTTSC-------CCHHHHTCSEEEEEGGGTT-SCTTCEEE
T ss_pred             eCCCccccCcCCHHHHHHHHHHc------CCEEEEEchhhcCCCC-------CcccccCCCEEEEEchhcc-CCCCcEEE
Confidence            99999999999999999999999      9999999999865432       1222226899999999977 78889999


Q ss_pred             EEeCCCCCccccccccCCCCCC---------------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCc
Q 018437          289 VWRTKDDLPDELVFHINYLGSD---------------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPF  353 (356)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~  353 (356)
                      +++++ .. +.+.  ....++.               .......|+.+....+++.++++.+...+++++.++..+++++
T Consensus       237 ~~~~~-~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  312 (406)
T 1kmj_A          237 YVKEA-LL-QEMP--PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHY  312 (406)
T ss_dssp             EECHH-HH-HHCC--CSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             EEeHH-HH-hhcC--CcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            98642 21 1111  0001110               0000113566666666776777777656666666666666555


Q ss_pred             c
Q 018437          354 L  354 (356)
Q Consensus       354 l  354 (356)
                      |
T Consensus       313 l  313 (406)
T 1kmj_A          313 A  313 (406)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.91  E-value=4.8e-24  Score=202.33  Aligned_cols=253  Identities=10%  Similarity=0.050  Sum_probs=180.6

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      |.++++.+.+++.+.+..   +  .++....+.+++++++++++|++.+.   ...++|+||++|+..++.++..+    
T Consensus        27 p~~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~~~~~la~~~g~~~~~---~~i~~~~ggt~al~~~~~~~~~~----   94 (376)
T 3f0h_A           27 PVMSSEEVRAIGAEQVPY---F--RTTEFSSTMLENEKFMLEYAKAPEGS---KAVFMTCSSTGSMEAVVMNCFTK----   94 (376)
T ss_dssp             SCCCCHHHHHHHTSCCCC---C--SSHHHHHHHHHHHHHHHHHHTCCTTC---EEEEESSCHHHHHHHHHHHHCCT----
T ss_pred             CCCCcHHHHHHhcCCCCC---C--CCHHHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCChhHHHHHHHHhccCC----
Confidence            445567888877654421   1  24455677889999999999997521   22445889999999999887532    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHH--HHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHH
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK  222 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~  222 (356)
                               +++|+++.+.+++..  ..+...|++++.++++.+ +.+|+++|++++++++++|++++++||||.+.|++
T Consensus        95 ---------gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~  164 (376)
T 3f0h_A           95 ---------KDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHG-KKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTM  164 (376)
T ss_dssp             ---------TCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCTT-CCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHH
T ss_pred             ---------CCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHhhccCceEEEEecccCCcceecCHH
Confidence                     578888887666533  456677999999999864 89999999999988999999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccccc
Q 018437          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF  302 (356)
Q Consensus       223 ~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~  302 (356)
                      +|.++|+++      |+++|+|++++.+..+       .++...++|.++.++||++++|.|+|+++++++ .. +.+..
T Consensus       165 ~i~~l~~~~------~~~li~D~~~~~~~~~-------~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~-~~~~~  229 (376)
T 3f0h_A          165 MIGEFCKKN------NMFFVCDCVSAFLADP-------FNMNECGADVMITGSQKVLACPPGISVIVLAPR-GV-ERVEK  229 (376)
T ss_dssp             HHHHHHHHT------TCEEEEECTTTTTTSC-------CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHH-HH-HHHHT
T ss_pred             HHHHHHHHc------CCEEEEEcCccccCcc-------ccccccCccEEEecCcccccCCCceEEEEECHH-HH-HHhhc
Confidence            999999999      9999999999875442       222223689999999999988999999887643 21 11110


Q ss_pred             --ccCC-CCCC-----CCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCcc
Q 018437          303 --HINY-LGSD-----QPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFL  354 (356)
Q Consensus       303 --~~~~-~~~~-----~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l  354 (356)
                        ...+ ....     .......++.+....+++.+++..+..+ |++++.++..+++++|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l  290 (376)
T 3f0h_A          230 SKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADF  290 (376)
T ss_dssp             CCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence              0111 1000     0000112344444457777888877666 6888888877777665

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.91  E-value=1.2e-23  Score=198.98  Aligned_cols=194  Identities=15%  Similarity=0.105  Sum_probs=152.2

Q ss_pred             CCChHHHHHHHHHHhcccC----C-CcccCcchHHHHHHHHHH-HHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           66 TWMEPECDKLVMASINKNY----V-DMDEYPVTTELQNRCVNM-IAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        66 ~~~~~~v~~~i~~~~~~~~----~-~~~~~~~~~~le~~~~~~-la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      .++++.+.+++.+.+....    . .+...........+++++ +++++|.+       .+++|+|||+|+..++.++..
T Consensus        19 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-------~v~~~~g~t~a~~~~~~~~~~   91 (371)
T 2e7j_A           19 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-------VARVTNGAREAKFAVMHSLAK   91 (371)
T ss_dssp             CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-------EEEEESSHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-------EEEEeCChHHHHHHHHHHHhC
Confidence            3456788888887765321    0 011111223345577888 99999886       389999999999999998743


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEE--ecCCccccCHHHHHHHHh-----hCceEEEEecCC
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK--LEEGYYVMNPVKAVELVD-----ENTICVAAILGS  212 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~--~~~~~~~~d~~~L~~~i~-----~~~~~v~~~~~~  212 (356)
                      +             +++|+++.++|+++...++..|++++.+|  ++++ +.+|+++|+++++     +++++|++++++
T Consensus        92 ~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~  157 (371)
T 2e7j_A           92 K-------------DAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD-YAITPENFAQTIEETKKRGEVVLALITYPD  157 (371)
T ss_dssp             T-------------TCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTT-CCCCHHHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             C-------------CCEEEEccCcchHHHHHHHHcCCeEEEeecccCCC-CCcCHHHHHHHHHhhcccCCeEEEEEECCC
Confidence            2             57999999999999999999999999999  7764 8999999999998     688999999999


Q ss_pred             CcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       213 ~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      ||+|.+.|+++|.++|+++      |+++|+|++|+.+..+       .++...++|.++.|+||++++|.++|++++++
T Consensus       158 nptG~~~~~~~i~~~~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~  224 (371)
T 2e7j_A          158 GNYGNLPDVKKIAKVCSEY------DVPLLVNGAYAIGRMP-------VSLKEIGADFIVGSGHKSMAASGPIGVMGMKE  224 (371)
T ss_dssp             TTTCCCCCHHHHHHHHHTT------TCCEEEECTTTBTTBC-------CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECT
T ss_pred             CCCcccCCHHHHHHHHHHc------CCeEEEECccccCCCC-------CChhhcCCCEEEecCCcCCCCCCCcEEEEEec
Confidence            9999999999999999999      9999999999876542       12222257899999999998999999999876


Q ss_pred             C
Q 018437          293 K  293 (356)
Q Consensus       293 ~  293 (356)
                      +
T Consensus       225 ~  225 (371)
T 2e7j_A          225 E  225 (371)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.90  E-value=4.4e-24  Score=202.88  Aligned_cols=261  Identities=12%  Similarity=0.019  Sum_probs=175.0

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      |..+++.+.+++.+....   ++  ++.......+++++++++++....- ....+++|+|||+|+..++.++...+   
T Consensus        13 p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~~g~t~al~~~~~~~~~~~---   83 (385)
T 2bkw_A           13 PIILSGAVQKALDVPSLG---HT--SPEFVSIFQRVLKNTRAVFKSAAAS-KSQPFVLAGSGTLGWDIFASNFILSK---   83 (385)
T ss_dssp             SCCCCHHHHHTTSCCCCC---TT--SHHHHHHHHHHHHHHHHHTTCCGGG-TCEEEEEESCTTHHHHHHHHHHSCTT---
T ss_pred             CcCchHHHHHHHhccccc---cC--CHHHHHHHHHHHHHHHHHhCCCCCC-CCceEEEcCchHHHHHHHHHHHhccC---
Confidence            344557777776554432   11  3333444556777788887764200 01348899999999999998874100   


Q ss_pred             HHhcCCCCCCCeEEecCC-C-cchHHHHHHhhCCeeEEEEe-cCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCC
Q 018437          145 RKEQGKPYDKPNIVTGAN-V-QVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED  220 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~-~-h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~  220 (356)
                             ..+++|+++.. . |.++...++..|++++.+|+ ++ ++.+|+++|++++++ ++++|++++++||||.+.|
T Consensus        84 -------~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~  155 (385)
T 2bkw_A           84 -------APNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKI-GESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD  155 (385)
T ss_dssp             -------CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSST-TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred             -------CCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCC-CCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC
Confidence                   01467776644 3 33334677888999999999 75 489999999999987 8999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccc
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL  300 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~  300 (356)
                      +++|.++|++++.    ++++|+|++|+.+..+       .++...++|.++.++||++++|.|+|+++++++ .+.+.+
T Consensus       156 l~~i~~~~~~~~~----~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~-~~~~~l  223 (385)
T 2bkw_A          156 LKAISQAIKQTSP----ETFFVVDAVCSIGCEE-------FEFDEWGVDFALTASQKAIGAPAGLSISLCSSR-FMDYAL  223 (385)
T ss_dssp             HHHHHHHHHHHCT----TSEEEEECTTTTTTSC-------CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHH-HHHHHT
T ss_pred             HHHHHHHHHhhCC----CCEEEEECccccCCcc-------ccccccCceEEEecCccccccCCcceEEEEcHH-HHHHHH
Confidence            9999999999832    6999999999754332       223333689999999999999999999998653 211011


Q ss_pred             c-----cccCCCCC-----------CCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          301 V-----FHINYLGS-----------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       301 ~-----~~~~~~~~-----------~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      .     ....|.+.           ........++.+....+++.++++.+...|++++.++..+++++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  293 (385)
T 2bkw_A          224 NDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWF  293 (385)
T ss_dssp             CHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             hhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            0     00011100           000000124666666677778888776666777777777666654

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.90  E-value=6.6e-23  Score=193.13  Aligned_cols=252  Identities=11%  Similarity=-0.016  Sum_probs=174.9

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchH-HHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTT-ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~-~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      |..+++.+.+++.+.+.    ++  ++... ....++++++++++|.+.+   ...+++|+||++|+..++.+++.+   
T Consensus        12 p~~~~~~v~~a~~~~~~----~~--~~~~~~~~~~~l~~~la~~~g~~~~---~~~v~~~~g~t~a~~~~~~~~~~~---   79 (366)
T 1m32_A           12 PLTTSRTVKEAMLFDSC----TW--DDDYNIGVVEQIRQQLTALATASEG---YTSVLLQGSGSYAVEAVLGSALGP---   79 (366)
T ss_dssp             SCCCCHHHHHTTCCCCC----TT--SHHHHTTTHHHHHHHHHHHHCSSSS---EEEEEEESCHHHHHHHHHHHSCCT---
T ss_pred             CcCCCHHHHHHHhhhhc----CC--CHHHHHHHHHHHHHHHHHHhCCCCc---CcEEEEecChHHHHHHHHHHhcCC---
Confidence            44456777777755331    11  11112 3455677789999993211   124899999999999999887432   


Q ss_pred             HHHhcCCCCCCCeEEec-CCCcch-HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh--CceEEEEecCCCcccccC
Q 018437          144 KRKEQGKPYDKPNIVTG-ANVQVC-WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE--NTICVAAILGSTLTGEFE  219 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s-~~~h~s-~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~--~~~~v~~~~~~~~tG~~~  219 (356)
                                +++|++. .++|.+ +...+...|++++.+|++++ +.+|+++|++++++  ++++|++++++||||.+.
T Consensus        80 ----------gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~  148 (366)
T 1m32_A           80 ----------QDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV-ARPDVQAIDAILNADPTISHIAMVHSETTTGMLN  148 (366)
T ss_dssp             ----------TCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC
T ss_pred             ----------CCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhcCCCeEEEEEecccCCcceec
Confidence                      3556554 577875 67778888999999999864 88999999999986  478899999999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccc
Q 018437          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (356)
Q Consensus       220 ~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~  299 (356)
                      |+++|.++|+++      |+++|+|++|+.+..+       .++...++|.++.++||++++|.|+|+++++++ .. +.
T Consensus       149 ~l~~i~~l~~~~------~~~li~Dea~~~~~~~-------~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~-~~-~~  213 (366)
T 1m32_A          149 PIDEVGALAHRY------GKTYIVDAMSSFGGIP-------MDIAALHIDYLISSANKCIQGVPGFAFVIAREQ-KL-AA  213 (366)
T ss_dssp             CHHHHHHHHHHH------TCEEEEECTTTTTTSC-------CCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHH-HH-TT
T ss_pred             CHHHHHHHHHHc------CCEEEEECCccccCcC-------ccccccCccEEEecCcccccCCCceEEEEECHH-HH-Hh
Confidence            999999999999      9999999999864432       223223689999999999989999999998753 11 11


Q ss_pred             cccc-cCCCCCC--------CCCccccCCCChhHHHHHHHHHHHhCHHH-HHHHHHHHHhccCcc
Q 018437          300 LVFH-INYLGSD--------QPTFTLNFSKGSSQIIAQYYQFIRLGFEE-ITFTFISSLKVCPFL  354 (356)
Q Consensus       300 ~~~~-~~~~~~~--------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G-~~~~~~~~~~~a~~l  354 (356)
                      +... ..|....        .......++.+....+++.++++.+...| ++++.++..+++++|
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l  278 (366)
T 1m32_A          214 CKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSL  278 (366)
T ss_dssp             CTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHH
Confidence            1100 0111000        00000124555655667778888776666 777777777766655

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.90  E-value=8.6e-23  Score=194.53  Aligned_cols=250  Identities=12%  Similarity=-0.022  Sum_probs=177.6

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.+......|...  ..++++++++++++.+|.+.+.   ..+++|+||++++..++.++..+       
T Consensus        41 ~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~---~~i~~~~g~~~a~~~~~~~l~~~-------  108 (391)
T 3dzz_A           41 IAPEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKE---DWCVFASGVVPAISAMVRQFTSP-------  108 (391)
T ss_dssp             CCHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCG---GGEEEESCHHHHHHHHHHHHSCT-------
T ss_pred             CCHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCH---HHEEECCCHHHHHHHHHHHhCCC-------
Confidence            45788999988876543343332  5789999999999999955321   45899999999999999887432       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec--CCccccCHHHHHHHHh-hCceEEEEecCCCccccc---CCH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEF---EDV  221 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~---~~i  221 (356)
                            +++|+++.++|.++...++..|++++.+|++  ++++.+|+++|+++++ +++++|++++++||||.+   +++
T Consensus       109 ------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l  182 (391)
T 3dzz_A          109 ------GDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEV  182 (391)
T ss_dssp             ------TCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHH
T ss_pred             ------CCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHH
Confidence                  5799999999999999999999999999985  3446799999999998 689999999999999999   789


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C--CCce--EEEEcCCcCCC-CCcCeeEEEEeCCCC
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L--PLVK--SINVSGHKYGL-VYAGVGWVVWRTKDD  295 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~--~~~D--s~~~~~hK~l~-~P~g~g~l~~~~~~~  295 (356)
                      ++|.++|+++      |+++|+|++|+++...   ......+. .  ...|  .+..++||+++ .+.++|+++.++++.
T Consensus       183 ~~i~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~  253 (391)
T 3dzz_A          183 KRIAELCAKH------QVLLISDEIHGDLVLT---DEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDL  253 (391)
T ss_dssp             HHHHHHHHHT------TCEEEEECTTTTCBCS---SCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHH
T ss_pred             HHHHHHHHHC------CCEEEEecccccccCC---CCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHH
Confidence            9999999999      9999999999875541   11112222 1  1145  88889999974 556789998764433


Q ss_pred             CccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      . +.+.........        ++.+....+++..++.. +.+.++++.++..+++++|
T Consensus       254 ~-~~~~~~~~~~~~--------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l  302 (391)
T 3dzz_A          254 R-ARAEESFFLAGI--------GEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYA  302 (391)
T ss_dssp             H-HHHHHHHHHHTC--------SSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHhhcc--------CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHH
Confidence            2 111110000000        12222334444555554 4555666666666555544

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.90  E-value=1.9e-23  Score=196.77  Aligned_cols=252  Identities=12%  Similarity=0.025  Sum_probs=182.1

Q ss_pred             CCCChHHHHHHHHHHhcccC-CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      |..+++.+.+++.+.+.... .....++...++.+++++++++++|.+..    ..+++|+||++|+..++.++..    
T Consensus        12 p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~v~~~~g~t~al~~~~~~l~~----   83 (362)
T 3ffr_A           12 PSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSN----YEVLFLASATEIWERIIQNCVE----   83 (362)
T ss_dssp             SCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT----EEEEEESCHHHHHHHHHHHHCS----
T ss_pred             CcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCCchHHHHHHHHhccC----
Confidence            33445677777766655433 12224567778888999999999999631    3588999999999999987742    


Q ss_pred             HHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCH
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDV  221 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i  221 (356)
                                 +.+++..+.|++  +...++..|++++.++++.+ +.+|+++|+  +++++++|++++++||||.+.|+
T Consensus        84 -----------~~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l  149 (362)
T 3ffr_A           84 -----------KKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFG-KGFYPADIT--VPADAEIICLTHNETSSGVSMPV  149 (362)
T ss_dssp             -----------SEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCGGGCC--CCTTCCEEEEESEETTTTEECCH
T ss_pred             -----------CcEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCC-CCCCHHHHh--ccCCccEEEEEcCCCCcceeCCH
Confidence                       256666666655  44567778999999999764 899999998  77889999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccc
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV  301 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~  301 (356)
                      ++|.++|+++|     |+++|+|++|+.+..+       .++  ..+|.++.++||++++|.|+|+++++++ .. +.+.
T Consensus       150 ~~i~~la~~~p-----~~~li~D~a~~~~~~~-------~~~--~~~d~~~~s~~K~~~~~~G~g~~~~~~~-~~-~~~~  213 (362)
T 3ffr_A          150 EDINTFRDKNK-----DALIFVDAVSSLPYPK-------FDW--TKIDSVFFSVQKCFGLPAGLGVWILNDR-VI-EKSK  213 (362)
T ss_dssp             HHHTTSGGGST-----TSEEEEECTTTTTSSC-------CCT--TSCSEEEEETTSTTCCCSCCEEEEEEHH-HH-HHHH
T ss_pred             HHHHHHHHhCC-----CCEEEEecccccCCcc-------cCh--hHCcEEEEecccccCCCCceEEEEECHH-HH-HHhh
Confidence            99999999984     7999999998764432       222  2389999999999988999999888653 21 1111


Q ss_pred             c-cc-----CCCCCC------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          302 F-HI-----NYLGSD------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       302 ~-~~-----~~~~~~------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      . ..     .+....      .......++.+....+++..+++.+..+|++++.++..++++++
T Consensus       214 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  278 (362)
T 3ffr_A          214 ALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALI  278 (362)
T ss_dssp             HHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             hccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            0 00     000000      00011246677777778888888887777888888888877765

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.90  E-value=8.2e-24  Score=201.30  Aligned_cols=256  Identities=12%  Similarity=-0.061  Sum_probs=186.2

Q ss_pred             cccCCCChHHHHHHHHHHhcc---cCCC----cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCChhHHHHHH
Q 018437           62 SFVTTWMEPECDKLVMASINK---NYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLA  133 (356)
Q Consensus        62 ~~~~~~~~~~v~~~i~~~~~~---~~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~a  133 (356)
                      .+.+.+.++.|.+++.+.+.+   |+..    ...++.+.++.+++++.+++++|++++    ..++| |+|||+++.++
T Consensus        18 ~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~----~evif~t~~~T~a~n~a   93 (377)
T 3e77_A           18 LYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDN----YKVIFLQGGGCGQFSAV   93 (377)
T ss_dssp             EECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----CeEEEEcCchHHHHHHH
Confidence            444556778999999887753   2211    122456778888999999999999742    23777 57999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecC
Q 018437          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      +..+..+           ..++++++...+|.+  +.+.++..|+.++.++++.+ +..+++.++.++++++++|.+++.
T Consensus        94 ~~~l~~~-----------~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~-~~~~~~~~~~~i~~~t~lV~~~h~  161 (377)
T 3e77_A           94 PLNLIGL-----------KAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGS-YTKIPDPSTWNLNPDASYVYYCAN  161 (377)
T ss_dssp             HHHHGGG-----------STTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSS-SCSCCCGGGCCCCTTCSCEEEESE
T ss_pred             HHhccCC-----------CCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCC-cCCCCChHHhccCCCccEEEEeCc
Confidence            9877532           013577666666655  34555667888888888654 567788888888889999999999


Q ss_pred             CCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       212 ~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      +|.+|++.|+     +|+++      ++++|||++++.+..|       ++++.  .|.+++++|||+ +|.|+|++++|
T Consensus       162 et~tG~~~pi-----i~~~~------~~~~~vD~~q~~g~~~-------id~~~--~~~~~~s~~K~~-gp~G~g~l~~~  220 (377)
T 3e77_A          162 ETVHGVEFDF-----IPDVK------GAVLVCDMSSNFLSKP-------VDVSK--FGVIFAGAQKNV-GSAGVTVVIVR  220 (377)
T ss_dssp             ETTTTEECSS-----CCCCT------TCCEEEECTTTTTSSC-------CCGGG--CSEEEEEGGGTT-SCTTCEEEEEE
T ss_pred             cCchheEchh-----hhccC------CCEEEEEcccccCCCC-------Cchhh--cCEEEEeccccc-CCCccEEEEEc
Confidence            9999999998     46777      9999999999876663       45543  235889999999 79999999998


Q ss_pred             CCCCCccccccccCCCCCC--CCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          292 TKDDLPDELVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                      ++.+. ..-...+.|+...  .......+|++...++++..+++.+-.+ |++++.++..+++++|.
T Consensus       221 ~~~l~-~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~  286 (377)
T 3e77_A          221 DDLLG-FALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIY  286 (377)
T ss_dssp             TTSCS-CCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh-hccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            75331 1100111222100  0112235899998899999999999888 89999999999988874

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.89  E-value=9.5e-23  Score=200.85  Aligned_cols=281  Identities=12%  Similarity=-0.007  Sum_probs=186.5

Q ss_pred             HHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhcccC--C-----CcccCcchHHHHHHHHHHHHHHhCCCCC
Q 018437           41 AAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNY--V-----DMDEYPVTTELQNRCVNMIAHLFNTPVA  113 (356)
Q Consensus        41 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~--~-----~~~~~~~~~~le~~~~~~la~l~g~~~~  113 (356)
                      ++.+.+.+..... ...++|.... +++++.+.+++.+.+....  +     .|...+...++|+.+++++++++|++.+
T Consensus        31 ~~~~~~~~~~~~~-~~~i~L~a~e-~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~  108 (483)
T 1rv3_A           31 EVYDIIKKESNRQ-RVGLELIASE-NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQ  108 (483)
T ss_dssp             HHHHHHHHHHHHH-HSSEECCTTC-CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHh-hcCeEEEcCC-CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcc
Confidence            3555554443322 1223443332 3556889999887775422  1     1223345678999999999999999852


Q ss_pred             CCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH--------HHHhhCCeeEEEEe--
Q 018437          114 DDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK--------FARYFEVELKEVKL--  183 (356)
Q Consensus       114 ~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~--------~~~~~G~~v~~v~~--  183 (356)
                      + ....+++++|+ ++|..++.++.++             +++|++++++|.++..        .+...|..++.+++  
T Consensus       109 ~-~~~~V~~~sGs-~an~~~~~all~p-------------GD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~  173 (483)
T 1rv3_A          109 C-WGVNVQPYSGS-PANFAVYTALVEP-------------HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV  173 (483)
T ss_dssp             T-EEEECCCSSHH-HHHHHHHHHHTCT-------------TCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred             c-CceEEEECCcH-HHHHHHHHHhcCC-------------CCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc
Confidence            1 00124555554 8888878777542             5799999998877653        23445544555555  


Q ss_pred             cCCccccCHHHHHHHHh-hCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc
Q 018437          184 EEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD  262 (356)
Q Consensus       184 ~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~  262 (356)
                      +++++.+|+++|+++++ ++|++|++ +++|++ .+.|+++|.++|+++      |+++|+|+||+.+..+.  +.....
T Consensus       174 ~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~------g~~livD~ah~~g~~~~--~~~~~p  243 (483)
T 1rv3_A          174 NPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADEN------GAYLMADMAHISGLVVA--GVVPSP  243 (483)
T ss_dssp             CTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHT------TCEEEEECTTTHHHHHH--TSSCCG
T ss_pred             ccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHc------CCEEEEEccchhccccc--CCCCCC
Confidence            64469999999999998 78999988 888887 889999999999999      99999999987554421  111111


Q ss_pred             ccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccc----cCC-----CCCCCCCccccCCCChhHHHHHHHHHH
Q 018437          263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH----INY-----LGSDQPTFTLNFSKGSSQIIAQYYQFI  333 (356)
Q Consensus       263 ~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~tr~~~~~~~~~~~l~  333 (356)
                        .+++|.++.++||++.+|.| |+++++++.. .  +...    ..|     +... ......|+.+...++++.++++
T Consensus       244 --~~~~div~~s~~K~l~Gprg-G~i~~~~~~~-~--~~~~~g~~~~y~~~~~~~~~-~~~~~~g~~~~~~iaal~~Al~  316 (483)
T 1rv3_A          244 --FEHCHVVTTTTHKTLRGCRA-GMIFYRRGVR-S--VDPKTGKEILYNLESLINSA-VFPGLQGGPHNHAIAGVAVALK  316 (483)
T ss_dssp             --GGTCSEEEEESSGGGCCCSC-EEEEEECSBC-C---------CCBCCHHHHHHHH-HTTTTCCSCCHHHHHHHHHHHH
T ss_pred             --CCCCcEEEecCcccCCCCCc-eEEEEcchhh-h--hccccCcchhhHHHHHhhhh-cCCcccCCccHHHHHHHHHHHH
Confidence              23689999999999999998 9999986421 0  0000    000     0000 0011246666766778888888


Q ss_pred             HhCHHHHHHHHHHHHhccCccc
Q 018437          334 RLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       334 ~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      .+..++++++.++..+++++|+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~l~  338 (483)
T 1rv3_A          317 QAMTPEFKEYQRQVVANCRALS  338 (483)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhChhHHHHHHHHHHHHHHHH
Confidence            8877788888888888877763

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.89  E-value=4.1e-22  Score=190.01  Aligned_cols=213  Identities=10%  Similarity=0.014  Sum_probs=163.8

Q ss_pred             CCCCcccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHH
Q 018437           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (356)
Q Consensus        54 ~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (356)
                      ++..++|..+.+.. +++.+.+++.+.++.....|...++..++++++.+++.+.+|++.+.   ..+++|+||++|+..
T Consensus        29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~~~a~~~  105 (388)
T 1j32_A           29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA---DNILVTNGGKQSIFN  105 (388)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEcCCHHHHHHH
Confidence            33334454444432 35778888887775433345555578899999999999999975422   358999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecC
Q 018437          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      ++.++.++             +++|+++.++|+++...++..|++++.+|+++ +++.+|+++|++++++++++|++++|
T Consensus       106 ~~~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p  172 (388)
T 1j32_A          106 LMLAMIEP-------------GDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTP  172 (388)
T ss_dssp             HHHHHCCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESS
T ss_pred             HHHHhcCC-------------CCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCC
Confidence            99887432             46899999999999999999999999999875 24789999999999888999999999


Q ss_pred             CCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc---cccc--CCCceEEEEcCCcCCCCCc
Q 018437          212 STLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE---WDFR--LPLVKSINVSGHKYGLVYA  283 (356)
Q Consensus       212 ~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~---~~~~--~~~~Ds~~~~~hK~l~~P~  283 (356)
                      +||||.+.   ++++|.++|+++      |+++|+|++|+++...   ....   ..+.  ..+.|.+..++||++ ++.
T Consensus       173 ~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~  242 (388)
T 1j32_A          173 SNPTGMVYTPDEVRAIAQVAVEA------GLWVLSDEIYEKILYD---DAQHLSIGAASPEAYERSVVCSGFAKTY-AMT  242 (388)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCT---TCCCCCGGGSCHHHHHTEEEEEESTTTT-TCT
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHc------CCEEEEEccchhcccC---CCCCCCHHHccccccCCEEEEeechhcc-CCc
Confidence            99999984   599999999999      9999999999875441   1111   1111  134788999999998 444


Q ss_pred             C--eeEEEEeC
Q 018437          284 G--VGWVVWRT  292 (356)
Q Consensus       284 g--~g~l~~~~  292 (356)
                      |  +|+++.++
T Consensus       243 G~r~G~~~~~~  253 (388)
T 1j32_A          243 GWRVGFLAGPV  253 (388)
T ss_dssp             TTCCEEEECCH
T ss_pred             ccceEEEEeCH
Confidence            5  89998753

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.89  E-value=2.2e-22  Score=193.57  Aligned_cols=255  Identities=16%  Similarity=0.004  Sum_probs=173.2

Q ss_pred             CCCChHHHHHHHHHHhcccCCCccc---C-cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDE---Y-PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~---~-~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      ++++++.+.+++.+.+....+++..   . .+......++++++++++|+++     ..+++|+||++++..++.+++..
T Consensus        37 ~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~al~~al~~~~~~  111 (416)
T 1qz9_A           37 LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARD-----GEVVVTDTTSINLFKVLSAALRV  111 (416)
T ss_dssp             SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCT-----TSEEECSCHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCc-----ccEEEeCChhHHHHHHHHhhccc
Confidence            3355567888888777543222211   0 1233556678899999999975     24789999999998888876521


Q ss_pred             HHHHHHhcCCCCCCC-eEEecCCCcchHHHHH----Hhh--CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          141 WQQKRKEQGKPYDKP-NIVTGANVQVCWEKFA----RYF--EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~-~vi~s~~~h~s~~~~~----~~~--G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      ...  ..+     ++ .|+++..+|.++...+    +..  |++++.+|+        +++|++++++++++|++++++|
T Consensus       112 ~~~--~~~-----gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~~~l~~~i~~~~~~v~~~~~~n  176 (416)
T 1qz9_A          112 QAT--RSP-----ERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--------PEELPQAIDQDTAVVMLTHVNY  176 (416)
T ss_dssp             HHH--HST-----TCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--------GGGHHHHCSTTEEEEEEESBCT
T ss_pred             ccc--cCC-----CCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--------HHHHHHHhCCCceEEEEecccc
Confidence            000  001     34 4667778998765543    334  888888875        6778899988899999999999


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCe-eEEEEeC
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV-GWVVWRT  292 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~-g~l~~~~  292 (356)
                      |||.+.|+++|.++|+++      |+++|+|++|+.+..+       .++...++|.++.|+||+++++.|+ |++++++
T Consensus       177 ptG~~~~l~~i~~l~~~~------~~~li~D~a~~~g~~~-------~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~  243 (416)
T 1qz9_A          177 KTGYMHDMQALTALSHEC------GALAIWDLAHSAGAVP-------VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSP  243 (416)
T ss_dssp             TTCBBCCHHHHHHHHHHH------TCEEEEECTTTTTTSC-------CCHHHHTCSEEEECSSSTTCCCTTCCCEEEECT
T ss_pred             CcccccCHHHHHHHHHHc------CCEEEEEccccccCcC-------CChhhcCCCEEEecCcccCCCCCCCeEEEEECH
Confidence            999999999999999999      9999999999854332       2222225899999999998888888 9999875


Q ss_pred             CCCCcccccc-ccCCCCCCC-------------CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          293 KDDLPDELVF-HINYLGSDQ-------------PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       293 ~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      + .. +.+.. ...|.+...             ......+|.+....+++.++++.+..++++++.++..+++++|
T Consensus       244 ~-~~-~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  317 (416)
T 1qz9_A          244 Q-LC-DLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLF  317 (416)
T ss_dssp             T-TT-TTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             H-HH-hccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            4 32 11110 011111100             0011235667766778888888876667777777777666654

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.89  E-value=4.7e-24  Score=203.84  Aligned_cols=255  Identities=11%  Similarity=-0.068  Sum_probs=172.2

Q ss_pred             cccccCCCChHHHHHHHHHHhcc---cCCC----cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCChhHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINK---NYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIM  131 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~---~~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~  131 (356)
                      |..-.|++.++.|.+++...+..   |+..    ...++.+.++.+++++.+++++|++++    ..+++ |+|||+++.
T Consensus        30 l~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~----~evif~t~~~T~a~n  105 (386)
T 3qm2_A           30 NFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSN----YKVLFCHGGGRGQFA  105 (386)
T ss_dssp             ECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTT----EEEEEEESCTTHHHH
T ss_pred             cccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCCchHHHH
Confidence            44555677788999998766532   2211    112345567777899999999999641    23677 689999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEec--CCccc-cCHHHHHHHHhhCceEE
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLE--EGYYV-MNPVKAVELVDENTICV  206 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~--~~~~~-~d~~~L~~~i~~~~~~v  206 (356)
                      +++..+..+             ++++++...+|++  +...++..| +++.++++  +. +. +|+++++++++++|++|
T Consensus       106 ~ai~~l~~~-------------gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~-G~~~~~~~~~~~l~~~t~lV  170 (386)
T 3qm2_A          106 GVPLNLLGD-------------KTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVD-GKRAVKPMREWQLSDNAAYL  170 (386)
T ss_dssp             HHHHHHCTT-------------CCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEET-TEEEECCGGGCCCCTTCSCE
T ss_pred             HHHHhccCC-------------CCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccC-CCCCCchHHHhhcCCCCcEE
Confidence            998876432             3555443333333  444556678 89999998  43 54 88888999999999999


Q ss_pred             EEecCCCccccc-CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCe
Q 018437          207 AAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV  285 (356)
Q Consensus       207 ~~~~~~~~tG~~-~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~  285 (356)
                      .+++.+|.+|++ .|+++|+     +      ++++|||++++.+..       ++|++..  |.+++++|||+ +|.|+
T Consensus       171 ~~~h~et~tG~~i~pi~~i~-----~------g~~~~vDa~qs~g~~-------pidv~~~--~~~~~s~hK~l-GP~G~  229 (386)
T 3qm2_A          171 HYCPNETIDGIAIDETPDFG-----P------EVVVTADFSSTILSA-------PLDVSRY--GVIYAGAQKNI-GPAGL  229 (386)
T ss_dssp             EECSEETTTTEECCCCCCCC-----T------TCCEEEECTTTTTSS-------CCCGGGC--SEEEEETTTTT-CCTTE
T ss_pred             EEECCcCCcCEecCchhhhc-----C------CCEEEEEcccccCCC-------CCCcccc--CEEEEeccccc-CCCcc
Confidence            999999999995 9999986     7      999999999987666       3455433  45678999999 69999


Q ss_pred             eEEEEeCCCCCccccccccCCCCC--CCCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          286 GWVVWRTKDDLPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       286 g~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                      |++++|++... ......+.++..  ........+|.+...++++..+++.+-.+ |++++.++..+++++|.
T Consensus       230 g~l~v~~~~~~-~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~  301 (386)
T 3qm2_A          230 TLVIVREDLLG-KAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLY  301 (386)
T ss_dssp             EEEEEEGGGCS-CCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECHHHHh-hhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            99999875321 110011112110  00111234788888899999999999888 89999999999988764

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.88  E-value=2.3e-21  Score=185.43  Aligned_cols=218  Identities=14%  Similarity=0.055  Sum_probs=165.3

Q ss_pred             cccccccCC-CChHHHHHHHHHHhccc----CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHH
Q 018437           58 LNLASFVTT-WMEPECDKLVMASINKN----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (356)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~i~~~~~~~----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (356)
                      ++|..+.+. ++++.+.+++.+.+...    ...|....+..++++++.+++++.+|.+.+.   ..+++|+||++++..
T Consensus        38 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~---~~i~~~~g~~~al~~  114 (398)
T 3ele_A           38 YDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNA---DNLYMTMGAAASLSI  114 (398)
T ss_dssp             EECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESSHHHHHHH
T ss_pred             EEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCCh---HHEEEccCHHHHHHH
Confidence            345444444 34578888888777542    2344455677899999999999999975422   458999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC-CeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecC
Q 018437          133 AGLAFKRKWQQKRKEQGKPYDK-PNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~-~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      ++.++.++             + ++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|++++|
T Consensus       115 ~~~~l~~~-------------g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p  181 (398)
T 3ele_A          115 CFRALTSD-------------AYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSP  181 (398)
T ss_dssp             HHHHHCCS-------------TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSS
T ss_pred             HHHHHcCC-------------CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCC
Confidence            99887542             5 789999999999999999999999999998655899999999999989999999999


Q ss_pred             CCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeE
Q 018437          212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGW  287 (356)
Q Consensus       212 ~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~  287 (356)
                      +||||.+.+   +++|.++|++++++++.++++|+|++|+.+...  ....+........+.+..+++|+++ .+.++|+
T Consensus       182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  259 (398)
T 3ele_A          182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYD--GIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGY  259 (398)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCT--TCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccC--CCCcCChHhhcCCeEEEEehhhcCCCccceeEE
Confidence            999999977   677778999811111119999999999875541  1111122223355677888999986 5577999


Q ss_pred             EEEeCC
Q 018437          288 VVWRTK  293 (356)
Q Consensus       288 l~~~~~  293 (356)
                      ++.+++
T Consensus       260 ~~~~~~  265 (398)
T 3ele_A          260 VLVPDE  265 (398)
T ss_dssp             EECCTT
T ss_pred             EEEcch
Confidence            987654

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.88  E-value=1.3e-21  Score=186.59  Aligned_cols=211  Identities=12%  Similarity=0.019  Sum_probs=160.6

Q ss_pred             ccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCC-eEEeCChhHHHHHHHHH
Q 018437           59 NLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV-GVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        59 ~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~-~~~t~Ggt~a~~~al~~  136 (356)
                      +|..+.+. ++++.+.+++.+.++.....|....+..++++++.+++.+.+|++.+.   .. +++|+||++++..++.+
T Consensus        30 ~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~~v~~~~g~~~a~~~~~~~  106 (389)
T 1gd9_A           30 SLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADP---KTEIMVLLGANQAFLMGLSA  106 (389)
T ss_dssp             ECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCT---TTSEEEESSTTHHHHHHHTT
T ss_pred             ecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC---CCeEEEcCChHHHHHHHHHH
Confidence            44444443 245788888887776443344444567899999999999888965321   35 89999999999999887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      +.++             +++|+++.++|+++...++..|++++.+|+++ +++.+|+++|++++++++++|++++++|||
T Consensus       107 ~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~npt  173 (389)
T 1gd9_A          107 FLKD-------------GEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPT  173 (389)
T ss_dssp             TCCT-------------TCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred             hCCC-------------CCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCC
Confidence            6432             57899999999999999999999999999975 237899999999998889999999999999


Q ss_pred             cccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCC-cCeeEEEE
Q 018437          216 GEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVY-AGVGWVVW  290 (356)
Q Consensus       216 G~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P-~g~g~l~~  290 (356)
                      |.+.   ++++|.++|+++      |+++|+|++|+++...--.......+. ..+.|.+..++||+++.| ..+|+++.
T Consensus       174 G~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  247 (389)
T 1gd9_A          174 GAVLTKKDLEEIADFVVEH------DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA  247 (389)
T ss_dssp             CCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEEC
T ss_pred             CcCCCHHHHHHHHHHHHHc------CCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEE
Confidence            9986   599999999999      999999999987654100000011221 235789999999987422 34799987


Q ss_pred             e
Q 018437          291 R  291 (356)
Q Consensus       291 ~  291 (356)
                      +
T Consensus       248 ~  248 (389)
T 1gd9_A          248 P  248 (389)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.88  E-value=8.5e-22  Score=187.64  Aligned_cols=207  Identities=14%  Similarity=0.064  Sum_probs=158.8

Q ss_pred             cccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|....+. ++++.+.+++.+.+......+..  +..++++++++++++.+|.+.+   ...+++|+||++|+..++.+
T Consensus        35 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~---~~~v~~~~g~~~a~~~~~~~  109 (391)
T 4dq6_A           35 LPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIK---SEWLIYSPGVIPAISLLINE  109 (391)
T ss_dssp             EECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCC---GGGEEEESCHHHHHHHHHHH
T ss_pred             eeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCc---HHHeEEcCChHHHHHHHHHH
Confidence            344444333 34578999998888654434433  4478899999999999995431   13589999999999999988


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec--C-CccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--E-GYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      +.++             +++|+++.++|.++...++..|++++.+|++  + +++.+|+++|++++++ +++|++++|+|
T Consensus       110 ~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~n  175 (391)
T 4dq6_A          110 LTKA-------------NDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHN  175 (391)
T ss_dssp             HSCT-------------TCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBT
T ss_pred             hCCC-------------CCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCC
Confidence            7432             5799999999999999999999999999987  2 3478999999999988 99999999999


Q ss_pred             ccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCC-----CceEEEEcCCcCCC-CCcC
Q 018437          214 LTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP-----LVKSINVSGHKYGL-VYAG  284 (356)
Q Consensus       214 ~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~-----~~Ds~~~~~hK~l~-~P~g  284 (356)
                      |||.+   +++++|.++|+++      ++++|+|++|+++...   +.....+...     ....+..++||+++ .+.+
T Consensus       176 ptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r  246 (391)
T 4dq6_A          176 PVGRVWTKDELKKLGDICLKH------NVKIISDEIHSDIILK---KHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQ  246 (391)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCT---TCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGC
T ss_pred             CCCcCcCHHHHHHHHHHHHHc------CCEEEeeccccccccC---CCCccCHHHcCccccCcEEEEEechhhccCcccc
Confidence            99999   7789999999999      9999999999875441   1111122111     23367788999874 4567


Q ss_pred             eeEEEEeC
Q 018437          285 VGWVVWRT  292 (356)
Q Consensus       285 ~g~l~~~~  292 (356)
                      +|+++.++
T Consensus       247 ~G~~~~~~  254 (391)
T 4dq6_A          247 SSYVVLPD  254 (391)
T ss_dssp             CEEEECCS
T ss_pred             eEEEEeCC
Confidence            89888764

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.88  E-value=1.9e-21  Score=186.77  Aligned_cols=212  Identities=12%  Similarity=0.025  Sum_probs=160.7

Q ss_pred             CCCCcccccccC---C-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHH
Q 018437           54 GNPRLNLASFVT---T-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (356)
Q Consensus        54 ~~~~~~l~~~~~---~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (356)
                      ++..++|..+.+   . ++++.+.+++.+.+......|....+..++++++.+++.+.+|++.+.   ..+++|+||++|
T Consensus        37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~---~~v~~t~g~~~a  113 (406)
T 1xi9_A           37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP---DDVRVTAAVTEA  113 (406)
T ss_dssp             TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHH
T ss_pred             CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCH---HHEEEcCChHHH
Confidence            333344544444   2 235778888877775433344444567899999999999988876422   458999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEE
Q 018437          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAA  208 (356)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~  208 (356)
                      +..++.++..+             +++|+++.++|.++...++..|++++.+|+++ +++.+|+++|++++++++++|++
T Consensus       114 l~~~~~~l~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i  180 (406)
T 1xi9_A          114 LQLIFGALLDP-------------GDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAV  180 (406)
T ss_dssp             HHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEE
T ss_pred             HHHHHHHhCCC-------------CCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEE
Confidence            99999887432             57899999999999999999999999999975 34789999999999888999999


Q ss_pred             ecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCc-eEEEEcCCcCCC-CC
Q 018437          209 ILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLV-KSINVSGHKYGL-VY  282 (356)
Q Consensus       209 ~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~-Ds~~~~~hK~l~-~P  282 (356)
                      ++++||||.+.|   +++|.++|+++      |+++|+|++|+++...  .... ...+. .+. |.++.++||+++ ..
T Consensus       181 ~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~~--~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G  251 (406)
T 1xi9_A          181 INPNNPTGALYDKKTLEEILNIAGEY------EIPVISDEIYDLMTYE--GEHISPGSLT-KDVPVIVMNGLSKVYFATG  251 (406)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBSS--SCCCCHHHHC-SSSCEEEEEESTTTTCCGG
T ss_pred             ECCCCCCCCCcCHHHHHHHHHHHHHc------CCEEEEEcCccccccC--CCCCCHHHcC-CCceEEEEeccccccCCCc
Confidence            999999999865   99999999999      9999999999875431  1100 11111 345 778889999985 22


Q ss_pred             cCeeEEEE
Q 018437          283 AGVGWVVW  290 (356)
Q Consensus       283 ~g~g~l~~  290 (356)
                      ..+|++++
T Consensus       252 ~r~G~~~~  259 (406)
T 1xi9_A          252 WRLGYMYF  259 (406)
T ss_dssp             GCCEEEEE
T ss_pred             cEEEEEEE
Confidence            34899883

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.88  E-value=8.4e-22  Score=189.61  Aligned_cols=207  Identities=13%  Similarity=0.066  Sum_probs=160.7

Q ss_pred             ccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEeCChhHHHHHHHHH
Q 018437           59 NLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA-VGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        59 ~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~Ggt~a~~~al~~  136 (356)
                      +|..+.++ .+++.+.+++.+.++.....|....+..++++++.+++.+.+|++.+.   . .+++|+||++|+..++.+
T Consensus        29 ~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~~v~~t~g~~~al~~~~~~  105 (411)
T 2o0r_A           29 NLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDP---ETEVLVTVGATEAIAAAVLG  105 (411)
T ss_dssp             ESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCT---TTSEEEEEHHHHHHHHHHHH
T ss_pred             eccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCC---CceEEEeCCHHHHHHHHHHH
Confidence            34443333 345788888888776433344445567899999999999998975321   2 589999999999999988


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC--ccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG--YYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~--~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      +.++             +++|+++.++|.++...++..|++++.+|++++  ++.+|+++|++++++++++|++++++||
T Consensus       106 ~~~~-------------gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~np  172 (411)
T 2o0r_A          106 LVEP-------------GSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNP  172 (411)
T ss_dssp             HCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred             hcCC-------------CCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCC
Confidence            7432             578999999999999999999999999998753  4789999999999888999999999999


Q ss_pred             ccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc---c-CCCceEEEEcCCcCCCCCcC--e
Q 018437          215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF---R-LPLVKSINVSGHKYGLVYAG--V  285 (356)
Q Consensus       215 tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~---~-~~~~Ds~~~~~hK~l~~P~g--~  285 (356)
                      ||.+.|   +++|.++|+++      |+++++|++|+++...   ......+   . ..+.|.+..++||+++ +.|  +
T Consensus       173 tG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~  242 (411)
T 2o0r_A          173 TGAVLSATELAAIAEIAVAA------NLVVITDEVYEHLVFD---HARHLPLAGFDGMAERTITISSAAKMFN-CTGWKI  242 (411)
T ss_dssp             TCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCT---TCCCCCGGGSTTTGGGEEEEEEHHHHTT-CTTTCE
T ss_pred             CCCCCCHHHHHHHHHHHHHc------CCEEEEEccccccccC---CCCCcChhhccCCCCCEEEEeechhhcC-CccceE
Confidence            999865   58999999999      9999999999876541   1111111   1 1467999999999874 445  8


Q ss_pred             eEEEEe
Q 018437          286 GWVVWR  291 (356)
Q Consensus       286 g~l~~~  291 (356)
                      |+++.+
T Consensus       243 G~~~~~  248 (411)
T 2o0r_A          243 GWACGP  248 (411)
T ss_dssp             EEEECC
T ss_pred             EEEeeC
Confidence            999874

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.88  E-value=3.7e-21  Score=183.70  Aligned_cols=224  Identities=14%  Similarity=0.055  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHhhhcCCCCcccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCC
Q 018437           40 EAAYQVINDELMLDGNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA  118 (356)
Q Consensus        40 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~  118 (356)
                      .++.+..++. ..+++..++|..+.+.. +++.+.+++.+.+......|....+..++++++.+++.+.+|++.+.   .
T Consensus        17 ~~~~~~~~~~-~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~   92 (391)
T 3h14_A           17 MDVMEAARRA-EEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDP---G   92 (391)
T ss_dssp             HHHHHHHHHH-HHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCG---G
T ss_pred             HHHHHHHHHH-HhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCH---H
Confidence            3444443332 23444445565555544 35788999888876544445555567889999999999998965422   4


Q ss_pred             CeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHH
Q 018437          119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVE  197 (356)
Q Consensus       119 ~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~  197 (356)
                      .+++|+||++|+..++.++.++             +++|+++.++|..+...++..|++++.+|++++ ++.+|+++|++
T Consensus        93 ~v~~t~g~~~al~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (391)
T 3h14_A           93 RVVITPGSSGGFLLAFTALFDS-------------GDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAG  159 (391)
T ss_dssp             GEEEESSHHHHHHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTT
T ss_pred             HEEEecChHHHHHHHHHHhcCC-------------CCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHh
Confidence            5899999999999998887542             578999999999999999999999999999753 36889999988


Q ss_pred             HHhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEc
Q 018437          198 LVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (356)
Q Consensus       198 ~i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~  274 (356)
                      +   ++++|++++++||||.+.|   +++|.++|+++      ++++|+|++|+.+...   ............+.+..+
T Consensus       160 ~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~i~~~s  227 (391)
T 3h14_A          160 L---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQ------GASFISDEIYHGIEYE---AKAVTALELTDECYVINS  227 (391)
T ss_dssp             S---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBSS---SCCCCGGGTCSSSEEEEE
T ss_pred             c---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEECcchhcccC---CCCcChhhcCCCEEEEEe
Confidence            7   7889999999999999977   88899999999      9999999999875541   111111112344566778


Q ss_pred             CCcCCC-CCcCeeEEEEeC
Q 018437          275 GHKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       275 ~hK~l~-~P~g~g~l~~~~  292 (356)
                      .+|+++ .+.++|+++.++
T Consensus       228 ~sK~~g~~G~r~G~~~~~~  246 (391)
T 3h14_A          228 FSKYFSMTGWRVGWMVVPE  246 (391)
T ss_dssp             SSSTTCCTTSCCEEEECCG
T ss_pred             chhccCCccceeEEEEeCH
Confidence            999985 556789888643

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.88  E-value=8.1e-22  Score=187.97  Aligned_cols=201  Identities=12%  Similarity=-0.006  Sum_probs=157.6

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA-VGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +++.+.+++.+.++.....|....+..++++++.+++.+.+|.+.+.   . .+++|+||++++..++.++..+      
T Consensus        44 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~---~~~v~~~~g~~~a~~~~~~~~~~~------  114 (386)
T 1u08_A           44 GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDA---DSDITVTAGATEALYAAITALVRN------  114 (386)
T ss_dssp             CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCT---TTTEEEESSHHHHHHHHHHHHCCT------
T ss_pred             CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CCCEEEcCChHHHHHHHHHHhCCC------
Confidence            45788888888776433344444567899999999999988975321   3 5899999999999999887432      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHH
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKL  223 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~  223 (356)
                             +++|+++.++|+.+...++..|++++.+|++++++.+|+++|++++++++++|++++++||||.+.|   +++
T Consensus       115 -------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~  187 (386)
T 1u08_A          115 -------GDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAA  187 (386)
T ss_dssp             -------TCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             -------CCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHH
Confidence                   4789999999999999999999999999997645889999999999888999999999999999865   688


Q ss_pred             HHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-ccc-CCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFR-LPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       224 I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~-~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      |.++|+++      ++++|+|++|+.+...- .+...+ .+. ..+.|.+..++||+++ +.|  +|+++.++
T Consensus       188 i~~~~~~~------~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~  252 (386)
T 1u08_A          188 LWQAIAGH------EIFVISDEVYEHINFSQ-QGHASVLAHPQLRERAVAVSSFGKTYH-MTGWKVGYCVAPA  252 (386)
T ss_dssp             HHHHHTTS------CCEEEEECTTTTCBCCS-SCCCCGGGSHHHHTTEEEEEEHHHHTT-CGGGCCEEEECCH
T ss_pred             HHHHHHHc------CcEEEEEccccccccCC-CCCcChhcccCccCcEEEEecchhhcC-CcccceEEEEcCH
Confidence            99999999      99999999998754310 011111 121 2367899999999875 344  89998753

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.87  E-value=4.2e-21  Score=183.48  Aligned_cols=215  Identities=15%  Similarity=0.013  Sum_probs=164.4

Q ss_pred             CCCCcccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHH
Q 018437           54 GNPRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (356)
Q Consensus        54 ~~~~~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (356)
                      ++..++|....+. ++++.+.+++.+.+......|...++..++++++.+++.+.+|++.+.   ..+++|+||++++..
T Consensus        40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~---~~v~~~~g~t~al~~  116 (389)
T 1o4s_A           40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISP---DQVVVTNGAKQALFN  116 (389)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG---GGEEEESHHHHHHHH
T ss_pred             CCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCH---HHEEEecCHHHHHHH
Confidence            3333445444443 235788888888876543344444577899999999999888975311   358999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecC
Q 018437          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      ++.++..+             +++|+++.++|.++...++..|++++.+|+++ +++.+|+++|++++++++++|+++++
T Consensus       117 ~~~~l~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p  183 (389)
T 1o4s_A          117 AFMALLDP-------------GDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSP  183 (389)
T ss_dssp             HHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESS
T ss_pred             HHHHhCCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCC
Confidence            99887432             47899999999999999999999999999975 24789999999999888999999999


Q ss_pred             CCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcC--e
Q 018437          212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAG--V  285 (356)
Q Consensus       212 ~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g--~  285 (356)
                      +||||.+.|   +++|.++|+++      |+++++|++|+.+...- .......+. ..+.|.+..++||+++ +.|  +
T Consensus       184 ~nptG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~  255 (389)
T 1o4s_A          184 NNPTGVVYRREFLEGLVRLAKKR------NFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSHS-MTGWRV  255 (389)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTTT-CGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHc------CCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhcC-Ccccce
Confidence            999999966   99999999999      99999999998765410 000011221 2468999999999984 344  8


Q ss_pred             eEEEEeC
Q 018437          286 GWVVWRT  292 (356)
Q Consensus       286 g~l~~~~  292 (356)
                      |+++.++
T Consensus       256 G~l~~~~  262 (389)
T 1o4s_A          256 GYLISSE  262 (389)
T ss_dssp             EEEECCH
T ss_pred             EEEEeCH
Confidence            9998753

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.87  E-value=5e-21  Score=185.35  Aligned_cols=230  Identities=12%  Similarity=-0.031  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHHhhhcCCCCcccccccCCC-ChHHHHHHHHHHhcccC-CCcccCcchHHHHHHHHHHHHHHhCCCCCCCC
Q 018437           39 KEAAYQVINDELMLDGNPRLNLASFVTTW-MEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDK  116 (356)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~  116 (356)
                      ..++..........+++..++|..+.+.. +++.+.+++.+.+..+. ..|....+..++++++.+++.+.+|++.+.  
T Consensus        28 ~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~--  105 (437)
T 3g0t_A           28 IRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPA--  105 (437)
T ss_dssp             HHHHHHHHHHHHHHHTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--
T ss_pred             HHHHHHHHHHHHHhcCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCc--
Confidence            34444444433333444445555555443 45788888888776433 444444566889999999999888876422  


Q ss_pred             CCCeEEeCChhHHHHHHHHHHH--HHHHHHHHhcCCCCCCC--eEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCH
Q 018437          117 TAVGVGTVGSSEAIMLAGLAFK--RKWQQKRKEQGKPYDKP--NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNP  192 (356)
Q Consensus       117 ~~~~~~t~Ggt~a~~~al~~~~--~~~~~~~~~~g~~~~~~--~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~  192 (356)
                       ..+++|+||++++..++.++.  .+             ++  +|+++.++|.++...++..|++++.+|++++++.+|+
T Consensus       106 -~~i~~t~g~t~al~~~~~~l~~~~~-------------gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~  171 (437)
T 3g0t_A          106 -RACVPTVGSMQGCFVSFLVANRTHK-------------NREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLR  171 (437)
T ss_dssp             -GGEEEESHHHHHHHHHHHHHTTSCT-------------TCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHH
T ss_pred             -ccEEEeCCHHHHHHHHHHHHhcCCC-------------CCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCH
Confidence             458999999999999998875  32             46  8999999999999999999999999999755578999


Q ss_pred             HHHHHHH-hhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-------c
Q 018437          193 VKAVELV-DENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-------W  261 (356)
Q Consensus       193 ~~L~~~i-~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-------~  261 (356)
                      ++|++++ ++++++|++++|+||||.+.+   +++|.++|+++      |+++|+|++|+.+...  .....       .
T Consensus       172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~  243 (437)
T 3g0t_A          172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKH------DVIVIEDLAYFGMDFR--KDYSHPGEPLYQP  243 (437)
T ss_dssp             HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCCTT--SCCCSTTSSCCCC
T ss_pred             HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC------CcEEEEEcchhhcccC--CCcCcccccchhh
Confidence            9999999 678999999999999999976   77789999999      9999999999875542  11001       1


Q ss_pred             ccc-CCCceEEEEcCCcCCC-CCcCeeEEEEeC
Q 018437          262 DFR-LPLVKSINVSGHKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       262 ~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~  292 (356)
                      .+. ..+.+.+..++||+++ .+.++|+++.++
T Consensus       244 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~  276 (437)
T 3g0t_A          244 SVANYTDNYILALSSSKAFSYAGQRIGVLMISG  276 (437)
T ss_dssp             CGGGTCSCEEEEEESTTTTSCGGGCCEEEEECH
T ss_pred             ccCCCCCcEEEEEcCccCCCCccceeEEEEECH
Confidence            222 2466788889999975 456689998753

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.87  E-value=2e-21  Score=187.80  Aligned_cols=262  Identities=11%  Similarity=0.007  Sum_probs=181.1

Q ss_pred             ccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH
Q 018437           59 NLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        59 ~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (356)
                      +++...+. +.+|.+.+++.+.+......|...  ..++++++++++++.+|++.+   ...+++|+|+++|+..++.++
T Consensus        65 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~---~~~v~~~~g~~ea~~~a~~~~  139 (421)
T 3l8a_A           65 QMWVADMDFLPVPEIKEAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVV---KEDILFIDGVVPAISIALQAF  139 (421)
T ss_dssp             ECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCC---GGGEEEESCHHHHHHHHHHHH
T ss_pred             ecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCC---HHHEEEcCCHHHHHHHHHHHh
Confidence            44433333 345788898888776543344333  278889999999999996532   145899999999999999987


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec--CCccccCHHHHHHHHh-hCceEEEEecCCCc
Q 018437          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVD-ENTICVAAILGSTL  214 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~  214 (356)
                      ..+             +++|+++.++|..+...++..|.+++.+|++  +.++.+|+++|+++++ +++++|++++++||
T Consensus       140 ~~~-------------gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~np  206 (421)
T 3l8a_A          140 SEK-------------GDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNP  206 (421)
T ss_dssp             SCT-------------EEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTT
T ss_pred             cCC-------------CCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCC
Confidence            532             4689999999999999999999999999986  3347899999999998 68999999999999


Q ss_pred             cccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEcCCcCCC-CCcCeeEE
Q 018437          215 TGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHKYGL-VYAGVGWV  288 (356)
Q Consensus       215 tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK~l~-~P~g~g~l  288 (356)
                      +|.+   +++++|.++|+++      |+++|+|++|+++...--....-..+.  ..+.+.+..+++|+++ ...++|++
T Consensus       207 tG~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~  280 (421)
T 3l8a_A          207 GGRVWDNDDLIKIAELCKKH------GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFA  280 (421)
T ss_dssp             TTBCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEE
T ss_pred             CCCcCCHHHHHHHHHHHHHc------CCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeE
Confidence            9998   7899999999999      999999999987654210000001111  1245577788999985 45677999


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +.++++.. +.+........        .++.+....+++.++++. +.+.++++.++..++.++|
T Consensus       281 ~~~~~~l~-~~~~~~~~~~~--------~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l  336 (421)
T 3l8a_A          281 IIQNESLR-RKFQYRQLANN--------QHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLV  336 (421)
T ss_dssp             ECCSHHHH-HHHHHHHHHTT--------CSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCHHHH-HHHHHHHHhcc--------cCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHH
Confidence            88643332 11111000000        022333335555555553 5555666666666555544

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.87  E-value=1.8e-21  Score=185.58  Aligned_cols=230  Identities=8%  Similarity=-0.024  Sum_probs=170.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH--
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW--  167 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~--  167 (356)
                      ++...++.+++++.+++++|.+.      ..++|+|||+|+..++..+ .             .+++|+++.++|++.  
T Consensus        30 ~~~~~~~~~~~~~~l~~~~~~~~------~v~~~~sgt~a~~~~~~~~-~-------------~gd~vi~~~~~~~~~~~   89 (379)
T 3ke3_A           30 SKAFQEVMNDLLSNLKTVYNAEA------AVIIPGSGTYGMEAVARQL-T-------------IDEDCLIIRNGWFSYRW   89 (379)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSE------EEEEESCHHHHHHHHHHHH-C-------------TTCEEEEEECSHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCC------EEEEcCChhHHHHHHHHhC-C-------------CCCeEEEEeCCchhHHH
Confidence            55667888899999999999872      3788999999999876443 1             157899998888764  


Q ss_pred             HHHHHhhCC--eeEEEEecCC-------c-cccCHHHHHHHHh-hCceEEEEecCCCcccccCC---HHHHHHHHHHhhh
Q 018437          168 EKFARYFEV--ELKEVKLEEG-------Y-YVMNPVKAVELVD-ENTICVAAILGSTLTGEFED---VKLLHDLLTKKNE  233 (356)
Q Consensus       168 ~~~~~~~G~--~v~~v~~~~~-------~-~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~  233 (356)
                      ...++..|+  +++.++++..       . ..+|+++|++++. +++++|++++++|++|.+.|   +++|.++|+++  
T Consensus        90 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~--  167 (379)
T 3ke3_A           90 TQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV--  167 (379)
T ss_dssp             HHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHc--
Confidence            345555664  6788887531       1 2689999999996 48999999999999999999   99999999999  


Q ss_pred             ccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccccc--ccCCCCC--
Q 018437          234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF--HINYLGS--  309 (356)
Q Consensus       234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~--~~~~~~~--  309 (356)
                          |+++|+|++++ +..+       +++...++|.++.++||++++|.|+|+++++++ .. +.+..  ...+...  
T Consensus       168 ----~~~li~D~~~~-g~~~-------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~-~~l~~~~~~~~~~~~~  233 (379)
T 3ke3_A          168 ----GGLLVIDCIAS-GCVW-------LDMKELGIDVLISAPQKGWSSTPCAGLVMLSAA-AI-KKVESTESNCFSLDLK  233 (379)
T ss_dssp             ----TCEEEEECTTC-TTCC-------CCHHHHTCSEEEECTTTTTCSCCCEEEEEECHH-HH-HHHHTCCCSCSTTCHH
T ss_pred             ----CCEEEEEeccc-CCcc-------ccccccCCCEEEecchhhcCCCCceEEEEECHH-HH-HhhhcCCCCceeecHH
Confidence                99999999987 4332       233333789999999999999999999998753 21 11110  0111110  


Q ss_pred             ---------CCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          310 ---------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       310 ---------~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                               ........+|.+...++++.++++.+..+|++++.++..+++++|.
T Consensus       234 ~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~  288 (379)
T 3ke3_A          234 QWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVR  288 (379)
T ss_dssp             HHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence                     0000112357778778888899998888889999998888887763

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.87  E-value=1.9e-21  Score=182.82  Aligned_cols=195  Identities=11%  Similarity=-0.027  Sum_probs=152.7

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      .+++++.+.+++.+.+..    +....+...+++++++++++++|.++     ..+++|+||++|+..++.+++++    
T Consensus        23 ~~~~~~~v~~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~----   89 (359)
T 1svv_A           23 SVGMHPKILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPD-----ADVHFISGGTQTNLIACSLALRP----   89 (359)
T ss_dssp             SSCCCHHHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTT-----SEEEEESCHHHHHHHHHHHHCCT----
T ss_pred             cCCCCHHHHHHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCC-----ccEEEeCCchHHHHHHHHHHhCC----
Confidence            335668899998888753    22233556788899999999999765     34899999999999999987542    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHH--HHHhhCCeeEEEEecCCccccCHHHHHHHHhhC-------ceEEEEecCCCcc
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEK--FARYFEVELKEVKLEEGYYVMNPVKAVELVDEN-------TICVAAILGSTLT  215 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~--~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~-------~~~v~~~~~~~~t  215 (356)
                               +++|+++.++|+++..  .++..|++++.+|.+  ++.+|+++|+++++++       +++|+++++ |||
T Consensus        90 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~pt  157 (359)
T 1svv_A           90 ---------WEAVIATQLGHISTHETGAIEATGHKVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEV  157 (359)
T ss_dssp             ---------TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTT
T ss_pred             ---------CCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCC
Confidence                     4699999999999888  478889999999986  4899999999999876       889999988 689


Q ss_pred             cccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       216 G~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      |.+.|   +++|.++|+++      |+++|+|++|.++..... +.....+. ...+|++++++||++ +|.|+|+++++
T Consensus       158 G~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~  229 (359)
T 1svv_A          158 GTQYTKQELEDISASCKEH------GLYLFLDGARLASALSSP-VNDLTLADIARLTDMFYIGATKAG-GMFGEALIILN  229 (359)
T ss_dssp             SCCCCHHHHHHHHHHHHHH------TCEEEEECTTHHHHHTST-TCCCCHHHHHHHCSEEEEECTTTT-CSSCEEEEECS
T ss_pred             ceecCHHHHHHHHHHHHHh------CCEEEEEccchhhhhcCC-CcchhhhhhhhcCCEEEEecccCC-CCCceEEEEEc
Confidence            99988   89999999999      999999999965432211 10000000 025799999999985 68899999875


Q ss_pred             C
Q 018437          292 T  292 (356)
Q Consensus       292 ~  292 (356)
                      +
T Consensus       230 ~  230 (359)
T 1svv_A          230 D  230 (359)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.87  E-value=2.9e-21  Score=183.82  Aligned_cols=192  Identities=15%  Similarity=0.045  Sum_probs=149.5

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.+.. ...|....+..+++    +.+++++|+++     ..+++|+||++++..++.++..+       
T Consensus        39 ~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~----~~la~~~~~~~-----~~v~~~~g~~~a~~~~~~~~~~~-------  101 (381)
T 1v2d_A           39 PPPFLLEAVRRALGR-QDQYAPPAGLPALR----EALAEEFAVEP-----ESVVVTSGATEALYVLLQSLVGP-------  101 (381)
T ss_dssp             CCHHHHHHHHHHTTT-SCSCCCTTCCHHHH----HHHHHHHTSCG-----GGEEEESSHHHHHHHHHHHHCCT-------
T ss_pred             CCHHHHHHHHHHHHH-hcCCCCCCCCHHHH----HHHHHhcCCCh-----hhEEEcCChHHHHHHHHHHhCCC-------
Confidence            457888888888764 22333333444444    45777788875     24899999999999999887432       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec--CCccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VK  222 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~  222 (356)
                            +++|+++.++|.++...++..|++++.+|++  ++++.+|+++|++++++++++|++++++||||.+.|   ++
T Consensus       102 ------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~  175 (381)
T 1v2d_A          102 ------GDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELE  175 (381)
T ss_dssp             ------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             ------CCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHH
Confidence                  5789999999999999999999999999997  335899999999999888999999999999999865   89


Q ss_pred             HHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEcCCcCCCCC-cCeeEEEEeC
Q 018437          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       223 ~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~  292 (356)
                      +|.++|+++      |+++|+|++|+++...    ....++.  ..+.|.+..++||+++.| ..+|+++.++
T Consensus       176 ~i~~~~~~~------~~~li~De~~~~~~~g----~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~  238 (381)
T 1v2d_A          176 AIARLARAH------DLFLISDEVYDELYYG----ERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPK  238 (381)
T ss_dssp             HHHHHHHHT------TCEEEEECTTTTCBSS----SCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCT
T ss_pred             HHHHHHHHc------CCEEEEEcCccccccC----CCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCH
Confidence            999999999      9999999999875431    1111111  347899999999987423 3489998753

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.4e-21  Score=190.46  Aligned_cols=213  Identities=12%  Similarity=0.061  Sum_probs=164.7

Q ss_pred             CCCCcccccccCCC-ChHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHH
Q 018437           54 GNPRLNLASFVTTW-MEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (356)
Q Consensus        54 ~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (356)
                      ++..++|+.+.+.. +++.+.+++.+.+.. ....|....+..++++++.+++.+.+|.+.+.   ..+++|+||++|+.
T Consensus        56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~---~~v~~t~G~~~al~  132 (447)
T 3b46_A           56 GRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKA---ENVTVTTGANEGIL  132 (447)
T ss_dssp             TSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCG---GGEEEESHHHHHHH
T ss_pred             CCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEeCCHHHHHH
Confidence            33445666655543 357888988888764 23345455577889999999998888875421   35899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-----------ccccCHHHHHHHHh
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-----------YYVMNPVKAVELVD  200 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-----------~~~~d~~~L~~~i~  200 (356)
                      .++.++.++             +++|+++.++|..+...++..|++++.+|++++           ++.+|+++|+++++
T Consensus       133 ~~~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  199 (447)
T 3b46_A          133 SCLMGLLNA-------------GDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT  199 (447)
T ss_dssp             HHHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC
T ss_pred             HHHHHHcCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc
Confidence            999887542             579999999999999999999999999998753           47899999999998


Q ss_pred             hCceEEEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-ccc--cCCCceEEEEc
Q 018437          201 ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF--RLPLVKSINVS  274 (356)
Q Consensus       201 ~~~~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~--~~~~~Ds~~~~  274 (356)
                      +++++|++++|+||||.+   +++++|.++|+++      ++++++|++|+.+...  .+... ..+  ...+.|.+..+
T Consensus       200 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~i~S  271 (447)
T 3b46_A          200 SKTKAVIINTPHNPIGKVFTREELTTLGNICVKH------NVVIISDEVYEHLYFT--DSFTRIATLSPEIGQLTLTVGS  271 (447)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCS--SCCCCGGGSCHHHHTTEEEEEE
T ss_pred             cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc------CcEEEEeccchhcccC--CCCcCHHHcCCCCCCcEEEEec
Confidence            889999999999999998   4689999999999      9999999999875541  11111 111  12357888999


Q ss_pred             CCcCCC-CCcCeeEEEE
Q 018437          275 GHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       275 ~hK~l~-~P~g~g~l~~  290 (356)
                      +||+++ ..+.+|+++.
T Consensus       272 ~sK~~~~~G~riG~~~~  288 (447)
T 3b46_A          272 AGKSFAATGWRIGWVLS  288 (447)
T ss_dssp             HHHHTTCTTSCCEEEEC
T ss_pred             CchhcCCcchhhEEEEe
Confidence            999875 3455999987

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.87  E-value=4.7e-21  Score=185.29  Aligned_cols=201  Identities=13%  Similarity=0.080  Sum_probs=157.4

Q ss_pred             ChHHHHHHHHHHhcc---cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINK---NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA-VGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~---~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      +++.+.+++.+.++.   ....|....+..++++++.+++.+.+|.+.+.   . .+++|+||++|+..++.++..+   
T Consensus        51 ~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~---~~~v~~~~g~~~a~~~~~~~~~~~---  124 (429)
T 1yiz_A           51 APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINP---MTEVLVTVGAYEALYATIQGHVDE---  124 (429)
T ss_dssp             CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCT---TTSEEEESHHHHHHHHHHHHHCCT---
T ss_pred             CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCC---cCCEEEecChHHHHHHHHHHhcCC---
Confidence            457888888887764   22334444567889999999999988965321   3 5899999999999999887432   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC---------ccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                                +++|+++.++|..+...++..|++++.+|++.+         ++.+|+++|++++++++++|++++++||
T Consensus       125 ----------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~np  194 (429)
T 1yiz_A          125 ----------GDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNP  194 (429)
T ss_dssp             ----------TCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred             ----------CCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCC
Confidence                      478999999999999999999999999999764         4789999999999888999999999999


Q ss_pred             ccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-ccc-CCCceEEEEcCCcCCCCCcC--eeE
Q 018437          215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFR-LPLVKSINVSGHKYGLVYAG--VGW  287 (356)
Q Consensus       215 tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~-~~~~Ds~~~~~hK~l~~P~g--~g~  287 (356)
                      ||.+.+   +++|.++|+++      |+++|+|++|+++...- .+...+ .+. ..+.|.+..++||+++ +.|  +|+
T Consensus       195 tG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~  266 (429)
T 1yiz_A          195 LGKVMDRAELEVVANLCKKW------NVLCVSDEVYEHMVFEP-FEHIRICTLPGMWERTITIGSAGKTFS-LTGWKIGW  266 (429)
T ss_dssp             TCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCTT-SCCCCGGGSTTTGGGEEEEEEHHHHHT-CGGGCCEE
T ss_pred             CCccCCHHHHHHHHHHHHHc------CcEEEEeccccccccCC-CCCcChhhccCCcCceEEEecchhccC-CCCcceEE
Confidence            999974   89999999999      99999999998754310 011111 121 2467899999999874 445  899


Q ss_pred             EEEeC
Q 018437          288 VVWRT  292 (356)
Q Consensus       288 l~~~~  292 (356)
                      ++.++
T Consensus       267 ~~~~~  271 (429)
T 1yiz_A          267 AYGPE  271 (429)
T ss_dssp             EESCH
T ss_pred             EEeCH
Confidence            98753

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.86  E-value=9.5e-21  Score=182.34  Aligned_cols=256  Identities=12%  Similarity=0.047  Sum_probs=176.5

Q ss_pred             CChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHH------hCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHL------FNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l------~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      ++++.+.+++.+.+... ...|....+..++++++.+++.+.      .|++.+   ...+++|+||++++..++.++.+
T Consensus        50 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~---~~~v~~~~g~~~al~~~~~~l~~  126 (416)
T 1bw0_A           50 LTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV---KDNVVLCSGGSHGILMAITAICD  126 (416)
T ss_dssp             CCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC---GGGEEEESHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC---cceEEEeCChHHHHHHHHHHhCC
Confidence            45678888888777543 223444456778888877777742      233221   13589999999999999988743


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEecCCCccccc
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEF  218 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~  218 (356)
                      +             +++|+++.++|.++...++..|++++.+|++++ ++.+|+++|++++++++++|++++|+||||.+
T Consensus       127 ~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~  193 (416)
T 1bw0_A          127 A-------------GDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSN  193 (416)
T ss_dssp             T-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             C-------------CCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcc
Confidence            2             578999999999999999999999999998653 37899999999998888999999999999999


Q ss_pred             CC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCC----Cccccc---CCCceEEEEcCCcCCCCC-cCeeE
Q 018437          219 ED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD----LEWDFR---LPLVKSINVSGHKYGLVY-AGVGW  287 (356)
Q Consensus       219 ~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~----~~~~~~---~~~~Ds~~~~~hK~l~~P-~g~g~  287 (356)
                      .|   +++|.++|+++      ++++|+|++|+.+...   ..    ....+.   ....+.+..+++|+++.| ..+|+
T Consensus       194 ~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~  264 (416)
T 1bw0_A          194 FSRKHVEDIVRLAEEL------RLPLFSDEIYAGMVFK---GKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGW  264 (416)
T ss_dssp             CCHHHHHHHHHHHHHH------TCCEEEECTTTTCBCC---SSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEE
T ss_pred             cCHHHHHHHHHHHHHc------CCEEEEEccccccccC---CCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEE
Confidence            88   99999999999      9999999999875431   11    111121   112245566899996544 46899


Q ss_pred             EEEeCC-CCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          288 VVWRTK-DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       288 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ++.+++ +.. +.+.........      ..++.+....+++..+|+....+++++..++..+++++|
T Consensus       265 ~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  325 (416)
T 1bw0_A          265 LLYVDPHGNG-PSFLEGLKRVGM------LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYL  325 (416)
T ss_dssp             EEEECTTCSC-HHHHHHHHHHHH------HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeCchhhH-HHHHHHHHHHhc------cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            998764 333 221100000000      012333444555556666556777777777766665554

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.86  E-value=2.2e-20  Score=178.29  Aligned_cols=210  Identities=12%  Similarity=0.062  Sum_probs=160.4

Q ss_pred             CCcccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           56 PRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        56 ~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      ..++|..+.+.. +++.+.+++.+.+......|....+..++++++.+++.+.+|++.+.   ..+++|+||++++.+++
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~g~~~al~~~~  108 (385)
T 1b5p_A           32 DLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTP---EETIVTVGGSQALFNLF  108 (385)
T ss_dssp             CCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCG---GGEEEESHHHHHHHHHH
T ss_pred             CEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh---HHEEEcCChHHHHHHHH
Confidence            334555555543 34678888877765433344444567899999999999888875421   35899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      .++.++             +++|+++.++|..+...++..|++++.+|+++ +++.+|+++|++++++++++|++++|+|
T Consensus       109 ~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~N  175 (385)
T 1b5p_A          109 QAILDP-------------GDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNN  175 (385)
T ss_dssp             HHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCT
T ss_pred             HHhcCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCC
Confidence            887532             57899999999999999999999999999975 3478999999999988899999999999


Q ss_pred             cccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C-CCceEEEEcCCcCCCCC-cCeeE
Q 018437          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L-PLVKSINVSGHKYGLVY-AGVGW  287 (356)
Q Consensus       214 ~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~-~~~Ds~~~~~hK~l~~P-~g~g~  287 (356)
                      |||.+.+   +++|.++|+++      ++++++|++|+.+...   + ....+. . +..+.+..+++|+++.| ..+|+
T Consensus       176 PtG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---~-~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~  245 (385)
T 1b5p_A          176 PTGAVYPKEVLEALARLAVEH------DFYLVSDEIYEHLLYE---G-EHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGY  245 (385)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBSS---S-CCCCGGGTCTTTEEEEEESTTTTTCGGGCCEE
T ss_pred             CCCCCcCHHHHHHHHHHHHHc------CCEEEEEccchhcccC---C-CCCCHHHcCCCCEEEEEechhhcCCcccceEE
Confidence            9999855   89999999999      9999999999875441   1 111111 1 14567777899987432 34899


Q ss_pred             EEEe
Q 018437          288 VVWR  291 (356)
Q Consensus       288 l~~~  291 (356)
                      ++.+
T Consensus       246 ~~~~  249 (385)
T 1b5p_A          246 ACGP  249 (385)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9874

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.86  E-value=2.9e-21  Score=185.88  Aligned_cols=207  Identities=15%  Similarity=0.042  Sum_probs=158.7

Q ss_pred             ccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH
Q 018437           59 NLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        59 ~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (356)
                      +|..+.+. ++++.+.+++ +.+......|....+..++++++.+++.+.+|.+.+.   ..+++|+||++|+..++.++
T Consensus        47 ~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~t~a~~~~~~~~  122 (409)
T 2gb3_A           47 HLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKP---ENVLVTNGGSEAILFSFAVI  122 (409)
T ss_dssp             ECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG---GGEEEESHHHHHHHHHHHHH
T ss_pred             eccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCH---HHEEEeCCHHHHHHHHHHHh
Confidence            44444443 2346788888 8776544445455567899999999999888865422   35899999999999999887


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      ..+             +++|+++.++|.++...++..|++++.+|+++ +++.+ +++|++++++++++|++++++||||
T Consensus       123 ~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~nptG  188 (409)
T 2gb3_A          123 ANP-------------GDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTG  188 (409)
T ss_dssp             CCT-------------TCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTTC
T ss_pred             CCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCCC
Confidence            432             57899999999999999999999999999975 33566 8999999988899999999999999


Q ss_pred             ccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCC-cCeeEEEEe
Q 018437          217 EFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVY-AGVGWVVWR  291 (356)
Q Consensus       217 ~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P-~g~g~l~~~  291 (356)
                      .+.   ++++|.++|+++      |+++|+|++|+++...  ...... +. ..+.|.+..++||+++.| ..+|+++.+
T Consensus       189 ~~~~~~~l~~i~~~~~~~------~~~li~Dea~~~~~~~--~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~  259 (409)
T 2gb3_A          189 VVYGKDEMRYLVEIAERH------GLFLIVDEVYSEIVFR--GEFASA-LSIESDKVVVIDSVSKKFSACGARVGCLITR  259 (409)
T ss_dssp             CCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCS--SCCCCG-GGSCCTTEEEEEESTTTTTCGGGCCEEEECS
T ss_pred             CCcCHHHHHHHHHHHHHc------CCEEEEECcccccccC--CCCCCc-cccCCCCEEEEecchhccCCccceEEEEEEC
Confidence            984   589999999999      9999999999876541  111111 22 246799999999998422 348999876


Q ss_pred             C
Q 018437          292 T  292 (356)
Q Consensus       292 ~  292 (356)
                      +
T Consensus       260 ~  260 (409)
T 2gb3_A          260 N  260 (409)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.86  E-value=9.7e-21  Score=179.46  Aligned_cols=207  Identities=13%  Similarity=0.100  Sum_probs=158.8

Q ss_pred             CCCCcccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHH
Q 018437           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (356)
Q Consensus        54 ~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (356)
                      ++..++|..+.++. +++.+.+++.+.+......|....+..++++++.+++.+.+|++.+.   ..+++|+||++++..
T Consensus        28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~~~a~~~  104 (370)
T 2z61_A           28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIP---DNIIITGGSSLGLFF  104 (370)
T ss_dssp             TCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCG---GGEEEESSHHHHHHH
T ss_pred             CCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCCh---hhEEECCChHHHHHH
Confidence            33444455554443 35788888887776433344445567889999999999888865422   458999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCC
Q 018437          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS  212 (356)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (356)
                      ++.++.++             +++|+++.++|.++...++..|++++.+|       +|+++|++++++++++|++++|+
T Consensus       105 ~~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-------~d~~~l~~~l~~~~~~v~~~~p~  164 (370)
T 2z61_A          105 ALSSIIDD-------------GDEVLIQNPCYPCYKNFIRFLGAKPVFCD-------FTVESLEEALSDKTKAIIINSPS  164 (370)
T ss_dssp             HHHHHCCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEEC-------SSHHHHHHHCCSSEEEEEEESSC
T ss_pred             HHHHhcCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEeC-------CCHHHHHHhcccCceEEEEcCCC
Confidence            99887432             47899999999999999999999988887       68999999998888999999999


Q ss_pred             CcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcC--eeEEE
Q 018437          213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAG--VGWVV  289 (356)
Q Consensus       213 ~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g--~g~l~  289 (356)
                      ||||.+.|++ |.++|+++      ++++++|++|+.+...- .+.....+. ..+.|.+..++||+++ +.|  +|+++
T Consensus       165 nptG~~~~~~-l~~~~~~~------~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~  235 (370)
T 2z61_A          165 NPLGEVIDRE-IYEFAYEN------IPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYA-MTGWRIGYVI  235 (370)
T ss_dssp             TTTCCCCCHH-HHHHHHHH------CSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTT-CGGGCCEEEE
T ss_pred             CCcCcccCHH-HHHHHHHc------CCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccC-CccceEEEEE
Confidence            9999999999 99999999      99999999998765410 000011221 2467899999999984 444  89988


Q ss_pred             EeC
Q 018437          290 WRT  292 (356)
Q Consensus       290 ~~~  292 (356)
                      .++
T Consensus       236 ~~~  238 (370)
T 2z61_A          236 SND  238 (370)
T ss_dssp             CCH
T ss_pred             ECH
Confidence            754

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.86  E-value=8.4e-21  Score=178.57  Aligned_cols=200  Identities=17%  Similarity=0.083  Sum_probs=153.9

Q ss_pred             cccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|....+. ++++.+.+++.+.+... ..| ..+    ...++++++++++|+++     ..+++|+||++++..++.+
T Consensus        19 i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~y-~~~----~~~~l~~~la~~~~~~~-----~~i~~~~g~~~a~~~~~~~   87 (354)
T 3ly1_A           19 IRINFNENPLGMSPKAQAAARDAVVKA-NRY-AKN----EILMLGNKLAAHHQVEA-----PSILLTAGSSEGIRAAIEA   87 (354)
T ss_dssp             EECSSCCCSSCCCHHHHHHHHHTGGGT-TSC-CHH----HHHHHHHHHHHHTTSCG-----GGEEEESHHHHHHHHHHHH
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHhhC-cCC-CCC----chHHHHHHHHHHhCCCh-----HHEEEeCChHHHHHHHHHH
Confidence            344444333 35678999998877642 222 112    23467778999999875     3489999999999999988


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh--hCceEEEEecCCCc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAILGSTL  214 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~~~~v~~~~~~~~  214 (356)
                      +.++             +++|+++.++|.++...++..|++++.+|.+++ +.+|+++|+++++  +++++|++++++||
T Consensus        88 l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~v~l~~p~np  153 (354)
T 3ly1_A           88 YASL-------------EAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDN-WAFDIEGLKAAVAAYSGPSIVYLVNPNNP  153 (354)
T ss_dssp             HCCT-------------TCEEEEESSSCTHHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHHHTCSSCEEEEEESSCTT
T ss_pred             HhCC-------------CCeEEECCCCchHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHHHhccCCCCCEEEEeCCCCC
Confidence            7432             578999999999999999999999999999864 8999999999998  78999999999999


Q ss_pred             ccccCCHHHHHHHHHH--hhhccCCCCcEEEecccccccccccCCC--Ccccc-cCC-CceEEEEcCCcCCC-CCcCeeE
Q 018437          215 TGEFEDVKLLHDLLTK--KNEETGWDTPIHVDAASGGFIAPFLYPD--LEWDF-RLP-LVKSINVSGHKYGL-VYAGVGW  287 (356)
Q Consensus       215 tG~~~~i~~I~~i~~~--~~~~~~~~~~l~vD~a~~~~~~~~~~~~--~~~~~-~~~-~~Ds~~~~~hK~l~-~P~g~g~  287 (356)
                      ||.+.|++++.++++.  +      ++++|+|++|+.+...   ..  ..... ... ..+.+..++||+++ .+.++|+
T Consensus       154 tG~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~  224 (354)
T 3ly1_A          154 TGTITPADVIEPWIASKPA------NTMFIVDEAYAEFVND---PRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGY  224 (354)
T ss_dssp             TCCCCCHHHHHHHHHTCCT------TEEEEEECTTGGGCCC---TTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEE
T ss_pred             cCCCcCHHHHHHHHHhCCC------CeEEEEeccHHHhccc---cccCCHHHHhhhcCCCEEEEeeChhhccChhhhhee
Confidence            9999999999998888  7      9999999999875441   11  11111 122 45677889999985 5567898


Q ss_pred             EEEe
Q 018437          288 VVWR  291 (356)
Q Consensus       288 l~~~  291 (356)
                      ++..
T Consensus       225 ~~~~  228 (354)
T 3ly1_A          225 AVAH  228 (354)
T ss_dssp             EECC
T ss_pred             eecC
Confidence            8863

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.86  E-value=8.9e-21  Score=183.67  Aligned_cols=261  Identities=15%  Similarity=0.062  Sum_probs=179.0

Q ss_pred             CcccccccCC-----CChHHHHHHHHHHhcccC-CCcccCcchHHHHHHHHHHHHHHhC-----CCCCCCCCCCeEEeCC
Q 018437           57 RLNLASFVTT-----WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFN-----TPVADDKTAVGVGTVG  125 (356)
Q Consensus        57 ~~~l~~~~~~-----~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g-----~~~~~~~~~~~~~t~G  125 (356)
                      .++|+.+.+.     ++++.+.+++.+.+.... ..|....+..++++.    ++++++     ++.     ..+++|+|
T Consensus        56 ~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~----la~~~~~~~~~~~~-----~~v~~t~g  126 (427)
T 3dyd_A           56 MISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREE----IASYYHCPEAPLEA-----KDVILTSG  126 (427)
T ss_dssp             CEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHH----HHHHHCBTTBCCCG-----GGEEEESS
T ss_pred             EEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHH----HHHHHhhcCCCCCh-----HHEEEecC
Confidence            3567766654     456788999888776532 234444566666666    555555     333     35899999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCce
Q 018437          126 SSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTI  204 (356)
Q Consensus       126 gt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~  204 (356)
                      |++|+..++.++.++             +++|+++.++|..+...++..|++++.+|+++ +++.+|+++|+++++++++
T Consensus       127 ~t~al~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  193 (427)
T 3dyd_A          127 CSQAIDLCLAVLANP-------------GQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTA  193 (427)
T ss_dssp             HHHHHHHHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEE
T ss_pred             cHHHHHHHHHHhcCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCC
Confidence            999999999887542             57899999999999999999999999999864 3478999999999998899


Q ss_pred             EEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCce-EEEEcCCcC
Q 018437          205 CVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVK-SINVSGHKY  278 (356)
Q Consensus       205 ~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~D-s~~~~~hK~  278 (356)
                      +|++++|+||||.+.|   +++|.++|+++      ++++++|++|+++...   ......+.  ....+ .+..+++|.
T Consensus       194 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~------~~~~i~Deay~~~~~~---g~~~~~~~~~~~~~~vi~~~S~sK~  264 (427)
T 3dyd_A          194 CLIVNNPSNPCGSVFSKRHLQKILAVAARQ------CVPILADEIYGDMVFS---DCKYEPLATLSTDVPILSCGGLAKR  264 (427)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTTTCBCS---SCCCCCGGGGCSSCCEEEEEESTTT
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEcCchhhccC---CCcCccHHHhCCCCcEEEEeecccc
Confidence            9999999999999988   99999999999      9999999999876541   11111221  11223 344589997


Q ss_pred             -CCCCcCeeEEEEeCCCCC-ccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          279 -GLVYAGVGWVVWRTKDDL-PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       279 -l~~P~g~g~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                       +.....+|+++++++... ...+.........      ...+.+.....++..+|+....+.++++.++..+++++|
T Consensus       265 ~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l  336 (427)
T 3dyd_A          265 WLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQ------RILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLC  336 (427)
T ss_dssp             SSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH------HHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCcceEEEEecCcchhhHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence             444456899998764211 0111000000000      012333444556666676666677777777666665554

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.86  E-value=1.7e-20  Score=180.51  Aligned_cols=218  Identities=11%  Similarity=0.002  Sum_probs=158.8

Q ss_pred             cCCCCcccccccCCC-ChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHH
Q 018437           53 DGNPRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        53 ~~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (356)
                      +++..++|..+.+.. +++.+.+++.+.+... ...|....+..++++++.+++.+.+|.+.+.  ...+++|+||++|+
T Consensus        35 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~--~~~v~~t~g~~~a~  112 (412)
T 2x5d_A           35 RGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDP--ESEAIVTIGSKEGL  112 (412)
T ss_dssp             TTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCT--TTSEEEESCHHHHH
T ss_pred             cCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CcCEEEcCChHHHH
Confidence            444444555555443 4578888888777543 2234445567889999888888888975310  02489999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEe
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      ..++.++..+             +++|+++.++|..+...++..|++++.+|++++ ++.+|+++|++++++++++|+++
T Consensus       113 ~~~~~~~~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~  179 (412)
T 2x5d_A          113 AHLMLATLDH-------------GDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILG  179 (412)
T ss_dssp             HHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEE
T ss_pred             HHHHHHhCCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEEC
Confidence            9999887432             478999999999999999999999999999764 46789999999998889999999


Q ss_pred             cCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCC-CCcC
Q 018437          210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAG  284 (356)
Q Consensus       210 ~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~-~P~g  284 (356)
                      +|+||||.+.+   +++|.++|+++      ++++|+|++|+.+...--.......+. ..+.|.+..++||+++ ....
T Consensus       180 ~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  253 (412)
T 2x5d_A          180 FPSNPTAQCVELDFFERVVALAKQY------DVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWR  253 (412)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSC
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccc
Confidence            99999999865   68899999999      999999999987653100000011111 1357888999999985 3346


Q ss_pred             eeEEEEe
Q 018437          285 VGWVVWR  291 (356)
Q Consensus       285 ~g~l~~~  291 (356)
                      +|+++.+
T Consensus       254 ~G~~~~~  260 (412)
T 2x5d_A          254 IGFMVGN  260 (412)
T ss_dssp             CEEEEEC
T ss_pred             eEEEEcC
Confidence            8999874

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.86  E-value=2.6e-21  Score=185.22  Aligned_cols=190  Identities=10%  Similarity=-0.044  Sum_probs=148.3

Q ss_pred             ChHHHHHHHHHHhcccCCC---cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVD---MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~---~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      +++.+.+++.+.+......   +....+...+.+++++++++++|.+.       +++|+||++|+..++.++.++    
T Consensus        58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------v~~~~ggt~a~~~~~~~~~~~----  126 (398)
T 3a2b_A           58 TDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEA-------AILFSTGFQSNLGPLSCLMGR----  126 (398)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHSSCT----
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC----
Confidence            4577888887776542222   22223556788899999999999753       899999999999999887432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh----CceEEEEecCCCcccccCC
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFED  220 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~  220 (356)
                               +++|+++.++|.++..+++..|++++.+|.      +|+++|++++++    ++++|++++++||||.+.|
T Consensus       127 ---------gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~------~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~  191 (398)
T 3a2b_A          127 ---------NDYILLDERDHASIIDGSRLSFSKVIKYGH------NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN  191 (398)
T ss_dssp             ---------TCEEEEETTCCHHHHHHHHHSSSEEEEECT------TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC
T ss_pred             ---------CCEEEECCccCHHHHHHHHHcCCceEEeCC------CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC
Confidence                     578999999999999999999999988875      588999999987    7899999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc-cC-CCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RL-PLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~-~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +++|.++|+++      ++++|+|++|+.+..... ....... .. +++|.++.++||+++ |.| |+++.++
T Consensus       192 ~~~l~~~~~~~------~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~  256 (398)
T 3a2b_A          192 LPELTSIANEF------DAAVMVDDAHSLGVIGHK-GAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGDA  256 (398)
T ss_dssp             HHHHHHHHHHH------TCEEEEECTTTTTTSSGG-GCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEECH
T ss_pred             HHHHHHHHHHc------CcEEEEECCCcccccCCC-CCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeCH
Confidence            99999999999      999999999986543110 0001111 11 247999999999985 777 9988753

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.86  E-value=1.7e-21  Score=185.06  Aligned_cols=184  Identities=16%  Similarity=0.054  Sum_probs=139.7

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HHHHHHHHHh
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKE  147 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~  147 (356)
                      .+.+.+++.+.+..+.  +...+...    ++++.+++++|.+.       +++|+|||+|+..++.++ ..        
T Consensus        16 ~~~~~~a~~~~~~~~~--~~~~~~~~----~l~~~la~~~~~~~-------~i~~~sgt~al~~~l~~l~~~--------   74 (373)
T 3frk_A           16 EYEIKFKFEEIYKRNW--FILGDEDK----KFEQEFADYCNVNY-------CIGCGNGLDALHLILKGYDIG--------   74 (373)
T ss_dssp             HHHHHHHHHHHHHHTC--CSSSHHHH----HHHHHHHHHHTSSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred             CHHHHHHHHHHHHCCC--ccCCchHH----HHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHcCCC--------
Confidence            3567777777665443  23334444    45555888888863       799999999999998876 22        


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i  227 (356)
                           .+++|+++.++|.++...++..|++++.++++++++.+|+++|++++++++++|+   ++|++|.+.|+++|.++
T Consensus        75 -----~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l  146 (373)
T 3frk_A           75 -----FGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRI  146 (373)
T ss_dssp             -----TTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHH
T ss_pred             -----CcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHH
Confidence                 1579999999999999999999999999999865699999999999998888877   67899999999999999


Q ss_pred             HHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEc--CCcCCCCCcCeeEEEEeCC
Q 018437          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~--~hK~l~~P~g~g~l~~~~~  293 (356)
                      |+++      |+++|+|++|+.+..  .... .  . -...|.+++|  +||+++++...|+++.+++
T Consensus       147 ~~~~------~~~li~D~a~~~g~~--~~~~-~--~-~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~  202 (373)
T 3frk_A          147 AKKY------NLKLIEDAAQAHGSL--YKGM-K--V-GSLGDAAGFSFYPAKNLGSLGDGGAVVTNDK  202 (373)
T ss_dssp             HHHH------TCEEEEECTTCTTCE--ETTE-E--T-TSSSSEEEEECCTTSSSCCSSSCEEEEESCH
T ss_pred             HHHc------CCEEEEECCcccCCE--ECCE-e--c-cccccEEEEeCcCCCccCccceeEEEEeCCH
Confidence            9999      999999999986443  1111 1  1 1124676666  7799865344566666543

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.86  E-value=3.2e-21  Score=182.61  Aligned_cols=188  Identities=12%  Similarity=0.042  Sum_probs=146.2

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      .+++++.+.+++.+.+......+  .+    ...++++.+++++|.+.       +++|+||++|+..++.+++..    
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~--~~----~~~~l~~~la~~~~~~~-------v~~~~ggt~al~~~~~~~~~~----   70 (375)
T 2fnu_A            8 EPCLDKEDKKAVLEVLNSKQLTQ--GK----RSLLFEEALCEFLGVKH-------ALVFNSATSALLTLYRNFSEF----   70 (375)
T ss_dssp             CCCCCHHHHHHHHHHHTSSCCSS--SH----HHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHSSCC----
T ss_pred             CCCCCHHHHHHHHHHHHcCcccC--Ch----HHHHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHhccc----
Confidence            34566788999988876433222  22    23466677899998863       899999999999999887210    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHH
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLL  224 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I  224 (356)
                            -..+++|+++.++|+++...+...|++++.++++++ +.+|+++|++++++++++|+++++   +|.+.|+++|
T Consensus        71 ------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i  140 (375)
T 2fnu_A           71 ------SADRNEIITTPISFVATANMLLESGYTPVFAGIKND-GNIDELALEKLINERTKAIVSVDY---AGKSVEVESV  140 (375)
T ss_dssp             ------CTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTT-SSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHH
T ss_pred             ------CCCCCEEEECCCccHhHHHHHHHCCCEEEEeccCCC-CCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHH
Confidence                  001469999999999999999999999999999875 689999999999888888887766   8999999999


Q ss_pred             HHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          225 HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       225 ~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      .++|+++      |+++|+|++|+.+..+  ..   ..+. ...++.+++++||++ +| |+|.+++++
T Consensus       141 ~~l~~~~------~~~li~D~a~~~~~~~--~~---~~~~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~  196 (375)
T 2fnu_A          141 QKLCKKH------SLSFLSDSSHALGSEY--QN---KKVGGFALASVFSFHAIKPI-TT-AEGGAVVTN  196 (375)
T ss_dssp             HHHHHHH------TCEEEEECTTCTTCEE--TT---EETTSSSSEEEEECCTTSSS-CC-SSCEEEEES
T ss_pred             HHHHHHc------CCEEEEECccccCCeE--CC---eeccccCCeEEEeCCCCCCc-cc-cCceEEEeC
Confidence            9999999      9999999999865542  11   0111 224778888899998 66 889988854

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.86  E-value=6.7e-21  Score=182.27  Aligned_cols=200  Identities=14%  Similarity=0.091  Sum_probs=153.4

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      ++++.+.+++.+.+......|...  ..++++++.+++++.+|++.+.   ..+++|+||++|+..++.++..+      
T Consensus        44 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~---~~v~~t~g~~~a~~~~~~~l~~~------  112 (399)
T 1c7n_A           44 KNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQT---DWIINTAGVVPAVFNAVREFTKP------  112 (399)
T ss_dssp             CCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCG---GGEEEESSHHHHHHHHHHHHCCT------
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCCh---hhEEEcCCHHHHHHHHHHHhcCC------
Confidence            345788888887775433333332  6788889989998888854321   35899999999999999877432      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec-CC-ccccCHHHHHHHHh-hCceEEEEecCCCcccccCC---
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EG-YYVMNPVKAVELVD-ENTICVAAILGSTLTGEFED---  220 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~-~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~---  220 (356)
                             +++|+++.++|.++...++..|++++.+|++ ++ ++.+|+++|+++++ +++++|++++++||||.+.|   
T Consensus       113 -------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~  185 (399)
T 1c7n_A          113 -------GDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDE  185 (399)
T ss_dssp             -------TCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHH
T ss_pred             -------CCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHH
Confidence                   4789999999999999999999999999985 32 36799999999998 67899999999999999988   


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C----CCceEEEEcCCcCCC-CCcCeeEEEEeCC
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L----PLVKSINVSGHKYGL-VYAGVGWVVWRTK  293 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~----~~~Ds~~~~~hK~l~-~P~g~g~l~~~~~  293 (356)
                      +++|.++|+++      ++++|+|++|+++...   ......+. .    ...+.+..+.+|+++ ....+|+++++++
T Consensus       186 l~~i~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~  255 (399)
T 1c7n_A          186 LQKIKDIVLKS------DLMLWSDEIHFDLIMP---GYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNP  255 (399)
T ss_dssp             HHHHHHHHHHS------SCEEEEECTTTTCBCT---TCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCH
T ss_pred             HHHHHHHHHHc------CCEEEEEccccccccC---CCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCH
Confidence            99999999999      9999999999875431   11111221 1    134567788999875 3345799987643

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.86  E-value=5.4e-21  Score=187.83  Aligned_cols=276  Identities=12%  Similarity=0.027  Sum_probs=165.0

Q ss_pred             HHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhcccC--CCcc-----cCcchHHHHHHHHHHHHHHhCCCCC
Q 018437           41 AAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNY--VDMD-----EYPVTTELQNRCVNMIAHLFNTPVA  113 (356)
Q Consensus        41 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~--~~~~-----~~~~~~~le~~~~~~la~l~g~~~~  113 (356)
                      ++.+.+.+...+..+ .+.|.. .++++++.|.+++.+.+.+..  +++.     ..+...++|+.+++++++++|++.+
T Consensus        41 ~~~~~~~~e~~rq~~-~i~lia-s~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~  118 (490)
T 2a7v_A           41 EMWELLQREKDRQCR-GLELIA-SENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA  118 (490)
T ss_dssp             HHHHHHHHHHHHHHH-SEECCT-TCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHHHc-CceEEC-CCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcc
Confidence            366665554443221 122222 344567899999987765332  2221     1123458898999999999999862


Q ss_pred             CCCCC-CeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH--------HHHhhCCeeE--EEE
Q 018437          114 DDKTA-VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK--------FARYFEVELK--EVK  182 (356)
Q Consensus       114 ~~~~~-~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~--------~~~~~G~~v~--~v~  182 (356)
                      +   . ..+++++||+||+.++.++.++             +++|+++.+.|.++..        .+...|..++  .++
T Consensus       119 ~---~~~~v~~~sGt~An~~al~al~~p-------------GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~  182 (490)
T 2a7v_A          119 Q---WGVNVQPYSGSPANLAVYTALLQP-------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYK  182 (490)
T ss_dssp             T---EEEECCCSSHHHHHHHHHHHHCCS-------------CEECCC-------------------------------CC
T ss_pred             c---CceEEeCCchHHHHHHHHHHHcCC-------------CCEecccCccccccccchhhhcchhHHHcCCeEEEEecc
Confidence            1   1 2356678999999999987543             5799999888754321        2345565444  444


Q ss_pred             ecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc
Q 018437          183 LEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW  261 (356)
Q Consensus       183 ~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~  261 (356)
                      ++++++.+|+++|++++.+ ++++|+++.++++  ...|+++|.++|+++      |+++|+|+|++.+...  .+..+.
T Consensus       183 vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~------g~~livD~Ah~~glv~--~g~~~~  252 (490)
T 2a7v_A          183 LNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEV------KAHLLADMAHISGLVA--AKVIPS  252 (490)
T ss_dssp             BCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHT------TCEEEEECGGGHHHHH--TTSSCC
T ss_pred             cccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHc------CCEEEEcccccccccc--CCcCCC
Confidence            5654689999999999964 7888877666654  577999999999999      9999999998654331  111111


Q ss_pred             cccCCCceEEEEcCCcCCCCCcCeeEEEEeCCC-------------CCccccccccCCCCCCCCCccccCCCChhHHHHH
Q 018437          262 DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD-------------DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQ  328 (356)
Q Consensus       262 ~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~  328 (356)
                      .+  .++|.++.++||++.+|.| |+++.+++.             .+.+.+  .. ...     ..++|+++...++++
T Consensus       253 ~~--~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i--~~-~~~-----~g~qggp~~~~iaAl  321 (490)
T 2a7v_A          253 PF--KHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRI--NF-AVF-----PSLQGGPHNHAIAAV  321 (490)
T ss_dssp             GG--GTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHH--HH-HHT-----TTTCCSCCHHHHHHH
T ss_pred             CC--CCCCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHHH--HH-Hhc-----ccCCCCchHHHHHHH
Confidence            22  3789999999999988987 888887631             011110  00 000     112345556556666


Q ss_pred             HHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          329 YYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       329 ~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      .+++...-.++++++.++..+++++|+
T Consensus       322 a~Al~~~~~~~~~~~~~~~~~na~~L~  348 (490)
T 2a7v_A          322 AVALKQACTPMFREYSLQVLKNARAMA  348 (490)
T ss_dssp             HHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            667766544555667777777666653

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.86  E-value=5.4e-22  Score=193.53  Aligned_cols=218  Identities=12%  Similarity=0.007  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhC
Q 018437           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFE  175 (356)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G  175 (356)
                      ...++++++++ +|.+.      ..++|+|+|+|+..++.++..+             +++|+++.++|.++..++...|
T Consensus        58 ~~~~~~~~la~-~g~~~------~v~~~~G~t~a~~~~~~a~~~~-------------gd~Vlv~~~~h~s~~~~~~~~G  117 (446)
T 2x3l_A           58 VILKSMKQVEK-HSDYD------GYFLVNGTTSGILSVIQSFSQK-------------KGDILMARNVHKSVLHALDISQ  117 (446)
T ss_dssp             HHHHHHHHHCS-CTTEE------EEEESSHHHHHHHHHHHTTTTS-------------SSCEEECTTCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHh-cCCCc------eEEEeCCHHHHHHHHHHHhcCC-------------CCEEEEecCccHHHHHHHHHcC
Confidence            34577788999 99862      3689999999999999887432             5789999999999999999999


Q ss_pred             CeeEEEEe--cCCc---cccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccc
Q 018437          176 VELKEVKL--EEGY---YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (356)
Q Consensus       176 ~~v~~v~~--~~~~---~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~  250 (356)
                      ++++.++.  +++.   +.+|+++|   +.+++++|++++ .|++|.+.|+++|.++|+++      ++++|+|+||++ 
T Consensus       118 ~~~~~v~~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~------~~~livDea~~~-  186 (446)
T 2x3l_A          118 QEGHFIETHQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQL------NIPVLIDEAHGA-  186 (446)
T ss_dssp             CCEEECEEEECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHT------TCCEEEECTTCT-
T ss_pred             CeEEEEeCeeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhc------CCeEEEcchhhh-
Confidence            99999998  5421   67899888   566789999999 55599999999999999999      999999999987 


Q ss_pred             cccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHH
Q 018437          251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY  330 (356)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~  330 (356)
                      ...|. +. +.+....++|.++.|+||++++|.|+|+++++++......+.......        ..+|.+....+++.+
T Consensus       187 ~~~f~-~~-~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~--------~~~s~~~~~~aal~~  256 (446)
T 2x3l_A          187 HFGLQ-GF-PDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYF--------QTSSPSYLIMASLES  256 (446)
T ss_dssp             TTTST-TS-CCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHH--------SCSSCCHHHHHHHHH
T ss_pred             hhccC-CC-CCChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHH--------cCCCchHHHHHHHHH
Confidence            33322 22 233322368999999999999999999999976522101111000000        124555655667777


Q ss_pred             HHHHhCHHHHHHHHHHHHhccCcc
Q 018437          331 QFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       331 ~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +++.+...|.+++.++..+++++|
T Consensus       257 a~~~l~~~g~~~~~~~~~~l~~~l  280 (446)
T 2x3l_A          257 AAQFYKTYDSTLFFAKRAQLIECL  280 (446)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHH
Confidence            777665555555666666666654

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.85  E-value=1.1e-20  Score=180.46  Aligned_cols=217  Identities=16%  Similarity=0.018  Sum_probs=162.0

Q ss_pred             CCCCcccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCC-CCCCCCC-CeEEeCChhHHH
Q 018437           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTA-VGVGTVGSSEAI  130 (356)
Q Consensus        54 ~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~-~~~~t~Ggt~a~  130 (356)
                      ++..++|..+.+.. +++.+.+++.+.+. ....|....+..++++++.+++++.+|.+ .+.   . .+++|+|+++++
T Consensus        29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~---~~~i~~t~g~~~al  104 (396)
T 3jtx_A           29 GMEAVPLHIGEPKHPTPKVITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRYDGLTVDA---DNEILPVLGSREAL  104 (396)
T ss_dssp             TCCCEECSCCSCCSCCCHHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCT---TTSEEEESSHHHHH
T ss_pred             CCCeEEeCCcCCCCCCCHHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC---CCeEEEcCCcHHHH
Confidence            44445565555443 45788898888775 33344444567889999999999999975 211   3 589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEec
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      ..++.++..+        |....+++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|++++
T Consensus       105 ~~~~~~~~~~--------g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~  176 (396)
T 3jtx_A          105 FSFVQTVLNP--------VSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCS  176 (396)
T ss_dssp             HHHHHHHCCC-----------CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEES
T ss_pred             HHHHHHHhCC--------CCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEEC
Confidence            9999887532        10000268999999999999999999999999999765578999999999999999999999


Q ss_pred             CCCcccccCCHHH---HHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc-------c-CCCceEEEEcCCcC-
Q 018437          211 GSTLTGEFEDVKL---LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-------R-LPLVKSINVSGHKY-  278 (356)
Q Consensus       211 ~~~~tG~~~~i~~---I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-------~-~~~~Ds~~~~~hK~-  278 (356)
                      |+||||.+.+.++   |.++|+++      ++++|+|++|+.+...   .......       . ..+.+.+..+++|. 
T Consensus       177 p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  247 (396)
T 3jtx_A          177 PNNPSGSVLDLDGWKEVFDLQDKY------GFIIASDECYSEIYFD---GNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS  247 (396)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHH------CCEEEEECTTTTCCST---TCCCCCHHHHHHHTTCCCTTEEEEEESTTTS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEccccccccC---CCCCchHHhhhhhcccccCcEEEEecccccc
Confidence            9999999976554   99999999      9999999999875441   1111111       0 14567888899995 


Q ss_pred             CCCCcCeeEEEEe
Q 018437          279 GLVYAGVGWVVWR  291 (356)
Q Consensus       279 l~~P~g~g~l~~~  291 (356)
                      +....++|+++..
T Consensus       248 ~~~G~r~G~~~~~  260 (396)
T 3jtx_A          248 NVPGLRSGFVAGD  260 (396)
T ss_dssp             SCGGGCCEEEEEC
T ss_pred             CCcccceEEEEeC
Confidence            4455678988763

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.85  E-value=9.1e-21  Score=179.73  Aligned_cols=212  Identities=9%  Similarity=-0.028  Sum_probs=158.9

Q ss_pred             cCCCCcccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHH
Q 018437           53 DGNPRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (356)
Q Consensus        53 ~~~~~~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (356)
                      +++..++|..+.+. ++++.+.+++.+.+......|.. .+ .++++++.+++.+.+|.+.+.   ..+++|+||++|+.
T Consensus        21 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~---~~i~~t~g~~~a~~   95 (377)
T 3fdb_A           21 YGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARP---EWIFPIPDVVRGLY   95 (377)
T ss_dssp             SCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCG---GGEEEESCHHHHHH
T ss_pred             cCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCH---HHEEEeCChHHHHH
Confidence            44444455555443 34578899988887653333433 34 678888888888888866422   45899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecC
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      .++.++.++             +++|+++.++|.++...++..|++++.+|++++   +|+++|++++++++++|++++|
T Consensus        96 ~~~~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~d~~~l~~~l~~~~~~v~i~~p  159 (377)
T 3fdb_A           96 IAIDHFTPA-------------QSKVIVPTPAYPPFFHLLSATQREGIFIDATGG---INLHDVEKGFQAGARSILLCNP  159 (377)
T ss_dssp             HHHHHHSCT-------------TCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS---CCHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHHhcCC-------------CCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC---CCHHHHHHHhccCCCEEEEeCC
Confidence            999887532             478999999999999999999999999999863   9999999999988999999999


Q ss_pred             CCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc---CCCceEEEEcCCcCCC-CCcC
Q 018437          212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR---LPLVKSINVSGHKYGL-VYAG  284 (356)
Q Consensus       212 ~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~---~~~~Ds~~~~~hK~l~-~P~g  284 (356)
                      +||||.+.|   +++|.++|+++      ++++|+|++|+.+...  .......+.   ....+.+..+.+|+++ ....
T Consensus       160 ~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r  231 (377)
T 3fdb_A          160 YNPLGMVFAPEWLNELCDLAHRY------DARVLVDEIHAPLVFD--GQHTVAAGVSDTAASVCITITAPSKAWNIAGLK  231 (377)
T ss_dssp             BTTTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGBSS--SCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHc------CCEEEEEcccchhhcC--CCCCcccHHHccCCCcEEEEEeChHhccCcchh
Confidence            999999964   67777889999      9999999999875441  101112221   1234467788999984 4456


Q ss_pred             eeEEEEeCC
Q 018437          285 VGWVVWRTK  293 (356)
Q Consensus       285 ~g~l~~~~~  293 (356)
                      +|++++.++
T Consensus       232 ~G~~~~~~~  240 (377)
T 3fdb_A          232 CAQIIFSNP  240 (377)
T ss_dssp             CEEEECCSH
T ss_pred             heEEEeCCH
Confidence            887776543

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.85  E-value=6.7e-20  Score=173.80  Aligned_cols=198  Identities=14%  Similarity=0.046  Sum_probs=153.6

Q ss_pred             CChHHHHHHHHHHhccc---CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      ++++.+.+++.+.+...   ...|..... .++++.+.+++.+.+|.+.+.   ..+++|+|+++++..++.++.++   
T Consensus        43 ~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~---~~v~~~~G~~~al~~~~~~l~~~---  115 (369)
T 3cq5_A           43 PPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTR---DNLWAANGSNEILQQLLQAFGGP---  115 (369)
T ss_dssp             CCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHHHHHHHHHHCST---
T ss_pred             CCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCCh---HhEEECCChHHHHHHHHHHhcCC---
Confidence            34577888887776542   233333223 688889888888887765321   35899999999999998877432   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHH
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK  222 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~  222 (356)
                                +++|+++.++|.++...++..|++++.+|.+++ +.+|+++|++++++ ++++|++++++||||.+.|++
T Consensus       116 ----------gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~  184 (369)
T 3cq5_A          116 ----------GRTALGFQPSYSMHPILAKGTHTEFIAVSRGAD-FRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLD  184 (369)
T ss_dssp             ----------TCEEEEEESSCTHHHHHHHHTTCEEEEEECCTT-SSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHH
T ss_pred             ----------CCEEEEcCCChHHHHHHHHHcCCEEEEecCCcC-CCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHH
Confidence                      578999999999999999999999999998754 79999999999987 899999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc-cCCC-ceEEEEcCCcCCCCC-cCeeEEEEeC
Q 018437          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPL-VKSINVSGHKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       223 ~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~-~Ds~~~~~hK~l~~P-~g~g~l~~~~  292 (356)
                      ++.++|+.+      ++++++|++|+.+..+   .. ...+ ...+ .+.+..++||+++.| ..+|+++.++
T Consensus       185 ~l~~l~~~~------~~~li~De~~~~~~~~---~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~  247 (369)
T 3cq5_A          185 DVERIINVA------PGIVIVDEAYAEFSPS---PS-ATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP  247 (369)
T ss_dssp             HHHHHHHHC------SSEEEEECTTGGGCCS---CC-GGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT
T ss_pred             HHHHHHHhC------CCEEEEECCchhhcCC---cc-hHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCH
Confidence            999999999      9999999999876531   11 1121 1123 567888999998533 4579998853

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.85  E-value=1.4e-20  Score=178.79  Aligned_cols=216  Identities=12%  Similarity=-0.051  Sum_probs=158.5

Q ss_pred             cCCCCcccccccCCC-ChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHH
Q 018437           53 DGNPRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        53 ~~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (356)
                      .++..++|..+.+.. +++.+.+++.+.+... ...|....+..++++++.+++.+.+|++.+.  ...+++|+|+++++
T Consensus        23 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~--~~~v~~~~g~~~a~  100 (376)
T 2dou_A           23 RGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDP--RREALALIGSQEGL  100 (376)
T ss_dssp             TTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCT--TTSEEEESSHHHHH
T ss_pred             cCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CccEEEcCCcHHHH
Confidence            344444555554443 4578889888877542 2233333466788888888888888986311  12589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEec
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      ..++.++.++             +++|+++.++|..+...++..|++++.+|+ ++++.+|+++|++++++++++|++++
T Consensus       101 ~~~~~~l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~v~l~~  166 (376)
T 2dou_A          101 AHLLLALTEP-------------EDLLLLPEVAYPSYFGAARVASLRTFLIPL-REDGLADLKAVPEGVWREAKVLLLNY  166 (376)
T ss_dssp             HHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHTTCEEEEECB-CTTSSBCGGGSCHHHHHHEEEEEECS
T ss_pred             HHHHHHhcCC-------------CCEEEECCCCcHhHHHHHHHcCCEEEEeeC-CCCCCCCHHHHHHhhccCceEEEECC
Confidence            9998877432             478999999999999999999999999998 44478999999999988889999999


Q ss_pred             CCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCC-CCcCe
Q 018437          211 GSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGV  285 (356)
Q Consensus       211 ~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~-~P~g~  285 (356)
                      |+||||.+.|   +++|.++|+++      ++++|+|++|+.+...- .+.....+. ..+.+.+..+++|+++ ....+
T Consensus       167 p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  239 (376)
T 2dou_A          167 PNNPTGAVADWGYFEEALGLARKH------GLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSYNLAGFRL  239 (376)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCC
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHc------CCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhcCChhhee
Confidence            9999999966   67889999999      99999999998765310 000011111 1245677788999875 33458


Q ss_pred             eEEEEe
Q 018437          286 GWVVWR  291 (356)
Q Consensus       286 g~l~~~  291 (356)
                      |+++.+
T Consensus       240 G~~~~~  245 (376)
T 2dou_A          240 GFALGS  245 (376)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            998764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.85  E-value=1.8e-20  Score=179.52  Aligned_cols=210  Identities=13%  Similarity=0.039  Sum_probs=161.7

Q ss_pred             cccccccCC--CChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           58 LNLASFVTT--WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        58 ~~l~~~~~~--~~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      ++|..+.+.  ++++.+.+++.+.+... ...|....+..++++++.+++++.+|.+.+.  ...+++|+||++|+..++
T Consensus        42 id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~--~~~i~~~~g~~~a~~~~~  119 (407)
T 3nra_A           42 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDA--RDGLIITPGTQGALFLAV  119 (407)
T ss_dssp             EETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCT--TTSEEEESHHHHHHHHHH
T ss_pred             eeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCCcHHHHHHHH
Confidence            455543333  44577888887776532 1134445577889999999999999986311  125899999999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec-----CCccccCHHHHHHHHhhCceEEEEe
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-----EGYYVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~-----~~~~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      .++..+             +++|+++.++|.++...++..|++++.+|++     ++++.+|+++|++++++++++|+++
T Consensus       120 ~~l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~  186 (407)
T 3nra_A          120 AATVAR-------------GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFS  186 (407)
T ss_dssp             HTTCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEE
T ss_pred             HHhCCC-------------CCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEc
Confidence            876432             5789999999999999999999999999983     2358999999999999889999999


Q ss_pred             cCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-----CCCceEEEEcCCcCCC-
Q 018437          210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-----LPLVKSINVSGHKYGL-  280 (356)
Q Consensus       210 ~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-----~~~~Ds~~~~~hK~l~-  280 (356)
                      +|+||||.+.|   +++|.++|+++      ++++|+|++|+.+...   ......+.     ....+.+..+++|+++ 
T Consensus       187 ~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~Dea~~~~~~~---g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~  257 (407)
T 3nra_A          187 NPNNPAGVVYSAEEIGQIAALAARY------GATVIADQLYSRLRYA---GASYTHLRAEAAVDAENVVTIMGPSKTESL  257 (407)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBCT---TCCCCCGGGCTTSCGGGEEEEECSSSTTCC
T ss_pred             CCCCCCCcccCHHHHHHHHHHHHHc------CCEEEEEccccccccC---CCCCCChhhcCcccCCcEEEEeCcccccCC
Confidence            99999999988   99999999999      9999999999876542   11111111     1345688889999986 


Q ss_pred             CCcCeeEEEEe
Q 018437          281 VYAGVGWVVWR  291 (356)
Q Consensus       281 ~P~g~g~l~~~  291 (356)
                      ...++|+++.+
T Consensus       258 ~G~r~G~~~~~  268 (407)
T 3nra_A          258 SGYRLGVAFGS  268 (407)
T ss_dssp             GGGCCEEEEEC
T ss_pred             CeeeEEEEEcC
Confidence            44678888764

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.85  E-value=2.8e-21  Score=181.57  Aligned_cols=198  Identities=15%  Similarity=0.120  Sum_probs=146.8

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      |.+..+.++++.+.+++.+.+......+    +...+.+++++++++++| +.     ..+++|+||++|+..++.++++
T Consensus        12 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~----~~~~~~~~l~~~la~~~g-~~-----~~v~~~~~gt~a~~~al~~~~~   81 (356)
T 1v72_A           12 FSSDNIAGASPEVAQALVKHSSGQAGPY----GTDELTAQVKRKFCEIFE-RD-----VEVFLVPTGTAANALCLSAMTP   81 (356)
T ss_dssp             CSCGGGCCCCHHHHHHHHHTTSSCCCST----TCSHHHHHHHHHHHHHHT-SC-----CEEEEESCHHHHHHHHHHTSCC
T ss_pred             eccCCccCCCHHHHHHHHhhccCccccc----ccchHHHHHHHHHHHHhC-CC-----CcEEEeCCccHHHHHHHHHhcC
Confidence            3333444566888888887653211111    224566788899999999 32     2379999999999999887643


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHH--HHhh--CCeeEEEEecCCccccCHHHHHH-HHhh-------CceEEE
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKF--ARYF--EVELKEVKLEEGYYVMNPVKAVE-LVDE-------NTICVA  207 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~--~~~~--G~~v~~v~~~~~~~~~d~~~L~~-~i~~-------~~~~v~  207 (356)
                      +             +++|+++.++|+++...  +...  |++++.+|.+  ++.+|+++|++ ++++       ++++|+
T Consensus        82 ~-------------gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~~~v~  146 (356)
T 1v72_A           82 P-------------WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPACVS  146 (356)
T ss_dssp             T-------------TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEEE
T ss_pred             C-------------CCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CCeEcHHHHHHHhhhcchhhccCCceEEE
Confidence            2             57899999999987766  7777  9999999876  37999999999 8875       578999


Q ss_pred             EecCCCcccc---cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccC-CCceEEEEcCCcCCCCCc
Q 018437          208 AILGSTLTGE---FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGLVYA  283 (356)
Q Consensus       208 ~~~~~~~tG~---~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~Ds~~~~~hK~l~~P~  283 (356)
                      +++++| +|.   .+++++|.++|++|      |+++|+|++|+.+...+... ....+.. .++|.+++++||+ ++|.
T Consensus       147 ~~~~~~-tG~~~~~~~l~~i~~~~~~~------~~~li~D~a~~~~~~~~~~~-~~~~~~~~~~~d~~~~s~sK~-g~~~  217 (356)
T 1v72_A          147 ITQATE-VGSIYTLDEIEAIGDVCKSS------SLGLHMDGSRFANALVSLGC-SPAEMTWKAGVDALSFGATKN-GVLA  217 (356)
T ss_dssp             EESSCT-TSCCCCHHHHHHHHHHHHHT------TCEEEEEETTHHHHHHHHTC-CTTTTTGGGTCCEEEECCGGG-TCSS
T ss_pred             EEcCCC-CCccCCHHHHHHHHHHHHHc------CCeEEEEchhhHhHhccCCC-CHHHhhhhhcCCEEEEecccC-CCcC
Confidence            999875 999   57789999999999      99999999997543211111 1111111 3689999999999 5798


Q ss_pred             CeeEEEEe
Q 018437          284 GVGWVVWR  291 (356)
Q Consensus       284 g~g~l~~~  291 (356)
                      |+|+++.+
T Consensus       218 G~g~~~~~  225 (356)
T 1v72_A          218 AEAIVLFN  225 (356)
T ss_dssp             CEEEEESS
T ss_pred             ccEEEEEC
Confidence            88888763

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.85  E-value=3.1e-20  Score=177.21  Aligned_cols=199  Identities=9%  Similarity=-0.015  Sum_probs=151.7

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHH-HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTE-LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~-le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      .+++.+.+++.+.++.....|...  ..+ +++++.+++.+.+|.+.+.   ..+++|+|+++++..++.++..+     
T Consensus        41 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~---~~v~~t~g~~~al~~~~~~l~~~-----  110 (390)
T 1d2f_A           41 ATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDS---QTVVYGPSVIYMVSELIRQWSET-----  110 (390)
T ss_dssp             CCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCG---GGEEEESCHHHHHHHHHHHSSCT-----
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCH---HHEEEcCCHHHHHHHHHHHhcCC-----
Confidence            345788999888876433333332  556 8888888888888854321   35899999999999998877432     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC--ccccCHHHHHHHHhh-CceEEEEecCCCcccccCC--
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG--YYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED--  220 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~--~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~--  220 (356)
                              +++|+++.++|..+...++..|++++.+|++.+  ++.+|+++|++++++ ++++|++++|+||||.+.|  
T Consensus       111 --------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~  182 (390)
T 1d2f_A          111 --------GEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCD  182 (390)
T ss_dssp             --------TCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTT
T ss_pred             --------CCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHH
Confidence                    478999999999999999999999999998643  357999999999986 7899999999999999966  


Q ss_pred             -HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C-CCc-eEEEEcCCcCCC-CCcCeeEEEEeCC
Q 018437          221 -VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L-PLV-KSINVSGHKYGL-VYAGVGWVVWRTK  293 (356)
Q Consensus       221 -i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~-~~~-Ds~~~~~hK~l~-~P~g~g~l~~~~~  293 (356)
                       +++|.++|+++      |+++|+|++|+.+...   ......+. . ... |. ..+++|+++ ....+|+++++++
T Consensus       183 ~l~~l~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~  250 (390)
T 1d2f_A          183 ELEIMADLCERH------GVRVISDEIHMDMVWG---EQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENS  250 (390)
T ss_dssp             HHHHHHHHHHHT------TCEEEEECTTTTCBCS---SSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSH
T ss_pred             HHHHHHHHHHHc------CCEEEEEccccccccC---CCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCH
Confidence             89999999999      9999999999876431   11111221 1 122 66 888999975 3345799988643

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.85  E-value=7.4e-22  Score=187.00  Aligned_cols=247  Identities=15%  Similarity=0.014  Sum_probs=176.6

Q ss_pred             cccCCCChHHHHHHHHHHhcc---cCCC----cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCChhHHHHHH
Q 018437           62 SFVTTWMEPECDKLVMASINK---NYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLA  133 (356)
Q Consensus        62 ~~~~~~~~~~v~~~i~~~~~~---~~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~a  133 (356)
                      .-.|++.++.|.+++...+..   |+..    ...++.+.++.+++++.+++++|++++    ..++| |+|||+++.++
T Consensus        10 ~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~----~~v~f~t~~~T~a~n~~   85 (361)
T 3m5u_A           10 SAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD----YEVLFLQGGASLQFAMI   85 (361)
T ss_dssp             CSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHH
T ss_pred             cCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCcHHHHHHHH
Confidence            445667788999999887653   2221    112446678888999999999999742    23677 99999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC---eEEecCCCcchHHHHHHhhCCeeEEEEecCCccc--cCHHHHHHHHhhCceEEEE
Q 018437          134 GLAFKRKWQQKRKEQGKPYDKP---NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYV--MNPVKAVELVDENTICVAA  208 (356)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~---~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~--~d~~~L~~~i~~~~~~v~~  208 (356)
                      +..+. +             ++   .|+.+..+|. +...++..|++++.++++++ +.  ++++.  + |++++++|.+
T Consensus        86 ~~~~~-~-------------~~~~~~i~~~~~~~~-~~~~a~~~G~~v~~~~~~~~-g~~~~~~~~--~-l~~~t~lv~~  146 (361)
T 3m5u_A           86 PMNLA-L-------------NGVCEYANTGVWTKK-AIKEAQILGVNVKTVASSEE-SNFDHIPRV--E-FSDNADYAYI  146 (361)
T ss_dssp             HHHHC-C-------------SSCEEEEECSHHHHH-HHHHHHHTTCCEEEEEECTT-TTSCSCCCC--C-CCTTSSEEEE
T ss_pred             HHhcC-C-------------CCeEEEEeCCHHHHH-HHHHHHHcCCceEEEecccC-cCCCcCChh--h-cCCCCCEEEE
Confidence            88764 2             22   3455555664 34455667999999999875 43  56666  4 8889999999


Q ss_pred             ecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEE
Q 018437          209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       209 ~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      ++.+|.+|++.|.     +++ +      ++++|||++++.+..|       ++++  .+|.+++++|||+ +|.|+|++
T Consensus       147 ~~~e~~tG~~~~~-----i~~-~------~~~~~vD~~q~~g~~~-------id~~--~~d~~~~s~~K~~-gp~G~g~l  204 (361)
T 3m5u_A          147 CSNNTIYGTQYQN-----YPK-T------KTPLIVDASSDFFSRK-------VDFS--NIALFYGGVQKNA-GISGLSCI  204 (361)
T ss_dssp             ESEETTTTEECSS-----CCC-C------SSCEEEECGGGTTSSC-------CCCT--TEEEEEEETTTTS-SCTTCEEE
T ss_pred             eCCCCCcceeCCc-----ccc-c------CCEEEEEcccccCCCC-------CCcc--cCCEEEEechhcc-CCCccEEE
Confidence            9999999998552     232 5      8999999999876653       4543  5899999999999 69999999


Q ss_pred             EEeCCCCCcccccc--ccCCCCCC--CCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCccc
Q 018437          289 VWRTKDDLPDELVF--HINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFLV  355 (356)
Q Consensus       289 ~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l~  355 (356)
                      +++++..  +.+..  .+.++...  .......+|.+...++++.++++.+-.+ |++++.++..+++++|.
T Consensus       205 ~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~  274 (361)
T 3m5u_A          205 FIRKDML--ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLY  274 (361)
T ss_dssp             EEEHHHH--HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             EEcHHHH--hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            9986421  11100  11121110  0011234799998899999999998887 89999999999888764

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.85  E-value=1.1e-20  Score=178.67  Aligned_cols=248  Identities=14%  Similarity=0.026  Sum_probs=170.6

Q ss_pred             cCCCChHHHHHHHHHHhcccCC-------CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYV-------DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~-------~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      .+.++++.+.+++.+++.....       ....++...++.+++++++++++|++++.   ...++|+||++++..++.+
T Consensus        11 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~---~~i~~t~g~t~a~~~~~~~   87 (362)
T 2c0r_A           11 GPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGY---KVLFIQGGASTQFAMIPMN   87 (362)
T ss_dssp             SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSE---EEEEESSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCc---EEEEECCCchHHHHHHHHh
Confidence            3556778899999887753210       11124566778889999999999997410   1246789999999999988


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecC---CccccCHHHHHHHHhhCceEEEEecC
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEE---GYYVMNPVKAVELVDENTICVAAILG  211 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~---~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (356)
                      +.++             +++|+++.+.|++  +...++..| +++.++++.   .+..+|.++++  ++++|++|+++++
T Consensus        88 l~~~-------------gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~  151 (362)
T 2c0r_A           88 FLKE-------------GQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSN  151 (362)
T ss_dssp             HCCT-------------TCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESE
T ss_pred             cCCC-------------CCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCC
Confidence            7432             4688877776665  346677789 999999872   11245766654  6778999999999


Q ss_pred             CCccccc-CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          212 STLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       212 ~~~tG~~-~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      +|+||.+ .|+++|      +      ++++|+|++|+.+..+       .++.  ..|.++.++|||+ +|.|+|++++
T Consensus       152 ~n~tG~~~~~l~~i------~------~~~vivD~a~~~~~~~-------~~~~--~~d~~~~s~~K~~-g~~G~G~l~~  209 (362)
T 2c0r_A          152 ETIEGAQFKAFPDT------G------SVPLIGDMSSDILSRP-------FDLN--QFGLVYAGAQKNL-GPSGVTVVIV  209 (362)
T ss_dssp             ETTTTEECSSCCCC------T------TSCEEEECTTTTTSSC-------CCGG--GCSEEEEETTTTT-CCSSCEEEEE
T ss_pred             cCccceeccccccc------C------CCEEEEEChhhccCCc-------cchh--HCcEEEEeccccc-cCcCcEEEEE
Confidence            9999995 888887      7      9999999999865442       2332  2389999999998 5889999999


Q ss_pred             eCCCCCccccccc-cCCCCCC--CCCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCcc
Q 018437          291 RTKDDLPDELVFH-INYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFL  354 (356)
Q Consensus       291 ~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l  354 (356)
                      +++ .. +.+... +.+....  .......+|.+....+++.++++.+... |++++.++..+++++|
T Consensus       210 ~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l  275 (362)
T 2c0r_A          210 RED-LV-AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLI  275 (362)
T ss_dssp             EGG-GS-SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             cHH-HH-hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            764 22 111110 1111000  0000123567766678888888877665 7888888888777765

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.85  E-value=1.8e-20  Score=178.82  Aligned_cols=188  Identities=12%  Similarity=0.041  Sum_probs=140.1

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHH-HHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMI-AHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKR  145 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~l-a~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~  145 (356)
                      +++.+.+++.+.+..+...+ ..+...++|+    .+ ++++|..      ...++++|||+|+..++.++ ..+     
T Consensus        14 ~~~~i~~a~~~~~~~~~~~~-~~~~~~~l~~----~~~a~~~g~~------~~~v~~~sgt~al~~al~~l~~~~-----   77 (377)
T 3ju7_A           14 PVIEYLDELKEIDASHIYTN-YGPINQRFEQ----TIMSGFFQNR------GAVTTVANATLGLMAAIQLKKRKK-----   77 (377)
T ss_dssp             CGGGGHHHHHHHHHHTCCSS-SCHHHHHHHH----HHHHHTSTTC------SEEEEESCHHHHHHHHHHHHSCTT-----
T ss_pred             CcHHHHHHHHHHHHcCCccc-CCHHHHHHHH----HHHHHHhCCC------CeEEEeCCHHHHHHHHHHHcCCCC-----
Confidence            34567788877776543221 2344555554    47 8899832      12789999999999998876 332     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHH-hhC--ceEEEEecCCCcccccCCHH
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV-DEN--TICVAAILGSTLTGEFEDVK  222 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i-~~~--~~~v~~~~~~~~tG~~~~i~  222 (356)
                              +++|+++.++|.++..++...|+++++++++++++.+|+++|++++ +++  |++|+   ++|++|.+.|++
T Consensus        78 --------Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~  146 (377)
T 3ju7_A           78 --------GKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLE  146 (377)
T ss_dssp             --------CCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCH
T ss_pred             --------cCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHH
Confidence                    5799999999999999999999999999998656999999999998 666  88776   678899999999


Q ss_pred             HHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       223 ~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      +|.++|+ +      |+++|+|++|+.+..  ... ....-....++.+++++||++.+ ...|+++.+++
T Consensus       147 ~i~~la~-~------~~~vi~D~a~a~g~~--~~~-~~~g~~~~d~~~~S~~~~K~l~~-g~gG~~~~~~~  206 (377)
T 3ju7_A          147 EYEELEK-K------GVPVVVDAAPGFGLM--NGG-MHYGQDFSGMIIYSFHATKPFGI-GEGGLIYSKNE  206 (377)
T ss_dssp             HHHHHHH-T------TCCBEEECTTCTTCE--ETT-EETTTTCSSEEEEECBTTSSSCC-BSCEEEEESCH
T ss_pred             HHHHHHh-c------CCEEEEECCCccCCe--ECC-EeccCCCCcEEEEECCCCCcCCC-CCcEEEEECCH
Confidence            9999999 9      999999999975433  111 11100113467777778999976 45577766654

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.85  E-value=6.3e-21  Score=182.20  Aligned_cols=185  Identities=11%  Similarity=0.077  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HHHHHHHHHhc
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ  148 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~  148 (356)
                      +.+.+++.+.+..+.+. ...+...    ++++.+++++|.+.       +++++|||+|+..++.++ ..+        
T Consensus        36 ~~~~~a~~~~~~~~~~~-~~~~~~~----~l~~~la~~~~~~~-------~i~~~~gt~al~~~l~~~~~~~--------   95 (391)
T 3dr4_A           36 GNERDYVLECMDTTWIS-SVGRFIV----EFEKAFADYCGVKH-------AIACNNGTTALHLALVAMGIGP--------   95 (391)
T ss_dssp             SSHHHHHHHHHHHTCCS-SCSHHHH----HHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHTCCT--------
T ss_pred             HHHHHHHHHHHHcCCcc-CCChHHH----HHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCCC--------
Confidence            56677777666543322 1333444    45556888888863       789999999999999877 321        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHH
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL  228 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~  228 (356)
                           +++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+   ++|+||.+.|+++|.++|
T Consensus        96 -----gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~  167 (391)
T 3dr4_A           96 -----GDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVA  167 (391)
T ss_dssp             -----TCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred             -----cCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHH
Confidence                 579999999999999999999999999999865689999999999998888776   578999999999999999


Q ss_pred             HHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      +++      |+++|+|++|+.+...  .+. ... ....+++++++.||++.++ ..|+++.+++
T Consensus       168 ~~~------~~~li~D~a~~~g~~~--~~~-~~~-~~~di~~~S~s~~K~l~~g-~gg~~~~~~~  221 (391)
T 3dr4_A          168 RRH------NLLVIEDAAEAVGATY--RGK-KSG-SLGDCATFSFFGNAIITTG-EGGMITTNDD  221 (391)
T ss_dssp             HHT------TCEEEEECTTCTTCEE--TTE-ETT-SSSSEEEEECBTTSSSCCB-SCEEEEESCH
T ss_pred             HHc------CCEEEEECcccccceE--CCe-eec-ccCCEEEEECCCCCcCCcC-CeEEEEECCH
Confidence            999      9999999999854431  111 010 1224677777799999664 4567666543

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.85  E-value=2.9e-20  Score=177.26  Aligned_cols=186  Identities=12%  Similarity=0.064  Sum_probs=142.4

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HHHHHHHHHh
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKE  147 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~  147 (356)
                      .+.+.+++.+.+..+...+...+...+    +++.+++++|.+.       .+++++||+|+.+++.++ ..+       
T Consensus        16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~----l~~~la~~~~~~~-------~i~~~sGt~al~~~l~~l~~~~-------   77 (388)
T 1b9h_A           16 DDAERNGLVRALEQGQWWRMGGDEVNS----FEREFAAHHGAAH-------ALAVTNGTHALELALQVMGVGP-------   77 (388)
T ss_dssp             CHHHHHHHHHHHHTSCCBTTTCSHHHH----HHHHHHHHTTCSE-------EEEESCHHHHHHHHHHHTTCCT-------
T ss_pred             CHHHHHHHHHHHHcCCeeecCCHHHHH----HHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHcCCCC-------
Confidence            377888888887653222333344444    4555888888762       345555699999999876 221       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i  227 (356)
                            +++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+   ++|++|.+.|+++|.++
T Consensus        78 ------gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l  148 (388)
T 1b9h_A           78 ------GTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKI  148 (388)
T ss_dssp             ------TCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHH
T ss_pred             ------cCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHH
Confidence                  468999999999999999999999999999875589999999999988887776   89999999999999999


Q ss_pred             HHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      |+++      |+++|+|++|+.+..+  ..   .++. ...++.++++.||++.++ ..|+++.+++
T Consensus       149 a~~~------~~~li~D~a~~~g~~~--~~---~~~~~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~  203 (388)
T 1b9h_A          149 SADT------GVPLLQDAAHAHGARW--QG---KRVGELDSIATFSFQNGKLMTAG-EGGAVVFPDG  203 (388)
T ss_dssp             HHHH------TCCBCEECTTCTTCEE--TT---EEGGGSSSCEEEECCTTSSSCSS-SCEEEEECTT
T ss_pred             HHHc------CCEEEEecchhcCCcc--CC---eecccccceEEEEccCCCcccCC-CeEEEEECCH
Confidence            9999      9999999999864431  11   1122 224788889999998665 4688887654

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.84  E-value=3.8e-20  Score=174.95  Aligned_cols=203  Identities=13%  Similarity=0.012  Sum_probs=150.8

Q ss_pred             cccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|....+. ++++.+.+++.+.+.... .|..... .    ++++.+++++|++.     ..+++|+||++++..++.+
T Consensus        33 i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~y~~~~~-~----~lr~~la~~~~~~~-----~~v~~~~g~~~a~~~~~~~  101 (365)
T 3get_A           33 IKLASNENPFGTPPKAIECLRQNANKAH-LYPDDSM-I----ELKSTLAQKYKVQN-----ENIIIGAGSDQVIEFAIHS  101 (365)
T ss_dssp             EECSSCCCTTCSCHHHHHHHHHHGGGTT-SCCCTTC-H----HHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHHHH
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHhhc-cCCCCCh-H----HHHHHHHHHhCCCc-----ceEEECCCHHHHHHHHHHH
Confidence            344444333 356789999988876322 2222222 3    45666888889865     3489999999999999887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      +.++             +++|+++.++|..+...++..|++++.+|++++++ +|+++|++++++++++|++++|+||||
T Consensus       102 l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG  167 (365)
T 3get_A          102 KLNS-------------KNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLG  167 (365)
T ss_dssp             HCCT-------------TCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTC
T ss_pred             HhCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCC
Confidence            7432             57999999999999999999999999999833358 999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHH--HhhhccCCCCcEEEecccccccc--cccCCCCcccc-cCCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          217 EFEDVKLLHDLLT--KKNEETGWDTPIHVDAASGGFIA--PFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       217 ~~~~i~~I~~i~~--~~~~~~~~~~~l~vD~a~~~~~~--~~~~~~~~~~~-~~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      .+.|++++.++++  ++      ++++++|++|+.+..  .--.+...... .....+.+..++||+++ .+.++|+++.
T Consensus       168 ~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  241 (365)
T 3get_A          168 ECLDASEATEFIKGVNE------DCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA  241 (365)
T ss_dssp             CCCCHHHHHHHHHTSCT------TSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE
T ss_pred             CCcCHHHHHHHHHhCCC------CcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc
Confidence            9999999999998  66      999999999986552  10000001111 12245677889999975 4567899987


Q ss_pred             e
Q 018437          291 R  291 (356)
Q Consensus       291 ~  291 (356)
                      .
T Consensus       242 ~  242 (365)
T 3get_A          242 N  242 (365)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.84  E-value=7.9e-21  Score=181.39  Aligned_cols=242  Identities=12%  Similarity=-0.055  Sum_probs=163.5

Q ss_pred             ChHHHHHHHHHHhcccCCCcc---cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      +++.+.+++.+.+......+.   ...+......++++++++++|.+.       .+++++|++++..++.++.++    
T Consensus        58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~-------~i~~~sGt~a~~~~l~~~~~~----  126 (399)
T 3tqx_A           58 DHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDD-------TILYSSCFDANGGLFETLLGP----  126 (399)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHTTHHHHCCT----
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCc-------EEEECchHHHHHHHHHHhcCC----
Confidence            357788887777654221111   112334556678888999999863       566667799999888776432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCccccc
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEF  218 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~  218 (356)
                               +++|+++.++|.++...++..|++++.+|.      +|+++|++++++      ++++|++++++||||.+
T Consensus       127 ---------gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~  191 (399)
T 3tqx_A          127 ---------EDAIISDELNHASIIDGIRLCKAQRYRYKN------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGII  191 (399)
T ss_dssp             ---------TCEEEEETTCCHHHHHHHHSCCSEEEEECT------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEE
T ss_pred             ---------CCEEEECCcccHHHHHHHHHcCCceeEeCC------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCc
Confidence                     579999999999999999999999988875      366788888876      79999999999999999


Q ss_pred             CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc-c-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-R-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       219 ~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      .|+++|.++|+++      ++++|+|++|+.++.+.. ....... . ....|.++.++||+++++.| |+++.++ +..
T Consensus       192 ~~l~~i~~l~~~~------~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~~  262 (399)
T 3tqx_A          192 ADLKSICDLADKY------NALVMVDDSHAVGFIGEN-GRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHK-EII  262 (399)
T ss_dssp             CCHHHHHHHHHHT------TCEEEEECTTTTTTSSTT-SCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECH-HHH
T ss_pred             CCHHHHHHHHHHc------CCEEEEECCccccccCCC-CCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCH-HHH
Confidence            9999999999999      999999999964333110 0011111 1 23679999999999876777 8887653 222


Q ss_pred             cccccc-ccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          297 PDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       297 ~~~~~~-~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                       +.+.. ...|..        .++.+....+++..+++.+. ++++++.++..+++++|
T Consensus       263 -~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l  311 (399)
T 3tqx_A          263 -EWLRNRSRPYLF--------SNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYF  311 (399)
T ss_dssp             -HHHHHHCHHHHS--------SCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHH
T ss_pred             -HHHHHhCcceec--------cCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHH
Confidence             12111 011111        12334444555666666553 44555666555555444

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.84  E-value=9.2e-20  Score=172.16  Aligned_cols=203  Identities=17%  Similarity=0.094  Sum_probs=150.4

Q ss_pred             cccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|....++ ++++.+.+++.+.+.....++  .++.    .++++++++++|+++     ..+++|+||++++..++.+
T Consensus        35 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~--~~~~----~~lr~~la~~~~~~~-----~~v~~~~g~t~a~~~~~~~  103 (363)
T 3ffh_A           35 TKLSSNENPLGTSKKVAAIQANSSVETEIYP--DGWA----SSLRKEVADFYQLEE-----EELIFTAGVDELIELLTRV  103 (363)
T ss_dssp             EECSSCSCTTCCCHHHHHHHHTCBSCCCBC------C----HHHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHHHH
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHHHhhcCC--Ccch----HHHHHHHHHHhCCCh-----hhEEEeCCHHHHHHHHHHH
Confidence            344444333 346788888887664322222  2232    356667888899875     3489999999999999987


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      +.++             +++|+++.++|.++...++..|++++.+|++++ +.+|+++|++++++++++|++++++||||
T Consensus       104 ~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~p~nptG  169 (363)
T 3ffh_A          104 LLDT-------------TTNTVMATPTFVQYRQNALIEGAEVREIPLLQD-GEHDLEGMLNAIDEKTTIVWICNPNNPTG  169 (363)
T ss_dssp             HCST-------------TCEEEEEESSCHHHHHHHHHHTCEEEEEECCTT-SCCCHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred             HccC-------------CCEEEEcCCChHHHHHHHHHcCCEEEEecCCCC-CCcCHHHHHHhcccCCCEEEEeCCCCCcC
Confidence            7432             579999999999999999999999999999874 89999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc-cCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       217 ~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      .+.|+++|.++++.+.+    |+++|+|++|+.+..+  ........ ....-+.+..+.+|+++ ...++|+++.+
T Consensus       170 ~~~~~~~l~~l~~~~~~----~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~  240 (363)
T 3ffh_A          170 NYIELADIQAFLDRVPS----DVLVVLDEAYIEYVTP--QPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIAD  240 (363)
T ss_dssp             CCCCHHHHHHHHTTSCT----TSEEEEECTTGGGCSS--CCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEEC
T ss_pred             CCcCHHHHHHHHHhCCC----CcEEEEeCchHhhcCc--cccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecC
Confidence            99999999999997733    7999999999865431  00001111 12334566778899874 33455999874

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.84  E-value=3.2e-21  Score=182.85  Aligned_cols=180  Identities=17%  Similarity=0.101  Sum_probs=139.2

Q ss_pred             HHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HHHHHHHHHhcCC
Q 018437           72 CDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQGK  150 (356)
Q Consensus        72 v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~g~  150 (356)
                      +.+++.+.+....  +...+...    ++++.+++++|.+.       +++++||++|+..++.++ ..           
T Consensus        21 ~~~~~~~~~~~~~--~~~~~~~~----~l~~~la~~~~~~~-------~~~~~~gt~a~~~~~~~~~~~-----------   76 (374)
T 3uwc_A           21 YLNDLREFIKTAD--FTLGAELE----KFEKRFAALHNAPH-------AIGVGTGTDALAMSFKMLNIG-----------   76 (374)
T ss_dssp             HHHHHHHHHHHTC--CSSCHHHH----HHHHHHHHHTTCSE-------EEEESCHHHHHHHHHHHTTCC-----------
T ss_pred             HHHHHHHHHHcCC--cccChhHH----HHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC-----------
Confidence            7777777765432  33334444    45556888888863       789999999999988876 32           


Q ss_pred             CCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHH
Q 018437          151 PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK  230 (356)
Q Consensus       151 ~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~  230 (356)
                        .+++|+++.++|.++...++..|++++.+|+++ ++.+|+++|++++++++++|+   ++||+|.+.|+++|.++|++
T Consensus        77 --~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~  150 (374)
T 3uwc_A           77 --AGDEVITCANTFIASVGAIVQAGATPVLVDSEN-GYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKK  150 (374)
T ss_dssp             --TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHH
T ss_pred             --CCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHH
Confidence              157999999999999999999999999999984 589999999999988888776   88999999999999999999


Q ss_pred             hhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCC--cCCCCCcCeeEEEEeCC
Q 018437          231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       231 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~l~~~~~  293 (356)
                      +      ++++|+|++|+.+..  ....   .. ....|.++.++|  |+++++...|+++.+++
T Consensus       151 ~------~~~li~D~~~~~g~~--~~~~---~~-~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~  203 (374)
T 3uwc_A          151 H------NLHIVEDACQTILGR--INDK---FV-GSWGQFACFSLHPLKNLNVWSDAGVIITHSD  203 (374)
T ss_dssp             T------TCEEEEECTTCTTCE--ETTE---ET-TSSSSEEEEECSSSSSSCCSSCCEEEEESCH
T ss_pred             c------CCEEEEeCCCccCce--eCCe---ec-cccccEEEEeCCCCCcCCccceeEEEEeCCH
Confidence            9      999999999986533  1111   11 112589999977  99865344677766543

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.84  E-value=7.6e-21  Score=180.28  Aligned_cols=185  Identities=13%  Similarity=0.080  Sum_probs=139.9

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      .+.+.+++.+.+....  +...+...+    +++.+++++|.+.       +++|+|||+|+..++.+++-         
T Consensus        15 ~~~v~~a~~~~~~~~~--~~~~~~~~~----l~~~la~~~~~~~-------~~~~~sGt~al~~al~~~~~---------   72 (367)
T 3nyt_A           15 KDKIDAGIQRVLRHGQ--YILGPEVTE----LEDRLADFVGAKY-------CISCANGTDALQIVQMALGV---------   72 (367)
T ss_dssp             HHHHHHHHHHHHHHCC--CSSCHHHHH----HHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTC---------
T ss_pred             CHHHHHHHHHHHhcCC--ccCChHHHH----HHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHhCC---------
Confidence            3567777777665432  223444444    4455888888863       79999999999999987721         


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHH
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL  228 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~  228 (356)
                         ..+++|+++.++|.++..++...|++++.++++++++.+|+++|++++++++++|+   ++|++|...|+++|.++|
T Consensus        73 ---~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la  146 (367)
T 3nyt_A           73 ---GPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIA  146 (367)
T ss_dssp             ---CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred             ---CCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHH
Confidence               11579999999999999999999999999999876689999999999988888777   888999999999999999


Q ss_pred             HHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEc--CCcCCCCCcCeeEEEEeCC
Q 018437          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~--~hK~l~~P~g~g~l~~~~~  293 (356)
                      +++      |+++|+|++|+.+..  ....   .+...+ |.++.|  +||+++++...|+++.+++
T Consensus       147 ~~~------~~~li~D~a~~~g~~--~~~~---~~~~~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~  201 (367)
T 3nyt_A          147 SKY------GIPVIEDAAQSFGAS--YKGK---RSCNLS-TVACTSFFPSAPLGCYGDGGAIFTNDD  201 (367)
T ss_dssp             HHT------TCCBEEECTTTTTCE--ETTE---ETTSSS-SEEEEECCTTSSSCCSSCCEEEEESCH
T ss_pred             HHc------CCEEEEECccccCCe--ECCe---eccCCC-CEEEEECCCCCcCCCcCceeEEEeCCH
Confidence            999      999999999975433  1111   111112 777777  6999865334677766543

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.84  E-value=6.4e-20  Score=177.63  Aligned_cols=238  Identities=10%  Similarity=-0.057  Sum_probs=164.2

Q ss_pred             ChHHHHHHHHHHhcccCCCc---ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDM---DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      +++.+.+++.+.+......+   ....+......++++++++++|.+.       .+++++|++||..++.++..+    
T Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~-------~i~~~sGs~a~~~al~~l~~~----  147 (427)
T 2w8t_A           79 FDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTG-------AIVFSTGYMANLGIISTLAGK----  147 (427)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHSCT----
T ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCc-------eEEecCcHHHHHHHHHHhcCC----
Confidence            45788888877765422111   1122334566778888999999863       677888899999888776432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh----CceEEEEecCCCcccccCC
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFED  220 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~  220 (356)
                               ++.|+++.++|.++...++..|++++.+|.      +|+++|++++++    ++++|+++.++|++|.+.|
T Consensus       148 ---------gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~------~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~  212 (427)
T 2w8t_A          148 ---------GEYVILDADSHASIYDGCQQGNAEIVRFRH------NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP  212 (427)
T ss_dssp             ---------TCEEEEETTCCHHHHHHHHHSCSEEEEECT------TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC
T ss_pred             ---------CCEEEECCcccHHHHHHHHHcCCeeEEeCC------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC
Confidence                     568999999999999999999998887762      589999999986    7899999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc---ccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCc
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE---WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~  297 (356)
                      +++|.++|+++      |+++|+|++|+++..+. .....   +++ .+++|.+..++||+++ +.| |+++.++ +.. 
T Consensus       213 l~~l~~l~~~~------g~~li~Dea~~~~~~~~-~g~~~~~~~~~-~~~~di~~~s~sK~~g-~~g-G~v~~~~-~l~-  280 (427)
T 2w8t_A          213 LKEMVAVAKKH------GAMVLVDEAHSMGFFGP-NGRGVYEAQGL-EGQIDFVVGTFSKSVG-TVG-GFVVSNH-PKF-  280 (427)
T ss_dssp             HHHHHHHHHHT------TCEEEEECTTTTTTSST-TSCCHHHHTTC-TTCCSEEEEESSSTTC-SCC-EEEEECC-TTG-
T ss_pred             HHHHHHHHHHc------CCEEEEECCccccccCC-CCCchHhhcCC-CcCCcEEEecchhhhc-cCC-CEEEeCH-HHH-
Confidence            99999999999      99999999999866531 00100   122 2468999999999985 666 8888753 333 


Q ss_pred             cccccc-cCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCc
Q 018437          298 DELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPF  353 (356)
Q Consensus       298 ~~~~~~-~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~  353 (356)
                      +.+... ..|..        .++.+....+++.++++.+..  ++++.++..+++++
T Consensus       281 ~~l~~~~~~~~~--------~~~~~~~~~aa~~~al~~~~~--~~~~~~~~~~~~~~  327 (427)
T 2w8t_A          281 EAVRLACRPYIF--------TASLPPSVVATATTSIRKLMT--AHEKRERLWSNARA  327 (427)
T ss_dssp             GGGGGTCHHHHS--------SCCCCHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccc--------cCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHH
Confidence            222111 11111        134444445666677776542  23344444444433

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.84  E-value=2.9e-20  Score=178.71  Aligned_cols=212  Identities=12%  Similarity=-0.036  Sum_probs=157.6

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      ++|..+.+.. +++.+.+++.+.+... ...|....+..++++++.+++++.+|++.+.  ...+++|+|+++++..++.
T Consensus        50 idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~~v~~t~G~~~al~~~~~  127 (404)
T 2o1b_A           50 INMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDK--EDEVCILYGTKNGLVAVPT  127 (404)
T ss_dssp             EECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCT--TTSEEEESSHHHHHHHHHH
T ss_pred             EecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--cccEEEcCCcHHHHHHHHH
Confidence            3444444432 3578888888777532 2233334567889999888888888986310  1248999999999999998


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      ++.++             +++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|++++|+|||
T Consensus       128 ~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt  194 (404)
T 2o1b_A          128 CVINP-------------GDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPT  194 (404)
T ss_dssp             HHCCT-------------TCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTT
T ss_pred             HhcCC-------------CCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCC
Confidence            87432             47899999999999999999999999999976446799999999998888999999999999


Q ss_pred             cccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       216 G~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      |.+.|   +++|.++|+++      ++++++|++|+.+...- .+.....+. ..+.+.+..++||+++ ....+|+++.
T Consensus       195 G~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~  267 (404)
T 2o1b_A          195 GSTATKEVFDEAIAKFKGT------DTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG  267 (404)
T ss_dssp             CCCCCHHHHHHHHHHHTTS------SCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE
T ss_pred             CccCCHHHHHHHHHHHHHc------CCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccCchhheEeEec
Confidence            99965   78899999999      99999999998754310 000011111 1145778889999985 3346899876


Q ss_pred             e
Q 018437          291 R  291 (356)
Q Consensus       291 ~  291 (356)
                      +
T Consensus       268 ~  268 (404)
T 2o1b_A          268 N  268 (404)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.84  E-value=2.8e-20  Score=191.93  Aligned_cols=221  Identities=14%  Similarity=-0.017  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~  177 (356)
                      .+.++.+++++|.+.      ..++++|+++||..++.++..+             +++|+++.++|.++...+...|++
T Consensus       208 ~~~ee~la~l~G~d~------~i~~~~Gtt~a~~~~i~al~~~-------------GD~Vlv~~~~h~s~~~~~~~~G~~  268 (755)
T 2vyc_A          208 GESEKYAARVFGADR------SWSVVVGTSGSNRTIMQACMTD-------------NDVVVVDRNCHKSIEQGLMLTGAK  268 (755)
T ss_dssp             HHHHHHHHHHHTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHHCCE
T ss_pred             HHHHHHHHHHhCCCc------eEEECCcHHHHHHHHHHHhcCC-------------CCEEEECCCchHHHHHHHHHcCCE
Confidence            466778999999874      3567888889999999887543             579999999999999999999999


Q ss_pred             eEEEEecCCc----ccc-----CHHHHHHHHhh--Cce--------EEEEecCCCcccccCCHHHHHHHHHHhhhccCCC
Q 018437          178 LKEVKLEEGY----YVM-----NPVKAVELVDE--NTI--------CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD  238 (356)
Q Consensus       178 v~~v~~~~~~----~~~-----d~~~L~~~i~~--~~~--------~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~  238 (356)
                      +++++.+.++    +.+     |+++|++++++  +++        +++++++ |++|.+.|+++|+++|+++      +
T Consensus       269 ~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~------~  341 (755)
T 2vyc_A          269 PVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKT------S  341 (755)
T ss_dssp             EEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTT------C
T ss_pred             EEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHc------C
Confidence            9999986432    245     99999999975  343        8888888 6899999999999999999      9


Q ss_pred             CcEEEecccccccccccCCCC-cccccCCC--ceE------EEEcCCcCCCCCcCeeEEEEeCC--CCCccccccccCCC
Q 018437          239 TPIHVDAASGGFIAPFLYPDL-EWDFRLPL--VKS------INVSGHKYGLVYAGVGWVVWRTK--DDLPDELVFHINYL  307 (356)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~--~Ds------~~~~~hK~l~~P~g~g~l~~~~~--~~~~~~~~~~~~~~  307 (356)
                      +++|+|+||+++.. | .+.. ... ...+  +|.      ++.|+||++.+|.++|+++++++  ......+.......
T Consensus       342 ~~livDeA~~~~~~-~-~~~~~~~~-~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~  418 (755)
T 2vyc_A          342 DRLHFDEAWYGYAR-F-NPIYADHY-AMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMH  418 (755)
T ss_dssp             SEEEEECTTCTTGG-G-CGGGTTSS-SSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHT
T ss_pred             CEEEEECcCchhcc-c-CcccCCcc-hhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHh
Confidence            99999999986432 1 1110 000 0134  676      89999999999999999999865  11111110001111


Q ss_pred             CCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          308 GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       308 ~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                              ..+|.+...++++.++++.+..+|.++++++..+++++++
T Consensus       419 --------~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r  458 (755)
T 2vyc_A          419 --------ATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFR  458 (755)
T ss_dssp             --------SCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHH
T ss_pred             --------CCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence                    1246666667888888888877766778888877776653

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.84  E-value=2.9e-20  Score=179.19  Aligned_cols=212  Identities=13%  Similarity=0.065  Sum_probs=162.6

Q ss_pred             CcccccccCCC-ChHHHHHHHHHHhcccC--CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHH
Q 018437           57 RLNLASFVTTW-MEPECDKLVMASINKNY--VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (356)
Q Consensus        57 ~~~l~~~~~~~-~~~~v~~~i~~~~~~~~--~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (356)
                      .++|+.+.+.. +++.+.+++.+.+....  ..|....+..++++++.+++.+.+|.+.+.  ...+++|+||++++..+
T Consensus        30 ~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~--~~~i~~~~g~~~a~~~~  107 (422)
T 3fvs_A           30 VVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP--LRNVLVTVGGYGALFTA  107 (422)
T ss_dssp             CEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH--HHHEEEESHHHHHHHHH
T ss_pred             ceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC--CCcEEEECChHHHHHHH
Confidence            34555555543 45788888888776432  344444567889999999999999976421  02489999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-----------CccccCHHHHHHHHhhC
Q 018437          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-----------GYYVMNPVKAVELVDEN  202 (356)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-----------~~~~~d~~~L~~~i~~~  202 (356)
                      +.++..+             +++|+++.++|..+...++..|++++.+|++.           +++.+|+++|+++++++
T Consensus       108 ~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~  174 (422)
T 3fvs_A          108 FQALVDE-------------GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR  174 (422)
T ss_dssp             HHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT
T ss_pred             HHHHcCC-------------CCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCC
Confidence            9887432             56899999999999999999999999999875           24689999999999989


Q ss_pred             ceEEEEecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc----CCCceEEEEcC
Q 018437          203 TICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR----LPLVKSINVSG  275 (356)
Q Consensus       203 ~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~----~~~~Ds~~~~~  275 (356)
                      +++|++++|+||||.+.   ++++|.++|+++      |+++|+|++|+.+...   +.....+.    ..+.+.+..++
T Consensus       175 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~S~  245 (422)
T 3fvs_A          175 TKALVLNTPNNPLGKVFSREELELVASLCQQH------DVVCITDEVYQWMVYD---GHQHISIASLPGMWERTLTIGSA  245 (422)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCT---TCCCCCGGGSTTTGGGEEEEEEH
T ss_pred             ceEEEECCCCCCCCcCCCHHHHHHHHHHHHHc------CcEEEEEccchhhccC---CCCCCChhhcccccCcEEEEecc
Confidence            99999999999999997   589999999999      9999999999875542   11111111    12445677789


Q ss_pred             CcCCC-CCcCeeEEEEeC
Q 018437          276 HKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       276 hK~l~-~P~g~g~l~~~~  292 (356)
                      +|.++ ...++|+++.++
T Consensus       246 sK~~g~~G~r~G~~~~~~  263 (422)
T 3fvs_A          246 GKTFSATGWKVGWVLGPD  263 (422)
T ss_dssp             HHHHTCGGGCCEEEECCH
T ss_pred             hhccCCccceEEEEEeCH
Confidence            99975 346789987643

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.84  E-value=4.2e-20  Score=177.24  Aligned_cols=211  Identities=10%  Similarity=0.049  Sum_probs=161.5

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      ++|+.+.+.. +++.+.+++.+.+... ...|....+..++++++.+++.+.+|.+.+.  ...+++|+||++++..++.
T Consensus        26 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~--~~~i~~~~g~~~a~~~~~~  103 (410)
T 3e2y_A           26 VNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDP--NEEILVAVGAYGSLFNSIQ  103 (410)
T ss_dssp             EECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT--TTSEEEESHHHHHHHHHHH
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCC--CCCEEEeCCcHHHHHHHHH
Confidence            4565555553 4578899888877643 2234444467889999999999988876421  1358999999999999998


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC----------CccccCHHHHHHHHhhCceE
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE----------GYYVMNPVKAVELVDENTIC  205 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~----------~~~~~d~~~L~~~i~~~~~~  205 (356)
                      ++.++             +++|+++.++|..+...++..|++++.+|++.          .++.+|+++|++++++++++
T Consensus       104 ~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~  170 (410)
T 3e2y_A          104 GLVDP-------------GDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKA  170 (410)
T ss_dssp             HHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEE
T ss_pred             HhcCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceE
Confidence            87432             57899999999999999999999999999862          24789999999999888999


Q ss_pred             EEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc----CCCceEEEEcCCcC
Q 018437          206 VAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR----LPLVKSINVSGHKY  278 (356)
Q Consensus       206 v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~----~~~~Ds~~~~~hK~  278 (356)
                      |++++|+||||.+   +++++|.++|+++      ++++|+|++|+++...   +.....+.    ....+.+..+++|.
T Consensus       171 v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~S~sK~  241 (410)
T 3e2y_A          171 IILNTPHNPLGKVYTRQELQVIADLCVKH------DTLCISDEVYEWLVYT---GHTHVKIATLPGMWERTITIGSAGKT  241 (410)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCT---TCCCCCGGGSTTCGGGEEEEEEHHHH
T ss_pred             EEEeCCCCCCCcCcCHHHHHHHHHHHHHc------CcEEEEEhhhhhcccC---CCCCCCHHHcCCccCeEEEEecchhh
Confidence            9999999999999   6799999999999      9999999999875541   11111111    12345667788998


Q ss_pred             CC-CCcCeeEEEEeC
Q 018437          279 GL-VYAGVGWVVWRT  292 (356)
Q Consensus       279 l~-~P~g~g~l~~~~  292 (356)
                      ++ ...++|+++.++
T Consensus       242 ~g~~G~r~G~~~~~~  256 (410)
T 3e2y_A          242 FSVTGWKLGWSIGPA  256 (410)
T ss_dssp             SSCGGGCCEEEECCH
T ss_pred             cCCCCceEEEEEECH
Confidence            75 456789887643

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.84  E-value=2e-19  Score=172.47  Aligned_cols=208  Identities=13%  Similarity=0.030  Sum_probs=155.3

Q ss_pred             CCcccccccCC---CChHHHHHHHHHHhccc---CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHH
Q 018437           56 PRLNLASFVTT---WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (356)
Q Consensus        56 ~~~~l~~~~~~---~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (356)
                      ..++|..+.+.   .+++.+.+++.+.+...   .. |....+..++++++.+++.+.+|++.+.   ..+++|+||++|
T Consensus        35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~---~~v~~t~g~t~a  110 (407)
T 2zc0_A           35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSP---ENIVITIGGTGA  110 (407)
T ss_dssp             CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCG---GGEEEESHHHHH
T ss_pred             ceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCc---ceEEEecCHHHH
Confidence            33445444433   24578888887776542   22 4444567889999888888888964321   358999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh----h--Cc
Q 018437          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----E--NT  203 (356)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~--~~  203 (356)
                      +..++.++.++             +++|+++.++|..+...++..|++++.+|++++ + +|+++|+++++    +  ++
T Consensus       111 ~~~~~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~-~d~~~l~~~l~~~~~~~~~~  175 (407)
T 2zc0_A          111 LDLLGRVLIDP-------------GDVVITENPSYINTLLAFEQLGAKIEGVPVDND-G-MRVDLLEEKIKELKAKGQKV  175 (407)
T ss_dssp             HHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHhcCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC-C-CCHHHHHHHHHhhhcccCCc
Confidence            99999887532             478999999999999999999999999999864 4 99999999998    6  67


Q ss_pred             eEE-EEecCCCcccccCCHH---HHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc---cccCCCceEEEEcCC
Q 018437          204 ICV-AAILGSTLTGEFEDVK---LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW---DFRLPLVKSINVSGH  276 (356)
Q Consensus       204 ~~v-~~~~~~~~tG~~~~i~---~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~---~~~~~~~Ds~~~~~h  276 (356)
                      ++| ++++++||||.+.|++   +|.++|+++      ++++|+|++|+++...   .....   .+...+.+.+..+++
T Consensus       176 ~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~~~i~~~s~s  246 (407)
T 2zc0_A          176 KLIYTIPTGQNPMGVTMSMERRKALLEIASKY------DLLIIEDTAYNFMRYE---GGDIVPLKALDNEGRVIVAGTLS  246 (407)
T ss_dssp             EEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBSS---CSSCCCGGGGCSSCCEEEEEEST
T ss_pred             eEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEECCCcccccC---CCCCCChhhcCCCCCEEEEcccc
Confidence            776 5788999999998886   999999999      9999999999876441   11111   121123445667789


Q ss_pred             cCCCCCcCeeEEEEe
Q 018437          277 KYGLVYAGVGWVVWR  291 (356)
Q Consensus       277 K~l~~P~g~g~l~~~  291 (356)
                      |+++....+|+++.+
T Consensus       247 K~~~~G~r~G~~~~~  261 (407)
T 2zc0_A          247 KVLGTGFRIGWIIAE  261 (407)
T ss_dssp             TTTCTTSCCEEEECC
T ss_pred             cccCCCcceEEEecC
Confidence            998733458999875

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.83  E-value=4.5e-20  Score=177.32  Aligned_cols=246  Identities=12%  Similarity=-0.002  Sum_probs=158.5

Q ss_pred             CChHHHHHHHHHHhcccC--C-----CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNY--V-----DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~--~-----~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      +.++.+.+++.+.+....  +     .+...+....+++.+++++++++|++.     ..+++++ ||+|+..++.++.+
T Consensus        36 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-----~~i~~~s-Gt~a~~~~~~~~~~  109 (417)
T 3n0l_A           36 FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKF-----ANVQPNS-GSQANQGVYAALIN  109 (417)
T ss_dssp             CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-----EECCCSS-HHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCC-----cceEecc-HHHHHHHHHHHhcC
Confidence            346788888877763221  1     112224557888889999999999975     1244444 58999999888754


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHH---HHHhhCCe--eEEEEecCCccccCHHHHHHHHh-hCceEEEEecCCC
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEK---FARYFEVE--LKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGST  213 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~---~~~~~G~~--v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~  213 (356)
                      +             +++|+++.++|.++..   .+...|..  ++.+++++ ++.+|+++|+++++ +++++|++++++|
T Consensus       110 ~-------------gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~~  175 (417)
T 3n0l_A          110 P-------------GDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVEL-DGRIDYEKVREIAKKEKPKLIVCGASAY  175 (417)
T ss_dssp             T-------------TCEEEEECC----------------CCSEEEEECCCT-TSSCCHHHHHHHHHHHCCSEEEECCSSC
T ss_pred             C-------------CCEEEecccccccccchhhhhhhhcceeeeEeccCCC-CCCcCHHHHHHHHHhcCCeEEEECCccc
Confidence            2             5799999999987654   33444444  55566663 58999999999998 6899998888775


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                        |.+.|+++|.++|+++      |+++|+|+++..+..  ........  ...+|.++.++||++.+|.| |+++.+++
T Consensus       176 --G~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~--~~~~~~~~--~~~~di~~~s~sK~l~g~~~-G~~~~~~~  242 (417)
T 3n0l_A          176 --ARVIDFAKFREIADEI------GAYLFADIAHIAGLV--VAGEHPSP--FPYAHVVSSTTHKTLRGPRG-GIIMTNDE  242 (417)
T ss_dssp             --CSCCCHHHHHHHHHHH------TCEEEEECTTTHHHH--HTTSSCCC--TTTCSEEEEESSTTTCSCSC-EEEEESCH
T ss_pred             --CccCCHHHHHHHHHHc------CCEEEEECccchhhh--hcccCCCc--cccceEEEeeCccccCCCCe-eEEEECCH
Confidence              8999999999999999      999999999754333  11111112  23579999999999877775 88887643


Q ss_pred             CCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +.. +.+.. ..+.+       ..++.+....+++.+++.....++++++.++..+++++|
T Consensus       243 ~~~-~~~~~-~~~~~-------~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l  294 (417)
T 3n0l_A          243 ELA-KKINS-AIFPG-------IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVL  294 (417)
T ss_dssp             HHH-HHHHH-HHTTT-------TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHhh-hhCCc-------ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            222 11110 00111       113444555666677777766667777777766665554

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.83  E-value=6.6e-20  Score=174.46  Aligned_cols=189  Identities=11%  Similarity=-0.032  Sum_probs=139.3

Q ss_pred             ChHHHHHHHHHHhcccCC-C-cccCc-chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYV-D-MDEYP-VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~-~-~~~~~-~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      +++.+.+++.+.+..... . ...++ +......++++.+++++|++.       .+++++|++++..++.++.++    
T Consensus        54 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGt~a~~~~~~~~~~~----  122 (384)
T 1bs0_A           54 HHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR-------ALLFISGFAANQAVIAAMMAK----  122 (384)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT----
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc-------EEEeCCcHHHHHHHHHHhCCC----
Confidence            457888888777654211 1 11111 223455677788999999853       566777799999988876432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhC---ceEEEEecCCCcccccCCH
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN---TICVAAILGSTLTGEFEDV  221 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~---~~~v~~~~~~~~tG~~~~i  221 (356)
                               ++.|+++.++|.++..+++..|++++.+|.      +|+++|++++++.   +++|++++++||||.+.|+
T Consensus       123 ---------gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l  187 (384)
T 1bs0_A          123 ---------EDRIAADRLSHASLLEAASLSPSQLRRFAH------NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPL  187 (384)
T ss_dssp             ---------TCEEEEETTCCHHHHHHHHTSSSEEEEECT------TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCH
T ss_pred             ---------CcEEEEcccccHHHHHHHHHcCCCEEEeCC------CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCH
Confidence                     568999999999999999999999988873      4789999999763   7888899999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      ++|.++|+++      ++++|+|++|+.+..+.........+ ..+.|.++.++||+++ |.| |+++.+
T Consensus       188 ~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~~~~~~-~~~~di~~~s~sK~~~-~~G-G~~~~~  248 (384)
T 1bs0_A          188 AEIQQVTQQH------NGWLMVDDAHGTGVIGEQGRGSCWLQ-KVKPELLVVTFGKGFG-VSG-AAVLCS  248 (384)
T ss_dssp             HHHHHHHHHT------TCEEEEECTTTTTTSSGGGCCHHHHT-TCCCSEEEEESSSTTS-SCC-EEEEEC
T ss_pred             HHHHHHHHHc------CcEEEEECCcccceecCCCCchHHhc-CCCCcEEEeeccchhh-ccC-cEEEeC
Confidence            9999999999      99999999997654310000000111 1357888889999985 777 888875

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.83  E-value=2.8e-20  Score=178.14  Aligned_cols=272  Identities=14%  Similarity=0.024  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhccc-CCCcc------cCcchHHHHHHHHHHHHHHhCCCC
Q 018437           40 EAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKN-YVDMD------EYPVTTELQNRCVNMIAHLFNTPV  112 (356)
Q Consensus        40 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~-~~~~~------~~~~~~~le~~~~~~la~l~g~~~  112 (356)
                      .++.+.+.+...... ..+++....+.. ++.+.+++.+.+... ...+.      ..+....+|+.+++++++++|++.
T Consensus         9 ~~i~~~~~~~~~~~~-~~i~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~   86 (407)
T 2dkj_A            9 EALFELIALEEKRQR-EGLELIASENFV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW   86 (407)
T ss_dssp             HHHHHHHHHHHHHHH-TSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHHHHhh-cceeeccCCCCC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc
Confidence            345555554443221 222333333322 678889888777531 11111      112223566667789999999874


Q ss_pred             CCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH---HHHHHhhCCeeEEEEe--cCCc
Q 018437          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW---EKFARYFEVELKEVKL--EEGY  187 (356)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~---~~~~~~~G~~v~~v~~--~~~~  187 (356)
                            ..+++++|++|+..++.++..+             +++|+++.++|.++   ..+++..|..++.+++  ++++
T Consensus        87 ------~~i~~~sGt~a~~~~~~~~~~~-------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  147 (407)
T 2dkj_A           87 ------ANVQPHSGSQANMAVYMALMEP-------------GDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDT  147 (407)
T ss_dssp             ------EECCCSSHHHHHHHHHHHHCCT-------------TCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTT
T ss_pred             ------ceEEecchHHHHHHHHHHhcCC-------------CCEEEEecccccCccchHHHHHhcCceEEEEecCCCccc
Confidence                  1244555678999998887432             46899999999887   4556666775555555  4335


Q ss_pred             cccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCC
Q 018437          188 YVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP  266 (356)
Q Consensus       188 ~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  266 (356)
                      +.+|+++|++++++ ++++|+++.|+|+  .+.|+++|.++|+++      |+++|+|++|+.+..+  .+.....  ..
T Consensus       148 ~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~~--~~~~~~~--~~  215 (407)
T 2dkj_A          148 ELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEV------GAYLVVDMAHFAGLVA--AGLHPNP--LP  215 (407)
T ss_dssp             SSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHH------TCEEEEECTTTHHHHH--TTCSCCC--TT
T ss_pred             CccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHc------CCEEEEEccccccccc--cCccCCc--cc
Confidence            89999999999985 8899988888886  778999999999999      9999999999874432  1111111  12


Q ss_pred             CceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHH
Q 018437          267 LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFIS  346 (356)
Q Consensus       267 ~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~  346 (356)
                      ..|.++.++||++.+|.+ |+++.++++.. +.+..... . +      ..++.+....+++.+++..+..++++++.++
T Consensus       216 ~~di~~~s~sK~l~g~~~-G~~~~~~~~~~-~~l~~~~~-~-~------~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  285 (407)
T 2dkj_A          216 YAHVVTSTTHKTLRGPRG-GLILSNDPELG-KRIDKLIF-P-G------IQGGPLEHVIAGKAVAFFEALQPEFKEYSRL  285 (407)
T ss_dssp             TCSEEEEESSGGGCCCSC-EEEEESCHHHH-HHHHHHHT-T-T------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             cccEEEEeccccCCCCCc-eEEEECCHHHH-HHHHhhhc-c-c------ccCCCcHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            479999999999888887 99988643332 11111000 0 0      0133334334466677776545677777777


Q ss_pred             HHhccCcc
Q 018437          347 SLKVCPFL  354 (356)
Q Consensus       347 ~~~~a~~l  354 (356)
                      ..+++++|
T Consensus       286 ~~~~~~~l  293 (407)
T 2dkj_A          286 VVENAKRL  293 (407)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776655

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.83  E-value=1.9e-19  Score=170.24  Aligned_cols=249  Identities=13%  Similarity=0.070  Sum_probs=166.5

Q ss_pred             ccccccCC-CChHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCC-CCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           59 NLASFVTT-WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        59 ~l~~~~~~-~~~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      +|....+. ++++.+.+++.+.+.. ....|.. ++..    ++++++++++|+ ++     ..+++|+||++++..++.
T Consensus        34 ~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~----~l~~~la~~~g~~~~-----~~i~~~~g~t~a~~~~~~  103 (367)
T 3euc_A           34 KLDAMENPYRLPPALRSELAARLGEVALNRYPV-PSSE----ALRAKLKEVMQVPAG-----MEVLLGNGSDEIISMLAL  103 (367)
T ss_dssp             ECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-CCHH----HHHHHHHHHHTCCTT-----CEEEEEEHHHHHHHHHHH
T ss_pred             EccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CcHH----HHHHHHHHHhCCCCc-----ceEEEcCCHHHHHHHHHH
Confidence            44444433 3457888888877653 2222222 3333    555668888898 33     348999999999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCc
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTL  214 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~  214 (356)
                      ++.++             +++|+++.++|..+...++..|++++.+|+++ ++.+|+++|++++++ ++++|++++++||
T Consensus       104 ~~~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~np  169 (367)
T 3euc_A          104 AAARP-------------GAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA-DFTLDRGAMLAAMAEHQPAIVYLAYPNNP  169 (367)
T ss_dssp             HTCCT-------------TCEEEEEESCSCCSCHHHHTTTCEEEEEECCT-TSCCCHHHHHHHHHHHCCSEEEEESSCTT
T ss_pred             HHcCC-------------CCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC-CCCCCHHHHHHHhhccCCCEEEEcCCCCC
Confidence            76432             57899999999999999999999999999987 489999999999998 8999999999999


Q ss_pred             ccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       215 tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      ||.+.+   +++|.++|++++.    |+++|+|++|+.+..    ......+...+.+.+..+++|++..+.++|+++..
T Consensus       170 tG~~~~~~~l~~i~~~~~~~~~----~~~li~De~~~~~~~----~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~  241 (367)
T 3euc_A          170 TGNLFDAADMEAIVRAAQGSVC----RSLVVVDEAYQPFAQ----ESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGD  241 (367)
T ss_dssp             TCCCCCHHHHHHHHHHTBTTSC----BCEEEEECTTCCSSS----CCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEEC
T ss_pred             CCCCCCHHHHHHHHHhhhhcCC----CcEEEEeCcchhhcc----cchHHHHhhCCCEEEEecchhhcccccCceeeeeC
Confidence            999965   5555555655511    489999999986432    11111222335567778899996556778998874


Q ss_pred             CCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      + +.. +.+...    ..   .    ++.+.....++..+|+.  .+.+++..++..+++++|
T Consensus       242 ~-~~~-~~~~~~----~~---~----~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l  289 (367)
T 3euc_A          242 P-QWL-EQLDKV----RP---P----YNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRV  289 (367)
T ss_dssp             H-HHH-HHHGGG----CC---S----SCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH
T ss_pred             H-HHH-HHHHHh----CC---C----CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHH
Confidence            2 222 111110    00   1    12233334444455544  445666666666555544

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.83  E-value=2.8e-19  Score=169.56  Aligned_cols=212  Identities=13%  Similarity=0.008  Sum_probs=156.4

Q ss_pred             CCcccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           56 PRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        56 ~~~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      ..++|....+.. +++.+.+++.+.+. ....|....+..++++++.+++++.+|++.+   ...+++|+||++++..++
T Consensus        24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~---~~~i~~t~g~~~al~~~~   99 (376)
T 3ezs_A           24 RGLDLGIGEPQFETPKFIQDALKNHTH-SLNIYPKSAFEESLRAAQRGFFKRRFKIELK---ENELISTLGSREVLFNFP   99 (376)
T ss_dssp             CCCBCSSCCCCSCCCHHHHHHHHTTGG-GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCC---GGGEEEESSSHHHHHHHH
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHhhh-hcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC---HHHEEECcCcHHHHHHHH
Confidence            334565555443 45788888887763 3333444456788999999999999998431   145899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      .++..+           ..+++|+++.++|..+...++..|++++.+|++++ ..+++ +|++++.+++++|++++|+||
T Consensus       100 ~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~-~l~~~~~~~~~~v~~~~p~np  166 (376)
T 3ezs_A          100 SFVLFD-----------YQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKE-NDFTP-SLNEKELQEVDLVILNSPNNP  166 (376)
T ss_dssp             HHHTTT-----------CSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGG-GTSCC-CCCHHHHHHCSEEEECSSCTT
T ss_pred             HHHcCC-----------CCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCC-CCcch-hHHhhhccCCCEEEEcCCCCC
Confidence            887431           01468999999999999999999999999999764 34555 777778778899999999999


Q ss_pred             ccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc------CCCceEEEEcCCcCCC-CCcC
Q 018437          215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR------LPLVKSINVSGHKYGL-VYAG  284 (356)
Q Consensus       215 tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~------~~~~Ds~~~~~hK~l~-~P~g  284 (356)
                      ||.+.|   +++|.++|+++      ++++|+|++|+.+...- .+.......      ..+.+.+..+++|+++ .+.+
T Consensus       167 tG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r  239 (376)
T 3ezs_A          167 TGRTLSLEELISWVKLALKH------DFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLR  239 (376)
T ss_dssp             TCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGC
T ss_pred             cCCCCCHHHHHHHHHHHHHc------CcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecchhccCCccce
Confidence            999966   67778889999      99999999998755421 000001110      2456788889999984 5567


Q ss_pred             eeEEEEe
Q 018437          285 VGWVVWR  291 (356)
Q Consensus       285 ~g~l~~~  291 (356)
                      +|+++..
T Consensus       240 ~G~~~~~  246 (376)
T 3ezs_A          240 SGFIAGD  246 (376)
T ss_dssp             CEEEEEC
T ss_pred             eEEEeeC
Confidence            8988763

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.83  E-value=4.6e-20  Score=176.56  Aligned_cols=244  Identities=9%  Similarity=-0.012  Sum_probs=164.6

Q ss_pred             ChHHHHHHHHHHhcccC-C-C-----cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNY-V-D-----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~-~-~-----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      .++.+.+++.+.+.... . +     +...+...++++++++++++++|.+.      ..+++++|++|+..++.++..+
T Consensus        35 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~------~~i~~~sGt~a~~~a~~~~~~~  108 (405)
T 2vi8_A           35 VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH------ANVQPHSGAQANMAVYFTVLEH  108 (405)
T ss_dssp             CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCCT
T ss_pred             CCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc------eEEEecCcHHHHHHHHHHhcCC
Confidence            36788999887774221 1 1     11224567788889999999999874      1344455599999999887432


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHH-H--HHhhCC--eeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEK-F--ARYFEV--ELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTL  214 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~~-~--~~~~G~--~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~  214 (356)
                                   +++|+++.++|.++.. .  +...|.  .++.++++++++.+|+++|++++++ ++++|++ .+++.
T Consensus       109 -------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~  174 (405)
T 2vi8_A          109 -------------GDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA-AAAAY  174 (405)
T ss_dssp             -------------TCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC
T ss_pred             -------------CCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEE-eCCCC
Confidence                         5789999999987643 1  123444  6777777644589999999999986 8888776 44443


Q ss_pred             ccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCC
Q 018437          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (356)
Q Consensus       215 tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~  294 (356)
                       |...|+++|.++|+++      |+++|+|++|+.+..+.  +.....  ...+|.++.++||++++|.| |+++.++ +
T Consensus       175 -~~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~~~--~~~~~~--~~~~di~~~s~sK~~~g~~g-G~~~~~~-~  241 (405)
T 2vi8_A          175 -PRIIDFAKFREIADEV------GAYLMVDMAHIAGLVAA--GLHPNP--VPYAHFVTTTTHKTLRGPRG-GMILCQE-Q  241 (405)
T ss_dssp             -CSCCCHHHHHHHHHHH------TCEEEEECTTTHHHHHT--TSSCCS--TTTCSEEEEESSSTTCCCSC-EEEEECH-H
T ss_pred             -CccCCHHHHHHHHHHc------CCEEEEEcccccccccc--CcCCCc--cccCCEEEEeccccCCCCCC-eEEEEcH-H
Confidence             6777999999999999      99999999998544321  111111  23678889999999988888 9998753 2


Q ss_pred             CCccccccc-cCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          295 DLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       295 ~~~~~~~~~-~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      .. +.+... ..+         ..++.+....+++.++++.+..++++++.++..+++++|
T Consensus       242 ~~-~~l~~~~~~~---------~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l  292 (405)
T 2vi8_A          242 FA-KQIDKAIFPG---------IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL  292 (405)
T ss_dssp             HH-HHHHHHHTTT---------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHhhhccc---------ccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            22 221110 011         113444444566667777655567777777777776665

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.82  E-value=3.7e-19  Score=172.00  Aligned_cols=191  Identities=14%  Similarity=0.051  Sum_probs=141.5

Q ss_pred             cccccCCCC-hHHHHHHHHHHhcccCCCccc-CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH
Q 018437           60 LASFVTTWM-EPECDKLVMASINKNYVDMDE-YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        60 l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~-~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (356)
                      |..+.+..+ ++.+.+++.+.+..+.  |.. .++..    ++++.+++++|.+.       +++|+||++|+..++.++
T Consensus        21 l~~~~p~~~~p~~~~~a~~~~~~~~~--y~~~~~~~~----~l~~~la~~~~~~~-------v~~~~ggt~al~~~l~~l   87 (424)
T 2po3_A           21 LLVGRPNRIDRARLYERLDRALDSQW--LSNGGPLVR----EFEERVAGLAGVRH-------AVATCNATAGLQLLAHAA   87 (424)
T ss_dssp             EETTCCCCCCHHHHHHHHHHHHHHTC--CSSSCHHHH----HHHHHHHHHHTSSE-------EEEESCHHHHHHHHHHHH
T ss_pred             ccccCCCCCChHHHHHHHHHHHhcCC--cccCCHHHH----HHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHc
Confidence            334444433 4578888887776432  322 34444    45555888888753       899999999999999876


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccc
Q 018437          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (356)
                      . +             +++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+++   +++|.
T Consensus        88 ~-~-------------gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~  150 (424)
T 2po3_A           88 G-L-------------TGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGV---HLWGR  150 (424)
T ss_dssp             T-C-------------CSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEE---CGGGC
T ss_pred             C-C-------------CCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEE---CCCCC
Confidence            3 1             47899999999999999999999999999986458999999999998888888875   38999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCC--cCCCCCcCeeEEEEeCC
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~l~~~~~  293 (356)
                      +.++++|.++|+++      ++++|+|++|+.+.. + .. .  .+. ...|.++.|+|  |++.+ ...|+++.+++
T Consensus       151 ~~~l~~i~~la~~~------~~~li~Dea~~~g~~-~-~~-~--~~~-~~~di~~~S~sk~K~l~~-~~~G~~v~~~~  215 (424)
T 2po3_A          151 PCAADQLRKVADEH------GLRLYFDAAHALGCA-V-DG-R--PAG-SLGDAEVFSFHATKAVNA-FEGGAVVTDDA  215 (424)
T ss_dssp             CCCHHHHHHHHHHT------TCEEEEECTTCTTCE-E-TT-E--ETT-SSSSEEEEECCTTSSSCC-SSCEEEEESCH
T ss_pred             cCCHHHHHHHHHHc------CCEEEEECccccCCe-E-CC-e--ecc-cccCEEEEeCCCCCCccC-CCCeEEEeCCH
Confidence            99999999999999      999999999984322 1 11 1  111 11356666655  87754 66788877533

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.82  E-value=1.4e-19  Score=173.28  Aligned_cols=185  Identities=12%  Similarity=0.066  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HHHHHHHHHhc
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ  148 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~  148 (356)
                      +.+.+++.+.+..+.. +...+    ...++++.+++++|.+.       +++|+||++|+..++.++ ..+        
T Consensus        12 ~~v~~a~~~~~~~~~~-~~~g~----~~~~l~~~la~~~~~~~-------v~~~~ggt~al~~~~~~l~~~~--------   71 (394)
T 1o69_A           12 GNELKYIEEVFKSNYI-APLGE----FVNRFEQSVKDYSKSEN-------ALALNSATAALHLALRVAGVKQ--------   71 (394)
T ss_dssp             CCHHHHHHHHHHHTTT-SCTTH----HHHHHHHHHHHHHCCSE-------EEEESCHHHHHHHHHHHTTCCT--------
T ss_pred             HHHHHHHHHHHHcCCc-cCCCh----HHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCCC--------
Confidence            4566777766654321 11122    33455666888888743       899999999999999886 321        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh---CceEEEEecCCCcccccCCHHHHH
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFEDVKLLH  225 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~i~~I~  225 (356)
                           +++|+++.++|.++..+++..|++++.+|+++ ++.+|+++|++++++   ++++|++++   ++|...|+++|.
T Consensus        72 -----gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~  142 (394)
T 1o69_A           72 -----DDIVLASSFTFIASVAPICYLKAKPVFIDCDE-TYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIV  142 (394)
T ss_dssp             -----TCEEEEESSSCGGGTHHHHHTTCEEEEECBCT-TSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHH
T ss_pred             -----CCEEEECCCccHHHHHHHHHcCCEEEEEEeCC-CCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHH
Confidence                 46899999999999999999999999999985 589999999999987   788888775   899999999999


Q ss_pred             HHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCC
Q 018437          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (356)
Q Consensus       226 ~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~  294 (356)
                      ++|+++      ++++|+|++|+.+..+  .+. .. .....+|.++++.||.+ +|.++|++++++++
T Consensus       143 ~l~~~~------~~~li~Dea~~~g~~~--~~~-~~-~~~~~~~~~s~s~~K~l-~~~~~G~~~~~~~~  200 (394)
T 1o69_A          143 EICKEN------DIVLIEDAAEALGSFY--KNK-AL-GTFGEFGVYSYNGNKII-TTSGGGMLIGKNKE  200 (394)
T ss_dssp             HHHHHT------TCEEEEECTTCTTCEE--TTE-ET-TSSSSEEEEECCTTSSS-CCSSCEEEEESCHH
T ss_pred             HHHHHc------CCEEEEECcCccccee--CCc-cc-ccccCcEEEEEeCCccC-CCCCceEEEECCHH
Confidence            999999      9999999999843321  111 10 01236899999999976 57789999986543

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.82  E-value=1e-19  Score=175.48  Aligned_cols=191  Identities=12%  Similarity=0.104  Sum_probs=146.8

Q ss_pred             hHHHHHHHHHHhcccC-CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HHHHHHHHH
Q 018437           69 EPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRK  146 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~  146 (356)
                      ++.+.+++.+.+.... ..+....+..++.+++++.+++++|.+.       .+++++||+|+..++.++ ..+      
T Consensus        15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-------~i~~~~gt~al~~~~~~~~~~~------   81 (418)
T 2c81_A           15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPY-------CVPTTSGSTALMLALEALGIGE------   81 (418)
T ss_dssp             CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTCCT------
T ss_pred             CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCCC------
Confidence            4778888887776432 2233334445566778888999999873       678888999999999876 321      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHH
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~  226 (356)
                             +++|+++.++|.++...++..|++++.+|++++++.+|+++|++++++++++|++   +|++|.+.|+++|.+
T Consensus        82 -------gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~---~~~~G~~~~~~~i~~  151 (418)
T 2c81_A           82 -------GDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIP---VHLFGSMANMDEINE  151 (418)
T ss_dssp             -------TCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECC---BCCTTCCCCHHHHHH
T ss_pred             -------cCEEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEE---eCCcCCcccHHHHHH
Confidence                   4789999999999999999999999999998645899999999999888888875   458999999999999


Q ss_pred             HHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       227 i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      +|+++      ++++|+|++|+.+.. + ... ... ....++.+++++||+++++ ..|+++.+++
T Consensus       152 ~~~~~------~~~li~D~a~~~~~~-~-~~~-~~~-~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~  207 (418)
T 2c81_A          152 IAQEH------NLFVIEDCAQSHGSV-W-NNQ-RAG-TIGDIGAFSCQQGKVLTAG-EGGIIVTKNP  207 (418)
T ss_dssp             HHHHT------TCEEEEECTTCTTCE-E-TTE-ETT-SSSSEEEEECCTTSSSCSS-SCEEEEESCH
T ss_pred             HHHHC------CCEEEEECcccccCc-c-CCE-ecc-cccceEEEeccCCcccCCC-CeEEEEECCH
Confidence            99999      999999999987652 1 111 110 1223677777789998663 6677776543

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.82  E-value=2.9e-19  Score=168.31  Aligned_cols=188  Identities=16%  Similarity=-0.002  Sum_probs=141.4

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.+.....++  .++..    ++++++++++|+++     ..+++|+||++++..++.++          
T Consensus        40 ~~~~v~~a~~~~~~~~~~y~--~~~~~----~l~~~la~~~~~~~-----~~i~~~~g~t~al~~~~~~~----------   98 (361)
T 3ftb_A           40 IPKSFLNNIDEGIKNLGVYP--DVNYR----RLNKSIENYLKLKD-----IGIVLGNGASEIIELSISLF----------   98 (361)
T ss_dssp             SCHHHHTTHHHHHHGGGSCC--CTTCH----HHHHHHHHHHTCCS-----CEEEEESSHHHHHHHHHTTC----------
T ss_pred             CCHHHHHHHHHHHHHhcCCC--CccHH----HHHHHHHHHhCCCc-----ceEEEcCCHHHHHHHHHHHc----------
Confidence            45788888877765422222  23333    55666888888875     34899999999999988754          


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLL  224 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I  224 (356)
                             ++|+++.++|..+...++..|++++.+|++++ +.+|+++|++++++ +++|++++|+||||.+.|   +++|
T Consensus        99 -------d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i  169 (361)
T 3ftb_A           99 -------EKILIIVPSYAEYEINAKKHGVSVVFSYLDEN-MCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHV  169 (361)
T ss_dssp             -------SEEEEEESCCTHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHH
T ss_pred             -------CcEEEecCChHHHHHHHHHcCCeEEEeecCcc-cCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHH
Confidence                   47999999999999999999999999999874 68889999999988 999999999999999965   6678


Q ss_pred             HHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc-cCCCceEEEEcCCcCCC-CCcCeeEEEEeCC
Q 018437          225 HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTK  293 (356)
Q Consensus       225 ~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~~  293 (356)
                      .++|+++      |+++|+|++|+.+...  ........ .....+.+..+.+|.++ .+.++|++++.++
T Consensus       170 ~~~~~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~  232 (361)
T 3ftb_A          170 LKLAEEK------KKTIIIDEAFIEFTGD--PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNK  232 (361)
T ss_dssp             HHHHHHH------TCEEEEECSSGGGTCC--TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCH
T ss_pred             HHHhhhc------CCEEEEECcchhhcCC--cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCH
Confidence            8888899      9999999999876552  11111111 12233466678999875 4467788875543

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.82  E-value=1.4e-19  Score=171.73  Aligned_cols=184  Identities=13%  Similarity=0.061  Sum_probs=140.8

Q ss_pred             HHHHHhcccCCCcccCcchHHHHHHHHHHHHHHh-CCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 018437           75 LVMASINKNYVDMDEYPVTTELQNRCVNMIAHLF-NTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD  153 (356)
Q Consensus        75 ~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~  153 (356)
                      .+.+.+......|...++..+++++    +++++ ++++     ..+++|+||++|+..++.++.++             
T Consensus        47 ~~~~~~~~~~~~y~~~~g~~~l~~~----la~~~~~~~~-----~~v~~~~g~~~a~~~~~~~l~~~-------------  104 (375)
T 3op7_A           47 DFYKKLQGTKLNYGWIEGSPAFKKS----VSQLYTGVKP-----EQILQTNGATGANLLVLYSLIEP-------------  104 (375)
T ss_dssp             HHHHHHHTSCCSSCCTTCCHHHHHH----HHTTSSSCCG-----GGEEEESHHHHHHHHHHHHHCCT-------------
T ss_pred             HHHHHHhcCCcCCCCCCChHHHHHH----HHHHhccCCh-----hhEEEcCChHHHHHHHHHHhcCC-------------
Confidence            3334444444445555566666666    56655 3444     34899999999999999887542             


Q ss_pred             CCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHHHHHHH
Q 018437          154 KPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLT  229 (356)
Q Consensus       154 ~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~  229 (356)
                      +++|+++.++|.++...++..|++++.+|++. +++.+|+++|++++++++++|++++++||+|.+.|   +++|.++|+
T Consensus       105 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~  184 (375)
T 3op7_A          105 GDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIAS  184 (375)
T ss_dssp             TCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence            57999999999999999999999999999974 34789999999999999999999999999999999   999999999


Q ss_pred             HhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      +|      |+++++|++|+.+...   +. .........+.+..+++|.++ ...++|+++.
T Consensus       185 ~~------~~~li~De~~~~~~~~---~~-~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~  236 (375)
T 3op7_A          185 EV------GAYILSDEVYRSFSEL---DV-PSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAA  236 (375)
T ss_dssp             TT------TCEEEEECCSCCCSSS---CC-CCHHHHCTTEEEEEESSSSSSCGGGCCEEEEC
T ss_pred             Hc------CCEEEEEccccccccc---CC-CchhhhcCCEEEEeEChhhcCCcccceEEEEe
Confidence            99      9999999999875441   10 111112344567778999985 3456788876

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.82  E-value=2.1e-20  Score=176.13  Aligned_cols=251  Identities=12%  Similarity=0.031  Sum_probs=170.2

Q ss_pred             CCCChHHHHHHHHHHhccc--CC--Cccc---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCh-hHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKN--YV--DMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS-SEAIMLAGLA  136 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~--~~--~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Gg-t~a~~~al~~  136 (356)
                      +.++++.+.+++.+.+...  .+  .+..   +++...+.+++++++++++|++..    ..+++|+|+ ++|+..++.+
T Consensus        11 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~----~~v~~~~g~gt~al~~~~~~   86 (360)
T 1w23_A           11 PSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND----YQILFLQGGASLQFTMLPMN   86 (360)
T ss_dssp             SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEECCcchHHHHHHHHH
Confidence            3355678899988877531  11  1111   556677888999999999999621    248899998 9999998887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHH-HHhhCceEEEEecCCCcc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVE-LVDENTICVAAILGSTLT  215 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~-~i~~~~~~v~~~~~~~~t  215 (356)
                      +..+        |  ..+++|+++.++|+++. .++..| +++.+|++++++.+|+++|++ ++++++++|++++++|||
T Consensus        87 l~~~--------~--~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~npt  154 (360)
T 1w23_A           87 LLTK--------G--TIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIY  154 (360)
T ss_dssp             HCCT--------T--CEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTT
T ss_pred             hcCC--------C--CcccEEEecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCc
Confidence            6431        1  11347888888887744 456779 999999975346789999999 888889999999999999


Q ss_pred             cccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCC
Q 018437          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       216 G~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~  295 (356)
                      |.+.|  +|   ++++      |+++++|++|+.+..+       .++.  ..|.++.++||++ +|.|+|+++++++ .
T Consensus       155 G~~~~--~i---~~~~------~~~li~D~a~~~~~~~-------~~~~--~~di~~~s~sK~~-~~~G~G~~~~~~~-~  212 (360)
T 1w23_A          155 GTQYQ--NF---PEIN------HAPLIADMSSDILSRP-------LKVN--QFGMIYAGAQKNL-GPSGVTVVIVKKD-L  212 (360)
T ss_dssp             TEECS--SC---CCCC------SSCEEEECTTTTTSSC-------CCGG--GCSEEEEETTTTT-SCTTCEEEEEEHH-H
T ss_pred             ceecc--cc---cccC------CceEEEechhhcCCCC-------cCcc--cCCEEEEEccccc-CCCCcEEEEEcHH-H
Confidence            99865  33   3367      9999999999875442       1222  2388999999987 5889999998753 2


Q ss_pred             CccccccccCCCCC-CC--CCccccCCCChhHHHHHHHHHHHhCHH-HHHHHHHHHHhccCcc
Q 018437          296 LPDELVFHINYLGS-DQ--PTFTLNFSKGSSQIIAQYYQFIRLGFE-EITFTFISSLKVCPFL  354 (356)
Q Consensus       296 ~~~~~~~~~~~~~~-~~--~~~~~~~tr~~~~~~~~~~~l~~lg~~-G~~~~~~~~~~~a~~l  354 (356)
                      . +.+.....+... ..  ......++.+....+++..+++.+..+ +++++.++..++++++
T Consensus       213 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l  274 (360)
T 1w23_A          213 L-NTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKII  274 (360)
T ss_dssp             H-CSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             H-hhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            1 111110011000 00  000112566666567777778776555 6777777777766654

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.82  E-value=2.8e-19  Score=172.56  Aligned_cols=199  Identities=11%  Similarity=-0.013  Sum_probs=147.7

Q ss_pred             ChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCC--CCCCCCCCCeEEeCChhHHHHHHHHHH--HHHHH
Q 018437           68 MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNT--PVADDKTAVGVGTVGSSEAIMLAGLAF--KRKWQ  142 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~t~Ggt~a~~~al~~~--~~~~~  142 (356)
                      +++.+.+++.+.+..+ ...|....+..++++++.+++....+.  +++   ...+++|+||++|+..++..+  .++  
T Consensus        68 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~---~~~i~~t~G~t~al~~~~~~~~~~~~--  142 (420)
T 4f4e_A           68 LLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAG---RVVTAQALGGTGALKIGADFLRTLNP--  142 (420)
T ss_dssp             CCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT---CEEEEEEEHHHHHHHHHHHHHHHHCT--
T ss_pred             CcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccC---ceEEEECCccHHHHHHHHHHHHHhCC--
Confidence            3478999888877652 234555567788888877777654432  221   014899999999999985433  221  


Q ss_pred             HHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEe-cCCccccCHHHHHHHHh---hCceEEEEecCCCccccc
Q 018437          143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEF  218 (356)
Q Consensus       143 ~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~  218 (356)
                                 +++|+++.++|.++...++..|++++.+|+ +++++.+|+++|+++++   ++++++++++++||||.+
T Consensus       143 -----------gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~  211 (420)
T 4f4e_A          143 -----------KAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVD  211 (420)
T ss_dssp             -----------TCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCC
T ss_pred             -----------CCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC
Confidence                       578999999999999999999999999998 44458999999999998   578899999999999998


Q ss_pred             ---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc---c-cCCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          219 ---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD---F-RLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       219 ---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~---~-~~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                         +++++|.++|+++      |+++++|++|+++...  .......   + .....+.+..|.+|.++ ....+|++++
T Consensus       212 ~~~~~l~~i~~~~~~~------~~~li~De~y~~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  283 (420)
T 4f4e_A          212 LNDAQWAQVVEVVKAR------RLVPFLDIAYQGFGES--IEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSI  283 (420)
T ss_dssp             CCHHHHHHHHHHHHHH------TCEEEEEESCTTSSSC--TTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHC------CcEEEEccccccccCC--cchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEE
Confidence               4567899999999      9999999999876542  0000111   1 12345677778999875 3456899875

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.82  E-value=8.8e-20  Score=174.61  Aligned_cols=188  Identities=15%  Similarity=0.063  Sum_probs=139.8

Q ss_pred             ChHHHHHHHHHHhcccCCCcc--cCc-chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDMD--EYP-VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~--~~~-~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      +++.+.+++.+.++.....+.  .++ +......++++.+++++|++.       .+++++|++++..++.++..+    
T Consensus        60 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGs~a~~~~~~~~~~~----  128 (401)
T 1fc4_A           60 NHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMED-------AILYSSCFDANGGLFETLLGA----  128 (401)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHTTHHHHCCT----
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCc-------EEEeCChHHHHHHHHHHHcCC----
Confidence            357888888877654221111  111 113455677788999998862       466677799999888776432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCccccc
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEF  218 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~  218 (356)
                               +++|+++.++|.++...++..|++++.+|.      +|+++|++++++      ++++|++++++||||.+
T Consensus       129 ---------gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~  193 (401)
T 1fc4_A          129 ---------EDAIISDALNHASIIDGVRLCKAKRYRYAN------NDMQELEARLKEAREAGARHVLIATDGVFSMDGVI  193 (401)
T ss_dssp             ---------TCEEEEETTCCHHHHHHHHTSCSEEEEECT------TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEE
T ss_pred             ---------CCEEEEcchhHHHHHHHHHHcCCceEEECC------CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCC
Confidence                     468999999999998889988999887762      478999998875      78999999999999999


Q ss_pred             CCHHHHHHHHHHhhhccCCCCcEEEecccc-cccccccCCCC-c--ccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASG-GFIAPFLYPDL-E--WDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       219 ~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~-~~~~~~~~~~~-~--~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      .|+++|.++|+++      ++++|+|++|+ ++..+  .... .  .++ .+++|.++.++||+++++.| |+++.+
T Consensus       194 ~~~~~i~~l~~~~------~~~li~De~~~~g~~~~--~g~~~~~~~~~-~~~~di~~~s~sK~~~~~~g-G~~~~~  260 (401)
T 1fc4_A          194 ANLKGVCDLADKY------DALVMVDDSHAVGFVGE--NGRGSHEYCDV-MGRVDIITGTLGKALGGASG-GYTAAR  260 (401)
T ss_dssp             CCHHHHHHHHHHT------TEEEEEECTTTTTTSST--TSCCHHHHTTC-TTCCSEEEEESSSTTCSSSC-EEEEEC
T ss_pred             CCHHHHHHHHHHc------CCEEEEECcccccccCC--CCCccHHHcCC-CcCCcEEEecchhhccCCCC-EEEEcC
Confidence            9999999999999      99999999996 53311  0111 0  122 23679999999999967776 888874

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.82  E-value=1.9e-19  Score=172.71  Aligned_cols=159  Identities=16%  Similarity=0.113  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH--
Q 018437           94 TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA--  171 (356)
Q Consensus        94 ~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~--  171 (356)
                      .....++++++++++|.+.       .+++++|++|+..++.++..+             +++|+++.++|.++...+  
T Consensus        63 ~~~~~~l~~~la~~~g~~~-------~i~~~sG~~a~~~~l~~~~~~-------------gd~vi~~~~~~~~~~~~~~~  122 (398)
T 2rfv_A           63 NPTTDALEKKLAVLERGEA-------GLATASGISAITTTLLTLCQQ-------------GDHIVSASAIYGCTHAFLSH  122 (398)
T ss_dssp             CHHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESSSCHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCCcccHHHHHHH
Confidence            3455678888999999863       677788899999999887432             578999999999887776  


Q ss_pred             --HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccc
Q 018437          172 --RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG  249 (356)
Q Consensus       172 --~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~  249 (356)
                        +..|++++.+|++      |+++|++++++++++|++++++||+|.+.|+++|.++|+++      |+++|+|++|+.
T Consensus       123 ~~~~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~  190 (398)
T 2rfv_A          123 SMPKFGINVRFVDAA------KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ------GALLVVDNTFMS  190 (398)
T ss_dssp             HHHHTTCEEEEECTT------SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHT------TCEEEEECTTTC
T ss_pred             HHHHcCCEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCcc
Confidence              7779999888864      79999999998999999999999999999999999999999      999999999986


Q ss_pred             ccccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      +..+    . ...   .++|.++.++||++++|.+  +|+++.++
T Consensus       191 ~~~~----~-~~~---~~~di~~~s~sK~~~~~g~~~~G~~~~~~  227 (398)
T 2rfv_A          191 PYCQ----Q-PLQ---LGADIVVHSVTKYINGHGDVIGGIIVGKQ  227 (398)
T ss_dssp             TTTC----C-GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred             cccC----C-chh---hCCcEEEEeCcccccCCCCceEEEEEECH
Confidence            5441    1 122   2689999999999888876  69988764

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.82  E-value=2e-19  Score=172.46  Aligned_cols=183  Identities=15%  Similarity=0.040  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HHHHHHHHHhc
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ  148 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~  148 (356)
                      +.+.+++.+.+..+  .+...+..    .++++.+++++|.+.       .+++++|++|+..++.++ ..+        
T Consensus        44 ~~v~~a~~~~~~~~--~y~~~~~~----~~l~~~la~~~~~~~-------~v~~~~Gt~a~~~~l~~~~~~~--------  102 (399)
T 2oga_A           44 AETDAAIARVLDSG--RYLLGPEL----EGFEAEFAAYCETDH-------AVGVNSGMDALQLALRGLGIGP--------  102 (399)
T ss_dssp             HHHHHHHHHHHHHT--CCSSSHHH----HHHHHHHHHHTTSSE-------EEEESCHHHHHHHHHHHTTCCT--------
T ss_pred             HHHHHHHHHHHhcC--CCCCchhH----HHHHHHHHHHHCCCe-------EEEecCHHHHHHHHHHHhCCCC--------
Confidence            67888887776543  22223333    355566888888863       688899999999998876 221        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHH
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL  228 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~  228 (356)
                           +++|+++.++|.++..+++..|++++.+|++++++.+|+++|++++++++++|+   ++|++|.+.|+++|.++|
T Consensus       103 -----gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~  174 (399)
T 2oga_A          103 -----GDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELA  174 (399)
T ss_dssp             -----TCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred             -----cCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHH
Confidence                 468999999999999999999999999999864589999999999988887776   578999999999999999


Q ss_pred             HHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCC--cCCCCCcCeeEEEEeCC
Q 018437          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~l~~~~~  293 (356)
                      +++      ++++|+|++|+.+...  ...   .+. ...|.++.|+|  |+++.|...|+++.+++
T Consensus       175 ~~~------~~~li~Dea~~~g~~~--~~~---~~~-~~~di~~~S~~~sK~~~~~G~~g~~~~~~~  229 (399)
T 2oga_A          175 DRH------GLHIVEDAAQAHGARY--RGR---RIG-AGSSVAAFSFYPGKNLGCFGDGGAVVTGDP  229 (399)
T ss_dssp             HHH------TCEECEECTTCTTCEE--TTE---ETT-CTTCEEEEECCTTSSSCCSSCCEEEEESCH
T ss_pred             HHc------CCEEEEECcccccCcc--CCe---ecc-cccCEEEEeCCCCccCCcCCceEEEEeCCH
Confidence            999      9999999999865331  111   111 12588888885  98865335677776544

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.82  E-value=4.3e-19  Score=169.45  Aligned_cols=193  Identities=12%  Similarity=0.021  Sum_probs=137.6

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      ..++.+.+++.+.+....  +...+...    ++++.+++++|.+.       .+++++||+|+..++.+++...     
T Consensus        12 ~~~~~~~~a~~~~~~~~~--~~~~~~~~----~l~~~la~~~~~~~-------~i~~~sGt~a~~~al~~~~~~~-----   73 (390)
T 3b8x_A           12 TWDDLEYKAIQSVLDSKM--FTMGEYVK----QYETQFAKTFGSKY-------AVMVSSGSTANLLMIAALFFTK-----   73 (390)
T ss_dssp             CCCHHHHHHHHHHHHHTC--CSSCHHHH----HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTSSS-----
T ss_pred             CCCHHHHHHHHHHHHcCC--CCCChHHH----HHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHHhhh-----
Confidence            445777888877775432  22333444    45556888888863       7899999999999988762100     


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHH
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~  226 (356)
                      ..+ -..+++|+++.++|.++...++..|++++.+|++++++.+|+++|++++++++++|+++   +++|.+.|+++|.+
T Consensus        74 ~~~-~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~g~~~~~~~i~~  149 (390)
T 3b8x_A           74 KPR-LKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTV---NLLGNPNNFDEINK  149 (390)
T ss_dssp             SCS-CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEE---CGGGCCCCHHHHHH
T ss_pred             hcC-CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEE---CCccChhhHHHHHH
Confidence            000 01246899999999999999999999999999987558999999999999888888876   36788999999999


Q ss_pred             HHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       227 i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +|+++      ++++|+|++|+.+..+  .. ..... ...+.+++..+.|.+.+|.| |+++.++
T Consensus       150 l~~~~------~~~li~D~a~~~g~~~--~~-~~~g~-~~~~~~~s~~~~k~~~~g~g-G~~~~~~  204 (390)
T 3b8x_A          150 IIGGR------DIILLEDNCESMGATF--NN-KCAGT-FGLMGTFSSFYSNHIATMEG-GCIVTDD  204 (390)
T ss_dssp             HHTTS------CCEEEEECTTCTTCEE--TT-EETTS-SSSEEEEECCTTSSSCSSSC-EEEEESC
T ss_pred             HHHHc------CCEEEEECcCcccCEE--CC-ccccc-ccceEEEEccCCCCCccCCc-eEEEeCC
Confidence            99999      9999999999855442  11 01111 12233444434444556666 8888765

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.82  E-value=5.2e-19  Score=170.99  Aligned_cols=206  Identities=16%  Similarity=0.075  Sum_probs=154.7

Q ss_pred             ccccccCC---CChHHHHHHHHHHhccc---CCCcccCcchHHHHHHHHHHHHHHhCCC-CCCCCCCCeEEeCChhHHHH
Q 018437           59 NLASFVTT---WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAIM  131 (356)
Q Consensus        59 ~l~~~~~~---~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~Ggt~a~~  131 (356)
                      +|..+.+.   .+++.+.+++.+.++.+   ...|....+..++++++.+++.+.+|++ .+.   ..+++|+|+++++.
T Consensus        47 dl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~---~~v~~t~G~~~al~  123 (425)
T 1vp4_A           47 SFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDE---DNLIFTVGSQQALD  123 (425)
T ss_dssp             ECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCG---GGEEEEEHHHHHHH
T ss_pred             eCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCc---ccEEEeccHHHHHH
Confidence            45444433   24578888888777543   2344444567889999888888877954 211   35899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh--------Cc
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE--------NT  203 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~--------~~  203 (356)
                      .++.++.++             +++|+++.++|..+...++..|++++.+|++++ + +|+++|++++++        ++
T Consensus       124 ~~~~~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-~-~d~~~l~~~l~~~~~~~~~~~~  188 (425)
T 1vp4_A          124 LIGKLFLDD-------------ESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-G-MDLNVLERKLSEFDKNGKIKQV  188 (425)
T ss_dssp             HHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCGGGE
T ss_pred             HHHHHhCCC-------------CCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC-C-CCHHHHHHHHHhhhhcccCCCc
Confidence            998877432             478999999999999999999999999999864 4 999999999976        67


Q ss_pred             eEE-EEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc---cCCCceEEEEcCC
Q 018437          204 ICV-AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF---RLPLVKSINVSGH  276 (356)
Q Consensus       204 ~~v-~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~---~~~~~Ds~~~~~h  276 (356)
                      ++| ++++++||||.+.|   +++|.++|+++      ++++++|++|+.+...   ......+   ...+.+.+..+++
T Consensus       189 ~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~~i~~~s~s  259 (425)
T 1vp4_A          189 KFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY------DLFIVEDDPYGALRYE---GETVDPIFKIGGPERVVLLNTFS  259 (425)
T ss_dssp             EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECSSTTCBCS---SCCCCCHHHHHCTTTEEEEEEST
T ss_pred             eEEEECCCCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEECCCccccCC---CCCCcCHHHhCCCCCEEEEeccc
Confidence            887 57899999999965   67899999999      9999999999875431   1111111   1224567788899


Q ss_pred             cCCCCCcCeeEEEEe
Q 018437          277 KYGLVYAGVGWVVWR  291 (356)
Q Consensus       277 K~l~~P~g~g~l~~~  291 (356)
                      |+++....+|+++.+
T Consensus       260 K~~~~G~r~G~~~~~  274 (425)
T 1vp4_A          260 KVLAPGLRIGMVAGS  274 (425)
T ss_dssp             TTTCGGGCEEEEECC
T ss_pred             cccccccceEEEeeC
Confidence            998733457999875

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.81  E-value=9.9e-19  Score=163.14  Aligned_cols=184  Identities=14%  Similarity=0.079  Sum_probs=142.9

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +++|.+.+++.+..... ..| ..++..    ++++.+++++|+++     ..+++|+|+++++..++.++  +      
T Consensus        29 ~~~~~v~~a~~~~~~~~-~~y-~~~~~~----~lr~~la~~~~~~~-----~~i~~t~G~~~~l~~~~~~~--~------   89 (337)
T 3p1t_A           29 AVEPRVQAAIAAAAARI-NRY-PFDAEP----RVMRKLAEHFSCPE-----DNLMLVRGIDECFDRISAEF--S------   89 (337)
T ss_dssp             CCCHHHHHHHHHHGGGT-TSC-CTTHHH----HHHHHHHHHHTSCG-----GGEEEESHHHHHHHHHHHHS--T------
T ss_pred             CCCHHHHHHHHHhhhhh-ccC-CCCchH----HHHHHHHHHhCcCH-----HHEEEeCCHHHHHHHHHHhc--C------
Confidence            45678888888776532 222 233433    45566888889875     34899999999999888765  2      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHH
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~  226 (356)
                             +++|+++.++|.++...++..|++++.+|++++ +.+|+++|+++  .++++|++++|+||||.+.|+++|.+
T Consensus        90 -------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~  159 (337)
T 3p1t_A           90 -------SMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDD-LLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELDQ  159 (337)
T ss_dssp             -------TSEEEEESSSCSHHHHHHTTSCCEEEEECBCTT-SSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             -------CCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence                   579999999999999999999999999999864 89999999887  46789999999999999999999999


Q ss_pred             HHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       227 i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      +|+++      ++ +++|++|+.+...   .  .........+.+..+++|+++ .+.++|+++..
T Consensus       160 l~~~~------~~-~ivDea~~~~~~~---~--~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~  213 (337)
T 3p1t_A          160 LRQRA------GK-LLIDETYVDYSSF---R--ARGLAYGENELVFRSFSKSYGLAGLRLGALFGP  213 (337)
T ss_dssp             HHHHC------SE-EEEECTTGGGSSC---S--SSCCCCBTTEEEEEESSSTTCCTTTCCEEEECC
T ss_pred             HHHhC------Cc-EEEECCChhhccc---c--ccccccCCCEEEEeeCchhccCcchheEEEEeC
Confidence            99999      86 6669999864321   1  111223356788889999985 55678988764

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.81  E-value=6.2e-20  Score=187.99  Aligned_cols=225  Identities=12%  Similarity=-0.075  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH-HHhhC
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF-ARYFE  175 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~-~~~~G  175 (356)
                      -.++++.+++++|.+.      ..++++|++++|..++.++..+             +++|+++.+.|.++... +...|
T Consensus       175 i~e~e~~lA~~~gae~------~i~v~nGtt~an~~ai~al~~p-------------GD~VLv~~~~H~S~~~~~~~l~G  235 (730)
T 1c4k_A          175 AVAAEKHAARVYNADK------TYFVLGGSSNANNTVTSALVSN-------------GDLVLFDRNNHKSVYNSALAMAG  235 (730)
T ss_dssp             HHHHHHHHHHHTTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHCCCc------EEEECCHHHHHHHHHHHHhcCC-------------CCEEEEcCCchHHHHHHHHHHCC
Confidence            4467778999999974      2567788889999999887543             57999999999999888 88889


Q ss_pred             CeeEEEEecCCc----cccCHHHH-----HHHHhhC------c----eEEEEecCCCcccccCCHHHHHHHHHHhhhccC
Q 018437          176 VELKEVKLEEGY----YVMNPVKA-----VELVDEN------T----ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETG  236 (356)
Q Consensus       176 ~~v~~v~~~~~~----~~~d~~~L-----~~~i~~~------~----~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~  236 (356)
                      ++++.++.+.++    +.+|+++|     +++++++      +    ++|++++| |++|.+.|+++|+++|+++     
T Consensus       236 a~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~-----  309 (730)
T 1c4k_A          236 GRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHL-----  309 (730)
T ss_dssp             CEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGG-----
T ss_pred             CEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHc-----
Confidence            999999875322    45788888     9998765      4    78889988 4899999999999999999     


Q ss_pred             CCCcEEEecccccccccccCCC----CcccccCCCce----EEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCC
Q 018437          237 WDTPIHVDAASGGFIAPFLYPD----LEWDFRLPLVK----SINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLG  308 (356)
Q Consensus       237 ~~~~l~vD~a~~~~~~~~~~~~----~~~~~~~~~~D----s~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~  308 (356)
                       ++++|+|+||+.++.  +.+.    ...+....++|    .++.|+||++.+|.++|+++++++.....     ..+..
T Consensus       310 -g~~livDeAh~~~~~--f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~-----~~~i~  381 (730)
T 1c4k_A          310 -CDYIEFDSAWVGYEQ--FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQ-----LRYCD  381 (730)
T ss_dssp             -BSEEEEECTTCCGGG--SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTS-----TTCCC
T ss_pred             -CCeEEEEcccccccc--cCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCc-----ccccC
Confidence             999999999975422  1111    11222223677    89999999999999999999887532100     00000


Q ss_pred             CCC----CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          309 SDQ----PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       309 ~~~----~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ...    ......+|.+...++++-+++..+..++-++++++..++++++
T Consensus       382 ~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~l  431 (730)
T 1c4k_A          382 HKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEA  431 (730)
T ss_dssp             HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            000    0001124666666777777888777644456667777776655

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.81  E-value=1e-18  Score=170.46  Aligned_cols=207  Identities=15%  Similarity=0.082  Sum_probs=156.1

Q ss_pred             cccccccCCC---ChHHHHHHHHHHhccc---CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHH
Q 018437           58 LNLASFVTTW---MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (356)
Q Consensus        58 ~~l~~~~~~~---~~~~v~~~i~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (356)
                      ++|.++.+..   +++.+.+++.+.+...   ...|....+..++++.+.+++.+.+|++ +.   ..+++|+|+++++.
T Consensus        79 i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~---~~v~~t~G~~~al~  154 (448)
T 3aow_A           79 ISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QD---NDIMITSGSQQALD  154 (448)
T ss_dssp             EECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TT---SEEEEESSHHHHHH
T ss_pred             EeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-Ch---hhEEEeCcHHHHHH
Confidence            3555555442   4567888887776542   1344445577889989888888888984 21   35899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh----h--CceE
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----E--NTIC  205 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~--~~~~  205 (356)
                      .++.++.++             +++|+++.++|..+...++..|++++.||++++ + +|+++|+++++    +  ++++
T Consensus       155 ~~~~~l~~~-------------Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~L~~~l~~~~~~~~~~k~  219 (448)
T 3aow_A          155 LIGRVFLNP-------------GDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE-G-MKVEILEEKLKELKSQGKKVKV  219 (448)
T ss_dssp             HHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHcCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC-C-CCHHHHHHHHhhhhccCCCCeE
Confidence            999887542             578999999999999999999999999999874 4 99999999997    5  7888


Q ss_pred             E-EEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc---ccccCCCceEEEEcCCcC
Q 018437          206 V-AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE---WDFRLPLVKSINVSGHKY  278 (356)
Q Consensus       206 v-~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~  278 (356)
                      | ++++++||||.+.+   +++|.++|+++      ++++++|++|+.+...   ....   ..+...+.+.+..+++|+
T Consensus       220 v~~~~~~~NPtG~~~~~~~l~~i~~la~~~------~~~lI~De~y~~~~~~---g~~~~~~~~~~~~~~vi~~~S~SK~  290 (448)
T 3aow_A          220 VYTVPTFQNPAGVTMNEDRRKYLLELASEY------DFIVVEDDPYGELRYS---GNPEKKIKALDNEGRVIYLGTFSKI  290 (448)
T ss_dssp             EEECCSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECSCTTCBCS---SCCCCCTGGGCTTSCEEEEEESTTT
T ss_pred             EEECCCCCCCcCCCCCHHHHHHHHHHHHHc------CCEEEEECCCccccCC---CCCCcCHHhcCCCCCEEEEccchhh
Confidence            7 46899999999865   56899999999      9999999999876541   1111   122222456677789999


Q ss_pred             CCCCcCeeEEEEeC
Q 018437          279 GLVYAGVGWVVWRT  292 (356)
Q Consensus       279 l~~P~g~g~l~~~~  292 (356)
                      ++....+|+++.++
T Consensus       291 ~~~GlriG~v~~~~  304 (448)
T 3aow_A          291 LAPGFRIGWMVGDP  304 (448)
T ss_dssp             TCGGGCCEEEEECH
T ss_pred             ccccccEEEEEeCH
Confidence            86333589998853

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.81  E-value=2.2e-19  Score=172.60  Aligned_cols=191  Identities=10%  Similarity=-0.084  Sum_probs=141.6

Q ss_pred             ChHHHHHHHHHHhcccCC---CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYV---DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~---~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      .+|.+.+++.+.+.....   .+....+......++++++++++|.+.       .+++++|++++..++.++.++    
T Consensus        74 ~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGt~a~~~~l~~~~~~----  142 (409)
T 3kki_A           74 NHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE-------CLLSQSGWNANVGLLQTICQP----  142 (409)
T ss_dssp             TCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT----
T ss_pred             CCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCe-------EEEecchHHHHHHHHHHhcCC----
Confidence            357888888877764221   111222333445567778999999874       566777889999998877542    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHH
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKL  223 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~  223 (356)
                               ++.|+++.++|.++...++..|++++.++.      +|+++|++++++ ++++|++++++||||.+.|+++
T Consensus       143 ---------gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~  207 (409)
T 3kki_A          143 ---------NTNVYIDFFAHMSLWEGARYANAQAHPFMH------NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE  207 (409)
T ss_dssp             ---------TCEEEEETTSCHHHHHHHHHTTCEEEEECT------TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred             ---------CCEEEECCCcCHHHHHHHHHcCCeEEEecC------CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence                     579999999999999999999998876653      589999999986 5899999999999999999999


Q ss_pred             HHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       224 I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      |.++|+++      |+++++|++|+++............+. ...+|.++.+.+|+++.+ | |+++.++
T Consensus       208 l~~la~~~------~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~-g-g~v~~~~  269 (409)
T 3kki_A          208 LVNISKEF------GCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR-A-GAIWCNN  269 (409)
T ss_dssp             HHHHHHHH------TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS-C-EEEEESS
T ss_pred             HHHHHHHc------CCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC-c-eEEEECH
Confidence            99999999      999999999987544211110000111 135789899999998655 3 7776643

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.81  E-value=1.8e-19  Score=172.93  Aligned_cols=158  Identities=16%  Similarity=0.081  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH---
Q 018437           95 ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA---  171 (356)
Q Consensus        95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~---  171 (356)
                      ....++++.+++++|.+.       .+++++|++|+..++.++..+             +++|+++.++|.++...+   
T Consensus        65 ~~~~~l~~~la~~~g~~~-------~i~~~sG~~a~~~~l~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~  124 (398)
T 1gc0_A           65 PTLNLLEARMASLEGGEA-------GLALASGMGAITSTLWTLLRP-------------GDEVLLGNTLYGCTFAFLHHG  124 (398)
T ss_dssp             HHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESSCCSHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhcC-------------CCEEEEeCCCchhHHHHHHHH
Confidence            344567777999999863       577777899999999887432             478999999999877765   


Q ss_pred             -HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccc
Q 018437          172 -RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (356)
Q Consensus       172 -~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~  250 (356)
                       ...|++++.++.+      |+++|++++++++++|++++++||+|.+.|+++|.++|+++      |+++|+|++|+.+
T Consensus       125 ~~~~g~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~~~~~~  192 (398)
T 1gc0_A          125 IGEFGVKLRHVDMA------DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH------GATVVVDNTYCTP  192 (398)
T ss_dssp             GGGGTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGG------TCEEEEECTTTHH
T ss_pred             HHHcCCEEEEECCC------CHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHc------CCEEEEECCCccc
Confidence             5678888888753      78999999998999999999999999999999999999999      9999999999876


Q ss_pred             cccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      ..+  .   +..   .++|.++.++||++++|.+  .|+++.++
T Consensus       193 ~~~--~---~~~---~~~d~~~~S~sK~~~~~~~~~~G~l~~~~  228 (398)
T 1gc0_A          193 YLQ--R---PLE---LGADLVVHSATKYLSGHGDITAGIVVGSQ  228 (398)
T ss_dssp             HHC--C---GGG---GTCSEEEEETTTTTTCSSSCCCEEEEECH
T ss_pred             ccC--C---chh---hCceEEEECCccccCCCCCCeEEEEEECh
Confidence            541  1   121   3689999999999988876  68888764

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.81  E-value=1.7e-19  Score=172.95  Aligned_cols=156  Identities=13%  Similarity=-0.014  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH----H
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----R  172 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~----~  172 (356)
                      .+++++.+++++|.+.       .++++||++|+..++.++..+             +++|+++.++|.++...+    +
T Consensus        68 ~~~l~~~la~~~g~~~-------~~~~~sGt~A~~~al~~~~~~-------------gd~Vi~~~~~y~~~~~~~~~~~~  127 (392)
T 3qhx_A           68 RTALEAALAAVEDAAF-------GRAFSSGMAAADCALRAMLRP-------------GDHVVIPDDAYGGTFRLIDKVFT  127 (392)
T ss_dssp             HHHHHHHHHHHTTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHHHTGG
T ss_pred             HHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEeCCCcchHHHHHHHHHH
Confidence            4466777999999863       789999999999999877432             578999999998776655    5


Q ss_pred             hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc
Q 018437          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~  252 (356)
                      ..|++++.+|++      |+++|++++++++++|++..++||+|.+.|+++|.++|+++      |+++|+|++|+.++.
T Consensus       128 ~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------g~~li~D~~~~~~~~  195 (392)
T 3qhx_A          128 GWNVEYTPVALA------DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADS------SAKVLVDNTFASPAL  195 (392)
T ss_dssp             GGTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTCTTT
T ss_pred             hcCcEEEEeCCC------CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHc------CCEEEEECCCccccc
Confidence            678899888864      89999999999999999999999999999999999999999      999999999975432


Q ss_pred             cccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                        ..   +..   .++|.++.|.||+++++.+  .|+++.++
T Consensus       196 --~~---~~~---~~~di~~~S~sK~lg~~g~~~~G~v~~~~  229 (392)
T 3qhx_A          196 --QQ---PLS---LGADVVLHSTTKYIGGHSDVVGGALVTND  229 (392)
T ss_dssp             --CC---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEESC
T ss_pred             --CC---hHH---hCCcEEEEcCccccCCCCCceEEEEEECc
Confidence              11   122   3789999999999866543  78888764

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.81  E-value=1.4e-18  Score=164.32  Aligned_cols=186  Identities=12%  Similarity=0.081  Sum_probs=139.3

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.+... ..|.. ++..    ++++.+++++|+++     ..+++|+|+++++..++.++  +       
T Consensus        38 ~~~~v~~a~~~~~~~~-~~y~~-~~~~----~l~~~la~~~~~~~-----~~v~~~~g~~~al~~~~~~~--~-------   97 (364)
T 1lc5_A           38 MPVSVKRALIDNLDCI-ERYPD-ADYF----HLHQALARHHQVPA-----SWILAGNGETESIFTVASGL--K-------   97 (364)
T ss_dssp             CCHHHHHHHHHTGGGG-GSCCC-TTCH----HHHHHHHHHHTSCG-----GGEEEESSHHHHHHHHHHHH--C-------
T ss_pred             CCHHHHHHHHHHHHHh-hcCCC-CCHH----HHHHHHHHHHCcCH-----HHEEECCCHHHHHHHHHHHc--C-------
Confidence            4578888888776532 22221 2334    45555777888865     34899999999999998876  2       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKL  223 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~  223 (356)
                            +++|+++.++|..+...++..|++++.+|+++ +++.+ ++++.+++.+++++|++++|+||||.+.|   +++
T Consensus        98 ------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~  170 (364)
T 1lc5_A           98 ------PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQA  170 (364)
T ss_dssp             ------CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred             ------CCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence                  46899999999999999999999999999875 22333 46566666677889999999999999988   899


Q ss_pred             HHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc-cCCCceEEEEcCCcCCCCC-cCeeEEE
Q 018437          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVY-AGVGWVV  289 (356)
Q Consensus       224 I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~Ds~~~~~hK~l~~P-~g~g~l~  289 (356)
                      |.++|+++      ++++|+|++|+.+...   .....++ ...+.+.+..++||+++.| ..+|+++
T Consensus       171 i~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  229 (364)
T 1lc5_A          171 IADRCKSL------NINLILDEAFIDFIPH---ETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLV  229 (364)
T ss_dssp             HHHHHHHH------TCEEEEECTTGGGSTT---CCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEE
T ss_pred             HHHHhhhc------CcEEEEECcChhhccC---ccchhhHhccCCCEEEEEECchhhcCCccceEEEE
Confidence            99999999      9999999999876531   1111221 2235688888999998533 4579988

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.80  E-value=1.6e-19  Score=173.72  Aligned_cols=156  Identities=15%  Similarity=0.060  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHH
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FAR  172 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~----~~~  172 (356)
                      .+++++.+++++|.+.       .++++||++|+..++.++.++             +++|+++.+.|.++..    .++
T Consensus        64 ~~~l~~~ia~~~g~~~-------~i~~~~g~~ai~~~~~~l~~~-------------gd~Vl~~~~~y~~~~~~~~~~~~  123 (404)
T 1e5e_A           64 VSNLEGKIAFLEKTEA-------CVATSSGMGAIAATVLTILKA-------------GDHLISDECLYGCTHALFEHALT  123 (404)
T ss_dssp             HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESCCCHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHhCCCc-------EEEeCChHHHHHHHHHHHhCC-------------CCEEEEeCCCchhHHHHHHHHHH
Confidence            3456677888988863       788889999999998876432             5789999999999888    677


Q ss_pred             hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHH-hhhccCCCCcEEEeccccccc
Q 018437          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIHVDAASGGFI  251 (356)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~-~~~~~~~~~~l~vD~a~~~~~  251 (356)
                      ..|++++.+|++      |+++|++++++++++|++++|+||+|.+.|+++|.++|++ +      |+++++|++|+.+.
T Consensus       124 ~~g~~~~~v~~~------d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~------~~~li~De~~~~~~  191 (404)
T 1e5e_A          124 KFGIQVDFINTA------IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQE------GVLVIADNTFCSPM  191 (404)
T ss_dssp             HTTCEEEEECTT------STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTST------TCEEEEECTTTCTT
T ss_pred             HcCCEEEEECCC------CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhc------CCEEEEECCCchhh
Confidence            889999988864      7789999999899999999999999999999999999999 9      99999999998765


Q ss_pred             ccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      ..     .+..   .++|.+..|+||++++|.+  +|+++.++
T Consensus       192 ~~-----~~~~---~~~di~~~S~sK~~~~~g~ri~G~~~~~~  226 (404)
T 1e5e_A          192 IT-----NPVD---FGVDVVVHSATKYINGHTDVVAGLICGKA  226 (404)
T ss_dssp             TC-----CGGG---GTCSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred             hC-----Cccc---cCCEEEEEcCccccCCCCCCeEEEEEECH
Confidence            31     1222   2689999999999888876  69998765

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.80  E-value=3.4e-19  Score=170.21  Aligned_cols=204  Identities=11%  Similarity=-0.028  Sum_probs=145.9

Q ss_pred             ChHHHHHHHHH-Hhccc-CCCcccCcchHHHHHHHHHHHHHHhCC--CCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMA-SINKN-YVDMDEYPVTTELQNRCVNMIAHLFNT--PVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        68 ~~~~v~~~i~~-~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      .++.+.+++.+ .+... ...|....+..++++++.+++.+..+.  +++   ...+++|+||++++..++..+...   
T Consensus        45 ~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~---~~~i~~t~g~~~a~~~~~~~~~~~---  118 (397)
T 3fsl_A           45 QLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQ---RVATIQTLGGSGALKVGADFLKRY---  118 (397)
T ss_dssp             CCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT---CEEEEEESHHHHHHHHHHHHHHHH---
T ss_pred             CcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccccc---ceEEEEcCCcHHHHHHHHHHHHhc---
Confidence            34789999888 77642 234445567778888877777654432  221   014799999999999986433211   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec-CCccccCHHHHHHHHh---hCceEEEEecCCCccccc-
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEF-  218 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~-  218 (356)
                              ..+++|+++.++|..+...++..|++++.+|++ ++++.+|+++|+++++   ++++++++++++||||.+ 
T Consensus       119 --------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~  190 (397)
T 3fsl_A          119 --------FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADL  190 (397)
T ss_dssp             --------CTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCC
T ss_pred             --------CCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCC
Confidence                    014689999999999999999999999999983 3358999999999998   567889999999999999 


Q ss_pred             --CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCc-ccc-cCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          219 --EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       219 --~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                        +++++|.++|+++      ++++|+|++|+.+....-.+... ..+ .......+..+.+|.++ ...++|+++..
T Consensus       191 ~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~  262 (397)
T 3fsl_A          191 TNDQWDAVIEILKAR------ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVM  262 (397)
T ss_dssp             CHHHHHHHHHHHHHT------TCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred             CHHHHHHHHHHHHhC------CEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEe
Confidence              4566999999999      99999999998765420000000 111 12334566677899875 34458888763

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.80  E-value=6.2e-19  Score=170.87  Aligned_cols=218  Identities=11%  Similarity=-0.017  Sum_probs=154.2

Q ss_pred             cCCCC--cccccccCCCChHHHHHHHHHHhcccC------------CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCC
Q 018437           53 DGNPR--LNLASFVTTWMEPECDKLVMASINKNY------------VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA  118 (356)
Q Consensus        53 ~~~~~--~~l~~~~~~~~~~~v~~~i~~~~~~~~------------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~  118 (356)
                      +++|.  ++|+.-......+.+.+++.+......            ..|....+..++++++.+++.+..|....- ...
T Consensus        34 ~~~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~-~~~  112 (435)
T 3piu_A           34 VHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTF-DPN  112 (435)
T ss_dssp             TTBTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCC-CGG
T ss_pred             ccCCCCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCC-CHH
Confidence            34443  244333333445667777765443211            123344567888988888888766522100 113


Q ss_pred             CeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHH-hhCCeeEEEEecCC-ccccCHHHHH
Q 018437          119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR-YFEVELKEVKLEEG-YYVMNPVKAV  196 (356)
Q Consensus       119 ~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~-~~G~~v~~v~~~~~-~~~~d~~~L~  196 (356)
                      .+++|+||++|+..++.+++++             ++.|+++.++|.++...+. ..|++++.++.+++ ++.+|+++|+
T Consensus       113 ~v~~~~gg~~a~~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~  179 (435)
T 3piu_A          113 HLVLTAGATSANETFIFCLADP-------------GEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALE  179 (435)
T ss_dssp             GEEEEEHHHHHHHHHHHHHCCT-------------TCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHH
T ss_pred             HEEEcCChHHHHHHHHHHhcCC-------------CCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHH
Confidence            5899999999999999887542             5789999999999998888 78999999999753 3779999999


Q ss_pred             HHHhh------CceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc---c
Q 018437          197 ELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF---R  264 (356)
Q Consensus       197 ~~i~~------~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~---~  264 (356)
                      +++++      ++++|++++|+||||.+.+   +++|.++|+++      ++++++|++|+++...   ......+   .
T Consensus       180 ~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~~---~~~~~~~~~~~  250 (435)
T 3piu_A          180 EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK------GIHLISDEIYSGTAFS---SPSFISVMEVL  250 (435)
T ss_dssp             HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCCS---SSCCCCHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEeccccccccC---CCCCcCHHHhc
Confidence            99986      7899999999999999854   58888999999      9999999999875441   1111111   1


Q ss_pred             -C---------CCceEEEEcCCcCCC-CCcCeeEEEEeCC
Q 018437          265 -L---------PLVKSINVSGHKYGL-VYAGVGWVVWRTK  293 (356)
Q Consensus       265 -~---------~~~Ds~~~~~hK~l~-~P~g~g~l~~~~~  293 (356)
                       .         .....+..++||+++ .+..+|+++..++
T Consensus       251 ~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~  290 (435)
T 3piu_A          251 KDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDD  290 (435)
T ss_dssp             HC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCH
T ss_pred             cccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCH
Confidence             1         122367788999885 4567899987543

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.80  E-value=1.7e-18  Score=166.99  Aligned_cols=159  Identities=16%  Similarity=0.036  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH----H
Q 018437           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----A  171 (356)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~----~  171 (356)
                      ..+++++++++++|.+.       +++|+||++|+..++.++..+             +++|+++.++|.++...    +
T Consensus        57 ~~~~l~~~la~~~g~~~-------~~~~~~gt~a~~~al~~l~~~-------------gd~vi~~~~~~~~~~~~~~~~~  116 (412)
T 2cb1_A           57 TAKALEERLKALEGALE-------AVVLASGQAATFAALLALLRP-------------GDEVVAAKGLFGQTIGLFGQVL  116 (412)
T ss_dssp             HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCCT-------------TCEEEEETTCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchhHHHHHHHHH
Confidence            34567777999999863       789999999999999876321             57899999999876655    3


Q ss_pred             HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccccc
Q 018437          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (356)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~  251 (356)
                      +..|++++.++++       +++|++++++++++|++++++|++|.+.|+++|.++|+++      |+++|+|++|+.+.
T Consensus       117 ~~~g~~~~~~~~~-------~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~------~~~li~D~~~~~~~  183 (412)
T 2cb1_A          117 SLMGVTVRYVDPE-------PEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEA------GVALVVDNTFGAAG  183 (412)
T ss_dssp             TTTTCEEEEECSS-------HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECGGGTTT
T ss_pred             HHcCCEEEEECCC-------HHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHc------CCEEEEECCCcccc
Confidence            4578888888753       8999999999999999999999999999999999999999      99999999998752


Q ss_pred             ccccCCCCcccccCCCceEEEEcCCcCCCCCcC-eeEEEEeCCC
Q 018437          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWRTKD  294 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l~~~~~~  294 (356)
                      .. ..   ...   .++|.++.|+||++++|.+ +|.+++.++.
T Consensus       184 ~~-~~---~~~---~~~di~~~S~~K~~~~~~~~~G~~~~~~~~  220 (412)
T 2cb1_A          184 AL-CR---PLA---WGAHVVVESLTKWASGHGSVLGGAVLSRET  220 (412)
T ss_dssp             TS-CC---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECCC
T ss_pred             cc-CC---ccc---cCCeEEEECCcccccCCCCcEEEEEEeccc
Confidence            21 11   111   3689999999999988876 7888776643

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.80  E-value=1.7e-18  Score=171.21  Aligned_cols=197  Identities=12%  Similarity=-0.033  Sum_probs=148.2

Q ss_pred             HHHHHHHHHhcc----cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHH-HHHHHHH
Q 018437           71 ECDKLVMASINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK-RKWQQKR  145 (356)
Q Consensus        71 ~v~~~i~~~~~~----~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~-~~~~~~~  145 (356)
                      .+.+.+.+.+..    ....|....+...+++++.+++.+..|.+.+.   ..+++|+|+++++.+++.++. .+     
T Consensus       110 ~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~~~al~~~~~~l~~~~-----  181 (500)
T 3tcm_A          110 DSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANA---DDIFLTDGASPGVHLMMQLLIRNE-----  181 (500)
T ss_dssp             HHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCG---GGEEEESSSHHHHHHHHHHHCCST-----
T ss_pred             HHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCc---ccEEEcCCHHHHHHHHHHHHcCCC-----
Confidence            344444455544    23446666788999999999999988866422   458999999999999998874 32     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhh------CceEEEEecCCCccccc
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDE------NTICVAAILGSTLTGEF  218 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~  218 (356)
                              +++|+++.++|.++...++..|++++.++++++ +|.+|+++|++++++      ++++|++++|+||||.+
T Consensus       182 --------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~  253 (500)
T 3tcm_A          182 --------KDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQV  253 (500)
T ss_dssp             --------TEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCC
T ss_pred             --------CCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCccc
Confidence                    579999999999999999999999999999864 479999999999987      68899999999999999


Q ss_pred             CC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc---------CCCceEE-EEcCCcCCCC--Cc
Q 018437          219 ED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR---------LPLVKSI-NVSGHKYGLV--YA  283 (356)
Q Consensus       219 ~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~---------~~~~Ds~-~~~~hK~l~~--P~  283 (356)
                      .+   +++|.++|+++      ++++++|++|+.+...  .......+.         ......+ ..|++|.+++  ..
T Consensus       254 ~s~~~l~~i~~la~~~------~~~li~Deay~~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~  325 (500)
T 3tcm_A          254 LAEENQYDIVKFCKNE------GLVLLADEVYQENIYV--DNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGK  325 (500)
T ss_dssp             CCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCC--TTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGG
T ss_pred             CCHHHHHHHHHHHHHc------CCEEEEecCccccccC--CCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCcc
Confidence            54   67778889999      9999999999876541  111111110         1123334 3479998743  45


Q ss_pred             CeeEEEEe
Q 018437          284 GVGWVVWR  291 (356)
Q Consensus       284 g~g~l~~~  291 (356)
                      .+|++++.
T Consensus       326 R~G~~~~~  333 (500)
T 3tcm_A          326 RGGYFEIT  333 (500)
T ss_dssp             CCEEEEEE
T ss_pred             ceEEEEEe
Confidence            67888874

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.80  E-value=5.3e-18  Score=164.90  Aligned_cols=220  Identities=14%  Similarity=0.046  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHhhh-cCCCCcccccccCCC-ChHHHHHHHHHHhcc-----cCCCcccCcchHHHHHHHHHHHHHHhCCCC
Q 018437           40 EAAYQVINDELML-DGNPRLNLASFVTTW-MEPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNTPV  112 (356)
Q Consensus        40 ~~i~~~~~~~~~~-~~~~~~~l~~~~~~~-~~~~v~~~i~~~~~~-----~~~~~~~~~~~~~le~~~~~~la~l~g~~~  112 (356)
                      .++.+........ ++...++|+.+.++. .++.+.+++.+.+..     ....|....+..++++++.+++.  .|++.
T Consensus        53 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~  130 (449)
T 3qgu_A           53 PEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGR  130 (449)
T ss_dssp             HHHHHHHHHHHHHCTTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTC
T ss_pred             HHHHHHHHHHHhhCCCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCC
Confidence            3444444443332 344445666655543 457888888877653     22234444567788888777766  55543


Q ss_pred             CCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe----------eEEEE
Q 018437          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE----------LKEVK  182 (356)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~----------v~~v~  182 (356)
                      +   ...+++|+|+++++..+ .++.++             +++|+++.++|.++...++..|++          ++.+|
T Consensus       131 ~---~~~i~~t~G~~~al~~~-~~l~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~  193 (449)
T 3qgu_A          131 A---ADEIFISDGSKCDIARI-QMMFGS-------------KPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMV  193 (449)
T ss_dssp             C---GGGEEEESCHHHHHHHH-HHHHCS-------------SSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEE
T ss_pred             C---HHHEEEccCHHHHHHHH-HHHhCC-------------CCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEe
Confidence            2   14589999999999887 554332             578999999999999999999998          99999


Q ss_pred             ecCC-ccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCC
Q 018437          183 LEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD  258 (356)
Q Consensus       183 ~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~  258 (356)
                      ++++ .+..|++++     +++++|++++|+||||.+-+   +++|.++|+++      ++++++|++|+++...   +.
T Consensus       194 ~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~------~~~li~Dea~~~~~~~---~~  259 (449)
T 3qgu_A          194 CNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN------GSILVYDAAYALYISN---PD  259 (449)
T ss_dssp             CCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCCC---TT
T ss_pred             cccccCCcCChhHc-----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC------CcEEEEEcchHhhhcC---CC
Confidence            9753 355554332     57889999999999999855   78888999999      9999999999986542   11


Q ss_pred             Cccccc-C---CCceEEEEcCCcCCC-CCcCeeEEEEeC
Q 018437          259 LEWDFR-L---PLVKSINVSGHKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       259 ~~~~~~-~---~~~Ds~~~~~hK~l~-~P~g~g~l~~~~  292 (356)
                      ....+. .   .+.+.+..+++|+++ ...++|+++.++
T Consensus       260 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~  298 (449)
T 3qgu_A          260 CPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPK  298 (449)
T ss_dssp             SCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCT
T ss_pred             CCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCH
Confidence            112221 1   346788889999985 557789998754

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.80  E-value=2.2e-19  Score=168.33  Aligned_cols=185  Identities=14%  Similarity=0.057  Sum_probs=131.4

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      .+++++.+.+++...... ...+...++..    ++++++++++|.+.       .++++||++++..++.++.++    
T Consensus        13 ~~~p~~~~~~a~~~~~~~-~~~y~~~~~~~----~l~~~la~~~g~~~-------~~~~~~gt~a~~~~~~~~~~~----   76 (347)
T 1jg8_A           13 VTKPTEEMRKAMAQAEVG-DDVYGEDPTIN----ELERLAAETFGKEA-------ALFVPSGTMGNQVSIMAHTQR----   76 (347)
T ss_dssp             GCCCCHHHHHHHHTCCCC-CGGGTCCHHHH----HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT----
T ss_pred             CCCCCHHHHHHHhcCCCC-CcccCCChHHH----HHHHHHHHHhCCce-------EEEecCcHHHHHHHHHHhcCC----
Confidence            345567788877654321 11233344444    44566888888863       688999999999888776432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHH---HHHhhCCeeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCcc
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEK---FARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLT  215 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~t  215 (356)
                               +++|+++.++|.+...   .+...|++++.+ .++ ++.+|+++|++++++      ++++|++++++|||
T Consensus        77 ---------gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt  145 (347)
T 1jg8_A           77 ---------GDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRS  145 (347)
T ss_dssp             ---------TCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEE-TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTT
T ss_pred             ---------CCEEEEcCcchhhhccccchhhccCeEEEEe-cCC-CCccCHHHHHHHhccccccccCceEEEEecccccc
Confidence                     5799999999977543   567789998888 544 478999999999975      68999999999999


Q ss_pred             -cccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC
Q 018437          216 -GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG  284 (356)
Q Consensus       216 -G~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g  284 (356)
                       |.+.|   +++|.++|+++      |+++|+|++|..+...+. +.....+ ..++|.+++++||++++|.|
T Consensus       146 ~G~~~~~~~l~~i~~~a~~~------~~~li~D~a~~~~~~~~~-~~~~~~~-~~~~d~~~~s~sK~l~~~~G  210 (347)
T 1jg8_A          146 GGRVVPLENIKEICTIAKEH------GINVHIDGARIFNASIAS-GVPVKEY-AGYADSVMFCLSKGLCAPVG  210 (347)
T ss_dssp             TSBCCCHHHHHHHHHHHHHH------TCEEEEEETTHHHHHHHH-CCCHHHH-HHTCSEEEEESSSTTCCSSC
T ss_pred             CCccCcHHHHHHHHHHHHHC------CCEEEeehhhhhcchhhc-CCChHHh-cccccEEEEecccccCCCce
Confidence             99865   57889999999      999999998743211111 1101111 13578889999999877754

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.80  E-value=5.4e-19  Score=169.09  Aligned_cols=191  Identities=14%  Similarity=-0.020  Sum_probs=142.1

Q ss_pred             ChHHHHHHHHHHhccc---CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (356)
                      +++.+.+++.+.+...   ...|...++..++++.    +++++|+++     ..+++|+|+++++..++.++.++    
T Consensus        48 ~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~----la~~~g~~~-----~~v~~~~g~~~al~~~~~~~~~~----  114 (397)
T 2zyj_A           48 PKEEAAEAAARILREKGEVALQYSPTEGYAPLRAF----VAEWIGVRP-----EEVLITTGSQQALDLVGKVFLDE----  114 (397)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHH----HHHHHTSCG-----GGEEEESHHHHHHHHHHHHHCCT----
T ss_pred             CHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHH----HHHHhCCCh-----hhEEEeccHHHHHHHHHHHhCCC----
Confidence            4577888887766532   1233333455555555    666667654     34899999999999998887432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEE-EEecCCCcccccCCH-
Q 018437          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICV-AAILGSTLTGEFEDV-  221 (356)
Q Consensus       145 ~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v-~~~~~~~~tG~~~~i-  221 (356)
                               +++|+++.++|..+...++..|++++.+|.+++ + +|+++|++++++ ++++| ++++++||||.+.|. 
T Consensus       115 ---------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~-~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~  183 (397)
T 2zyj_A          115 ---------GSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE-G-PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLP  183 (397)
T ss_dssp             ---------TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-E-ECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHH
T ss_pred             ---------CCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC-C-CCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHH
Confidence                     478999999999999999999999999999864 4 999999999987 78887 578999999999765 


Q ss_pred             --HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C--C---CceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          222 --KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L--P---LVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       222 --~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~--~---~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                        ++|.++|+++      |+++++|++|+.+...   ......+. .  .   ....+..++||+++...++|+++.+
T Consensus       184 ~l~~l~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~  252 (397)
T 2zyj_A          184 ARKRLLQMVMER------GLVVVEDDAYRELYFG---EARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAH  252 (397)
T ss_dssp             HHHHHHHHHHHH------TCCEEEECTTTTCBCS---SCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECC
T ss_pred             HHHHHHHHHHHc------CCEEEEeCCcccccCC---CCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecC
Confidence              4899999999      9999999999875531   11111211 1  1   2236677899998733578999875

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.79  E-value=1.1e-18  Score=167.96  Aligned_cols=247  Identities=11%  Similarity=-0.004  Sum_probs=151.9

Q ss_pred             CChHHHHHHHHHHhcccC--CCcc--cCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNY--VDMD--EYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~--~~~~--~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      +.+|.+.+++.+.+....  +.+.  .+.   ....+++.+++++++++|.+.      ..++++||++|+..++.++.+
T Consensus        43 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~v~~~~Gs~a~~~al~~~~~  116 (425)
T 3ecd_A           43 IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGH------ANVQPHSGAQANGAVMLALAK  116 (425)
T ss_dssp             CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCC------ceeecCchHHHHHHHHHHccC
Confidence            346888898887774221  1111  111   122456566688999999875      134688999999999887743


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcch-HHHHH--HhhCCe--eEEEEecCCccccCHHHHHHHHh-hCceEEEEecCCC
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVC-WEKFA--RYFEVE--LKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGST  213 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s-~~~~~--~~~G~~--v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~  213 (356)
                      +             +++|+++.++|.+ +...+  ...|..  ++.++++++++.+|+++|+++++ +++++|++++++|
T Consensus       117 ~-------------gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~  183 (425)
T 3ecd_A          117 P-------------GDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY  183 (425)
T ss_dssp             T-------------TCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC
T ss_pred             C-------------CCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC
Confidence            2             5789999999987 22222  244554  44555554458999999999997 5889999887777


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                        |...++++|.++|+++      |+++|+|++|..+...  .+.....  ...+|.++.++||++.+|. .|+++.+++
T Consensus       184 --~~~~~l~~i~~l~~~~------~~~li~De~~~~g~~~--~~~~~~~--~~~~di~~~s~sK~l~g~~-~g~~~~~~~  250 (425)
T 3ecd_A          184 --PRKLDFARFRAIADSV------GAKLMVDMAHIAGVIA--AGRHANP--VEHAHVVTSTTHKTLRGPR-GGFVLTNDE  250 (425)
T ss_dssp             --CSCCCHHHHHHHHHHH------TCEEEEECGGGHHHHH--TTSSCCG--GGTCSEEEEESSGGGCCCS-CEEEEESCH
T ss_pred             --CCcCCHHHHHHHHHHc------CCEEEEECcChHhhhh--cccccCc--hhcCcEEEecCCcccCCCC-cEEEEeCCH
Confidence              6789999999999999      9999999996544331  1111111  2247899999999987775 488877543


Q ss_pred             CCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ... ..+.. ..+.+       ..++......+++..++.....++++++.++..+++++|
T Consensus       251 ~~~-~~~~~-~~~~~-------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l  302 (425)
T 3ecd_A          251 EIA-KKINS-AVFPG-------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQAL  302 (425)
T ss_dssp             HHH-HHHHH-HHC------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHh-hhCcc-------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            221 11110 01111       113344444566666776666677777777777666654

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.79  E-value=1.3e-18  Score=168.11  Aligned_cols=181  Identities=11%  Similarity=-0.011  Sum_probs=136.7

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 018437           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (356)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~  170 (356)
                      .+..++++++.+++.+.+|.+... ....+++|+|+++++..++.+++++             +++|+++.++|..+...
T Consensus        83 ~g~~~lr~~la~~~~~~~g~~~~~-~~~~i~~~~G~~~ai~~~~~~~~~~-------------gd~Vl~~~p~y~~~~~~  148 (428)
T 1iay_A           83 HGLPEFRKAIAKFMEKTRGGRVRF-DPERVVMAGGATGANETIIFCLADP-------------GDAFLVPSPYYPAFNRD  148 (428)
T ss_dssp             TCCHHHHHHHHHHHHHHTTTCSCC-CTTSCEEEEHHHHHHHHHHHHHCCT-------------TCEEEEESSCCTTHHHH
T ss_pred             CCcHHHHHHHHHHHHHhcCCCCCC-ChhhEEEccChHHHHHHHHHHhCCC-------------CCeEEEccCCCcchHHH
Confidence            357889999888888888854100 1135789999999999999887542             47899999999998775


Q ss_pred             H-HhhCCeeEEEEecC-CccccCHHHHHHHHhh------CceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCC
Q 018437          171 A-RYFEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDT  239 (356)
Q Consensus       171 ~-~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~  239 (356)
                      + ...|++++.+|.++ +++.+|+++|++++++      ++++|++++|+||||.+.|   +++|.++|+++      ++
T Consensus       149 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~------~~  222 (428)
T 1iay_A          149 LRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH------NI  222 (428)
T ss_dssp             TTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT------TC
T ss_pred             HHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHC------Ce
Confidence            5 46799999999864 2478999999999874      6888999999999999988   99999999999      99


Q ss_pred             cEEEecccccccccccCCC-Cc-ccccCC------Cce--EEEEcCCcCCC-CCcCeeEEEEeCC
Q 018437          240 PIHVDAASGGFIAPFLYPD-LE-WDFRLP------LVK--SINVSGHKYGL-VYAGVGWVVWRTK  293 (356)
Q Consensus       240 ~l~vD~a~~~~~~~~~~~~-~~-~~~~~~------~~D--s~~~~~hK~l~-~P~g~g~l~~~~~  293 (356)
                      ++|+|++|+++...  ... .. ..+...      +.|  .+..++||+++ ....+|+++..++
T Consensus       223 ~li~Dea~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~  285 (428)
T 1iay_A          223 HLVCDEIYAATVFD--TPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND  285 (428)
T ss_dssp             EEEEECTTGGGCCS--SSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH
T ss_pred             EEEEeccccccccC--CCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCH
Confidence            99999999875431  110 01 111111      156  67889999875 3345799987543

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.79  E-value=7e-19  Score=169.00  Aligned_cols=245  Identities=11%  Similarity=0.014  Sum_probs=154.8

Q ss_pred             ChHHHHHHHHHHhcccC--CCc-----ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNY--VDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~--~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      .+|.+.+++.+.+....  +++     ........+++.+++++++++|++..      .+++++|++++..++.++..+
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------~v~~~sGs~a~~~a~~~~~~~  115 (420)
T 3gbx_A           42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA------NVQPHSGSQANFAVYTALLQP  115 (420)
T ss_dssp             CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE------ECCCSSHHHHHHHHHHHHCCT
T ss_pred             CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc------eeEecCcHHHHHHHHHHhcCC
Confidence            46888999887774322  111     11223356777788999999999751      233455689999988877442


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHH---HHHHhhCC--eeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWE---KFARYFEV--ELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTL  214 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~---~~~~~~G~--~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~  214 (356)
                                   +++|+++.++|.++.   ......|.  .++.+++++ ++.+|+++|++++++ ++++|+++.|+++
T Consensus       116 -------------gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~~~  181 (420)
T 3gbx_A          116 -------------GDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDE-SGKIDYDEMAKLAKEHKPKMIIGGFSAYS  181 (420)
T ss_dssp             -------------TCEEEEEEEC------------CHHHHSEEEEEEECT-TCSCCHHHHHHHHHHHCCSEEEECCTTCC
T ss_pred             -------------CCEEEecchhhcceeccchhhhhcccceeEEeccCCc-cCCcCHHHHHHHHHhcCCeEEEEecCccC
Confidence                         578999999998743   22233344  444556664 489999999999987 5899988888875


Q ss_pred             ccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC-
Q 018437          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK-  293 (356)
Q Consensus       215 tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~-  293 (356)
                        ...|+++|.++|++|      |+++|+|++|+.+...  .......  ...+|.++.++||++++|.| |+++.++. 
T Consensus       182 --~~~~l~~l~~l~~~~------~~~li~De~~~~~~~~--~~~~~~~--~~~~di~~~s~sK~~~g~~g-g~~~~~~~~  248 (420)
T 3gbx_A          182 --GVVDWAKMREIADSI------GAYLFVDMAHVAGLIA--AGVYPNP--VPHAHVVTTTTHKTLAGPRG-GLILAKGGD  248 (420)
T ss_dssp             --SCCCHHHHHHHHHHT------TCEEEEECTTTHHHHH--TTSSCCS--TTTSSEEEEESSGGGCSCSC-EEEEESSCC
T ss_pred             --CccCHHHHHHHHHHc------CCEEEEECCcchhcee--cccCCcc--cccCCEEEeecccCCCCCCc-eEEEEcCCc
Confidence              578999999999999      9999999998654431  1111111  23589999999999877876 88876541 


Q ss_pred             -CCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          294 -DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       294 -~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                       ... ..+. ...+.+       ..++.+....+++..++.....++++++.++..+++++|
T Consensus       249 ~~~~-~~~~-~~~~~~-------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l  301 (420)
T 3gbx_A          249 EELY-KKLN-SAVFPS-------AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAM  301 (420)
T ss_dssp             HHHH-HHHH-HHHC-----------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHhh-hhcCCC-------CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence             111 1110 000110       113444444566666776666667777777776666554

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.79  E-value=6.3e-19  Score=170.89  Aligned_cols=155  Identities=17%  Similarity=0.030  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHHh
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARY  173 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~----~~~~  173 (356)
                      +++++++++++|.+.       .+++++|++|+..++.++.++             +++|+++.+.|.++..    .+..
T Consensus        85 ~~le~~lA~l~g~~~-------~v~~~sG~~Ai~~al~al~~~-------------Gd~Vi~~~~~y~~~~~~~~~~~~~  144 (430)
T 3ri6_A           85 EDLEQRLKNLTGALG-------VLALGSGMAAISTAILTLARA-------------GDSVVTTDRLFGHTLSLFQKTLPS  144 (430)
T ss_dssp             HHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCCchhHHHHHHHHHHH
Confidence            355566899999864       677788899999998877442             5799999999988776    6667


Q ss_pred             hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccccccc
Q 018437          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP  253 (356)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~  253 (356)
                      .|++++.|+.+      |+++|++++++++++|++++|+||+|.+.|+++|.++|+++      |+++|+|++|+.+.. 
T Consensus       145 ~G~~~~~v~~~------d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~------g~~livD~a~~~~~~-  211 (430)
T 3ri6_A          145 FGIEVRFVDVM------DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAK------GIPLVVDTTMTPPYL-  211 (430)
T ss_dssp             TTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTT------TCCEEEECTTSCTTT-
T ss_pred             cCCEEEEeCCC------CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECCCccccc-
Confidence            89999988864      89999999999999999999999999999999999999999      999999999985433 


Q ss_pred             ccCCCCcccccCCCceEEEEcCCcCCCCC--cCeeEEEEeC
Q 018437          254 FLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWRT  292 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P--~g~g~l~~~~  292 (356)
                       ..   +.   ..++|.++.|++|++++|  .-.|+++.+.
T Consensus       212 -~~---~~---~~g~div~~S~sK~l~g~g~~~gG~vv~~~  245 (430)
T 3ri6_A          212 -LE---AK---RLGVDIEVLSSTKFISGGGTSVGGVLIDHG  245 (430)
T ss_dssp             -CC---GG---GGTCSEEEEECCCEEETTEEECCEEEEECS
T ss_pred             -CC---hH---HcCCEEEEECCcccccCCCCceEEEEEECC
Confidence             11   11   237899999999998766  2446665544

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.79  E-value=1.7e-18  Score=167.18  Aligned_cols=155  Identities=15%  Similarity=0.043  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH----Hh
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RY  173 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~----~~  173 (356)
                      +++++.+++++|.+.       .++++||++|+..++.++.++             +++||++.+.|.+....+    +.
T Consensus        85 ~~le~~lA~l~g~~~-------~i~~ssGt~Ai~~al~~l~~~-------------Gd~Vi~~~~~y~~~~~~~~~~l~~  144 (415)
T 2fq6_A           85 FSLQQAMCELEGGAG-------CVLFPCGAAAVANSILAFIEQ-------------GDHVLMTNTAYEPSQDFCSKILSK  144 (415)
T ss_dssp             HHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCCT-------------TCEEEEETTSCHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHHHHHHHHH
Confidence            455566899999863       577789999999998865432             579999999998876544    45


Q ss_pred             hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHH--hhhccCCCCcEEEeccccccc
Q 018437          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK--KNEETGWDTPIHVDAASGGFI  251 (356)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~--~~~~~~~~~~l~vD~a~~~~~  251 (356)
                      .|+++++++.+      |+++|+++++++|++|++.+++||+|.+.|+++|+++|++  +      |+++|+|++|+.++
T Consensus       145 ~G~~v~~v~~~------d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~------g~~livD~a~a~~~  212 (415)
T 2fq6_A          145 LGVTTSWFDPL------IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVP------DAIIMIDNTWAAGV  212 (415)
T ss_dssp             GTCEEEEECTT------CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCT------TCEEEEECTTTTTT
T ss_pred             cCcEEEEECCC------CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcC------CCEEEEECCCcccc
Confidence            68998888753      7889999999999999999999999999999999999999  9      99999999998543


Q ss_pred             ccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      .  .   .+..   .++|.++.|+||+++++.+  .|+++.++
T Consensus       213 ~--~---~p~~---~g~Div~~S~sK~lg~~g~~~~G~l~~~~  247 (415)
T 2fq6_A          213 L--F---KALD---FGIDVSIQAATKYLVGHSDAMIGTAVCNA  247 (415)
T ss_dssp             S--S---CGGG---GTCSEEEEETTTTTTCSSSCCCEEEEECT
T ss_pred             c--C---Cccc---cCCeEEEEeCccccCCCCCceEEEEEeCH
Confidence            2  1   1222   3789999999999866654  68887754

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.79  E-value=2.6e-18  Score=162.27  Aligned_cols=163  Identities=15%  Similarity=0.027  Sum_probs=127.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCC-CeEEecCCCcchHHHHHHhhCCe
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDK-PNIVTGANVQVCWEKFARYFEVE  177 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~-~~vi~s~~~h~s~~~~~~~~G~~  177 (356)
                      ++++.+++++|+++     ..+++|+|+++++..++.++.++             + ++|+++.++|..+...++..|++
T Consensus        62 ~lr~~la~~~~~~~-----~~v~~~~G~~~ai~~~~~~~~~~-------------g~d~Vl~~~p~~~~~~~~~~~~g~~  123 (356)
T 1fg7_A           62 AVIENYAQYAGVKP-----EQVLVSRGADEGIELLIRAFCEP-------------GKDAILYCPPTYGMYSVSAETIGVE  123 (356)
T ss_dssp             HHHHHHHHHHTSCG-----GGEEEESHHHHHHHHHHHHHCCT-------------TTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred             HHHHHHHHHhCCCh-----HHEEEcCCHHHHHHHHHHHHhCC-------------CCCEEEEeCCChHHHHHHHHHcCCE
Confidence            45556888888875     34899999999999999887532             4 78999999999999999999999


Q ss_pred             eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHH--hhhccCCCCcEEEeccccccccccc
Q 018437          178 LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK--KNEETGWDTPIHVDAASGGFIAPFL  255 (356)
Q Consensus       178 v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~--~~~~~~~~~~l~vD~a~~~~~~~~~  255 (356)
                      ++.+|+++ ++.+|+++|+++++ ++++|++++|+||||.+.|.++|.++++.  +      ++++++|++|+.+.. . 
T Consensus       124 ~~~v~~~~-~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~-~-  193 (356)
T 1fg7_A          124 CRTVPTLD-NWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG------KAIVVADEAYIEFCP-Q-  193 (356)
T ss_dssp             EEECCCCT-TSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT------TCEEEEECTTGGGSG-G-
T ss_pred             EEEeeCCC-CCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC------CCEEEEEccchhhcC-C-
Confidence            99999875 48899999999998 88999999999999999887666655554  7      999999999987541 0 


Q ss_pred             CCCCcccc-cCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          256 YPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       256 ~~~~~~~~-~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                       .. ...+ ...+.+.+..+++|+++ ....+|+++.+
T Consensus       194 -~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~  229 (356)
T 1fg7_A          194 -AS-LAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN  229 (356)
T ss_dssp             -GC-SGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC
T ss_pred             -Cc-HHHHHhhCCCEEEEecchHhhcCchhhhEEEEeC
Confidence             00 1121 22245777888999874 33458999874

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.79  E-value=2.1e-18  Score=162.80  Aligned_cols=185  Identities=11%  Similarity=0.036  Sum_probs=138.8

Q ss_pred             CChHHHHHHHHHHhccc---CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      ++++.+.+++.+.+...   ...+.. +...    ++++.+++++|+++     ..+++|+||++|+..++.++.++   
T Consensus        39 ~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~----~lr~~la~~~g~~~-----~~i~~t~g~~~al~~~~~~l~~~---  105 (360)
T 3hdo_A           39 PPSPEVVKAILEELGPDGAALRIYPS-ASSQ----KLREVAGELYGFDP-----SWIIMANGSDEVLNNLIRAFAAE---  105 (360)
T ss_dssp             CCCHHHHHHHHHHHTTTCGGGGSCCC-SSCH----HHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHHHHHCCT---
T ss_pred             CCCHHHHHHHHHHHhcccchhhcCCC-CchH----HHHHHHHHHhCcCc-----ceEEEcCCHHHHHHHHHHHHhCC---
Confidence            34578899988887653   222221 2333    45566888888765     35899999999999999877432   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHH
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKL  223 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~  223 (356)
                                +++|+++.++|.++...++..|++++.+|++++ +.+  +++++++  ++++|++++++||||.+.|+++
T Consensus       106 ----------gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~--~~l~~~~--~~~~v~i~~p~nptG~~~~~~~  170 (360)
T 3hdo_A          106 ----------GEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGD-FRI--AGFPERY--EGKVFFLTTPNAPLGPSFPLEY  170 (360)
T ss_dssp             ----------TCEEEEESSSCTHHHHHHHHHTCEEEEECBCTT-SSB--TTCCSSB--CSSEEEEESSCTTTCCCCCHHH
T ss_pred             ----------CCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCC-CCH--HHHHhhc--CCCEEEEeCCCCCCCCCcCHHH
Confidence                      579999999999999999999999999999764 666  5554443  3568999999999999999999


Q ss_pred             HHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc-cCCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       224 I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      |.++|+++      ++++++|++|+.+.-     .....+ .....+.+..+++|+++ ...++|+++.
T Consensus       171 l~~l~~~~------~~~li~De~~~~~~~-----~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~  228 (360)
T 3hdo_A          171 IDELARRC------AGMLVLDETYAEFAE-----SNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIA  228 (360)
T ss_dssp             HHHHHHHB------SSEEEEECTTGGGSS-----CCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEEC
T ss_pred             HHHHHHHC------CCEEEEECChHhhCC-----cchhHHhccCCCEEEEecchHhhcCCccceeeEee
Confidence            99999999      999999999986421     111111 12244567778999974 4467888876

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.79  E-value=1.4e-18  Score=166.92  Aligned_cols=219  Identities=12%  Similarity=0.020  Sum_probs=147.9

Q ss_pred             CCCCcccccccC------CCChHHHHHHHHHHhcc--cCCCcccCcchHHHHHHHHHHHHHHhCC--CCCCCCCCCeEE-
Q 018437           54 GNPRLNLASFVT------TWMEPECDKLVMASINK--NYVDMDEYPVTTELQNRCVNMIAHLFNT--PVADDKTAVGVG-  122 (356)
Q Consensus        54 ~~~~~~l~~~~~------~~~~~~v~~~i~~~~~~--~~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~-  122 (356)
                      +...++|+.+.+      .++++.+.+++.+.+..  ....|....+..++++.+.+++....|.  ++     ..+++ 
T Consensus        29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~-----~~v~~~  103 (412)
T 1ajs_A           29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQE-----KRVGGV  103 (412)
T ss_dssp             CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-----TCEEEE
T ss_pred             CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCC-----CcEEEE
Confidence            333445555543      23457888888877622  2233444556677777766666443333  22     24788 


Q ss_pred             -eCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe-eEEEEecC-CccccCHHHHHHHH
Q 018437          123 -TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-LKEVKLEE-GYYVMNPVKAVELV  199 (356)
Q Consensus       123 -t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~-v~~v~~~~-~~~~~d~~~L~~~i  199 (356)
                       |+||++|+..++..+... .     +|....+++|+++.++|..+...++..|++ ++.+|+++ +++.+|+++|++++
T Consensus       104 ~t~gg~~a~~~~~~~~~~~-~-----~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l  177 (412)
T 1ajs_A          104 QSLGGTGALRIGAEFLARW-Y-----NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDL  177 (412)
T ss_dssp             EEEHHHHHHHHHHHHHHHH-S-----SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHHHHh-C-----cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHH
Confidence             999999999987544321 0     010000168999999999999999999999 99999842 35899999999999


Q ss_pred             hh---CceEEEEecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEeccccccccccc-CCCCccc-cc-CCCceE
Q 018437          200 DE---NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEWD-FR-LPLVKS  270 (356)
Q Consensus       200 ~~---~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~~~-~~-~~~~Ds  270 (356)
                      ++   +++++++++|+||||.+.   ++++|.++|+++      |+++|+|++|.++...-. ....... +. ...-+.
T Consensus       178 ~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (412)
T 1ajs_A          178 ENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR------FLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELF  251 (412)
T ss_dssp             HHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEE
T ss_pred             HhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEcccccccCCcccccchHHHHHhccCCcEE
Confidence            76   677888999999999984   467899999999      999999999887543100 0000111 11 122236


Q ss_pred             EEEcCCcCCCCCcC--eeEEEE
Q 018437          271 INVSGHKYGLVYAG--VGWVVW  290 (356)
Q Consensus       271 ~~~~~hK~l~~P~g--~g~l~~  290 (356)
                      +..+++|.++ +.|  +|++++
T Consensus       252 ~~~s~sK~~~-~~G~riG~~~~  272 (412)
T 1ajs_A          252 CAQSFSKNFG-LYNERVGNLTV  272 (412)
T ss_dssp             EEEECTTTSC-CGGGCEEEEEE
T ss_pred             EEEecccccC-CCCcceEEEEE
Confidence            6788999764 444  899988

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.79  E-value=6.5e-18  Score=160.84  Aligned_cols=201  Identities=16%  Similarity=0.116  Sum_probs=145.9

Q ss_pred             HHHHHHHHhhhcCC-CCccccccc-CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 018437           42 AYQVINDELMLDGN-PRLNLASFV-TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV  119 (356)
Q Consensus        42 i~~~~~~~~~~~~~-~~~~l~~~~-~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~  119 (356)
                      ..+.+.+.+...+. +.+++.+.. ++++++.+.+++.     +..+|      ..+++++.+.+++++|.++.    ..
T Consensus        14 ~~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~~~~~------~~~~~~~~~~~a~~~g~~~~----~~   78 (374)
T 2aeu_A           14 ARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----TYIGS------SYFAEKVNEYGLKHLGGDEN----DK   78 (374)
T ss_dssp             HHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----STTHH------HHHHHHHHHHHHHHHTCCTT----EE
T ss_pred             HHHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----HhcCc------hHHHHHHHHHHHHHhCCCCc----ce
Confidence            34445555555565 666655543 3455677777775     11111      34667888888999998421    23


Q ss_pred             eEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC---cchHHHHHHhhCCeeEEEEecCCccccCHHHHH
Q 018437          120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV---QVCWEKFARYFEVELKEVKLEEGYYVMNPVKAV  196 (356)
Q Consensus       120 ~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~---h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~  196 (356)
                      .++|+||++|+..++.++  +             +++|+++.++   |+++...++..|++++.+        .|+++|+
T Consensus        79 ~~~~~ggt~a~~~~~~~~--~-------------gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v--------~d~~~l~  135 (374)
T 2aeu_A           79 CVGFNRTSSAILATILAL--K-------------PKKVIHYLPELPGHPSIERSCKIVNAKYFES--------DKVGEIL  135 (374)
T ss_dssp             EEEESSHHHHHHHHHHHH--C-------------CSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--------SCHHHHH
T ss_pred             EEEEcChHHHHHHHHHhC--C-------------CCEEEEecCCCCccHHHHHHHHHcCcEEEEe--------CCHHHHH
Confidence            789999999999999876  2             5789999985   444444777889988877        2789999


Q ss_pred             HHHhhCceE-EEEecCCCccc-ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc-cccCCCCcccccCCCceEEEE
Q 018437          197 ELVDENTIC-VAAILGSTLTG-EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDLEWDFRLPLVKSINV  273 (356)
Q Consensus       197 ~~i~~~~~~-v~~~~~~~~tG-~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~~~~~Ds~~~  273 (356)
                      ++ ++++++ |++++++||+| ...++++|.++|+++      |+++|+|++|+.+.. +.... ....   .++|.++.
T Consensus       136 ~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~-~~~~---~~~di~~~  204 (374)
T 2aeu_A          136 NK-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNK------EAIVFVDDASGARVRLLFNQP-PALK---LGADLVVT  204 (374)
T ss_dssp             TT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHHHHTTCC-CHHH---HTCSEEEE
T ss_pred             hc-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHc------CCEEEEECCcccccccccccC-Cccc---cCCcEEEe
Confidence            98 778999 99999999999 889999999999999      999999999987642 11110 0111   25689999


Q ss_pred             cCCcCCCCCcCeeEEEEeC
Q 018437          274 SGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       274 ~~hK~l~~P~g~g~l~~~~  292 (356)
                      ++||++.+ ++.|+++.++
T Consensus       205 S~sK~l~g-~~~G~~~~~~  222 (374)
T 2aeu_A          205 STDKLMEG-PRGGLLAGKK  222 (374)
T ss_dssp             ETTSSSSS-CSCEEEEEEH
T ss_pred             cCcccccC-cceEEEEECH
Confidence            99999765 4889988764

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.78  E-value=2.8e-18  Score=163.57  Aligned_cols=181  Identities=14%  Similarity=0.088  Sum_probs=140.3

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH-HHHHHHHHHh
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKE  147 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~  147 (356)
                      ++.+.+++.+.+......  ..+..    .++++.+++++|.+.       +++|+||++|+..++.++ ..+       
T Consensus        19 ~~~~~~a~~~~~~~~~~~--~~~~~----~~l~~~la~~~~~~~-------~~~~~~gt~al~~~~~~~~~~~-------   78 (393)
T 1mdo_A           19 GAEELAAVKTVLDSGWIT--TGPKN----QELEAAFCRLTGNQY-------AVAVSSATAGMHIALMALGIGE-------   78 (393)
T ss_dssp             CHHHHHHHHHHHHHTCCS--SSHHH----HHHHHHHHHHHCCSE-------EEEESCHHHHHHHHHHHTTCCT-------
T ss_pred             CHHHHHHHHHHHhcCCcC--CChHH----HHHHHHHHHHhCCCc-------EEEecChHHHHHHHHHHcCCCC-------
Confidence            356677887777643222  22333    355566888888753       789999999999999876 321       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i  227 (356)
                            +++|+++.++|.++..+++..|++++.+|++++++.+|+++|++++++++++|+++   +++|.+.|+++|.++
T Consensus        79 ------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l  149 (393)
T 1mdo_A           79 ------GDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYAL  149 (393)
T ss_dssp             ------TCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHH
T ss_pred             ------CCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHH
Confidence                  47899999999999999999999999999987558899999999998888888754   589999999999999


Q ss_pred             HHHhhhccCCCCcEEEecccccccccccCCCCcccccCCC-ceEEEEcCC--cCCCCCcCeeEEEEeCC
Q 018437          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPL-VKSINVSGH--KYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~-~Ds~~~~~h--K~l~~P~g~g~l~~~~~  293 (356)
                      |+++      ++++|+|++|+.+..+  .. ..  +   + .|.++.|+|  |++.++ ..|+++.+++
T Consensus       150 ~~~~------~~~li~D~a~~~g~~~--~~-~~--~---~~~d~~~~S~~k~K~l~~~-~~g~~~~~~~  203 (393)
T 1mdo_A          150 GERY------GIPVIEDAAHATGTSY--KG-RH--I---GARGTAIFSFHAIKNITCA-EGGIVVTDNP  203 (393)
T ss_dssp             HHHH------TCCBCEECTTCTTCEE--TT-EE--T---TSSSEEEEECCTTSSSCSS-SCEEEEESCH
T ss_pred             HHHc------CCeEEEECccccCCeE--CC-ee--c---CCCCeEEEeCCCCCccccc-cceEEEeCCH
Confidence            9999      9999999999854331  11 11  1   2 799999999  998654 5677776543

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.78  E-value=1.4e-18  Score=167.40  Aligned_cols=212  Identities=12%  Similarity=-0.041  Sum_probs=149.0

Q ss_pred             CCcccccccC------CCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHH
Q 018437           56 PRLNLASFVT------TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (356)
Q Consensus        56 ~~~~l~~~~~------~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (356)
                      ..++|+.+.+      .++++.+.+++.+........|....+..++++++.+++.+..+.+.    ...+++|+||++|
T Consensus        39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~----~~~i~~t~g~~~a  114 (418)
T 3rq1_A           39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEG----HIRSIATAGGTGG  114 (418)
T ss_dssp             GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSS----EEEEEEESHHHHH
T ss_pred             CeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccc----cccEEECCchHHH
Confidence            3445555543      23456778877654433333455556778888888888877766541    1248999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh----Cce-
Q 018437          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTI-  204 (356)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~-  204 (356)
                      +..++.++.++             +++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++    +++ 
T Consensus       115 l~~~~~~l~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~  181 (418)
T 3rq1_A          115 IHHLIHNYTEP-------------GDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNV  181 (418)
T ss_dssp             HHHHHHHHSCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEE
T ss_pred             HHHHHHHhcCC-------------CCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCE
Confidence            99999877542             579999999999999999999999999999654489999999999975    666 


Q ss_pred             EEEEecC-CCcccccCCHHHHH---HHHH------HhhhccCCCCcEEEecccccccccccC-CCCcccccCCCce---E
Q 018437          205 CVAAILG-STLTGEFEDVKLLH---DLLT------KKNEETGWDTPIHVDAASGGFIAPFLY-PDLEWDFRLPLVK---S  270 (356)
Q Consensus       205 ~v~~~~~-~~~tG~~~~i~~I~---~i~~------~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~~~~~~~D---s  270 (356)
                      ++++++| +||||.+.|.+++.   ++|+      ++      ++++++|++|.++...-.. ......+....-|   .
T Consensus       182 ~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i  255 (418)
T 3rq1_A          182 VVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN------NVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTC  255 (418)
T ss_dssp             EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC------EEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEE
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC------CeEEEEecccccccCChHHHHHHHHHHHhcCCCceEE
Confidence            7888889 99999997765555   5555      77      9999999999765431000 0000011101112   5


Q ss_pred             EEEcCCcCCC-CCcCeeEEEE
Q 018437          271 INVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       271 ~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      +..+++|.++ ....+|+++.
T Consensus       256 ~~~S~sK~~~~~G~r~G~~~~  276 (418)
T 3rq1_A          256 VCYSLSKGFTMYGQRVGAMIG  276 (418)
T ss_dssp             EEEESTTTTTCCSSCCEEEEE
T ss_pred             EEEeCCCCCcCcCCcceEEEE
Confidence            5568999875 4467898876

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.78  E-value=1.3e-17  Score=161.13  Aligned_cols=182  Identities=13%  Similarity=-0.037  Sum_probs=140.2

Q ss_pred             cccCcchHHHHHHHHHHHHHHhCCCCCCC----CCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCC
Q 018437           87 MDEYPVTTELQNRCVNMIAHLFNTPVADD----KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN  162 (356)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~----~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~  162 (356)
                      |....+..++++++.+++++.+|.+.++.    ....+++|+|+++++..++.++.++             +++|+++.+
T Consensus        74 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~-------------gd~Vlv~~p  140 (425)
T 2r2n_A           74 YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINP-------------GDNVLLDEP  140 (425)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCT-------------TCEEEEESS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCC-------------CCEEEEeCC
Confidence            44456778899999999999999874100    0125899999999999999887542             578999999


Q ss_pred             CcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh------------hCceEEEE-ecCCCcccccCCHH---HHHH
Q 018437          163 VQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD------------ENTICVAA-ILGSTLTGEFEDVK---LLHD  226 (356)
Q Consensus       163 ~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~------------~~~~~v~~-~~~~~~tG~~~~i~---~I~~  226 (356)
                      +|..+...++..|++++.+|++++  .+|+++|+++++            +++++|++ .+++||||.+.+.+   +|.+
T Consensus       141 ~y~~~~~~~~~~g~~~~~v~~~~~--~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~  218 (425)
T 2r2n_A          141 AYSGTLQSLHPLGCNIINVASDES--GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYE  218 (425)
T ss_dssp             CCHHHHHHHGGGTCEEEEECEETT--EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCEEEEeCcCCC--CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHH
Confidence            999999999999999999999764  499999999997            35777766 68999999997755   9999


Q ss_pred             HHHHhhhccCCCCcEEEecccccccccccCCCCc---ccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE---WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       227 i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +|+++      ++++++|++|+.+...   +...   ..+...+.+.+..+++|+++....+|+++..+
T Consensus       219 ~a~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~  278 (425)
T 2r2n_A          219 LARKY------DFLIIEDDPYYFLQFN---KFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPK  278 (425)
T ss_dssp             HHHHT------TCEEEEECTTGGGBSS---SSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEH
T ss_pred             HHHHc------CCEEEEECCcccccCC---CCCCCCccccCCCCCEEEEccchhhccCccceEEEecCH
Confidence            99999      9999999999875431   1111   12222234566778999986334589998864

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.78  E-value=4.1e-18  Score=165.38  Aligned_cols=212  Identities=15%  Similarity=0.082  Sum_probs=149.5

Q ss_pred             CCc-ccccccCCCCh---HHHHHHHHHHhccc------C------CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 018437           56 PRL-NLASFVTTWME---PECDKLVMASINKN------Y------VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV  119 (356)
Q Consensus        56 ~~~-~l~~~~~~~~~---~~v~~~i~~~~~~~------~------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~  119 (356)
                      ..+ +|+.+.|..++   +.+.+++.+.+..+      .      ..|....+..++++++.+++.+.+|++.+.   ..
T Consensus        32 ~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~---~~  108 (444)
T 3if2_A           32 QPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTS---EN  108 (444)
T ss_dssp             SCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GG
T ss_pred             hhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCH---HH
Confidence            335 66666665543   23455555544330      1      234445567899999999998888876422   45


Q ss_pred             eEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCC--------------eEEec-CCCcchHHHHH------HhhCCee
Q 018437          120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP--------------NIVTG-ANVQVCWEKFA------RYFEVEL  178 (356)
Q Consensus       120 ~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~--------------~vi~s-~~~h~s~~~~~------~~~G~~v  178 (356)
                      +++|+||++|+.+++.++..+             ++              +|+++ .++|..+...+      ...|..+
T Consensus       109 i~~t~G~t~al~~~~~~l~~~-------------gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~  175 (444)
T 3if2_A          109 IALTNGSQNAFFYLFNLFGGA-------------FVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHI  175 (444)
T ss_dssp             EEEESSHHHHHHHHHHHSSEE-------------EECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEE
T ss_pred             EEEecCcHHHHHHHHHHHhCC-------------CccccccccccccccceEEEeCCCCccchhhcccccchhhccCceE
Confidence            899999999999999887432             12              57776 88888776643      3346777


Q ss_pred             EEEEecCC----ccccCHHHHHHH---HhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccc
Q 018437          179 KEVKLEEG----YYVMNPVKAVEL---VDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASG  248 (356)
Q Consensus       179 ~~v~~~~~----~~~~d~~~L~~~---i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~  248 (356)
                      +.++++++    ++.+|+++|+++   +.+++++|++++|+||||.+.|   +++|.++|+++      ++++|+|++|+
T Consensus       176 ~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~  249 (444)
T 3if2_A          176 DEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY------DIPLIIDNAYG  249 (444)
T ss_dssp             EEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTC
T ss_pred             EecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHC------CCEEEEECCCC
Confidence            78887752    258999999998   6778999999999999999988   88899999999      99999999998


Q ss_pred             cccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          249 GFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      .++.......  ......+.+.+..++||++..+.++|+++..
T Consensus       250 ~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~  290 (444)
T 3if2_A          250 MPFPNIIYSD--AHLNWDNNTILCFSLSKIGLPGMRTGIIVAD  290 (444)
T ss_dssp             TTTTCCBCSC--CCCCCCTTEEEEEESTTTTCGGGCCEEEECC
T ss_pred             Cccccccccc--ccccCCCCEEEEechhhccCCCCceEEEEEC
Confidence            5332111010  1111245678888999986666788887653

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.78  E-value=6.4e-18  Score=164.66  Aligned_cols=246  Identities=9%  Similarity=-0.060  Sum_probs=159.5

Q ss_pred             CChHHHHHHHHHHhcccCC--Ccc-----cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYV--DMD-----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~--~~~-----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      +.+|.+.+++.+.+.....  ++.     ..+....+++..++++++++|++.      ..+++++|++|+..++.++++
T Consensus        56 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~------~~v~~~sGs~a~~~a~~~~~~  129 (447)
T 3h7f_A           56 FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEF------ANVQPHSGAQANAAVLHALMS  129 (447)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCc------eEEEeCCHHHHHHHHHHHhcC
Confidence            4468888988777642211  111     112233445444499999999974      133378889999999888754


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcch-HHH--HHHhh--CCeeEEEEecCCccccCHHHHHHHHh-hCceEEEEecCCC
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVC-WEK--FARYF--EVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGST  213 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s-~~~--~~~~~--G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~  213 (356)
                      +             +++|+++.++|.+ +..  .....  +..++.++++++++.+|+++|++++. .++++|+++.++|
T Consensus       130 ~-------------Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~  196 (447)
T 3h7f_A          130 P-------------GERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAY  196 (447)
T ss_dssp             T-------------TCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSC
T ss_pred             C-------------CCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCC
Confidence            3             5789999998866 221  11222  34555666665558999999999996 4788888888999


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      +++.  ++++|.++|+++      |+++|+|++|..+...  .... ... ..++|.++.++||++.+|.| |+++.++ 
T Consensus       197 ~~~~--~l~~i~~l~~~~------g~lli~Dea~~~g~~~--~g~~-~~~-~~~~di~~~s~sK~l~G~~g-G~i~~~~-  262 (447)
T 3h7f_A          197 PRVL--DFAAFRSIADEV------GAKLLVDMAHFAGLVA--AGLH-PSP-VPHADVVSTTVHKTLGGGRS-GLIVGKQ-  262 (447)
T ss_dssp             CSCC--CHHHHHHHHHHH------TCEEEEECTTTHHHHH--TTSS-CCS-TTTCSEEEEESSGGGCCCSC-EEEEECG-
T ss_pred             CCcc--CHHHHHHHHHHc------CCEEEEECCchhhhhc--CCCC-CCC-CCCCcEEEecCCcCCCCCCe-EEEEECH-
Confidence            8776  999999999999      9999999997543321  1111 111 24689999999999887877 8887654 


Q ss_pred             CCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +.. +.+.. ....+       ..++......+++.+++.....++++++.++..+++++|
T Consensus       263 ~~~-~~l~~-~~~~~-------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l  314 (447)
T 3h7f_A          263 QYA-KAINS-AVFPG-------QQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARII  314 (447)
T ss_dssp             GGH-HHHHH-HHTTT-------TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHhh-hcCCc-------ccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence            221 11111 00111       113333444566666677665656666766666666554

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.78  E-value=4.7e-18  Score=162.63  Aligned_cols=156  Identities=17%  Similarity=0.080  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH----HH
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----AR  172 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~----~~  172 (356)
                      ..++++.+++++|.+.       .+++++|++|+..++.++..+             +++|+++.++|.++...    ++
T Consensus        61 ~~~l~~~la~~~g~~~-------~i~~~sG~~ai~~~~~~~~~~-------------gd~vl~~~~~y~~~~~~~~~~~~  120 (389)
T 3acz_A           61 VEQFEEMVCSIEGAAG-------SAAFGSGMGAISSSTLAFLQK-------------GDHLIAGDTLYGCTVSLFTHWLP  120 (389)
T ss_dssp             HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHTTTCCT-------------TCEEEEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHHHHHHHH
Confidence            4456677999998863       677888999999988766332             57899999999986655    56


Q ss_pred             hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc
Q 018437          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~  252 (356)
                      ..|++++.+|.      .|+++|++++++++++|++++++||+|.+.|+++|.++|+++      |+++|+|++|+.+..
T Consensus       121 ~~g~~~~~v~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~------~~~livD~~~~~~~~  188 (389)
T 3acz_A          121 RFGIEVDLIDT------SDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHER------GARLVVDATFTSPCF  188 (389)
T ss_dssp             HTTCEEEEECT------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTCTTT
T ss_pred             HcCCEEEEECC------CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECCCccccc
Confidence            78999988876      378999999999999999999999999999999999999999      999999999986543


Q ss_pred             cccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                        .   .+.+   .++|.++.|+||++++|.+  .|+++.++
T Consensus       189 --~---~~~~---~~~di~~~S~sK~~~~~~~~~~G~v~~~~  222 (389)
T 3acz_A          189 --L---KPLE---LGADIALHSVSKYINGHGDVIGGVSSAKT  222 (389)
T ss_dssp             --C---CGGG---TTCSEEEEETTTTTTCSSCCCCEEEEESS
T ss_pred             --c---Cccc---cCCeEEEECChhhccCCCCceeEEEEECc
Confidence              1   1222   3689999999999988877  69998764

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.77  E-value=3.4e-18  Score=165.31  Aligned_cols=161  Identities=20%  Similarity=0.102  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEE---eCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC-CCcchHH----
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWE----  168 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~---t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~-~~h~s~~----  168 (356)
                      .+++.+.+++++|.+.       .++   +++|++||..++.++.++             +++|+++. +.|..+.    
T Consensus        75 ~~~Le~~lA~l~g~e~-------alv~p~~~sGt~Ai~~al~all~p-------------GD~Vl~~~~~~y~~~~~~~g  134 (427)
T 3i16_A           75 RDSLDAVYARVFNTES-------ALVRPHFVNGTHALGAALFGNLRP-------------GNTMLSVCGEPYDTLHDVIG  134 (427)
T ss_dssp             HHHHHHHHHHHHTCSE-------EEEETTCCSHHHHHHHHHHHHCCT-------------TCEEEESSSSCCGGGHHHHT
T ss_pred             HHHHHHHHHHHhCCcc-------eEEeCCCccHHHHHHHHHHHHhCC-------------CCEEEEeCCCccHHHHHHHh
Confidence            3345566999999975       355   889999999998877543             57899998 8887665    


Q ss_pred             -------HHHHhhCCeeEEEEecCCccccCHHHHHHHHh--hCceEEEEec----CCCcccccCCHHHHHHHHHH--hhh
Q 018437          169 -------KFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNE  233 (356)
Q Consensus       169 -------~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~~~~v~~~~----~~~~tG~~~~i~~I~~i~~~--~~~  233 (356)
                             ..++..|++++.+|++++ +.+|+++|+++++  +++++|++++    |+||+|.+.|+++|.++|++  +  
T Consensus       135 ~~~~~~~~~l~~~G~~~~~v~~~~~-g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~--  211 (427)
T 3i16_A          135 ITENSNMGSLKEFGINYKQVDLKED-GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRK--  211 (427)
T ss_dssp             CSCCCSSCCTGGGTCEEEECCCCTT-SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCT--
T ss_pred             ccccchHHHHHHcCCEEEEecCccC-CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCC--
Confidence                   334567999999999775 8999999999998  7899999999    99999999999999999999  8  


Q ss_pred             ccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC--cCeeEEEEe
Q 018437          234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWR  291 (356)
Q Consensus       234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P--~g~g~l~~~  291 (356)
                          +++++||++|+.++..    ..+..   .++|.++.++||+++++  ...|+++.+
T Consensus       212 ----g~~livD~a~~~~~~~----~~p~~---~gaDiv~~S~sK~lgg~g~~~gG~i~~~  260 (427)
T 3i16_A          212 ----DIICFVDNCYGEFMDT----KEPTD---VGADLIAGSLIKNIGGGIAPTGGYLAGT  260 (427)
T ss_dssp             ----TSEEEEECTTTTTSSS----SCGGG---GTCSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred             ----CCEEEEECCCcccccc----CCccc---cCCeEEEecCcccCCCCCCceEEEEEEC
Confidence                9999999999875531    11122   37899999999998662  234888765

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.77  E-value=3.4e-18  Score=164.56  Aligned_cols=161  Identities=14%  Similarity=0.072  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEE---eCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC-CCcchHHH---
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWEK---  169 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~---t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~-~~h~s~~~---  169 (356)
                      .+++.+.+++++|.+.       .++   +++|++|+..++.++.++             +++|+++. +.|..+..   
T Consensus        61 ~~~Le~~lA~l~g~e~-------alv~p~~~sGt~Ai~~al~all~~-------------GD~Vl~~~~~~y~~~~~~~~  120 (409)
T 3jzl_A           61 RDTLERVYATVFKTEA-------ALVRPQIISGTHAISTVLFGILRP-------------DDELLYITGQPYDTLEEIVG  120 (409)
T ss_dssp             HHHHHHHHHHHHTCSE-------EEEETTSCSHHHHHHHHHHHHCCT-------------TCEEEECSSSCCTTHHHHHT
T ss_pred             HHHHHHHHHHHhCCCc-------EEEECCCccHHHHHHHHHHHhcCC-------------CCEEEEeCCCCcHhHHHHHh
Confidence            3445566999999874       455   889999999998877543             57899987 88888774   


Q ss_pred             -------HHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEec----CCCcccccCCHHHHHHHHHH--hhhccC
Q 018437          170 -------FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEETG  236 (356)
Q Consensus       170 -------~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~----~~~~tG~~~~i~~I~~i~~~--~~~~~~  236 (356)
                             .++..|++++.+|++++ +.+|+++|+++++++|++|++++    ++|++|.+.|+++|.++|++  +     
T Consensus       121 ~~g~~~~~l~~~G~~~~~v~~~~~-g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~-----  194 (409)
T 3jzl_A          121 IRKQGQGSLKDFHIGYSSVPLLEN-GDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINP-----  194 (409)
T ss_dssp             SSSSSSSCTGGGTCEEEECCCCTT-SCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT-----
T ss_pred             cccchhhHHHHcCCEEEEeCCCCC-CCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCC-----
Confidence                   34567999999999874 89999999999999999999999    99999999999999999999  8     


Q ss_pred             CCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc--CeeEEEEe
Q 018437          237 WDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWR  291 (356)
Q Consensus       237 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l~~~  291 (356)
                       ++++|+|++|+.++..   . .+..   .++|.++.|+||+++++.  ..|+++.+
T Consensus       195 -~~~livD~a~~~~~~~---~-~p~~---~g~Div~~S~sK~lgg~~~~~GG~v~~~  243 (409)
T 3jzl_A          195 -EVIVFVDNCYGEFVEY---Q-EPPE---VGADIIAGSLIKNPGGGLAKTGGYIAGK  243 (409)
T ss_dssp             -TCEEEEECTTCTTTSS---C-CSGG---GTCSEEEEETTSGGGTTTCSSCEEEEEC
T ss_pred             -CCEEEEeCCccccccc---C-Cccc---cCCeEEEECccccCCccCCceEEEEEeC
Confidence             9999999999875431   1 1122   378999999999986642  23777764

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.77  E-value=9.7e-18  Score=163.15  Aligned_cols=156  Identities=11%  Similarity=-0.048  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH----H
Q 018437           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----A  171 (356)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~----~  171 (356)
                      ..+++++++++++|.+.       .+++++|++|+..++.++.++             +++|+++.+.|.++...    +
T Consensus       115 ~~~~l~~~lA~l~g~~~-------~v~~~sG~~Ai~~al~~l~~~-------------Gd~Vi~~~~~y~~~~~~~~~~~  174 (445)
T 1qgn_A          115 TTVVLEEKISALEGAES-------TLLMASGMCASTVMLLALVPA-------------GGHIVTTTDCYRKTRIFIETIL  174 (445)
T ss_dssp             HHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHSCS-------------SCEEEEETTSCHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEcCCCchhHHHHHHHHH
Confidence            44567777999999863       456666679999999876432             57899999999876653    5


Q ss_pred             HhhCCeeEEEEecCCccccCHHHHHHHHhhCc-eEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccc
Q 018437          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENT-ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (356)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~-~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~  250 (356)
                      +..|++++.+|.+      |+++|++++++++ ++|++++++||+|.+.|+++|.++|+++      |+++|+|++|+.+
T Consensus       175 ~~~G~~v~~v~~~------d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~------g~~livD~a~~~~  242 (445)
T 1qgn_A          175 PKMGITATVIDPA------DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEK------GALVCIDGTFATP  242 (445)
T ss_dssp             GGGTCEEEEECSS------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTCT
T ss_pred             HHcCCEEEEeCCC------CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCccc
Confidence            5679999988764      8999999999999 9999999999999999999999999999      9999999999864


Q ss_pred             cccccCCCCcccccCCCceEEEEcCCcCCCCCcC---eeEEEEeC
Q 018437          251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG---VGWVVWRT  292 (356)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g---~g~l~~~~  292 (356)
                      ..  ..   +.   ..++|.++.|+||+++ |.|   .|+++.++
T Consensus       243 ~~--~~---~~---~~g~Div~~S~sK~~g-g~gd~~~G~l~~~~  278 (445)
T 1qgn_A          243 LN--QK---AL---ALGADLVLHSATKFLG-GHNDVLAGCISGPL  278 (445)
T ss_dssp             TT--CC---TT---TTTCSEEEECTTTTTT-CSSSCCCEEEEECH
T ss_pred             cc--CC---cc---ccCCEEEEECCccccc-ccccceEEEEEECH
Confidence            33  11   11   2378999999999985 555   89888754

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.77  E-value=9.9e-18  Score=160.41  Aligned_cols=243  Identities=12%  Similarity=-0.039  Sum_probs=159.1

Q ss_pred             hHHHHHHHHHHhcccCCC---cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           69 EPECDKLVMASINKNYVD---MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~---~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +|.+.+++.+.+......   +....+......++++.+++++|.+.      .+++|+| +.++..++.++...     
T Consensus        62 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~------~i~~~sG-~~a~~~~~~~l~~~-----  129 (401)
T 2bwn_A           62 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA------ALVFSSA-YNANDATLSTLRVL-----  129 (401)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE------EEEESCH-HHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc------EEEECCc-HHHHHHHHHHHhcC-----
Confidence            467888887776542111   11111222344567777899998742      3556555 55777776654321     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh----hCceEEEEecCCCcccccCCH
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFEDV  221 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~~~~i  221 (356)
                            ..+++|+++.++|.++...++..|++++.+|.+      |+++|+++++    +++++|++++++||||.+.|+
T Consensus       130 ------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l  197 (401)
T 2bwn_A          130 ------FPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPI  197 (401)
T ss_dssp             ------STTCEEEEETTCCHHHHHHHHHSCCCEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCH
T ss_pred             ------CCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC------CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCH
Confidence                  014689999999999999999999999998864      7888998887    578999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-cccC-CCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccc
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRL-PLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~-~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~  299 (356)
                      ++|.++|+++      ++++|+|++|+.+.... ...... .... ...|.+..+++|.++.| | |+++.+ ++.. +.
T Consensus       198 ~~i~~l~~~~------~~~li~Dea~~~g~~~~-~g~~~~~~~~~~~~~~i~~~s~sK~~~~~-G-G~~~~~-~~~~-~~  266 (401)
T 2bwn_A          198 KEICDIAEEF------GALTYIDEVHAVGMYGP-RGAGVAERDGLMHRIDIFNGTLAKAYGVF-G-GYIAAS-ARMV-DA  266 (401)
T ss_dssp             HHHHHHHHHH------TCEEEEECTTTTTTSST-TSCCHHHHHTCGGGCSEEEEESSSTTCSC-C-EEEEEC-HHHH-HH
T ss_pred             HHHHHHHHHc------CCEEEEeccccccccCC-CCceeeeccCccccCcEEEeechhhccCC-C-CEEecC-HHHH-HH
Confidence            9999999999      99999999998543210 000000 1111 24577888999998654 4 777653 2221 11


Q ss_pred             ccc-ccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          300 LVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       300 ~~~-~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +.. ...+...       .++.+ ...+++.++++.+...|++++.++..+++++|
T Consensus       267 l~~~~~~~~~~-------~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  314 (401)
T 2bwn_A          267 VRSYAPGFIFS-------TSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVL  314 (401)
T ss_dssp             HHHHCHHHHTS-------BCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcCceec-------CCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            110 0011100       12333 44666778888887777777777777766655

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.77  E-value=5.1e-18  Score=163.84  Aligned_cols=157  Identities=11%  Similarity=-0.023  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHh--
Q 018437           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY--  173 (356)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~--  173 (356)
                      ..+++++++++++|.+.       .++++||++|+..++.++.++             +++|+++.+.|..+...++.  
T Consensus        82 ~~~~l~~~la~~~g~~~-------~~~~~sG~~Ai~~al~~l~~~-------------Gd~Vi~~~~~y~~~~~~~~~~~  141 (414)
T 3ndn_A           82 TVSVFEERLRLIEGAPA-------AFATASGMAAVFTSLGALLGA-------------GDRLVAARSLFGSCFVVCSEIL  141 (414)
T ss_dssp             HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCCT-------------TCEEEEESCCCHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCccchHHHHHHHHH
Confidence            44566777999999753       789999999999888876432             57999999999987766644  


Q ss_pred             --hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccccc
Q 018437          174 --FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (356)
Q Consensus       174 --~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~  251 (356)
                        .|++++.+|.+      |+++|++++++++++|+++.++||+|.+.|+++|.++|+++      |+++++|++|+.+.
T Consensus       142 ~~~g~~~~~v~~~------d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~------g~~livDe~~~~~~  209 (414)
T 3ndn_A          142 PRWGVQTVFVDGD------DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAA------GAKVVLDNVFATPL  209 (414)
T ss_dssp             HHTTCEEEEECTT------CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTHHH
T ss_pred             HHcCcEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHc------CCEEEEECCCcccc
Confidence              89999888864      78999999999999999999999999999999999999999      99999999998543


Q ss_pred             ccccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                      .  ..+   .   ..++|.++.|++|+++++..  .|+++.++
T Consensus       210 ~--~~~---~---~~g~div~~S~sK~l~~~G~~~~G~vv~~~  244 (414)
T 3ndn_A          210 L--QQG---F---PLGVDVVVYSGTKHIDGQGRVLGGAILGDR  244 (414)
T ss_dssp             H--CCC---G---GGTCSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred             c--CCc---h---hcCCCeEeccCCccccCCCCceEEEEEECH
Confidence            3  111   1   23689999999999854332  78887754

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.77  E-value=2.3e-18  Score=175.31  Aligned_cols=217  Identities=14%  Similarity=0.075  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~  177 (356)
                      .++.+.+|+++|.+.      ..++++|++.||..++.++.++             +++|+++.+.|.|+..++.+.|++
T Consensus       198 ~eaE~~lA~~fGa~~------a~~v~nGts~An~~ai~al~~p-------------GD~VLv~r~~H~S~~~~l~lsGa~  258 (715)
T 3n75_A          198 KEAEQYIARVFNADR------SYMVTNGTSTANKIVGMYSAPA-------------GSTILIDRNCHKSLTHLMMMSDVT  258 (715)
T ss_dssp             HHHHHHHHHHHTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHSCCE
T ss_pred             HHHHHHHHHHhCCCC------ceEECcHHHHHHHHHHHHhCCC-------------CCEEEECCCccHHHHHHHHHcCCE
Confidence            356667999999974      2456667689998888887553             689999999999999999999999


Q ss_pred             eEEEEecCCccc----c-----CHHHHHHHHhhC--ce---EEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEE
Q 018437          178 LKEVKLEEGYYV----M-----NPVKAVELVDEN--TI---CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV  243 (356)
Q Consensus       178 v~~v~~~~~~~~----~-----d~~~L~~~i~~~--~~---~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~v  243 (356)
                      +++++.+.+++.    +     |+++|++++++.  ++   +|++++| |++|.+.|+++|.++|+++      +  +++
T Consensus       259 pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~------~--liv  329 (715)
T 3n75_A          259 PIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK------S--IHF  329 (715)
T ss_dssp             EEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCS------E--EEE
T ss_pred             EEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcC------c--EEE
Confidence            999997643343    3     899999999853  34   7889999 8999999999999999765      3  899


Q ss_pred             ecccccccccccCCCCc--ccccC-CCceEE---EEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCcccc
Q 018437          244 DAASGGFIAPFLYPDLE--WDFRL-PLVKSI---NVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN  317 (356)
Q Consensus       244 D~a~~~~~~~~~~~~~~--~~~~~-~~~Ds~---~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (356)
                      |+||+.++.  +.+..+  ..+.. ..+|.+   +.|+||++.++.++|++++++. .....+.....+..        .
T Consensus       330 DEAH~~~~~--f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~-i~~~~~~~~~~~~~--------S  398 (715)
T 3n75_A          330 DSAWVPYTN--FSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMMHT--------T  398 (715)
T ss_dssp             ECTTCTTGG--GSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC-CCHHHHHHHHHHTS--------C
T ss_pred             ccccccccc--cCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch-hhHHHHHHHHHhhc--------C
Confidence            999987642  111111  11111 126765   8899999999989999999865 21111111111221        1


Q ss_pred             CCCChhHHHHHHHHHHHhCH-HHHHHHHHHHHhccCcc
Q 018437          318 FSKGSSQIIAQYYQFIRLGF-EEITFTFISSLKVCPFL  354 (356)
Q Consensus       318 ~tr~~~~~~~~~~~l~~lg~-~G~~~~~~~~~~~a~~l  354 (356)
                      .|.+...++++-++++.+-. +| +++.++.++++++|
T Consensus       399 TSpsy~~~AsldaA~~~~~~~~g-~~~~~~l~~~a~~~  435 (715)
T 3n75_A          399 TSPHYGIVASTETAAAMMKGNAG-KRLINGSIERAIKF  435 (715)
T ss_dssp             SSCCHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHH
Confidence            45666667788888877764 44 44666666666654

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.77  E-value=8.2e-18  Score=164.29  Aligned_cols=195  Identities=11%  Similarity=0.033  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcC
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (356)
                      +.+.+++.+.+......|...++..+    +++++++++|.+.       +++|+|||+|+..++.++++.+..    . 
T Consensus        55 ~~v~~a~~~~~~~~~~~y~~~~~~~~----l~~~la~~~~~~~-------v~~t~ggt~A~~~al~~~~~~~~~----~-  118 (467)
T 1ax4_A           55 NAMSDHQWAAMITGDEAYAGSRNYYD----LKDKAKELFNYDY-------IIPAHQGRGAENILFPVLLKYKQK----E-  118 (467)
T ss_dssp             CCEEHHHHHHHHTCCCCSSSCHHHHH----HHHHHHHHHCCCE-------EEEESSHHHHHHHHHHHHHHHHHH----T-
T ss_pred             HHHHHHHHHHHhhcccccccCccHHH----HHHHHHHHcCCCc-------EEEcCCcHHHHHHHHHHHHHhhcc----C-
Confidence            44555555554332223433344444    4556888888753       899999999999999998762210    1 


Q ss_pred             CCCCCCe---EEecCCCc-chHHHHHHhhCCeeEEEEecC---------CccccCHHHHHHHHhh----CceEEEEecCC
Q 018437          150 KPYDKPN---IVTGANVQ-VCWEKFARYFEVELKEVKLEE---------GYYVMNPVKAVELVDE----NTICVAAILGS  212 (356)
Q Consensus       150 ~~~~~~~---vi~s~~~h-~s~~~~~~~~G~~v~~v~~~~---------~~~~~d~~~L~~~i~~----~~~~v~~~~~~  212 (356)
                          +++   |+++ ..| ..+..++...|..++.++.+.         .++.+|+++|++++++    ++++|+++.++
T Consensus       119 ----Gd~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~  193 (467)
T 1ax4_A          119 ----GKAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTC  193 (467)
T ss_dssp             ----TCCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSB
T ss_pred             ----CCccceEEEe-ccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccc
Confidence                345   7887 555 556777888899888776531         1367999999999984    68999999999


Q ss_pred             Ccc-ccc---CCHHHHHHHHHHhhhccCCCCcEEEeccccc-ccc-------cccCCCCccccc---CCCceEEEEcCCc
Q 018437          213 TLT-GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGG-FIA-------PFLYPDLEWDFR---LPLVKSINVSGHK  277 (356)
Q Consensus       213 ~~t-G~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~-~~~-------~~~~~~~~~~~~---~~~~Ds~~~~~hK  277 (356)
                      ||+ |.+   +++++|.++|++|      |+++|+|+++.. +..       .+ .+....++.   ...+|.++.++||
T Consensus       194 np~gG~~~~~~~l~~i~~la~~~------gi~li~De~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~s~sK  266 (467)
T 1ax4_A          194 NSAGGQPVSMSNLKEVYEIAKQH------GIFVVMDSARFCENAYFIKARDPKY-KNATIKEVIFDMYKYADALTMSAKK  266 (467)
T ss_dssp             TTTTSBCCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHHHHHHHHCGGG-TTCCHHHHHHHHGGGCSEEEEETTS
T ss_pred             cCCCccCCChhHHHHHHHHHHHc------CCEEEEEchhhhhcchhcccccccc-CCCchhhhhhhhccccceEEEeccc
Confidence            999 776   5678999999999      999999998653 111       11 110001110   0247889999999


Q ss_pred             CCCCCcCeeEEEEeCC
Q 018437          278 YGLVYAGVGWVVWRTK  293 (356)
Q Consensus       278 ~l~~P~g~g~l~~~~~  293 (356)
                      +++.|.| |+++.+++
T Consensus       267 ~~g~~~G-g~~~~~d~  281 (467)
T 1ax4_A          267 DPLLNIG-GLVAIRDN  281 (467)
T ss_dssp             TTCCSSC-EEEEESSC
T ss_pred             cCCCCcc-eEEEeCCH
Confidence            9877655 66665534

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.77  E-value=2e-18  Score=161.06  Aligned_cols=154  Identities=21%  Similarity=0.128  Sum_probs=125.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH----Hhh
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RYF  174 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~----~~~  174 (356)
                      ++++.+++++|.+.       .+++++|++|+..++.++..+             +++|+++.++|.++...+    +..
T Consensus         2 ~l~~~la~~~g~~~-------~i~~~sG~~a~~~~~~~~~~~-------------g~~v~~~~~~~~~~~~~~~~~~~~~   61 (331)
T 1pff_A            2 ALEGKIAKLEHAEA-------CAATASGMGAIAASVWTFLKA-------------GDHLISDDCLYGCTHALFEHQLRKF   61 (331)
T ss_dssp             HHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESCCCHHHHHHHHTHHHHT
T ss_pred             hHHHHHHHHhCCCe-------EEEeCChHHHHHHHHHHhcCC-------------CCEEEEcCCCcchHHHHHHHHHHhc
Confidence            45667899999863       566667799999998876432             478999999999877665    457


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHH-hhhccCCCCcEEEeccccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIHVDAASGGFIAP  253 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~-~~~~~~~~~~l~vD~a~~~~~~~  253 (356)
                      |++++.+|.      .|+++|++++++++++|++++++||+|.+.|+++|.++|++ +      ++++|+|++|+.+..+
T Consensus        62 g~~~~~~~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~------~~~li~D~a~~~~~~~  129 (331)
T 1pff_A           62 GVEVDFIDM------AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQK------DILVIVDNTFASPILT  129 (331)
T ss_dssp             TCEEEEECT------TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSS------SCEEEEECTTTHHHHC
T ss_pred             CCEEEEeCC------CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhc------CCEEEEECCCcccccC
Confidence            898888875      37789999999889999999999999999999999999999 9      9999999999876541


Q ss_pred             ccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeC
Q 018437          254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~  292 (356)
                        .   +.+   .++|.++.|+||++++|.+  +|+++.++
T Consensus       130 --~---~~~---~~~d~~~~s~~K~~~~~~~r~~G~~~~~~  162 (331)
T 1pff_A          130 --N---PLD---LGVDIVVHSATKYINGHTDVVAGLVCSRA  162 (331)
T ss_dssp             --C---GGG---GTCSEEEEETTTTTSSSSSCCCEEEEECH
T ss_pred             --C---hhh---cCCcEEEEECccccCCCCCceEEEEEeCc
Confidence              1   122   3689999999999988877  78988764

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.76  E-value=1.4e-17  Score=161.16  Aligned_cols=224  Identities=11%  Similarity=0.007  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHhhhc-CCCCcccccccCC-CChHHHHHHHHHHhcc-----cCCCcccCcchHHHHHHHHHHHHHHhCCC
Q 018437           39 KEAAYQVINDELMLD-GNPRLNLASFVTT-WMEPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNTP  111 (356)
Q Consensus        39 ~~~i~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~v~~~i~~~~~~-----~~~~~~~~~~~~~le~~~~~~la~l~g~~  111 (356)
                      .+++.+........+ +...++|+.+.+. +.++.+.+++.+.+..     ....|....+..++++++.+++.+.++++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~  118 (432)
T 3ei9_A           39 FPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG  118 (432)
T ss_dssp             HHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC
Confidence            444444444333332 3344566665554 3457888888777652     22234444567888888888887645555


Q ss_pred             CCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCC------------eeE
Q 018437          112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV------------ELK  179 (356)
Q Consensus       112 ~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~------------~v~  179 (356)
                      +     ..+++|+|+++++.. +.++.++             +++|+++.++|.++...++..|.            +++
T Consensus       119 ~-----~~i~~t~G~~~al~~-l~~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~  179 (432)
T 3ei9_A          119 D-----DDVFVSDGAKCDISR-LQVMFGS-------------NVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIE  179 (432)
T ss_dssp             G-----GGEEEESCHHHHHHH-HHHHHCT-------------TCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCE
T ss_pred             c-----ceEEECCChHHHHHH-HHHHcCC-------------CCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceE
Confidence            4     458999999999876 3444321             57899999999999999988884            688


Q ss_pred             EEEecCC-ccccCHHHHHHHHhhCceEEEEecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEeccccccccccc
Q 018437          180 EVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (356)
Q Consensus       180 ~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (356)
                      .+|++++ ++..|++.     .+++++|++++|+||||.+-   ++++|.++|+++      ++++++|++|+.+..+- 
T Consensus       180 ~~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~------~~~li~Dea~~~~~~~~-  247 (432)
T 3ei9_A          180 YMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN------GSIIVYDSAYAMYMSDD-  247 (432)
T ss_dssp             EEECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCCSS-
T ss_pred             EeccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc------CcEEEEccchHhhccCC-
Confidence            8998753 24555432     35788999999999999985   467778889999      99999999999765421 


Q ss_pred             CCCCccccc-CCCceEEEEcCCcCCC-CCcCeeEEEEeCC
Q 018437          256 YPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWRTK  293 (356)
Q Consensus       256 ~~~~~~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~~  293 (356)
                      .+.....+. ....+.+..+++|+++ ....+|+++.+++
T Consensus       248 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~  287 (432)
T 3ei9_A          248 NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKK  287 (432)
T ss_dssp             CCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTT
T ss_pred             CCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChH
Confidence            010011111 1245677888999875 5567899887654

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.76  E-value=1.6e-17  Score=158.88  Aligned_cols=203  Identities=12%  Similarity=0.002  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE--eCChhHHHHHHHHHHHHHHHHHHH
Q 018437           70 PECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--TVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        70 ~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+.+++...... ....|....+..++++++.+++.+.+|.+.+.   ..+++  |+||++|+.+++.+++...     
T Consensus        49 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~~i~~v~t~G~~~al~~~~~~l~~~~-----  120 (401)
T 7aat_A           49 NCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKS---GRYVTVQGISGTGSLRVGANFLQRFF-----  120 (401)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT---TCEEEEEEEHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCcccccc---CceEEEecCcchHHHHHHHHHHHHhc-----
Confidence            5677877766542 22334445577788888777777665643111   23655  9999999999987765320     


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHh---hCceEEEEecCCCccccc---C
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVD---ENTICVAAILGSTLTGEF---E  219 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~---~  219 (356)
                           ..+++|+++.++|..+...++..|++++.+|++. +++.+|++.+++.+.   +++++|++++|+||||.+   +
T Consensus       121 -----~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~  195 (401)
T 7aat_A          121 -----KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQE  195 (401)
T ss_dssp             -----TTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHH
T ss_pred             -----cCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHH
Confidence                 1157899999999999999999999999999853 358999998887775   467899999999999976   4


Q ss_pred             CHHHHHHHHHHhhhccCCCCcEEEecccccccccccC-CCCccc-c-cCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLEWD-F-RLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       220 ~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~-~-~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ++++|+++|+++      ++++++|++|..+...-.. +..... + ....-..+..+++|.++ ....+|+++..
T Consensus       196 ~l~~i~~~~~~~------~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~  265 (401)
T 7aat_A          196 QWKELASVVKKR------NLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVI  265 (401)
T ss_dssp             HHHHHHHHHHHT------TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEE
T ss_pred             HHHHHHHHHHhC------CcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEE
Confidence            578899999999      9999999999875431000 000000 0 12234556778999874 23448998863

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.62  E-value=3.7e-20  Score=177.02  Aligned_cols=204  Identities=11%  Similarity=-0.029  Sum_probs=150.7

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.+......|...  ..++++++.+++++.+|.+.+.   ..+++|+||++++..++.++..+       
T Consensus        45 ~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~---~~v~~~~g~~~a~~~~~~~~~~~-------  112 (392)
T 3b1d_A           45 VMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDK---EDIVFVEGVVPAISIAIQAFTKE-------  112 (392)
Confidence            34678888877765433333322  6778888888888888854321   34789999999999999887543       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-C-ccccCHHHHHHHHh-hCceEEEEecCCCcccccC---CH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-G-YYVMNPVKAVELVD-ENTICVAAILGSTLTGEFE---DV  221 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~-~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~---~i  221 (356)
                            +++|+++.++|..+...++..|++++.+|+++ + ++.+|+++|+++++ +++++|++++++||||.+.   ++
T Consensus       113 ------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l  186 (392)
T 3b1d_A          113 ------GEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVL  186 (392)
Confidence                  46899999999999999999999999999853 2 36799999999997 6788899999999999985   48


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccC--CCceEEEEcCCcCCC-CCcCeeEEEEeCCCC
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL--PLVKSINVSGHKYGL-VYAGVGWVVWRTKDD  295 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~Ds~~~~~hK~l~-~P~g~g~l~~~~~~~  295 (356)
                      ++|.++|+++      ++++++|++|+.+...--.......+..  ...+.+..+.+|+++ ....+|+++..+++.
T Consensus       187 ~~l~~~~~~~------~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~  257 (392)
T 3b1d_A          187 EQIGHLCQKH------HVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTL  257 (392)
Confidence            9999999999      9999999999876542000000011111  234456677999985 556789988765433

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.76  E-value=8.2e-18  Score=161.59  Aligned_cols=229  Identities=14%  Similarity=0.064  Sum_probs=150.3

Q ss_pred             HHHHHHHHhhhcC-CCCcccccccCCCCh---HHHHHHHHHHhcccC-----CCcccCcchHHHHHHHHHHHHHHhCCCC
Q 018437           42 AYQVINDELMLDG-NPRLNLASFVTTWME---PECDKLVMASINKNY-----VDMDEYPVTTELQNRCVNMIAHLFNTPV  112 (356)
Q Consensus        42 i~~~~~~~~~~~~-~~~~~l~~~~~~~~~---~~v~~~i~~~~~~~~-----~~~~~~~~~~~le~~~~~~la~l~g~~~  112 (356)
                      +.+.+.+...... ...++|+.+.+...+   +.+.+++.+.+.+..     ..|....+..++++++.+++.+.+|++.
T Consensus        17 ~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~   96 (417)
T 3g7q_A           17 ITRLMEDLNDGLRTPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDI   96 (417)
T ss_dssp             HHHHHHHHHC-----CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHhhccCCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCC
Confidence            4444444443322 233567776665533   345666655543221     2455556788999999999988888764


Q ss_pred             CCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEec-CCCcchHHHHHHh----hCCeeEEEEecCC-
Q 018437          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG-ANVQVCWEKFARY----FEVELKEVKLEEG-  186 (356)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s-~~~h~s~~~~~~~----~G~~v~~v~~~~~-  186 (356)
                      +.   ..+++|+|+++|+.+++.++..+        |.+.+..+|+++ .++|..+...+..    .+..+..++++.+ 
T Consensus        97 ~~---~~i~~t~G~t~al~~~~~~l~~~--------gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (417)
T 3g7q_A           97 EP---QNIALTNGSQSAFFYLFNLFAGR--------RADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ  165 (417)
T ss_dssp             CG---GGEEEESCHHHHHHHHHHHHSBC------------CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE
T ss_pred             Cc---ccEEEeCCcHHHHHHHHHHHcCC--------CccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc
Confidence            22   45899999999999999887542        100111278888 8999888776532    2334444444432 


Q ss_pred             -ccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc
Q 018437          187 -YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD  262 (356)
Q Consensus       187 -~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~  262 (356)
                       ++.+|+++|+  +++++++|++++|+||||.+.|   +++|.++|+++      ++++|+|++|+.+........... 
T Consensus       166 ~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~------~~~li~De~~~~~~~~~~~~~~~~-  236 (417)
T 3g7q_A          166 FKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQH------NIPLVIDNAYGVPFPGIIFSEARP-  236 (417)
T ss_dssp             EEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTCTTTTCCBCSCCCC-
T ss_pred             cccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHc------CCEEEEeCCCcccccccccccccc-
Confidence             4689999998  6778999999999999999977   88999999999      999999999985332111011111 


Q ss_pred             ccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          263 FRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       263 ~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                       ...+.+.+..+++|++....++|+++..
T Consensus       237 -~~~~~~i~~~s~sK~~~~G~r~G~~~~~  264 (417)
T 3g7q_A          237 -LWNPNIILCMSLSKLGLPGSRCGIIIAN  264 (417)
T ss_dssp             -CCCTTEEEEEESGGGTCTTSCCEEEECC
T ss_pred             -CCCCCEEEEEechhccCCCcceEEEEeC
Confidence             1235677788899986666778988753

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.76  E-value=1.8e-18  Score=167.23  Aligned_cols=193  Identities=11%  Similarity=0.028  Sum_probs=143.9

Q ss_pred             HHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHh-CCCCCCCCCCC---eEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           73 DKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLF-NTPVADDKTAV---GVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        73 ~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~---~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+++.+.+.. ....|....+..++++++.+++.+.. ++++     ..   +++|+||++|+..++.++.++       
T Consensus        69 ~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~-----~~~~~i~~t~g~~~al~~~~~~l~~~-------  136 (430)
T 2x5f_A           69 LDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSI-----DNMSRPIVTNALTHGLSLVGDLFVNQ-------  136 (430)
T ss_dssp             HHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCG-----GGBCCCEEESHHHHHHHHHHHHHCCT-------
T ss_pred             HHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCC-----CccceEEEcCCchHHHHHHHHHHhCC-------
Confidence            5555444433 23344444467788888777776653 3432     34   789999999999999887532       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHh-hCCeeEEEEecCCccccCHHHHHHHHhh---CceEEEEecCCCcccccCC---
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARY-FEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFED---  220 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~-~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~---  220 (356)
                            +++|+++.++|..+...++. .|++++.+|++++++.+|+++|++++++   ++++|++++|+||||.+.|   
T Consensus       137 ------gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~  210 (430)
T 2x5f_A          137 ------DDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKE  210 (430)
T ss_dssp             ------TCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHH
T ss_pred             ------CCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHH
Confidence                  57899999999999999999 9999999999763378999999999987   7899999999999999987   


Q ss_pred             HHHHHHHHHH-----hhhccCCCCcEEEecccccccccccCCCCc-c-ccc-CCCc---eEEEEcCCcCCCCC-cCeeEE
Q 018437          221 VKLLHDLLTK-----KNEETGWDTPIHVDAASGGFIAPFLYPDLE-W-DFR-LPLV---KSINVSGHKYGLVY-AGVGWV  288 (356)
Q Consensus       221 i~~I~~i~~~-----~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~-~~~-~~~~---Ds~~~~~hK~l~~P-~g~g~l  288 (356)
                      +++|.++|++     +      ++++++|++|+.+...- .+... . .+. ....   +.+..++||+++.| ..+|++
T Consensus       211 l~~i~~~~~~~~~~~~------~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~  283 (430)
T 2x5f_A          211 VTTIVEAIKALANKGT------KVIAVVDDAYYGLFYED-VYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFM  283 (430)
T ss_dssp             HHHHHHHHHHHHHTTC------EEEEEEECTTTTCBCSS-SCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEE
T ss_pred             HHHHHHHHHhhhhccC------CEEEEEehhcccccCCc-ccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEE
Confidence            8899999999     9      99999999998765410 00011 1 222 1233   56677899988533 457999


Q ss_pred             EE
Q 018437          289 VW  290 (356)
Q Consensus       289 ~~  290 (356)
                      ++
T Consensus       284 ~~  285 (430)
T 2x5f_A          284 TF  285 (430)
T ss_dssp             EE
T ss_pred             EE
Confidence            88

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.76  E-value=1.3e-18  Score=166.55  Aligned_cols=246  Identities=13%  Similarity=0.016  Sum_probs=160.2

Q ss_pred             CCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCChhHHHHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      ++++++.+.+++.++.+........++...++.+++++++++++|++..    ..+++ |+|||+|+..++.++.+    
T Consensus        48 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~i~~~t~g~t~al~~~~~~l~~----  119 (398)
T 2fyf_A           48 PSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDG----YEVILGNGGATAFWDAAAFGLID----  119 (398)
T ss_dssp             SCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT----CEEEEEETCHHHHHHHHHHHTCS----
T ss_pred             CCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEeCCchhHHHHHHHHHhcC----
Confidence            4455677888776532111111123455567788999999999999731    24777 99999999999987742    


Q ss_pred             HHHhcCCCCCCCeEEecCCCcch-HHHHHHhh--CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCC
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVC-WEKFARYF--EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED  220 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s-~~~~~~~~--G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~  220 (356)
                                +..++++...|.. +...+...  |++++.||++. ....+.     .+++++++|++++++||||.+.|
T Consensus       120 ----------~gv~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~  183 (398)
T 2fyf_A          120 ----------KRSLHLTYGEFSAKFASAVSKNPFVGEPIIITSDP-GSAPEP-----QTDPSVDVIAWAHNETSTGVAVA  183 (398)
T ss_dssp             ----------SCEEEEECSHHHHHHHHHHHHCTTSCCCEEEECCT-TCCCCC-----CCCTTCSEEEEESEETTTTEECC
T ss_pred             ----------CCeEEEeCCHHHHHHHHHHHHhCCCCceEEEecCC-CCCCCc-----cccCCCCEEEEeCcCCCcceecc
Confidence                      1224444454532 22345555  88999999873 233332     25678999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccc
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL  300 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~  300 (356)
                      +++|.++   +      ++++|+|++|+.+..+       .++.  .+|.++.++||+++.|.|+|+++++++ .. +.+
T Consensus       184 ~~~i~~~---~------~~~vivD~a~~~~~~~-------~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~-~~-~~l  243 (398)
T 2fyf_A          184 VRRPEGS---D------DALVVIDATSGAGGLP-------VDIA--ETDAYYFAPQKNFASDGGLWLAIMSPA-AL-SRI  243 (398)
T ss_dssp             CCCCTTC---C-------CEEEEECTTTTTTSC-------CCGG--GCSEEEECTTSTTCSCSSEEEEEECHH-HH-HHH
T ss_pred             hHHhhhh---c------CCeEEEEeccccCCcc-------cCcc--cCcEEEEecCcccCCCCceEEEEECHH-HH-HHh
Confidence            9998887   7      9999999999865442       2222  479999999999877767999888643 22 111


Q ss_pred             cc-------ccCCCCCCC--C---CccccCCCChhHHHHHHHHHHHhCHHH-HHHHHHHHHhccCcc
Q 018437          301 VF-------HINYLGSDQ--P---TFTLNFSKGSSQIIAQYYQFIRLGFEE-ITFTFISSLKVCPFL  354 (356)
Q Consensus       301 ~~-------~~~~~~~~~--~---~~~~~~tr~~~~~~~~~~~l~~lg~~G-~~~~~~~~~~~a~~l  354 (356)
                      ..       ...|.....  .   .....+|.+....+++.++++.+..+| ++++.++..+++++|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l  310 (398)
T 2fyf_A          244 EAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRL  310 (398)
T ss_dssp             HHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             hcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            00       011221100  0   001124666666677788888777666 777777777776655

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.75  E-value=2e-17  Score=159.94  Aligned_cols=155  Identities=16%  Similarity=0.033  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH----H
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----R  172 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~----~  172 (356)
                      ..++++.+++++|.+.       .+++++|++|+..++.++..+             +++|+++.++|.++...+    +
T Consensus        60 ~~~l~~~la~~~g~~~-------~v~~~sGt~A~~~~l~~~~~~-------------gd~vi~~~~~~~~~~~~~~~~~~  119 (421)
T 2ctz_A           60 VDVLEKRLAALEGGKA-------ALATASGHAAQFLALTTLAQA-------------GDNIVSTPNLYGGTFNQFKVTLK  119 (421)
T ss_dssp             HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEECSCCCHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHhCCCc-------eEEecCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHHHHHHHH
Confidence            3456677899999863       466677799999999876332             579999999999877665    6


Q ss_pred             hhCCeeEEE-EecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccc-ccc
Q 018437          173 YFEVELKEV-KLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS-GGF  250 (356)
Q Consensus       173 ~~G~~v~~v-~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~-~~~  250 (356)
                      ..|++++.+ +.+      |+++|++++++++++|++++++|++|.+.|+++|.++|+++      |+++|+|++| +.+
T Consensus       120 ~~g~~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~------g~~livD~~~~~~g  187 (421)
T 2ctz_A          120 RLGIEVRFTSREE------RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREK------GVALIVDNTFGMGG  187 (421)
T ss_dssp             HTTCEEEECCTTC------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECGGGGGG
T ss_pred             HcCCEEEEECCCC------CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECCccccc
Confidence            779988888 543      79999999999999999999999999999999999999999      9999999999 644


Q ss_pred             cccccCCCCcccccCCCceEEEEcCCcCCCCCcC-eeEEEEe
Q 018437          251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWR  291 (356)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l~~~  291 (356)
                      ..    .. ...   .++|.++.++||++++|.+ +|.+++.
T Consensus       188 ~~----~~-~~~---~~~Di~~~s~~K~l~~~g~~~G~~~~~  221 (421)
T 2ctz_A          188 YL----LR-PLA---WGAALVTHSLTKWVGGHGAVIAGAIVD  221 (421)
T ss_dssp             TS----CC-GGG---GTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred             cc----CC-ccc---cCCeEEEECCcccccCCCCcEEEEEEe
Confidence            21    11 122   3689999999999988763 6777775

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.75  E-value=4.9e-18  Score=163.40  Aligned_cols=154  Identities=13%  Similarity=-0.021  Sum_probs=122.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHHhh
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARYF  174 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~----~~~~~  174 (356)
                      ++++.+++++|.+.       .+++++|++|+..++. +.++             +++|+++.+.|.+...    .++..
T Consensus        71 ~l~~~la~~~g~~~-------~i~~~sG~~ai~~~~~-l~~~-------------gd~Vl~~~~~y~~~~~~~~~~~~~~  129 (403)
T 3cog_A           71 CLEKAVAALDGAKY-------CLAFASGLAATVTITH-LLKA-------------GDQIICMDDVYGGTNRYFRQVASEF  129 (403)
T ss_dssp             HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHT-TSCT-------------TCEEEEESSCCHHHHHHHHHTGGGG
T ss_pred             HHHHHHHHHhCCCc-------EEEECCHHHHHHHHHH-HhCC-------------CCEEEEeCCCcchHHHHHHHHHHHc
Confidence            44556888888862       4556666899988877 4321             5789999999987444    34567


Q ss_pred             CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCC-CcEEEeccccccccc
Q 018437          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD-TPIHVDAASGGFIAP  253 (356)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~-~~l~vD~a~~~~~~~  253 (356)
                      |++++.+|.+      |+++|++++++++++|++++++||+|.+.|+++|.++|+++      + +++++|++|+.+.. 
T Consensus       130 G~~v~~v~~~------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~------g~~~livD~~~~~~~~-  196 (403)
T 3cog_A          130 GLKISFVDCS------KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKH------GDIILVVDNTFMSPYF-  196 (403)
T ss_dssp             TCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSS------SCCEEEEECTTTCTTT-
T ss_pred             CCEEEEECCC------CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHc------CCCEEEEECCCccccc-
Confidence            9999888864      78999999999999999999999999999999999999999      9 99999999987543 


Q ss_pred             ccCCCCcccccCCCceEEEEcCCcCCCCCcC--eeEEEEeCC
Q 018437          254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTK  293 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l~~~~~  293 (356)
                       ..   +.+   .++|.+..|+||++++|.+  +|+++.+++
T Consensus       197 -~~---~~~---~~~div~~S~sK~~~g~~~~~~G~v~~~~~  231 (403)
T 3cog_A          197 -QR---PLA---LGADISMYSATKYMNGHSDVVMGLVSVNCE  231 (403)
T ss_dssp             -CC---TTT---TTCSEEEEETTTTTTCSSCCCCEEEEECCH
T ss_pred             -CC---ccc---cCCeEEEEcChhhccCCCCCeEEEEEECcH
Confidence             11   222   3689999999999988886  499887643

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.75  E-value=8.8e-18  Score=161.43  Aligned_cols=200  Identities=11%  Similarity=0.011  Sum_probs=141.0

Q ss_pred             CChHHHHHHHHH-Hhccc-CCCcccCcchHHHHHHHHHHHHHHhCC--CCCCCCCCCeEE--eCChhHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMA-SINKN-YVDMDEYPVTTELQNRCVNMIAHLFNT--PVADDKTAVGVG--TVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        67 ~~~~~v~~~i~~-~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~--t~Ggt~a~~~al~~~~~~  140 (356)
                      ++++.+.+++.+ .+... ...|....+..++++++.+++.+..|.  ++     ..+++  |+||++|+.+++..+..-
T Consensus        47 ~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~-----~~i~~~~t~g~~~a~~~~~~~~~~~  121 (412)
T 1yaa_A           47 WVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQE-----DRVISVQSLSGTGALHISAKFFSKF  121 (412)
T ss_dssp             CCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-----TCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCc-----ceEEEEeccchHhHHHHHHHHHHHh
Confidence            345788898888 76532 223444556778888877777654453  22     24788  999999999885443321


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEe-cCCccccCHHHHHHHHhhC---ceEEEEecCCCccc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDEN---TICVAAILGSTLTG  216 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~~---~~~v~~~~~~~~tG  216 (356)
                                 ..+++|+++.++|..+...++..|++++.+|+ +++++.+|+++|+++++++   ++++++++++||||
T Consensus       122 -----------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG  190 (412)
T 1yaa_A          122 -----------FPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTG  190 (412)
T ss_dssp             -----------CTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTC
T ss_pred             -----------CCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCC
Confidence                       01468999999999999999999999999998 5445899999999999764   45555699999999


Q ss_pred             ccCC---HHHHHHHHHHhhhccCCCCcEEEeccccccccccc-CCCCcc-ccc-CCC---ceEEEEcCCcCCCCCcC--e
Q 018437          217 EFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEW-DFR-LPL---VKSINVSGHKYGLVYAG--V  285 (356)
Q Consensus       217 ~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~~-~~~-~~~---~Ds~~~~~hK~l~~P~g--~  285 (356)
                      .+.+   +++|.++|+++      |+++++|++|+++...-. .+.... ++. ...   -+.+..+++|.+ +|.|  +
T Consensus       191 ~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Glri  263 (412)
T 1yaa_A          191 LDPTSEQWVQIVDAIASK------NHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYGERV  263 (412)
T ss_dssp             CCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGGGCE
T ss_pred             CCCCHHHHHHHHHHHHHC------CCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCC-CCcCCcc
Confidence            9854   66789999999      999999999976543100 000011 211 111   345677899987 4555  7


Q ss_pred             eEEE
Q 018437          286 GWVV  289 (356)
Q Consensus       286 g~l~  289 (356)
                      |+++
T Consensus       264 G~~~  267 (412)
T 1yaa_A          264 GCFH  267 (412)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            8887

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.75  E-value=2.3e-17  Score=160.73  Aligned_cols=217  Identities=12%  Similarity=0.048  Sum_probs=142.5

Q ss_pred             hcCCCC-cccccccC-C-----CChHHHHHHHHHHh--c-ccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 018437           52 LDGNPR-LNLASFVT-T-----WMEPECDKLVMASI--N-KNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGV  121 (356)
Q Consensus        52 ~~~~~~-~~l~~~~~-~-----~~~~~v~~~i~~~~--~-~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~  121 (356)
                      .++++. ++|+.+.+ .     +..+.+.+++....  + .....|....+..++++++.+++   +|.+........++
T Consensus        45 ~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~~~~~~~~~~i~  121 (448)
T 3meb_A           45 ADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGKDSKAAQEGRIA  121 (448)
T ss_dssp             HCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCTTCHHHHTTCEE
T ss_pred             hCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCCCccccCcCcEE
Confidence            445554 56655554 2     23366777755544  1 12223444456666766655554   37762000012477


Q ss_pred             E--eCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHH----hhCCeeEEEEe-cCC-ccccCHH
Q 018437          122 G--TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR----YFEVELKEVKL-EEG-YYVMNPV  193 (356)
Q Consensus       122 ~--t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~----~~G~~v~~v~~-~~~-~~~~d~~  193 (356)
                      +  |+||++|+.+++......           ..+++|+++.++|..+...++    ..|++++.+|+ +++ ++.+|++
T Consensus       122 ~~~t~ggt~al~l~~~~~~~~-----------~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e  190 (448)
T 3meb_A          122 SCQSLSGTGSLHIGFEFLHLW-----------MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFS  190 (448)
T ss_dssp             EEEESHHHHHHHHHHHHHHHH-----------CTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHH
T ss_pred             EEECCcHHHHHHHHHHHHHHh-----------CCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHH
Confidence            8  999999998754322211           015789999999999999999    99999999999 554 5899999


Q ss_pred             HHHHHHhh---CceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccC-CCCcc-cc-c
Q 018437          194 KAVELVDE---NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLEW-DF-R  264 (356)
Q Consensus       194 ~L~~~i~~---~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~-~~-~  264 (356)
                      +|++++++   +++++++++++||||.+.+   +++|+++|+++      ++++++|++|+++...-.. +.... .+ .
T Consensus       191 ~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~------~~~li~Deay~~~~~~~~~~~~~~~~~~~~  264 (448)
T 3meb_A          191 NTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEK------KHIAFFDSAYQGFATGSFEADAFAVRMFVD  264 (448)
T ss_dssp             HHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTSSSCHHHHTHHHHHHHH
T ss_pred             HHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHC------CCEEEEecccccccCCCcccCchhHHHHhh
Confidence            99999984   5788889999999999866   55699999999      9999999999875541000 00000 11 1


Q ss_pred             CCCceEEEEcCCcCCCC-CcCeeEE
Q 018437          265 LPLVKSINVSGHKYGLV-YAGVGWV  288 (356)
Q Consensus       265 ~~~~Ds~~~~~hK~l~~-P~g~g~l  288 (356)
                      ...-..+..|++|.++. ...+|++
T Consensus       265 ~~~~~i~~~S~SK~~g~~G~RiG~l  289 (448)
T 3meb_A          265 AGVEVLVAQSFSKNFGLYGERIGCL  289 (448)
T ss_dssp             TTCCEEEEEECTTTSCCGGGCCEEE
T ss_pred             cCCcEEEEecccccCCCccccceee
Confidence            11223456779998742 3458887

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.75  E-value=1e-17  Score=163.94  Aligned_cols=156  Identities=12%  Similarity=0.073  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH----H
Q 018437           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----A  171 (356)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~----~  171 (356)
                      ..+++++++++++|.+.       .++++||++|+..++. +.+             .+++|+++.+.|.++...    +
T Consensus       134 ~~~~l~~~la~~~g~~~-------~i~~~sGt~al~~~l~-~~~-------------~Gd~Vi~~~~~y~~~~~~~~~~~  192 (464)
T 1ibj_A          134 TRDALESLLAKLDKADR-------AFCFTSGMAALSAVTH-LIK-------------NGEEIVAGDDVYGGSDRLLSQVV  192 (464)
T ss_dssp             HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHT-TSC-------------TTCEEEEESSCCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhCCCe-------EEEECCHHHHHHHHHH-HhC-------------CCCEEEEECCCchhHHHHHHHHH
Confidence            57788999999999753       6788888998876654 221             157899999999988754    5


Q ss_pred             HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccccc
Q 018437          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (356)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~  251 (356)
                      +..|++++.+|++      |+++|++++++++++|++++++||+|.+.|+++|.++|+++      |+++|+|++|..+.
T Consensus       193 ~~~G~~v~~v~~~------d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~------gi~livDea~~~g~  260 (464)
T 1ibj_A          193 PRSGVVVKRVNTT------KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQ------GALVLVDNSIMSPV  260 (464)
T ss_dssp             GGGTCEEEEECTT------SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTT------TCEEEEECTTTCTT
T ss_pred             HHcCCEEEEeCCC------CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHc------CCEEEEECCCcccc
Confidence            6679999888763      78999999998999999999999999999999999999999      99999999997543


Q ss_pred             ccccCCCCcccccCCCceEEEEcCCcCCCCCcCe--eEEEEeC
Q 018437          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRT  292 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~--g~l~~~~  292 (356)
                      .  .   .+.+   .++|.++.++||++++|.|+  |+++.++
T Consensus       261 ~--~---~~~~---~~~div~~S~sK~~~g~~Gl~~G~l~~~~  295 (464)
T 1ibj_A          261 L--S---RPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKG  295 (464)
T ss_dssp             T--C---CGGG---TTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred             c--C---Chhh---cCCEEEEECCcccccCCCCCcEEEEEECh
Confidence            2  1   1122   36899999999999888776  9998865

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.75  E-value=1e-17  Score=162.00  Aligned_cols=159  Identities=16%  Similarity=0.091  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEE---eCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC-CCcchHH----
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWE----  168 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~---t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~-~~h~s~~----  168 (356)
                      .+++.+.+++++|.+.       .++   +++|++||..++.++.++             +++|+++. +.|..+.    
T Consensus        76 ~~~Le~~lA~l~g~e~-------alv~p~~~sGt~A~~~al~all~p-------------GD~Vl~~~~~~y~~~~~~~g  135 (427)
T 3hvy_A           76 RDSLDRVYANIFNTES-------AFVRPHFVNGTHAIGAALFGNLRP-------------NDTMMSICGMPYDTLHDIIG  135 (427)
T ss_dssp             HHHHHHHHHHHHTCSE-------EEEETTCCSHHHHHHHHHHHTCCT-------------TCEEEECSSSCCGGGHHHHT
T ss_pred             HHHHHHHHHHHhCCCc-------eEEeCCCCcHHHHHHHHHHHhcCC-------------CCEEEEeCCCCchhHHHHhc
Confidence            3445566999999975       455   789999999988877543             57899988 8877655    


Q ss_pred             -------HHHHhhCCeeEEEEecCCccccCHHHHHHHHh--hCceEEEEec----CCCcccccCCHHHHHHHHHH--hhh
Q 018437          169 -------KFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNE  233 (356)
Q Consensus       169 -------~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~~~~v~~~~----~~~~tG~~~~i~~I~~i~~~--~~~  233 (356)
                             ..++..|++++.+|. + ++.+|+++|+++++  ++|++|++++    |+||+|.+.|+++|.++|++  +  
T Consensus       136 ~~~~~~~~~l~~~G~~~~~v~~-~-~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~--  211 (427)
T 3hvy_A          136 MDDSKKVGSLREYGVKYKMVDL-K-DGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNE--  211 (427)
T ss_dssp             CCTTCCSCCTGGGTCEEEECCC-B-TTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCS--
T ss_pred             cccchhhhHHHHcCCEEEEecC-C-CCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCC--
Confidence                   344567999999998 3 48999999999998  7899999999    99999999999999999999  8  


Q ss_pred             ccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCC---CcCeeEEEEe
Q 018437          234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV---YAGVGWVVWR  291 (356)
Q Consensus       234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~---P~g~g~l~~~  291 (356)
                          ++++++|++|+.++..   . .+..   .++|.++.+.||++++   |.| |+++.+
T Consensus       212 ----g~~livD~a~~~~~~~---~-~p~~---~gaDiv~~S~sK~lgg~g~~~G-G~i~~~  260 (427)
T 3hvy_A          212 ----NVIVFVDNCYGEFVEE---K-EPTD---VGADIIAGSLIKNIGGGIATTG-GYIAGK  260 (427)
T ss_dssp             ----SSEEEEECTTCTTTSS---S-CGGG---GTCSEEEEETTSGGGTTTCCSC-EEEEEC
T ss_pred             ----CCEEEEECCccccccC---C-CCcc---cCCeEEEECCcccccccccceE-EEEEEC
Confidence                9999999999876531   1 1122   3689999999999876   444 887764

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.75  E-value=2.3e-17  Score=162.92  Aligned_cols=186  Identities=11%  Similarity=0.016  Sum_probs=139.1

Q ss_pred             CCcccCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC
Q 018437           85 VDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV  163 (356)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~  163 (356)
                      ..|....+...+++++.+++++..| ++.+.   ..+++|+|+++++.+++.++.++        | +..++.|+++.+.
T Consensus       123 ~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~---~~i~~t~G~~~ai~~~~~~l~~~--------g-d~~~d~Vlv~~p~  190 (498)
T 3ihj_A          123 GSYSASQGVNCIREDVAAYITRRDGGVPADP---DNIYLTTGASDGISTILKILVSG--------G-GKSRTGVMIPIPQ  190 (498)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHTTTCCCCG---GGEEEESSHHHHHHHHHHHHCCC--------C-GGGSEEEEEEESC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhcCCCCCCc---ccEEEcCCHHHHHHHHHHHHcCC--------C-CCCCCEEEEeCCC
Confidence            3456667888999999999999885 65321   45899999999999998877532        0 0012489999999


Q ss_pred             cchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhh-----CceEEEEecCCCcccccC---CHHHHHHHHHHhhhc
Q 018437          164 QVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDE-----NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEE  234 (356)
Q Consensus       164 h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~-----~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~  234 (356)
                      |.++...++..|++++.++++++ +|.+|+++|++++++     ++++|++++|+||||.+.   ++++|.++|+++   
T Consensus       191 y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~---  267 (498)
T 3ihj_A          191 YPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE---  267 (498)
T ss_dssp             CTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH---
T ss_pred             chhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHc---
Confidence            99999999999999999999763 489999999999987     589999999999999994   577899999999   


Q ss_pred             cCCCCcEEEecccccccccccCCCCccccc-C---------CCceEE-EEcCCcCCC--CCcCeeEEEE
Q 018437          235 TGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L---------PLVKSI-NVSGHKYGL--VYAGVGWVVW  290 (356)
Q Consensus       235 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~---------~~~Ds~-~~~~hK~l~--~P~g~g~l~~  290 (356)
                         ++++++|++|+.+...  .......+. .         ..+..+ ..+++|.+.  +....|++++
T Consensus       268 ---~~~li~De~y~~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~  331 (498)
T 3ihj_A          268 ---KLFLLADEVYQDNVYS--PDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEV  331 (498)
T ss_dssp             ---TCEEEEECTTTTCBCC--TTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEE
T ss_pred             ---CcEEEEEcCccccccC--CCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEE
Confidence               9999999999876552  110111111 0         112234 447899874  5677888875

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.75  E-value=3.4e-17  Score=156.36  Aligned_cols=198  Identities=12%  Similarity=-0.050  Sum_probs=134.8

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.+.........+  ......++++++++++|++.     ..+++|+||++|+..++.+++.. .     
T Consensus        62 ~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~~a~~~al~~~~~~-~-----  128 (395)
T 1vef_A           62 GNPEVVEAVKRQAETLMAMPQTL--PTPMRGEFYRTLTAILPPEL-----NRVFPVNSGTEANEAALKFARAH-T-----  128 (395)
T ss_dssp             TCHHHHHHHHHHHHHCCCCCTTS--CCHHHHHHHHHHHHTSCTTE-----EEEEEESSHHHHHHHHHHHHHHH-H-----
T ss_pred             CCHHHHHHHHHHHHhCCCCcccc--CCHHHHHHHHHHHHhcCCCc-----CEEEEcCcHHHHHHHHHHHHHHH-h-----
Confidence            45788888887775432111112  23456678888999998754     24899999999999999876521 0     


Q ss_pred             cCCCCCCCeEEecCCCc-chHHHHHHhhCCeeE---EEEecCCc---cccCHHHHHHHHhhCceEEEEecCCCcccccCC
Q 018437          148 QGKPYDKPNIVTGANVQ-VCWEKFARYFEVELK---EVKLEEGY---YVMNPVKAVELVDENTICVAAILGSTLTGEFED  220 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h-~s~~~~~~~~G~~v~---~v~~~~~~---~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~  220 (356)
                           .+++|++++++| .++..++...|.+++   .+|+..+.   -..|+++|++++++++++|+++.++|+||.+.|
T Consensus       129 -----~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  203 (395)
T 1vef_A          129 -----GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPA  203 (395)
T ss_dssp             -----SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEEC
T ss_pred             -----CCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCC
Confidence                 145777777765 455566666676521   11221110   024899999999888889888888889999877


Q ss_pred             ----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          221 ----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       221 ----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                          +++|.++|+++      |+++|+|++|+++..  .......+.....+|.+  +.||+++++.++|+++++++
T Consensus       204 ~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~--~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~  270 (395)
T 1vef_A          204 TPEFLRAAREITQEK------GALLILDEIQTGMGR--TGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREE  270 (395)
T ss_dssp             CHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHH
T ss_pred             CHHHHHHHHHHHHHc------CCEEEEEecccCCcc--CCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHH
Confidence                99999999999      999999999986321  11111112212246766  45999888889999998753

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.75  E-value=8.5e-18  Score=167.42  Aligned_cols=213  Identities=14%  Similarity=0.050  Sum_probs=151.1

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHh-C-CCCCCCCCCCeEEeCChhHHHHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLF-N-TPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~-g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (356)
                      |+.+.+..+++.+.+.+.+.+..+ .++....+..++++++.+++++.. + ++..  ....+++|+||++|+.+++.++
T Consensus       108 l~~g~~~~~~~~~v~a~~~~~~~~-~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~--~~~~i~~t~G~t~al~~~~~~l  184 (533)
T 3f6t_A          108 YCHTELGLNRDKVVAEWVNGAVAN-NYPVPDRCLVNTEKIINYFLQELSYKDANLA--EQTDLFPTEGGTAAIVYAFHSL  184 (533)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHTC-SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCG--GGEEEEEEEHHHHHHHHHHHHH
T ss_pred             ccCCCCCcCCcHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHHHHHhcCCCCCCC--CcceEEEECCHHHHHHHHHHHh
Confidence            333334444555544444444322 223345577889999999997763 3 3321  0124899999999999998874


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec---CCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE---EGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~---~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      ...        +.-..+++|+++.++|.++...++..|++++.++++   ++++.+|+++|++++++++++|++++|+||
T Consensus       185 ~~~--------~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NP  256 (533)
T 3f6t_A          185 AEN--------HLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNP  256 (533)
T ss_dssp             HHT--------TSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTT
T ss_pred             hhh--------hccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCC
Confidence            221        001125799999999999999999999999999985   345899999999999989999999999999


Q ss_pred             ccccCCHH---HHHHHHH-HhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEE
Q 018437          215 TGEFEDVK---LLHDLLT-KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVV  289 (356)
Q Consensus       215 tG~~~~i~---~I~~i~~-~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~  289 (356)
                      ||.+.+.+   +|.++|+ ++      ++++++|++|+.+...+    ....-.....+.+..|++|.++ ....+|+++
T Consensus       257 tG~~~~~~~l~~l~~la~~~~------~~~li~De~y~~~~~~~----~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~  326 (533)
T 3f6t_A          257 TSKEFDTNALNAIKQAVEKNP------KLMIISDEVYGAFVPNF----KSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIA  326 (533)
T ss_dssp             TCBCCCHHHHHHHHHHHHHCT------TCEEEEECTTGGGSTTC----CCHHHHSGGGEEEEEESHHHHTCGGGCEEEEE
T ss_pred             CccccCHHHHHHHHHHHHhCC------CCEEEEcCCccccccCc----cCHhhcCCCCEEEEecCcccCCCcccceEEEE
Confidence            99997766   7788888 68      99999999998755421    1111112345678889999874 223489998


Q ss_pred             EeCC
Q 018437          290 WRTK  293 (356)
Q Consensus       290 ~~~~  293 (356)
                      .+++
T Consensus       327 ~~~~  330 (533)
T 3f6t_A          327 LNEK  330 (533)
T ss_dssp             EESS
T ss_pred             ECcH
Confidence            8765

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.75  E-value=3e-17  Score=156.59  Aligned_cols=156  Identities=15%  Similarity=-0.033  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH----HH
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----AR  172 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~----~~  172 (356)
                      ..++++.+++++|.+.       .+++++|++|+..++.++..+             +++|+++.++|.+....    ++
T Consensus        54 ~~~l~~~la~~~~~~~-------~i~~~sGt~a~~~~~~~~~~~-------------g~~vl~~~~~~~~~~~~~~~~~~  113 (386)
T 1cs1_A           54 RDVVQRALAELEGGAG-------AVLTNTGMSAIHLVTTVFLKP-------------GDLLVAPHDCYGGSYRLFDSLAK  113 (386)
T ss_dssp             HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEecCCcHhHHHHHHHHHH
Confidence            3456667888888862       445566699999998877432             47899999999874443    46


Q ss_pred             hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc
Q 018437          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~  252 (356)
                      ..|++++.+|.+      |+++|++++++++++|++++++||+|.+.|+++|.++|+++      |+++|+|++|+.+..
T Consensus       114 ~~g~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~~~~  181 (386)
T 1cs1_A          114 RGCYRVLFVDQG------DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREV------GAVSVVDNTFLSPAL  181 (386)
T ss_dssp             TTSCEEEEECTT------CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTCTTT
T ss_pred             hcCCEEEEeCCC------CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCccccc
Confidence            678888888753      78999999999999999999999999999999999999999      999999999987654


Q ss_pred             cccCCCCcccccCCCceEEEEcCCcCCCCCcCe--eEEEEeC
Q 018437          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRT  292 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~--g~l~~~~  292 (356)
                      +     ....   .++|.++.++||++++|.+.  |+++.++
T Consensus       182 ~-----~~~~---~~~di~~~s~sK~~~~~~~~~~G~~~~~~  215 (386)
T 1cs1_A          182 Q-----NPLA---LGADLVLHSCTKYLNGHSDVVAGVVIAKD  215 (386)
T ss_dssp             C-----CGGG---GTCSEEEEETTTTTTCSSCCCCEEEEESS
T ss_pred             C-----Cccc---cCceEEEEcCcccccCCCCceeEEEEeCc
Confidence            2     1122   36899999999999888774  9988865

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.74  E-value=2e-17  Score=157.85  Aligned_cols=202  Identities=11%  Similarity=-0.049  Sum_probs=142.1

Q ss_pred             CChHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCC--CCCCCCCCCeEE--eCChhHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNT--PVADDKTAVGVG--TVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~--t~Ggt~a~~~al~~~~~~~  141 (356)
                      ++++.+.+++.+.+.. ....|...++..++++++.+++.+..+.  ++     ..+++  |+||++|+..++.++... 
T Consensus        44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~-----~~v~~~~~~g~~~a~~~~~~~~~~~-  117 (396)
T 2q7w_A           44 PVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALIND-----KRARTAQTPGGTGALRVAADFLAKN-  117 (396)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-----TCEEEEEESHHHHHHHHHHHHHHHH-
T ss_pred             cCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCcccc-----ccEEEEecccchhhHHHHHHHHHHh-
Confidence            3457888888776543 2233444556777777766666433221  22     23666  999999999998776431 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhh---CceEEEEecCCCcccc
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE---NTICVAAILGSTLTGE  217 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~  217 (356)
                                ..+++|+++.++|..+...++..|++++.+|.++ +++.+|+++|++++++   +++++++++++||||.
T Consensus       118 ----------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~  187 (396)
T 2q7w_A          118 ----------TSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGI  187 (396)
T ss_dssp             ----------SCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCC
T ss_pred             ----------CCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCC
Confidence                      0157899999999999999999999999999852 3489999999999975   4678888999999999


Q ss_pred             cCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-cc-CCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          218 FED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR-LPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       218 ~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      +.+   +++|.++|+++      ++++++|++|+++....-....... +. ...-+.+..+.+|.++ ....+|++++
T Consensus       188 ~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~  260 (396)
T 2q7w_A          188 DPTLEQWQTLAQLSVEK------GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTL  260 (396)
T ss_dssp             CCCHHHHHHHHHHHHHH------TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHC------CCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEE
Confidence            854   56899999999      9999999999875431000000111 11 1123466778999874 2334799986

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.74  E-value=6.1e-18  Score=163.10  Aligned_cols=209  Identities=13%  Similarity=0.035  Sum_probs=145.8

Q ss_pred             CcccccccCCC----ChHHHHHHHH--HHhccc--CCCc-ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChh
Q 018437           57 RLNLASFVTTW----MEPECDKLVM--ASINKN--YVDM-DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS  127 (356)
Q Consensus        57 ~~~l~~~~~~~----~~~~v~~~i~--~~~~~~--~~~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt  127 (356)
                      .++|+.+.+.+    .++.+.+++.  +.+...  ...| ...++..++++    .+++++++++     ..+++|+|++
T Consensus        27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~----~ia~~~~~~~-----~~i~~t~G~~   97 (423)
T 3ez1_A           27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARA----LFAGYLDVKA-----ENVLVWNNSS   97 (423)
T ss_dssp             CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHH----HHHHHTTSCG-----GGEEECSSCH
T ss_pred             eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHH----HHHHHhCCCh-----hhEEEeCCcH
Confidence            35566665552    2235666654  443311  1233 44445555554    4777788876     3589999999


Q ss_pred             HHHH--HHHHHHHH--HHHHHHHhcCCC----CCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHH
Q 018437          128 EAIM--LAGLAFKR--KWQQKRKEQGKP----YDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV  199 (356)
Q Consensus       128 ~a~~--~al~~~~~--~~~~~~~~~g~~----~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i  199 (356)
                      +++.  .++.++..  +        |..    ..+++|+++.++|..+...++..|++++.+|++++ + +|+++|++++
T Consensus        98 ~al~~~~~~~~l~~~~~--------g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l  167 (423)
T 3ez1_A           98 LELQGLVLTFALLHGVR--------GSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD-G-PDVDAVERLA  167 (423)
T ss_dssp             HHHHHHHHHHHHHTCCT--------TCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT-E-ECHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCC--------CccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC-C-CCHHHHHHHH
Confidence            9997  77776653  2        000    00368999999999999999999999999999874 4 9999999999


Q ss_pred             h--hCceEEEEe-cCCCcccccCCHH---HHHHHH-HHhhhccCCCCcEEEecccccccccccC-C-CCc---ccc----
Q 018437          200 D--ENTICVAAI-LGSTLTGEFEDVK---LLHDLL-TKKNEETGWDTPIHVDAASGGFIAPFLY-P-DLE---WDF----  263 (356)
Q Consensus       200 ~--~~~~~v~~~-~~~~~tG~~~~i~---~I~~i~-~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~-~~~---~~~----  263 (356)
                      .  +++++|+++ +++||||.+.+.+   +|.++| +++      ++++|+|++|+.+..  .. . ...   ..+    
T Consensus       168 ~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~~  239 (423)
T 3ez1_A          168 GTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAP------DFTIFADDAYRVHHL--VEEDRAEPVNFVVLARDA  239 (423)
T ss_dssp             HSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSST------TCEEEEECTTSSCBC--CSSSCCCCCCHHHHHHHH
T ss_pred             hhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhcc------CCEEEEECCcchhhc--CCCCCCCCcchhhhhhcc
Confidence            4  678888654 8999999998776   788888 888      999999999985322  11 0 000   111    


Q ss_pred             cCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          264 RLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       264 ~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      .....+.+..+++|+++.+.++|+++..+
T Consensus       240 ~~~~~~i~~~S~sK~~~~G~r~G~~~~~~  268 (423)
T 3ez1_A          240 GYPDRAFVFASTSKITFAGAGLGFVASSE  268 (423)
T ss_dssp             TCTTSEEEEEESTTTSCSSSSCEEEEECH
T ss_pred             CCCCeEEEEeCchhhccCCcceEEEEeCH
Confidence            12355677888999877788999988753

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.74  E-value=6.4e-17  Score=154.29  Aligned_cols=201  Identities=10%  Similarity=-0.045  Sum_probs=140.3

Q ss_pred             CChHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE--eCChhHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--TVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      ++++.+.+++.+.+.. ....|....+..++++++.+++... +.++     ..+++  |+||++|+..++.+++...  
T Consensus        44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~-----~~v~~~~~~g~~~a~~~~~~~~~~~~--  115 (394)
T 2ay1_A           44 PIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKS-----ETTATLATVGGTGALRQALELARMAN--  115 (394)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCG-----GGEEEEEEEHHHHHHHHHHHHHHHHC--
T ss_pred             cCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCc-----ccEEEEecCCchhHHHHHHHHHHhcC--
Confidence            3457888888776543 2223444456677777766555321 2233     24677  9999999999988776420  


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhC---ceEEEEecCCCcccccC
Q 018437          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDEN---TICVAAILGSTLTGEFE  219 (356)
Q Consensus       144 ~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~---~~~v~~~~~~~~tG~~~  219 (356)
                               .+++|+++.++|..+...++..|++++.+|++. +++.+|+++|++++++.   ++++++++++||||.+.
T Consensus       116 ---------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~  186 (394)
T 2ay1_A          116 ---------PDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANL  186 (394)
T ss_dssp             ---------TTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCC
T ss_pred             ---------CCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC
Confidence                     146899999999999999999999999999852 34889999999999753   56778899999999986


Q ss_pred             C---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-ccCCCce-EEEEcCCcCCC-CCcCeeEEEE
Q 018437          220 D---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVK-SINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       220 ~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~D-s~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      +   +++|.++|+++      ++++++|++|+++....-.+..... +...+.+ .+..+.+|+++ ....+|++++
T Consensus       187 ~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~  257 (394)
T 2ay1_A          187 TLDQWAEIASILEKT------GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLA  257 (394)
T ss_dssp             CHHHHHHHHHHHHHH------TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEE
T ss_pred             CHHHHHHHHHHHHHC------CCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEE
Confidence            5   56889999999      9999999999875431000000011 1111223 44667899875 3345799987

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.74  E-value=3.8e-17  Score=159.16  Aligned_cols=187  Identities=14%  Similarity=0.038  Sum_probs=134.0

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      ..+.+.+++.    .....+...++..+++    +.+++++|.+.       +++|+||++|+..++.++.++       
T Consensus        56 ~~~~~~~a~~----~~~~~y~~~~~~~~l~----~~la~~~~~~~-------~~~~~~gt~a~~~al~~l~~~-------  113 (456)
T 2ez2_A           56 MSDKQWAGMM----MGDEAYAGSENFYHLE----RTVQELFGFKH-------IVPTHQGRGAENLLSQLAIKP-------  113 (456)
T ss_dssp             CCHHHHHHHT----TCCCCSSSCHHHHHHH----HHHHHHHCCSE-------EEEESSHHHHHHHHHHHHCCT-------
T ss_pred             CCHHHHHHhh----cchhhcccChhHHHHH----HHHHHHhCCCc-------EEEeCCcHHHHHHHHHHhCCC-------
Confidence            3455555553    1222333444554554    45788888753       899999999999999887432       


Q ss_pred             cCCCCCCCeEEecCCCc-chHHHHHHhhCCeeEEEEecCC---------ccccCHHHHHHHHhhCc----eEEEEecCCC
Q 018437          148 QGKPYDKPNIVTGANVQ-VCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDENT----ICVAAILGST  213 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h-~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~~~----~~v~~~~~~~  213 (356)
                            ++  +++.++| .++..++...|++++.++++++         ++.+|+++|++++++++    ++|++++|+|
T Consensus       114 ------gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n  185 (456)
T 2ez2_A          114 ------GQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVN  185 (456)
T ss_dssp             ------TC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBT
T ss_pred             ------CC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCC
Confidence                  34  7778888 7888899999999999998732         26899999999998765    8899999998


Q ss_pred             -cccccCC---HHHHHHHHHHhhhccCCCCcEEEeccccccc--------ccccCCCCcc----cccCCCceEEEEcCCc
Q 018437          214 -LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFI--------APFLYPDLEW----DFRLPLVKSINVSGHK  277 (356)
Q Consensus       214 -~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~--------~~~~~~~~~~----~~~~~~~Ds~~~~~hK  277 (356)
                       ++|.+.+   +++|.++|+++      |+++|+|++|+.+.        ..+ .+....    .+. ...|.+++|+||
T Consensus       186 ~ptG~~~~~~~l~~i~~la~~~------~i~li~De~~~~g~~~~~~~~~~~~-~g~~~~~~~~~~~-~~~d~~~~S~kk  257 (456)
T 2ez2_A          186 LAGGQPVSMANMRAVRELTEAH------GIKVFYDATRCVENAYFIKEQEQGF-ENKSIAEIVHEMF-SYADGCTMSGKK  257 (456)
T ss_dssp             TTTSBCCCHHHHHHHHHHHHHT------TCCEEEECTTHHHHHHHHHHHSTTC-TTSCHHHHHHHHH-TTCSEEEEETTT
T ss_pred             CCCCccCCHHHHHHHHHHHHHc------CCeEEEEcccccccccccccccccc-CCcchhhhhhhhc-ccCCEEEEeCcc
Confidence             9999866   99999999999      99999999998631        111 111100    011 235888888999


Q ss_pred             CCCCCcCeeEEEEeCC
Q 018437          278 YGLVYAGVGWVVWRTK  293 (356)
Q Consensus       278 ~l~~P~g~g~l~~~~~  293 (356)
                      +++.| ..|+++.+++
T Consensus       258 ~~~~~-~gG~~~~~~~  272 (456)
T 2ez2_A          258 DCLVN-IGGFLCMNDD  272 (456)
T ss_dssp             TTCCS-SCEEEEESCH
T ss_pred             cCCCC-ceeEEEECCH
Confidence            97655 4688876544

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.74  E-value=2.6e-17  Score=159.03  Aligned_cols=181  Identities=17%  Similarity=0.032  Sum_probs=132.7

Q ss_pred             CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHH--HHHHHHHHHHHHHHHhcCC-----CCCCCeEE
Q 018437           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM--LAGLAFKRKWQQKRKEQGK-----PYDKPNIV  158 (356)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~--~al~~~~~~~~~~~~~~g~-----~~~~~~vi  158 (356)
                      .|....+..+++++    +++++++++     ..+++|+|+++++.  .++.++.+..      +|.     ...+++|+
T Consensus        73 ~Y~~~~g~~~lr~~----ia~~~~~~~-----~~i~~t~G~~~al~~~~~~~~l~~~~------~g~~~~~~~~~gd~V~  137 (427)
T 3ppl_A           73 NYGGLDGIVDIRQI----WADLLGVPV-----EQVLAGDASSLNIMFDVISWSYIFGN------NDSVQPWSKEETVKWI  137 (427)
T ss_dssp             SSCCSSCCHHHHHH----HHHHHTSCG-----GGEEECSSCHHHHHHHHHHHHHHHCC------TTCSSCGGGSSCCEEE
T ss_pred             CCCCCCCcHHHHHH----HHHHhCCCc-----ceEEEeCCcHHHHHHHHHHHHHhccC------CcccccccCCCCCEEE
Confidence            34444455555555    666678876     35899999999994  6776665400      000     00147899


Q ss_pred             ecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHh-hCceEEEEe-cCCCcccccCCHH---HHHHHH-HHhh
Q 018437          159 TGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAI-LGSTLTGEFEDVK---LLHDLL-TKKN  232 (356)
Q Consensus       159 ~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~-~~~~~tG~~~~i~---~I~~i~-~~~~  232 (356)
                      ++.++|..+...++..|++++.+|++++ + +|+++|+++++ +++++|+++ +++||||.+.+.+   +|.++| +++ 
T Consensus       138 v~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~-  214 (427)
T 3ppl_A          138 CPVPGYDRHFSITERFGFEMISVPMNED-G-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAP-  214 (427)
T ss_dssp             EEESCCHHHHHHHHHTTCEEEEEEEETT-E-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST-
T ss_pred             EcCCCcHHHHHHHHHcCCEEEEeCCCCC-C-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcC-
Confidence            9999999999999999999999999875 4 99999999995 578888766 8899999998877   888888 889 


Q ss_pred             hccCCCCcEEEecccccccccccCCC-Cccccc-------CCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          233 EETGWDTPIHVDAASGGFIAPFLYPD-LEWDFR-------LPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       233 ~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~~~~-------~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                           ++++|+|++|+.+.+.  ... ...++.       ..+.+.+..+++|+++.+.++|+++..
T Consensus       215 -----~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~  274 (427)
T 3ppl_A          215 -----DFRVVWDNAYAVHTLT--DEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTS  274 (427)
T ss_dssp             -----TCEEEEECTTTTCBSS--SCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECC
T ss_pred             -----CCEEEEECCCcccccC--CCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcC
Confidence                 9999999999874331  111 111111       235667788899997777889988764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.74  E-value=2e-17  Score=160.36  Aligned_cols=164  Identities=15%  Similarity=0.137  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC-CCcchHHHHHH--
Q 018437           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWEKFAR--  172 (356)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~-~~h~s~~~~~~--  172 (356)
                      ..+++.+++++++|.+...   . .++.++|++|+..++.++.++             +++|+++. +.|.++...+.  
T Consensus        66 ~~~~l~~~la~~~g~~~~~---~-~i~~~sGt~Ai~~al~al~~~-------------Gd~Vl~~~~~~y~~~~~~~~l~  128 (431)
T 3ht4_A           66 GRDTLEKVYADVFGAEAGL---V-RPQIISGTHAISTALFGILRP-------------GDELLYITGKPYDTLEEIVGVR  128 (431)
T ss_dssp             HHHHHHHHHHHHTTCSEEC---C-BTTSCSHHHHHHHHHHTTCCT-------------TCEEEECSSSCCTTHHHHTTSS
T ss_pred             hHHHHHHHHHHHhCCCccc---c-cceeeCHHHHHHHHHHHhCCC-------------CCEEEEeCCCCchhHHHHHhhc
Confidence            3667888899999997521   1 122347799999998776432             57899888 89988886653  


Q ss_pred             --------hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEec----CCCcccccCCHHHHHHHHHH--hhhccCCC
Q 018437          173 --------YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEETGWD  238 (356)
Q Consensus       173 --------~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~----~~~~tG~~~~i~~I~~i~~~--~~~~~~~~  238 (356)
                              ..|++++.+|.+++ +.+|+++|++++++++++|+++.    |++++|.+.|+++|.++|++  +      +
T Consensus       129 g~~~~~~~~~G~~~~~v~~~~~-~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~------~  201 (431)
T 3ht4_A          129 GKGVGSFKEYNIGYNAVPLTEG-GLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKP------D  201 (431)
T ss_dssp             SCSSSCSGGGTCEEEECCBCTT-SSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT------T
T ss_pred             ccccchHHHcCCEEEEeCCCCC-CCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCC------C
Confidence                    47999999999875 89999999999999999999996    55666667899999999999  9      9


Q ss_pred             CcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCC---CcCeeEEEEe
Q 018437          239 TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV---YAGVGWVVWR  291 (356)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~---P~g~g~l~~~  291 (356)
                      +++++|++|+.+..+    ..+..   .++|.++.++||++++   |.| |+++.+
T Consensus       202 ~~livDea~~~~~~~----~~~~~---~g~Di~~~S~sK~lgg~~~~~G-G~v~~~  249 (431)
T 3ht4_A          202 VVVFVDNCYGEFIEE----QEPCH---VGADLMAGSLIKNPGGGIVKTG-GYIVGK  249 (431)
T ss_dssp             CEEEEECTTCTTSSS----CCGGG---TTCSEEEEETTSGGGTTTCSSC-EEEEEC
T ss_pred             CEEEEeCCChhhccC----CCccc---cCCeEEEcCccccCCCCCCCce-EEEEec
Confidence            999999999876541    11122   2689999999999654   677 888775

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.73  E-value=4.9e-17  Score=151.96  Aligned_cols=180  Identities=16%  Similarity=0.090  Sum_probs=135.5

Q ss_pred             CChHHHHHHHHHHhcc-cCCCcccCcchHHHHHHHHHHHHHHhC---CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFN---TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ  142 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g---~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~  142 (356)
                      ++++.+.+++.+.+.. ....|.. ++..+    +++.+++++|   +++     ..+++|+|+++++..++.++     
T Consensus        32 ~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~----lr~~la~~~~~~~~~~-----~~v~~~~G~~~al~~~~~~~-----   96 (335)
T 1uu1_A           32 PFPEDLVDEVFRRLNSDALRIYYD-SPDEE----LIEKILSYLDTDFLSK-----NNVSVGNGADEIIYVMMLMF-----   96 (335)
T ss_dssp             CCCHHHHHHHHHTCCGGGGGSCCC-SSCHH----HHHHHHHHHTCSSCCG-----GGEEEESSHHHHHHHHHHHS-----
T ss_pred             CCCHHHHHHHHHHhhhhhhhcCCC-CchHH----HHHHHHHHcCCCCCCH-----HHEEEcCChHHHHHHHHHHh-----
Confidence            3467888988887732 2222222 23344    4555777777   654     35899999999999988765     


Q ss_pred             HHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHH
Q 018437          143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK  222 (356)
Q Consensus       143 ~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~  222 (356)
                                 +++|+++ ++|..+...++..|++++.+|++++ +.+|+++|     +++++|++++|+||||.+.|.+
T Consensus        97 -----------gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~  158 (335)
T 1uu1_A           97 -----------DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKD-LRIPEVNV-----GEGDVVFIPNPNNPTGHVFERE  158 (335)
T ss_dssp             -----------SEEEECS-SSCHHHHHHHHHHTCEEEECCCCTT-SCCCCCCC-----CTTEEEEEESSCTTTCCCCCHH
T ss_pred             -----------CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCCC-CCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHH
Confidence                       2689999 9999999999999999999998764 78898877     5788999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-ccCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       223 ~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ++.++++.+      + ++++|++|+.+..   .+  ... +...+.+.+..+++|+++ ....+|+++.+
T Consensus       159 ~l~~l~~~~------~-~li~De~~~~~~~---~~--~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~  217 (335)
T 1uu1_A          159 EIERILKTG------A-FVALDEAYYEFHG---ES--YVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS  217 (335)
T ss_dssp             HHHHHHHTT------C-EEEEECTTHHHHC---CC--CGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred             HHHHHHHhC------C-EEEEECcchhhcc---hh--HHHHhhhCCCEEEEecchhhcCCcccCeEEEEeC
Confidence            999999999      9 9999999986432   01  112 122345778889999975 33458999884

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.73  E-value=5.5e-17  Score=153.62  Aligned_cols=198  Identities=15%  Similarity=0.062  Sum_probs=130.9

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.+.........++.  ....++++++++++|++      ..+++|+||++|+..++.+++....  +  
T Consensus        45 ~~~~v~~a~~~~~~~~~~~~~~y~~--~~~~~l~~~la~~~g~~------~~v~~~~g~t~a~~~~~~~~~~~~~--~--  112 (375)
T 2eh6_A           45 AYPKLTEALKEQVEKLLHVSNLYEN--PWQEELAHKLVKHFWTE------GKVFFANSGTESVEAAIKLARKYWR--D--  112 (375)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCTTBCC--HHHHHHHHHHHHTSSSC------EEEEEESSHHHHHHHHHHHHHHHHH--H--
T ss_pred             CCHHHHHHHHHHHHhccccCcccCC--HHHHHHHHHHHhhcCCC------CeEEEeCchHHHHHHHHHHHHHHhc--c--
Confidence            4578888887776532111011221  12345677899999983      1389999999999999886532110  0  


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeE----EEEecCCccc----cCHHHHHHHHhhCceEEEEecCCCcccccC
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELK----EVKLEEGYYV----MNPVKAVELVDENTICVAAILGSTLTGEFE  219 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~----~v~~~~~~~~----~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~  219 (356)
                       +.+ ++++|+++.++|+.+...+..++....    ..|++.+ ..    +|+++|++++++++++|+++.++|+||.+.
T Consensus       113 -~~~-g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~  189 (375)
T 2eh6_A          113 -KGK-NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPG-FSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNE  189 (375)
T ss_dssp             -TTC-CCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSS-EEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEE
T ss_pred             -CCC-CCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCC-ceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcC
Confidence             000 126899999886655444433332210    0111111 11    589999999988899999999999999997


Q ss_pred             C----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCC--CceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          220 D----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP--LVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       220 ~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~--~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      |    +++|.++|+++      ++++|+|++|+++..  . +. .+.+...  ..|.+++|  |++++|.++|++++++
T Consensus       190 ~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~-~~-~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~  256 (375)
T 2eh6_A          190 ASEDFLSKLQEICKEK------DVLLIIDEVQTGIGR--T-GE-FYAYQHFNLKPDVIALA--KGLGGGVPIGAILARE  256 (375)
T ss_dssp             CCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--T-SS-SSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEH
T ss_pred             CCHHHHHHHHHHHHHh------CCEEEEeccccCCCC--C-Cc-chhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcH
Confidence            7    99999999999      999999999986322  1 11 1122211  37888776  8877888999999875

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.73  E-value=1.4e-16  Score=152.02  Aligned_cols=197  Identities=10%  Similarity=-0.041  Sum_probs=132.6

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.........++  .....++++++++++|.+       .+++|+||++|+..++.+++.+...   .
T Consensus        53 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~g~~-------~v~~~~~gt~a~~~al~~~~~~~~~---~  120 (392)
T 3ruy_A           53 RHPKIINALIDQANRVTLTSRAFH--SDQLGPWYEKVAKLTNKE-------MVLPMNTGAEAVETAIKTARRWAYD---V  120 (392)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTSE--ETTHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH---T
T ss_pred             CCHHHHHHHHHHHHhccccccccC--CHHHHHHHHHHHHhcCCC-------EEEEeCcHHHHHHHHHHHHHHhhhh---c
Confidence            357888888887764332222122  233456777899999843       3899999999999999987654211   1


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCe-------------eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVE-------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~-------------v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      .|.+.++++|++..++|+.+...+..++..             +..++.      .|+++|++++++++++|++++++||
T Consensus       121 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~~~~np  194 (392)
T 3ruy_A          121 KKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY------GDLEALKAAITPNTAAFILEPIQGE  194 (392)
T ss_dssp             SCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT------TCHHHHHHHCCTTEEEEEECSSBST
T ss_pred             cCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc------ccHHHHHHHhccCeEEEEEeCccCC
Confidence            222223568999888886654444333211             222221      1899999999989999999999999


Q ss_pred             ccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-cCeeEEE
Q 018437          215 TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWVV  289 (356)
Q Consensus       215 tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~  289 (356)
                      +|.+.|    +++|.++|++|      |+++|+|++|.++...  ......+......|.+++|  |.+.+. ...|+++
T Consensus       195 tG~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~--g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~  264 (392)
T 3ruy_A          195 AGINIPPAGFLKEALEVCKKE------NVLFVADEIQTGLGRT--GKVFACDWDNVTPDMYILG--KALGGGVFPISCAA  264 (392)
T ss_dssp             TTSBCCCTTHHHHHHHHHHTT------TCEEEEECTTTTTTTT--SSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEE
T ss_pred             CCCccCCHHHHHHHHHHHHHc------CCEEEEeechhCCCcc--ccchhhhccCCCCCEEEEc--hhhhCChhhhEEEE
Confidence            999988    99999999999      9999999999754321  1111112212246777775  986543 5589988


Q ss_pred             EeC
Q 018437          290 WRT  292 (356)
Q Consensus       290 ~~~  292 (356)
                      .++
T Consensus       265 ~~~  267 (392)
T 3ruy_A          265 ANR  267 (392)
T ss_dssp             ECH
T ss_pred             ECH
Confidence            754

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.73  E-value=3.1e-17  Score=154.45  Aligned_cols=184  Identities=14%  Similarity=0.056  Sum_probs=129.0

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+..+.  +...+.    ..++++++++++|.+.       .++++||++|+..++.++..+        
T Consensus        28 ~p~v~~ai~~~~~~~~--~~~~~~----~~~l~~~la~~~~~~~-------~i~~~~g~~a~~~a~~~~~~~--------   86 (359)
T 3pj0_A           28 LTEALQNIDDNLESDI--YGNGAV----IEDFETKIAKILGKQS-------AVFFPSGTMAQQIALRIWADR--------   86 (359)
T ss_dssp             HHHHTTTSCTTCBCCB--TTBSHH----HHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHHHH--------
T ss_pred             CHHHHHHHHhhcccCc--ccCCHH----HHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHHhc--------
Confidence            4666666655433221  222233    3456667899999874       477799999999999888764        


Q ss_pred             CCCCCCC--eEEecCCCcchHHH---HHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcc-cccCCHH
Q 018437          149 GKPYDKP--NIVTGANVQVCWEK---FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-GEFEDVK  222 (356)
Q Consensus       149 g~~~~~~--~vi~s~~~h~s~~~---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t-G~~~~i~  222 (356)
                           ++  .|+++.+.|++...   .+...|++++.+|.+  ++.+|+++|+++ .+++++|+++.|+|++ |.+.|.+
T Consensus        87 -----g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~  158 (359)
T 3pj0_A           87 -----KENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA--NQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFE  158 (359)
T ss_dssp             -----HTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT--TSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHH
T ss_pred             -----CCCcEEEEeccceeeehhcchHHHhcCceEEecCCc--CCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHH
Confidence                 23  36677777765532   224568898888873  489999999998 7789999999999998 6886655


Q ss_pred             H---HHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          223 L---LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       223 ~---I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      +   |.++|+++      ++++|+|++|..+...+... ....+. .++|.+++++||++++|.| |+++.
T Consensus       159 ~l~~l~~~~~~~------~~~li~D~a~~~~~~~~~~~-~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~  220 (359)
T 3pj0_A          159 ELEKISEYCHEQ------GISLHLDGARLWEITPFYQK-SAEEIC-ALFDSVYVSFYKGIGGIAG-AILAG  220 (359)
T ss_dssp             HHHHHHHHHHHH------TCEEEEEETTCGGGHHHHTC-CHHHHH-TTCSEEEEESSSTTCCSSC-EEEEE
T ss_pred             HHHHHHHHHHHc------CCEEEEECcchhcchhhhCC-CHHHhh-ccCCEEEEeccccCCCcce-EEEEC
Confidence            5   59999999      99999999986543321111 111221 4679999999999888866 66654

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.73  E-value=8.4e-17  Score=153.80  Aligned_cols=193  Identities=11%  Similarity=-0.072  Sum_probs=133.9

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.........+  ......++++.+++++|.+       .+++|+||++|+..++.+++.....    
T Consensus        57 ~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~gg~~a~~~al~~~~~~~~~----  123 (397)
T 2ord_A           57 SHPRLVEAIKDQAEKLIHCSNLF--WNRPQMELAELLSKNTFGG-------KVFFANTGTEANEAAIKIARKYGKK----  123 (397)
T ss_dssp             TCHHHHHHHHHHHHHCSCCCTTS--EEHHHHHHHHHHHHTTTSC-------EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhcccCcccc--CCHHHHHHHHHHHHhcCCC-------eEEEeCCHHHHHHHHHHHHHHHhhc----
Confidence            35778888887775422111112  2345567788899998853       3899999999999999887642110    


Q ss_pred             cCCCCCCCeEEecCCCc-chHHHHHHhhCCe------------eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          148 QGKPYDKPNIVTGANVQ-VCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h-~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                       +. .++++|+++++++ .++..+++..|.+            ++.+|.      .|+++|++++++++++|+++.++||
T Consensus       124 -~~-~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~~~~np  195 (397)
T 2ord_A          124 -KS-EKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF------NNVEDLRRKMSEDVCAVFLEPIQGE  195 (397)
T ss_dssp             -HC-TTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT------TCHHHHHHHCCTTEEEEEECSEECT
T ss_pred             -CC-CCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC------CCHHHHHHHhhcCeEEEEEecccCC
Confidence             00 0134677766554 5566577777765            555553      2899999999888999999999999


Q ss_pred             ccc----cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEcCCcCCCCCcCeeEE
Q 018437          215 TGE----FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       215 tG~----~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      ||.    .+++++|.++|+++      |+++++|++|+++..  . .. ...+.  ....|.+++  +|+++++.++|++
T Consensus       196 tG~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~-g~-~~~~~~~~~~~d~~s~--sK~~~~G~r~G~~  263 (397)
T 2ord_A          196 SGIVPATKEFLEEARKLCDEY------DALLVFDEVQCGMGR--T-GK-LFAYQKYGVVPDVLTT--AKGLGGGVPIGAV  263 (397)
T ss_dssp             TTCEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--T-SS-SSHHHHHTCCCSEEEE--CGGGGTTSCCEEE
T ss_pred             CCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCcc--C-cc-chhhhhhCCCCCeeee--ccccCCCcCeEEE
Confidence            999    37899999999999      999999999986322  1 11 11111  113676654  7998877789999


Q ss_pred             EEeCC
Q 018437          289 VWRTK  293 (356)
Q Consensus       289 ~~~~~  293 (356)
                      +.+++
T Consensus       264 ~~~~~  268 (397)
T 2ord_A          264 IVNER  268 (397)
T ss_dssp             EECST
T ss_pred             EEchH
Confidence            98654

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.72  E-value=1.8e-16  Score=152.56  Aligned_cols=229  Identities=13%  Similarity=-0.013  Sum_probs=155.4

Q ss_pred             HHHHHHHHhhhcCCCCcccccccC------CCChHHHHHHHHHHh-cc-cCCCcccCcchHHHHHHHHHHHHHHhCCCCC
Q 018437           42 AYQVINDELMLDGNPRLNLASFVT------TWMEPECDKLVMASI-NK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVA  113 (356)
Q Consensus        42 i~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~v~~~i~~~~-~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~  113 (356)
                      ++..............+||+.+.+      .++++.+.++.. .+ +. ....|....|..++++++.+|+.+..+...+
T Consensus        16 i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~   94 (405)
T 3k7y_A           16 ILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIE   94 (405)
T ss_dssp             HHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTT
T ss_pred             HHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCcccc
Confidence            444444332222233357776642      123467777765 43 22 3345666778899999998888655443321


Q ss_pred             CCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEe-cCCccccCH
Q 018437          114 DDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNP  192 (356)
Q Consensus       114 ~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~  192 (356)
                      + +...+++|+||++|+.+++.++.+-           .. ++|++++|+|..+...++..|++++.+|+ +++++.+|+
T Consensus        95 ~-~~i~i~~t~G~~~al~~~~~~l~~~-----------~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~  161 (405)
T 3k7y_A           95 D-KKICTIQCIGGTGAIFVLLEFLKML-----------NV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINY  161 (405)
T ss_dssp             T-TCEEEEEEEHHHHHHHHHHHHHHTT-----------TC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECH
T ss_pred             c-cceEEEEcCchHHHHHHHHHHHHhc-----------CC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCH
Confidence            1 1113589999999999998877541           12 78999999999999999999999999998 454589999


Q ss_pred             HHHHHHHhh--CceEEEEecC-CCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cc-ccc
Q 018437          193 VKAVELVDE--NTICVAAILG-STLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EW-DFR  264 (356)
Q Consensus       193 ~~L~~~i~~--~~~~v~~~~~-~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~-~~~  264 (356)
                      ++|++++++  ++++++++.+ +||||.+-   .+++|.++|+++      ++++++|++|..+...-..... .. .+.
T Consensus       162 ~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~------~~~vi~De~Y~~l~~~~~~~~~~~~~~~~  235 (405)
T 3k7y_A          162 DLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHK------KHVIIFDIAYQGFGHTNLEEDVLLIRKFE  235 (405)
T ss_dssp             HHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH------CCEEEEEESCTTTSSSSTTGGGHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CeEEEEecCcccccCCCcccchHHHHHHH
Confidence            999999975  4577888776 89999984   467788999999      9999999999875431000000 00 111


Q ss_pred             CCCce-EEEEcCCcCCC-CCcCeeEEEE
Q 018437          265 LPLVK-SINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       265 ~~~~D-s~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      ..+-. .+.-|+.|.++ ....+|++++
T Consensus       236 ~~~~~~i~~~S~SK~~~l~GlRiG~~~~  263 (405)
T 3k7y_A          236 EKNIAFSVCQSFSKNMSLYGERAGALHI  263 (405)
T ss_dssp             TTTCCEEEEEECTTTSCCTTTTEEEEEE
T ss_pred             hcCCcEEEEeeCCccCCCccccceEEEE
Confidence            11122 33456899875 6789999864

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.72  E-value=2.9e-17  Score=154.56  Aligned_cols=162  Identities=14%  Similarity=0.042  Sum_probs=119.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH---HHHhhC
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK---FARYFE  175 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~---~~~~~G  175 (356)
                      ++++++++++|.+.       .++++||++|+..++.++..+.           +++.|+++.+.|++...   .+...|
T Consensus        51 ~l~~~la~~~~~~~-------~i~~~~G~~a~~~al~~~~~~g-----------d~~~vi~~~~~~~~~~~~~~~~~~~g  112 (357)
T 3lws_A           51 PFEQKFADVLGMDD-------AVFFPSGTMAQQVALRIWSDET-----------DNRTVAYHPLCHLEIHEQDGLKELHP  112 (357)
T ss_dssp             HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHHHHH-----------TCCEEEECTTCHHHHSSTTHHHHHSS
T ss_pred             HHHHHHHHHhCCCc-------EEEecCcHHHHHHHHHHHhhcC-----------CCcEEEecccceeeeeccchhhhccC
Confidence            44456888889864       5777899999999998877641           01278888888877544   345568


Q ss_pred             CeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcc-cccCC---HHHHHHHHHHhhhccCCCCcEEEeccccccc
Q 018437          176 VELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (356)
Q Consensus       176 ~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t-G~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~  251 (356)
                      ++++.+|.+  ++.+|+++|+++.  ++++|+++.|+||+ |.+.+   +++|.++|+++      |+++|+|++|....
T Consensus       113 ~~~~~v~~~--~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~------~~~li~D~a~~~~~  182 (357)
T 3lws_A          113 IETILVGAA--DRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRER------GIRLHLDGARLFEM  182 (357)
T ss_dssp             CEEEECSCT--TSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHT------TCEEEEEETTHHHH
T ss_pred             cEEEEecCC--CCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHc------CCEEEEECchhhhh
Confidence            888777743  4789999999984  38899999999998 88754   89999999999      99999999986322


Q ss_pred             ccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEe
Q 018437          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      ..+... ....+. ..+|.++.++||++.+|.| |+++.+
T Consensus       183 ~~~~~~-~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~  219 (357)
T 3lws_A          183 LPYYEK-TAAEIA-GLFDSIYISFYKGLGGIAG-AILAGP  219 (357)
T ss_dssp             HHHHTC-CHHHHH-TTSSEEEEESSSTTCCSSC-EEEEEC
T ss_pred             hhhcCC-ChHHHH-hcCCEEEEeccccCCCCce-EEEEcC
Confidence            221111 111121 3578889999999888888 877653

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.71  E-value=3.3e-17  Score=157.48  Aligned_cols=154  Identities=13%  Similarity=-0.015  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH-----H
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA-----R  172 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~-----~  172 (356)
                      .++.+.+++++|.+.       .+++++|++|+.. +.++.+             .+++|+++.+.|......+     .
T Consensus        70 ~~l~~~la~l~g~~~-------~~~~~sG~~Ai~~-~~~l~~-------------~gd~Vi~~~~~y~~~~~~~~~~~~~  128 (400)
T 3nmy_A           70 FAYERCVAALEGGTR-------AFAFASGMAATST-VMELLD-------------AGSHVVAMDDLYGGTFRLFERVRRR  128 (400)
T ss_dssp             HHHHHHHHHHHTCSE-------EEEESSHHHHHHH-HHTTSC-------------TTCEEEEESSCCHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHhCCCC-------EEEecCHHHHHHH-HHHHcC-------------CCCEEEEeCCCchHHHHHHHHhhHh
Confidence            345556889998763       6778888999876 333322             1578999999998554443     3


Q ss_pred             hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc
Q 018437          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~  252 (356)
                      ..|++++.++.+      |+++|++++++++++|++..++||+|.+.|+++|.++|+++      |+++++|++|+.+..
T Consensus       129 ~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~------g~~livDe~~~~~~~  196 (400)
T 3nmy_A          129 TAGLDFSFVDLT------DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKH------GLLTVVDNTFASPML  196 (400)
T ss_dssp             HHCCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTHHHH
T ss_pred             hcCeEEEEECCC------CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHc------CCEEEEECCCccccc
Confidence            358988888764      78999999999999999999999999999999999999999      999999999986443


Q ss_pred             cccCCCCcccccCCCceEEEEcCCcCCCCCc-C-ee-EEEEeC
Q 018437          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-G-VG-WVVWRT  292 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g-~g-~l~~~~  292 (356)
                        ..   +..   .++|.++.|.+|++++|. . .| +++.++
T Consensus       197 --~~---~~~---~g~div~~S~sK~l~g~g~~~gG~~vv~~~  231 (400)
T 3nmy_A          197 --QR---PLS---LGADLVVHSATKYLNGHSDMVGGIAVVGDN  231 (400)
T ss_dssp             --CC---GGG---GTCSEEEEETTTTTTCSSSCCCEEEEECSC
T ss_pred             --CC---hhh---cCCcEEEecCccccCCCCCcceeEEEEeCC
Confidence              11   122   278999999999998773 2 35 444444

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.71  E-value=4e-16  Score=149.37  Aligned_cols=217  Identities=13%  Similarity=0.040  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHhhhc-CCCCcccccccCC-CChHHHHHHHHHHhccc-----CCCcccCcchHHHHHHHHHHHHHH--hC
Q 018437           39 KEAAYQVINDELMLD-GNPRLNLASFVTT-WMEPECDKLVMASINKN-----YVDMDEYPVTTELQNRCVNMIAHL--FN  109 (356)
Q Consensus        39 ~~~i~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~v~~~i~~~~~~~-----~~~~~~~~~~~~le~~~~~~la~l--~g  109 (356)
                      .+++.+........+ +...++|..+.++ ++++.+.+++.+.+...     ...|....+..+++++    ++++  .|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~----la~~l~~g   91 (400)
T 3asa_A           16 FADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQK----LSEDFYRG   91 (400)
T ss_dssp             HHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHH----HHHTTSTT
T ss_pred             HHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHH----HHHHHHcC
Confidence            455555555443333 2333455555443 34577888887766431     1223333455566655    5555  47


Q ss_pred             -CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe-eEEEEecCC-
Q 018437          110 -TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-LKEVKLEEG-  186 (356)
Q Consensus       110 -~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~-v~~v~~~~~-  186 (356)
                       +++     ..+++|+|+++++..++..+ .             .+++|+++.++|..+...++..|++ ++.+|++++ 
T Consensus        92 ~~~~-----~~v~~~~G~~~al~~~~~~~-~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~  152 (400)
T 3asa_A           92 FVDA-----KEIFISDGAKVDLFRLLSFF-G-------------PNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQEN  152 (400)
T ss_dssp             SSCG-----GGEEEESCHHHHHHHHHHHH-C-------------SSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGG
T ss_pred             CCCH-----HHEEEccChHHHHHHHHHHc-C-------------CCCEEEECCCCcHHHHHHHHHcCCcceEecccchhc
Confidence             443     35899999999988754322 1             1468999999999999999999999 999998742 


Q ss_pred             ccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccc
Q 018437          187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF  263 (356)
Q Consensus       187 ~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~  263 (356)
                      .+..|++   + + +++++|++++|+||||.+.|   +++|.++|+++      ++++++|++|+.+...   +.....+
T Consensus       153 ~~~~~l~---~-~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~  218 (400)
T 3asa_A          153 AFFPEFP---E-D-THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH------EILILFDAAYSTFISD---PSLPKSI  218 (400)
T ss_dssp             TTCCCCC---T-T-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGCCC---TTSCSSG
T ss_pred             CcccChh---h-c-cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEchhhhhhcC---CCCCCch
Confidence            2344432   2 1 56889999999999999976   56788999999      9999999999865431   1111222


Q ss_pred             c-CC---CceEEEEcCCcCCC-CCcCeeEEEEeC
Q 018437          264 R-LP---LVKSINVSGHKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       264 ~-~~---~~Ds~~~~~hK~l~-~P~g~g~l~~~~  292 (356)
                      . ..   ..+.+..+++|+++ ....+|+++.++
T Consensus       219 ~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~  252 (400)
T 3asa_A          219 FEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQ  252 (400)
T ss_dssp             GGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCT
T ss_pred             hhCCCCCCceEEEecchhhcCCcchheeEEeeCh
Confidence            1 22   23477788999875 334589998754

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.71  E-value=5.5e-17  Score=155.51  Aligned_cols=158  Identities=19%  Similarity=0.061  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHH
Q 018437           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FAR  172 (356)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~----~~~  172 (356)
                      .+++++.+++++|.+.       .+++++|++|+..++. +.++             +++|+++.++|.+...    .++
T Consensus        57 ~~~lr~~la~~~g~~~-------~i~~~sGt~a~~~al~-~~~~-------------gd~Vi~~~~~y~~~~~~~~~~~~  115 (393)
T 1n8p_A           57 RENLERAVAALENAQY-------GLAFSSGSATTATILQ-SLPQ-------------GSHAVSIGDVYGGTHRYFTKVAN  115 (393)
T ss_dssp             HHHHHHHHHHHTTCSE-------EEEESCHHHHHHHHHH-TSCS-------------SCEEEEESSCCHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHhCCCc-------EEEECChHHHHHHHHH-HcCC-------------CCEEEEeCCCchHHHHHHHHHHH
Confidence            4467777999999863       5667777999999988 5321             4789999999985444    455


Q ss_pred             hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc
Q 018437          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~  252 (356)
                      ..|++++.+|++      | ++|++++++++++|++++++||+|.+.|+++|.++|++++.  +.++++|+|++|+.+..
T Consensus       116 ~~G~~v~~v~~~------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~--~~~~~livD~a~~~~~~  186 (393)
T 1n8p_A          116 AHGVETSFTNDL------L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAA--GQDVILVVDNTFLSPYI  186 (393)
T ss_dssp             TTCSCCEEESSH------H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTT--TTTCEEEEECTTTHHHH
T ss_pred             HcCcEEEEeCCC------h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCC--CCCCEEEEeCCcccccc
Confidence            679999998875      6 89999999899999999999999999999999999999821  11699999999987654


Q ss_pred             cccCCCCcccccCCCceEEEEcCCcCCCCCcC--e-eEEEEeCC
Q 018437          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--V-GWVVWRTK  293 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~-g~l~~~~~  293 (356)
                      .    + ...   .++|.++.++||+++ |.|  . |+++.+++
T Consensus       187 ~----~-~~~---~~~di~~~S~sK~~g-~~G~rigG~~~~~~~  221 (393)
T 1n8p_A          187 S----N-PLN---FGADIVVHSATKYIN-GHSDVVLGVLATNNK  221 (393)
T ss_dssp             C----C-GGG---GTCSEEEEETTTTTT-CSSCCCCEEEEESCH
T ss_pred             C----C-HHH---cCCeEEEEECccccc-CCCCceeEEEEeCCH
Confidence            1    1 122   268999999999874 555  5 88877543

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.69  E-value=6.3e-16  Score=147.88  Aligned_cols=193  Identities=14%  Similarity=-0.012  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+.........++  .....++++++++++|.+.       +++|+||++|+..++.+++..+...    
T Consensus        57 ~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~-------v~~~~gg~~a~~~al~~~~~~~~~~----  123 (406)
T 4adb_A           57 HPELREALNEQASKFWHTGNGYT--NEPVLRLAKKLIDATFADR-------VFFCNSGAEANEAALKLARKFAHDR----  123 (406)
T ss_dssp             CHHHHHHHHHHHTTCSCCCTTSC--CHHHHHHHHHHHHHSSCSE-------EEEESSHHHHHHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHhcccccCCcC--CHHHHHHHHHHHhhCCCCe-------EEEeCcHHHHHHHHHHHHHHHHHhc----
Confidence            57888888887765322222222  2345678888999998753       8999999999999999886532211    


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCC-------------eeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEV-------------ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~-------------~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      |. .++++|++++++|+.+...+..++.             ++..+|.      .|+++|++++++++++|+++ |+|++
T Consensus       124 ~~-~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~-p~np~  195 (406)
T 4adb_A          124 YG-SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY------NDINSASALIDDSTCAVIVE-PIQGE  195 (406)
T ss_dssp             TC-TTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT------TCHHHHHTTCSTTEEEEEEC-SEETT
T ss_pred             CC-CCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC------CcHHHHHHHhcCCeEEEEEe-CCcCC
Confidence            10 1136788877777665444443333             2222221      48999999999889998888 99999


Q ss_pred             ccc-----CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          216 GEF-----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       216 G~~-----~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      |.+     +++++|.++|++|      |+++|+|++|+++..  .......+......|.+++  +|+++++..+|+++.
T Consensus       196 g~~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~~~  265 (406)
T 4adb_A          196 GGVVPASNAFLQGLRELCNRH------NALLIFDEVQTGVGR--TGELYAYMHYGVTPDLLTT--AKALGGGFPVGALLA  265 (406)
T ss_dssp             TTSEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEE
T ss_pred             CCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--cchhHHHHhcCCCCCEEEe--chhhcCCCCeEEEEE
Confidence            965     4799999999999      999999999986432  1111111111224577754  999875566999877


Q ss_pred             eC
Q 018437          291 RT  292 (356)
Q Consensus       291 ~~  292 (356)
                      ++
T Consensus       266 ~~  267 (406)
T 4adb_A          266 TE  267 (406)
T ss_dssp             CH
T ss_pred             cH
Confidence            54

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.69  E-value=6.7e-16  Score=144.94  Aligned_cols=192  Identities=15%  Similarity=0.008  Sum_probs=140.1

Q ss_pred             CCcccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           56 PRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        56 ~~~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      ..++|....+. ++++.+.+++.+.+... ..|..... .    ++++++++++|+++     ..+++|+|+++++..++
T Consensus        16 ~~id~~~~~~~~~~~~~v~~a~~~~~~~~-~~y~~~~~-~----~lr~~la~~~~~~~-----~~i~~t~g~~~al~~~~   84 (350)
T 3fkd_A           16 EIVNFSTTVWTDGDKDHLEKHLVENLNCI-RHYPEPDA-G----TLRQMLAKRNSVDN-----NAILVTNGPTAAFYQIA   84 (350)
T ss_dssp             CCEECSCCSCCCSCCHHHHHHHHHTGGGG-GSCCCTTC-H----HHHHHHHHHTTCCG-----GGEEEESHHHHHHHHHH
T ss_pred             cEEEccCCCCCCCCCHHHHHHHHHhHhHH-hcCCCCcH-H----HHHHHHHHHhCcCH-----HHEEEcCCHHHHHHHHH
Confidence            33344444333 34578888888777432 22222222 2    56677899999875     34899999999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEe-cCCccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      .++.               +++|+++.++|..+...++..|++++.+|+ ++. ..+++        +++++|++++|+|
T Consensus        85 ~~l~---------------gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~--------~~~~~v~i~~p~n  140 (350)
T 3fkd_A           85 QAFR---------------GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI-GEADF--------SNMDFCWLCNPNN  140 (350)
T ss_dssp             HHTT---------------TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCG-GGSCC--------TTCSEEEEESSCT
T ss_pred             HHHC---------------CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcc-ccCcc--------CCCCEEEEeCCCC
Confidence            8763               378999999999999999999999999999 652 34444        5788999999999


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCC-CcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWD-TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~-~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      |||.+.|+++|.++++.+      + .++++|++|+.+...  .......+.....+.+..|++|+++ .+.++|+++.
T Consensus       141 ptG~~~~~~~l~~l~~~~------~~~~li~Dea~~~~~~~--~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~  211 (350)
T 3fkd_A          141 PDGRLLQRTEILRLLNDH------PDTTFVLDQSYVSFTTE--EVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVA  211 (350)
T ss_dssp             TTCCCCCHHHHHHHHHHC------TTSEEEEECTTTTSCSS--CCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEEC
T ss_pred             CcCCCCCHHHHHHHHHhC------CCCEEEEECchhhhccC--cchhhHHhhcCCCEEEEecCchhccCcchheEeEEe
Confidence            999999999999999998      4 699999999865431  1111122223345677788999875 4567899887

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.68  E-value=5.4e-16  Score=151.34  Aligned_cols=199  Identities=13%  Similarity=0.088  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcC
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (356)
                      +.+.+++.+.+......|...++..++    ++++++++|.+.       +++|+|||+|+..++.+++++....   .|
T Consensus        53 ~~v~~a~~~~l~~~~~~y~~~~~~~~l----~~~la~~~~~~~-------v~~t~~gt~A~~~al~~~~~~~~~~---~G  118 (467)
T 2oqx_A           53 GAVTQSMQAAMMRGDEAYSGSRSYYAL----AESVKNIFGYQY-------TIPTHQGRGAEQIYIPVLIKKREQE---KG  118 (467)
T ss_dssp             SCCCHHHHHHTTSCCCCSSSCHHHHHH----HHHHHHHHCCSE-------EEEEC--CCSHHHHHHHHHHHHHHH---HC
T ss_pred             HHHHHHHHHHhccCcceeccCchhHHH----HHHHHHHhCcCc-------EEEcCCcHHHHHHHHHHHhcccccc---CC
Confidence            566777777765433334444444444    556888888753       8999999999999999987641110   12


Q ss_pred             CCCCCCeEEecCCCcch-HHHHHHhhCCeeEEE------Eec---CCccccCHHHHHHHHhh----CceEEEEecCCCcc
Q 018437          150 KPYDKPNIVTGANVQVC-WEKFARYFEVELKEV------KLE---EGYYVMNPVKAVELVDE----NTICVAAILGSTLT  215 (356)
Q Consensus       150 ~~~~~~~vi~s~~~h~s-~~~~~~~~G~~v~~v------~~~---~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~t  215 (356)
                      .+ ++++|+++ ..|+. +.......|+.+...      +.+   +.++.+|+++|++++++    ++++|+++.++|++
T Consensus       119 ~~-~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~  196 (467)
T 2oqx_A          119 LD-RSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSA  196 (467)
T ss_dssp             CC-TTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGG
T ss_pred             CC-ccceEEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCC
Confidence            10 00557766 56744 444445556655443      222   12478999999999984    78999999999998


Q ss_pred             -ccc---CCHHHHHHHHHHhhhccCCCCcEEEeccccc-ccc-------cccCCCCccccc---CCCceEEEEcCCcCCC
Q 018437          216 -GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGG-FIA-------PFLYPDLEWDFR---LPLVKSINVSGHKYGL  280 (356)
Q Consensus       216 -G~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~-~~~-------~~~~~~~~~~~~---~~~~Ds~~~~~hK~l~  280 (356)
                       |.+   +++++|.++|++|      |+++|+|++++. ...       .+ .+.....+.   ...+|.+++++||+++
T Consensus       197 gG~~~~~~~l~~i~~la~~~------gi~li~D~a~~~e~~~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~~s~sK~~g  269 (467)
T 2oqx_A          197 GGQPVSLANLKAMYSIAKKY------DIPVVMDSARFAENAYFIKQREAEY-KDWTIEQITRETYKYADMLAMSAKKDAM  269 (467)
T ss_dssp             GCBCCCHHHHHHHHHHHHHT------TCCEEEECTTHHHHHHHHHHHCGGG-TTSCHHHHHHHHGGGCSEEEEESSSTTC
T ss_pred             CCccCCHHHHHHHHHHHHHc------CCEEEEEchhhhhhhhhcccccccc-cCccHHHHhhhhhccCCeEEEecccccC
Confidence             665   5688999999999      999999988754 221       11 111111111   1347888999999997


Q ss_pred             CCcCeeEEEEeC
Q 018437          281 VYAGVGWVVWRT  292 (356)
Q Consensus       281 ~P~g~g~l~~~~  292 (356)
                      .|.| |+++.++
T Consensus       270 ~~~G-g~~~~~~  280 (467)
T 2oqx_A          270 VPMG-GLLCMKD  280 (467)
T ss_dssp             CSSC-EEEEECS
T ss_pred             CCCc-eEEEecC
Confidence            7755 6666544

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.68  E-value=2.5e-16  Score=151.17  Aligned_cols=234  Identities=15%  Similarity=0.032  Sum_probs=147.3

Q ss_pred             HHHHHHHHHhhhcCCCCcccccccC-CC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCC
Q 018437           41 AAYQVINDELMLDGNPRLNLASFVT-TW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA  118 (356)
Q Consensus        41 ~i~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~  118 (356)
                      .++..............++|+.+.+ .. .++.+.+++.++.......|....+..++++++.+++   .|.+.......
T Consensus        27 ~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~---~~~~~~~~~~~  103 (409)
T 4eu1_A           27 PILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLC---FGPTCAALRDG  103 (409)
T ss_dssp             CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHH---HCSSCHHHHTT
T ss_pred             hHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHH---cCCCchhhccC
Confidence            3554444332222223356666554 32 2344566666554333344555567777887766665   35541000001


Q ss_pred             Ce--EEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec-CCccccCHHHH
Q 018437          119 VG--VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKA  195 (356)
Q Consensus       119 ~~--~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L  195 (356)
                      .+  ..|.||++++..+...++.-          ...+++|+++.++|..+...++..|++++.+|++ ++++.+|+++|
T Consensus       104 ~i~~~~~~~g~ga~~~~~~~~~~~----------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l  173 (409)
T 4eu1_A          104 RIASCQTLGGTGALRIGGDLLNRF----------VANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGM  173 (409)
T ss_dssp             CEEEEEESHHHHHHHHHHHHGGGT----------SSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHH
T ss_pred             ceeeeecccchHHHHHHHHHHHHh----------cCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHH
Confidence            23  45899999988765544321          1124799999999999999999999999999983 34589999999


Q ss_pred             HHHHhh---CceEEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccC-CCCc-ccccCCC
Q 018437          196 VELVDE---NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLE-WDFRLPL  267 (356)
Q Consensus       196 ~~~i~~---~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~-~~~~~~~  267 (356)
                      ++++++   +++++++++|+||||.+.+   +++|.++|+++      ++++++|++|+++...-.. +... ..+....
T Consensus       174 ~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~  247 (409)
T 4eu1_A          174 LECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRR------NHIPFVDMAYQGFATGQLDYDAFVPRHLVDMV  247 (409)
T ss_dssp             HHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTTTSCHHHHTHHHHHHHTTS
T ss_pred             HHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhC------CcEEEEeccccccccCCcccchHHHHHHHhhC
Confidence            999963   4567777999999999966   55599999999      9999999999876531000 0000 0111112


Q ss_pred             ce-EEEEcCCcCCC-CCcCeeEE--EEeCC
Q 018437          268 VK-SINVSGHKYGL-VYAGVGWV--VWRTK  293 (356)
Q Consensus       268 ~D-s~~~~~hK~l~-~P~g~g~l--~~~~~  293 (356)
                      .+ .+..+..|.++ ....+|++  ++.++
T Consensus       248 ~~~i~~~S~SK~~g~~G~riG~~~~v~~~~  277 (409)
T 4eu1_A          248 PNLIVAQSFSKNFGLYGHRCGALHISTASA  277 (409)
T ss_dssp             SCCEEEEECTTTSSCGGGCCEEEEEECSSH
T ss_pred             CcEEEEecCcccccCccCCceEEEEEeCCH
Confidence            23 34456889875 34567887  55543

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.67  E-value=8.9e-16  Score=148.16  Aligned_cols=212  Identities=15%  Similarity=0.033  Sum_probs=139.5

Q ss_pred             CcccccccCC----CChHHHHHHHHHHh-c-c--cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhH
Q 018437           57 RLNLASFVTT----WMEPECDKLVMASI-N-K--NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (356)
Q Consensus        57 ~~~l~~~~~~----~~~~~v~~~i~~~~-~-~--~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (356)
                      .++|+.+.+.    ++++.+.+++.+.+ . .  ....|....+..++++.    +++++|+++     ..+++|+|+++
T Consensus        34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~----ia~~~~~~~-----~~i~~t~G~~~  104 (422)
T 3d6k_A           34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIREL----WAEALGLPA-----DLVVAQDGSSL  104 (422)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHH----HHHHHTCCG-----GGEEECSSCHH
T ss_pred             eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHH----HHHHhCCCh-----hHEEEecchHH
Confidence            4566666554    22235555554332 1 1  12234444455566555    666668875     34899999999


Q ss_pred             HH--HHHHHHHHHHHHHHHHhcCCCC----CCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-
Q 018437          129 AI--MLAGLAFKRKWQQKRKEQGKPY----DKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-  201 (356)
Q Consensus       129 a~--~~al~~~~~~~~~~~~~~g~~~----~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-  201 (356)
                      ++  .+++.++...+     ..|...    ++++|+++.++|..+...++..|++++.+|++++ + +|+++|++++++ 
T Consensus       105 al~l~~~~~~l~~~~-----~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l~~~  177 (422)
T 3d6k_A          105 NIMFDLISWSYTWGN-----NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE-G-PDMGVVRELVKDP  177 (422)
T ss_dssp             HHHHHHHHHHHHHCC-----TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT-E-ECHHHHHHHHTST
T ss_pred             HHHHHHHHHHhcCcc-----cccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC-C-CCHHHHHHHHhcC
Confidence            97  34444443200     000000    1247999999999999999999999999999874 4 999999999985 


Q ss_pred             CceEEE-EecCCCcccccCCHH---HHHHHHH-HhhhccCCCCcEEEeccccc--ccccccCCCCcc-cc----cCCCce
Q 018437          202 NTICVA-AILGSTLTGEFEDVK---LLHDLLT-KKNEETGWDTPIHVDAASGG--FIAPFLYPDLEW-DF----RLPLVK  269 (356)
Q Consensus       202 ~~~~v~-~~~~~~~tG~~~~i~---~I~~i~~-~~~~~~~~~~~l~vD~a~~~--~~~~~~~~~~~~-~~----~~~~~D  269 (356)
                      ++++|+ +++++||||.+.+.+   +|.++|+ ++      ++++|+|++|+.  +... -.+.... ++    .....+
T Consensus       178 ~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~------~~~li~De~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  250 (422)
T 3d6k_A          178 QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAP------DFRIVWDNAYALHTLSDE-FPIVHNVIEFAQAAGNPNRF  250 (422)
T ss_dssp             TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST------TCEEEEECTTTTCBSSSC-CCCCCCHHHHHHHTTCTTCE
T ss_pred             CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhcc------CCEEEEECCccccccCCC-CCCCcChhhHhhccCCCCcE
Confidence            778877 689999999998776   7777777 88      999999999974  2210 0000111 11    123456


Q ss_pred             EEEEcCCcCCCCCcCeeEEEEe
Q 018437          270 SINVSGHKYGLVYAGVGWVVWR  291 (356)
Q Consensus       270 s~~~~~hK~l~~P~g~g~l~~~  291 (356)
                      .+..+++|+++....+|+++.+
T Consensus       251 i~~~S~SK~~~~GlriG~~~~~  272 (422)
T 3d6k_A          251 WFMSSTSKITHAGSGVSFFASS  272 (422)
T ss_dssp             EEEEESTTTSCTTSSCEEEECC
T ss_pred             EEEcChhhhcCcccceEEEEeC
Confidence            7777899995554679999875

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.67  E-value=5.3e-15  Score=142.88  Aligned_cols=202  Identities=11%  Similarity=-0.025  Sum_probs=130.2

Q ss_pred             ChHHHHHHHHHHhcccCCCc-ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDM-DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      .+|.+.+++.+.+....... ..++  .....++++.+++++|++.     ..+++|+||++|+..++.+++.....   
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~-----~~v~~~~ggtea~~~ai~~~~~~~~~---  129 (429)
T 1s0a_A           60 NHPQLNAAMKSQIDAMSHVMFGGIT--HAPAIELCRKLVAMTPQPL-----ECVFLADSGSVAVEVAMKMALQYWQA---  129 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCCSSEE--CHHHHHHHHHHHHHSCTTC-----CEEEEESSHHHHHHHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHHhcccccccccC--CHHHHHHHHHHHHhCCCCC-----CEEEEeCCHHHHHHHHHHHHHHHhcc---
Confidence            35788888888775432211 1222  2234466777999998764     34899999999999999877532110   


Q ss_pred             hcCCCCCCCeEEecCCCcch-HHHHHHhhC-------------CeeEEEEecC-----CccccCHHHHHHHHh---hCce
Q 018437          147 EQGKPYDKPNIVTGANVQVC-WEKFARYFE-------------VELKEVKLEE-----GYYVMNPVKAVELVD---ENTI  204 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s-~~~~~~~~G-------------~~v~~v~~~~-----~~~~~d~~~L~~~i~---~~~~  204 (356)
                       +|.  .+++|+++.++|+. ...++...|             .+++.++++.     ..+.+|+++|+++++   ++++
T Consensus       130 -~g~--~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  206 (429)
T 1s0a_A          130 -KGE--ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIA  206 (429)
T ss_dssp             -HTC--CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEE
T ss_pred             -cCC--CCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEE
Confidence             111  14578888876543 332332212             1466677642     113689999999997   3555


Q ss_pred             EEEEecC-CCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC
Q 018437          205 CVAAILG-STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (356)
Q Consensus       205 ~v~~~~~-~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l  279 (356)
                      +|+++.. +|++|.+.+    +++|.++|+++      |+++|+|++|.++..  .......+......|.++++  |++
T Consensus       207 ~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~g~--~g~~~~~~~~~~~~d~~t~s--K~l  276 (429)
T 1s0a_A          207 AVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE------GILLIADEIATGFGR--TGKLFACEHAEIAPDILCLG--KAL  276 (429)
T ss_dssp             EEEECSSEECTTTCEEBCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGG
T ss_pred             EEEEeecccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeehhhCCcc--cchHHHhhhcCCCCCEEEec--ccc
Confidence            6665555 689998766    99999999999      999999999986432  11101112111246777655  887


Q ss_pred             CCC-cCeeEEEEeC
Q 018437          280 LVY-AGVGWVVWRT  292 (356)
Q Consensus       280 ~~P-~g~g~l~~~~  292 (356)
                      +++ .++|+++.++
T Consensus       277 ~~G~~~iG~~~~~~  290 (429)
T 1s0a_A          277 TGGTMTLSATLTTR  290 (429)
T ss_dssp             GTSSSCCEEEEECH
T ss_pred             cCCCccceEEEeCH
Confidence            777 7899998764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.65  E-value=7.9e-15  Score=139.97  Aligned_cols=194  Identities=15%  Similarity=0.003  Sum_probs=132.8

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+......+..+  ......++++++++++|.+       .+++|+||++|+..++.+++..+..    
T Consensus        53 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~-------~v~~~~gg~ea~~~al~~~~~~~~~----  119 (395)
T 3nx3_A           53 NHAKFNAKIKAQVDKLLHTSNLY--YNENIAAAAKNLAKASALE-------RVFFTNSGTESIEGAMKTARKYAFN----  119 (395)
T ss_dssp             SCHHHHHHHHHHHTTCSCCCTTS--BCHHHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhcccccccc--CCHHHHHHHHHHHHhcCCC-------eEEEeCCHHHHHHHHHHHHHHHhhc----
Confidence            35788898888876533322222  2345667888899998843       3899999999999999988765321    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhh-------------CCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYF-------------EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~-------------G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      .|  ..+++|++..++|+.+...+..+             +.++..+|.+      |+++|++++++++++|++..++++
T Consensus       120 ~g--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~l~~~l~~~~~~v~~~~~~~~  191 (395)
T 3nx3_A          120 KG--VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN------DISSVEKLVNEKTCAIILESVQGE  191 (395)
T ss_dssp             TT--CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT------CHHHHHTTCCTTEEEEEEESEECT
T ss_pred             cC--CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC------CHHHHHHhccCCeEEEEEeCccCC
Confidence            11  12467888777765433222222             2234444322      799999999988899999999999


Q ss_pred             ccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          215 TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       215 tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      +|.+.+    +++|.++|++|      |+++|+|++|.++..  .......+......|.++++  |.++++.++|+++.
T Consensus       192 ~G~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~~~g~--~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~  261 (395)
T 3nx3_A          192 GGINPANKDFYKALRKLCDEK------DILLIADEIQCGMGR--SGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVI  261 (395)
T ss_dssp             TSCEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEE
T ss_pred             CCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCCc--CCcchhHHhcCCCCCEEEec--ccccCCCceEEEEE
Confidence            999877    99999999999      999999999986432  11101111111245777655  87767788999987


Q ss_pred             eC
Q 018437          291 RT  292 (356)
Q Consensus       291 ~~  292 (356)
                      ++
T Consensus       262 ~~  263 (395)
T 3nx3_A          262 NQ  263 (395)
T ss_dssp             CH
T ss_pred             ch
Confidence            64

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.64  E-value=1.1e-14  Score=140.32  Aligned_cols=195  Identities=11%  Similarity=-0.087  Sum_probs=129.2

Q ss_pred             hHHHHHHHHHHhcccCC-CcccCcchHHHHHHHHHHHHHHhCCC-CCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           69 EPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +|.+.+++.+.+..... ....++  .....++++.+++++|.+ +     ..+++|+||++|+..++.+++..      
T Consensus        61 ~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~-----~~v~~~~gg~ea~~~ai~~~~~~------  127 (419)
T 2eo5_A           61 HPEVIKIGIEQMQKLAHAAANDFY--NIPQLELAKKLVTYSPGNFQ-----KKVFFSNSGTEAIEASIKVVKNT------  127 (419)
T ss_dssp             CHHHHHHHHHHHTTSCCCSCSCSC--CHHHHHHHHHHHHHSSCSSC-----EEEEEESSHHHHHHHHHHHHHTT------
T ss_pred             CHHHHHHHHHHHhhCccccccccC--CHHHHHHHHHHHHhCCCCcC-----CEEEEeCchHHHHHHHHHHHHHh------
Confidence            57899999888764321 111122  234456778899999986 3     24899999999999999887531      


Q ss_pred             hcCCCCCCCeEEecCCCcc-hHHHHHHhh-------------CCeeEEEEecCCccc----------------cCHHHHH
Q 018437          147 EQGKPYDKPNIVTGANVQV-CWEKFARYF-------------EVELKEVKLEEGYYV----------------MNPVKAV  196 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~-s~~~~~~~~-------------G~~v~~v~~~~~~~~----------------~d~~~L~  196 (356)
                            .+++|++++++++ .+..++...             +.+++.+|.+.+ ++                +|+++|+
T Consensus       128 ------~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~g~~~~~~~~~~~~~~~~~l~  200 (419)
T 2eo5_A          128 ------GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNP-YRNPWHINGYENPSELVNRVIEFIE  200 (419)
T ss_dssp             ------SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCS-SSCTTCCCTTTCHHHHHHHHHHHHH
T ss_pred             ------hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcc-ccccccccccccchhhHHHHHHHHH
Confidence                  1467888877654 333333221             135778887542 33                4789999


Q ss_pred             -HHHhh-----CceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCC
Q 018437          197 -ELVDE-----NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP  266 (356)
Q Consensus       197 -~~i~~-----~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  266 (356)
                       +++++     ++++|+++..++++|.+.+    +++|.++|++|      ++++|+|++|.++..  .......+....
T Consensus       201 ~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~------~~~li~DE~~~~~g~--~g~~~~~~~~~~  272 (419)
T 2eo5_A          201 DYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKY------GILLVDDEVQMGLGR--TGKLFAIENFNT  272 (419)
T ss_dssp             HTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTC
T ss_pred             HHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--CcchhhHHhcCC
Confidence             99873     4556655544567898666    99999999999      999999999986532  111011121112


Q ss_pred             CceEEEEcCCcCCCCC-cCeeEEEEeCC
Q 018437          267 LVKSINVSGHKYGLVY-AGVGWVVWRTK  293 (356)
Q Consensus       267 ~~Ds~~~~~hK~l~~P-~g~g~l~~~~~  293 (356)
                      ..|.+++  .|.++++ .++|+++.+++
T Consensus       273 ~~d~~t~--sK~~~~G~~riG~~~~~~~  298 (419)
T 2eo5_A          273 VPDVITL--AKALGGGIMPIGATIFRKD  298 (419)
T ss_dssp             CCSEEEE--CGGGGTTTSCCEEEEEEGG
T ss_pred             CCCEEEe--cccccCCccceEEEEEchH
Confidence            4576654  4877666 88999998753

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.64  E-value=9.9e-15  Score=140.86  Aligned_cols=195  Identities=13%  Similarity=-0.085  Sum_probs=131.5

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.........+  ......++++++++++|.+       .+++|+||++|+..++.+++..+..    
T Consensus        74 ~~p~v~~ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~ggteA~~~al~~~~~~~~~----  140 (420)
T 2pb2_A           74 CHPALVEALKSQGETLWHTSNVF--TNEPALRLGRKLIDATFAE-------RVLFMNSGTEANETAFKLARHYACV----  140 (420)
T ss_dssp             TCHHHHHHHHHHHTTCCCCCTTS--CCHHHHHHHHHHHHHSSCS-------EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhcccccCcc--CCHHHHHHHHHHHhhCCCC-------eEEEeCCHHHHHHHHHHHHHHHhhh----
Confidence            35788898888776432211111  2345667888899998854       3899999999999999988764321    


Q ss_pred             cCCCCCCCeEEecCCCcc-hHHHHHHhhCCe------------eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          148 QGKPYDKPNIVTGANVQV-CWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~-s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      .|.+ ++++||+++++|+ ....++...|.+            +..+|.      .|+++|++++++++++|+++.++++
T Consensus       141 ~~~~-g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~le~~i~~~~~~vi~~p~~~~  213 (420)
T 2pb2_A          141 RHSP-FKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF------NDLHAVKAVMDDHTCAVVVEPIQGE  213 (420)
T ss_dssp             HTCT-TCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT------TCHHHHHHHCCTTEEEEEECSEETT
T ss_pred             ccCC-CCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC------CCHHHHHHHhccCceEEEEeCCcCC
Confidence            1111 1347887776654 444455555543            344442      2899999999988999998888887


Q ss_pred             ccc----cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          215 TGE----FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       215 tG~----~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      +|.    .+++++|.++|+++      |+++|+|++|.++..  .......+..-...|.++  .+|+++++.++|+++.
T Consensus       214 gG~~~~~~~~l~~l~~l~~~~------gi~lI~Dev~~g~~~--~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~~~  283 (420)
T 2pb2_A          214 GGVQAATPEFLKGLRDLCDEH------QALLVFDEVQCGMGR--TGDLFAYMHYGVTPDILT--SAKALGGGFPVSAMLT  283 (420)
T ss_dssp             TTSEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEE
T ss_pred             CCeecCCHHHHHHHHHHHHHc------CCEEEEEcCCcCccc--CCcHHHHHhcCCCCCeEE--ecccccCCCceEEEEE
Confidence            776    36899999999999      999999999976422  111011111112467775  4699887777999998


Q ss_pred             eC
Q 018437          291 RT  292 (356)
Q Consensus       291 ~~  292 (356)
                      ++
T Consensus       284 ~~  285 (420)
T 2pb2_A          284 TQ  285 (420)
T ss_dssp             CH
T ss_pred             hH
Confidence            65

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.63  E-value=1.8e-14  Score=139.19  Aligned_cols=203  Identities=10%  Similarity=-0.049  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+... .++...........++++++++.++.+.     ..+++|+||++|+..++.+++..+..    .
T Consensus        47 ~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~ea~~~al~~~~~~~~~----~  116 (430)
T 3i4j_A           47 RAEVGERMAAQAARL-PFVHGSQFSSDVLEEYAGRLARFVGLPT-----FRFWAVSGGSEATESAVKLARQYHVE----R  116 (430)
T ss_dssp             CHHHHHHHHHHHHHC-CCCCTTTCEEHHHHHHHHHHHHHTTCTT-----CEEEEESSHHHHHHHHHHHHHHHHHH----T
T ss_pred             CHHHHHHHHHHHHhc-ccccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCcHHHHHHHHHHHHHHHHHh----c
Confidence            578888887776542 2222222334566678888999998765     24899999999999999998765432    1


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCC---------------eeEEEEecCC--ccccCHHHHHHHHh----hCceEEE
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEV---------------ELKEVKLEEG--YYVMNPVKAVELVD----ENTICVA  207 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~---------------~v~~v~~~~~--~~~~d~~~L~~~i~----~~~~~v~  207 (356)
                      |. ..+++|++.+++|+.+...+..++.               ++..+|.+..  .+..|+++|+++++    +++++|+
T Consensus       117 g~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi  195 (430)
T 3i4j_A          117 GE-PGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFM  195 (430)
T ss_dssp             TC-TTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEE
T ss_pred             CC-CCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEE
Confidence            21 1246888888887765544433332               4445554321  13457789999997    4456666


Q ss_pred             EecCCC-cccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCC
Q 018437          208 AILGST-LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLV  281 (356)
Q Consensus       208 ~~~~~~-~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~  281 (356)
                      ++..++ ++|.+.+    +++|.++|++|      |+++|+|++|.++...  ......+.. ....|.++++  |.+.+
T Consensus       196 ~~p~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~~~~~~--g~~~~~~~~~~~~~di~t~s--K~l~~  265 (430)
T 3i4j_A          196 AEPVVGASDAALAPAPGYYERVRDICDEA------GIIFIADEVMSGMGRC--GSPLALSRWSGVTPDIAVLG--KGLAA  265 (430)
T ss_dssp             ECSSCCGGGTTCCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTTT--SSSSGGGGTTTCCCSEEEEC--GGGTT
T ss_pred             EcCcccCcCCcccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCcc--cchhhhhhhcCCCCcEEEEc--ccccC
Confidence            666666 8888766    99999999999      9999999999875321  110011111 1135666654  98766


Q ss_pred             C-cCeeEEEEeC
Q 018437          282 Y-AGVGWVVWRT  292 (356)
Q Consensus       282 P-~g~g~l~~~~  292 (356)
                      . ..+|+++.++
T Consensus       266 G~~r~G~~~~~~  277 (430)
T 3i4j_A          266 GYAPLAGLLAAP  277 (430)
T ss_dssp             TSSCCEEEEECH
T ss_pred             CccccEEEEECH
Confidence            5 6688888743

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.63  E-value=3.3e-15  Score=149.06  Aligned_cols=215  Identities=12%  Similarity=0.029  Sum_probs=143.5

Q ss_pred             ccccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHH-HHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH
Q 018437           59 NLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCV-NMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        59 ~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~-~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (356)
                      +|+.+.+..+++.+.+++.+.+..  ..|....+...+.+++. .++.+.++..........+++|+|+++++.+++.++
T Consensus       108 ~l~~g~~~~~~~~~~~al~~~~~~--~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l  185 (546)
T 2zy4_A          108 SYVRDQLGLDPAAFLHEMVDGILG--CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESL  185 (546)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHT--CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHH
T ss_pred             ecccCCCCCCChHHHHHHHHhhhc--CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHh
Confidence            344445555556666666555532  23333334555665544 455555543110000134899999999999988874


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhh--CCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF--EVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~--G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      ..+.        .-..+++|+++.|+|+.+...+...  |++++.+|++++ ++.+|+++|++++++++++|++++|+||
T Consensus       186 ~~~~--------l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NP  257 (546)
T 2zy4_A          186 KLNG--------LLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNP  257 (546)
T ss_dssp             HHTT--------SSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSS
T ss_pred             hhhh--------cCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCC
Confidence            2110        0012578999999999999887654  577888888653 3789999999988888999999999999


Q ss_pred             ccccCC---HHHHHHHH--HHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEE
Q 018437          215 TGEFED---VKLLHDLL--TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWV  288 (356)
Q Consensus       215 tG~~~~---i~~I~~i~--~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l  288 (356)
                      ||.+.+   +++|.++|  +++      ++++++|++|+.+...   ....... ....+.+..|++|+++ ....+|++
T Consensus       258 tG~~~~~~~l~~l~~~a~~~~~------~~~ii~De~y~~~~~~---~~s~~~~-~~~~~i~~~S~SK~~g~~GlRiG~~  327 (546)
T 2zy4_A          258 PSVKMDQRSLERVRNIVAEHRP------DLMILTDDVYGTFADD---FQSLFAI-CPENTLLVYSFSKYFGATGWRLGVV  327 (546)
T ss_dssp             SCBCCCHHHHHHHHHHHHHTCT------TCEEEEECTTGGGSTT---CCCHHHH-CGGGEEEEEESTTTTTCGGGCEEEE
T ss_pred             CCccCCHHHHHHHHHHHHhccC------CcEEEEeCcchhhccc---CcCHHHh-CCCCEEEEEeCccccCCCCcceEEE
Confidence            999966   56678888  677      9999999999976431   1001111 2245677888999874 34568999


Q ss_pred             EEeCC
Q 018437          289 VWRTK  293 (356)
Q Consensus       289 ~~~~~  293 (356)
                      +..++
T Consensus       328 ~~~~~  332 (546)
T 2zy4_A          328 AAHQQ  332 (546)
T ss_dssp             EEESS
T ss_pred             EECCH
Confidence            88764

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.61  E-value=3.4e-14  Score=136.69  Aligned_cols=198  Identities=9%  Similarity=-0.100  Sum_probs=126.3

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+.+......... ........++++.++++++.+.    ...+++|+||++|+..++..++...      
T Consensus        58 ~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~----~~~v~~~~g~~~a~~~~~~~a~~~~------  126 (426)
T 1sff_A           58 LHPKVVAAVEAQLKKLSHTCFQ-VLAYEPYLELCEIMNQKVPGDF----AKKTLLVTTGSEAVENAVKIARAAT------  126 (426)
T ss_dssp             TCHHHHHHHHHHTTTCSCCCTT-TEECHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCCCcccc-ccCCHHHHHHHHHHHHhCCccc----ccEEEEeCchHHHHHHHHHHHHHhh------
Confidence            4578889888887643211101 1112334466677888883221    0248999999999999988543211      


Q ss_pred             cCCCCCCCeEEecCCCcc-hHHHHHHhhCCe-------------eEEEEecC----CccccCHHHHHHHHh-----hCce
Q 018437          148 QGKPYDKPNIVTGANVQV-CWEKFARYFEVE-------------LKEVKLEE----GYYVMNPVKAVELVD-----ENTI  204 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~-s~~~~~~~~G~~-------------v~~v~~~~----~~~~~d~~~L~~~i~-----~~~~  204 (356)
                           .+++|++.+++|+ .+..++...|.+             ++.+|++.    ..+.+|+++|+++++     ++++
T Consensus       127 -----~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~  201 (426)
T 1sff_A          127 -----KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIA  201 (426)
T ss_dssp             -----TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEE
T ss_pred             -----CCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceE
Confidence                 0237777777664 444566665543             77788753    125689999999997     4566


Q ss_pred             EEEEec-CCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC
Q 018437          205 CVAAIL-GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (356)
Q Consensus       205 ~v~~~~-~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l  279 (356)
                      +|+++. ++| ||.+.+    +++|.++|+++      ++++|+|++|+++..  .......+.....+|.+  +++|++
T Consensus       202 ~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~di~--s~sK~~  270 (426)
T 1sff_A          202 AIVIEPVQGE-GGFYASSPAFMQRLRALCDEH------GIMLIADEVQSGAGR--TGTLFAMEQMGVAPDLT--TFAKSI  270 (426)
T ss_dssp             EEEECSBCTT-TTSCBCCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTSCCSEE--EECGGG
T ss_pred             EEEEecccCC-CCcccCCHHHHHHHHHHHHHc------CCEEEEechhhccCc--ccchhhhhhcCCCCCEE--EEcccc
Confidence            776644 345 997777    99999999999      999999999996432  11101112111236766  456988


Q ss_pred             CCCcCeeEEEEeC
Q 018437          280 LVYAGVGWVVWRT  292 (356)
Q Consensus       280 ~~P~g~g~l~~~~  292 (356)
                      +....+|+++.++
T Consensus       271 ~~GlriG~~~~~~  283 (426)
T 1sff_A          271 AGGFPLAGVTGRA  283 (426)
T ss_dssp             GTSSCCEEEEEEH
T ss_pred             cCCCceEEEEEcH
Confidence            6544579999875

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.60  E-value=1.1e-13  Score=134.77  Aligned_cols=199  Identities=11%  Similarity=-0.028  Sum_probs=130.0

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+.....  ...........+++++++++++.+.     . +++|+||++|+..++.+++..+..    .
T Consensus        67 ~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~~~~-----~-v~~~~ggseA~~~al~~~~~~~~~----~  134 (452)
T 3n5m_A           67 RKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLGGEY-----V-IFFSNSGSEANETAFKIARQYYAQ----K  134 (452)
T ss_dssp             CHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHTSCE-----E-EEEESSHHHHHHHHHHHHHHHHHT----T
T ss_pred             CHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCCCCc-----e-EEEeCchHHHHHHHHHHHHHHHHh----c
Confidence            57889998888764322  1122334566788889999998764     2 899999999999999998754311    1


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhCC-------------eeEEEEecCCcccc------------CHHHHHHHHh---
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFEV-------------ELKEVKLEEGYYVM------------NPVKAVELVD---  200 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G~-------------~v~~v~~~~~~~~~------------d~~~L~~~i~---  200 (356)
                      |.+ .+++|++.+++|+.+...+..++.             ++..++.... ++.            ++++|+++++   
T Consensus       135 g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~le~~l~~~~  212 (452)
T 3n5m_A          135 GEP-HRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDC-YRMPGIERENIYDVECVKEVDRVMTWEL  212 (452)
T ss_dssp             TCT-TCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCT-TTSTTTTTSCGGGCHHHHHHHHHHHHHC
T ss_pred             CCC-CCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCcc-ccCccCCchhhHHHHHHHHHHHHHHhcC
Confidence            110 246788877776554333332221             2445554211 111            1899999997   


Q ss_pred             -hCceEEEEecC-CCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEc
Q 018437          201 -ENTICVAAILG-STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (356)
Q Consensus       201 -~~~~~v~~~~~-~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~  274 (356)
                       +++++|+++.+ +| +|.+.+    +++|.++|++|      |+++|+|++|.++...  ......+......|.++++
T Consensus       213 ~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~g~~--g~~~~~~~~~~~~di~t~s  283 (452)
T 3n5m_A          213 SETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH------GALLISDEVICGFGRT--GKAFGFMNYDVKPDIITMA  283 (452)
T ss_dssp             GGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTTT--SSSSGGGGTTCCCSEEEEC
T ss_pred             CCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc------CCEEEEecchhCCCcc--cccchhhhcCCCCCEEeec
Confidence             45677777777 78 998876    99999999999      9999999999875321  1100111111235777654


Q ss_pred             CCcCCCCC-cCeeEEEEeC
Q 018437          275 GHKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       275 ~hK~l~~P-~g~g~l~~~~  292 (356)
                        |.++++ .++|+++.++
T Consensus       284 --K~l~~G~~~ig~~~~~~  300 (452)
T 3n5m_A          284 --KGITSAYLPLSATAVKR  300 (452)
T ss_dssp             --GGGGTTSSCCEEEEEEH
T ss_pred             --ccccCCCcceEEEEECH
Confidence              876666 7889998764

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.60  E-value=6.7e-14  Score=135.65  Aligned_cols=197  Identities=12%  Similarity=-0.075  Sum_probs=121.6

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.........+  ......++.+.+++++|.+       .+++|+||++|+..++.+++.....   .
T Consensus        82 ~~p~v~~ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~sGseA~~~al~~a~~~~~~---~  149 (433)
T 1z7d_A           82 CHPNILNAMINQAKNLTICSRAF--FSVPLGICERYLTNLLGYD-------KVLMMNTGAEANETAYKLCRKWGYE---V  149 (433)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTS--EEHHHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH---T
T ss_pred             CCHHHHHHHHHHHHhCCCccCCc--CCHHHHHHHHHHHhhcCCC-------eEEEeCCHHHHHHHHHHHHHHHhhh---c
Confidence            56889999888876432211112  2334556777888888854       3899999999999999987642110   0


Q ss_pred             cCCCCCCCeEEecCCCcch-HHHHHHhhC------------CeeEEEEecCCccccCHHHHHHHH-hhCceEEEEecCCC
Q 018437          148 QGKPYDKPNIVTGANVQVC-WEKFARYFE------------VELKEVKLEEGYYVMNPVKAVELV-DENTICVAAILGST  213 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s-~~~~~~~~G------------~~v~~v~~~~~~~~~d~~~L~~~i-~~~~~~v~~~~~~~  213 (356)
                      .|...++++|++++++|.. ...++...|            .+++.+|.      .|+++|++++ ++++++|+++..++
T Consensus       150 ~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le~~l~~~~~~~vi~ep~~~  223 (433)
T 1z7d_A          150 KKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY------DDLEALEEELKDPNVCAFIVEPIQG  223 (433)
T ss_dssp             SCCCTTCCEEEEETTC--------------------------CEEEECT------TCHHHHHHHHTSTTEEEEEECSSBS
T ss_pred             cCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC------CCHHHHHHHhCCCCEEEEEEECCCC
Confidence            1111113678888776544 343444434            23334432      2899999999 56777777776667


Q ss_pred             cccccC----CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-cCeeEE
Q 018437          214 LTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWV  288 (356)
Q Consensus       214 ~tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l  288 (356)
                      ++|.+.    ++++|.++|+++      |+++|+|++|.++..  .......+..-...|.++  ..|++++. ...|++
T Consensus       224 ~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~g~--~g~~~~~~~~~~~~di~t--~sK~l~~G~~~~G~v  293 (433)
T 1z7d_A          224 EAGVIVPSDNYLQGVYDICKKY------NVLFVADEVQTGLGR--TGKLLCVHHYNVKPDVIL--LGKALSGGHYPISAV  293 (433)
T ss_dssp             TTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEE--ECGGGGTTSSCCEEE
T ss_pred             CCCccCCCHHHHHHHHHHHHHc------CCEEEEecCccCCCc--CCcchhhHhcCCCCCEEE--ECccccCCCCCeEEE
Confidence            789764    799999999999      999999999976422  111011111112467765  46988765 468999


Q ss_pred             EEeC
Q 018437          289 VWRT  292 (356)
Q Consensus       289 ~~~~  292 (356)
                      +.++
T Consensus       294 ~~~~  297 (433)
T 1z7d_A          294 LAND  297 (433)
T ss_dssp             EECH
T ss_pred             EECH
Confidence            8864

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.59  E-value=7.3e-14  Score=135.74  Aligned_cols=201  Identities=13%  Similarity=-0.003  Sum_probs=129.0

Q ss_pred             hHHHHHHHHHHhcccCCCcccC-cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           69 EPECDKLVMASINKNYVDMDEY-PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~-~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +|.+.+++.+.+....  +... ........++++.++++++.+.     ..+++|+||++|+..++.+++.....    
T Consensus        68 ~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~ggsea~~~al~~~~~~~~~----  136 (449)
T 3a8u_X           68 RKEIQEAVAKQLSTLD--YSPGFQYGHPLSFQLAEKITDLTPGNL-----NHVFFTDSGSECALTAVKMVRAYWRL----  136 (449)
T ss_dssp             CHHHHHHHHHHTTTCS--CCCSSSCCCHHHHHHHHHHHTTSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEcCcHHHHHHHHHHHHHHHHHh----
Confidence            5789999988876432  1111 2233455677888999887654     34899999999999999988753211    


Q ss_pred             cCCCCCCCeEEecCCCcc-hHHHHHHhhC------------CeeEEEEecCCccc-----cC--------HHHHHHHHh-
Q 018437          148 QGKPYDKPNIVTGANVQV-CWEKFARYFE------------VELKEVKLEEGYYV-----MN--------PVKAVELVD-  200 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~-s~~~~~~~~G------------~~v~~v~~~~~~~~-----~d--------~~~L~~~i~-  200 (356)
                      .|.+ .+++|++.+++|+ ....++...|            .+++.++++.. +.     +|        +++|+++++ 
T Consensus       137 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~d~~~~~~~~~~~le~~l~~  214 (449)
T 3a8u_X          137 KGQA-TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLL-ASNAYSRGMPKEGGIALADELLKLIEL  214 (449)
T ss_dssp             TTCT-TCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCC-GGGTTCSSSCSSSHHHHHHHHHHHHHH
T ss_pred             cCCC-CCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCcc-ccCccccCChHHHHHHHHHHHHHHHHh
Confidence            1111 1457887666654 3344454443            24566665431 22     46        999999997 


Q ss_pred             ---hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEE
Q 018437          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (356)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~  273 (356)
                         +++++|+++..++++|.+.|    +++|.++|++|      ++++|+|++|.++..  .......+..-...|.+++
T Consensus       215 ~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~~~g~--~g~~~~~~~~~~~~di~s~  286 (449)
T 3a8u_X          215 HDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQH------NILLVFDEVITGFGR--TGSMFGADSFGVTPDLMCI  286 (449)
T ss_dssp             HCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSHHHHHTCCCSEEEE
T ss_pred             cCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHh------CCEEEEeccccCccc--cCcchhhhhcCCCCCEEEE
Confidence               45666666655577998888    99999999999      999999999965422  1110011111113576654


Q ss_pred             cCCcCCCCC-cCeeEEEEeC
Q 018437          274 SGHKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       274 ~~hK~l~~P-~g~g~l~~~~  292 (356)
                        .|++.+. ..+|++++++
T Consensus       287 --sK~l~~G~~~~G~~~~~~  304 (449)
T 3a8u_X          287 --AKQVTNGAIPMGAVIAST  304 (449)
T ss_dssp             --CGGGGTTSSCCEEEEEEH
T ss_pred             --cccccCCCCceEEEEECH
Confidence              5987643 3488888864

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.59  E-value=2e-14  Score=139.16  Aligned_cols=198  Identities=9%  Similarity=-0.134  Sum_probs=129.1

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+... .++....+......+++++++++++...+    ..+++|+||++|+..++.+++...      
T Consensus        60 ~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~ggsea~~~al~~~~~~~------  128 (439)
T 3dxv_A           60 GHPAIVAAVSAAAANP-AGATILSASNAPAVTLAERLLASFPGEGT----HKIWFGHSGSDANEAAYRAIVKAT------  128 (439)
T ss_dssp             SCHHHHHHHHHHHHSC-SCSCSSSSEEHHHHHHHHHHHHTTTCTTT----EEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCCCCC----CEEEEeCCHHHHHHHHHHHHHHHh------
Confidence            4578888888777643 23322334456677888999999865431    248999999999999999875431      


Q ss_pred             cCCCCCCCeEEecCCC-cchHHHHHHhhCCee--------------EEEEecCCcccc-----CHHHHHHHH----hhCc
Q 018437          148 QGKPYDKPNIVTGANV-QVCWEKFARYFEVEL--------------KEVKLEEGYYVM-----NPVKAVELV----DENT  203 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~-h~s~~~~~~~~G~~v--------------~~v~~~~~~~~~-----d~~~L~~~i----~~~~  203 (356)
                           .+++|++.++. |..+..++...|...              ..+|.+.. +.-     |+++|++++    .+++
T Consensus       129 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~  202 (439)
T 3dxv_A          129 -----GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPY-RNDPTGDAILTLLTEKLAAVPAGSI  202 (439)
T ss_dssp             -----SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCB-TTBTTSHHHHHHHHHHHHTSCTTCE
T ss_pred             -----CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcc-cccccHHHHHHHHHHHHHhcCCCCE
Confidence                 13456665555 445544444433322              23343321 122     799999999    4567


Q ss_pred             eEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC
Q 018437          204 ICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (356)
Q Consensus       204 ~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l  279 (356)
                      ++|+++.+++++|.+.+    +++|.++|++|      ++++|+|++|+++..  .......+......|.++  ..|.+
T Consensus       203 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DE~~~g~g~--~g~~~~~~~~~~~~di~s--~sK~~  272 (439)
T 3dxv_A          203 GAAFIEPIQSDGGLIVPPDGFLRKFADICRAH------GILVVCDEVKVGLAR--SGRLHCFEHEGFVPDILV--LGKGL  272 (439)
T ss_dssp             EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTCTTT--TSSSSGGGGTTCCCSEEE--ECGGG
T ss_pred             EEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CchhhHHHhcCCCCCEEE--Ecchh
Confidence            88888888889999888    99999999999      999999999986422  111011111112356664  45987


Q ss_pred             CCCcCeeEEEEeC
Q 018437          280 LVYAGVGWVVWRT  292 (356)
Q Consensus       280 ~~P~g~g~l~~~~  292 (356)
                      ++...+|+++.++
T Consensus       273 ~~G~riG~~~~~~  285 (439)
T 3dxv_A          273 GGGLPLSAVIAPA  285 (439)
T ss_dssp             GTTSCCEEEEEEH
T ss_pred             cCCcceEEEEECH
Confidence            7666789988764

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.58  E-value=5.7e-14  Score=133.73  Aligned_cols=197  Identities=12%  Similarity=0.037  Sum_probs=129.7

Q ss_pred             CChHHHHHHHHHHhcccC--CCc-----ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCC--eEEeCChhHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNY--VDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAV--GVGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~--~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~--~~~t~Ggt~a~~~al~~~  137 (356)
                      ..++.|.+++.+.+.+..  ++|     ..-....++|.-+++...++||++..    .|  .+-..+|+.||+.++.++
T Consensus        65 ~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A----~w~VNVQP~SGs~AN~avy~Al  140 (490)
T 3ou5_A           65 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA----QWGVNVQPYSGSPANLAVYTAL  140 (490)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTT----TEEEECCCSSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCcc----ccCCCCCcCCHHHHHHHHHHHH
Confidence            456888888877665321  111     11224678999999999999999862    22  355668999999999998


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCC---cchHH-----HHHHhhCC--eeEEEEecCCccccCHHHHHHHHhh-CceEE
Q 018437          138 KRKWQQKRKEQGKPYDKPNIVTGANV---QVCWE-----KFARYFEV--ELKEVKLEEGYYVMNPVKAVELVDE-NTICV  206 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi~s~~~---h~s~~-----~~~~~~G~--~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v  206 (356)
                      .++             +++|+..+..   |.+.-     ......|.  ++...++|++++.+|.+++++...+ +|++|
T Consensus       141 l~P-------------GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklI  207 (490)
T 3ou5_A          141 LQP-------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLI  207 (490)
T ss_dssp             CC--------------CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEE
T ss_pred             cCC-------------CCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeE
Confidence            765             5777765543   43322     11222233  3455566776799999999998865 78887


Q ss_pred             EEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCee
Q 018437          207 AAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (356)
Q Consensus       207 ~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g  286 (356)
                      ++-...+  -...|++++.+||++.      |.+|++|.|+-.+++.  ....+--  ++.+|.++.+.||.|.+|.| |
T Consensus       208 i~G~SaY--~r~id~~~~reIAd~v------GA~Lm~DmAHiaGLVA--~g~~psP--~~~ADvVTtTTHKTLrGPrG-G  274 (490)
T 3ou5_A          208 IAGTSAY--ARLIDYARMREVCDEV------KAHLLADMAHISGLVA--AKVIPSP--FKHADIVTTTTHKTLRGARS-G  274 (490)
T ss_dssp             EECCSSC--CSCCCHHHHHHHHHHH------TCEEEEECGGGHHHHH--TTSSCCG--GGTCSEEEEESSSTTCSCSC-E
T ss_pred             EECCccC--ccccCHHHHHHHHhhc------ccEEEechhhhhhhhc--ccccCCc--cccceEEeccccccccCCCc-e
Confidence            7433333  3556899999999999      9999999998554441  2211111  34699999999999999987 8


Q ss_pred             EEEEeCC
Q 018437          287 WVVWRTK  293 (356)
Q Consensus       287 ~l~~~~~  293 (356)
                      ++++++.
T Consensus       275 ~Il~~~~  281 (490)
T 3ou5_A          275 LIFYRKG  281 (490)
T ss_dssp             EEEEECS
T ss_pred             EEEeccc
Confidence            8888763

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.57  E-value=5.9e-14  Score=135.72  Aligned_cols=193  Identities=12%  Similarity=-0.001  Sum_probs=120.2

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.......  ++  .....++++++++.++ +.     ..+++|+|||+|+..++.+++...      
T Consensus        72 ~~p~v~~a~~~~~~~~~~~~--~~--~~~~~~l~~~la~~~~-~~-----~~v~~~~sGsea~~~ai~~a~~~~------  135 (434)
T 3l44_A           72 AHPHITKAITTAAENGVLYG--TP--TALEVKFAKMLKEAMP-AL-----DKVRFVNSGTEAVMTTIRVARAYT------  135 (434)
T ss_dssp             TCHHHHHHHHHHHHHCSCCS--SC--CHHHHHHHHHHHHHCT-TC-----SEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCcCCC--CC--CHHHHHHHHHHHHhCC-CC-----CEEEEeCchHHHHHHHHHHHHHhh------
Confidence            35788888887776432211  12  2234456677888876 33     248999999999999999886531      


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHH-hhCCeeEEEEecCCccc-------------cCHHHHHHHHh---hCceEEEEec
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFAR-YFEVELKEVKLEEGYYV-------------MNPVKAVELVD---ENTICVAAIL  210 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~-~~G~~v~~v~~~~~~~~-------------~d~~~L~~~i~---~~~~~v~~~~  210 (356)
                           .+++|++..++|+.+...+. ..|..+..+......+.             -|+++|+++++   +++++|+++.
T Consensus       136 -----~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep  210 (434)
T 3l44_A          136 -----GRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEP  210 (434)
T ss_dssp             -----CCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECS
T ss_pred             -----CCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcC
Confidence                 14678887777654333222 22222111111100011             18999999997   3566777777


Q ss_pred             CCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCee
Q 018437          211 GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (356)
Q Consensus       211 ~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g  286 (356)
                      .++++|.+.+    +++|.++|++|      |+++|+|++|.++ .  .......+..-...|.++++  |.++++.++|
T Consensus       211 ~~~~~G~~~~~~~~l~~l~~l~~~~------~illI~DEv~~g~-~--~g~~~~~~~~~~~~di~t~s--K~~~~G~~iG  279 (434)
T 3l44_A          211 IVGNFGIVEPKPGFLEKVNELVHEA------GALVIYDEVITAF-R--FMYGGAQDLLGVTPDLTALG--KVIGGGLPIG  279 (434)
T ss_dssp             SBCTTSCBCCCTTHHHHHHHHHHTT------TCEEEEECTTTTT-T--SSSSCHHHHHTCCCSEEEEE--GGGGTTSSCE
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccce-e--ccccHHHHHcCCCCCeeehh--hhhcCCcCee
Confidence            7777777777    99999999999      9999999999875 2  11111111111235666654  8877888899


Q ss_pred             EEEEeC
Q 018437          287 WVVWRT  292 (356)
Q Consensus       287 ~l~~~~  292 (356)
                      +++.++
T Consensus       280 ~~~~~~  285 (434)
T 3l44_A          280 AYGGKK  285 (434)
T ss_dssp             EEEECH
T ss_pred             eEEEcH
Confidence            997653

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.57  E-value=1.3e-13  Score=133.95  Aligned_cols=197  Identities=13%  Similarity=-0.043  Sum_probs=126.5

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.........++  .....++.+++++++|.+       .+++++||++|+..++.+++.....   .
T Consensus        93 ~~p~v~~Ai~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~g~~-------~v~~~~sGseA~~~al~~~~~~~~~---~  160 (439)
T 2oat_A           93 CHPKIVNALKSQVDKLTLTSRAFY--NNVLGEYEEYITKLFNYH-------KVLPMNTGVEAGETACKLARKWGYT---V  160 (439)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTSE--ESSHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH---T
T ss_pred             CCHHHHHHHHHHHHhcCcccCccC--CHHHHHHHHHHHHhcCCC-------EEEEeCCHHHHHHHHHHHHHHHhhh---c
Confidence            568899999888764321111111  123445666788888754       3899999999999999988643211   0


Q ss_pred             cCCCCCCCeEEecCCCc-chHHHHHHhhC------------CeeEEEEecCCccccCHHHHHHHHh-hCceEEEEecCCC
Q 018437          148 QGKPYDKPNIVTGANVQ-VCWEKFARYFE------------VELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGST  213 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h-~s~~~~~~~~G------------~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~  213 (356)
                      +|...++++||+.+++| .+...++...|            .+++.+|.+      |+++|+++++ +++++|+++..++
T Consensus       161 ~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~------d~~~le~~l~~~~~~~vi~ep~~~  234 (439)
T 2oat_A          161 KGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN------DLPALERALQDPNVAAFMVEPIQG  234 (439)
T ss_dssp             TCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS------CHHHHHHHTTSTTEEEEEECSSBT
T ss_pred             cCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC------CHHHHHHHhCCCCEEEEEEECCCC
Confidence            11111135777777654 44455555444            345555532      8999999994 6677777766667


Q ss_pred             cccccC----CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-cCeeEE
Q 018437          214 LTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWV  288 (356)
Q Consensus       214 ~tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l  288 (356)
                      ++|.+.    ++++|.++|++|      |+++|+|++|.++..  .......+..-...|.+  +..|+++++ ...|++
T Consensus       235 ~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~g~g~--~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G~v  304 (439)
T 2oat_A          235 EAGVVVPDPGYLMGVRELCTRH------QVLFIADEIQTGLAR--TGRWLAVDYENVRPDIV--LLGKALSGGLYPVSAV  304 (439)
T ss_dssp             TTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEE
T ss_pred             CCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--CCcchhHHHhCCCCcEE--EecccccCCCCCeEEE
Confidence            789765    799999999999      999999999976422  11101111111245766  456988765 568999


Q ss_pred             EEeC
Q 018437          289 VWRT  292 (356)
Q Consensus       289 ~~~~  292 (356)
                      +.++
T Consensus       305 ~~~~  308 (439)
T 2oat_A          305 LCDD  308 (439)
T ss_dssp             EECH
T ss_pred             EECH
Confidence            8864

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.56  E-value=4.5e-14  Score=136.19  Aligned_cols=232  Identities=14%  Similarity=0.083  Sum_probs=154.6

Q ss_pred             HHHHHHHHHhhhcCCCCcccccccC------CCChHHHHHHHHHHhcccCC-CcccCcchHHHHHHHHHHHHHHhCCCCC
Q 018437           41 AAYQVINDELMLDGNPRLNLASFVT------TWMEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVA  113 (356)
Q Consensus        41 ~i~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l~g~~~~  113 (356)
                      .|+... +.+..+.+|..||+.++.      ++..|.|+++.....+.+.. .|....|..++.+++.+++   +|-...
T Consensus        31 ~i~~l~-~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~---~g~~~~  106 (420)
T 4h51_A           31 VIFDLA-KRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKII---YGNTVE  106 (420)
T ss_dssp             HHHHHH-HHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH---HC---C
T ss_pred             hHHHHH-HHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHh---cCCCcc
Confidence            344433 334556677788876531      13347888887766655544 3667778889988876654   343321


Q ss_pred             CCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeE-EEEe-cCCccccC
Q 018437          114 DDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELK-EVKL-EEGYYVMN  191 (356)
Q Consensus       114 ~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~-~v~~-~~~~~~~d  191 (356)
                      . .....+.|.|||.|+..++..+...+         ...+++|++|+|+|.++....+..|++.+ ..+. +++++.+|
T Consensus       107 ~-~~~~~~qt~ggtga~~~a~~~l~~~~---------~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d  176 (420)
T 4h51_A          107 L-ENLVAVQTLSGTGAVSLGAKLLTRVF---------DAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLN  176 (420)
T ss_dssp             G-GGEEEEEEEHHHHHHHHHHHHHTTTS---------CTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEEC
T ss_pred             c-cccceeeecCchHHHHHHHHHHHHhc---------CCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCC
Confidence            1 12235668999999988887665321         11257899999999999999999999844 4443 34458899


Q ss_pred             HHHHHHHHh---hCceEEEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc---
Q 018437          192 PVKAVELVD---ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD---  262 (356)
Q Consensus       192 ~~~L~~~i~---~~~~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~---  262 (356)
                      .+.+.+.+.   +++++++.++|+||||.+   +.+++|.++|+++      ++++++|.+|.++...-.. .....   
T Consensus       177 ~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~------~~~~~~D~~Y~~~~~~~~~-~~~~~~~~  249 (420)
T 4h51_A          177 FEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAK------HHQVFFDSAYQGYASGSLD-TDAYAARL  249 (420)
T ss_dssp             HHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTTSCHH-HHTHHHHH
T ss_pred             HHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc------CceEeeehhhhhhccCCcc-cchHHHHh
Confidence            999888875   356788889999999998   5678899999999      9999999999886541000 00000   


Q ss_pred             ccCCCc-eEEEEcCCcC-CCCCcCeeEEEEeCC
Q 018437          263 FRLPLV-KSINVSGHKY-GLVYAGVGWVVWRTK  293 (356)
Q Consensus       263 ~~~~~~-Ds~~~~~hK~-l~~P~g~g~l~~~~~  293 (356)
                      +...+. -.+.-|+.|. ++..+.+|++++..+
T Consensus       250 ~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~  282 (420)
T 4h51_A          250 FARRGIEVLLAQSFSKNMGLYSERAGTLSLLLK  282 (420)
T ss_dssp             HHHTTCCCEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             HHhhCceEEEEeccccccccccCceEEEEeccc
Confidence            001111 2334467884 555688999987653

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.56  E-value=2e-13  Score=131.72  Aligned_cols=187  Identities=13%  Similarity=-0.008  Sum_probs=124.1

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+..... +. +  ......++.+++++.++ +.     ..+++|+||++|+..++..++...      
T Consensus        69 ~~p~v~~a~~~~~~~~~~-~~-~--~~~~~~~la~~l~~~~~-~~-----~~v~~~~ggsea~~~al~~a~~~~------  132 (427)
T 3fq8_A           69 AHPEVIEALKVAMEKGTS-FG-A--PCALENVLAEMVNDAVP-SI-----EMVRFVNSGTEACMAVLRIMRAYT------  132 (427)
T ss_dssp             TCHHHHHHHHHHHTTCSC-CS-S--CCHHHHHHHHHHHHHST-TC-----SEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCCC-cC-C--CCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHhh------
Confidence            357889998888764322 11 1  33456678888999987 33     248999999999999998776431      


Q ss_pred             cCCCCCCCeEEecCCCcchHHH-HHHhhCCe-------------------eEEEEecCCccccCHHHHHHHHhh---Cce
Q 018437          148 QGKPYDKPNIVTGANVQVCWEK-FARYFEVE-------------------LKEVKLEEGYYVMNPVKAVELVDE---NTI  204 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~-~~~~~G~~-------------------v~~v~~~~~~~~~d~~~L~~~i~~---~~~  204 (356)
                       |    +++|++..++|+.+.. +....|.+                   +..+|.+      |+++|++++++   +++
T Consensus       133 -~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~~  201 (427)
T 3fq8_A          133 -G----RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN------DLEAVKALFAENPGEIA  201 (427)
T ss_dssp             -C----CCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT------CHHHHHHHHHHSTTTEE
T ss_pred             -C----CCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC------CHHHHHHHHHhCCCCEE
Confidence             1    3567776666543222 11111111                   2222211      89999999986   677


Q ss_pred             EEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC
Q 018437          205 CVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (356)
Q Consensus       205 ~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~  280 (356)
                      +|+++.+++++|.+.+    +++|.++|++|      |+++|+|++|+++ .  .......+......|.++++  |.++
T Consensus       202 ~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~g~-~--~g~~~~~~~~~~~~di~t~s--K~~~  270 (427)
T 3fq8_A          202 GVILEPIVGNSGFIVPDAGFLEGLREITLEH------DALLVFDEVITGF-R--IAYGGVQEKFGVTPDLTTLG--KIIG  270 (427)
T ss_dssp             EEEECSSBCTTSCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTBT-T--TBTTHHHHHTTCCCSEEEEC--GGGG
T ss_pred             EEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecccccc-c--cCcchhhHhcCCCCChhhhh--hhhh
Confidence            8888888888899888    99999999999      9999999999865 2  11111111111235666655  9887


Q ss_pred             CCcCeeEEEEeC
Q 018437          281 VYAGVGWVVWRT  292 (356)
Q Consensus       281 ~P~g~g~l~~~~  292 (356)
                      +...+|+++.++
T Consensus       271 ~G~~~G~~~~~~  282 (427)
T 3fq8_A          271 GGLPVGAYGGKR  282 (427)
T ss_dssp             TTSSCEEEEECH
T ss_pred             CCcceEEEEEcH
Confidence            666789987743

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.55  E-value=5.2e-13  Score=129.78  Aligned_cols=203  Identities=13%  Similarity=0.006  Sum_probs=124.5

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.... ++...........++.++++++++.+.     ..+++|+||++|+..++.+++..+..    
T Consensus        61 ~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~sGseA~~~al~~~~~~~~~----  130 (448)
T 3dod_A           61 RKKELDDAIKKQLGKIA-HSTLLGMTNVPATQLAETLIDISPKKL-----TRVFYSDSGAEAMEIALKMAFQYWKN----  130 (448)
T ss_dssp             SCHHHHHHHHHHHTTCS-CCCCSSSEEHHHHHHHHHHHHHSCTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence            35788998888776432 221222334556678889999986543     24899999999999999999875322    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhC-------------CeeEEEEecCCcccc-----------CHHHHHHHHh---
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFE-------------VELKEVKLEEGYYVM-----------NPVKAVELVD---  200 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G-------------~~v~~v~~~~~~~~~-----------d~~~L~~~i~---  200 (356)
                      .|. ..+++|++.+++|+.+...+..++             .++..+|.+. .++.           |+++|+++++   
T Consensus       131 ~G~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~  208 (448)
T 3dod_A          131 IGK-PEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPY-VYRSESGDPDECRDQCLRELAQLLEEHH  208 (448)
T ss_dssp             TTC-TTCCEEEEEC-----------------------------CEEECCCC-CTTSSSCCHHHHHHHHHHHHHHHHHHHG
T ss_pred             hCC-CCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCc-cccCCccchhhhhHHHHHHHHHHHHhCC
Confidence            111 114688888887655433332222             2344555543 2333           4899999997   


Q ss_pred             hCceEEEEecCC-CcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcC
Q 018437          201 ENTICVAAILGS-TLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSG  275 (356)
Q Consensus       201 ~~~~~v~~~~~~-~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~  275 (356)
                      +++++|++...+ +++|.+.+    +++|.++|++|      |+++|+|++|.++...  .........-...|.++++ 
T Consensus       209 ~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~lI~DEv~~g~g~~--g~~~a~~~~~~~~di~t~s-  279 (448)
T 3dod_A          209 EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTY------DVLMIVDEVATGFGRT--GKMFACEHENVQPDLMAAG-  279 (448)
T ss_dssp             GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHT------TCEEEEECTTTTTTTT--SSSSGGGGGTCCCSEEEEC-
T ss_pred             CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHh------CCEEEEeccccCCCcc--cchhhhhhcCCCCCEEEec-
Confidence            345666666665 77787755    99999999999      9999999999865321  1100111111235666654 


Q ss_pred             CcCCCCCc-CeeEEEEeC
Q 018437          276 HKYGLVYA-GVGWVVWRT  292 (356)
Q Consensus       276 hK~l~~P~-g~g~l~~~~  292 (356)
                       |.+.+++ .+|+++.++
T Consensus       280 -K~l~~G~~~ig~v~~~~  296 (448)
T 3dod_A          280 -KGITGGYLPIAVTFATE  296 (448)
T ss_dssp             -GGGGTTSSCCEEEEEEH
T ss_pred             -ccccCCcCceEEEEECH
Confidence             9887764 788888764

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.55  E-value=1.9e-13  Score=133.36  Aligned_cols=204  Identities=13%  Similarity=-0.049  Sum_probs=131.0

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+......+...........++.++++++++.+.     ..+++|+||++|+..++.+++..+..    .
T Consensus        69 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~gGseA~~~al~~~~~~~~~----~  139 (460)
T 3gju_A           69 RQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGM-----SRVYFGLSGSDANETNIKLIWYYNNV----L  139 (460)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----T
T ss_pred             CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCc-----CEEEEeCchHHHHHHHHHHHHHHHHh----c
Confidence            57888888877764332232222334566678888999876554     24899999999999999999875421    1


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhh-------------CCeeEEEEecCC----ccccC--------HHHHHHHHh---
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYF-------------EVELKEVKLEEG----YYVMN--------PVKAVELVD---  200 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~-------------G~~v~~v~~~~~----~~~~d--------~~~L~~~i~---  200 (356)
                      |.+ .+++|++.+++++.+...+..+             +.++..+|+...    +..++        +++|+++++   
T Consensus       140 g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~  218 (460)
T 3gju_A          140 GRP-EKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG  218 (460)
T ss_dssp             TCT-TCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCC-CCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC
Confidence            211 2467887777665433333222             124566664321    11122        689999887   


Q ss_pred             -hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcC
Q 018437          201 -ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSG  275 (356)
Q Consensus       201 -~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~  275 (356)
                       +++++|++...++++|.+.+    +++|.++|++|      |+++|+|++|.++..  .......+..-...|.++++ 
T Consensus       219 ~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~g~~~~~~~~~~~pdi~t~s-  289 (460)
T 3gju_A          219 PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY------DVLLVADEVVTGFGR--LGTMFGSDHYGIKPDLITIA-  289 (460)
T ss_dssp             GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSCHHHHHTCCCSEEEEC-
T ss_pred             CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--ccccchHhhcCCCCCeeeee-
Confidence             45677777777777777655    99999999999      999999999987532  11000111111235677655 


Q ss_pred             CcCCCCC-cCeeEEEEeC
Q 018437          276 HKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       276 hK~l~~P-~g~g~l~~~~  292 (356)
                       |.+.++ ..+|+++.++
T Consensus       290 -K~l~gG~~~lg~v~~~~  306 (460)
T 3gju_A          290 -KGLTSAYAPLSGVIVAD  306 (460)
T ss_dssp             -GGGTTTSSCCEEEEEEH
T ss_pred             -hhhcCCCCCeEEEEECH
Confidence             987665 5789888764

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.55  E-value=1.7e-13  Score=132.36  Aligned_cols=193  Identities=10%  Similarity=-0.016  Sum_probs=120.1

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+..........+    ...++++.++++++ +.     ..+++|+||++|+..++.+++...      
T Consensus        70 ~~p~v~~A~~~~~~~~~~~~~~~~----~~~~l~~~la~~~~-~~-----~~v~~~~~Gsea~~~ai~~a~~~~------  133 (429)
T 3k28_A           70 ANDRVVEALKAVAERGTSFGAPTE----IENKLAKLVIERVP-SI-----EIVRMVNSGTEATMSALRLARGYT------  133 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCSSCCH----HHHHHHHHHHHHST-TC-----SEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHhhCcCcCCCCH----HHHHHHHHHHHhCC-CC-----CEEEEeCChHHHHHHHHHHHHHhh------
Confidence            357888988877765322222222    33456667888875 22     248999999999999999887531      


Q ss_pred             cCCCCCCCeEEecCCCcch-HHHHHHhhCCeeEEEEecCCcccc-------------CHHHHHHHHh---hCceEEEEec
Q 018437          148 QGKPYDKPNIVTGANVQVC-WEKFARYFEVELKEVKLEEGYYVM-------------NPVKAVELVD---ENTICVAAIL  210 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s-~~~~~~~~G~~v~~v~~~~~~~~~-------------d~~~L~~~i~---~~~~~v~~~~  210 (356)
                       |    +++|++.+++|+. ...++...|.++..++.....+..             |+++|+++++   +++++|++..
T Consensus       134 -~----~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep  208 (429)
T 3k28_A          134 -G----RNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEP  208 (429)
T ss_dssp             -T----CCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECS
T ss_pred             -C----CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcC
Confidence             1    3567776665543 323222233333222221111111             8999999987   3566777777


Q ss_pred             CCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCee
Q 018437          211 GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (356)
Q Consensus       211 ~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g  286 (356)
                      .++++|.+.+    +++|.++|++|      |+++|+|++|.++ .  .......+..-...|.++++  |.++++.++|
T Consensus       209 ~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~g~-~--~g~~~~~~~~~~~~di~t~s--K~~~~G~~iG  277 (429)
T 3k28_A          209 VAGNMGVVPPQPGFLEGLREVTEQN------GALLIFDEVMTGF-R--VAYNCGQGYYGVTPDLTCLG--KVIGGGLPVG  277 (429)
T ss_dssp             SBCTTSCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTT-T--SSTTHHHHHHTCCCSEEEEC--GGGGTTSCCE
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEecccccc-c--cCcchHHHHhCCCCceehhh--hhhcCCCCeE
Confidence            7777788877    99999999999      9999999999865 2  11100011111235666654  8877778899


Q ss_pred             EEEEeC
Q 018437          287 WVVWRT  292 (356)
Q Consensus       287 ~l~~~~  292 (356)
                      +++.++
T Consensus       278 ~~~~~~  283 (429)
T 3k28_A          278 AYGGKA  283 (429)
T ss_dssp             EEEECH
T ss_pred             EEEEcH
Confidence            988754

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.55  E-value=1.8e-13  Score=133.49  Aligned_cols=203  Identities=12%  Similarity=-0.024  Sum_probs=131.6

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+.....++...........++.++++++++.+.     ..+++|+||++|+..++.+++..+..    .
T Consensus        68 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~ggseA~~~al~~~~~~~~~----~  138 (459)
T 4a6r_A           68 RKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF-----DRVFYTNSGSESVDTMIRMVRRYWDV----Q  138 (459)
T ss_dssp             CHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTC-----CEEEEESSHHHHHHHHHHHHHHHHHH----T
T ss_pred             CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCchHHHHHHHHHHHHHHHHh----c
Confidence            57888888887765432332222334566788889999987654     24899999999999999999875421    1


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhC-------------CeeEEEEecC----CccccC--------HHHHHHHHh---
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFE-------------VELKEVKLEE----GYYVMN--------PVKAVELVD---  200 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G-------------~~v~~v~~~~----~~~~~d--------~~~L~~~i~---  200 (356)
                      |.+ .+++|++..++|+.+...+..++             .++..+++..    +.+ +|        +++|++++.   
T Consensus       139 g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~  216 (459)
T 4a6r_A          139 GKP-EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIG  216 (459)
T ss_dssp             TCT-TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCC-CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcC
Confidence            211 24678887777665443333332             1355566432    112 45        788999886   


Q ss_pred             -hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcC
Q 018437          201 -ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSG  275 (356)
Q Consensus       201 -~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~  275 (356)
                       +++++|++...++++|.+.+    +++|.++|++|      |+++|+|++|.++..  ..............|.++++ 
T Consensus       217 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~G~~~~~~~~~~~pdi~t~s-  287 (459)
T 4a6r_A          217 ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY------DVLLVADEVICGFGR--TGEWFGHQHFGFQPDLFTAA-  287 (459)
T ss_dssp             GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTCCCSEEEEC-
T ss_pred             CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--ccccchHhhcCCCCCeeehh-
Confidence             34566666666666677666    99999999999      999999999987532  11100111111245777765 


Q ss_pred             CcCCCCC-cCeeEEEEeC
Q 018437          276 HKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       276 hK~l~~P-~g~g~l~~~~  292 (356)
                       |.+.++ ..+|+++.++
T Consensus       288 -K~l~gg~~~lg~v~~~~  304 (459)
T 4a6r_A          288 -KGLSSGYLPIGAVFVGK  304 (459)
T ss_dssp             -GGGGTTSSCCEEEEECH
T ss_pred             -hhhcCCCCCccceeeCH
Confidence             877655 6788888753

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.55  E-value=2.1e-13  Score=131.69  Aligned_cols=196  Identities=15%  Similarity=-0.050  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+.........+  ......++.+.+++++|.+.     ..+++|+||++|+..++.+++.. .      
T Consensus        61 ~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~ea~~~a~~~~~~~-~------  126 (433)
T 1zod_A           61 HPEIVSVIGEYAGKLDHLFSEM--LSRPVVDLATRLANITPPGL-----DRALLLSTGAESNEAAIRMAKLV-T------  126 (433)
T ss_dssp             CHHHHHHHHHHHHHCCCCCTTC--CCHHHHHHHHHHHHHSCTTC-----CEEEEESCHHHHHHHHHHHHHHH-H------
T ss_pred             CHHHHHHHHHHHHhCccccccc--CCHHHHHHHHHHHHhCCCCc-----CEEEEeCchHHHHHHHHHHHHHh-h------
Confidence            5788888887775432111112  22455677788999998764     24899999999999999877542 1      


Q ss_pred             CCCCCCCeEEecCCCcch-HHHHHHhh-----------CCeeEEEEecCC-----------ccccCHHHHHHHHhh----
Q 018437          149 GKPYDKPNIVTGANVQVC-WEKFARYF-----------EVELKEVKLEEG-----------YYVMNPVKAVELVDE----  201 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s-~~~~~~~~-----------G~~v~~v~~~~~-----------~~~~d~~~L~~~i~~----  201 (356)
                      |    +++|++.+++|+. ...+....           ..+++.++++..           .+.+|+++|++++++    
T Consensus       127 ~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~  202 (433)
T 1zod_A          127 G----KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSG  202 (433)
T ss_dssp             T----CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCS
T ss_pred             C----CCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCC
Confidence            1    3578877776543 32222221           124566665321           023579999999973    


Q ss_pred             CceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCc
Q 018437          202 NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHK  277 (356)
Q Consensus       202 ~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK  277 (356)
                      ++++|+++..++++|.+.+    +++|.++|++|      |+++|+|++|.++..  .......+......|.+++  .|
T Consensus       203 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~~~g~--~g~~~~~~~~~~~~di~s~--sK  272 (433)
T 1zod_A          203 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR------GMLLILDEAQTGVGR--TGTMFACQRDGVTPDILTL--SK  272 (433)
T ss_dssp             CEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEE--CH
T ss_pred             CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--CchHhHHhhcCCCCCEEEe--cc
Confidence            5556665544577897655    99999999999      999999999986432  1110111111123566654  48


Q ss_pred             CCCCCcCeeEEEEeC
Q 018437          278 YGLVYAGVGWVVWRT  292 (356)
Q Consensus       278 ~l~~P~g~g~l~~~~  292 (356)
                      .++++.++|+++.++
T Consensus       273 ~~~~G~~ig~~~~~~  287 (433)
T 1zod_A          273 TLGAGLPLAAIVTSA  287 (433)
T ss_dssp             HHHTTSSCEEEEECH
T ss_pred             cccCCCCeeEEEEhH
Confidence            876677899998864

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.54  E-value=2.9e-13  Score=132.64  Aligned_cols=204  Identities=13%  Similarity=0.018  Sum_probs=131.9

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+......+...........++.++++++++.+.     ..+++++||++|+..++++++..+..    
T Consensus        72 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~-----~~v~~~~sGseA~~~aik~a~~~~~~----  142 (472)
T 3hmu_A           72 GRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDL-----NHVFFAGGGSEANDTNIRMVRTYWQN----  142 (472)
T ss_dssp             CCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCHHHHHHHHHHHHHHHHHh----
Confidence            357899998887765332222222334455678888999986643     24899999999999999999875421    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCC------------eeEEEEecCCccc----cC--------HHHHHHHHh---
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEV------------ELKEVKLEEGYYV----MN--------PVKAVELVD---  200 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~------------~v~~v~~~~~~~~----~d--------~~~L~~~i~---  200 (356)
                      .|.+ .+.+||+..+++..+...+..++.            ++..++... .++    .|        +++|+++++   
T Consensus       143 ~g~~-~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~~~~~~~~~~~~~~~le~~i~~~~  220 (472)
T 3hmu_A          143 KGQP-EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPN-WWAEGGDMDPEEFGLARARELEEAILELG  220 (472)
T ss_dssp             TTCT-TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCC-HHHHCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCC-CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCc-cccCCcccCHHHHHHHHHHHHHHHHHhcC
Confidence            1211 245777777665543333333222            355666432 112    34        788999886   


Q ss_pred             -hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcC
Q 018437          201 -ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSG  275 (356)
Q Consensus       201 -~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~  275 (356)
                       +++++|++...++++|.+.+    +++|.++|+++      |+++|+|++|.++..  ..........-...|.++++ 
T Consensus       221 ~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~------gillI~DEv~~gfgr--~G~~~a~~~~~v~pdi~t~s-  291 (472)
T 3hmu_A          221 ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKY------DILLIADEVICGFGR--TGNWFGTQTMGIRPHIMTIA-  291 (472)
T ss_dssp             GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSCHHHHHTCCCSEEEEC-
T ss_pred             CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEccccCCcc--cCccchhHHhCCCCceeeec-
Confidence             45667777777777788776    99999999999      999999999987533  11000111111245777765 


Q ss_pred             CcCCCCC-cCeeEEEEeC
Q 018437          276 HKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       276 hK~l~~P-~g~g~l~~~~  292 (356)
                       |.+.++ ..+|+++.++
T Consensus       292 -K~l~gg~~plG~v~~~~  308 (472)
T 3hmu_A          292 -KGLSSGYAPIGGSIVCD  308 (472)
T ss_dssp             -GGGTTTSSCCEEEEEEH
T ss_pred             -hhhhcCCcceEEEEECH
Confidence             987665 5788888764

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.53  E-value=6.3e-13  Score=129.37  Aligned_cols=204  Identities=11%  Similarity=-0.042  Sum_probs=125.8

Q ss_pred             ChHHHH-H-HHHH---HhcccCCCcccCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           68 MEPECD-K-LVMA---SINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        68 ~~~~v~-~-~i~~---~~~~~~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      .+|.+. + ++.+   .+.... ++.. ....+...++.+.++++++ .+.     ..+++|+||++|+..++.+++...
T Consensus        71 ~~p~v~~~~A~~~~~~~~~~~~-~~~~-~~~~~~~~~la~~la~~~~~~~~-----~~v~~~~~gseA~~~aik~a~~~~  143 (449)
T 2cjg_A           71 NPPALVDDREFHAELMQAALNK-PSNS-DVYSVAMARFVETFARVLGDPAL-----PHLFFVEGGALAVENALKAAFDWK  143 (449)
T ss_dssp             SCHHHHTCHHHHHHHHHHHTCC-CCTT-TCCCHHHHHHHHHHHHHHCCTTC-----CEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcC-CCCc-ccCCHHHHHHHHHHHHhcCCCCC-----CEEEEeCchHHHHHHHHHHHHHHh
Confidence            357888 8 8887   554332 1111 1223345567778888887 222     348999999999999999876432


Q ss_pred             HHHHHhcCCCCC-CCeEEecCCCcchHHHH-HHhh--------CC-----eeEEEEecC--Cc-------cccCHHHHHH
Q 018437          142 QQKRKEQGKPYD-KPNIVTGANVQVCWEKF-ARYF--------EV-----ELKEVKLEE--GY-------YVMNPVKAVE  197 (356)
Q Consensus       142 ~~~~~~~g~~~~-~~~vi~s~~~h~s~~~~-~~~~--------G~-----~v~~v~~~~--~~-------~~~d~~~L~~  197 (356)
                      ..+....|.+.. +++||+..++|+.+... ....        +.     +++.+|.++  ..       ...|+++|++
T Consensus       144 ~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~  223 (449)
T 2cjg_A          144 SRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARA  223 (449)
T ss_dssp             HHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHH
Confidence            211000111111 46888888766543221 1211        22     456666643  11       1367788999


Q ss_pred             HHh---hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceE
Q 018437          198 LVD---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKS  270 (356)
Q Consensus       198 ~i~---~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds  270 (356)
                      +++   +++++|+++..+|++|.+.+    +++|.++|++|      |+++|+|++|.++..  ..............|.
T Consensus       224 ~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~lli~DEv~~g~g~--~g~~~~~~~~~~~~di  295 (449)
T 2cjg_A          224 AFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEF------DALLIFDEVQTGCGL--TGTAWAYQQLDVAPDI  295 (449)
T ss_dssp             HHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSE
T ss_pred             HHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHC------CcEEEEeccccCCCc--cCcceeecccCCCceE
Confidence            995   56778877777788997766    99999999999      999999999986432  1110011111124577


Q ss_pred             EEEcCCcCCCCCcCeeEEEEeC
Q 018437          271 INVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       271 ~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      ++++  |++  |  +|+++.++
T Consensus       296 ~t~s--K~l--~--iG~~~~~~  311 (449)
T 2cjg_A          296 VAFG--KKT--Q--VCGVMAGR  311 (449)
T ss_dssp             EEEC--GGG--S--SEEEEECG
T ss_pred             EEec--Ccc--c--EEEEEECH
Confidence            7654  987  4  68888764

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.52  E-value=2.1e-13  Score=133.07  Aligned_cols=204  Identities=12%  Similarity=-0.030  Sum_probs=131.7

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+...... ...........+++++++++++.+.     ..+++|+||++|+..++.+++..+..+   
T Consensus        92 ~~p~v~~A~~~~~~~~~~~-~~~~~~~~~~~~L~e~la~~~~~~~-----~~v~~~~sGseA~~~Alk~a~~~~~~~---  162 (457)
T 3tfu_A           92 GHPALDQALTTQLRVMNHV-MFGGLTHEPAARLAKLLVDITPAGL-----DTVFFSDSGSVSVEVAAKMALQYWRGR---  162 (457)
T ss_dssp             TCHHHHHHHHHHHHHCSCC-CSSSEECHHHHHHHHHHHHHSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHHHT---
T ss_pred             CCHHHHHHHHHHHHhccCc-cccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCcHHHHHHHHHHHHHHHHHhc---
Confidence            3578888888777543221 1111223445578888999997654     248999999999999999998754321   


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhh--------------CCeeEEEEecCC-ccccCHHHHHHHHh---hCceEEEEe
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYF--------------EVELKEVKLEEG-YYVMNPVKAVELVD---ENTICVAAI  209 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~--------------G~~v~~v~~~~~-~~~~d~~~L~~~i~---~~~~~v~~~  209 (356)
                       |.+ ++.+||+.+++|+.....+..+              ..++..+|.... ....|+++|+++++   +++++|++.
T Consensus       163 -g~~-g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~e  240 (457)
T 3tfu_A          163 -GLP-GKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVE  240 (457)
T ss_dssp             -TCT-TCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred             -CCC-CCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence             211 1346777666654432222222              224555555322 12358899999998   567788888


Q ss_pred             c-CCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-c
Q 018437          210 L-GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-A  283 (356)
Q Consensus       210 ~-~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~  283 (356)
                      . +++++|.+.+    +++|.++|++|      |+++|+|++|.++..  .......+..-...|.+++  .|.+.++ .
T Consensus       241 p~~~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~g~gr--~G~~~a~~~~~~~pdiit~--sK~l~gG~~  310 (457)
T 3tfu_A          241 PVVQGAGGMRFHDPRYLHDLRDICRRY------EVLLIFDEIATGFGR--TGALFAADHAGVSPDIMCV--GKALTGGYL  310 (457)
T ss_dssp             SSEECTTTCEECCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEE--CGGGGTTSS
T ss_pred             CCCcCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEcCccCCcc--ccchhHhHhcCCCceEEEE--ChhhhCCCc
Confidence            7 7899998865    99999999999      999999999987432  1110011111124577755  4887665 4


Q ss_pred             CeeEEEEeC
Q 018437          284 GVGWVVWRT  292 (356)
Q Consensus       284 g~g~l~~~~  292 (356)
                      ..|+++.++
T Consensus       311 ~lG~v~~~~  319 (457)
T 3tfu_A          311 SLAATLCTA  319 (457)
T ss_dssp             CCEEEEEEH
T ss_pred             ceEEEEEcH
Confidence            789888865

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.51  E-value=4.7e-13  Score=131.28  Aligned_cols=204  Identities=12%  Similarity=-0.087  Sum_probs=131.4

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+......+. +........++.++++++++.+.     ..+++++||++|+..++.+++..+..    
T Consensus        71 ~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~sGseA~~~Aik~a~~~~~~----  140 (476)
T 3i5t_A           71 GRREIVDAMAHQAMVLPYASP-WYMATSPAARLAEKIATLTPGDL-----NRIFFTTGGSTAVDSALRFSEFYNNV----  140 (476)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCT-TTCBCHHHHHHHHHHHTTSSTTC-----CEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhccCccc-CccCCHHHHHHHHHHHhcCCCCc-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence            357888988877764322221 12334566688889999986554     24899999999999999999876532    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCC-------------eeEEEEecCC-cc-ccC--------HHHHHHHHh----
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEV-------------ELKEVKLEEG-YY-VMN--------PVKAVELVD----  200 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~-------------~v~~v~~~~~-~~-~~d--------~~~L~~~i~----  200 (356)
                      .|. .++++||+..++|+.+...+..++.             ++..++.... .. ..|        +++|+++++    
T Consensus       141 ~g~-~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  219 (476)
T 3i5t_A          141 LGR-PQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGP  219 (476)
T ss_dssp             TTC-TTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCG
T ss_pred             cCC-CCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCC
Confidence            121 1245777777766544333332221             2445553221 01 122        788999886    


Q ss_pred             hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-ccCCCceEEEEcC
Q 018437          201 ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSG  275 (356)
Q Consensus       201 ~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Ds~~~~~  275 (356)
                      +++++|++..++++.|.+.+    +++|.++|++|      |+++|+|++|.++..  ........ ..-...|.++++ 
T Consensus       220 ~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~------gillI~DEv~~g~gr--~G~~~~~~~~~~v~pdi~t~s-  290 (476)
T 3i5t_A          220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKH------DILYISDEVVTGFGR--CGEWFASEKVFGVVPDIITFA-  290 (476)
T ss_dssp             GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSCHHHHTTCCCCSEEEEC-
T ss_pred             CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCcc--ccCceeeecccCCCcchhhhh-
Confidence            45678888888888887655    99999999999      999999999987532  11100111 111135777765 


Q ss_pred             CcCCCCC-cCeeEEEEeC
Q 018437          276 HKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       276 hK~l~~P-~g~g~l~~~~  292 (356)
                       |.+.++ ...|+++.++
T Consensus       291 -K~l~~G~~plg~v~~~~  307 (476)
T 3i5t_A          291 -KGVTSGYVPLGGLAISE  307 (476)
T ss_dssp             -GGGGTTSSCCEEEEECH
T ss_pred             -hhhcCCCcCeEEEEECH
Confidence             888776 6788888754

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.51  E-value=2.5e-13  Score=131.35  Aligned_cols=187  Identities=13%  Similarity=-0.084  Sum_probs=121.8

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.... .+ .  .......++.++++++++ ..     ..+++|+||++|+..++.+++...      
T Consensus        73 ~~~~v~~a~~~~~~~~~-~~-~--~~~~~~~~l~~~la~~~~-~~-----~~v~~~~sgseA~~~al~~ar~~~------  136 (434)
T 2epj_A           73 KHPRVLEAVEEALARGW-LY-G--APGEAEVLLAEKILGYVK-RG-----GMIRFVNSGTEATMTAIRLARGYT------  136 (434)
T ss_dssp             TCHHHHHHHHHHHHTCS-CC-S--SCCHHHHHHHHHHHHHHC-TT-----CEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCC-CC-C--CCCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHhh------
Confidence            45788898888776432 11 1  123455677888888884 22     238999999999999999865321      


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHH-H-------------hhCC------eeEEEEecCCccccCHHHHHHHHhh---Cce
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFA-R-------------YFEV------ELKEVKLEEGYYVMNPVKAVELVDE---NTI  204 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~-~-------------~~G~------~v~~v~~~~~~~~~d~~~L~~~i~~---~~~  204 (356)
                           .+++||+.+++|+.+...+ .             ..|+      .+..+|.      .|+++|++++++   +++
T Consensus       137 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~  205 (434)
T 2epj_A          137 -----GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY------NDVEALERVFAEYGDRIA  205 (434)
T ss_dssp             -----CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET------TCHHHHHHHHHHHGGGEE
T ss_pred             -----CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC------CCHHHHHHHHHhCCCCEE
Confidence                 1356777766654422211 1             1232      2344442      289999999974   567


Q ss_pred             EEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC
Q 018437          205 CVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (356)
Q Consensus       205 ~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~  280 (356)
                      +|+++..++++|.+.|    +++|.++|++|      |+++|+|++|+++ .  .......+..-...|.++  .+|+++
T Consensus       206 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~-~--~g~~~~~~~~~~~~di~s--~sK~l~  274 (434)
T 2epj_A          206 GVIVEPVIANAGVIPPRREFLAALQRLSRES------GALLILDEVVTGF-R--LGLEGAQGYFNIEGDIIV--LGKIIG  274 (434)
T ss_dssp             EEEECSSBCSSSCBCCCHHHHHHHHHHHHHH------TCEEEEEETTTTT-T--SSTTHHHHHHTCCCSEEE--EEGGGG
T ss_pred             EEEEeCCcCCCCccCCCHHHHHHHHHHHHHc------CCEEEEEcchhce-e--CCcchhhHHhCCCCCeee--ecchhc
Confidence            7776666677999888    99999999999      9999999999864 2  111001111111356654  459887


Q ss_pred             CCcCeeEEEEeC
Q 018437          281 VYAGVGWVVWRT  292 (356)
Q Consensus       281 ~P~g~g~l~~~~  292 (356)
                      +...+|+++.++
T Consensus       275 ~G~~~G~v~~~~  286 (434)
T 2epj_A          275 GGFPVGAVAGSR  286 (434)
T ss_dssp             TTSSCEEEEECH
T ss_pred             CCcceeeeeecH
Confidence            666789998764

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.51  E-value=7.3e-13  Score=128.86  Aligned_cols=187  Identities=12%  Similarity=-0.014  Sum_probs=119.5

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.... .+   ....+++.++.+++++.++ +.     ..+++|+||++|+..++.+++...      
T Consensus        74 ~~~~v~~a~~~~~~~~~-~~---~~~~~~~~~la~~l~~~~~-~~-----~~v~~~~gg~eA~~~al~~ar~~~------  137 (453)
T 2cy8_A           74 GHPRVNAAIAEALSHGV-QY---AASHPLEVRWAERIVAAFP-SI-----RKLRFTGSGTETTLLALRVARAFT------  137 (453)
T ss_dssp             TCHHHHHHHHHHHTTTC-SS---CSSCHHHHHHHHHHHHHCT-TC-----SEEEEESCHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHhhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHhh------
Confidence            45788999888876422 11   2345688899999999885 33     248999999999999999865321      


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHh-----------hCCe------eEEEEecCCccccCHHHHHHHHhh---CceEEE
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARY-----------FEVE------LKEVKLEEGYYVMNPVKAVELVDE---NTICVA  207 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~-----------~G~~------v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~  207 (356)
                           .+++||+.+++|+.+...+..           .|+.      +..+|     + .|+++|++++++   ++++|+
T Consensus       138 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~-~d~~~le~~l~~~~~~~~~vi  206 (453)
T 2cy8_A          138 -----GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR-----P-DDIEGMREVFANHGSDIAAFI  206 (453)
T ss_dssp             -----CCCEEEEECC----------------------------CGGGEEEEC-----T-TCHHHHHHHHHHHGGGEEEEE
T ss_pred             -----CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC-----C-CCHHHHHHHHHhcCCCEEEEE
Confidence                 135677777766543322111           1331      22222     1 389999999973   566776


Q ss_pred             EecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc
Q 018437          208 AILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA  283 (356)
Q Consensus       208 ~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~  283 (356)
                      ++..++++|.+.|    +++|.++|++|      |+++++|++|+++ .  .......+..-...|.++  ..|+++++.
T Consensus       207 ~ep~~~~tG~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~-~--~g~~~~~~~~~~~~di~s--~sK~l~~G~  275 (453)
T 2cy8_A          207 AEPVGSHFGVTPVSDSFLREGAELARQY------GALFILDEVISGF-R--VGNHGMQALLDVQPDLTC--LAKASAGGL  275 (453)
T ss_dssp             ECSSEHHHHTEECCHHHHHHHHHHHHHT------TCEEEEECTTTTT-T--TCTTHHHHHHTCCCSEEE--EEGGGGTTS
T ss_pred             ECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecCcccc-c--cCchhhhHHhCCCCcEEE--EChhhhCCc
Confidence            6666677998877    99999999999      9999999999864 2  111001111111356654  459887767


Q ss_pred             CeeEEEEeC
Q 018437          284 GVGWVVWRT  292 (356)
Q Consensus       284 g~g~l~~~~  292 (356)
                      ++|+++.++
T Consensus       276 ~~G~v~~~~  284 (453)
T 2cy8_A          276 PGGILGGRE  284 (453)
T ss_dssp             SCEEEEECH
T ss_pred             ceEEEechH
Confidence            889998864

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.50  E-value=9.4e-13  Score=128.29  Aligned_cols=198  Identities=10%  Similarity=-0.039  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+.... ++.......+...+++++++++++.+.    ...+++|+||+||+..+++.++...       
T Consensus        82 ~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~----~~~v~~~~sGseA~~~alk~a~~~~-------  149 (453)
T 4ffc_A           82 HPAVAAAIADQATHFT-HTCFMVTPYEQYVQVAELLNALTPGDH----DKRTALFNSGAEAVENAIKVARLAT-------  149 (453)
T ss_dssp             CHHHHHHHHHHHHHCS-CCTTTTSCCHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHHH-------
T ss_pred             CHHHHHHHHHHHHhcc-ccccCcCCCHHHHHHHHHHHHhCCCCC----CcEEEEeCcHHHHHHHHHHHHHHhc-------
Confidence            5788888887776432 222222334556678888999987542    1248999999999999998876531       


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhC--------------CeeEEEEecCC-----------ccccCHHHHHHHHhhCc
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFE--------------VELKEVKLEEG-----------YYVMNPVKAVELVDENT  203 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G--------------~~v~~v~~~~~-----------~~~~d~~~L~~~i~~~~  203 (356)
                      |    +++|++.+++|+.+...+..++              .++..+|+...           .+..+++.|++++.+++
T Consensus       150 g----~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~  225 (453)
T 4ffc_A          150 G----RPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQS  225 (453)
T ss_dssp             C----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGG
T ss_pred             C----CCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCC
Confidence            1    4577777776654333332221              14667776421           11222466777765555


Q ss_pred             eEEEEecCCCccc-ccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcC
Q 018437          204 ICVAAILGSTLTG-EFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY  278 (356)
Q Consensus       204 ~~v~~~~~~~~tG-~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~  278 (356)
                      .+++++.|++++| .+.+    +++|.++|++|      |+++|+|++|.++..  .......+..-...|.++++  |.
T Consensus       226 ~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~g~--~g~~~a~~~~~~~pdi~t~s--K~  295 (453)
T 4ffc_A          226 LAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN------GVVFIADEVQTGFAR--TGAWFASEHEGIVPDIVTMA--KG  295 (453)
T ss_dssp             EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEEC--GG
T ss_pred             EEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEecCccCCCc--ccccchhhhcCCCcchHhhh--hh
Confidence            5666667777665 4444    99999999999      999999999987532  11100111111235666655  98


Q ss_pred             CCCCcCeeEEEEeC
Q 018437          279 GLVYAGVGWVVWRT  292 (356)
Q Consensus       279 l~~P~g~g~l~~~~  292 (356)
                      ++++..+|+++.++
T Consensus       296 ~~~G~~~G~~~~~~  309 (453)
T 4ffc_A          296 IAGGMPLSAVTGRA  309 (453)
T ss_dssp             GGTTSSCEEEEEEH
T ss_pred             hcCCcCeEEEEECH
Confidence            77778889988764

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.48  E-value=3.6e-12  Score=122.97  Aligned_cols=193  Identities=12%  Similarity=0.028  Sum_probs=114.0

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.......  ++  .....++.++++++++ +.     ..+++|+||++|+..++..++...      
T Consensus        70 ~~p~v~~A~~~~~~~~~~~~--~~--~~~~~~la~~l~~~~~-~~-----~~v~~~~sGsea~~~al~~a~~~~------  133 (429)
T 4e77_A           70 NHPAIRQAVIEAVERGLSFG--AP--TEMEVKMAQLVTDLVP-TM-----DMVRMVNSGTEATMSAIRLARGYT------  133 (429)
T ss_dssp             TCHHHHHHHHHHHTTCSCCS--SC--CHHHHHHHHHHHHHST-TC-----SEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCcccC--CC--CHHHHHHHHHHHhhCC-CC-----CEEEEeCcHHHHHHHHHHHHHHhh------
Confidence            35889999988876532211  22  2345567778888886 32     248999999999999999876431      


Q ss_pred             cCCCCCCCeEEecCCCcch-HHHHHHhhCCeeE--EEEecCC----------cc-ccCHHHHHHHHhh---CceEEEEec
Q 018437          148 QGKPYDKPNIVTGANVQVC-WEKFARYFEVELK--EVKLEEG----------YY-VMNPVKAVELVDE---NTICVAAIL  210 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s-~~~~~~~~G~~v~--~v~~~~~----------~~-~~d~~~L~~~i~~---~~~~v~~~~  210 (356)
                       +    +++|++..+.|+. ...++...|....  ..|....          .. .-|+++|++++++   ++++|+++.
T Consensus       134 -~----~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep  208 (429)
T 4e77_A          134 -G----RDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEP  208 (429)
T ss_dssp             -C----CCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECS
T ss_pred             -C----CCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECC
Confidence             1    3566666555443 3222211111110  0111000          00 1189999999974   455565554


Q ss_pred             CCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCee
Q 018437          211 GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (356)
Q Consensus       211 ~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g  286 (356)
                      .++.+|.+.+    +++|.++|++|      |+++|+|++|.++ .  .......+..-...|.++++  |.++++.+.|
T Consensus       209 ~~~~~g~~~~~~~~l~~l~~l~~~~------~~lli~DEv~~g~-r--~g~~~~~~~~~~~pdi~t~s--K~~~~G~~~G  277 (429)
T 4e77_A          209 VAGNMNCIPPLPEFLPGLRALCDEF------GALLIIDEVMTGF-R--VALAGAQDYYHVIPDLTCLG--KIIGGGMPVG  277 (429)
T ss_dssp             SBCTTSCBCCCTTHHHHHHHHHHHH------TCEEEEEETTTBT-T--TBTTCHHHHTTCCCSEEEEE--GGGGTTSCCE
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCc-c--cCcchHHHhcCCCCCeeeec--ccccCCCCeE
Confidence            4455667777    99999999999      9999999999865 2  11111111111134666544  9887777889


Q ss_pred             EEEEeC
Q 018437          287 WVVWRT  292 (356)
Q Consensus       287 ~l~~~~  292 (356)
                      +++.++
T Consensus       278 ~~~~~~  283 (429)
T 4e77_A          278 AFGGRR  283 (429)
T ss_dssp             EEEECH
T ss_pred             EEEECH
Confidence            887753

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.48  E-value=3.6e-12  Score=124.02  Aligned_cols=197  Identities=14%  Similarity=0.022  Sum_probs=122.0

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+... .++.......+...++.++++++++.+.    ...+++|+||++|+..++++++...       
T Consensus        79 ~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~~----~~~v~~~~sGseA~~~Alk~a~~~~-------  146 (451)
T 3oks_A           79 APKVVEAVRSQVGDF-THTCFMVTPYEGYVAVCEQLNRLTPVRG----DKRSALFNSGSEAVENAVKIARSHT-------  146 (451)
T ss_dssp             CHHHHHHHHHHHTTC-SCCTTTTSCCHHHHHHHHHHHHHSSCCS----SEEEEEESSHHHHHHHHHHHHHHHH-------
T ss_pred             CHHHHHHHHHHHHhc-ccccCCccCCHHHHHHHHHHHHhCCcCC----CCEEEEeCcHHHHHHHHHHHHHHhc-------
Confidence            578899888877643 2222222334556678888999987432    1248999999999999998887531       


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHHhhC--------------CeeEEEEecCCccc-------------cCHHHHHHHHh-
Q 018437          149 GKPYDKPNIVTGANVQVCWEKFARYFE--------------VELKEVKLEEGYYV-------------MNPVKAVELVD-  200 (356)
Q Consensus       149 g~~~~~~~vi~s~~~h~s~~~~~~~~G--------------~~v~~v~~~~~~~~-------------~d~~~L~~~i~-  200 (356)
                      |    +++|++..++|+.+...+..++              .++..+|+... ++             -+++.+++.+. 
T Consensus       147 g----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~l~~  221 (451)
T 3oks_A          147 H----KPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYP-FRDAEFGKELATDGELAAKRAITVIDK  221 (451)
T ss_dssp             C----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCH-HHHGGGCTTTTTCHHHHHHHHHHHHHH
T ss_pred             C----CCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcc-ccccccccccchhhHHHHHHHHHHHHh
Confidence            1    4577777766554333332221              24677776521 11             13455555554 


Q ss_pred             ---hCceEEEEecCCCcc-cccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEE
Q 018437          201 ---ENTICVAAILGSTLT-GEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSIN  272 (356)
Q Consensus       201 ---~~~~~v~~~~~~~~t-G~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~  272 (356)
                         +++.+++++.|++++ |.+.+    +++|.++|++|      |+++|+|++|.++..  .......+..-...|.++
T Consensus       222 ~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~g~--~g~~~~~~~~~~~pdi~t  293 (451)
T 3oks_A          222 QIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN------DVVFIADEVQTGFAR--TGAMFACEHEGIDPDLIV  293 (451)
T ss_dssp             HTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEE
T ss_pred             hcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc------CCEEEEEecccCCCc--cccchhhhhcCCCCCeee
Confidence               244455555555555 55545    99999999999      999999999986532  111011111112356666


Q ss_pred             EcCCcCCCCCcCeeEEEEeC
Q 018437          273 VSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       273 ~~~hK~l~~P~g~g~l~~~~  292 (356)
                      ++  |.+++++.+|+++.++
T Consensus       294 ~s--K~l~~G~~iG~v~~~~  311 (451)
T 3oks_A          294 TA--KGIAGGLPLSAVTGRA  311 (451)
T ss_dssp             EC--GGGGTTSSCEEEEEEH
T ss_pred             eh--hhhhCCcceEEEEECH
Confidence            54  9887778889988764

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.45  E-value=4.5e-13  Score=128.05  Aligned_cols=194  Identities=10%  Similarity=0.001  Sum_probs=128.3

Q ss_pred             cccccccCCCChH-HHHHHHHHHh--cc--cCCCcccCcch-----HHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChh
Q 018437           58 LNLASFVTTWMEP-ECDKLVMASI--NK--NYVDMDEYPVT-----TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS  127 (356)
Q Consensus        58 ~~l~~~~~~~~~~-~v~~~i~~~~--~~--~~~~~~~~~~~-----~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt  127 (356)
                      ++|..+.+.++.+ .+.+++....  ..  ....|....+.     .++++++.+++. ..|++...  ...+++|+|++
T Consensus        25 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~--~~~i~~t~G~~  101 (391)
T 3bwn_A           25 VNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATE--DRYIVVGTGST  101 (391)
T ss_dssp             EECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCS--SSEEEEEEHHH
T ss_pred             eEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCC--CCeEEEeCChH
Confidence            4555555544333 3444432222  11  22345455566     888888888876 45665321  13589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCC----eEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCc
Q 018437          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKP----NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENT  203 (356)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~----~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~  203 (356)
                      +++.+++.++.++             ++    +|+++.|+|..+...++..|++++.+++|.+..  +        .+++
T Consensus       102 ~al~~~~~~l~~~-------------Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l--~--------~~~~  158 (391)
T 3bwn_A          102 QLCQAAVHALSSL-------------ARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGF--D--------KKGP  158 (391)
T ss_dssp             HHHHHHHHHHHHT-------------SSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEESTTC--C--------CCSC
T ss_pred             HHHHHHHHHhcCC-------------CCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHHHc--C--------CCCC
Confidence            9999999988653             45    899999999999999999999999999886422  2        2568


Q ss_pred             eEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CC
Q 018437          204 ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VY  282 (356)
Q Consensus       204 ~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P  282 (356)
                      ++|++++|+||||.+.+  +|++  +++    +.++++++|++|....   ..   .... ....+.+..|++|.++ ..
T Consensus       159 k~v~l~~p~NPtG~~~~--~l~~--~~~----~~~~~ii~De~y~~~~---~~---~l~~-~~~~~i~~~S~SK~~g~~G  223 (391)
T 3bwn_A          159 YIELVTSPNNPDGTIRE--TVVN--RPD----DDEAKVIHDFAYYWPH---YT---PITR-RQDHDIMLFTFSKITGHAG  223 (391)
T ss_dssp             EEEEEESSCTTTCCCCC--CCC-----------CCCEEEEECTTCSTT---TS---CCCC-CBCCSEEEEEHHHHHSCGG
T ss_pred             EEEEECCCCCCCchhHH--HHHH--Hhh----cCCCEEEEeCCCCCCC---CC---cccc-CCCCeEEEEechhhcCCCc
Confidence            89999999999999975  4433  225    0049999999997311   11   1111 2345677888999863 23


Q ss_pred             cCeeEEEEeC
Q 018437          283 AGVGWVVWRT  292 (356)
Q Consensus       283 ~g~g~l~~~~  292 (356)
                      ..+|++++.+
T Consensus       224 lRiG~~~~~~  233 (391)
T 3bwn_A          224 SRIGWALVKD  233 (391)
T ss_dssp             GCEEEEEECC
T ss_pred             cceEEEEecC
Confidence            4569998744

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.40  E-value=8.3e-12  Score=120.25  Aligned_cols=186  Identities=13%  Similarity=-0.032  Sum_probs=118.7

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.... .+   .....++.++.++++++++ +.     ..+++|+||++|+..++.+++...      
T Consensus        69 ~~p~v~~a~~~~~~~~~-~~---~~~~~~~~~l~~~l~~~~~-~~-----~~v~~~~~g~ea~~~al~~ar~~~------  132 (424)
T 2e7u_A           69 AHPKVLARVRETLERGL-TF---GAPSPLEVALAKKVKRAYP-FV-----DLVRFVNSGTEATMSALRLARGYT------  132 (424)
T ss_dssp             TCHHHHHHHHHHHHTCS-CC---SSCCHHHHHHHHHHHHHCT-TC-----CEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHhh------
Confidence            45788898888776421 11   1233456677888898885 32     248899999999999998765321      


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHH-Hh-------------hCC------eeEEEEecCCccccCHHHHHHHHhh---Cce
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFA-RY-------------FEV------ELKEVKLEEGYYVMNPVKAVELVDE---NTI  204 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~-~~-------------~G~------~v~~v~~~~~~~~~d~~~L~~~i~~---~~~  204 (356)
                           .++.||+.+++|+.+...+ ..             .|+      .+..+|.      .|+++|++++++   +++
T Consensus       133 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~  201 (424)
T 2e7u_A          133 -----GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY------NDPEGLREVLKRRGEEIA  201 (424)
T ss_dssp             -----CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT------TCHHHHHHHHHHHGGGEE
T ss_pred             -----CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC------CCHHHHHHHHHhCCCCEE
Confidence                 1356777777665433221 11             122      2333332      389999999973   455


Q ss_pred             EEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC
Q 018437          205 CVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (356)
Q Consensus       205 ~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~  280 (356)
                      +|+++..++++|.+.|    +++|.++ ++|      |+++++|++|+++ .  .......+..-...|.+  +..|+++
T Consensus       202 ~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~------g~~lI~DEv~~g~-~--~g~~~~~~~~~~~~di~--s~sK~l~  269 (424)
T 2e7u_A          202 AIIFEPVVGNAGVLVPTEDFLKALHEA-KAY------GVLLIADEVMTGF-R--LAFGGATELLGLKPDLV--TLGKILG  269 (424)
T ss_dssp             EEEECSSBCTTSCBCCCHHHHHHHHHG-GGG------TCEEEEECTTTTT-T--SSTTHHHHHHTCCCSEE--EECGGGG
T ss_pred             EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHc------CCEEEEecCcccc-c--cchhHHHHHhCCCcchh--hhhhhhh
Confidence            5555444444898877    9999999 999      9999999999865 2  11100111111135655  4569987


Q ss_pred             CCcCeeEEEEeC
Q 018437          281 VYAGVGWVVWRT  292 (356)
Q Consensus       281 ~P~g~g~l~~~~  292 (356)
                      ++..+|+++.++
T Consensus       270 ~G~~~G~~~~~~  281 (424)
T 2e7u_A          270 GGLPAAAYAGRR  281 (424)
T ss_dssp             TTSSCEEEEECH
T ss_pred             CCcceEEEEEcH
Confidence            767789998764

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.32  E-value=3e-11  Score=118.29  Aligned_cols=171  Identities=12%  Similarity=-0.018  Sum_probs=108.5

Q ss_pred             ChHHHHHHHHHHhcc----cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~----~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (356)
                      .+|.+.+++.+.+..    +...+.. ....++++++.+.++++++.+.     ..+.+++||+|||..|+.+++..+..
T Consensus        80 ~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~~~-----~~v~f~~sGseA~~~Aik~a~~~~~~  153 (472)
T 1ohv_A           80 SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPKGM-----SQLITMACGSCSNENAFKTIFMWYRS  153 (472)
T ss_dssp             TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCTTC-----CEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCCCc-----CEEEEeCCchhHHHHHHHHHHHHhhh
Confidence            367888888766532    1111111 2235667777666777664332     24899999999999999998765321


Q ss_pred             H-HH-------------hcCCCCC-CCeEEecCCCcch-HHHHHHhhCC--------e---eEEEEecCCcc--------
Q 018437          144 K-RK-------------EQGKPYD-KPNIVTGANVQVC-WEKFARYFEV--------E---LKEVKLEEGYY--------  188 (356)
Q Consensus       144 ~-~~-------------~~g~~~~-~~~vi~s~~~h~s-~~~~~~~~G~--------~---v~~v~~~~~~~--------  188 (356)
                      + +.             ..+.+.. +++||+.+..|+. ...++...|.        .   +..+++....+        
T Consensus       154 ~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  233 (472)
T 1ohv_A          154 KERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKE  233 (472)
T ss_dssp             HHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHH
T ss_pred             hccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCcccccccc
Confidence            1 10             0000111 3678777765544 3333333332        1   12233321001        


Q ss_pred             -----ccCHHHHHHHHhh------CceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccc
Q 018437          189 -----VMNPVKAVELVDE------NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (356)
Q Consensus       189 -----~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~  250 (356)
                           ..|+++|+++|++      ++++|++...++++|.+.|    +++|.++|++|      |+++|+|++|.++
T Consensus       234 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~------g~lli~DEv~~g~  304 (472)
T 1ohv_A          234 NQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH------GCAFLVDEVQTGG  304 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT------TCEEEEECTTTTT
T ss_pred             chhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHh------CCEEEEeCcccCC
Confidence                 2378999999986      7888888887888998877    99999999999      9999999999863

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.31  E-value=3e-12  Score=123.85  Aligned_cols=192  Identities=13%  Similarity=0.096  Sum_probs=132.5

Q ss_pred             ccccccCCCCh-HHHHHHHHHHhc-ccCC--CcccCc-c---hHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHH
Q 018437           59 NLASFVTTWME-PECDKLVMASIN-KNYV--DMDEYP-V---TTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        59 ~l~~~~~~~~~-~~v~~~i~~~~~-~~~~--~~~~~~-~---~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (356)
                      +|..+.+..++ +.+.+++.+++. .+..  .|.... +   ..++++++.+++.+..+...+   ...+++|+|+++++
T Consensus        60 ~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~---~~~iv~t~G~~~al  136 (427)
T 2hox_A           60 DVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAK---DRYIVFGVGVTQLI  136 (427)
T ss_dssp             ECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCT---TCEEEEESHHHHHH
T ss_pred             EecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCC---CCEEEEeCCHHHHH
Confidence            44444443333 466777777663 2221  244444 5   688888888888876553321   13589999999999


Q ss_pred             HHHHHHH--------HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhC
Q 018437          131 MLAGLAF--------KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN  202 (356)
Q Consensus       131 ~~al~~~--------~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~  202 (356)
                      .+++.++        .++             +++|+++.++|..+...++..|++++.       +.+|+++|+++++++
T Consensus       137 ~~~~~~l~~~~~~~~~~~-------------Gd~Vlv~~P~y~~~~~~~~~~g~~~~~-------~~~d~~~l~~~~~~~  196 (427)
T 2hox_A          137 HGLVISLSPNMTATPDAP-------------ESKVVAHAPFYPVFREQTKYFDKKGYV-------WAGNAANYVNVSNPE  196 (427)
T ss_dssp             HHHHHHHSCCTTTCTTSC-------------CEEEEECSSCCHHHHHHHHHSCBTTEE-------EEEEGGGGTTCSCGG
T ss_pred             HHHHHHHhhccccccCCC-------------CCEEEEeCCCcccHHHHHHHcCCeeee-------ecCCHHHHHHhhcCC
Confidence            9998887        332             579999999999999999999998763       456778888888888


Q ss_pred             ceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC
Q 018437          203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY  282 (356)
Q Consensus       203 ~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P  282 (356)
                      +++|++++|+||||.+.+ +    ++  .      ++..++|.++..   ++..   ...+. ...+.+..|++|.++.|
T Consensus       197 ~k~v~l~~p~NPtG~~~~-~----~l--~------~~~~i~d~~~~~---~~~s---~~~~~-~~~~i~~~S~SK~~g~~  256 (427)
T 2hox_A          197 QYIEMVTSPNNPEGLLRH-A----VI--K------GCKSIYDMVYYW---PHYT---PIKYK-ADEDILLFTMSKFTGHS  256 (427)
T ss_dssp             GEEEEEESSCTTTCCCCC-C----SS--T------TCEEEEECTTCS---TTTS---CCCSC-BCCSEEEEEHHHHTSCG
T ss_pred             ceEEEEcCCCCCcccccH-H----HH--c------CCCEEEeecccC---CCCC---ccccC-CCceEEEEeChhcCCCC
Confidence            899999999999999988 4    23  2      456788877632   1111   01111 35688899999987422


Q ss_pred             -cCeeEEEEeCC
Q 018437          283 -AGVGWVVWRTK  293 (356)
Q Consensus       283 -~g~g~l~~~~~  293 (356)
                       ..+|+++.+++
T Consensus       257 G~RiG~~~~~~~  268 (427)
T 2hox_A          257 GSRFGWALIKDE  268 (427)
T ss_dssp             GGCCEEEEECCH
T ss_pred             CceEEEEEECCH
Confidence             34899988543

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=98.77  E-value=3.3e-12  Score=124.57  Aligned_cols=187  Identities=12%  Similarity=-0.071  Sum_probs=117.3

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      .+|.+.+++.+.+.......    .....+.++.+.++++++ .+       ...++++|++|+..++.+++...     
T Consensus       117 ~~p~V~~Av~~q~~~~~~~~----~~~~~~~~Lae~L~~~~p~~~-------~v~~~nSGseA~~~Aik~ar~~t-----  180 (465)
T 2yky_A          117 SHPVIRAAVERALAVGLNLS----TQTENEALFAEAVCDRFPSID-------LVRFTNSGTEANLMALATATAIT-----  180 (465)
Confidence            35778888877665421111    123345566677888874 33       27899999999999999876421     


Q ss_pred             hcCCCCCCCeEEecCCCcchHHH-HH---HhhCCeeEEEEecCCccccCHHHHHHHHh---hCceEEEEecCCCcccccC
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEK-FA---RYFEVELKEVKLEEGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEFE  219 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~-~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~~  219 (356)
                            .+++||+.+..+..... ++   ...|+....++++   + -|+++|+++++   +++++|++....+++|.+.
T Consensus       181 ------gr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~---~-~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~  250 (465)
T 2yky_A          181 ------GRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGV---Y-NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVP  250 (465)
Confidence                  13567777665543222 22   1123311222222   1 27889999997   5777887776566689776


Q ss_pred             C----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          220 D----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       220 ~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      +    +++|.++|+++      |+++++|++|. +-.   ......+..-...|.++  ..|+++++..+|+++.++
T Consensus       251 ~~~~~l~~l~~l~~~~------g~llI~DEv~~-~r~---g~~~a~~~~gv~pDi~t--~sK~lg~G~piG~v~~~~  315 (465)
T 2yky_A          251 AERAFLDLLRAEASRC------GALLIFDEVMT-SRL---SGGGAQEMLGISADLTT--LGKYIGGGMSFGAFGGRR  315 (465)
Confidence            5    99999999999      99999999998 522   11001111101246554  569987767788887764

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.03  E-value=1.3e-08  Score=98.67  Aligned_cols=189  Identities=16%  Similarity=0.045  Sum_probs=114.9

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+..........    .++.++.+.+++++..-      ..+.++++|||||..|++.++...     
T Consensus       103 H~hp~v~~Av~~q~~~~~~~~~~~----~~~~~lae~l~~~~p~~------~~v~f~~SGsEA~e~AiklAr~~t-----  167 (454)
T 4ao9_A          103 HSAPEIRDAVIEAMQGGINLTGHN----LLEGRLARLICERFPQI------EQLRFTNSGTEANLMALTAALHFT-----  167 (454)
T ss_dssp             SCCHHHHHHHHHHHHTCSCCCSEE----SSHHHHHHHHHHHSTTC------SEEEEESSHHHHHHHHHHHHHHHH-----
T ss_pred             CCCHHHHHHHHHHHhcCCCccCCc----HHHHHHHHHHHHhCCCC------CEEEEeCchHHHHHHHHHHHHhcc-----
Confidence            345889999888776432221111    23445566677776421      237899999999999999998752     


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHHhh---CCeeEEEEecCCccccCHHHHHHHHhh---CceEEEEecCCCcccccC
Q 018437          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFE  219 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~-~~h~s~~~~~~~~---G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~  219 (356)
                        |    +.+|+... ..|-.........   +.....+.+..+    |++.+++.+++   ++.+|++--.....|.+.
T Consensus       168 --g----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n----d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~  237 (454)
T 4ao9_A          168 --G----RRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN----DAQTARAQIERHGPEIAVVLVEPMQGASGCIP  237 (454)
T ss_dssp             --T----CCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT----CHHHHHHHHHHTGGGEEEEEECSEESTTTCEE
T ss_pred             --c----CCeEEEEeCCcCCccccccccccCccCCCCcccCCCc----hHHHHHHHHhhcCCceEEEEeccccCCCCccC
Confidence              1    35565544 3443221111110   111222222222    78889988874   456777666566667776


Q ss_pred             C----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          220 D----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       220 ~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      |    +++|.++|++|      |++||+|+++.|-.-.+.. ...+.+   ..|.+++  .|.+++....|.++.++
T Consensus       238 p~~~fL~~lr~lc~~~------g~lLI~DEV~tGR~G~~~a-~e~~gv---~PDi~t~--gK~lggG~Piga~~~~~  302 (454)
T 4ao9_A          238 GQPDFLQALRESATQV------GALLVFDEVMTSRLAPHGL-ANKLGI---RSDLTTL--GKYIGGGMSFGAFGGRA  302 (454)
T ss_dssp             CCHHHHHHHHHHHHHH------TCEEEEECTTGGGGSTTCH-HHHHTC---CCSEEEE--EGGGGTTSSCEEEEECH
T ss_pred             CchhhHHHHHHHHhhc------CCEEEEECCCcCCCccccc-hhccCC---CCcEEEe--ccccCCCCcceeeeeHH
Confidence            6    89999999999      9999999999752211100 001111   3477764  47777767788888765

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=98.78  E-value=4.7e-07  Score=88.27  Aligned_cols=206  Identities=14%  Similarity=-0.076  Sum_probs=117.8

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++........+....+.+.++.+.|.++...+.     ..+.++++||||+..|++.++..+..   
T Consensus        83 h~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-----~~v~f~~sGsEA~e~AiKlAr~~~~~---  154 (473)
T 4e3q_A           83 FDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDS-----GRVFYTNSGSEANDTMVKMLWFLHAA---  154 (473)
T ss_dssp             SCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSS-----CEEEEESSHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCc-----cEEEEeCchHHHHHHHHHHHHHHHHh---
Confidence            3458888888877664332211222223334467778888876543     24789999999999999999876543   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhC-----------CeeEEEEecC-----Ccccc-------CHHHHHHHHhh-
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE-----------VELKEVKLEE-----GYYVM-------NPVKAVELVDE-  201 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G-----------~~v~~v~~~~-----~~~~~-------d~~~L~~~i~~-  201 (356)
                       +|.. .+.+||.-.. .|-...-++...|           -.+..++...     ..+..       ..+++++.+.+ 
T Consensus       155 -~g~~-~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  232 (473)
T 4e3q_A          155 -EGKP-QKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQRE  232 (473)
T ss_dssp             -TTCT-TCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCCC-CcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhh
Confidence             2222 1345655444 4443333333222           1244444321     00111       12345555542 


Q ss_pred             ---CceEEEEecCCCcccccC----CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEc
Q 018437          202 ---NTICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (356)
Q Consensus       202 ---~~~~v~~~~~~~~tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~  274 (356)
                         ++.+|++--....-|.+.    -+++|.++|++|      |++||+|+++.|+..  ...-...+..--..|.++++
T Consensus       233 ~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~------gilLI~DEV~tGfGR--tG~~fa~e~~gv~PDi~t~~  304 (473)
T 4e3q_A          233 GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY------DIPVISDEVICGFGR--TGNTWGCVTYDFTPDAIISS  304 (473)
T ss_dssp             CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCCEEEECTTTSSST--TSSSCHHHHTTCCCSEEEEC
T ss_pred             CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc------ceEEeccCccccCCc--ccchhHHHhcCCCCChHHhc
Confidence               345666655555556653    389999999999      999999999987533  11100111111136777754


Q ss_pred             CCcCCCCC-cCeeEEEEeC
Q 018437          275 GHKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       275 ~hK~l~~P-~g~g~l~~~~  292 (356)
                        |.+.+. ...|.++.++
T Consensus       305 --K~l~gG~~Pl~av~~~~  321 (473)
T 4e3q_A          305 --KNLTAGFFPMGAVILGP  321 (473)
T ss_dssp             --GGGGTTSSCCEEEEECH
T ss_pred             --ccccCCCCCcccccccH
Confidence              766555 6778888865

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=98.72  E-value=2.4e-06  Score=82.89  Aligned_cols=200  Identities=12%  Similarity=-0.054  Sum_probs=115.0

Q ss_pred             CChHHHHHHHHHHhcccCCC-cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +.+|.+.+++.+.+...... ....+  .+.+.++.+.+.+++..+.    .....++++||||+..|++.++...    
T Consensus        80 h~~p~v~~Ai~~q~~~~~~~~~~~~~--~~~~~~lae~L~~~~p~~~----~~~v~f~~sGsEA~e~AlklAr~~t----  149 (456)
T 4atq_A           80 ASDPAVVAAVQEAAAHFTHTCFMVTP--YEGYVAVTEQLNRLTPGDH----AKRTVLFNSGAEAVENAVKVARLAT----  149 (456)
T ss_dssp             TTCHHHHHHHHHHHHHCSCCTTTTSC--CHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHHH----
T ss_pred             CCCHHHHHHHHHHHhhccCcccCccC--cHHHHHHHHHHHHhCCCCC----CcEEEEeCChHHHHHHHHHHHhhhh----
Confidence            34588888887766542211 11111  1233356677888875432    1236789999999999999998652    


Q ss_pred             HhcCCCCCCCeEEecCCC-cchHHHHHHhhC-------------CeeEEEEecCC-----ccccCHHHHHHHHh------
Q 018437          146 KEQGKPYDKPNIVTGANV-QVCWEKFARYFE-------------VELKEVKLEEG-----YYVMNPVKAVELVD------  200 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~-h~s~~~~~~~~G-------------~~v~~v~~~~~-----~~~~d~~~L~~~i~------  200 (356)
                         |    +.+|+.-..+ |-...-+....+             -.+..+|....     ...-+.+.+++.++      
T Consensus       150 ---~----r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  222 (456)
T 4atq_A          150 ---G----RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQI  222 (456)
T ss_dssp             ---C----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHT
T ss_pred             ---c----CCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhh
Confidence               1    4566655444 433322222211             23566665310     01123344433332      


Q ss_pred             -h-CceEEEEecCCCcccccC----CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEc
Q 018437          201 -E-NTICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (356)
Q Consensus       201 -~-~~~~v~~~~~~~~tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~  274 (356)
                       . ++.+|++--.....|.+.    -+++|.++|++|      |++||+|+++.|+...  ..-..++..--..|.++++
T Consensus       223 ~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~------gillI~DEV~tG~GRt--G~~~a~e~~gv~PDivt~g  294 (456)
T 4atq_A          223 GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK------GIVFIADEVQSGFCRT--GEWFAVDHEGVVPDIITMA  294 (456)
T ss_dssp             CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTTT--SSSSGGGGTTCCCSEEEEC
T ss_pred             cCCceEEEEeccccCCCCccccchhhhHHHHHHHhhc------CCceEecccccccCCc--cccccccccCCCCchhhhh
Confidence             2 456666655555556653    389999999999      9999999999875331  1100111111136888865


Q ss_pred             CCcCCCCCcCeeEEEEeCC
Q 018437          275 GHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       275 ~hK~l~~P~g~g~l~~~~~  293 (356)
                        |.+++....|.++.+++
T Consensus       295 --K~lggg~P~~av~~~~~  311 (456)
T 4atq_A          295 --KGIAGGLPLSAITGRAD  311 (456)
T ss_dssp             --GGGGTTSSCEEEEEEHH
T ss_pred             --hcccCcCCceeeEecHH
Confidence              76666677888888753

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=98.34  E-value=2.3e-05  Score=81.56  Aligned_cols=205  Identities=10%  Similarity=-0.084  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhc
Q 018437           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (356)
                      +|.+.+++.+.+..-.+.... ....+-..++.+.++++++-+.    ...+.++++|++||..|+..+++.+...   .
T Consensus       399 ~p~i~~Ai~~Q~~~l~h~~~~-~~~~~~~~~Lae~L~~~~p~~~----l~~vff~~SGSeA~E~AlK~A~r~~~~~---~  470 (831)
T 4a0g_A          399 QAELAREMGYTAARFGHVMFP-ENVYEPALKCAELLLDGVGKGW----ASRVYFSDNGSTAIEIALKMAFRKFCVD---H  470 (831)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCT-TEECHHHHHHHHHHHHTTTTTT----CCEEEEESSHHHHHHHHHHHHHHHHHHT---T
T ss_pred             CHHHHHHHHHHHhhccccccc-ccCCHHHHHHHHHHHHhCCCCC----CCEEEECCChhHHHHHHHHHHHHHHHhh---c
Confidence            577888887665542221111 1112223356677888876331    1237999999999999999985432211   1


Q ss_pred             CCCC-------CCCeEEec-CCCcchHHHHHHhhCCe----------------------------eEEEEecCCccc---
Q 018437          149 GKPY-------DKPNIVTG-ANVQVCWEKFARYFEVE----------------------------LKEVKLEEGYYV---  189 (356)
Q Consensus       149 g~~~-------~~~~vi~s-~~~h~s~~~~~~~~G~~----------------------------v~~v~~~~~~~~---  189 (356)
                      |...       .+.+||.- ...|-...-++...|..                            +..+++... ++   
T Consensus       471 g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~-~~~~~  549 (831)
T 4a0g_A          471 NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES-FSEIA  549 (831)
T ss_dssp             TC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTT-SCCCC
T ss_pred             CCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCcc-ccccc
Confidence            2110       13456654 44555555444443311                            112332210 00   


Q ss_pred             ------cC------------------HHHHHHHHhh--------CceEEEEecC-CCcccccCC----HHHHHHHHHHhh
Q 018437          190 ------MN------------------PVKAVELVDE--------NTICVAAILG-STLTGEFED----VKLLHDLLTKKN  232 (356)
Q Consensus       190 ------~d------------------~~~L~~~i~~--------~~~~v~~~~~-~~~tG~~~~----i~~I~~i~~~~~  232 (356)
                            -|                  .++|++.|++        ++.+|++--. ....|.+.+    +++|.++|++| 
T Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~-  628 (831)
T 4a0g_A          550 PEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNR-  628 (831)
T ss_dssp             SSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHT-
T ss_pred             cccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHc-
Confidence                  01                  2567777752        2344544432 456566643    89999999999 


Q ss_pred             hccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-cCeeEEEEeC
Q 018437          233 EETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWVVWRT  292 (356)
Q Consensus       233 ~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~  292 (356)
                           |+++|+|+++.|+..  ..........--..|.++  .-|.+.+. ...|+++.++
T Consensus       629 -----gilLI~DEV~tGfGR--tG~~fa~e~~gv~PDiit--lsK~L~gG~~Plgav~~~~  680 (831)
T 4a0g_A          629 -----KIPVIFDEVFTGFWR--LGVETTTELLGCKPDIAC--FAKLLTGGMVPLAVTLATD  680 (831)
T ss_dssp             -----TCCEEEECTTTTTTT--TSBSSTHHHHSSCCSEEE--ECGGGGTTSSCCEEEEECH
T ss_pred             -----CCeEEEEcCcccccc--CCCchhhHhcCCCCcEEE--EecccccCccCcEEEEECH
Confidence                 999999999887533  111001111011357776  45877654 3668888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	1e-111
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	6e-23
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	2e-22
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	8e-11

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score =  329 bits (843), Expect = e-111
 Identities = 163/330 (49%), Positives = 223/330 (67%), Gaps = 1/330 (0%)

Query: 11  REILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEP 70
            E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW + 
Sbjct: 9   SELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDE 68

Query: 71  ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130
              KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA 
Sbjct: 69  NVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEAC 128

Query: 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVM 190
           ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   M
Sbjct: 129 MLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFM 187

Query: 191 NPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF 250
           +P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF
Sbjct: 188 DPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 247

Query: 251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD 310
           +APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG  
Sbjct: 248 LAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ 307

Query: 311 QPTFTLNFSKGSSQIIAQYYQFIRLGFEEI 340
             TF +NFS+ + Q+IAQYY+F+RLG E  
Sbjct: 308 IGTFAINFSRPAGQVIAQYYEFLRLGREGY 337

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 97.2 bits (241), Expect = 6e-23
 Identities = 63/341 (18%), Positives = 111/341 (32%), Gaps = 54/341 (15%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECD-------- 73
           Y+R  IP    P      E   Q +   +M            VT W  P           
Sbjct: 37  YLRPLIP-ATAPQEPDTFEDILQDVEKIIM----------PGVTHWHSPYFFAYFPTASS 85

Query: 74  ------KLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV----GVGT 123
                  ++  +I          P  TEL+   ++ +  +   P A          GV  
Sbjct: 86  YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145

Query: 124 VGSSEAIMLAGLAFKRKWQQKRKE------QGKPYDKPNIVTGANVQVCWEKFARYFEVE 177
             +SEA ++A LA + K  ++ +       QG   +K             E+      V+
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205

Query: 178 LKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231
           LK +   +G + M      E ++ +         V A LG+T    F+++  +  +  + 
Sbjct: 206 LKAIP-SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE- 263

Query: 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR 291
                 D  +HVDAA  G            +  +    S N + HK+ LV      +  +
Sbjct: 264 -----EDIWLHVDAAYAGSAFICPEFRHLLNG-VEFADSFNFNPHKWLLVNFDCSAMWVK 317

Query: 292 TKDDLP-----DELVFHINYLGSDQPTFTLNFSKGSSQIIA 327
            + DL      D +    ++ GS   T   ++     +   
Sbjct: 318 RRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFR 358

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.8 bits (237), Expect = 2e-22
 Identities = 39/330 (11%), Positives = 93/330 (28%), Gaps = 39/330 (11%)

Query: 21  RYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASF------VTTWMEPECDK 74
             +R  + + K P++   +      +++  ++D N  L           V + +      
Sbjct: 8   HLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHY 67

Query: 75  LVMASINKNYVDMDEYP------VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128
             +  I ++       P      +  ++ N  V  +  L          A       ++ 
Sbjct: 68  RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVH----SVASCFVVPMATG 123

Query: 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK--LEEG 186
             +       R  + K K          I+     Q    K       E   ++  LE  
Sbjct: 124 MSLTLCFLTLRHKRPKAKY---------IIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD 174

Query: 187 YYVMNPVKAVE----LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242
               +          L  E+ +C+ +          + ++ L  +         +D P  
Sbjct: 175 ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICAN------YDIPHV 228

Query: 243 VDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF 302
           V+ A G   +  ++  ++   R+  + +   S  K  +V  G   +     +    ++  
Sbjct: 229 VNNAYGLQSSKCMHL-IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGF-NEPFIQDISK 286

Query: 303 HINYLGSDQPTFTLNFSKGSSQIIAQYYQF 332
                 S  P+  +  +  S          
Sbjct: 287 MYPGRASASPSLDVLITLLSLGCSGYRKLL 316

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 60.7 bits (146), Expect = 8e-11
 Identities = 38/315 (12%), Positives = 83/315 (26%), Gaps = 45/315 (14%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           ++    E     +L+     + +       K+P+N +  E     +    M+D +     
Sbjct: 9   LIPKNMEKRGELVLNEYL--KEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKS 66

Query: 61  AS--------FVTTWMEPECDKLVMASINKNYVDMDEY----PVTTELQNRCVNMIAHLF 108
                     +     E           + N VD         +   L N+ +       
Sbjct: 67  VRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQL 126

Query: 109 NTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE 168
              V        + T  S+   +   L+  RK                ++          
Sbjct: 127 GLNVH------AIATPISTGMSISLCLSAARKKYGSNV----------VIYPYASHKSPI 170

Query: 169 KFARYFEVELKEVK--LEEGYYVMNPVKAVELVDE-----NTICVAAILGSTLTGEFEDV 221
           K   +  + ++ V+  L+     +        + +     N  CV + L        +D+
Sbjct: 171 KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDI 230

Query: 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV 281
             +  +    +       P  ++ A         Y +         V ++  S  K  L 
Sbjct: 231 VEIAKICENYD------IPHIINGAYAIQNN--YYLEKLKKAFKYRVDAVVSSSDKNLLT 282

Query: 282 YAGVGWVVWRTKDDL 296
             G G V     + +
Sbjct: 283 PIGGGLVYSTDAEFI 297

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	100.0
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	100.0
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	100.0
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.97
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.95
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.95
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.94
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.94
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.93
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.93
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.88
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.87
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.86
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.85
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.84
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.84
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.84
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.83
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.82
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.81
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.81
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.81
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.81
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.8
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.78
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.78
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.78
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.77
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.76
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.76
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.76
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.75
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.74
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.74
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.74
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.72
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.72
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.68
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.67
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.67
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.66
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.63
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.63
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.63
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.62
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.62
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.6
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.59
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.59
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.59
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.57
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.56
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.55
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.53
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.53
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.52
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.52
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.51
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.5
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.5
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.5
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.48
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.48
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.46
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.46
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.45
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.45
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.43
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.42
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.41
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.37
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.34
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.33
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.32
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.29
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.26
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.16
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.12
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	98.83
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	98.78
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	98.76
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	98.55
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	98.52
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.47
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.32
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	97.85

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-57  Score=440.10  Aligned_cols=343  Identities=48%  Similarity=0.862  Sum_probs=313.2

Q ss_pred             ccccccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhcccCCCcccCc
Q 018437           12 EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYP   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~   91 (356)
                      +.+++.|++.......++.++|+.+++++++.+.+++.+.++|+|+.|+.+|++++++|.+.+++.+++|.|..+++.+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~d~l~~dg~~~~n~asf~~t~~~~~~~~l~~~~~~~N~~~~~~~P   89 (450)
T d1pmma_          10 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYP   89 (450)
T ss_dssp             HHHCCTTTSGGGSSCCCCSSCCCSCCCHHHHHHHHHHHGGGSCCGGGBCSCCSCCCCCHHHHHHHHHTTTCBTTCTTTSH
T ss_pred             hhhccchhhhhhccccccccCCccCCCHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHhcCCCCcccCc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH
Q 018437           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA  171 (356)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~  171 (356)
                      .+.++|.++.+|+++++|++........|++|+|||+||++|++++|++|..+++..|..... .++++..+|+|+.+++
T Consensus        90 ~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~-~~~~~~~~H~s~~Kaa  168 (450)
T d1pmma_          90 QSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDK-PNLVCGPVQICWHKFA  168 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSC-CEEEESSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCC-ceEEecccHHHHHHHH
Confidence            999999999999999999986443456799999999999999999999998887766655433 4666788999999999


Q ss_pred             HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccccccc
Q 018437          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (356)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~  251 (356)
                      +++|++++.||+++++++||+++|+++++++|++|++++++|.||++||+++|.++|+++...++.++|+|||||+||++
T Consensus       169 ~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~  248 (450)
T d1pmma_         169 RYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL  248 (450)
T ss_dssp             HHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred             HHcCCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccce
Confidence            99999999999987679999999999999999999999999999999999999999887655555699999999999999


Q ss_pred             ccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHH
Q 018437          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQ  331 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~  331 (356)
                      +||..+...+++.++++||+++|+|||+++|+|||++++|++..+...+...+.|+++...++++++||++..++++|+.
T Consensus       249 ~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~  328 (450)
T d1pmma_         249 APFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYE  328 (450)
T ss_dssp             HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHH
T ss_pred             eeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHH
Confidence            99888887888889999999999999999999999999999877766666778899887777889999999889999999


Q ss_pred             HHHhCHHHHHHHHHHHHhccCccc
Q 018437          332 FIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       332 l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ++.+|.+|+++++++++++|+||+
T Consensus       329 l~~~G~~G~~~~~~~~~~la~~l~  352 (450)
T d1pmma_         329 FLRLGREGYTKVQNASYQVAAYLA  352 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999985

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.1e-48  Score=381.64  Aligned_cols=327  Identities=18%  Similarity=0.222  Sum_probs=263.8

Q ss_pred             ccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhh----hcCCCCcccccccCCC-Ch-HHHHHHHHHHhcccCCCccc
Q 018437           16 STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTW-ME-PECDKLVMASINKNYVDMDE   89 (356)
Q Consensus        16 ~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~----~~~~~~~~l~~~~~~~-~~-~~v~~~i~~~~~~~~~~~~~   89 (356)
                      +...+.++...++. ++|+.|.+.+++++++.+.+.    .+.||+|  .++.++. .+ ..+.+.+..++|+|...+..
T Consensus        31 ~~~~p~~l~~~~~~-~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f--~~~~~~~~~~~~~l~~~~~~~~n~n~~~~~~  107 (476)
T d1js3a_          31 PDVQPGYLRPLIPA-TAPQEPDTFEDILQDVEKIIMPGVTHWHSPYF--FAYFPTASSYPAMLADMLCGAIGCIGFSWAA  107 (476)
T ss_dssp             CCCCTTCSGGGSCS-SCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSSGGG
T ss_pred             CCCChHHHHHhcCc-ccCcCCCCHHHHHHHHHHHHhCCCCCCCCCCe--eEeCCCCCCHHHHHHHHHHHhhcccccchhh
Confidence            33445556667765 889999999999999988775    3568887  3444433 33 47788999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCC----CCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCC------CCCeEEe
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVAD----DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPNIVT  159 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~----~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~------~~~~vi~  159 (356)
                      +|...++|.++.+|+++++|++.+.    ....+|++|+|||+||+++++++|+++.++.+..+...      .+..|++
T Consensus       108 sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~  187 (476)
T d1js3a_         108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA  187 (476)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEe
Confidence            9999999999999999999998532    12356899999999999999999988665543332211      1347899


Q ss_pred             cCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhC------ceEEEEecCCCcccccCCHHHHHHHHHHhhh
Q 018437          160 GANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNE  233 (356)
Q Consensus       160 s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~  233 (356)
                      |+.+|+|+.+++.++|++++.||+|++ ++||+++|+++|+++      |.+|+.++|+|.+|.+||+++|+++|++|  
T Consensus       188 s~~~H~Si~ka~~~lGl~~~~v~~d~~-~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~--  264 (476)
T d1js3a_         188 SDQAHSSVERAGLIGGVKLKAIPSDGK-FAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEE--  264 (476)
T ss_dssp             ETTCCHHHHHHHHHHTCEEEEECCCTT-SCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT--
T ss_pred             cccccHHHHHHHHhcCceEEEeccCCC-CCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhc--
Confidence            999999999999999999999999875 999999999999763      57899999999999999999999999999  


Q ss_pred             ccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCC--
Q 018437          234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD--  310 (356)
Q Consensus       234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~--  310 (356)
                          ++|+||||||||+..+  .++.+..+. ++++||+++|+|||+++|++||++++|++..+...+.....|+...  
T Consensus       265 ----~~wlHVDAA~Gg~~~~--~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~  338 (476)
T d1js3a_         265 ----DIWLHVDAAYAGSAFI--CPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQ  338 (476)
T ss_dssp             ----TCEEEEECTTGGGGGG--STTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC-----------
T ss_pred             ----CcEEEEecccchhhhh--hcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccc
Confidence                9999999999998874  444444444 6789999999999999999999999998655433333334444321  


Q ss_pred             -------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          311 -------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       311 -------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                             ..++++++||++. ++++|.+|+.+|.+|+++++++++++|+||+
T Consensus       339 ~~~~~~~~~~~~~~~sr~~~-al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~  389 (476)
T d1js3a_         339 GSGLITDYRHWQLPLGRRFR-SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFE  389 (476)
T ss_dssp             -CCSCCCGGGSSSCSCCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccchhhH-HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence                   1235788999876 8899999999999999999999999999975

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6e-33  Score=268.39  Aligned_cols=295  Identities=12%  Similarity=0.009  Sum_probs=214.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhcccCC----C-------ccc--Ccch
Q 018437           27 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYV----D-------MDE--YPVT   93 (356)
Q Consensus        27 ~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~~----~-------~~~--~~~~   93 (356)
                      +++.++|+.|.++.++++.+.++..++.+...++.++..... ....+++.+....+..    .       +..  ++..
T Consensus        14 ~~~~~lP~~G~~~~~i~~~l~~~~~~d~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (445)
T d3bc8a1          14 LEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREG-RVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLL   92 (445)
T ss_dssp             HHHCCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCC-CCSCHHHHHHTTTCCSCBCC-------CCSBHHHHHH
T ss_pred             hhcCCCCcCCCCHHHHHHHHHHHHhccCCcccCcccccccCc-cccHHHHHHHHHhhccccccCcchhhhhhhhccchHH
Confidence            344589999999999999999887665443332222221111 1111223333222111    1       111  1135


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHh
Q 018437           94 TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY  173 (356)
Q Consensus        94 ~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~  173 (356)
                      ..+|.++.+|+++++|++.    ...+.+|+|||++++++++.+++.+         ...+++||+|..+|+++.+++.+
T Consensus        93 ~~le~~~~~~~~~l~g~~~----~~~~~~~~~~t~~~~~~~l~a~~~~---------~~~~~~vi~~~~~H~s~~~a~~~  159 (445)
T d3bc8a1          93 NKITNSLVLNVIKLAGVHS----VASCFVVPMATGMSLTLCFLTLRHK---------RPKAKYIIWPRIDQKSCFKSMVT  159 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTT----CCEEEEESSCHHHHHHHHHHHHHHH---------CTTCCEEEEECCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCc----ccCccccccchHHHHHHHHHHHHHh---------CCCCCEEEEcCcccHHHHHHHHH
Confidence            6899999999999999985    2458899999987776655554321         11257899999999999999999


Q ss_pred             hCCeeEEEEe--cCCccccCHHHHHHHHhh----CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEeccc
Q 018437          174 FEVELKEVKL--EEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS  247 (356)
Q Consensus       174 ~G~~v~~v~~--~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~  247 (356)
                      +|++++.|+.  +.+++.+|+++|+++|++    ++.+|++++|++++|.++|+++|+++|+++      |+|+|+|+|+
T Consensus       160 ~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~------~~~l~vD~a~  233 (445)
T d3bc8a1         160 AGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANY------DIPHVVNNAY  233 (445)
T ss_dssp             TTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHH------TCCEEEECTT
T ss_pred             cCCeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHh------CCcEEEEccc
Confidence            9999888864  334699999999999964    578999999999999999999999999999      9999999999


Q ss_pred             ccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHH
Q 018437          248 GGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIA  327 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~  327 (356)
                      +++..++. ......+...++|++++|+||++++|.|+|++++++...+. ..  .          ....++++....+.
T Consensus       234 ~~~~~~~~-~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~-~~--~----------~~~~~~~~~~~~~~  299 (445)
T d3bc8a1         234 GLQSSKCM-HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQ-DI--S----------KMYPGRASASPSLD  299 (445)
T ss_dssp             TTTCHHHH-HHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHH-HH--H----------HHSCSCBCSHHHHH
T ss_pred             hhhhhhcc-ccchhccCcCCcceEEecCccccccCCCCceeeeCChHHHH-HH--H----------HHHhhcccCcchHH
Confidence            87654321 11123334567999999999999999999999998653321 11  0          11234556667899


Q ss_pred             HHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          328 QYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       328 ~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      +|+++..+|.+|+.+..++..++++|+.
T Consensus       300 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~  327 (445)
T d3bc8a1         300 VLITLLSLGCSGYRKLLKERKEMFVYLS  327 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHH
Confidence            9999999999999999999998887763

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.97  E-value=5.9e-30  Score=246.60  Aligned_cols=289  Identities=12%  Similarity=0.072  Sum_probs=205.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhcCCCCcc-cccc--cCCCChHHHHHHHHHHhcc-----c--CCCcccC--cchHHHH
Q 018437           30 FKMPDNSMPKEAAYQVINDELMLDGNPRLN-LASF--VTTWMEPECDKLVMASINK-----N--YVDMDEY--PVTTELQ   97 (356)
Q Consensus        30 ~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~-l~~~--~~~~~~~~v~~~i~~~~~~-----~--~~~~~~~--~~~~~le   97 (356)
                      ..+|+.|+++.++++.+++...++.+...+ .+.+  ......+.+..........     +  +.++..+  .....++
T Consensus        36 ~~lP~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  115 (434)
T d2z67a1          36 RKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALT  115 (434)
T ss_dssp             CSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHHHhcCcccccccccccceecccchhHHhhcccccccccccccchhhhhhhhhhhHHHHHHH
Confidence            468999999999999999887665332221 1111  1112223333322111110     1  1112211  2346788


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCe
Q 018437           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (356)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~  177 (356)
                      .++..++.+++|.+.     ....+..|+++++..++.+.+...           ++++||+|...|+++.+++...|++
T Consensus       116 ~~~~~~~~~~~g~~~-----~~~~~~~~t~~~~~~~l~a~r~~~-----------~~~~vi~s~~~H~s~~k~~~~~g~~  179 (434)
T d2z67a1         116 NKILESFFKQLGLNV-----HAIATPISTGMSISLCLSAARKKY-----------GSNVVIYPYASHKSPIKAVSFVGMN  179 (434)
T ss_dssp             HHHHHHHHHHTTCCC-----EEEEESSCHHHHHHHHHHHHHHHH-----------CCCEEEEECCCCHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHhcCCCc-----ceeecCcHHHHHHHHHHHHHHHhh-----------cCceEEEeccCCHHHHHHHHHhCCc
Confidence            899999999999985     223344455556566666654431           1478999999999999999999999


Q ss_pred             eEEEEe--cCCccccCHHHHHHHHhh-----CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccc
Q 018437          178 LKEVKL--EEGYYVMNPVKAVELVDE-----NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (356)
Q Consensus       178 v~~v~~--~~~~~~~d~~~L~~~i~~-----~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~  250 (356)
                      ++.|++  +.+++.+|+++|+++|++     ++.+|++++|++++|.++|+++|+++|+++      |+|+|||+|+|++
T Consensus       180 ~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~------~~~l~vD~a~g~~  253 (434)
T d2z67a1         180 MRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENY------DIPHIINGAYAIQ  253 (434)
T ss_dssp             EEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHH------TCCEEEECTTTTT
T ss_pred             ceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHh------CCeEEEeccchhh
Confidence            888874  344689999999999975     578899999999999999999999999999      9999999999875


Q ss_pred             cccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHH
Q 018437          251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY  330 (356)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~  330 (356)
                      ...  .+.........++|++++++||++++|.|+|+++++++..+. ...            .+..++.+...+..+|+
T Consensus       254 ~~~--~~~~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~a  318 (434)
T d2z67a1         254 NNY--YLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIK-EIS------------LSYPGRASATPVVNTLV  318 (434)
T ss_dssp             CHH--HHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHH-HHH------------TTSCSCBCSHHHHHHHH
T ss_pred             hhh--ccccccccccCCcceEEEcCccccccCCCccccccCcHHHHH-HHH------------hhcccccccchHHHHHH
Confidence            431  111112222458999999999999999999999988754332 110            01224445556899999


Q ss_pred             HHHHhCHHHHHHHHHHHHhccCccc
Q 018437          331 QFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       331 ~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ++..+|.+|++++.++..++++|+.
T Consensus       319 ~l~~~~~~g~~~~~~~~~~~a~~l~  343 (434)
T d2z67a1         319 SLLSMGSKNYLELVKNQKNSKKLLD  343 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHH
Confidence            9999999999999999999988864

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.3e-27  Score=223.42  Aligned_cols=266  Identities=15%  Similarity=0.066  Sum_probs=199.7

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCccc-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (356)
                      |.....++.++.+.+++.+++.....++..     +....+..+++++.+++++|...+    ..+++|+|+|++++..+
T Consensus        26 ld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~----~~i~~~~~~T~~~~~~~  101 (405)
T d1jf9a_          26 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA----EELVFVRGTTEGINLVA  101 (405)
T ss_dssp             CCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCG----GGEEEESSHHHHHHHHH
T ss_pred             EeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCc----ccccccCcHHHHHHHHH
Confidence            444445567788889888877543333321     123445667899999999997642    24899999999999888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEec
Q 018437          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      .+.....         ...+++|+++..+|++    +...++..|++++.+|++++ +.+|++.++++++++|++|++++
T Consensus       102 ~~~~~~~---------~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~-g~~~~~~~~~~i~~~t~lv~~~~  171 (405)
T d1jf9a_         102 NSWGNSN---------VRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD-GTLQLETLPTLFDEKTRLLAITH  171 (405)
T ss_dssp             HHHHHHH---------CCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT-SCBCGGGHHHHCCTTEEEEEEES
T ss_pred             hcccccc---------cCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCC-CcCCHHHHHHhccCCcEEEEEec
Confidence            7654321         1225799999999988    55566677999999999975 89999999999999999999999


Q ss_pred             CCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       211 ~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      .+|.+|.+.|+++|+++||++      |+++++|++++.+..       ++++...++|++++++|||+ +|.|+|++++
T Consensus       172 v~~~tG~~~pi~~i~~~~~~~------g~~~~vD~~q~~g~~-------~id~~~~~~D~~~~s~hK~~-Gp~G~g~l~v  237 (405)
T d1jf9a_         172 VSNVLGTENPLAEMITLAHQH------GAKVLVDGAQAVMHH-------PVDVQALDCDFYVFSGHKLY-GPTGIGILYV  237 (405)
T ss_dssp             BCTTTCCBCCHHHHHHHHHHT------TCEEEEECTTTTTTS-------CCCHHHHTCSEEEEEGGGTT-SCSSCEEEEE
T ss_pred             CCCcccccCchHHhhhHHHHc------CCeeecccceecccc-------ccchhhcCCceeeccccccc-cCCCceeeee
Confidence            999999999999999999999      999999999987665       35655568999999999995 8999999999


Q ss_pred             eCCCCCccccccccCCCC------------CCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          291 RTKDDLPDELVFHINYLG------------SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +++. +.........+..            ......-..||++...++++..+++.+...|++++.++...+++++
T Consensus       238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~  312 (405)
T d1jf9a_         238 KEAL-LQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYA  312 (405)
T ss_dssp             CHHH-HTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             chhh-hcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            7641 1110000000000            0001111348999999999999999888888888888877776654

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=8.4e-26  Score=214.24  Aligned_cols=238  Identities=18%  Similarity=0.097  Sum_probs=178.7

Q ss_pred             cCCCChHHHHHHHHHHhcccC--CCccc-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNY--VDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~--~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      .+++.++.+.++|.+++....  +++..     +.....+.+++++.+++++|++++     .+++|+|+|+++..++.+
T Consensus        10 a~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~-----~I~~~~~~t~~l~~~~~~   84 (391)
T d1p3wa_          10 ATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-----EIVFTSGATESDNLAIKG   84 (391)
T ss_dssp             TCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-----GEEEESSHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC-----cEEEECCHHHHHHHHHhh
Confidence            456777899999998876432  22221     123356666889999999999973     489999999999988887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHH---hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCC
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR---YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (356)
                      +.....+         .+++|++++++|+++....+   ..|++++.+|.+++ +.+|+++++++++++|++|++++++|
T Consensus        85 ~~~~~~~---------~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~~~~~i~~~T~lv~is~~~n  154 (391)
T d1p3wa_          85 AANFYQK---------KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN-GIIDLKELEAAMRDDTILVSIMHVNN  154 (391)
T ss_dssp             HHHHHGG---------GCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHCCTTEEEEECCSBCT
T ss_pred             hhhhhcC---------CCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCC-CeEcHHHHHHhCCCCcEEEEEECCCC
Confidence            6543211         15799999999998765554   45999999999874 89999999999999999999999999


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      +||.+.|+++|+++||++      |+++++|++|+.+..       ++++...++|.+++++|||+ +|.|+|+++++++
T Consensus       155 ~tG~~~~~~~I~~~~~~~------~~~~ivD~~~~~g~~-------~~d~~~~~~D~~~~s~~k~~-g~~g~g~~~~~~~  220 (391)
T d1p3wa_         155 EIGVVQDIAAIGEMCRAR------GIIYHVDATQSVGKL-------PIDLSQLKVDLMSFSGHKIY-GPKGIGALYVRRK  220 (391)
T ss_dssp             TTCCBCCHHHHHHHHHHH------TCEEEEECTTTBTTB-------CCCTTTSCCSEEEEESTTTT-SCSSCEEEEECBT
T ss_pred             CCeeECCHHHHHHHhccC------CcEEEEeeccccCCc-------cccchhcccccccccccccc-CCCceEEEEEecc
Confidence            999999999999999999      999999999987655       35666668999999999995 8999999999875


Q ss_pred             CCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHH
Q 018437          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR  334 (356)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~  334 (356)
                      ... ..   .+.+.++........++......+++...+..
T Consensus       221 ~~~-~~---~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~  257 (391)
T d1p3wa_         221 PRV-RI---EAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI  257 (391)
T ss_dssp             TBC-CC---CCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHH
T ss_pred             hhc-cc---CCcccCCccccCcccCcchhhhhhhhhhhhhH
Confidence            321 11   22233333222223355555545554444443

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.94  E-value=8.2e-26  Score=215.83  Aligned_cols=263  Identities=17%  Similarity=0.114  Sum_probs=199.4

Q ss_pred             ccccccCCCChHHHHHHHHHHhcccCCCccc-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHH
Q 018437           59 NLASFVTTWMEPECDKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (356)
Q Consensus        59 ~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (356)
                      .|....++++++.+.+++.+++.....++..     +.....+.+++++.+++++|++.+    ..+++|++++++++++
T Consensus        25 Yld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~----~~i~~~~~tt~~~n~~  100 (408)
T d1t3ia_          25 YLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP----REIVYTRNATEAINLV  100 (408)
T ss_dssp             ECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCG----GGEEEESSHHHHHHHH
T ss_pred             EeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCc----ccEEeecchHHHHHHH
Confidence            3444455667788889888877654444321     223346667899999999999852    2478889999998887


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEe
Q 018437          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      +.......         ...+++|+++..+|++    +...++..|+.++.+|.+.+ +..|.+.|+++++++|++|+++
T Consensus       101 ~~~~~~~~---------~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~l~~~~~~~t~lv~i~  170 (408)
T d1t3ia_         101 AYSWGMNN---------LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQ-ESFDLEHFKTLLSEKTKLVTVV  170 (408)
T ss_dssp             HHHTHHHH---------CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTT-SSBCHHHHHHHCCTTEEEEEEE
T ss_pred             Hhhccccc---------cCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecccc-ccccHHHhhhccCCCceEEEEe
Confidence            76643211         1125689999999987    44555667999999999874 8999999999999999999999


Q ss_pred             cCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEE
Q 018437          210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (356)
Q Consensus       210 ~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~  289 (356)
                      +.++.+|.+.|+++|.++|+++      |+++|+|++|+.+..       ++++...++|.+++++||| ++|.|+|+++
T Consensus       171 ~~~~~tG~~~p~~~i~~~~~~~------g~~~ivDa~q~~g~~-------~id~~~~~~D~~~~s~hK~-~gp~G~g~l~  236 (408)
T d1t3ia_         171 HISNTLGCVNPAEEIAQLAHQA------GAKVLVDACQSAPHY-------PLDVQLIDCDWLVASGHKM-CAPTGIGFLY  236 (408)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHT------TCEEEEECTTTTTTS-------CCCHHHHTCSEEEEEGGGT-TSCTTCEEEE
T ss_pred             cccccccccCcHHHHhhhhhcc------Cceeeeccceecccc-------cccccccCCceEEeccccc-cCCCCccccc
Confidence            9999999999999999999999      999999999987666       3566656899999999999 4899999999


Q ss_pred             EeCCCCCccccccccCCCCCCC---------------CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          290 WRTKDDLPDELVFHINYLGSDQ---------------PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      ++++.. .    ..+++.++..               ...-..||++...++++-.+++.+...|++++.++...+++++
T Consensus       237 v~~~~~-~----~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l  311 (408)
T d1t3ia_         237 GKEEIL-E----AMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYL  311 (408)
T ss_dssp             ECHHHH-H----HSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cchhhh-h----cCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHH
Confidence            986421 1    1122222211               0011258999998999999999888888888888887777765

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.94  E-value=1e-25  Score=212.69  Aligned_cols=260  Identities=13%  Similarity=0.003  Sum_probs=189.1

Q ss_pred             CCCChHHHHHHHHHHhcc---c-CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINK---N-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~---~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      .++.+..+.+++.+.++.   + ...+..+....++.+++++.+++++|++++     .+++|+|+|+++.+++.++.. 
T Consensus        16 ~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~-----~i~~~~g~t~a~~~~~~~l~~-   89 (381)
T d1elua_          16 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN-----TITITDNVTTGCDIVLWGLDW-   89 (381)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG-----GEEEESSHHHHHHHHHHHSCC-
T ss_pred             ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcc-----cEEEECChHHHhhhcchhhhh-
Confidence            345556677877766542   2 223333445667777899999999999863     389999999999999887632 


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHH----HHHhhCCeeEEEEecCCcccc-CHHHHHHHHhhCceEEEEecCCCcc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARYFEVELKEVKLEEGYYVM-NPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~~----~~~~~G~~v~~v~~~~~~~~~-d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                                 ..+++|++++.+|+++..    .++..|++++.+|.+...... +.+.++++++++|+++++++++|+|
T Consensus        90 -----------~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~t  158 (381)
T d1elua_          90 -----------HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNT  158 (381)
T ss_dssp             -----------CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTT
T ss_pred             -----------cCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccc
Confidence                       125789999999987554    445579999999987532222 3578888889999999999999999


Q ss_pred             cccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCC
Q 018437          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       216 G~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~  295 (356)
                      |.+.|+++|.++||++...+  ++++|+|++++.+..       ++++...++|++++++|||+++|.|+|+++++++..
T Consensus       159 G~~~~~~~I~~l~~~~~~~~--~~~~~vD~~~~~g~~-------~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~  229 (381)
T d1elua_         159 GQVLPLAEIMAVCRRHQGNY--PVRVLVDGAQSAGSL-------PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCL  229 (381)
T ss_dssp             CCBCCHHHHHHHHHHCCSSS--CCEEEEECTTTBTTB-------CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTG
T ss_pred             cccchhhHHHHHHhhccccc--ccccccccccccccc-------cccccccccccccccccccccccchhhHHHhhHHHH
Confidence            99999999999999862211  689999999987655       355556689999999999999999999999976532


Q ss_pred             CccccccccCCCCCC--------C-------CCccccCCCChhHHHHHHHHHHHhCHHHH-HHHHHHHHhccCcc
Q 018437          296 LPDELVFHINYLGSD--------Q-------PTFTLNFSKGSSQIIAQYYQFIRLGFEEI-TFTFISSLKVCPFL  354 (356)
Q Consensus       296 ~~~~~~~~~~~~~~~--------~-------~~~~~~~tr~~~~~~~~~~~l~~lg~~G~-~~~~~~~~~~a~~l  354 (356)
                      .  .+  .+.+.++.        .       ......||++....+++.++++.+...|. +++.++..+++++|
T Consensus       230 ~--~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l  300 (381)
T d1elua_         230 G--EI--NPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFL  300 (381)
T ss_dssp             G--GC--CCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             H--hc--CcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHH
Confidence            1  11  11111111        0       01113478888888889999998877764 44556666666655

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=7.7e-26  Score=211.68  Aligned_cols=194  Identities=17%  Similarity=0.141  Sum_probs=150.7

Q ss_pred             CChHHHHHHHHHHhcccCC-CcccCc-----chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYV-DMDEYP-----VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~-~~~~~~-----~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      ..++++.+++.++.+.... .+...+     ....+.+.+++.+|+++|.+.       ..+|+|||+||+.++.++.++
T Consensus        13 ~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~-------~~~t~g~t~a~~~~~~al~~~   85 (364)
T d2e7ja1          13 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDV-------ARVTNGAREAKFAVMHSLAKK   85 (364)
T ss_dssp             CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSE-------EEEESSHHHHHHHHHHHHCCT
T ss_pred             cCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCE-------EEEECcHHHHHHHHHHHHhCC
Confidence            3457788887765432111 010111     111244556777999999875       789999999999999988543


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhC-----ceEEEEecCCCc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDEN-----TICVAAILGSTL  214 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~-----~~~v~~~~~~~~  214 (356)
                                   +++||++.++|++....++..|++++.+|+++ .++.+|+++|++++++.     +++|++++++|+
T Consensus        86 -------------gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~  152 (364)
T d2e7ja1          86 -------------DAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGN  152 (364)
T ss_dssp             -------------TCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTT
T ss_pred             -------------CcEEEeecccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCC
Confidence                         67999999999999999999999999999864 35899999999999753     457889999999


Q ss_pred             ccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       215 tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      +|.+.|+++|.++|++|      |+++|+|+||+.+..|       .+....++|+++.|+||++++|.++|+++.+++
T Consensus       153 tG~~~~l~~I~~ia~~~------~i~livD~a~~~g~~~-------~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~  218 (364)
T d2e7ja1         153 YGNLPDVKKIAKVCSEY------DVPLLVNGAYAIGRMP-------VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE  218 (364)
T ss_dssp             TCCCCCHHHHHHHHHTT------TCCEEEECTTTBTTBC-------CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred             Cceeecchhheeccccc------cchhhccccchhhhhh-------hcccccccceeeeccccccCCCCCEEEEEECHH
Confidence            99999999999999999      9999999999876553       233334789999999999988888999988754

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=5.2e-24  Score=200.60  Aligned_cols=203  Identities=18%  Similarity=0.141  Sum_probs=163.2

Q ss_pred             CCCChHHHHHHHHHHhcccCCCccc----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHH
Q 018437           65 TTWMEPECDKLVMASINKNYVDMDE----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (356)
Q Consensus        65 ~~~~~~~v~~~i~~~~~~~~~~~~~----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (356)
                      ++++++.+.+++.+++.+..+++..    +....++.+++++.+++++|++++     .+++++|+|+++..++.++...
T Consensus        10 ~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~-----~i~~~~~~T~~l~~~~~~~~~~   84 (376)
T d1eg5a_          10 TTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS-----EIFFTSCATESINWILKTVAET   84 (376)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG-----GEEEESCHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC-----cEEEECCHHHHHHhhhhccccc
Confidence            4566688899998888765555432    223455666889999999999873     4899999999999988766443


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHH---HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccc
Q 018437          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (356)
Q Consensus       141 ~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (356)
                      .         ..+++.|+++...|.++....   +..|++++.||++++ +++|+++++++++++|++|++++++++||.
T Consensus        85 ~---------~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~-~~id~~~l~~~i~~~t~lv~is~v~~~tG~  154 (376)
T d1eg5a_          85 F---------EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR-GVVKLEELEKLVDEDTFLVSIMAANNEVGT  154 (376)
T ss_dssp             T---------TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT-SCBCHHHHHHHCCTTEEEEEEESBCTTTCB
T ss_pred             c---------cccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCC-CeECHHHHHHhcCCCceEEEEECCccccce
Confidence            1         122457778877777755544   445999999999874 899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCC
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~  294 (356)
                      +.|+++|.++++.+..    +++++||++++.+..       +.++...++|.+++++||| ++|.|+|+++++++.
T Consensus       155 ~~~~~~i~~~~~~~~~----~~~~~vD~~q~~g~~-------~~d~~~~~~D~~~~s~~K~-~gp~G~~~l~~~~~~  219 (376)
T d1eg5a_         155 IQPVEDVTRIVKKKNK----ETLVHVDAVQTIGKI-------PFSLEKLEVDYASFSAHKF-HGPKGVGITYIRKGV  219 (376)
T ss_dssp             BCCHHHHHHHHHHHCT----TCEEEEECTTTTTTS-------CCCCTTTCCSEEEEEGGGG-TSCTTCEEEEECTTS
T ss_pred             eeeehhhhhhhhhccc----CceeEEEeeeccccc-------cccccccCccceeccccee-ecCCCceeEEeccCc
Confidence            9999999999977744    889999999987666       3566666899999999999 489999999997653

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5e-22  Score=187.45  Aligned_cols=258  Identities=10%  Similarity=0.017  Sum_probs=187.2

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      |++-.|+..++.|.+++....   .++  .++.+.++.+++++.+++++|.+.+    ..+++|.|||+++..++..+..
T Consensus        22 l~~pGP~~~~~~Vl~am~~~~---i~H--Rs~~f~~i~~ea~~~l~~llg~~~~----~~ii~~gsgT~a~~~~i~~l~~   92 (388)
T d1h0ca_          22 LLGPGPSNLPPRIMAAGGLQM---IGS--MSKDMYQIMDEIKEGIQYVFQTRNP----LTLVISGSGHCALEAALVNVLE   92 (388)
T ss_dssp             ECSSSCCCCCHHHHHHHTCCC---CCT--TSHHHHHHHHHHHHHHHHHHTCCCS----EEEEESSCHHHHHHHHHHHHCC
T ss_pred             cccCCCCCCCHHHHHHhCcCC---CCC--CCHHHHHHHHHHHHHHHHHhCCCCC----cEEEEcCcHHHHHHHHHHHhhc
Confidence            344445566678877763211   112  4667889999999999999999852    3478899999999999987753


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHH--HHHHhhCCeeEEEEecCCccccCHHHHHHHHh-hCceEEEEecCCCccc
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTG  216 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG  216 (356)
                      +             ++++++....|.+..  ..+...+..+..++.+.. ..+|.+.+++.+. .++++|++++.+|.+|
T Consensus        93 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG  158 (388)
T d1h0ca_          93 P-------------GDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPG-GHYTLQEVEEGLAQHKPVLLFLTHGESSTG  158 (388)
T ss_dssp             S-------------SCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTT
T ss_pred             c-------------CCceeeecccceeeeeccccccccccccccccCCc-cccchHHHHHHhccCCcceEEEeeeeeccc
Confidence            2             467888888887643  334456777777777664 7888888877665 4889999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       217 ~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      .+.|+++|+++|+++      |+++++|++++.+..       +.++...++|.+++++|||+++|.|+|+++++.....
T Consensus       159 ~i~pi~~i~~~~~~~------g~~~~vD~~qs~g~~-------~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~  225 (388)
T d1h0ca_         159 VLQPLDGFGELCHRY------KCLLLVDSVASLGGT-------PLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKK  225 (388)
T ss_dssp             EECCCTTHHHHHHTT------TCEEEEECTTTTTTS-------CCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHH
T ss_pred             cccCHHHHHHHhhcc------cccceeccccccccc-------cccccccccceecccccccccCCCceEEEeecHHHHH
Confidence            999999999999999      999999999987655       3566666899999999999999999999998653110


Q ss_pred             cccccc----cc---------CCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          297 PDELVF----HI---------NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       297 ~~~~~~----~~---------~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                       .....    ..         .+...........+|.+....+++.+++..+...|++++.++..++++++
T Consensus       226 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l  295 (388)
T d1h0ca_         226 -KMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYL  295 (388)
T ss_dssp             -HHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             -hhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHH
Confidence             00000    00         01111111122346777777888888888888888888888888777665

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.87  E-value=2.8e-22  Score=190.16  Aligned_cols=205  Identities=14%  Similarity=-0.018  Sum_probs=151.0

Q ss_pred             cccCCCChHHHHHHHHHHhcccCCCccc----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHH
Q 018437           62 SFVTTWMEPECDKLVMASINKNYVDMDE----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        62 ~~~~~~~~~~v~~~i~~~~~~~~~~~~~----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (356)
                      +...++.+..+.+++.+++.....+...    .....++.+++++.+++++|+++++     +++|+++|++++.++...
T Consensus        33 ~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~e-----i~~~~~~T~~~~~~~~~~  107 (404)
T d1qz9a_          33 GNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGE-----VVVTDTTSINLFKVLSAA  107 (404)
T ss_dssp             TTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTS-----EEECSCHHHHHHHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCc-----EEEecCchHHHHHHhhhh
Confidence            3334455667888888877543222211    1233456778999999999999844     899999999998877655


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccc
Q 018437          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (356)
                      .......       ..+..|++++..|++........+.++..++++.. +..+++.++++++++|++|++++.+|.||.
T Consensus       108 ~~~~~~~-------~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~  179 (404)
T d1qz9a_         108 LRVQATR-------SPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR-LVDSPEELPQAIDQDTAVVMLTHVNYKTGY  179 (404)
T ss_dssp             HHHHHHH-------STTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE-EESSGGGHHHHCSTTEEEEEEESBCTTTCB
T ss_pred             hhhhccc-------CCCcEEEEeccccchHHHHHHhhhheeeeeceecc-ccccchhHHHhcCCCceEEEEecccccccc
Confidence            3321110       11356777888877765555555555555555442 677889999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcC-eeEEEEeC
Q 018437          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWRT  292 (356)
Q Consensus       218 ~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l~~~~  292 (356)
                      +.|+++|+++|+++      ++++|||++|+.+..       ++++...++|.+++++|||+++|+| +|+++.++
T Consensus       180 ~~pv~~i~~~~~~~------~~~~~vD~~q~~g~~-------~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~  242 (404)
T d1qz9a_         180 MHDMQALTALSHEC------GALAIWDLAHSAGAV-------PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSP  242 (404)
T ss_dssp             BCCHHHHHHHHHHH------TCEEEEECTTTTTTS-------CCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECT
T ss_pred             eecHHHHhcccccc------ccceeEEeecccccc-------ccccccccceEEEEechhhcccCCceEEEEEech
Confidence            99999999999999      999999999987666       3455555899999999999877766 56666554

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2e-21  Score=183.01  Aligned_cols=266  Identities=12%  Similarity=-0.012  Sum_probs=189.6

Q ss_pred             cccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           62 SFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        62 ~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      ...|++.++.|.++|...   ...+  .++.+.++.+++++.++++++..... +...+++|+|||+++..++..+...+
T Consensus         8 ~PGP~~v~~~V~~Am~~~---~~~h--r~~~f~~~~~~~~~~~r~~~~~~~~~-~~~~i~~t~sgT~a~~~~~~~l~~~~   81 (382)
T d2bkwa1           8 IPGPIILSGAVQKALDVP---SLGH--TSPEFVSIFQRVLKNTRAVFKSAAAS-KSQPFVLAGSGTLGWDIFASNFILSK   81 (382)
T ss_dssp             SSSSCCCCHHHHHTTSCC---CCCT--TSHHHHHHHHHHHHHHHHHTTCCGGG-TCEEEEEESCTTHHHHHHHHHHSCTT
T ss_pred             CCCCCCCCHHHHHHhCcc---cCCC--CcHHHHHHHHHHHHHHHHHHhhhcCC-CCeEEEEeCcHHHHHHHHHHHHHHhc
Confidence            334445567777665211   1122  24566777788889999998863211 11347899999999999998874321


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCCccccc
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEF  218 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~  218 (356)
                                ..+++|++....|++  +...++..|..+..+...+.....+.+.+++++.+ +++++++++.+|.||..
T Consensus        82 ----------~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~  151 (382)
T d2bkwa1          82 ----------APNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVL  151 (382)
T ss_dssp             ----------CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEE
T ss_pred             ----------CCCCceEEEEechhhhhhhhhccccccccccccccCCCCccchhHHHHHhhhccchheeeeecccccccc
Confidence                      124688888888876  34555667888877765443357788888887764 68899999999999999


Q ss_pred             CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcc
Q 018437          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (356)
Q Consensus       219 ~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~  298 (356)
                      .|++++.++|+++..    ++++|||++++.+..       ++++...++|.+++++|||+++|+|+|+++++++... .
T Consensus       152 ~~~~~~~~~~~~~~~----~~~~~vDa~qs~g~~-------pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~-~  219 (382)
T d2bkwa1         152 SDLKAISQAIKQTSP----ETFFVVDAVCSIGCE-------EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMD-Y  219 (382)
T ss_dssp             CCHHHHHHHHHHHCT----TSEEEEECTTTTTTS-------CCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHH-H
T ss_pred             ccchhhhhhcccccc----ceeeeeecccccccc-------cccccccCeeEEeecccccCcCCCchhhhhccHHHHh-h
Confidence            999999999998822    589999999987766       4677667999999999999999999999999864211 1


Q ss_pred             ccc--c---ccCCCCCC-----------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          299 ELV--F---HINYLGSD-----------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       299 ~~~--~---~~~~~~~~-----------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ...  .   ...|....           .......+|.+...++++..+|+.+..+|++++.+++.++++++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~  292 (382)
T d2bkwa1         220 ALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFK  292 (382)
T ss_dssp             HTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            000  0   01111100           011123478888889999999999999999999888888776653

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=2.8e-20  Score=175.41  Aligned_cols=216  Identities=13%  Similarity=0.046  Sum_probs=169.3

Q ss_pred             hcCCCCcccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHH
Q 018437           52 LDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        52 ~~~~~~~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (356)
                      ..|...++|+.+.+.++ ++.+.+++.+++......|....+..++++++.+++.+..|.+.+.   .++++|+|+++++
T Consensus        28 ~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~---~~i~it~G~~~al  104 (382)
T d1b5pa_          28 RQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTP---EETIVTVGGSQAL  104 (382)
T ss_dssp             HTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCG---GGEEEESHHHHHH
T ss_pred             hCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhccccccc---ccceecCCHHHHH
Confidence            45655667777777654 5789999988887666667777788999999999999988877532   4589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEe
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      ..++.++.++             ++.|+++.|+|..+...++..|..++.+|.++ +++.+|+++|++++++++++++++
T Consensus       105 ~~~~~~l~~~-------------gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~  171 (382)
T d1b5pa_         105 FNLFQAILDP-------------GDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVN  171 (382)
T ss_dssp             HHHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEE
T ss_pred             HHHHHHhCCC-------------CCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEEC
Confidence            9999887653             57899999999999999999999999999864 358999999999999999999999


Q ss_pred             cCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCe
Q 018437          210 LGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGV  285 (356)
Q Consensus       210 ~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~  285 (356)
                      +|+||||.+   +.+++|.++|+++      ++++++|++|+.+..+  ..........+.-..+..|+.|.++ ....+
T Consensus       172 ~P~NPTG~~~s~~~~~~l~~~~~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~  243 (382)
T d1b5pa_         172 SPNNPTGAVYPKEVLEALARLAVEH------DFYLVSDEIYEHLLYE--GEHFSPGRVAPEHTLTVNGAAKAFAMTGWRI  243 (382)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBSS--SCCCCGGGTCTTTEEEEEESTTTTTCGGGCC
T ss_pred             CCCCCcchhCCHHHHHHHHHHHHHc------CeEEEEEccccceecC--CCCCCHHHcCCCCEEEEecchhhccCcHhhe
Confidence            999999998   4578899999999      9999999999876542  1111111112222344456889875 44789


Q ss_pred             eEEEEe
Q 018437          286 GWVVWR  291 (356)
Q Consensus       286 g~l~~~  291 (356)
                      |+++..
T Consensus       244 G~~~~~  249 (382)
T d1b5pa_         244 GYACGP  249 (382)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            998764

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.84  E-value=2.1e-20  Score=176.71  Aligned_cols=214  Identities=10%  Similarity=0.009  Sum_probs=166.5

Q ss_pred             cCCCCcccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHH
Q 018437           53 DGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (356)
Q Consensus        53 ~~~~~~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (356)
                      .|...++|+.+.|.++ ++.+.+++.++++.....|....+..++++++.+++.+..|++.+.   ..+++|+|+++++.
T Consensus        28 ~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~---~~i~it~G~~~al~  104 (388)
T d1j32a_          28 EGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA---DNILVTNGGKQSIF  104 (388)
T ss_dssp             TTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHHHH
T ss_pred             CCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCC---ceEEEcCCHHHHHH
Confidence            3455566766666654 4788899988887655567677788999999999999999887532   45899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEec
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      .++.++.++             ++.|++++|+|..+...++..|..++.++.+. +++.+|+++|+++++++++++++++
T Consensus       105 ~~~~~~~~~-------------gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~  171 (388)
T d1j32a_         105 NLMLAMIEP-------------GDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNT  171 (388)
T ss_dssp             HHHHHHCCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred             HHHHHHhCC-------------CCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECC
Confidence            999887653             57999999999999999999999999998854 3488999999999999999999999


Q ss_pred             CCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CC---CceEEEEcCCcCCC-C
Q 018437          211 GSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LP---LVKSINVSGHKYGL-V  281 (356)
Q Consensus       211 ~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~---~~Ds~~~~~hK~l~-~  281 (356)
                      |+||||.+-+   +++|.++|+++      ++++++|++|+.+..+.  +. ...+.  .+   .-..+..|+.|.+. .
T Consensus       172 P~NPTG~~~~~~~~~~l~~~~~~~------~~~iI~De~Y~~~~~~~--~~-~~s~~~~~~~~~~~~i~~~S~SK~~~~~  242 (388)
T d1j32a_         172 PSNPTGMVYTPDEVRAIAQVAVEA------GLWVLSDEIYEKILYDD--AQ-HLSIGAASPEAYERSVVCSGFAKTYAMT  242 (388)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCTT--CC-CCCGGGSCHHHHHTEEEEEESTTTTTCT
T ss_pred             CCCCCCcccchhhhhhhhcccccC------CeEEEchhhhhcccccC--CC-CCCHHHhCcccccceeEecCChhhhhcc
Confidence            9999999854   67788889999      99999999998755421  11 11111  11   12345567899875 3


Q ss_pred             CcCeeEEEEe
Q 018437          282 YAGVGWVVWR  291 (356)
Q Consensus       282 P~g~g~l~~~  291 (356)
                      ...+|+++..
T Consensus       243 GlRvG~~~~~  252 (388)
T d1j32a_         243 GWRVGFLAGP  252 (388)
T ss_dssp             TTCCEEEECC
T ss_pred             hhHeEEEEEC
Confidence            4679998753

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=2.7e-20  Score=175.56  Aligned_cols=214  Identities=12%  Similarity=0.032  Sum_probs=164.0

Q ss_pred             cccccccCCC-ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|+.+.+.. +++.+.+++.++++....+|....+..++++++.+++.+..+....  ....+++|+|+++++..++.+
T Consensus        28 i~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~--~~~~i~~t~G~~~~l~~~~~~  105 (388)
T d1gdea_          28 ISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD--PKTEIMVLLGANQAFLMGLSA  105 (388)
T ss_dssp             EECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC--TTTSEEEESSTTHHHHHHHTT
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCC--ChheeeeccCcchHHHHHHHH
Confidence            4666666654 3578889998888765556767778899999999999887776542  124589999999999999887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEecCCCcc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT  215 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (356)
                      +.++             ++.|+++.|+|..+...++..|++++.+|+++ +++.+|+++|+++++++++++++++|+|||
T Consensus       106 l~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPt  172 (388)
T d1gdea_         106 FLKD-------------GEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPT  172 (388)
T ss_dssp             TCCT-------------TCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred             hcCC-------------CCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCC
Confidence            7553             57999999999999999999999999999864 358999999999999999999999999999


Q ss_pred             cccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCC-CCcCeeEEEE
Q 018437          216 GEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVW  290 (356)
Q Consensus       216 G~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~-~P~g~g~l~~  290 (356)
                      |.+-   ++++|.++|+++      ++++++|++|+.+....-.......+. ...-..+..|..|.++ ....+|+++.
T Consensus       173 G~~~s~~~~~~l~~~a~~~------~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~  246 (388)
T d1gdea_         173 GAVLTKKDLEEIADFVVEH------DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA  246 (388)
T ss_dssp             CCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEEC
T ss_pred             CCcCCHHHHHHHHHHHHHc------CCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEe
Confidence            9994   578889999999      999999999987544210000001111 1112344567899765 4578999886


Q ss_pred             eC
Q 018437          291 RT  292 (356)
Q Consensus       291 ~~  292 (356)
                      .+
T Consensus       247 ~~  248 (388)
T d1gdea_         247 PS  248 (388)
T ss_dssp             CH
T ss_pred             ec
Confidence            43

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=1.2e-20  Score=175.87  Aligned_cols=256  Identities=10%  Similarity=-0.050  Sum_probs=167.9

Q ss_pred             cccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           62 SFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        62 ~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      +-.|.+.++.|.+++    .....++ .++...++.+++++.+++++|+++++   ...++|+|||+++..++..+..+ 
T Consensus         5 ~pGP~~~~~~V~~A~----~~~~~~~-~~~~~~~~~~~~r~~l~~l~~~~~~~---~~i~~t~s~T~~~~~~~~~l~~~-   75 (361)
T d1m32a_           5 TPGPLTTSRTVKEAM----LFDSCTW-DDDYNIGVVEQIRQQLTALATASEGY---TSVLLQGSGSYAVEAVLGSALGP-   75 (361)
T ss_dssp             SSSSCCCCHHHHHTT----CCCCCTT-SHHHHTTTHHHHHHHHHHHHCSSSSE---EEEEEESCHHHHHHHHHHHSCCT-
T ss_pred             cCCCCCCCHHHHHHh----hhhccCC-CcHHHHHHHHHHHHHHHHHhCCCCCC---EEEEECCCHHHHHHHHHHHhhhh-
Confidence            334445566666654    2222222 12334456678999999999998632   33678889999999888766321 


Q ss_pred             HHHHHhcCCCCCCC-eEEecCCCcch-HHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEecCCCccccc
Q 018437          142 QQKRKEQGKPYDKP-NIVTGANVQVC-WEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEF  218 (356)
Q Consensus       142 ~~~~~~~g~~~~~~-~vi~s~~~h~s-~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~  218 (356)
                                  ++ .++++...+.. +...+...+.....+..... ....+.+.+.....+++++|.+++.+|.||.+
T Consensus        76 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~  143 (361)
T d1m32a_          76 ------------QDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGML  143 (361)
T ss_dssp             ------------TCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEE
T ss_pred             ------------ccccceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccc
Confidence                        33 44444333332 44445556777766666542 13334455555666789999999999999999


Q ss_pred             CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcc
Q 018437          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (356)
Q Consensus       219 ~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~  298 (356)
                      .|+++|.++|+++      |+++++|++++.+..       ++++...++|++++++|||+++|.|.|+++++++... .
T Consensus       144 ~~i~~i~~~~~~~------g~~~~vDa~qs~G~~-------~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~-~  209 (361)
T d1m32a_         144 NPIDEVGALAHRY------GKTYIVDAMSSFGGI-------PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLA-A  209 (361)
T ss_dssp             CCHHHHHHHHHHH------TCEEEEECTTTTTTS-------CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHT-T
T ss_pred             hhhhhhhhhhccc------ceeeEeecccccCcc-------cccccccccceEEeeecccccCCCCceEEEechhhhh-h
Confidence            9999999999999      999999999987666       3566667899999999999999999999999864221 1


Q ss_pred             ccccccCCCCCC--------CCCccccCCCChhHHHHHHHHHHHhCHHHH-HHHHHHHHhccC
Q 018437          299 ELVFHINYLGSD--------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEI-TFTFISSLKVCP  352 (356)
Q Consensus       299 ~~~~~~~~~~~~--------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~-~~~~~~~~~~a~  352 (356)
                      .......+....        .......+|.+....+++..++..+..+|. ....++..++++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  272 (361)
T d1m32a_         210 CKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQR  272 (361)
T ss_dssp             CTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             hccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            100001111000        001113467777778888888877766654 344444444443

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=6.7e-19  Score=167.05  Aligned_cols=299  Identities=13%  Similarity=0.055  Sum_probs=208.7

Q ss_pred             ccccccccchhhhhcCCCCCCCCCCCCHHHHHHHHHHHhhhcCCC--Cc-ccccccCCCChHHHHHHHH--HHhcc-cCC
Q 018437           12 EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNP--RL-NLASFVTTWMEPECDKLVM--ASINK-NYV   85 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~--~~-~l~~~~~~~~~~~v~~~i~--~~~~~-~~~   85 (356)
                      ++++++|.++|....-....+|+ ++++.++++++.++..++.+-  .| .+ +.++...++.+.+.+.  ++++. .++
T Consensus        21 ~s~~dl~~~IP~~~~~~~~~lp~-~~sE~e~~r~~~~ls~kN~~~~~~fig~-G~~~~~~p~~i~~~~~~~~~~t~ytPy   98 (437)
T d1wyua1          21 ASLEDLFAHLPKEILSPPIDLPE-PLPEWKVLEELRRLAAQNLPAHKAFLGG-GVRSHHVPPVVQALAARGEFLTAYTPY   98 (437)
T ss_dssp             SSTGGGGTTSCGGGSSCCCCCCC-CCCHHHHHHHHHHHHHTSCCCTTCCCCS-SCCCCCCCHHHHHHHTSHHHHHCCSCC
T ss_pred             CCHHHHHHhccHHHhcCCCCCCC-CCCHHHHHHHHHHHHhCCCCcCccccCc-ccCCceeCHHHHHHHhChhhhhhCCCc
Confidence            57899999998876555567775 479999999999988776322  22 22 2233334566655442  45555 366


Q ss_pred             CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc
Q 018437           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV  165 (356)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~  165 (356)
                      .++.+++..++..+.+++++++.|++..      ......|..|...+++.+++...           +.+++++...|+
T Consensus        99 qpE~sQG~Lq~l~e~q~~l~eltGmd~~------n~s~~~ga~a~~~~~~~~~~~~~-----------~~~~~v~~~~~p  161 (437)
T d1wyua1          99 QPEVSQGVLQATFEYQTMIAELAGLEIA------NASMYDGATALAEGVLLALRETG-----------RMGVLVSQGVHP  161 (437)
T ss_dssp             SGGGCHHHHHHHHHHHHHHHHHHTSSEE------CSCBSSHHHHHHHHHHHHHHHHT-----------CCEEEEETTSCH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhCCCcc------ccCchHHHHHHHHHHHHHHhhhc-----------ccccccccccCh
Confidence            7888899999999999999999999851      23344667777778777765421           357888888887


Q ss_pred             hH----HHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcE
Q 018437          166 CW----EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPI  241 (356)
Q Consensus       166 s~----~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l  241 (356)
                      +.    ...++..|++++.+|.++.  ..+.++    +++++.+|++++||+. |.++++++|.+++++.      |.++
T Consensus       162 ~~~~v~~t~a~~~g~~vv~v~~~~~--~~~~~~----~~~~~Aavmi~~Pnt~-G~~ed~~~i~~~~h~~------G~l~  228 (437)
T d1wyua1         162 EYRAVLRAYLEAVGAKLLTLPLEGG--RTPLPE----VGEEVGAVVVQNPNFL-GALEDLGPFAEAAHGA------GALF  228 (437)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCBTT--BCCCCC----CCTTEEEEEEESSCTT-SBCCCHHHHHHHHHHT------TCEE
T ss_pred             HHhhhhhhhcccceeeEEeeecccc--cchhhh----hccceeEEEEcccccc-ccccchHHHHHHhhhc------cceE
Confidence            64    4455678999999998753  333322    5678999999999887 9999999999999999      9988


Q ss_pred             EEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-----cCeeEEEEeCCCCCccccccccCCCCC-------
Q 018437          242 HVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-----AGVGWVVWRTKDDLPDELVFHINYLGS-------  309 (356)
Q Consensus       242 ~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-----~g~g~l~~~~~~~~~~~~~~~~~~~~~-------  309 (356)
                      ++|+..-....  +.  .+-+   .|+|.+..+ ||.++.|     ++.|++.++++ +. +.++   ..+-+       
T Consensus       229 ~~~ad~~al~~--l~--~Pg~---~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~-l~-r~lP---grivg~s~d~~G  295 (437)
T d1wyua1         229 VAVADPLSLGV--LK--PPGA---YGADIAVGD-GQSLGLPMGFGGPHFGFLATKKA-FV-RQLP---GRLVSETVDVEG  295 (437)
T ss_dssp             EEECCTTGGGT--BC--CHHH---HTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGG-GG-GGCC---SCCEEEEEBTTS
T ss_pred             Eeeechhhhhc--cc--cccc---cccceEeec-cceeccccCCCcCccccccccch-hh-cccc---ccccccccccCC
Confidence            88876433211  11  1222   389999999 5544455     45699998753 22 2211   11100       


Q ss_pred             CC------CC----------ccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          310 DQ------PT----------FTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       310 ~~------~~----------~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      ..      .+          -.-.||-++..++..|+++..+|.+|++++.+++..+|+||+
T Consensus       296 ~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~  357 (437)
T d1wyua1         296 RRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLH  357 (437)
T ss_dssp             CEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHH
Confidence            00      00          011378888888999999999999999999999999999985

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.82  E-value=1.6e-19  Score=169.05  Aligned_cols=258  Identities=10%  Similarity=-0.033  Sum_probs=176.1

Q ss_pred             cccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           60 LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        60 l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      |++-.|+..++.|.++|....   ..+  .++.+.++.+++++.+++++|.+.+    ..++++.|||+++..++..+..
T Consensus        21 l~~PGP~~v~~~Vl~am~~~~---~~h--r~~ef~~i~~~~r~~l~~ll~~~~~----~~i~~~g~gT~~~~~~~~~~~~   91 (377)
T d1vjoa_          21 LLGPGPSNAHPSVLQAMNVSP---VGH--LDPAFLALMDEIQSLLRYVWQTENP----LTIAVSGTGTAAMEATIANAVE   91 (377)
T ss_dssp             ECSSSCCCCCHHHHHHHSSCC---CCT--TSHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCC
T ss_pred             eecCCCCCCCHHHHHHhCcCC---CCC--CCHHHHHHHHHHHHHHHHHhCCCCC----eEEEEcCcHHHHHHHHHHhccc
Confidence            555556666778877763211   112  3567888999999999999999752    3467788899999998887644


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHH-HHHHHHhhCceEEEEecCCCccc
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPV-KAVELVDENTICVAAILGSTLTG  216 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~-~L~~~i~~~~~~v~~~~~~~~tG  216 (356)
                      .             ++++++....|.+  +...+...+.....+....+ ...+.+ .......+++..|.+++.+|.||
T Consensus        92 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg  157 (377)
T d1vjoa_          92 P-------------GDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG-EVFSLEELRTALETHRPAILALVHAETSTG  157 (377)
T ss_dssp             T-------------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTT
T ss_pred             c-------------ccccceeeechhhhhhhhhhhhhcccccccccCCC-CcccchhhhhhhhcCcceeeeeeeeeccce
Confidence            2             4567776667665  33444455666666666554 344444 44455566889999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       217 ~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      .+.|+++|.++||++      |+.+++|++++.+..       +.++...++|.+++++|||+++|.|+|++++++.. +
T Consensus       158 ~~~~i~~i~~~~~~~------g~~~~vDa~~~~g~~-------~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~-~  223 (377)
T d1vjoa_         158 ARQPLEGVGELCREF------GTLLLVDTVTSLGGV-------PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRA-I  223 (377)
T ss_dssp             EECCCTTHHHHHHHH------TCEEEEECTTTTTTS-------CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHH-H
T ss_pred             eeechhhhhhhhhhc------cceEEEecchhhhhh-------hhcccccccceeeecccccccCCCEEEEecchhhH-H
Confidence            999999999999999      999999999976555       35566668999999999999999999999887531 1


Q ss_pred             ccccccccCCCCCC----------CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          297 PDELVFHINYLGSD----------QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       297 ~~~~~~~~~~~~~~----------~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      .........+....          .......++........+...+..+..+|.++..++..+.++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l  291 (377)
T d1vjoa_         224 EKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYL  291 (377)
T ss_dssp             HHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             hhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhh
Confidence            11100111111000          01112234555554555666666677777777777777666554

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.81  E-value=4.1e-19  Score=168.16  Aligned_cols=216  Identities=11%  Similarity=0.016  Sum_probs=167.0

Q ss_pred             cCCCCcccccccCC----CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhH
Q 018437           53 DGNPRLNLASFVTT----WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (356)
Q Consensus        53 ~~~~~~~l~~~~~~----~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (356)
                      .|...++|+.+.|.    ++++.+.+++.+++......|....+..++++++.+++.+.+|++.+.   ..+++|+|+++
T Consensus        28 ~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~---~~i~i~~G~~~  104 (395)
T d1xi9a_          28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP---DDVRVTAAVTE  104 (395)
T ss_dssp             TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHH
T ss_pred             CCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccc---cccccccccch
Confidence            45555667666552    345688999988887655557777788999999999999999988632   45889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEE
Q 018437          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVA  207 (356)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~  207 (356)
                      ++.+++.++.++             +++|++++|+|..+...++..|++++.++.+. +++.+|++++++++.+++++++
T Consensus       105 ~~~~~~~~~~~~-------------Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~  171 (395)
T d1xi9a_         105 ALQLIFGALLDP-------------GDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA  171 (395)
T ss_dssp             HHHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred             hhhhhhhhhcCC-------------CCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccccEEE
Confidence            999988887553             57999999999999999999999999999753 4589999999999999999999


Q ss_pred             EecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC-cccccCCCce-EEEEcCCcCCC-C
Q 018437          208 AILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVK-SINVSGHKYGL-V  281 (356)
Q Consensus       208 ~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D-s~~~~~hK~l~-~  281 (356)
                      ++.|+||||.+.   .+++|.++|+++      +++++.|.+|..+..+  .+.. ...+. .... .+..|+.|.++ .
T Consensus       172 l~~P~NPTG~~~s~~~~~~l~~~~~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~-~~~~vi~~~S~SK~~~~~  242 (395)
T d1xi9a_         172 VINPNNPTGALYDKKTLEEILNIAGEY------EIPVISDEIYDLMTYE--GEHISPGSLT-KDVPVIVMNGLSKVYFAT  242 (395)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBSS--SCCCCHHHHC-SSSCEEEEEESTTTTCCG
T ss_pred             ecCCCCCccchhhHHHHHHHHhhhhhc------CeeEEecccccccccc--ccccchhhcC-CCCCEEEEeCcchhcccc
Confidence            999999999984   467889999999      9999999999875442  1111 11111 1112 33446899755 4


Q ss_pred             CcCeeEEEEeCC
Q 018437          282 YAGVGWVVWRTK  293 (356)
Q Consensus       282 P~g~g~l~~~~~  293 (356)
                      ...+|++++.+.
T Consensus       243 GlRvG~~~~~~~  254 (395)
T d1xi9a_         243 GWRLGYMYFVDP  254 (395)
T ss_dssp             GGCCEEEEEECT
T ss_pred             hhhcEeeEecCH
Confidence            567898877654

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.9e-19  Score=164.73  Aligned_cols=200  Identities=9%  Similarity=0.011  Sum_probs=152.3

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      ++++.+.+++.+++......|....+ .++++++.+++++.+|.+.+.   ..+++|+|+++++..++.++.++      
T Consensus        12 ~~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~---~~i~it~G~~~~l~~~~~~l~~~------   81 (361)
T d1d2fa_          12 ATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDS---QTVVYGPSVIYMVSELIRQWSET------   81 (361)
T ss_dssp             CCCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCG---GGEEEESCHHHHHHHHHHHSSCT------
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCc---ceEEEeCCHHHHHHHHhhhcccc------
Confidence            34578999998887655555655556 568899999999999987532   45899999999998888877543      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC--CccccCHHHHHHHHhh-CceEEEEecCCCcccccC---C
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFE---D  220 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~--~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~---~  220 (356)
                             +++|++++|+|..+..+++..|.+++.++.+.  +++.+|++.+++.+.+ +++++++++|+||||.+-   .
T Consensus        82 -------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~  154 (361)
T d1d2fa_          82 -------GEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDE  154 (361)
T ss_dssp             -------TCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTH
T ss_pred             -------ccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhh
Confidence                   57999999999999999999999999888753  4578999999999854 788999999999999874   4


Q ss_pred             HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-C-CCceEEEEcCCcC-CCCCcCeeEEEEeC
Q 018437          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L-PLVKSINVSGHKY-GLVYAGVGWVVWRT  292 (356)
Q Consensus       221 i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~-~~~Ds~~~~~hK~-l~~P~g~g~l~~~~  292 (356)
                      +++|.++|+++      ++++++|++|..+..+   ......+. . ..-..+..+..|. +....++|++++..
T Consensus       155 ~~~i~~~~~~~------~~~lI~De~y~~~~~~---~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~  220 (361)
T d1d2fa_         155 LEIMADLCERH------GVRVISDEIHMDMVWG---EQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIEN  220 (361)
T ss_dssp             HHHHHHHHHHT------TCEEEEECTTTTCBCS---SSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECS
T ss_pred             hhhhhhhhhhh------heeeeecccccccccc---cccccccccccccccccccccccccccccccceeeecch
Confidence            78999999999      9999999999876542   11111111 1 1223444556674 34456888887754

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.81  E-value=1.2e-18  Score=163.84  Aligned_cols=253  Identities=8%  Similarity=0.017  Sum_probs=178.6

Q ss_pred             cccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           62 SFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        62 ~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      .-.|+..++.|.+++....   ..+  .++.+.++.+++++.+++++|.+..    ..++++.|||+++..++..+..+ 
T Consensus        22 ~PGP~~~~~~V~~Am~~~~---~~h--r~~ef~~i~~~~r~~L~~ll~~~~~----~~i~~~gsgT~a~ea~~~~l~~~-   91 (388)
T d2ch1a1          22 GPGPSNCSKRVLTAMTNTV---LSN--FHAELFRTMDEVKDGLRYIFQTENR----ATMCVSGSAHAGMEAMLSNLLEE-   91 (388)
T ss_dssp             SSSSCCCCHHHHHHTTSCC---CCT--TCHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCCT-
T ss_pred             eCCCCCCCHHHHHHhCcCC---CCC--CCHHHHHHHHHHHHHHHHHhCCCCC----eEEEEcCcHHHHHHHHHHHhccc-
Confidence            3344445678877753221   122  3567888999999999999999752    23566778999999888877432 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchH--HHHHHhhCCeeEEEEecCCccccCHHHHHHHHh-hCceEEEEecCCCccccc
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEF  218 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~  218 (356)
                                  ++++++....|++.  ...+...+..++.++.++. ...+.+.+++++. .+++++.+++.+|.+|..
T Consensus        92 ------------~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~  158 (388)
T d2ch1a1          92 ------------GDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPD-RPFSLETLARAIELHQPKCLFLTHGDSSSGLL  158 (388)
T ss_dssp             ------------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHHHHHCCSEEEEESEETTTTEE
T ss_pred             ------------cccccccccccccccchhhhhhhcccccccccccc-cccchhhhhhhhccCCcceeeeeecccccccc
Confidence                        46777777777664  3445566888888887764 5677776666654 578999999999999999


Q ss_pred             CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcc
Q 018437          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (356)
Q Consensus       219 ~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~  298 (356)
                      .|+++|.++||++      +++++||++++.+..       +.++...++|.++.+.|||+++|.|+|+++++.+... .
T Consensus       159 ~~~~~i~~~~~~~------~~~~~vD~~ss~g~~-------pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~-~  224 (388)
T d2ch1a1         159 QPLEGVGQICHQH------DCLLIVDAVASLCGV-------PFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALD-V  224 (388)
T ss_dssp             CCCTTHHHHHHHT------TCEEEEECTTTBTTB-------CCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHH-H
T ss_pred             cchhhhcchhccc------cceeeeeeeeccccc-------ccchhccCceEEEEccccccCCCCeEEEEeccHHHHH-h
Confidence            9999999999999      999999999987666       3566666899999999999999999999998753211 1


Q ss_pred             cccccc-------------CCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhcc
Q 018437          299 ELVFHI-------------NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVC  351 (356)
Q Consensus       299 ~~~~~~-------------~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a  351 (356)
                      ......             .+...........+|.+...+.++..+++.+..+|..+...+.....
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  290 (388)
T d2ch1a1         225 IRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECA  290 (388)
T ss_dssp             HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             hhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            000000             01111111122346777777888888888887777766666655443

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=5.8e-18  Score=162.40  Aligned_cols=316  Identities=10%  Similarity=0.012  Sum_probs=220.1

Q ss_pred             cccccccccchhhhhcCC-CCCCCCCCCCHHHHHHHHHHHhhhcCCC--Cc-ccccccCCCChHHHHHHHHHHhcc-cCC
Q 018437           11 REILSSTFASRYVRAAIP-RFKMPDNSMPKEAAYQVINDELMLDGNP--RL-NLASFVTTWMEPECDKLVMASINK-NYV   85 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~-~~~lp~~~~~~~~i~~~~~~~~~~~~~~--~~-~l~~~~~~~~~~~v~~~i~~~~~~-~~~   85 (356)
                      -++++++|..+|....+. .+.+|+  +++.|++++++++..+|.+.  .+ .++++ ..+..|.+.+.+.+++.. .++
T Consensus        19 ~~si~el~~~IP~~~~~~~~l~LP~--~sE~El~r~~~~la~kN~~~~~~~~~lG~~-~~hy~P~v~~~~~~~~TaYTPY   95 (471)
T d1wyub1          19 VKAVPKAEDLIPKEHLREVPPRLPE--VDELTLVRHYTGLSRRQVGVDTTFYPLGSC-TMKYNPKLHEEAARLFADLHPY   95 (471)
T ss_dssp             CSSCCCHHHHSCGGGBCSSCCCCCC--CCHHHHHHHHHHHHTTCCCTTTSCCCBTTT-CCCCCCHHHHHHHHTTSSCCTT
T ss_pred             CCcchhhhhhCCHHHHcCCCCCCCC--CCHHHHHHHHHHHHhCCCCccccccCCccc-cCccCcchhhhHHHHHhccCCC
Confidence            357899999999977665 467884  89999999999998876432  23 33333 333346666767666654 577


Q ss_pred             Cc-ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 018437           86 DM-DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (356)
Q Consensus        86 ~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h  164 (356)
                      +| +.++|+.+...+.+.++++|+|++.      .......|..|...|+.++++..+++    +.......++.+...|
T Consensus        96 QPaEiSQG~LQalfEfQtmi~eLTGMdv------aNaS~yDGatA~aeA~~ma~r~~~~~----~~~~~~~~~~~~~~~~  165 (471)
T d1wyub1          96 QDPRTAQGALRLMWELGEYLKALTGMDA------ITLEPAAGAHGELTGILIIRAYHEDR----GEGRTRRVVLVPDSAH  165 (471)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHHHHHHHT----TCTTTCCEEEEETTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCc------cccccchHHHHHHHHHHHHHHHhhhc----ccccccccccCCcccc
Confidence            76 7799999999999999999999984      12344456666667666665543221    1111123445555566


Q ss_pred             chHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCccccc-CCHHHHHHHHHHhhhccCCCCcEEE
Q 018437          165 VCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHV  243 (356)
Q Consensus       165 ~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~-~~i~~I~~i~~~~~~~~~~~~~l~v  243 (356)
                      ..........+..++.++.+.. +..|.+.+.....+++.+++++.|++. |.+ ++++++.+++++.      +..+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~v~v~~p~~~-g~~e~~~~~~~~~~h~~------g~~~~~  237 (471)
T d1wyub1         166 GSNPATASMAGYQVREIPSGPE-GEVDLEALKRELGPHVAALMLTNPNTL-GLFERRILEISRLCKEA------GVQLYY  237 (471)
T ss_dssp             THHHHHHHHTTCEEEEECBCTT-SSBCHHHHHHHCSTTEEEEEECSSCTT-SCCCTTHHHHHHHHHHH------TCEEEE
T ss_pred             cceeeeeecccceeeccccccc-ccccchhhhhhhhccccceeeccCCCc-ccccchhhhhHHHHHhc------cccccc
Confidence            6666777777888888887764 899999999999888889999999888 555 5699999999999      999999


Q ss_pred             ecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-----cCeeEEEEeCCCCCcccccccc-----CC----CCC
Q 018437          244 DAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-----AGVGWVVWRTKDDLPDELVFHI-----NY----LGS  309 (356)
Q Consensus       244 D~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-----~g~g~l~~~~~~~~~~~~~~~~-----~~----~~~  309 (356)
                      |++.-........   +.   ..++|.++++.|+.++.|     +++|++.++++ + .+.++...     .+    ...
T Consensus       238 ~~~~~~~~~~l~~---p~---~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~-~-~R~~PGRiV~~~~~~~~~~~~R  309 (471)
T d1wyub1         238 DGANLNAIMGWAR---PG---DMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-L-APYLPVPLVERGEEGFYLDFDR  309 (471)
T ss_dssp             EGGGGGGTTTTCC---HH---HHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-G-GGGCCSCEEEECSSCEEEECCC
T ss_pred             cccchhhhhhccc---cC---cccccccccccccccccccccccccccceeehhh-h-hccCCCceecCCCccccccCCC
Confidence            9865432221111   11   236888899999975554     67888888753 2 22222110     00    001


Q ss_pred             CCC-CccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          310 DQP-TFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       310 ~~~-~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      .+. ...-.||-++..++..+.+|..+|.+|++++.+++..+|+|++
T Consensus       310 EqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla  356 (471)
T d1wyub1         310 PKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLK  356 (471)
T ss_dssp             TTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHH
Confidence            110 0112388888889999999999999999999999999999985

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.5e-18  Score=161.92  Aligned_cols=238  Identities=12%  Similarity=0.031  Sum_probs=175.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhhhcCCCCcccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHH
Q 018437           27 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIA  105 (356)
Q Consensus        27 ~~~~~lp~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la  105 (356)
                      .|..++|.-+.+...-+..+.+.     +..+||+.+.|.++ ++.+.+++.+++......|....|..++++.+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~a~~-----~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~   77 (382)
T d1u08a_           3 IPQSKLPQLGTTIFTQMSALAQQ-----HQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTE   77 (382)
T ss_dssp             CCCCSCCCCCCCHHHHHHHHHHH-----TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred             CchhhCCCCCCcHHHHHHHHhcc-----CCCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH
Confidence            35667777666654444444322     33456777777654 4688899988887766677788899999999999999


Q ss_pred             HHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC
Q 018437          106 HLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE  185 (356)
Q Consensus       106 ~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~  185 (356)
                      +.+|.+.+.  ...+++|+|+++++.++++++.+.             ++.|+++.+.++.+...+...|..+..+++++
T Consensus        78 ~~~g~~~~~--~~~I~vt~G~~~al~~~~~~l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~  142 (382)
T d1u08a_          78 RLYGYQPDA--DSDITVTAGATEALYAAITALVRN-------------GDEVICFDPSYDSYAPAIALSGGIVKRMALQP  142 (382)
T ss_dssp             HHHSCCCCT--TTTEEEESSHHHHHHHHHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECCT
T ss_pred             HHhCCCCCC--CceEEeccchHHHHHHHHhhcccc-------------cceEEEecccccchhhhhhhccccceeccccc
Confidence            999987532  234899999999999999988653             57899999999999999999999999999887


Q ss_pred             CccccCHHHHHHHHhhCceEEEEecCCCcccccCCH---HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc
Q 018437          186 GYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDV---KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD  262 (356)
Q Consensus       186 ~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i---~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~  262 (356)
                      +++.+|.+++++++.++++++++++||||||++.+.   ++|.++|+++      +++++.|..|.....+.........
T Consensus       143 ~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~------~~~ii~d~~~~~~~~~~~~~~~~~~  216 (382)
T d1u08a_         143 PHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGH------EIFVISDEVYEHINFSQQGHASVLA  216 (382)
T ss_dssp             TTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTS------CCEEEEECTTTTCBCCSSCCCCGGG
T ss_pred             ccccCCHHHHhhhhccCccEEEECCCCcccccccccccchhhhhhhccc------cceeeeecchhhccccccccccccc
Confidence            778999999999999999999999999999999654   5666777777      9999999998764432111111111


Q ss_pred             cc--CCCceEEEEcCCc-CCCCCcCeeEEEEe
Q 018437          263 FR--LPLVKSINVSGHK-YGLVYAGVGWVVWR  291 (356)
Q Consensus       263 ~~--~~~~Ds~~~~~hK-~l~~P~g~g~l~~~  291 (356)
                      ..  ..++ .+..+..| ++.....+|+++..
T Consensus       217 ~~~~~~~~-i~~~s~SK~~~~pG~RiG~~v~~  247 (382)
T d1u08a_         217 HPQLRERA-VAVSSFGKTYHMTGWKVGYCVAP  247 (382)
T ss_dssp             SHHHHTTE-EEEEEHHHHTTCGGGCCEEEECC
T ss_pred             cccccCcE-EEEeeccccccCCcccchhhhcc
Confidence            10  1122 33344455 55566899998763

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.78  E-value=6.3e-18  Score=160.57  Aligned_cols=219  Identities=13%  Similarity=0.054  Sum_probs=160.2

Q ss_pred             CcccccccCCC-----ChHHHHHHHHHHhccc-CCCcccCcchHHHHHHHHHHHHHHhCCCCCC---CCCCCeEEeCChh
Q 018437           57 RLNLASFVTTW-----MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVAD---DKTAVGVGTVGSS  127 (356)
Q Consensus        57 ~~~l~~~~~~~-----~~~~v~~~i~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~---~~~~~~~~t~Ggt  127 (356)
                      .++|+.+.|+.     +.+.+.+++.++++.. ...|....|..++++++.+++.+.++.....   .....+++|+|++
T Consensus        32 vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~  111 (412)
T d1bw0a_          32 IIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGS  111 (412)
T ss_dssp             CEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHH
T ss_pred             cEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccc
Confidence            35666665432     2356677777666543 3346667788999999999999987553211   1123589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEE
Q 018437          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICV  206 (356)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v  206 (356)
                      +++..++.++.++             +++|++++|+|..+...++..|++++.+|+++ +++..|+++|++++.++++++
T Consensus       112 ~al~~~~~~l~~~-------------Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~  178 (412)
T d1bw0a_         112 HGILMAITAICDA-------------GDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLL  178 (412)
T ss_dssp             HHHHHHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEE
T ss_pred             cchhhhhhhhhcc-------------ccceeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhhcccccc
Confidence            9999999887653             57999999999999999999999999999975 358899999999999999999


Q ss_pred             EEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-cc-CC-CceEEE-EcCCcC-
Q 018437          207 AAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR-LP-LVKSIN-VSGHKY-  278 (356)
Q Consensus       207 ~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~-~~-~~Ds~~-~~~hK~-  278 (356)
                      ++++|+||||.+   +.+++|.++|+++      ++++++|++|+.+...-..+..... .. .. ....++ .++.|. 
T Consensus       179 ~l~np~NPtG~~~~~~~~~~i~~~~~~~------~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~  252 (412)
T d1bw0a_         179 IVTNPSNPCGSNFSRKHVEDIVRLAEEL------RLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL  252 (412)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT
T ss_pred             ccccccccccccchhhhccccccccccC------CeeeechhhHHHhccCCCCCccccccccccccccccccccccCccC
Confidence            999999999998   4577888899999      9999999999876542111100000 00 11 122333 346775 


Q ss_pred             CCCCcCeeEEEEeCCC
Q 018437          279 GLVYAGVGWVVWRTKD  294 (356)
Q Consensus       279 l~~P~g~g~l~~~~~~  294 (356)
                      +.....+|++++.+..
T Consensus       253 ~~~G~RvG~~~~~~~~  268 (412)
T d1bw0a_         253 VVPGWRLGWLLYVDPH  268 (412)
T ss_dssp             SCGGGCCEEEEEECTT
T ss_pred             ccCCCCcccccccchh
Confidence            4466899999987643

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.78  E-value=2e-18  Score=163.23  Aligned_cols=217  Identities=15%  Similarity=0.120  Sum_probs=160.5

Q ss_pred             cCCCCcccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHH
Q 018437           53 DGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (356)
Q Consensus        53 ~~~~~~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (356)
                      .|+..++|+.+.+.++ ++.+.+++.++++.+...|..  +..++++++.+++++.+|++.+.   ..+++|+|+++++.
T Consensus        29 ~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~--g~~~Lr~aia~~~~~~~g~~~~~---~~I~vt~G~~~al~  103 (394)
T d1c7na_          29 VGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTG--PTEEYKKTVKKWMKDRHQWDIQT---DWIINTAGVVPAVF  103 (394)
T ss_dssp             CCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBC--CCHHHHHHHHHHHHHHHCCCCCG---GGEEEESSHHHHHH
T ss_pred             cCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCCC--CCHHHHHHHHHHHHHhcCCCCCC---cceEeeccchhhhh
Confidence            3444455666555544 578999998888765455533  45689999999999999987633   46899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC--CccccCHHHHHHHHh-hCceEEEE
Q 018437          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMNPVKAVELVD-ENTICVAA  208 (356)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~--~~~~~d~~~L~~~i~-~~~~~v~~  208 (356)
                      ++++++.++             ++.|+++.+.++.+.......|...+.++...  ..+.+|.+.++.++. ++++++++
T Consensus       104 ~~~~~~~~p-------------gd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l  170 (394)
T d1c7na_         104 NAVREFTKP-------------GDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF  170 (394)
T ss_dssp             HHHHHHCCT-------------TCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred             hhhcccccc-------------ccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEe
Confidence            999988654             57999999999999999999999988887632  347899999988775 56899999


Q ss_pred             ecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc--CCCceEEEEcCCcCC-CCC
Q 018437          209 ILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHKYG-LVY  282 (356)
Q Consensus       209 ~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK~l-~~P  282 (356)
                      ++|+||||.+-   .+++|+++|+++      ++++++|++|..++.+...........  ....-.+..|..|.+ .++
T Consensus       171 ~~P~NPTG~v~s~~~l~~l~~~a~~~------~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G  244 (394)
T d1c7na_         171 CSPHNPVGRVWKKDELQKIKDIVLKS------DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAG  244 (394)
T ss_dssp             ESSBTTTTBCCCHHHHHHHHHHHHHS------SCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGG
T ss_pred             cccccccceeccHHHhhhhhcccccc------ceeEeccccccccccCCccccchhhhhcccccceeecccccccccccc
Confidence            99999999995   467789999999      999999999987654211110001110  112234445677854 456


Q ss_pred             cCeeEEEEeCC
Q 018437          283 AGVGWVVWRTK  293 (356)
Q Consensus       283 ~g~g~l~~~~~  293 (356)
                      ..+|++++.++
T Consensus       245 ~R~g~~~~~~~  255 (394)
T d1c7na_         245 MGMSNIIIKNP  255 (394)
T ss_dssp             GCCEEEECCCH
T ss_pred             cccccccccCh
Confidence            88888887653

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=4.9e-18  Score=159.23  Aligned_cols=218  Identities=15%  Similarity=0.001  Sum_probs=168.8

Q ss_pred             hcCCCCcccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHH
Q 018437           52 LDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        52 ~~~~~~~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (356)
                      ..|++.++|+.+.|..+ ++.+.+++.+.++.....|....|..++++++.+++.+..|.+.+.   ..+++|+|+++++
T Consensus        25 ~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~---~~i~~t~G~~~al  101 (375)
T d1o4sa_          25 KKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISP---DQVVVTNGAKQAL  101 (375)
T ss_dssp             HTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG---GGEEEESHHHHHH
T ss_pred             HCCCCeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhcccccccc---ccccccCcHHHHH
Confidence            45666677777766643 4688888888877655567667789999999999999999987633   5689999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHhhCceEEEEe
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAI  209 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~  209 (356)
                      ..++.++.++             ++.|+++.|+|+.+...+...|..+..+++++ +.+.+|.+.++....+++++++++
T Consensus       102 ~~~~~~l~~~-------------gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  168 (375)
T d1o4sa_         102 FNAFMALLDP-------------GDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLIN  168 (375)
T ss_dssp             HHHHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEE
T ss_pred             HHHHHHHhCC-------------CCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhccCccEEEEe
Confidence            9999888653             57899999999999999999999999888864 358899999999998899999999


Q ss_pred             cCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCC-CCcC
Q 018437          210 LGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAG  284 (356)
Q Consensus       210 ~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~-~P~g  284 (356)
                      +|+||||.+   +.+++|.++|++|      +++++.|++|+.+....- +....... ...--.+..+..|.+. ....
T Consensus       169 nP~NPTG~~~s~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R  241 (375)
T d1o4sa_         169 SPNNPTGVVYRREFLEGLVRLAKKR------NFYIISDEVYDSLVYTDE-FTSILDVSEGFDRIVYINGFSKSHSMTGWR  241 (375)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBCSSC-CCCHHHHCSSSTTEEEEEESTTTTTCGGGC
T ss_pred             CCCCCccCCCCHHHHHHHHHhHHHc------CCceehHhhhcccccccc-ccccccccCCCCCEEEEeechhhccCCccc
Confidence            999999998   4567888999999      999999999986544211 11111111 1122345567899765 5689


Q ss_pred             eeEEEEeC
Q 018437          285 VGWVVWRT  292 (356)
Q Consensus       285 ~g~l~~~~  292 (356)
                      +|+++..+
T Consensus       242 ~G~~~~~~  249 (375)
T d1o4sa_         242 VGYLISSE  249 (375)
T ss_dssp             CEEEECCH
T ss_pred             cccccccc
Confidence            99987643

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1.2e-18  Score=162.25  Aligned_cols=241  Identities=13%  Similarity=0.077  Sum_probs=170.3

Q ss_pred             cccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           62 SFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        62 ~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      ...|+..++.|.+++....   ..+  .++.+.++.+++++.++++++.+.     ...+++.|||+++..+++.+..+ 
T Consensus         5 ~PGP~~v~~~V~~am~~~~---~~h--r~~~f~~i~~~~~~~l~~ll~~~~-----~~i~~~gsgT~a~e~~~~nl~~~-   73 (348)
T d1iuga_           5 TPGPVRLHPKALEALARPQ---LHH--RTEAAREVFLKARGLLREAFRTEG-----EVLILTGSGTLAMEALVKNLFAP-   73 (348)
T ss_dssp             SSSSCCCCHHHHHHHHSCC---CCT--TSHHHHHHHHHHHHHHHHHHTCSS-----EEEEEESCHHHHHHHHHHHHCCT-
T ss_pred             CCCCCCCCHHHHHHhcCCC---CCC--CCHHHHHHHHHHHHHHHHHhCCCC-----CEEEEeCchHHHHHHHHHhcccc-
Confidence            3345555678887764322   111  345778889999999999999864     34789999999998888877532 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccC
Q 018437          142 QQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFE  219 (356)
Q Consensus       142 ~~~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~  219 (356)
                                  +++|++...++++  +...++..|..+..++.+.. -..+++.   ...++++.|++++..|.+|.+.
T Consensus        74 ------------g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g-~~~~~~~---~~~~~~~~v~~~h~eTstG~~~  137 (348)
T d1iuga_          74 ------------GERVLVPVYGKFSERFYEIALEAGLVVERLDYPYG-DTPRPED---VAKEGYAGLLLVHSETSTGALA  137 (348)
T ss_dssp             ------------TCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCTTT---SCCSSCSEEEEESEETTTTEEC
T ss_pred             ------------cccceeecchHHHHHHHHHHHhcCcccccccccCC-Ccccccc---ccccCCCeeEEEecchhhhhhc
Confidence                        4567777777665  56677778888888887653 2334332   3345788999999999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccc
Q 018437          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (356)
Q Consensus       220 ~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~  299 (356)
                      |+++|.++|+++..    +.++++|++++.+..       +.++...++|.+..++|||+++|+|+|+++++++. +. .
T Consensus       138 ~i~~i~~~~~~~~~----~~l~~vDavss~g~~-------~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~-le-~  204 (348)
T d1iuga_         138 DLPALARAFKEKNP----EGLVGADMVTSLLVG-------EVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRA-LE-R  204 (348)
T ss_dssp             CHHHHHHHHHHHCT----TCEEEEECTTTBTTB-------CCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHH-HH-T
T ss_pred             cHHHHHHHHHhhhc----cceeechhhhccccc-------ccccccccCCEEEeccccceecCCceeeeeechHH-Hh-h
Confidence            99999999999832    578999999886655       34555568999999999999999999999998642 11 1


Q ss_pred             cccccCCCCC-----CCCCccccCCCChhHHHHHHHHHHHhCHHHHHH
Q 018437          300 LVFHINYLGS-----DQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITF  342 (356)
Q Consensus       300 ~~~~~~~~~~-----~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~  342 (356)
                      ......|+.-     ........+|++...++++..+|+.+-.+|.+.
T Consensus       205 ~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~  252 (348)
T d1iuga_         205 LKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEH  252 (348)
T ss_dssp             CCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHH
T ss_pred             hcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHH
Confidence            1111111110     001122357898888899999998775555433

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=4.3e-18  Score=159.22  Aligned_cols=204  Identities=14%  Similarity=0.019  Sum_probs=150.4

Q ss_pred             cccccccCC-CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      ++|+.+.|. ++++.+.+++.+++.. ...|....+..+++++    +++.+++++     ..+++|+|+++++..++.+
T Consensus        28 I~ls~g~p~~~~p~~i~~al~~~l~~-~~~Y~~~~G~~elr~a----iA~~~~~~~-----~~Iiit~G~~~al~~~~~~   97 (368)
T d1v2da_          28 VNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREA----LAEEFAVEP-----ESVVVTSGATEALYVLLQS   97 (368)
T ss_dssp             EECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHH----HHHHHTSCG-----GGEEEESSHHHHHHHHHHH
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHhhc-ccCCCCCcCCHHHHHH----HHhhcccCC-----cceeeccchHHHHHHHhhc
Confidence            455555554 3457889999888764 2345455566666554    777788886     3489999999999999988


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec--CCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      +..+             ++.|+++.++|..+...+...|.+++.++++  .+++.+|++.|+++++++++++++++|+||
T Consensus        98 l~~~-------------~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NP  164 (368)
T d1v2da_          98 LVGP-------------GDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNP  164 (368)
T ss_dssp             HCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTT
T ss_pred             cccc-------------cccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCc
Confidence            7543             5789999999999999999999998888874  345899999999999999999999999999


Q ss_pred             ccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCC-cCCCCCcCeeEEEE
Q 018437          215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH-KYGLVYAGVGWVVW  290 (356)
Q Consensus       215 tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h-K~l~~P~g~g~l~~  290 (356)
                      ||.+-+   +++|+++|+++      ++++++|++|+.+....  ..............+..+.. |+++....+|+++.
T Consensus       165 tG~~~~~~~l~~l~~~a~~~------~i~ii~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~  236 (368)
T d1v2da_         165 TGLVFGERELEAIARLARAH------DLFLISDEVYDELYYGE--RPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVG  236 (368)
T ss_dssp             TCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBSSS--CCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEEC
T ss_pred             ccccCCHHHHHHHHHHHHHc------CCeeeechhhhhhcccc--cccccccccccccceeecccccccccccccccccc
Confidence            999965   78899999999      99999999998654421  11111111222233334443 56666678898875


Q ss_pred             eC
Q 018437          291 RT  292 (356)
Q Consensus       291 ~~  292 (356)
                      .+
T Consensus       237 ~~  238 (368)
T d1v2da_         237 PK  238 (368)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=3.3e-18  Score=161.20  Aligned_cols=216  Identities=15%  Similarity=0.009  Sum_probs=161.6

Q ss_pred             hcCCCCcccccccCCCC-hHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHH
Q 018437           52 LDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        52 ~~~~~~~~l~~~~~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (356)
                      ..|...++|+.+.|+.+ ++.+.+++.+... +...|....|..++++++.+++.+.+|++.+.   ..+++|+|+++++
T Consensus        25 ~~g~~vi~l~~G~p~~~~p~~~~~al~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~---~~I~it~G~~~~l  100 (389)
T d2gb3a1          25 KRGVRIHHLNIGQPDLKTPEVFFERIYENKP-EVVYYSHSAGIWELREAFASYYKRRQRVDVKP---ENVLVTNGGSEAI  100 (389)
T ss_dssp             HTTCEEEECSSCCCCSCCCTHHHHHHHHTCC-SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG---GGEEEESHHHHHH
T ss_pred             HcCCCEEECCCCCCCCCCCHHHHHHHHhcCC-CCCCCCCCcCCHHHHHHHHHHHHHhcCCCccc---ceEEecccccccc
Confidence            34555566777666644 4577788876543 44556667788999999999999999987532   4589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEec
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (356)
                      ..++.++.++             ++.|+++.|.++.+...+...|+.++.++.+++.+..+.+.+.+.+.+++++++++.
T Consensus       101 ~~~~~~l~~~-------------gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n  167 (389)
T d2gb3a1         101 LFSFAVIANP-------------GDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSN  167 (389)
T ss_dssp             HHHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEES
T ss_pred             cccccccccC-------------CCeEEEeCCCCccccccccccCccccccccccccccchhhhhhhhcccCccEEEeCC
Confidence            9998887653             579999999999999999999999999999765566677778888888899999999


Q ss_pred             CCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcC-CCCCcCee
Q 018437          211 GSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY-GLVYAGVG  286 (356)
Q Consensus       211 ~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~-l~~P~g~g  286 (356)
                      |+||||.+-   .+++|.++|+++      +++++.|.+|+.+..+  ............-..+..+..|. +.....+|
T Consensus       168 P~NPtG~~~s~~~~~~i~~~a~~~------~~~iI~De~y~~~~~~--~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG  239 (389)
T d2gb3a1         168 PCNPTGVVYGKDEMRYLVEIAERH------GLFLIVDEVYSEIVFR--GEFASALSIESDKVVVIDSVSKKFSACGARVG  239 (389)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCS--SCCCCGGGSCCTTEEEEEESTTTTTCGGGCCE
T ss_pred             CCccccccchHHHHHHHHhhcccC------CEEEEEeccccccccc--cccccccccccccccccccccccccCccccee
Confidence            999999984   578899999999      9999999999875542  11111111122223344455555 44447899


Q ss_pred             EEEEeC
Q 018437          287 WVVWRT  292 (356)
Q Consensus       287 ~l~~~~  292 (356)
                      +++..+
T Consensus       240 ~~~~~~  245 (389)
T d2gb3a1         240 CLITRN  245 (389)
T ss_dssp             EEECSC
T ss_pred             eeeccc
Confidence            988654

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=6.4e-18  Score=158.24  Aligned_cols=185  Identities=14%  Similarity=0.124  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcC
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (356)
                      ++-.+++.+.++.+.  +..++...++|+.    +++++|.+.       .+++++||.|+.+++.++.-          
T Consensus        12 ~~~~~~~~~~~~~~~--~~~G~~v~~~E~~----la~~~g~~~-------ai~~~sgt~Al~~al~al~~----------   68 (376)
T d1mdoa_          12 AEELAAVKTVLDSGW--ITTGPKNQELEAA----FCRLTGNQY-------AVAVSSATAGMHIALMALGI----------   68 (376)
T ss_dssp             HHHHHHHHHHHHHTC--CSSSHHHHHHHHH----HHHHHCCSE-------EEEESCHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHHhcCC--CcCCHHHHHHHHH----HHHHHCcCe-------EEEeCCHHHHHHHHHHHhCC----------
Confidence            444566777776543  3346667777755    899999874       68888999999999987621          


Q ss_pred             CCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHH
Q 018437          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT  229 (356)
Q Consensus       150 ~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~  229 (356)
                        ..+++|++|..+|.+...++...|+.+++++++.+++.+|++.|+++++++|++|+++   +..|...|+++|.++|+
T Consensus        69 --~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~---h~~G~~~~~~~i~~i~~  143 (376)
T d1mdoa_          69 --GEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGE  143 (376)
T ss_dssp             --CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHH
T ss_pred             --CCCCEEEEecccccccccchhccccceeeecccccccCCCHHHHHHhcCCCCeEEEEe---CCCCCccchhHHHHHHH
Confidence              1257999999999999999999999999999998779999999999999999998865   46799999999999999


Q ss_pred             HhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCC
Q 018437          230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (356)
Q Consensus       230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~  294 (356)
                      ++      |++++.|+|++.+..  ...   ......+...+++.++|++.++.| |++++.+++
T Consensus       144 ~~------~i~vIeD~a~a~g~~--~~~---~~~g~~g~~~~Sf~~~K~l~~g~G-G~i~t~~~~  196 (376)
T d1mdoa_         144 RY------GIPVIEDAAHATGTS--YKG---RHIGARGTAIFSFHAIKNITCAEG-GIVVTDNPQ  196 (376)
T ss_dssp             HH------TCCBCEECTTCTTCE--ETT---EETTSSSEEEEECCTTSSSCSSSC-EEEEESCHH
T ss_pred             hc------CceEEeccchhccCe--eCC---eecccccCccccCCCcCCCCCCCC-CEEEEechh
Confidence            99      999999999976543  111   111123566777889999976655 788776653

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.75  E-value=2.4e-17  Score=155.88  Aligned_cols=214  Identities=16%  Similarity=0.079  Sum_probs=152.9

Q ss_pred             CCC-cccccccCCC---ChHHHHHHHHHHhccc---CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChh
Q 018437           55 NPR-LNLASFVTTW---MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS  127 (356)
Q Consensus        55 ~~~-~~l~~~~~~~---~~~~v~~~i~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt  127 (356)
                      +|. ++|+.+.|.+   |.+.+.+++.+.+...   ...|....|..++++.+.+++.+.+|.+.+.   ..+++|+|++
T Consensus        28 ~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~---~~I~it~G~~  104 (403)
T d1wsta1          28 TSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSK---VEIMTVAGSQ  104 (403)
T ss_dssp             SSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTT---CEEEEESSHH
T ss_pred             CCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCh---HHeeecccch
Confidence            344 4777776654   3346666776665432   2346667789999999999999999987532   4589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccc-cCHHHHH-HHH---hhC
Q 018437          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYV-MNPVKAV-ELV---DEN  202 (356)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~-~d~~~L~-~~i---~~~  202 (356)
                      +++..++.++.++             ++.|+++.|+|..+...+...|++++.|+.+++... .+..... +..   ++.
T Consensus       105 ~al~~~~~~l~~~-------------gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (403)
T d1wsta1         105 QALDLIGRVFLNP-------------GDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRV  171 (403)
T ss_dssp             HHHHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHhhc-------------CCccccCCCcchhhhHHHhhccccceeEeecccCCccccccccchhhhhccccc
Confidence            9999998887543             579999999999999999999999999999864211 1122111 222   234


Q ss_pred             ceEEEEecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-cccCCCceEEEEcCCcC
Q 018437          203 TICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKY  278 (356)
Q Consensus       203 ~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Ds~~~~~hK~  278 (356)
                      +.+++++.++||||.+.   .+++|+++|++|      ++++++|++|+.+..+.. +.... ......-..+..|.+|+
T Consensus       172 ~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~------~~~li~De~y~~l~~~~~-~~~~~~~~~~~~~~i~~~S~SK~  244 (403)
T d1wsta1         172 KIVYTVSTFQNPAGVTMSVDRRKKLLELANEY------DFLIVEDGPYSELRYSGE-PTPPIKHFDDYGRVIYLGTFSKI  244 (403)
T ss_dssp             CEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCSSC-CCCCGGGGCSSSCEEEEEESTTT
T ss_pred             cccccccccCCCCCccCCHHHHHHHHHHHHhc------CceeccccchhheecCCC-CCCcccccCCCCcEEEEccccce
Confidence            56788899999999984   457888899999      999999999987554211 11111 11122345566789999


Q ss_pred             CCCCcCeeEEEEe
Q 018437          279 GLVYAGVGWVVWR  291 (356)
Q Consensus       279 l~~P~g~g~l~~~  291 (356)
                      +++...+|+++..
T Consensus       245 ~~~G~RiG~~i~~  257 (403)
T d1wsta1         245 LAPGFRIGWVAAH  257 (403)
T ss_dssp             TCGGGCCEEEEEC
T ss_pred             ecCcccccccccc
Confidence            8767899999874

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.74  E-value=2e-18  Score=166.52  Aligned_cols=223  Identities=12%  Similarity=-0.073  Sum_probs=142.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHH-HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhh-CC
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA-GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF-EV  176 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a-l~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~-G~  176 (356)
                      ++++.+|+++|++.       .+++++||.+++++ +.++..+             +++||++..+|.|+.+.+..+ +.
T Consensus        70 eae~~~A~~~ga~~-------a~f~~~Gtt~~n~a~i~a~~~~-------------gd~Vi~~~~~H~Sv~~~~~~l~~~  129 (462)
T d1c4ka2          70 AAEKHAARVYNADK-------TYFVLGGSSNANNTVTSALVSN-------------GDLVLFDRNNHKSVYNSALAMAGG  129 (462)
T ss_dssp             HHHHHHHHHTTCSE-------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHhCCCe-------EEEECCchHHHHHHHHHHhcCC-------------CCeEEecccchHHHHHHHHHHhcC
Confidence            45667999999975       67777776655555 5544432             689999999999998877655 44


Q ss_pred             eeEE--EEecCCc-------cccCHHHHHH---------HHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCC
Q 018437          177 ELKE--VKLEEGY-------YVMNPVKAVE---------LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD  238 (356)
Q Consensus       177 ~v~~--v~~~~~~-------~~~d~~~L~~---------~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~  238 (356)
                      .+++  +++++..       ..++.+.+++         ++..+++.+++.+.+|..|.+.|+++|+++|+++      +
T Consensus       130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~------g  203 (462)
T d1c4ka2         130 RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHL------C  203 (462)
T ss_dssp             EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGG------B
T ss_pred             CceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHc------C
Confidence            4444  4444421       1344444443         3334567777778888899999999999999999      9


Q ss_pred             CcEEEecccccccccccCCCCccccc--------CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCC
Q 018437          239 TPIHVDAASGGFIAPFLYPDLEWDFR--------LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD  310 (356)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~~~~~~--------~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~  310 (356)
                      +++|+|+|++.+..  ..+..+....        ..++|++++|.||+++++.+++++..++......     ..+....
T Consensus       204 ~~l~vD~A~~~~~~--~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~-----~~~~~~~  276 (462)
T d1c4ka2         204 DYIEFDSAWVGYEQ--FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQ-----LRYCDHK  276 (462)
T ss_dssp             SEEEEECTTCCGGG--SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTS-----TTCCCHH
T ss_pred             CEEEEechhhcccc--ccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEecccccccc-----chhhhHH
Confidence            99999999987654  2221111111        2367999999999998888887777765322110     1111100


Q ss_pred             C----CCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          311 Q----PTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       311 ~----~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      .    ......++.+....+.+-++...+..++.+++.++.+++++++
T Consensus       277 ~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~  324 (462)
T d1c4ka2         277 HFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEA  324 (462)
T ss_dssp             HHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            0    0011124555655666667777766666566666665555544

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.74  E-value=2.1e-17  Score=157.26  Aligned_cols=210  Identities=15%  Similarity=0.085  Sum_probs=160.6

Q ss_pred             cccccccCCCC-hHHHHHHHHHHhccc---CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHH
Q 018437           58 LNLASFVTTWM-EPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (356)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~i~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (356)
                      ++|+.+.|..+ ++.+.+++.+++...   ...|....|..++++++.+++++.+|.+.+.  ..++++|+|+++|+..+
T Consensus        29 I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p--~~~I~it~G~~~al~~~  106 (418)
T d2r5ea1          29 LNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINP--MTEVLVTVGAYEALYAT  106 (418)
T ss_dssp             EECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT--TTSEEEESHHHHHHHHH
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCc--cceEEEcCCCchhhhhh
Confidence            56766666643 467889988887643   2346667789999999999999999988531  24589999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC---------ccccCHHHHHHHHhhCce
Q 018437          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDENTI  204 (356)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~~~~  204 (356)
                      +.++.++             ++.|+++.|+|+.+...+...|..++.|+++.+         .+.++.+++.+...++++
T Consensus       107 ~~~l~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (418)
T d2r5ea1         107 IQGHVDE-------------GDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTK  173 (418)
T ss_dssp             HHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEE
T ss_pred             hhhcccc-------------ccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhcccc
Confidence            9988654             679999999999999999999999999998542         257889999999888999


Q ss_pred             EEEEecCCCcccccCC---HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CC---CceEEEEcCCc
Q 018437          205 CVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LP---LVKSINVSGHK  277 (356)
Q Consensus       205 ~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~---~~Ds~~~~~hK  277 (356)
                      +++++.|+||||.+-+   +++|+++|+++      +++++.|++|..+...   +.....+. ..   .--.+..|..|
T Consensus       174 ~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~------~~~iI~De~y~~~~~~---~~~~~s~~~~~~~~~~~i~~~S~SK  244 (418)
T d2r5ea1         174 MIIINTPHNPLGKVMDRAELEVVANLCKKW------NVLCVSDEVYEHMVFE---PFEHIRICTLPGMWERTITIGSAGK  244 (418)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCT---TCCCCCGGGSTTTGGGEEEEEEHHH
T ss_pred             ceecCCcCccccccccHHHHHHHhhhhhcC------CeeeecccchhhhccC---CCccccccccccccceeeeeecCCc
Confidence            9999999999999854   66788999999      9999999999875542   11111111 11   11233345667


Q ss_pred             CCC-CCcCeeEEEEe
Q 018437          278 YGL-VYAGVGWVVWR  291 (356)
Q Consensus       278 ~l~-~P~g~g~l~~~  291 (356)
                      .++ ....+|+++..
T Consensus       245 ~~~~pGlRiG~~~~~  259 (418)
T d2r5ea1         245 TFSLTGWKIGWAYGP  259 (418)
T ss_dssp             HTTCGGGCCEEEESC
T ss_pred             cccCCCccccccccc
Confidence            654 66899998764

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.74  E-value=4.7e-17  Score=152.26  Aligned_cols=210  Identities=15%  Similarity=0.091  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCe-EEec-CCCcchHHHHHHh
Q 018437           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPN-IVTG-ANVQVCWEKFARY  173 (356)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~-vi~s-~~~h~s~~~~~~~  173 (356)
                      ++.++++..++.++.++.    ...++|+||++|++.++.++..              ++. ++++ .+.|.++...++.
T Consensus        51 ~~~~l~~~~~~~~~~~~~----e~~~~~~~~~~a~~~~l~al~~--------------~~~vi~~~~~~~~~~~~~~~~l  112 (366)
T d2aeua1          51 FAEKVNEYGLKHLGGDEN----DKCVGFNRTSSAILATILALKP--------------KKVIHYLPELPGHPSIERSCKI  112 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHHHCC--------------SEEEEECSSSSCCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHccCCCc----cEEEEeCCHHHHHHHHHHHhCC--------------CCEEEEecCCCcchhHHHHHHh
Confidence            445666667777777652    3478999999999999887532              344 4454 5899999999999


Q ss_pred             hCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc-ccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc
Q 018437          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL-TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~-tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~  252 (356)
                      .|+++  ++.+      |+++|+++|+++|++|++++|+|+ ++.+.|+++|+++|+++      ++|+++|++|+.++.
T Consensus       113 ~g~~~--v~~~------d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~------~~~~i~De~y~~~~~  178 (366)
T d2aeua1         113 VNAKY--FESD------KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNK------EAIVFVDDASGARVR  178 (366)
T ss_dssp             TTCEE--EEES------CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHH
T ss_pred             cCCeE--ECCC------CHHHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccC------cEEEEEecCcccccc
Confidence            88874  3332      789999999999999999999886 44678999999999999      999999999987655


Q ss_pred             cccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHH
Q 018437          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQF  332 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l  332 (356)
                      +... .  ......++|.++.|.||++. +++.|+++.+++ .. +.+.....+.+.         +-+.....++..+|
T Consensus       179 ~~~~-~--~~~~~~~~di~~~S~sK~~~-g~~~G~i~~~~~-~i-~~~~~~~~~~g~---------~~~~~~~~a~~~aL  243 (366)
T d2aeua1         179 LLFN-Q--PPALKLGADLVVTSTDKLME-GPRGGLLAGKKE-LV-DKIYIEGTKFGL---------EAQPPLLAGIYRAL  243 (366)
T ss_dssp             HHTT-C--CCHHHHTCSEEEEETTSSSS-SCSCEEEEEEHH-HH-HHHHHHHHTTTC---------BCCHHHHHHHHHHH
T ss_pred             cccc-C--CCHhhcCceEEEeccccccc-ccceeEEEecHH-HH-HHHHHHHhcccc---------cCCHHHHHHHHHHH
Confidence            3111 1  11112378999999999875 557899987642 22 221111111111         11122244445567


Q ss_pred             HHhCHHHHHHHHHHHHhccC
Q 018437          333 IRLGFEEITFTFISSLKVCP  352 (356)
Q Consensus       333 ~~lg~~G~~~~~~~~~~~a~  352 (356)
                      +.+..+.+++..++..+++.
T Consensus       244 ~tl~~~r~~~~~~~~~~i~~  263 (366)
T d2aeua1         244 KNFNLERIRKAFERAKNFDL  263 (366)
T ss_dssp             HHCCHHHHHHHHHHHHHCCC
T ss_pred             HhccHHHHHHHHHHHHHHHH
Confidence            77776666666666555544

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=6.4e-17  Score=153.91  Aligned_cols=210  Identities=15%  Similarity=0.055  Sum_probs=156.3

Q ss_pred             CcccccccCCC---ChHHHHHHHHHHhccc---CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHH
Q 018437           57 RLNLASFVTTW---MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        57 ~~~l~~~~~~~---~~~~v~~~i~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (356)
                      .++|+.+.|.+   |.+.+.+++.++++..   ...|....|..++++++.+++.+.+|++..  ...++++|+|+++++
T Consensus        40 ~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~--~~~~I~it~G~~~al  117 (420)
T d1vp4a_          40 AISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGL--DEDNLIFTVGSQQAL  117 (420)
T ss_dssp             CEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSC--CGGGEEEEEHHHHHH
T ss_pred             cEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCC--CHHHeEeccchhhhH
Confidence            35777776653   3456667766665432   235666778899999999999999988631  124589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh---------
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---------  201 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---------  201 (356)
                      .+++.++.++             +++|+++.++|..+...++..|++++.+|.++.  .+|++.++..+.+         
T Consensus       118 ~~~~~~~~~~-------------Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~  182 (420)
T d1vp4a_         118 DLIGKLFLDD-------------ESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD--GMDLNVLERKLSEFDKNGKIKQ  182 (420)
T ss_dssp             HHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT--EECHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHhhhcc-------------ccccccccccccchhHHHHHHhhhccccccccc--ccccchhhhhhhhhHHHhhccc
Confidence            9998887543             579999999999999999999999999999863  5788877665432         


Q ss_pred             CceEEEEecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC--cccccCCCceEEEEcCC
Q 018437          202 NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWDFRLPLVKSINVSGH  276 (356)
Q Consensus       202 ~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~Ds~~~~~h  276 (356)
                      .+.+++++.|+||||.+.   .+++|.++|+++      ++++++|++|..+...  .+..  .........-.+..++.
T Consensus       183 ~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~------~i~ii~De~y~~l~~~--~~~~~~~~~~~~~~~~i~~~s~s  254 (420)
T d1vp4a_         183 VKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY------DLFIVEDDPYGALRYE--GETVDPIFKIGGPERVVLLNTFS  254 (420)
T ss_dssp             EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECSSTTCBCS--SCCCCCHHHHHCTTTEEEEEEST
T ss_pred             cceeeEecCCCCccchhhhhhhhhhhhhhhhcc------cccccccchhhhcccc--CcccccccccccccceeEEeccc
Confidence            244667889999999984   568899999999      9999999999875441  1111  11111334455666789


Q ss_pred             cCCCCCcCeeEEEEe
Q 018437          277 KYGLVYAGVGWVVWR  291 (356)
Q Consensus       277 K~l~~P~g~g~l~~~  291 (356)
                      |+++....+|+++..
T Consensus       255 k~~~~G~RiG~~~~~  269 (420)
T d1vp4a_         255 KVLAPGLRIGMVAGS  269 (420)
T ss_dssp             TTTCGGGCEEEEECC
T ss_pred             ccccccccccccccc
Confidence            998877899998753

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.3e-17  Score=155.12  Aligned_cols=213  Identities=13%  Similarity=0.046  Sum_probs=162.3

Q ss_pred             CCcccccccCCCC-hHHHHHHHHHHhccc--CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHH
Q 018437           56 PRLNLASFVTTWM-EPECDKLVMASINKN--YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (356)
Q Consensus        56 ~~~~l~~~~~~~~-~~~v~~~i~~~~~~~--~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (356)
                      ..++|+.+.|..+ ++.+.+++.+++...  ...|....|..++++.+.+++.+.+|.+.+.  ..++++|+|+++++.+
T Consensus        26 dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~--~~~I~it~G~~~al~~  103 (418)
T d1w7la_          26 DVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP--LRNVLVTVGGYGALFT  103 (418)
T ss_dssp             CCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH--HHHEEEESHHHHHHHH
T ss_pred             CCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCc--ccceeeccCcHHHHHH
Confidence            3456776666544 567889998888643  2356667789999999999999999987521  1348999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-----------CccccCHHHHHHHHhh
Q 018437          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-----------GYYVMNPVKAVELVDE  201 (356)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-----------~~~~~d~~~L~~~i~~  201 (356)
                      ++.++.++             ++.|+++.++++.|...+...|++++.++.++           +++.+|.+++.....+
T Consensus       104 ~~~~l~~~-------------g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  170 (418)
T d1w7la_         104 AFQALVDE-------------GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS  170 (418)
T ss_dssp             HHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCT
T ss_pred             HHHhhccC-------------CceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhccccc
Confidence            99888653             57999999999999999999999988888642           2478899999998888


Q ss_pred             CceEEEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC--cccccC-CCceEEEEcC
Q 018437          202 NTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWDFRL-PLVKSINVSG  275 (356)
Q Consensus       202 ~~~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~-~~~Ds~~~~~  275 (356)
                      ++++++++.|+||||.+   +.+++|.++|+++      +++++.|++|..+..+  ....  ...+.. ..-..+..|.
T Consensus       171 ~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~------~v~vI~De~Y~~l~~~--~~~~~~~~~~~~~~~~~i~~~S~  242 (418)
T d1w7la_         171 RTKALVLNTPNNPLGKVFSREELELVASLCQQH------DVVCITDEVYQWMVYD--GHQHISIASLPGMWERTLTIGSA  242 (418)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCT--TCCCCCGGGSTTTGGGEEEEEEH
T ss_pred             cccceeccCcCCcccccccHHHHHHHHHHHHhc------CCCchhhhhhHHhhcC--CCCCCCHHHccccccccceeccc
Confidence            99999999999999998   4577899999999      9999999999876542  1111  111111 1123445667


Q ss_pred             CcCC-CCCcCeeEEEEe
Q 018437          276 HKYG-LVYAGVGWVVWR  291 (356)
Q Consensus       276 hK~l-~~P~g~g~l~~~  291 (356)
                      .|.+ .....+|+++..
T Consensus       243 SK~~~~pG~RvG~~v~~  259 (418)
T d1w7la_         243 GKTFSATGWKVGWVLGP  259 (418)
T ss_dssp             HHHTTCGGGCCEEEECC
T ss_pred             CccccCCCCcccccccc
Confidence            8864 455899999874

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.68  E-value=5.7e-16  Score=145.70  Aligned_cols=189  Identities=13%  Similarity=0.093  Sum_probs=148.3

Q ss_pred             HHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCC
Q 018437           71 ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK  150 (356)
Q Consensus        71 ~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~  150 (356)
                      +-.+++.+.++.+......++...++|++    +++++|.+.       .+.+++||.|+.++++++.-           
T Consensus        14 ~~~~~~~~~l~~g~~~~~~g~~v~~fE~~----~a~~~g~~~-------~v~~~SGt~Al~lal~~l~~-----------   71 (384)
T d1b9ha_          14 AERNGLVRALEQGQWWRMGGDEVNSFERE----FAAHHGAAH-------ALAVTNGTHALELALQVMGV-----------   71 (384)
T ss_dssp             HHHHHHHHHHHTSCCBTTTCSHHHHHHHH----HHHHTTCSE-------EEEESCHHHHHHHHHHHTTC-----------
T ss_pred             HHHHHHHHHHHcCCeeecCCHHHHHHHHH----HHHHHCcCe-------EEEeCCHHHHHHHHHHHcCC-----------
Confidence            44566777777543223456777888876    888999975       78999999999999987621           


Q ss_pred             CCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHH
Q 018437          151 PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK  230 (356)
Q Consensus       151 ~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~  230 (356)
                       ..+++|++|..++.+...++...|+++++++++++++.+|++.+++.+.+++++|+   +.+..|...|+++|.++|++
T Consensus        72 -~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~---~~~~~g~~~d~~~i~~~~~~  147 (384)
T d1b9ha_          72 -GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISAD  147 (384)
T ss_dssp             -CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHH
T ss_pred             -CCCCEEEEeccccccccccccccccccccccccccccccchhhhcccccccccccc---cccccccccccccchhhhhh
Confidence             12579999999999999999999999999999887799999999999999998886   67888999999999999999


Q ss_pred             hhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCC
Q 018437          231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (356)
Q Consensus       231 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~  296 (356)
                      +      +++++.|+|++.+..  ........  ...+..+++++.|.+.++.| |++++.+++..
T Consensus       148 ~------~i~lieD~a~a~ga~--~~g~~~g~--~g~~~~~Sf~~~K~i~~g~G-G~i~t~~~~~~  202 (384)
T d1b9ha_         148 T------GVPLLQDAAHAHGAR--WQGKRVGE--LDSIATFSFQNGKLMTAGEG-GAVVFPDGETE  202 (384)
T ss_dssp             H------TCCBCEECTTCTTCE--ETTEEGGG--SSSCEEEECCTTSSSCSSSC-EEEEECTTCHH
T ss_pred             h------hhhhhhhhceecccc--cCCEecCc--ccccceeccccccccccccc-chhhhhhHHHH
Confidence            9      999999999976544  22211111  33567778889999866554 77777776543

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.67  E-value=1.3e-15  Score=145.21  Aligned_cols=185  Identities=12%  Similarity=0.044  Sum_probs=137.7

Q ss_pred             cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch
Q 018437           87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC  166 (356)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s  166 (356)
                      |....|..++++++.+++.+.+|..... +...+++|+|+++++..++.++.++             +++|+++.|+|..
T Consensus        79 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~-~~e~Ivit~G~~~al~~~~~~l~~~-------------Gd~Vlv~~P~y~~  144 (428)
T d1iaya_          79 FQDYHGLPEFRKAIAKFMEKTRGGRVRF-DPERVVMAGGATGANETIIFCLADP-------------GDAFLVPSPYYPA  144 (428)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTTCSCC-CTTSCEEEEHHHHHHHHHHHHHCCT-------------TCEEEEESSCCTT
T ss_pred             CcCCcchHHHHHHHHHHHHHHhCCCCCC-ChhhEEEcCCHHHHHHHHHHHhCCC-------------CCEEEEccCCchH
Confidence            4445578899999999999998854211 1235899999999999999887653             5799999999999


Q ss_pred             HHHHHHh-hCCeeEEEEecC-CccccCHHHHHHHHh------hCceEEEEecCCCcccccCC---HHHHHHHHHHhhhcc
Q 018437          167 WEKFARY-FEVELKEVKLEE-GYYVMNPVKAVELVD------ENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEET  235 (356)
Q Consensus       167 ~~~~~~~-~G~~v~~v~~~~-~~~~~d~~~L~~~i~------~~~~~v~~~~~~~~tG~~~~---i~~I~~i~~~~~~~~  235 (356)
                      +...+.. .|++++.|+++. +++.+|+++++++++      .+++++++++|+||||.+.+   +++|.++|+++    
T Consensus       145 ~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~----  220 (428)
T d1iaya_         145 FNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH----  220 (428)
T ss_dssp             HHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccC----
Confidence            9888775 488999999875 358999998877653      35788999999999999854   78899999999    


Q ss_pred             CCCCcEEEecccccccccccCCCC----------cccccCCCceEEEEcCCcCCC-CCcCeeEEEEeCC
Q 018437          236 GWDTPIHVDAASGGFIAPFLYPDL----------EWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTK  293 (356)
Q Consensus       236 ~~~~~l~vD~a~~~~~~~~~~~~~----------~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~~  293 (356)
                        ++++++|++|+.+..+  .+..          ........-..+..+..|.++ ....+|+++..++
T Consensus       221 --~~~vI~De~Y~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~  285 (428)
T d1iaya_         221 --NIHLVCDEIYAATVFD--TPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND  285 (428)
T ss_dssp             --TCEEEEECTTGGGCCS--SSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH
T ss_pred             --cEEEEecccccccccC--cccccccccccchhhccccccceEEEEecCCCcccCCCccccccccccc
Confidence              9999999999875542  1100          000001122356678899654 4578999887543

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.67  E-value=4e-16  Score=147.46  Aligned_cols=229  Identities=14%  Similarity=0.025  Sum_probs=153.4

Q ss_pred             HHHHHHHHhhhcCCCC-ccccccc---CC---CChHHHHHHHHHHhcccCC-CcccCcchHHHHHHHHHHHHHHhCCCCC
Q 018437           42 AYQVINDELMLDGNPR-LNLASFV---TT---WMEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVA  113 (356)
Q Consensus        42 i~~~~~~~~~~~~~~~-~~l~~~~---~~---~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l~g~~~~  113 (356)
                      |+..+++ +..+.+|. +||+.+.   +.   +..+.|+++.....+.... .|....|..++++++.+++.+..+....
T Consensus        15 i~~~~~~-~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~   93 (401)
T d7aata_          15 ILGVTEA-FKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFK   93 (401)
T ss_dssp             HHHHHHH-HHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHH-HhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccC
Confidence            5544433 33455554 5777663   11   2347888887766655433 4777789999999999998877665432


Q ss_pred             CCCCCCeEEe--CChhH---HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec-CCc
Q 018437          114 DDKTAVGVGT--VGSSE---AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGY  187 (356)
Q Consensus       114 ~~~~~~~~~t--~Ggt~---a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~  187 (356)
                      +   ..++.+  .+++.   ++...++++.++             +++|++++|+|+.+...++..|++++.+|+. +++
T Consensus        94 ~---~~i~~~~~~~~~g~~~~~~~~~~~l~~p-------------Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~  157 (401)
T d7aata_          94 S---GRYVTVQGISGTGSLRVGANFLQRFFKF-------------SRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKT  157 (401)
T ss_dssp             T---TCEEEEEEEHHHHHHHHHHHHHHHHCTT-------------CCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTT
T ss_pred             c---CceEEeccchHHHHHHHHHHhhHhhcCC-------------CceEEEecCCCcchhhHHHHcCCeEEEEecccccc
Confidence            1   112222  22222   333333333332             6799999999999999999999999999984 345


Q ss_pred             cccCHHHHHHHHh---hCceEEEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC--
Q 018437          188 YVMNPVKAVELVD---ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--  259 (356)
Q Consensus       188 ~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--  259 (356)
                      +..|.+.+.+.+.   ++++++++++|+||||.+   +.+++|.++|++|      +++++.|.+|..+..+-.....  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~------~~~ii~De~Y~~l~~~~~~~~~~~  231 (401)
T d7aata_         158 CSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR------NLLAYFDMAYQGFASGDINRDAWA  231 (401)
T ss_dssp             TEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTTTSCHHHHTHH
T ss_pred             ccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcc------eEEEEEeccchhhhcCCcccchhh
Confidence            8899999888874   468899999999999998   4578899999999      9999999999876542000000  


Q ss_pred             ccccc--CCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          260 EWDFR--LPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       260 ~~~~~--~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      ...+.  ......+...+.|++...+.+|+++....
T Consensus       232 ~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~  267 (401)
T d7aata_         232 LRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICR  267 (401)
T ss_dssp             HHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             hhhhhhhhcccceeEeccccceeeccccceeecchH
Confidence            00111  12333444445557777789999988653

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.66  E-value=1.5e-15  Score=140.56  Aligned_cols=247  Identities=9%  Similarity=0.015  Sum_probs=164.5

Q ss_pred             CChHHHHHHHHHHhcccCC--Cc-----ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYV--DM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~--~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      ..+|.+.+++.+.+.+...  +|     ..-....++|..+.+...++||+..      ..+-..+|+.||+.++.++.+
T Consensus        34 ~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~------anVqp~SGs~An~av~~all~  107 (405)
T d1kl1a_          34 FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH------ANVQPHSGAQANMAVYFTVLE  107 (405)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSE------EECCCSSHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCc------ceeeccCchHHHHHHHHHhcC
Confidence            4568889988776643211  11     1223667899999999999999974      345667889999999998866


Q ss_pred             HHHHHHHhcCCCCCCCeEEecC---CCcchHHHHHHh--hCCeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCC
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGA---NVQVCWEKFARY--FEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGST  213 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~---~~h~s~~~~~~~--~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~  213 (356)
                      +             +++|+..+   -.|.+.......  ...+++..++|++++.+|.+++++.+.+ +|++|++-...+
T Consensus       108 p-------------GD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y  174 (405)
T d1kl1a_         108 H-------------GDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY  174 (405)
T ss_dssp             T-------------TCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSC
T ss_pred             C-------------CCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEeccccc
Confidence            4             56777544   456554333332  2466777788877799999999999875 788776433333


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                        -...|++++.++|++.      |.++++|+++-.++..  ....+--  ++.+|.++.+.||.+.+|.| |+++++++
T Consensus       175 --~r~~d~~~~reIad~v------ga~l~~D~aH~~GLIa--~g~~~~P--~~~aDvvt~tThKtlrGPrg-g~I~~~~~  241 (405)
T d1kl1a_         175 --PRIIDFAKFREIADEV------GAYLMVDMAHIAGLVA--AGLHPNP--VPYAHFVTTTTHKTLRGPRG-GMILCQEQ  241 (405)
T ss_dssp             --CSCCCHHHHHHHHHHH------TCEEEEECTTTHHHHH--TTSSCCS--TTTCSEEEEESSSTTCCCSC-EEEEECHH
T ss_pred             --ccccChHHHHHHHhhh------CCEEecchhhHhhhhh--hhhcCCh--hhhhhheeccccccccCCCC-ceEEecch
Confidence              3455899999999999      9999999998554442  2211111  46799999999999999987 67766542


Q ss_pred             CCCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                       .. +.+. ..-++       .++|..-...++++..+++....+.++++.++..++|+.|+
T Consensus       242 -~~-~~i~-~avfP-------g~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa  293 (405)
T d1kl1a_         242 -FA-KQID-KAIFP-------GIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLA  293 (405)
T ss_dssp             -HH-HHHH-HHHTT-------TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             -hH-HHHH-hhhCc-------ccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence             21 1110 11111       22344445557777777776545555666666666666553

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.63  E-value=8.5e-15  Score=135.81  Aligned_cols=190  Identities=12%  Similarity=0.067  Sum_probs=133.1

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      +++.+.+++.+..+.. ..| ..++..    ++++++++.+|+++     ..+++|+|+++++...+.+..         
T Consensus        36 ~p~~~~~a~~~~~~~~-~~Y-p~~~~~----~Lr~aia~~~~v~~-----~~I~~~~g~~~~~~~~~~~~~---------   95 (355)
T d1lc5a_          36 MPVSVKRALIDNLDCI-ERY-PDADYF----HLHQALARHHQVPA-----SWILAGNGETESIFTVASGLK---------   95 (355)
T ss_dssp             CCHHHHHHHHHTGGGG-GSC-CCTTCH----HHHHHHHHHHTSCG-----GGEEEESSHHHHHHHHHHHHC---------
T ss_pred             CCHHHHHHHHHHHHHh-ccC-CCCChH----HHHHHHHHHhCCCH-----HHEEecccHHHHHHHHHhhhc---------
Confidence            4577888888776532 222 223333    35566888889986     348888888888776555431         


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCC-ccccCHHHHHHHHhhCceEEEEecCCCcccccCC---HHH
Q 018437          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKL  223 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---i~~  223 (356)
                            ++.+++..+.+..+.......+++++.+|++.+ ++.++ +++.+++.+++++|+++.|+||||.+.+   +.+
T Consensus        96 ------~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~  168 (355)
T d1lc5a_          96 ------PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERPLLQA  168 (355)
T ss_dssp             ------CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred             ------cccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccccccceeeeecccCcccccchhhhhhh
Confidence                  345666678888888888899999999999653 34544 5677778889999999999999999865   667


Q ss_pred             HHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEEeC
Q 018437          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRT  292 (356)
Q Consensus       224 I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~~  292 (356)
                      |.++|+++      ++++++|.+|..+...  ............-..+..|..|+++ ....+|+++..+
T Consensus       169 i~~~a~~~------~~~li~De~y~~~~~~--~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~  230 (355)
T d1lc5a_         169 IADRCKSL------NINLILDEAFIDFIPH--ETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD  230 (355)
T ss_dssp             HHHHHHHH------TCEEEEECTTGGGSTT--CCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC
T ss_pred             hhhhcccc------ccccccccceeeeeee--cccccccccccccceeecccccccccccccccceeccc
Confidence            88888999      9999999999865431  1111111122233466677999865 567899988654

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.63  E-value=2.2e-15  Score=143.67  Aligned_cols=183  Identities=14%  Similarity=0.038  Sum_probs=137.5

Q ss_pred             cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch
Q 018437           87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC  166 (356)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s  166 (356)
                      |....|..++++++.+++.+.+|....- +...+++|+|+++++..+++++.++             +++|+++.|+|..
T Consensus        80 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~-~pe~I~it~G~~~al~~~~~~l~~p-------------Gd~Vlv~~P~y~~  145 (431)
T d1m7ya_          80 FQDYHGLPAFKKAMVDFMAEIRGNKVTF-DPNHLVLTAGATSANETFIFCLADP-------------GEAVLIPTPYYPG  145 (431)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTTSSCC-CGGGEEEEEHHHHHHHHHHHHHCCT-------------TCEEEEEESCCTT
T ss_pred             CcCCcCcHHHHHHHHHHHHHHhCCCCCC-CcceEEECCCHHHHHHHHHHHhcCC-------------CCEEEEeCCCchh
Confidence            4445578899999999999998854211 1246899999999999999988653             5799999999999


Q ss_pred             HHHHHHh-hCCeeEEEEecCC-ccccCHHHHHHHHhh------CceEEEEecCCCcccccC---CHHHHHHHHHHhhhcc
Q 018437          167 WEKFARY-FEVELKEVKLEEG-YYVMNPVKAVELVDE------NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEET  235 (356)
Q Consensus       167 ~~~~~~~-~G~~v~~v~~~~~-~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~  235 (356)
                      +...+.. .|++++.|+++++ ++.+|++.+++++++      +++++++++|+||||.+-   .+++|.++|+++    
T Consensus       146 ~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~----  221 (431)
T d1m7ya_         146 FDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK----  221 (431)
T ss_dssp             HHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCcccccccccccccccccccccccc----
Confidence            8888875 5788888998753 488999999988864      578899999999999984   478889999999    


Q ss_pred             CCCCcEEEecccccccccccCCCCccccc----C---------CCceEEEEcCCcCCCC-CcCeeEEEEeC
Q 018437          236 GWDTPIHVDAASGGFIAPFLYPDLEWDFR----L---------PLVKSINVSGHKYGLV-YAGVGWVVWRT  292 (356)
Q Consensus       236 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~----~---------~~~Ds~~~~~hK~l~~-P~g~g~l~~~~  292 (356)
                        ++++++|++|+.+...  .+ ...++.    .         ..--.+..+..|.++. ...+|+++..+
T Consensus       222 --~~~vI~De~Y~~~~~~--~~-~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~  287 (431)
T d1m7ya_         222 --GIHLISDEIYSGTAFS--SP-SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSND  287 (431)
T ss_dssp             --TCEEEEECTTGGGCCS--SS-CCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESC
T ss_pred             --CcceeecccccccccC--CC-CCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccch
Confidence              9999999999875542  11 001100    0         0112455578998764 47899988754

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=7.8e-15  Score=136.30  Aligned_cols=248  Identities=10%  Similarity=0.017  Sum_probs=164.1

Q ss_pred             CChHHHHHHHHHHhcccCC--Ccc-----cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYV--DMD-----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~--~~~-----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (356)
                      ..++.+.+++.+.+.+...  .|.     .-....++|..+.+...++||+..      ..+-..+|+.||+.++.++.+
T Consensus        37 ~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~------anVqp~SGs~AN~av~~All~  110 (416)
T d1dfoa_          37 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY------ANVQPHSGSQANFAVYTALLE  110 (416)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCc------ceeecccCccHHHHHHHHhcC
Confidence            4568889988776653211  111     122457899999999999999974      245567899999999998865


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCC---CcchHHHHHHhhC--CeeEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCC
Q 018437          140 KWQQKRKEQGKPYDKPNIVTGAN---VQVCWEKFARYFE--VELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGST  213 (356)
Q Consensus       140 ~~~~~~~~~g~~~~~~~vi~s~~---~h~s~~~~~~~~G--~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~  213 (356)
                      +             +++|+.-+.   .|.+....+...|  .+.+..++|+ ++.+|.+++++...+ +|++|++-.  +
T Consensus       111 p-------------GD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~-~~~IDyd~l~~~a~~~kPklIi~G~--S  174 (416)
T d1dfoa_         111 P-------------GDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGF--S  174 (416)
T ss_dssp             T-------------TCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS-SSSBCHHHHHHHHHHHCCSEEEEEC--S
T ss_pred             C-------------CCeeeeccccccccccccccccccCceEEEEecccCC-ccCccHHHHHHHHHHhccceEEecc--c
Confidence            4             577775443   4555443333333  4556666676 478999999998764 888887543  3


Q ss_pred             cccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       214 ~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      ......|++++.++|++.      |.++++|.++-.+++.  ....+--  ++.+|.++.+.||.+.+|.| |++++++.
T Consensus       175 ~y~r~~d~~~~reiad~v------ga~l~~D~aH~~GLIa--~g~~~sP--~~~aDvvt~tThKtlrGPrg-giI~~~~~  243 (416)
T d1dfoa_         175 AYSGVVDWAKMREIADSI------GAYLFVDMAHVAGLVA--AGVYPNP--VPHAHVVTTTTHKTLAGPRG-GLILAKGG  243 (416)
T ss_dssp             SCCSCCCHHHHHHHHHHT------TCEEEEECTTTHHHHH--HTSSCCC--TTTSSEEEEESSSTTCCCSC-EEEEESSC
T ss_pred             ccccccCHHHHHHHHHhc------CceEEcchhhhhccee--ccccCCc--ccccceeeeehhhcccCCCc-eEEEeccc
Confidence            334667899999999999      9999999998554442  1111111  34689999999999999987 78877643


Q ss_pred             C-CCccccccccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          294 D-DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       294 ~-~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      . .+.+.+. ..-++       .++|.+-...+++...+++......++++.++..++|+.|+
T Consensus       244 ~~~~~~~i~-~avfP-------g~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La  298 (416)
T d1dfoa_         244 SEELYKKLN-SAVFP-------GGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMV  298 (416)
T ss_dssp             CHHHHHHHH-HHHTT-------TTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHH-hhhCc-------ccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            1 1111100 01111       22344445567777788888666666667777776666553

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.62  E-value=1.7e-15  Score=143.64  Aligned_cols=240  Identities=15%  Similarity=0.115  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHhhhcCCCC-ccccccc------CCCChHHHHHHHHHHhccc--CCCcccCcchHHHHHHHHHHHHHHhCC
Q 018437           40 EAAYQVINDELMLDGNPR-LNLASFV------TTWMEPECDKLVMASINKN--YVDMDEYPVTTELQNRCVNMIAHLFNT  110 (356)
Q Consensus        40 ~~i~~~~~~~~~~~~~~~-~~l~~~~------~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~le~~~~~~la~l~g~  110 (356)
                      +.|+.... .+..+.+|+ +||+.++      ..+..+.|.++.....+..  ...|....|..++++++.+++.+..+.
T Consensus        15 ~~i~~l~~-~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~   93 (412)
T d1ajsa_          15 VLVFKLIA-DFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSP   93 (412)
T ss_dssp             CHHHHHHH-HHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCH
T ss_pred             ChHHHHHH-HHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCc
Confidence            33555333 334555565 5776663      1123467788765544432  224667779999999999888776655


Q ss_pred             CCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEe--cCCcc
Q 018437          111 PVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL--EEGYY  188 (356)
Q Consensus       111 ~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~--~~~~~  188 (356)
                      +... +...++.|.|++.++..+..++...+.      ..-..+++|++++|+|..+...++..|++++.++.  +++.+
T Consensus        94 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~  166 (412)
T d1ajsa_          94 ALQE-KRVGGVQSLGGTGALRIGAEFLARWYN------GTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKR  166 (412)
T ss_dssp             HHHT-TCEEEEEEEHHHHHHHHHHHHHHHHSS------SSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTT
T ss_pred             cccc-ccceeecccchhhHHHHHHHHHHHHhh------hcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeecccccccc
Confidence            3211 123466788888888777766543210      01123579999999999999999999998666553  34457


Q ss_pred             ccCHHHHHHHHh---hCceEEEEecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC--c
Q 018437          189 VMNPVKAVELVD---ENTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--E  260 (356)
Q Consensus       189 ~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~  260 (356)
                      ..|.+.+++.+.   +++++++++.|+||||.+-   .+++|+++|++|      +++++.|++|..+..+-.....  .
T Consensus       167 ~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~------~~~ii~De~Y~~l~~~~~~~~~~~~  240 (412)
T d1ajsa_         167 GLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR------FLFPFFDSAYQGFASGNLEKDAWAI  240 (412)
T ss_dssp             EECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred             cccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhC------CEEEEecHhhhhhhcCCcccchhhh
Confidence            889988877654   5788999999999999984   578999999999      9999999999876542100000  0


Q ss_pred             ccc-c-CCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          261 WDF-R-LPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       261 ~~~-~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      ... . ....-.+...+.|+++..+.+|+++....
T Consensus       241 ~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~  275 (412)
T d1ajsa_         241 RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAK  275 (412)
T ss_dssp             HHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             hhhhhhcccccccccccccccCCCCCccccccchh
Confidence            000 1 12223333335566666788999988653

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.62  E-value=2.2e-15  Score=144.59  Aligned_cols=232  Identities=13%  Similarity=0.050  Sum_probs=147.4

Q ss_pred             CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc
Q 018437           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV  165 (356)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~  165 (356)
                      .|..+|...+||+.    +++++|.+.       .+++++|+.||..++.++.++             +++|+.... ..
T Consensus        70 ~Y~~dpt~~~lE~~----~a~l~G~e~-------al~~~SGt~An~~a~~~l~~~-------------Gd~Vi~~~~-f~  124 (456)
T d1c7ga_          70 AYAGSENFYHLEKT----VKELFGFKH-------IVPTHQGRGAENLLSQLAIKP-------------GQYVAGNMY-FT  124 (456)
T ss_dssp             CSSSCHHHHHHHHH----HHHHHCCSE-------EEEESSHHHHHHHHHHHHCCT-------------TEEEEESSC-CH
T ss_pred             hccCCchHHHHHHH----HHHHhCCCe-------EEECCCHHHHHHHHHHHhcCC-------------CCeEecCcc-hH
Confidence            46667888888876    788999985       789999999999999987543             456665544 33


Q ss_pred             hHHHHHHhhCCeeEEEEec---------CCccccCHHHHHHHHhhC----ceEEEEecCCCcccc----cCCHHHHHHHH
Q 018437          166 CWEKFARYFEVELKEVKLE---------EGYYVMNPVKAVELVDEN----TICVAAILGSTLTGE----FEDVKLLHDLL  228 (356)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~---------~~~~~~d~~~L~~~i~~~----~~~v~~~~~~~~tG~----~~~i~~I~~i~  228 (356)
                      +........|+.++.+..+         ...+.+|+++|+++|+++    +.++++..++|..|.    .+++++|.++|
T Consensus       125 ~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a  204 (456)
T d1c7ga_         125 TTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMA  204 (456)
T ss_dssp             HHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHH
Confidence            3334445567777666542         124789999999999753    457888888888763    35788999999


Q ss_pred             HHhhhccCCCCcEEEecccccccccccC--CCC--cccc---c---CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcc
Q 018437          229 TKKNEETGWDTPIHVDAASGGFIAPFLY--PDL--EWDF---R---LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (356)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~--~~~--~~~~---~---~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~  298 (356)
                      ++|      |+.+|+|+|+..+...|..  ...  ..++   .   ...+|+++++.||.+++|.| |+++.+++.+...
T Consensus       205 ~~~------~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~  277 (456)
T d1c7ga_         205 STY------GIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSA  277 (456)
T ss_dssp             HHH------TCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHH
T ss_pred             HHc------CCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHH
Confidence            999      9999999997543221110  000  0010   0   23589999999999988777 7887766433321


Q ss_pred             ccccccCCCCCCCCCccccCCCChhHHHHHHHHHHH-hCHHHHHHHHHHHHhccCcc
Q 018437          299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR-LGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~-lg~~G~~~~~~~~~~~a~~l  354 (356)
                      . .......++.. +   .+...+..+.++...+.. .+.+.+++++++...+++.|
T Consensus       278 ~-r~~~~~~~g~~-~---~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L  329 (456)
T d1c7ga_         278 A-KELVVVYEGMP-S---YGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKL  329 (456)
T ss_dssp             H-HHHHHHHTCCT-T---TTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHhccccCCCc-c---cchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            1 00011111111 1   133334445555555444 45666666666665555443

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=1.3e-14  Score=136.37  Aligned_cols=221  Identities=12%  Similarity=0.014  Sum_probs=148.7

Q ss_pred             hcCCCC-cccccccC------CCChHHHHHHHHHHhcccC-CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEe
Q 018437           52 LDGNPR-LNLASFVT------TWMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT  123 (356)
Q Consensus        52 ~~~~~~-~~l~~~~~------~~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t  123 (356)
                      .+.+|. +||+.+..      .++.|.|.+++....+... ..|....|..++++++.+++.+..+...    ....++|
T Consensus        22 ~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~----~~~~~~~   97 (394)
T d2ay1a_          22 ADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSE----TTATLAT   97 (394)
T ss_dssp             HCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGG----GEEEEEE
T ss_pred             CCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccc----cccceec
Confidence            445554 57766531      1334788888877765433 3477777999999999988877655542    1235666


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHh--
Q 018437          124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVD--  200 (356)
Q Consensus       124 ~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~--  200 (356)
                      +||+.+..+++......           ..+++|+++++.++.+...++..|++++.+|... +.+..+.+.+++...  
T Consensus        98 ~~~~~~~~l~~~~~~~~-----------~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~  166 (394)
T d2ay1a_          98 VGGTGALRQALELARMA-----------NPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA  166 (394)
T ss_dssp             EHHHHHHHHHHHHHHHH-----------CTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC
T ss_pred             cCchHHHHHHHHHhhhc-----------CCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhc
Confidence            76666655444433221           1257999999999999999999999999999843 346777777666554  


Q ss_pred             -hCceEEEEecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc--cc-cCCCceEEEE
Q 018437          201 -ENTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW--DF-RLPLVKSINV  273 (356)
Q Consensus       201 -~~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~--~~-~~~~~Ds~~~  273 (356)
                       ++++++++++++||||.+-   .+++|+++|+++      +++++.|.+|..+..+--......  .. .....-.+..
T Consensus       167 ~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~------~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s  240 (394)
T d2ay1a_         167 KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT------GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS  240 (394)
T ss_dssp             CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             ccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcc------eEEEEEeccchhhcccccccchhhhhhhhhccccccccc
Confidence             4577888899999999984   478899999999      999999999988654210000000  00 1122333333


Q ss_pred             cCCcCCCCCcCeeEEEEeCC
Q 018437          274 SGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       274 ~~hK~l~~P~g~g~l~~~~~  293 (356)
                      .+.++....+.+|++.....
T Consensus       241 ~sk~~~~~G~R~G~~~~~~~  260 (394)
T d2ay1a_         241 CSKNFGIYRERTGCLLALCA  260 (394)
T ss_dssp             CTTTTTCGGGCEEEEEEECS
T ss_pred             ccccccCCcccccchhhchh
Confidence            34556666788999988654

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=8.8e-15  Score=137.85  Aligned_cols=218  Identities=14%  Similarity=0.038  Sum_probs=146.7

Q ss_pred             ccccccc---C---CCChHHHHHHHHHHhcccC-CCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHH
Q 018437           58 LNLASFV---T---TWMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        58 ~~l~~~~---~---~~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (356)
                      +||+.+.   +   .+..+.|.+++....+... ..|....|..++++++.+++.+..+....+ .....+.|.||+.+.
T Consensus        29 InL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  107 (396)
T d2q7wa1          29 INLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALIND-KRARTAQTPGGTGAL  107 (396)
T ss_dssp             EESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-TCEEEEEESHHHHHH
T ss_pred             EEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccc-cceeeeccchHHHHH
Confidence            5666552   1   1334788888776665433 347777899999999999888766654211 122345677777666


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHh---hCceEE
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVD---ENTICV  206 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~---~~~~~v  206 (356)
                      .+++......           ..++.|++++|+|+.+...++..|++++.+|... +++..+...+.+...   ++++++
T Consensus       108 ~l~~~~l~~~-----------~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  176 (396)
T d2q7wa1         108 RVAADFLAKN-----------TSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVL  176 (396)
T ss_dssp             HHHHHHHHHH-----------SCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEE
T ss_pred             HHHHHHHhhc-----------ccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHhccCcEEE
Confidence            5555444321           1257999999999999999999999999999853 346677777666553   467899


Q ss_pred             EEecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccc-cc-CCCceEEEEc-CCcCCC
Q 018437          207 AAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR-LPLVKSINVS-GHKYGL  280 (356)
Q Consensus       207 ~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~-~~~~Ds~~~~-~hK~l~  280 (356)
                      ++++|+||||.+-   .+++|.++|+++      ++++++|++|..+..+.-....... .. ...-..+..+ +.|+..
T Consensus       177 ~~~~P~NPTG~~~s~e~~~~l~~la~~~------~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~  250 (396)
T d2q7wa1         177 FHGCCHNPTGIDPTLEQWQTLAQLSVEK------GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGL  250 (396)
T ss_dssp             EECSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTC
T ss_pred             EecCCcCCcCeecCHHHHHHHHHHHhcC------CeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccc
Confidence            9999999999984   567899999999      9999999999876542100000000 00 1111233333 445566


Q ss_pred             CCcCeeEEEEeCC
Q 018437          281 VYAGVGWVVWRTK  293 (356)
Q Consensus       281 ~P~g~g~l~~~~~  293 (356)
                      ..+.+|++.....
T Consensus       251 ~G~R~G~~~~~~~  263 (396)
T d2q7wa1         251 YNERVGACTLVAA  263 (396)
T ss_dssp             GGGCCEEEEEECS
T ss_pred             cCCCccccccchh
Confidence            6788999988653

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.59  E-value=2.1e-15  Score=137.08  Aligned_cols=203  Identities=14%  Similarity=0.071  Sum_probs=133.1

Q ss_pred             CCcccccccCCCChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHH
Q 018437           56 PRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (356)
Q Consensus        56 ~~~~l~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (356)
                      |..+|.+-.+++.+|.|.++|.++.......|..    .++.+++++++++++|.+.      .+++|+|||+||+.++.
T Consensus         3 ~~~~f~s~n~~g~~P~v~~A~~~a~~~~~~~~~~----~~~~~~l~~~la~~~g~~~------~v~f~~sGt~An~~a~~   72 (345)
T d1v72a1           3 PALGFSSDNIAGASPEVAQALVKHSSGQAGPYGT----DELTAQVKRKFCEIFERDV------EVFLVPTGTAANALCLS   72 (345)
T ss_dssp             CCCBCSCGGGCCCCHHHHHHHHHTTSSCCCSTTC----SHHHHHHHHHHHHHHTSCC------EEEEESCHHHHHHHHHH
T ss_pred             CCcCcCCCCCCCCCHHHHHHHHHHhccCccccCC----CHHHHHHHHHHHHHHCCCc------EEEECCchHHHHHHHHH
Confidence            4445555556667889999998765433233333    3455678888999999864      37899999999999998


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHH---hhCCeeEEEEecCCccccCHHHHHHHHhhC------c-eE
Q 018437          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR---YFEVELKEVKLEEGYYVMNPVKAVELVDEN------T-IC  205 (356)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~-~~  205 (356)
                      +++..             +..+++....|.+......   ..+..+..++.+. .+.+|++.+++.+.+.      + ..
T Consensus        73 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~  138 (345)
T d1v72a1          73 AMTPP-------------WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPA  138 (345)
T ss_dssp             TSCCT-------------TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEE
T ss_pred             HHHhc-------------CCccccccccceeeechhhHHHhcCcccccccccc-cccccHHHhhhhhcccccccccccce
Confidence            76542             4567777788877654433   3455566665554 4899999999999753      2 23


Q ss_pred             EEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC
Q 018437          206 VAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY  282 (356)
Q Consensus       206 v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P  282 (356)
                      ++.....++.|..   ++++++.++|+++      ++++|+|++++++..+...............+.++.+.+|.+.. 
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  211 (345)
T d1v72a1         139 CVSITQATEVGSIYTLDEIEAIGDVCKSS------SLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVL-  211 (345)
T ss_dssp             EEEEESSCTTSCCCCHHHHHHHHHHHHHT------TCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCS-
T ss_pred             eeeeeccccccccccchhhhhHHHHHHhc------CceeeecccccceeccccccCHHHhhccccccccccCccccccc-
Confidence            3444444554543   6678889999999      99999999998765543222222222223456667667765543 


Q ss_pred             cCeeEEEE
Q 018437          283 AGVGWVVW  290 (356)
Q Consensus       283 ~g~g~l~~  290 (356)
                       ..+..+.
T Consensus       212 -~~~~~~~  218 (345)
T d1v72a1         212 -AAEAIVL  218 (345)
T ss_dssp             -SCEEEEE
T ss_pred             -ccccccc
Confidence             3344444

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.59  E-value=2.5e-14  Score=134.81  Aligned_cols=279  Identities=13%  Similarity=0.017  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHhhhcCCCCcccccccCCCChHHHHHHHHHHhcccC--CC-----cccCcchHHHHHHHHHHHHHHhCCCC
Q 018437           40 EAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNY--VD-----MDEYPVTTELQNRCVNMIAHLFNTPV  112 (356)
Q Consensus        40 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~i~~~~~~~~--~~-----~~~~~~~~~le~~~~~~la~l~g~~~  112 (356)
                      .++.+.+.+...+..+ .++|.. .-+..++.+.+++.+.+++..  +.     |..-....++|..+.+...++||++.
T Consensus        17 ~ei~~~i~~e~~rq~~-~l~LIa-SEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~   94 (470)
T d1rv3a_          17 AEVYDIIKKESNRQRV-GLELIA-SENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDP   94 (470)
T ss_dssp             HHHHHHHHHHHHHHHS-SEECCT-TCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHHHHHc-CceEec-CCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCh
Confidence            3566666655443211 122211 122456888998877765321  11     11223668999999999999999985


Q ss_pred             CCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEec---CCCcchHHH-------HHHhhCCeeEEEE
Q 018437          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG---ANVQVCWEK-------FARYFEVELKEVK  182 (356)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s---~~~h~s~~~-------~~~~~G~~v~~v~  182 (356)
                      +.  ....+-..+|+.||+.++.++.++             +++|+..   .-.|.+.-.       ...-...+....+
T Consensus        95 ~~--~~anVqp~SGs~An~av~~all~p-------------gD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~  159 (470)
T d1rv3a_          95 QC--WGVNVQPYSGSPANFAVYTALVEP-------------HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYK  159 (470)
T ss_dssp             TT--EEEECCCSSHHHHHHHHHHHHTCT-------------TCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEEC
T ss_pred             hh--ccccccccCCccHHHHHHHHhcCC-------------CCeEeeeccccCCcccccccccCCCcccccceeEeeEEE
Confidence            21  122356668999999999988764             5677653   334544321       1111235677888


Q ss_pred             ecCCccccCHHHHHHHHhh-CceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc
Q 018437          183 LEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW  261 (356)
Q Consensus       183 ~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~  261 (356)
                      ++++++.+|.+++++...+ +|++|++-...+  -...|++++.++|++.      |.++++|.++-.+++.  ....+-
T Consensus       160 v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y--~r~~d~~~~reIad~v------ga~l~~D~aH~aGLIA--~g~~~s  229 (470)
T d1rv3a_         160 VNPDTGYIDYDRLEENARLFHPKLIIAGTSCY--SRNLDYGRLRKIADEN------GAYLMADMAHISGLVV--AGVVPS  229 (470)
T ss_dssp             BCTTTCSBCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHT------TCEEEEECTTTHHHHH--HTSSCC
T ss_pred             EecccCcccHHHHHHHHHhhCcceEeechhhc--cccCCHHHHHHHHhcc------CCeEEecchhhhhhcc--ccccCC
Confidence            8887799999999998865 788877443333  3556899999999999      9999999998554431  111111


Q ss_pred             cccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCc-----c----ccc--cc-cCCCCCCCCCccccCCCChhHHHHHH
Q 018437          262 DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP-----D----ELV--FH-INYLGSDQPTFTLNFSKGSSQIIAQY  329 (356)
Q Consensus       262 ~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~-----~----~~~--~~-~~~~~~~~~~~~~~~tr~~~~~~~~~  329 (356)
                      -  ++.+|.++.+.||.+.+|.| |+++++++..-.     +    .+.  .+ +-+       +.++|.+-...++++.
T Consensus       230 P--l~~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avF-------Pg~qggph~~~IAa~A  299 (470)
T d1rv3a_         230 P--FEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESLINSAVF-------PGLQGGPHNHAIAGVA  299 (470)
T ss_dssp             G--GGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHHHHHHHHT-------TTTCCSCCHHHHHHHH
T ss_pred             h--hheeeeeeeehhhhccCCcc-eEEEEccccccccccccchhHHHHHHHHhhhcC-------ccccccchhhHHHHHH
Confidence            1  24689999999999999998 888887641100     0    000  00 001       2234555566677777


Q ss_pred             HHHHHhCHHHHHHHHHHHHhccCccc
Q 018437          330 YQFIRLGFEEITFTFISSLKVCPFLV  355 (356)
Q Consensus       330 ~~l~~lg~~G~~~~~~~~~~~a~~l~  355 (356)
                      .+++......++++.++..++|+.|+
T Consensus       300 va~~ea~~~~fk~Ya~qvv~NAk~La  325 (470)
T d1rv3a_         300 VALKQAMTPEFKEYQRQVVANCRALS  325 (470)
T ss_dssp             HHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            78877655555666666666665543

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.57  E-value=1.9e-14  Score=134.42  Aligned_cols=188  Identities=12%  Similarity=0.063  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcC
Q 018437           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (356)
Q Consensus        70 ~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (356)
                      .+-.+++.+.+..+  .+..++...++|++    +++++|.+.       .+++++||.|+.++++++...         
T Consensus        12 ~~~~~~v~~~l~~~--~~~~G~~v~~fE~~----~~~~~g~k~-------ai~~~Sgt~Al~~al~al~~~---------   69 (371)
T d2fnua1          12 KEDKKAVLEVLNSK--QLTQGKRSLLFEEA----LCEFLGVKH-------ALVFNSATSALLTLYRNFSEF---------   69 (371)
T ss_dssp             HHHHHHHHHHHTSS--CCSSSHHHHHHHHH----HHHHHTCSE-------EEEESCHHHHHHHHHHHSSCC---------
T ss_pred             HHHHHHHHHHHcCC--CccCCHHHHHHHHH----HHHHHCcCe-------EEEEecHHHHHHHHHHHhccc---------
Confidence            34455677777643  33456777788876    888889975       789999999999999876321         


Q ss_pred             CCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHH
Q 018437          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT  229 (356)
Q Consensus       150 ~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~  229 (356)
                       ..++++|++|..++.+...++...|+++++++++++ ..++.+++++++++++++|+++   +..|...|+++|.++|+
T Consensus        70 -~~~~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~-~~~~~~~~~~~~~~~t~avi~v---h~~G~~~~~~~i~~~~~  144 (371)
T d2fnua1          70 -SADRNEIITTPISFVATANMLLESGYTPVFAGIKND-GNIDELALEKLINERTKAIVSV---DYAGKSVEVESVQKLCK  144 (371)
T ss_dssp             -CTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTT-SSBCGGGSGGGCCTTEEEEEEE---CGGGCCCCHHHHHHHHH
T ss_pred             -CCCCCeeecccccccccceeeeccCccccccccccc-ccccchhhhhhccchhhccccc---ccccccccccccccccc
Confidence             123458999999999999999999999999999986 5677788999999999998855   46799999999999999


Q ss_pred             HhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCC
Q 018437          230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~  295 (356)
                      ++      +++++.|+|++.+..  ....  ..-....+..+++.+.|.+.+.. .|++++.+++.
T Consensus       145 ~~------~i~lIEDaaqa~Ga~--~~~~--~~G~~g~~~~~Sf~~~K~l~~g~-GG~i~t~~~~~  199 (371)
T d2fnua1         145 KH------SLSFLSDSSHALGSE--YQNK--KVGGFALASVFSFHAIKPITTAE-GGAVVTNDSEL  199 (371)
T ss_dssp             HH------TCEEEEECTTCTTCE--ETTE--ETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHH
T ss_pred             cc------chhhccchhhccCce--eccc--cCCcccccccccccccccccccc-ceEEEeechhh
Confidence            99      999999999986544  2211  11123456777888899986654 47887766543

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.56  E-value=5.4e-14  Score=133.14  Aligned_cols=228  Identities=12%  Similarity=0.049  Sum_probs=149.5

Q ss_pred             HHhhhcCCCC-ccccccc---CC---CChHHHHHHHHHHhccc--CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCC
Q 018437           48 DELMLDGNPR-LNLASFV---TT---WMEPECDKLVMASINKN--YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA  118 (356)
Q Consensus        48 ~~~~~~~~~~-~~l~~~~---~~---~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~  118 (356)
                      +.+..+.+|. +||+.+.   +.   +..+.|.++.....+..  ...|....|..++++++.+++.+..+....+ ...
T Consensus        21 ~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~-~~~   99 (412)
T d1yaaa_          21 QRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQE-DRV   99 (412)
T ss_dssp             HHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-TCE
T ss_pred             HHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccc-cce
Confidence            4444566665 6776553   11   22367777765443322  2346677799999999888887765543211 112


Q ss_pred             CeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEec-CCccccCHHHHHH
Q 018437          119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVE  197 (356)
Q Consensus       119 ~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~  197 (356)
                      .++.+.|++.++..++......           ..+++|++++|+++.+...++..|++++.+|+. ++++..|.+.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~-----------~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  168 (412)
T d1yaaa_         100 ISVQSLSGTGALHISAKFFSKF-----------FPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLN  168 (412)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHH-----------CTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHH
T ss_pred             eEEecccchhHHHHHHHHHhcc-----------CCCCEEecccccCchhHHHHHHcCCceecccccccccccccchhhhc
Confidence            2333444444444443322211           125799999999999999999999999999984 3458899999888


Q ss_pred             HHhh---CceEEEEecCCCcccccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCC--ccc----ccC
Q 018437          198 LVDE---NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWD----FRL  265 (356)
Q Consensus       198 ~i~~---~~~~v~~~~~~~~tG~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~----~~~  265 (356)
                      .+..   +++++++++|+||||.+-   .+++|.++|+++      +++++.|++|..+..+-.....  ...    ...
T Consensus       169 ~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~------~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  242 (412)
T d1yaaa_         169 AIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK------NHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST  242 (412)
T ss_dssp             HHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT
T ss_pred             ccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccC------CEEEeecceeeecccCCcccchhhhhhhhhcccc
Confidence            8863   567899999999999984   578899999999      9999999999876542000000  000    001


Q ss_pred             CCceEEEEcCCc-CCCCCcCeeEEEEeCC
Q 018437          266 PLVKSINVSGHK-YGLVYAGVGWVVWRTK  293 (356)
Q Consensus       266 ~~~Ds~~~~~hK-~l~~P~g~g~l~~~~~  293 (356)
                      ..--.+..|..| +++..+.+|++++..+
T Consensus       243 ~~~~i~~~s~SK~~~~~G~RiG~~~~~~~  271 (412)
T d1yaaa_         243 VSPVFVCQSFAKNAGMYGERVGCFHLALT  271 (412)
T ss_dssp             TCCEEEEEECTTTSCCGGGCEEEEEEECC
T ss_pred             CCCeEEEEecCCccccCcCceEEEEEchh
Confidence            111234456666 5667899999998764

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=5.3e-14  Score=130.40  Aligned_cols=166  Identities=15%  Similarity=0.030  Sum_probs=125.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCC-eEEecCCCcchHHHHHHhhCCe
Q 018437           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP-NIVTGANVQVCWEKFARYFEVE  177 (356)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~-~vi~s~~~h~s~~~~~~~~G~~  177 (356)
                      ++++++++.+|+++     ..+++|+|+++++.+++.++..+             ++ .|+++.|+|..+...++..|.+
T Consensus        60 ~Lr~~ia~~~gv~p-----e~I~it~Gs~eai~~~~~~~~~p-------------gd~~Vl~~~P~y~~~~~~~~~~g~~  121 (354)
T d1fg7a_          60 AVIENYAQYAGVKP-----EQVLVSRGADEGIELLIRAFCEP-------------GKDAILYCPPTYGMYSVSAETIGVE  121 (354)
T ss_dssp             HHHHHHHHHHTSCG-----GGEEEESHHHHHHHHHHHHHCCT-------------TTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred             HHHHHHHHHhCCCh-----HHeeeccCchHHHHHHHHHhhcc-------------ccccccccccccccchhhhhccCce
Confidence            56777999999987     35999999999999999988643             34 6888999999999999999999


Q ss_pred             eEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCC
Q 018437          178 LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP  257 (356)
Q Consensus       178 v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~  257 (356)
                      ++.++.+++ +.+|++++++++. ++++|+++.||||||.+.+-+++..++...+.    +.++++|.+|..+..+.   
T Consensus       122 v~~~~~~~~-~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~----~~~~iidd~~~~f~~~~---  192 (354)
T d1fg7a_         122 CRTVPTLDN-WQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG----KAIVVADEAYIEFCPQA---  192 (354)
T ss_dssp             EEECCCCTT-SCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT----TCEEEEECTTGGGSGGG---
T ss_pred             eeccccccc-cccchhhhhhccc-ccceeeccCCCccceeEeeecccccccccccc----cccccccccchhhcccc---
Confidence            999998764 9999999998874 68999999999999999776665555443321    67888888876644321   


Q ss_pred             CCcccccCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          258 DLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       258 ~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ..........-..+.-|+.|.++ +...+|+++..
T Consensus       193 ~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~  227 (354)
T d1fg7a_         193 SLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN  227 (354)
T ss_dssp             CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC
T ss_pred             ccchhhcccccceEEeCCccccCCCcccccccccc
Confidence            11111111222344568999865 66899999764

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.53  E-value=6.9e-14  Score=130.53  Aligned_cols=183  Identities=10%  Similarity=0.069  Sum_probs=131.7

Q ss_pred             HHHHHHhcccCCCcc-cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 018437           74 KLVMASINKNYVDMD-EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY  152 (356)
Q Consensus        74 ~~i~~~~~~~~~~~~-~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~  152 (356)
                      +++.+.++.++  .+ .++...++|++    +++++|...       .+++++||.|+.+|++++.-            .
T Consensus         5 ~~~~~~l~~~~--~~~~G~~~~~fE~~----~~~~~~~~~-------~~~~~SgT~Al~lal~~l~~------------~   59 (374)
T d1o69a_           5 KYIEEVFKSNY--IAPLGEFVNRFEQS----VKDYSKSEN-------ALALNSATAALHLALRVAGV------------K   59 (374)
T ss_dssp             HHHHHHHHHTT--TSCTTHHHHHHHHH----HHHHHCCSE-------EEEESCHHHHHHHHHHHTTC------------C
T ss_pred             HHHHHHHhcCC--cCCCCHHHHHHHHH----HHHHHCcCe-------EEEeCCHHHHHHHHHHHcCC------------C
Confidence            45566665442  22 36677788877    788888874       78999999999999987621            1


Q ss_pred             CCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHH--HHHHhhCceEEEEecCCCcccccCCHHHHHHHHHH
Q 018437          153 DKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKA--VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK  230 (356)
Q Consensus       153 ~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L--~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~  230 (356)
                      .+++|++|..+|.+...++...|+.+++++++++...++++..  +..+.+++++|+++   +..|...++++|.++|++
T Consensus        60 ~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~---~~~G~~~d~~~i~~~~~~  136 (374)
T d1o69a_          60 QDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT---HLYGNAAKMDEIVEICKE  136 (374)
T ss_dssp             TTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCCCCHHHHHHHHHH
T ss_pred             CcCEEEeCCcchHhhHHHHhhccceeEecccccccccccccccccchhccccccccccc---ccccchhhhHHHHHHhhc
Confidence            2579999999999999999999999999999875445555433  35556678888754   446889999999999999


Q ss_pred             hhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCCCC
Q 018437          231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (356)
Q Consensus       231 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~  295 (356)
                      +      +++++-|+|++.+..  ......-.  ...+-.+++.+.|.+.+.. .|++++.+++.
T Consensus       137 ~------~i~vIED~a~a~g~~--~~~~~~G~--~gd~~~fSf~~~K~l~tge-GG~i~tnn~~~  190 (374)
T d1o69a_         137 N------DIVLIEDAAEALGSF--YKNKALGT--FGEFGVYSYNGNKIITTSG-GGMLIGKNKEK  190 (374)
T ss_dssp             T------TCEEEEECTTCTTCE--ETTEETTS--SSSEEEEECCTTSSSCCSS-CEEEEESCHHH
T ss_pred             c------Ccchhhhhhhhhcce--ECCeecCC--CCceEEEeccCcccccccc-ceeehhhhHHH
Confidence            9      999999999986543  22111111  2234445555668886654 48888876544

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=6.8e-14  Score=134.55  Aligned_cols=186  Identities=14%  Similarity=0.095  Sum_probs=128.8

Q ss_pred             CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc
Q 018437           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV  165 (356)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~  165 (356)
                      .|...+...+||+.    +++++|.+.       .+++++|++||..++.+++.+......    ......++.+...|.
T Consensus        69 ~Y~~~~~~~~le~~----~a~l~G~~~-------~~~~~sGt~A~~~a~~~~~~~g~~~~~----~~~~~~i~~~~~~~~  133 (467)
T d2v1pa1          69 AFSGSRSYYALAES----VKNIFGYQY-------TIPTHQGRGAEQIYIPVLIKKREQEKG----LDRSKMVAFSNYFFD  133 (467)
T ss_dssp             CSSSCHHHHHHHHH----HHHHTCCSE-------EEEECSSTTTHHHHHHHHHHHHHHHHC----CCTTTCEEEESSCCH
T ss_pred             hhcCCchHHHHHHH----HHHHHCCCE-------EEECCCCHHHHHHHHHHHhhccceEec----CCCCcEEEEeccccc
Confidence            35566777777755    899999975       789999999999999999876433210    111224566666677


Q ss_pred             hHHHHHHhhCCeeEEEEecCC---------ccccCHHHHHHHHhh----CceEEEEecCCCcccc-c---CCHHHHHHHH
Q 018437          166 CWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDE----NTICVAAILGSTLTGE-F---EDVKLLHDLL  228 (356)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~-~---~~i~~I~~i~  228 (356)
                      .....+...|+.++.++.+..         .+.+|+++|++.+.+    .+.++++...++..|. +   +++++|.++|
T Consensus       134 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia  213 (467)
T d2v1pa1         134 TTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIA  213 (467)
T ss_dssp             HHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHH
T ss_pred             ccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHH
Confidence            777788888999988887531         367999999999974    3456666666555543 2   5789999999


Q ss_pred             HHhhhccCCCCcEEEeccccccccccc-------CCCCccccc---CCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          229 TKKNEETGWDTPIHVDAASGGFIAPFL-------YPDLEWDFR---LPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~-------~~~~~~~~~---~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      ++|      |+++|+|+|+..+...+.       ......++.   ...+|+++++.||.+++|.| |+++.+++
T Consensus       214 ~~~------g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~  281 (467)
T d2v1pa1         214 KKY------DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDD  281 (467)
T ss_dssp             HHT------TCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSG
T ss_pred             HHc------CCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecch
Confidence            999      999999999754322100       000000110   23589999999999988765 66666554

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.52  E-value=1.6e-13  Score=128.82  Aligned_cols=258  Identities=11%  Similarity=-0.004  Sum_probs=149.3

Q ss_pred             CChHHHHHHHHHHhcccC--CCcc-----cCcchHHHHHHHHHHHHHHhCCCCCCCCCCC--eEEeCChhHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNY--VDMD-----EYPVTTELQNRCVNMIAHLFNTPVADDKTAV--GVGTVGSSEAIMLAGLAF  137 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~--~~~~-----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~--~~~t~Ggt~a~~~al~~~  137 (356)
                      ..++.+.+++.+.+.+..  +.|.     .-....++|..+++...++||++..    .|  .+-..+|+.||+.++.++
T Consensus        38 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a----~w~vNVqp~SGs~An~av~~al  113 (463)
T d2a7va1          38 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA----QWGVNVQPYSGSPANLAVYTAL  113 (463)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTT----TEEEECCCSSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCch----hccCCccccccHHHHHHHHHHH
Confidence            456888888877665321  1111     1224578999999999999999862    23  355668999999999888


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEec---CCCcchHHH-----HHHhhCC--eeEEEEecCCccccCHHHHHHHHhh-CceEE
Q 018437          138 KRKWQQKRKEQGKPYDKPNIVTG---ANVQVCWEK-----FARYFEV--ELKEVKLEEGYYVMNPVKAVELVDE-NTICV  206 (356)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~vi~s---~~~h~s~~~-----~~~~~G~--~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v  206 (356)
                      .++             +++|+.-   .-.|.+...     .....|.  ++...+++++++.+|.+++++...+ +|++|
T Consensus       114 l~p-------------gD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklI  180 (463)
T d2a7va1         114 LQP-------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLI  180 (463)
T ss_dssp             CCS-------------CEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEE
T ss_pred             cCC-------------CceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceE
Confidence            654             4566543   334544321     1222333  3445556766689999999998875 78887


Q ss_pred             EEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCee
Q 018437          207 AAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (356)
Q Consensus       207 ~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g  286 (356)
                      ++-...+  -...|++++.++|++.      |.++++|+++-.+++.  ....+--  ++.+|.++.+.||.+.+|.| |
T Consensus       181 i~G~S~y--~r~~d~~~~reIad~v------ga~l~~D~aH~aGLIA--~g~~~sP--~~~aDvvt~tTHKTlrGPrg-G  247 (463)
T d2a7va1         181 IAGTSAY--ARLIDYARMREVCDEV------KAHLLADMAHISGLVA--AKVIPSP--FKHADIVTTTTHKTLRGARS-G  247 (463)
T ss_dssp             EECCSSC--CSCCCHHHHHHHHHHT------TCEEEEECGGGHHHHH--TTSSCCG--GGTCSEEEEESSGGGCSCSC-E
T ss_pred             Eeccccc--ccccCHHHHHHHhhcc------cceEEechhhhhHHhh--hhhhcCh--hhhhhhhhchhhhhhcCCCc-e
Confidence            7443333  3456899999999999      9999999998555442  2211111  34689999999999999986 7


Q ss_pred             EEEEeCCCCCccc---cccccCCCCCC--CCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCcc
Q 018437          287 WVVWRTKDDLPDE---LVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFL  354 (356)
Q Consensus       287 ~l~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~l  354 (356)
                      +++++++......   -.....|....  ..-+.++|.+-...++++..+++......+++..++.+++|+.|
T Consensus       248 iIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~L  320 (463)
T d2a7va1         248 LIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAM  320 (463)
T ss_dssp             EEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            8888763110000   00000000000  00122345555666777777776654444455555555555444

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.52  E-value=6.4e-14  Score=130.62  Aligned_cols=159  Identities=17%  Similarity=0.117  Sum_probs=126.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++.|.+.       .+++++|..|+..++.++.++             +++|+++...|.....
T Consensus        58 nPT~~~LE~~----la~LEg~~~-------a~~~~SGmaAi~~~l~~l~~~-------------Gd~vl~~~~~Yg~t~~  113 (392)
T d1gc0a_          58 NPTLNLLEAR----MASLEGGEA-------GLALASGMGAITSTLWTLLRP-------------GDEVLLGNTLYGCTFA  113 (392)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESSCCSHHHH
T ss_pred             ChHHHHHHHH----HHHHhCCcc-------eeehhhHHHHHHHHHHhhccC-------------CCeeecccccchhhhh
Confidence            4566666655    899988864       678888999998888887543             6799999888877555


Q ss_pred             HHH----hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 FAR----YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~~~----~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .++    .+|+++.+++..      |+++++++++++|++|++-.|+||+..+.||++|+++||++      |++++||.
T Consensus       114 l~~~~~~~~Gi~~~~~d~~------d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~------g~~~vvDn  181 (392)
T d1gc0a_         114 FLHHGIGEFGVKLRHVDMA------DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH------GATVVVDN  181 (392)
T ss_dssp             HHHHTGGGGTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGG------TCEEEEEC
T ss_pred             hhhhhhccCCcccccCCcc------CHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhc------CCEEEEec
Confidence            444    458888887642      68999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCC--cCeeEEEEeC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWRT  292 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P--~g~g~l~~~~  292 (356)
                      .++.++.  +.   +++   .|+|.+.-|..|++.+.  .-.|+++.++
T Consensus       182 T~atP~~--~~---Pl~---~GaDivihS~TKyi~Ghsd~~~G~v~~~~  222 (392)
T d1gc0a_         182 TYCTPYL--QR---PLE---LGADLVVHSATKYLSGHGDITAGIVVGSQ  222 (392)
T ss_dssp             TTTHHHH--CC---GGG---GTCSEEEEETTTTTTCSSSCCCEEEEECH
T ss_pred             CccCccc--cC---hHH---hCCCEEEEecceeecCCcccccccccchh
Confidence            9976544  22   233   38999999999998653  3346666654

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.51  E-value=2.1e-13  Score=131.00  Aligned_cols=184  Identities=13%  Similarity=0.044  Sum_probs=121.5

Q ss_pred             CcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc
Q 018437           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV  165 (356)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~  165 (356)
                      .|...+...++|+.    +++++|.+.       +++|++||+||..++.+++++....    |  ..+..++.+...|.
T Consensus        70 ~y~~~~~~~~le~~----~a~l~g~~~-------~~~~~sGt~A~~~a~~~~~~~g~~~----~--~~~~~~i~~~~h~~  132 (465)
T d1ax4a_          70 AYAGSRNYYDLKDK----AKELFNYDY-------IIPAHQGRGAENILFPVLLKYKQKE----G--KAKNPVFISNFHFD  132 (465)
T ss_dssp             CSSSCHHHHHHHHH----HHHHHCCCE-------EEEESSHHHHHHHHHHHHHHHHHHT----T--CCSSCEEEESSCCH
T ss_pred             hhccChHHHHHHHH----HHHHHCCCE-------EEECCCcHHHHHHHHHHHHHHHHhc----C--CCCCeEEeccchhh
Confidence            35556666666655    788899975       7999999999999999998764321    1  11234556655556


Q ss_pred             hHHHHHHhhCCeeEEEEe---------cCCccccCHHHHHHHHhh----CceEEEEecCCCcccc-c---CCHHHHHHHH
Q 018437          166 CWEKFARYFEVELKEVKL---------EEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGE-F---EDVKLLHDLL  228 (356)
Q Consensus       166 s~~~~~~~~G~~v~~v~~---------~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~-~---~~i~~I~~i~  228 (356)
                      ++.......|..++.++.         ++..+.+|+++|+++|.+    .+.++++...++..|. +   +++++|.++|
T Consensus       133 t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~  212 (465)
T d1ax4a_         133 TTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA  212 (465)
T ss_dssp             HHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHH
Confidence            666666677887766543         223488999999999975    2334444444444333 2   4678999999


Q ss_pred             HHhhhccCCCCcEEEecccccccccccC-------CCCccccc---CCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          229 TKKNEETGWDTPIHVDAASGGFIAPFLY-------PDLEWDFR---LPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~-------~~~~~~~~---~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      ++|      |+++|+|+|+..+...+..       .....++.   ...+|.++++.||.+++|. .|+++.++.
T Consensus       213 ~~~------g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~-~g~l~~~~~  280 (465)
T d1ax4a_         213 KQH------GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI-GGLVAIRDN  280 (465)
T ss_dssp             HHH------TCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS-CEEEEESSC
T ss_pred             HHc------CCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc-ceeEeecch
Confidence            999      9999999998643321100       00000110   2247999999999886555 488887654

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=3.7e-13  Score=123.64  Aligned_cols=185  Identities=16%  Similarity=0.031  Sum_probs=129.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      ++++.+.+++.+.++....++...++..++++++.+++.+. ++++     .++++|+|+++++.+++.+          
T Consensus        32 ~~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~-~v~~-----d~I~it~G~~~~l~~l~~~----------   95 (334)
T d2f8ja1          32 PFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD-FLSK-----NNVSVGNGADEIIYVMMLM----------   95 (334)
T ss_dssp             CCCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCS-SCCG-----GGEEEEEHHHHHHHHHHHH----------
T ss_pred             CCCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhccc-CCCc-----ceEEecCcchhHHHHHhhh----------
Confidence            34567888888888765444334456677777765554332 3443     3589999999887765432          


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHH
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~  226 (356)
                             .++|+++.|+|..+...++.+|++++.||++++ +..+     ++..++++++++++|+||||.+.+.++|.+
T Consensus        96 -------~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~-~~~~-----~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~  162 (334)
T d2f8ja1          96 -------FDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD-LRIP-----EVNVGEGDVVFIPNPNNPTGHVFEREEIER  162 (334)
T ss_dssp             -------SSEEEECSSCCHHHHHHHHHHTCCEEECCCCTT-SCCC-----CCCCCTTEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             -------ccccccccccccccccchhccCCcccccccccc-cccc-----ccccccceEEEecccccccceeecHHHhhc
Confidence                   368999999999999999999999999999875 3333     233457889999999999999999888877


Q ss_pred             HHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCC-CCcCeeEEEEe
Q 018437          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (356)
Q Consensus       227 i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l~~~  291 (356)
                      ++ ++      ++++++|.+|..+..  . .. ........--.+..|+.|.++ ....+|+++..
T Consensus       163 ~~-~~------~~~ii~Dd~~~~~~~--~-~~-~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~  217 (334)
T d2f8ja1         163 IL-KT------GAFVALDEAYYEFHG--E-SY-VDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS  217 (334)
T ss_dssp             HH-TT------TCEEEEECTTGGGTC--C-CC-GGGGGTCSSEEEEEESTTTSSCTTTCEEEEEEC
T ss_pred             cc-cc------eeEEeecccchhhcc--c-cc-ccccccCceEEEEecCccccchhhhhhhhcccc
Confidence            64 46      799999998865322  1 11 111112222345567899755 55799999874

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.7e-13  Score=128.41  Aligned_cols=181  Identities=10%  Similarity=-0.041  Sum_probs=133.0

Q ss_pred             hHHHHHHHHHHhcccCCCccc---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           69 EPECDKLVMASINKNYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +|.+.+++.+++.....+...   ..+...+..++.+.+++++|.+.       .++.++|.+||..++.++..+     
T Consensus        54 ~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~-------al~~~SG~~an~~~i~al~~~-----  121 (383)
T d1bs0a_          54 HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR-------ALLFISGFAANQAVIAAMMAK-----  121 (383)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT-----
T ss_pred             CHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCCc-------eEEecccchhhHHHHHhhcCC-----
Confidence            477888877777654333222   22444555566677999999975       788889999999999887543     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh---CceEEEEecCCCcccccCCHH
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFEDVK  222 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~i~  222 (356)
                              ++.|++....|.++...++..+.+++.++-      -|+++|++.+.+   +..+|++....+..|.+.|++
T Consensus       122 --------~d~v~~d~~~h~si~~g~~~~~~~~~~~~h------nd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~  187 (383)
T d1bs0a_         122 --------EDRIAADRLSHASLLEAASLSPSQLRRFAH------NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLA  187 (383)
T ss_dssp             --------TCEEEEETTCCHHHHHHHHTSSSEEEEECT------TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHH
T ss_pred             --------CceEEeeccccHHHhhccccCCCcceEecc------hHHHHHHHHhcccCCCceEEEecCCCCCCCcccchh
Confidence                    578999999999999999988887766552      377888888754   467888899999999999999


Q ss_pred             HHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC
Q 018437          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY  282 (356)
Q Consensus       223 ~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P  282 (356)
                      +|.++|++|      +++++||+|++.++++.-..- .........|.+..+.-|.++++
T Consensus       188 ~l~~l~~~~------~~~livDeah~~gv~G~~g~G-~~~~~~~~~~~~~~t~~ka~g~~  240 (383)
T d1bs0a_         188 EIQQVTQQH------NGWLMVDDAHGTGVIGEQGRG-SCWLQKVKPELLVVTFGKGFGVS  240 (383)
T ss_dssp             HHHHHHHHT------TCEEEEECTTTTTTSSGGGCC-HHHHTTCCCSEEEEESSSTTSSC
T ss_pred             HHHHHHHhc------CcEEEeecceeeeecCCcccc-hHHHcCCcccccccccccccccc
Confidence            999999999      999999999998876421110 01111123455666677877543

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.50  E-value=4.3e-13  Score=125.01  Aligned_cols=159  Identities=18%  Similarity=0.139  Sum_probs=126.0

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++.|.+.       .+++++|..|+..++.++.++             +++|+++...|.....
T Consensus        62 nPT~~~LE~~----la~LEgg~~-------a~~~sSGmaAi~~~l~~ll~~-------------Gd~vi~~~~~Yg~t~~  117 (397)
T d1y4ia1          62 NPTTDALEKK----LAVLERGEA-------GLATASGISAITTTLLTLCQQ-------------GDHIVSASAIYGCTHA  117 (397)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESSSCHHHHH
T ss_pred             CHHHHHHHHH----HHHHhCCcc-------ceeehHHHHHHHHHHhhccCC-------------CCeeeeecccccccch
Confidence            4566666655    888988864       678888999998888887653             6899999988876544


Q ss_pred             H----HHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 F----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .    ...+|+++.+++..      |++.++++|+++|++|++-.|+||+..+.||++|+++|+++      |++++||.
T Consensus       118 ~~~~~l~~~Gi~~~~vd~~------d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~------gi~~vvDn  185 (397)
T d1y4ia1         118 FLSHSMPKFGINVRFVDAG------KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ------GALLVVDN  185 (397)
T ss_dssp             HHHTHHHHTTCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEEC
T ss_pred             hhhcccCCCceEeeccCCC------CHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcC------CceEEecC
Confidence            3    44569999887643      67999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCC--cCeeEEEEeC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWRT  292 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P--~g~g~l~~~~  292 (356)
                      .++.++.  +.   +++   .|+|.+..|.-|++.+-  .-.|+++.++
T Consensus       186 T~atP~~--~~---Pl~---~GaDivihS~TKyi~Ghsdvl~G~v~~~~  226 (397)
T d1y4ia1         186 TFMSPYC--QQ---PLQ---LGADIVVHSVTKYINGHGDVIGGIIVGKQ  226 (397)
T ss_dssp             TTTCTTT--CC---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred             cccCccc--Cc---chh---cCCCEEEEehhhhcCCCcceeeeccCCCH
Confidence            9876443  22   233   38999999999997654  3346666654

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=9e-15  Score=134.95  Aligned_cols=196  Identities=11%  Similarity=-0.129  Sum_probs=138.8

Q ss_pred             cCCCChHHHHHHHHHHhcc-c---CCCc---ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINK-N---YVDM---DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~-~---~~~~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      .|...++.|.++|.+.+.. +   .+-+   ..++.+.++.+++++.+++++|.+.+    ..+++++|++++++.+...
T Consensus         8 GP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~----~~v~~~~gs~t~~~~a~~~   83 (360)
T d1bjna_           8 GPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSN----YKVLFCHGGGRGQFAAVPL   83 (360)
T ss_dssp             SSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC----CEEEEECCchHHHHhhhhh
Confidence            3445578999999877642 1   1111   13567788999999999999999752    3478888888887766544


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      ...            ..++.+++....+..  +...++..|..++.+..+.+ ...+.+.+++.+.++++++++++.+|.
T Consensus        84 ~~~------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~~~~~~  150 (360)
T d1bjna_          84 NIL------------GDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTV-DGLRAVKPMREWQLSDNAAYMHYCPNE  150 (360)
T ss_dssp             HHC------------TTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEE-TTEEEECCGGGCCCCSSCSCEEECSEE
T ss_pred             ccc------------ccccccceecccchhhhhHHHHhhcCccceeeccccC-CCcchhhhhhhhccCCceeEEEecccc
Confidence            322            113455555444433  55566666777666666543 556666777777788888888999999


Q ss_pred             ccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeCC
Q 018437          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (356)
Q Consensus       215 tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~  293 (356)
                      ||+..|++.+.  ++.+      ++.+++|++++.+..         ++....+|...+++||++++|.|.+++++.+.
T Consensus       151 t~~~~~~~~i~--~~~~------~~~v~vDa~~~~~~~---------~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~  212 (360)
T d1bjna_         151 TIDGIAIDETP--DFGA------DVVVAADFSSTILSR---------PIDVSRYGVIYAGAQKNIGPAGLTIVIVREDL  212 (360)
T ss_dssp             TTTTEECCCCC--CCCT------TCCEEEECTTTTTSS---------CCCGGGCSEEEEETTTTTSSTTCEEEEEEGGG
T ss_pred             cccCcccccee--cccc------cceeeeeeeccccce---------eeeeccceeEEEEcccccccCCCceeEeeehh
Confidence            99998887764  4555      889999999886433         22334689999999999999999999988654

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.4e-13  Score=129.73  Aligned_cols=189  Identities=13%  Similarity=-0.022  Sum_probs=134.6

Q ss_pred             hHHHHHHHHHHhcccCCCcccCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           69 EPECDKLVMASINKNYVDMDEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +|.+.+++.++++....+...++   +...+.+++.+.+++++|.+.       .+++++|++||..++.++..+     
T Consensus        61 hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~-------al~~~SG~~An~~~i~~l~~~-----  128 (401)
T d1fc4a_          61 HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMED-------AILYSSCFDANGGLFETLLGA-----  128 (401)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHTTHHHHCCT-----
T ss_pred             CHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCCc-------eEEecchhhhhHHHHHHhcCC-----
Confidence            58888888888776544443332   233445566677999999975       789999999999999877532     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHH---hh---CceEEEEecCCCcccccC
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV---DE---NTICVAAILGSTLTGEFE  219 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i---~~---~~~~v~~~~~~~~tG~~~  219 (356)
                              ++.|++....|.++...+...++++..++..      |.+++++.+   .+   .+.+|++....+..|.+.
T Consensus       129 --------~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~------d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~  194 (401)
T d1fc4a_         129 --------EDAIISDALNHASIIDGVRLCKAKRYRYANN------DMQELEARLKEAREAGARHVLIATDGVFSMDGVIA  194 (401)
T ss_dssp             --------TCEEEEETTCCHHHHHHHHTSCSEEEEECTT------CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEEC
T ss_pred             --------CcEEEeCCcchHHHHccccccCceEEEEcCC------ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchh
Confidence                    5789999999999999999888887766532      455555544   32   235666666666779999


Q ss_pred             CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       220 ~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      |+++|.++|++|      ++++++|++++++++..-..-....+. ...+|.++.+..|.++++.| |++..
T Consensus       195 ~L~~l~~L~~~~------~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G-g~v~g  259 (401)
T d1fc4a_         195 NLKGVCDLADKY------DALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTAA  259 (401)
T ss_dssp             CHHHHHHHHHHT------TEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEE
T ss_pred             hhhHHHHHHhhc------CcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCc-ccccC
Confidence            999999999999      999999999998766311000001111 34689999999999866554 45443

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.46  E-value=8.2e-14  Score=126.56  Aligned_cols=187  Identities=13%  Similarity=0.057  Sum_probs=124.3

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      .|+|++.+++.++.. +...|...|...++|++    +++++|.+.       +++++|||+||+.++.+++..      
T Consensus        11 ~p~p~v~~A~~~a~~-g~~~yg~~p~~~~le~~----lA~~~G~~~-------~~~~~sGt~A~~~al~a~~~~------   72 (343)
T d1m6sa_          11 KPTEEMRKAMAQAEV-GDDVYGEDPTINELERL----AAETFGKEA-------ALFVPSGTMGNQVSIMAHTQR------   72 (343)
T ss_dssp             CCCHHHHHHHHTCCC-CCGGGTCCHHHHHHHHH----HHHHTTCSE-------EEEESCHHHHHHHHHHHHCCT------
T ss_pred             CCCHHHHHHHHhhhc-CCcccCCCHHHHHHHHH----HHHHHCCCe-------EEEeCCHHHHHHHHHHHHhcc------
Confidence            446889999875532 22234556777777765    889999874       789999999999999887653      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHH---hhCCeeEEEEecCCccccCHHHHHHHHhhC------ce-EEEEecCCCccc
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFAR---YFEVELKEVKLEEGYYVMNPVKAVELVDEN------TI-CVAAILGSTLTG  216 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~~-~v~~~~~~~~tG  216 (356)
                             ++.+++..+.|+++.....   ..+..++.++.+  .+..|++.+++.+...      +. +++...++++.|
T Consensus        73 -------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  143 (343)
T d1m6sa_          73 -------GDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK--NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGG  143 (343)
T ss_dssp             -------TCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE--TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTS
T ss_pred             -------CCceeccccccceeeecccccccccceeeccccc--cCccCHHHHHHhhhhhhcccccccccccccccccCCc
Confidence                   5688888888877654333   223344445444  3788999999998753      33 445555666666


Q ss_pred             ccC---CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEE
Q 018437          217 EFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       217 ~~~---~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      .+.   ++++|.++|+++      ++++|+|++++++..+...... ... ....+..+++.+|.+++..+.+++
T Consensus       144 ~~~~~~~l~~i~~~~~~~------g~~~~~D~a~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~g~~~~~~~  210 (343)
T d1m6sa_         144 RVVPLENIKEICTIAKEH------GINVHIDGARIFNASIASGVPV-KEY-AGYADSVMFCLSKGLCAPVGSVVV  210 (343)
T ss_dssp             BCCCHHHHHHHHHHHHHH------TCEEEEEETTHHHHHHHHCCCH-HHH-HHTCSEEEEESSSTTCCSSCEEEE
T ss_pred             eecCHHHHHHHHHHHHhc------CeEEEeccccccccccccccch-hhh-cccccccccccccccccccccccc
Confidence            664   556777888999      9999999999876654221111 111 224566677777776666554443

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.46  E-value=1.3e-12  Score=122.47  Aligned_cols=243  Identities=11%  Similarity=-0.031  Sum_probs=157.4

Q ss_pred             hHHHHHHHHHHhcccCCCccc---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHH
Q 018437           69 EPECDKLVMASINKNYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (356)
Q Consensus        69 ~~~v~~~i~~~~~~~~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (356)
                      +|.+.++..+++...+.+...   ..+...+.+++.+.+++++|.+.       .++.+.|..||..++.++...     
T Consensus        61 ~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~-------all~~sG~~An~~~i~~l~~~-----  128 (396)
T d2bwna1          61 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA-------ALVFSSAYNANDATLSTLRVL-----  128 (396)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE-------EEEESCHHHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCc-------eeeeecchHHHHHHHHHHhcc-----
Confidence            477888887777754333322   23555566677777999999985       677888899998888776432     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh----CceEEEEecCCCcccccCCH
Q 018437          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFEDV  221 (356)
Q Consensus       146 ~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~i  221 (356)
                            ..++.|+.....|.|+...++..+++++.++-+      |.++|++.+..    ++++|++....+..|.+.|+
T Consensus       129 ------~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn------d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl  196 (396)
T d2bwna1         129 ------FPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPI  196 (396)
T ss_dssp             ------STTCEEEEETTCCHHHHHHHHHSCCCEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCH
T ss_pred             ------cCCCceeehhhhhhccchhhhccccCceEeecc------hHHHhhhHHhhhcccCceeEEEEeeccCccccccc
Confidence                  114577788899999999999999988776532      56666666642    45677788888889999999


Q ss_pred             HHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCccccc-CCCceEEEEcCCcCCCCCcCeeEEEEeCCCCCcccc
Q 018437          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL  300 (356)
Q Consensus       222 ~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~~~~~~  300 (356)
                      ++|.+++++|      +++++||.|++.+++.....-....+. ...+|.++.+.-|.+++. | |+++. +++.. +.+
T Consensus       197 ~~l~~L~~~y------~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~-G-g~v~~-~~~~i-~~l  266 (396)
T d2bwna1         197 KEICDIAEEF------GALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF-G-GYIAA-SARMV-DAV  266 (396)
T ss_dssp             HHHHHHHHHH------TCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC-C-EEEEE-CHHHH-HHH
T ss_pred             HhHHHHhhhh------cceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccccc-c-cccch-hHHHH-HHH
Confidence            9999999999      999999999998876321110000111 235799999999998543 2 45544 33221 111


Q ss_pred             cc-ccCCCCCCCCCccccCCCChhHHHHHHHHHHHhCHHHHHHHHHHHHhccCc
Q 018437          301 VF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPF  353 (356)
Q Consensus       301 ~~-~~~~~~~~~~~~~~~~tr~~~~~~~~~~~l~~lg~~G~~~~~~~~~~~a~~  353 (356)
                      .. ...|...        .+-+...+++..++++.+-.+..+++..+...++++
T Consensus       267 ~~~~~~~ifS--------talpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~  312 (396)
T d2bwna1         267 RSYAPGFIFS--------TSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKV  312 (396)
T ss_dssp             HHHCHHHHTS--------BCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             Hhhcchhhhc--------ccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            11 1112211        233444466666777766544434344444444443

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.9e-13  Score=128.68  Aligned_cols=224  Identities=9%  Similarity=-0.092  Sum_probs=145.0

Q ss_pred             hcCCCC-ccccccc---C---CCChHHHHHHHHHHhcc--cCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 018437           52 LDGNPR-LNLASFV---T---TWMEPECDKLVMASINK--NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG  122 (356)
Q Consensus        52 ~~~~~~-~~l~~~~---~---~~~~~~v~~~i~~~~~~--~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~  122 (356)
                      .+.+|. +||+.+.   +   ++..+.+.++.....+.  ....|....|..++++++.+++.+..|...+.   ..++.
T Consensus        22 ~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~---~~i~~   98 (397)
T d3tata_          22 EDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQ---QRVAT   98 (397)
T ss_dssp             HSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHT---TCEEE
T ss_pred             cCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCc---CcEEE
Confidence            344454 5666553   1   12246788876654433  23347777799999999888887665554211   22444


Q ss_pred             eCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecC-CccccCHHHHHHHHh-
Q 018437          123 TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVD-  200 (356)
Q Consensus       123 t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~-  200 (356)
                      +.|++.+...++..+.....         ..+++|++++|+|..+...++..|++++.+|++. +.+..|.+++.+.+. 
T Consensus        99 ~~~~~~~~~~~l~~~~~~~~---------~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~  169 (397)
T d3tata_          99 IQTLGGSGALKVGADFLKRY---------FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKT  169 (397)
T ss_dssp             CCBSHHHHHHHHHHHHHHHH---------CSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTT
T ss_pred             ecCchhHHHHHHHHHHhhhc---------CCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhh
Confidence            55555443333333222111         1157899999999999999999999999999964 357889888887765 


Q ss_pred             --hCceEEEEecCCCccccc---CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcc-cccCCCceEEE-E
Q 018437          201 --ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSIN-V  273 (356)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~---~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Ds~~-~  273 (356)
                        ++++++++++|+||||.+   +.+++|.++|+++      +++++.|.+|..+..+.-...... .....+-..+. .
T Consensus       170 ~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~------~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~  243 (397)
T d3tata_         170 LPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR------ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSN  243 (397)
T ss_dssp             CCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHT------TCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECB
T ss_pred             cccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhc------CeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEe
Confidence              457789999999999998   4567899999999      999999999987654200000000 00111222333 3


Q ss_pred             cCCcC-CCCCcCeeEEEEeCC
Q 018437          274 SGHKY-GLVYAGVGWVVWRTK  293 (356)
Q Consensus       274 ~~hK~-l~~P~g~g~l~~~~~  293 (356)
                      ++.|. +...+.+|+++....
T Consensus       244 s~SK~~~~~G~RiG~~~~~~~  264 (397)
T d3tata_         244 SFSKIFSLYGERVGGLSVMCE  264 (397)
T ss_dssp             CCHHHHTBTTTCCBCCEEECS
T ss_pred             cCcccccccCccccccccchh
Confidence            46664 445678899987654

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.45  E-value=5.5e-14  Score=130.39  Aligned_cols=197  Identities=12%  Similarity=-0.037  Sum_probs=134.9

Q ss_pred             cccccccCCCChHHHHHHHHHHhccc----CCCcc---cCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHH
Q 018437           58 LNLASFVTTWMEPECDKLVMASINKN----YVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (356)
Q Consensus        58 ~~l~~~~~~~~~~~v~~~i~~~~~~~----~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (356)
                      ||| +-.|...++.|.++|.+.+-..    .+..+   .++.+.++.+++++.+++++|.+.+    ..+++++|++.++
T Consensus         5 ~~F-~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~----~~i~~~~gs~t~~   79 (361)
T d2c0ra1           5 YNF-NAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTG----YKVLFIQGGASTQ   79 (361)
T ss_dssp             EEC-CSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSS----EEEEEESSHHHHH
T ss_pred             ccc-CCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC----CEEEEECCCchHH
Confidence            444 3345556789999998776321    11111   2567889999999999999999752    3478888887776


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc--hHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEE
Q 018437          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV--CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAA  208 (356)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~--s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~  208 (356)
                      +.+......            ..++++++....+.  .+...++..|..+..++.+.. ..++++.+++.+..++.    
T Consensus        80 ~ea~~~~l~------------~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----  142 (361)
T d2c0ra1          80 FAMIPMNFL------------KEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEAS-NYMTLPKLQEIQLQDNA----  142 (361)
T ss_dssp             HHHHHHHHC------------CTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGG-TTCSCCCGGGCCCCTTE----
T ss_pred             HHHHHhccc------------cCCCceEEEeechhhhhhhhhhhhcCceeeeeccccc-cccchhhhhhhcccCcc----
Confidence            655443321            11344444333333  366777788999999988764 67788888887766542    


Q ss_pred             ecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEE
Q 018437          209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (356)
Q Consensus       209 ~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l  288 (356)
                      ++.+|.||...|+++|.++|+++      |++++||++++.+..|       +++..  +|....++||+++.|.+.+++
T Consensus       143 ~~v~~~tg~~~~~~~i~~~~~~~------~al~~vDavss~g~~~-------id~~~--~di~~~s~~k~~~~~~~~~~~  207 (361)
T d2c0ra1         143 AYLHLTSNETIEGAQFKAFPDTG------SVPLIGDMSSDILSRP-------FDLNQ--FGLVYAGAQKNLGPSGVTVVI  207 (361)
T ss_dssp             EEEEEESEETTTTEECSSCCCCT------TSCEEEECTTTTTSSC-------CCGGG--CSEEEEETTTTTCCSSCEEEE
T ss_pred             eEEEEecccceecceEEEeeccC------CceEEEEeeccccccc-------ccccc--ceeEEEecccccccccCcEEE
Confidence            34567889999999999999999      9999999999876553       44443  355556689988766666665


Q ss_pred             EEe
Q 018437          289 VWR  291 (356)
Q Consensus       289 ~~~  291 (356)
                      +..
T Consensus       208 ~~~  210 (361)
T d2c0ra1         208 VRE  210 (361)
T ss_dssp             EEG
T ss_pred             EEh
Confidence            543

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.43  E-value=4.7e-13  Score=119.95  Aligned_cols=188  Identities=12%  Similarity=0.023  Sum_probs=118.1

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      .++|.+.+++.++.......+.    ..+..+++++.+++++|+++     ..+++|+||||||+.++..+..+      
T Consensus        11 g~~P~v~eAl~~~~~~~~~~y~----~~~~~~~lr~~ia~~~g~~~-----~~v~~tsggtean~~a~~~~~~~------   75 (340)
T d1svva_          11 GMHPKILDLMARDNMTQHAGYG----QDSHCAKAARLIGELLERPD-----ADVHFISGGTQTNLIACSLALRP------   75 (340)
T ss_dssp             CCCHHHHHHHHHHTTCCCCSTT----CSHHHHHHHHHHHHHHTCTT-----SEEEEESCHHHHHHHHHHHHCCT------
T ss_pred             CCCHHHHHHHHHHhhcCCCCCC----CCHHHHHHHHHHHHHhCCCc-----ceEEEcCCHHHHHHHHHHHHhhh------
Confidence            3468899998876543332232    23455678888999999986     34899999999999999877543      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhh------CceEEEEecCCCccccc--
Q 018437          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEF--  218 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~--  218 (356)
                             +.+++.....|.++.......+.....+.........+.+...++...      .+..++++..+++.|.+  
T Consensus        76 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (340)
T d1svva_          76 -------WEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYT  148 (340)
T ss_dssp             -------TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCC
T ss_pred             -------ccccccccccceeeeecccccccceeeeecccccccccchhHHHHhhhhhcccCCcceeeeeccccccccccc
Confidence                   457888888888876555554444333333322245555555444432      12334444455555665  


Q ss_pred             -CCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC
Q 018437          219 -EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY  282 (356)
Q Consensus       219 -~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P  282 (356)
                       +++..+.++|+++      +.++|+|++++++..+...............+...+++.|.+..+
T Consensus       149 ~~~~~~~~~~~~~~------g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (340)
T d1svva_         149 KQELEDISASCKEH------GLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMF  207 (340)
T ss_dssp             HHHHHHHHHHHHHH------TCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSS
T ss_pred             HHHhhhhhcccccc------cceeeeeccceeeeecccccccccccccccceeeecCCccccccc
Confidence             4566778999999      999999999987666422211111111123456667777765443

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=7.3e-13  Score=123.15  Aligned_cols=160  Identities=16%  Similarity=-0.040  Sum_probs=123.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH-
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE-  168 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~-  168 (356)
                      .|....+|+.    ++++-|.+.       .+.+++|..|+..++.++..+             +++|+++...|.... 
T Consensus        49 nPt~~~le~~----la~LEgg~~-------a~~~sSGMaAi~~~l~~l~~~-------------gd~vv~~~~~yg~t~~  104 (384)
T d1cs1a_          49 NPTRDVVQRA----LAELEGGAG-------AVLTNTGMSAIHLVTTVFLKP-------------GDLLVAPHDCYGGSYR  104 (384)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHH
T ss_pred             CHHHHHHHHH----HHHHhCCCc-------eEEecChHHHHHHHHhhcccc-------------cceecccccccchhhh
Confidence            4566667665    899988864       678888899998888876543             578999888776543 


Q ss_pred             ---HHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          169 ---KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       169 ---~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                         ..+...|+.+.+++.      .|.+++++++.++|++|++-.|+||+..+.||++|+++||++      |++++||.
T Consensus       105 ~~~~~~~~~g~~~~~~d~------~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~------g~~~vVDN  172 (384)
T d1cs1a_         105 LFDSLAKRGCYRVLFVDQ------GDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREV------GAVSVVDN  172 (384)
T ss_dssp             HHHHHHTTTSCEEEEECT------TCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHT------TCEEEEEC
T ss_pred             hhhhhhcccccccccccC------CCHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhc------CcEEEEec
Confidence               333445666666543      267899999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc--CeeEEEEeCC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTK  293 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l~~~~~  293 (356)
                      .++.++.  +.   +++   .|+|.+.-|.-|++.+-.  -.|+++.+++
T Consensus       173 T~atP~~--~~---Pl~---~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~  214 (384)
T d1cs1a_         173 TFLSPAL--QN---PLA---LGADLVLHSCTKYLNGHSDVVAGVVIAKDP  214 (384)
T ss_dssp             TTTCTTT--CC---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEESSH
T ss_pred             cccCccc--cc---ccc---cCCCEEEEccccccccCCCcccccccCCch
Confidence            9875433  22   233   389999999999976543  4566666543

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.41  E-value=8.8e-13  Score=122.52  Aligned_cols=159  Identities=13%  Similarity=0.079  Sum_probs=120.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++.+-|.+.       .+.+++|..|+. ++.++..             .+++|+++...|.....
T Consensus        48 nPt~~~le~~----la~LE~~~~-------a~~fsSGMaAis-all~ll~-------------~Gd~vv~~~~~Yg~t~~  102 (380)
T d1ibja_          48 NPTRDALESL----LAKLDKADR-------AFCFTSGMAALS-AVTHLIK-------------NGEEIVAGDDVYGGSDR  102 (380)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHH-HHHTTSC-------------TTCEEEEESSCCHHHHH
T ss_pred             ChHHHHHHHH----HHHHcCCce-------EEehhhHHHHHH-HHHHhhC-------------CCCEEEEEecccccccc
Confidence            4566666655    899988864       567777777764 5554432             25799999988877655


Q ss_pred             HHH----hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 FAR----YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~~~----~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      ..+    .+|+++.+++..      |+++++++++++|++|++-.|+||+..+.||++|+++|+++      |++++||.
T Consensus       103 l~~~~~~~~gi~~~~~d~~------~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~------g~~~vVDn  170 (380)
T d1ibja_         103 LLSQVVPRSGVVVKRVNTT------KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQ------GALVLVDN  170 (380)
T ss_dssp             HHHHTSGGGTCEEEEECTT------SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTT------TCEEEEEC
T ss_pred             hhhhhhccccccccccCcc------hHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHc------CCeEEeec
Confidence            554    457777776532      67899999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc--CeeEEEEeCC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTK  293 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l~~~~~  293 (356)
                      .++.++.  ..   +++   .|+|.+..|..|++.+-.  -.|.++.+++
T Consensus       171 T~atP~~--~~---Pl~---~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~  212 (380)
T d1ibja_         171 SIMSPVL--SR---PLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGE  212 (380)
T ss_dssp             TTTCTTT--CC---GGG---TTCSEEEEETTTTTTCSSCCCCEEEEECSH
T ss_pred             ccccccc--cc---ccc---cCCCEEEecccceeccccCccccccccchh
Confidence            9876443  22   233   489999999999976643  4566666543

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.37  E-value=1.3e-12  Score=119.53  Aligned_cols=152  Identities=21%  Similarity=0.139  Sum_probs=118.6

Q ss_pred             HHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHHhhCC
Q 018437          101 VNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEV  176 (356)
Q Consensus       101 ~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s----~~~~~~~~G~  176 (356)
                      .+.++++.|.+.       .+.+++|..|+..+++++.++             +++|+++...|..    +.+..+.+|+
T Consensus         4 E~~la~Leg~~~-------a~~~sSGMaAi~~~l~~ll~~-------------Gd~iv~~~~~Yg~t~~~~~~~l~~~gi   63 (331)
T d1pffa_           4 EGKIAKLEHAEA-------CAATASGMGAIAASVWTFLKA-------------GDHLISDDCLYGCTHALFEHQLRKFGV   63 (331)
T ss_dssp             HHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred             HHHHHHHhCCCe-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHHHHHHHHhcCe
Confidence            345899988864       678888999998888877553             5789998887755    3445566799


Q ss_pred             eeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHH-HHhhhccCCCCcEEEeccccccccccc
Q 018437          177 ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL-TKKNEETGWDTPIHVDAASGGFIAPFL  255 (356)
Q Consensus       177 ~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~-~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (356)
                      ++.+++..      |++.++++++++|++|++..++||+..+.|++++.+++ +++      +++++||..++.++.  +
T Consensus        64 ~~~~~d~~------d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~------~~~~vVDnT~atp~~--~  129 (331)
T d1pffa_          64 EVDFIDMA------VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQK------DILVIVDNTFASPIL--T  129 (331)
T ss_dssp             EEEEECTT------STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSS------SCEEEEECTTTHHHH--C
T ss_pred             EEEEeccc------chhhHhhhcccccceeeeecccccccccccchhhhhhhhccc------CceEEeecccccccc--c
Confidence            99888653      56889999999999999999999999999999999885 667      999999999886554  2


Q ss_pred             CCCCcccccCCCceEEEEcCCcCCCCCc--CeeEEEEeC
Q 018437          256 YPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRT  292 (356)
Q Consensus       256 ~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l~~~~  292 (356)
                      .   +++   .|+|.+.-|.-|++.+-.  -.|.++.++
T Consensus       130 ~---pl~---~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~  162 (331)
T d1pffa_         130 N---PLD---LGVDIVVHSATKYINGHTDVVAGLVCSRA  162 (331)
T ss_dssp             C---GGG---GTCSEEEEETTTTTSSSSSCCCEEEEECH
T ss_pred             c---ccc---cCCCEEEecchhhcCCCCccccccccccc
Confidence            2   233   379999999999976643  346666543

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.34  E-value=3.7e-13  Score=124.34  Aligned_cols=193  Identities=7%  Similarity=-0.146  Sum_probs=125.2

Q ss_pred             cCCCChHHHHHHHHHHhcccCC----Cc---ccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHH
Q 018437           64 VTTWMEPECDKLVMASINKNYV----DM---DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (356)
Q Consensus        64 ~~~~~~~~v~~~i~~~~~~~~~----~~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (356)
                      .|...+++|.+++.+.+.....    ..   ..++.+.++.+++++.+++++|.+.+    ..+++++|++++++.+...
T Consensus        10 GP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~----~~i~~~~gt~~~~~~~~~~   85 (360)
T d1w23a_          10 GPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND----YQILFLQGGASLQFTMLPM   85 (360)
T ss_dssp             SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC----CEEEEeCCcHHHHHHHHHh
Confidence            4555678999999876642111    00   12567788999999999999999863    3477888877776655544


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                      ....            .+..+++....|..  +...+...+..++.+..... ...+++.+++...    .+..++.+|.
T Consensus        86 ~~~~------------~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~  148 (360)
T d1w23a_          86 NLLT------------KGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKAN-SYQSIPDFSEFQL----NENDAYLHIT  148 (360)
T ss_dssp             HHCC------------TTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGG-TSCSCCCGGGCCC----CTTEEEEEEE
T ss_pred             hhcc------------cCcccceeeccchhhhhHHHHHHhhhcceeeccccc-cccchhhhhhccc----ccccceeEec
Confidence            3221            13445444444333  44445555666655554332 2233334433332    2234566788


Q ss_pred             ccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEEeC
Q 018437          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       215 tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~  292 (356)
                      ||++.|+++|.++|+++      |+++++|++++.+..       ++++...++|.++++.||+  .|.+.|+++.+.
T Consensus       149 tg~~~~~~~i~~~~~~~------g~l~ivDavqs~g~~-------~id~~~~~vd~~~~~~~k~--~~~~~~~~~~~~  211 (360)
T d1w23a_         149 SNNTIYGTQYQNFPEIN------HAPLIADMSSDILSR-------PLKVNQFGMIYAGAQKNLG--PSGVTVVIVKKD  211 (360)
T ss_dssp             SEETTTTEECSSCCCCC------SSCEEEECTTTTTSS-------CCCGGGCSEEEEETTTTTS--CTTCEEEEEEHH
T ss_pred             CCccccceeeeeccccc------eeeEEeecccccccc-------ccccccccceEEeeccccc--cCCcceeeEech
Confidence            99999999999999999      999999999987655       4566666889888888875  455666666543

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.33  E-value=1.7e-11  Score=114.98  Aligned_cols=161  Identities=20%  Similarity=0.109  Sum_probs=122.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++-|.+.       .+.+++|..|+..++.++.+.             +++||++...|.....
T Consensus        57 nPT~~~LE~~----la~LE~~~~-------a~~~~SGmaAi~~~~~~l~~~-------------gd~il~~~~~Yg~t~~  112 (421)
T d2ctza1          57 NPTVDVLEKR----LAALEGGKA-------ALATASGHAAQFLALTTLAQA-------------GDNIVSTPNLYGGTFN  112 (421)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEECSCCCHHHHH
T ss_pred             CHHHHHHHHH----HHHHhCCCe-------EEEecChHHHHHHHHHhhccc-------------ccceeecCCcCCchhH
Confidence            4566666655    888888864       678888888888888777543             6799999988866444


Q ss_pred             ----HHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 ----FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ----~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                          .+...|+++.+++.+.     +.+..++.++++|++|++-.|+||+..+.||++|+++||++      |++++||.
T Consensus       113 l~~~~~~~~gi~~~~~d~~~-----~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~------g~~~vvDn  181 (421)
T d2ctza1         113 QFKVTLKRLGIEVRFTSREE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREK------GVALIVDN  181 (421)
T ss_dssp             HHHTHHHHTTCEEEECCTTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEEC
T ss_pred             HHHHHHhhccccceeccccc-----CcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhc------CCceEecc
Confidence                4446788888765432     35666777888999999999999999999999999999999      99999999


Q ss_pred             ccc-cccccccCCCCcccccCCCceEEEEcCCcCCCCCc--CeeEEEEeCC
Q 018437          246 ASG-GFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTK  293 (356)
Q Consensus       246 a~~-~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l~~~~~  293 (356)
                      .++ ..+.  +.   +++   .|+|.+.-|..|++++-.  -.|+++.++.
T Consensus       182 T~a~tP~~--~~---Pl~---~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~  224 (421)
T d2ctza1         182 TFGMGGYL--LR---PLA---WGAALVTHSLTKWVGGHGAVIAGAIVDGGN  224 (421)
T ss_dssp             GGGGGGTS--CC---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECSC
T ss_pred             ccccccee--cc---ccc---cCCcEEEEechhhccCCCCeEEEEEEcCCc
Confidence            986 3322  11   222   489999999999986643  3567766543

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.32  E-value=1.1e-11  Score=115.44  Aligned_cols=150  Identities=13%  Similarity=0.004  Sum_probs=115.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH-
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE-  168 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~-  168 (356)
                      .|....+|+.    ++++.|...       .+++++|..|+..++.++..+             +++|+++...|.... 
T Consensus        66 nPt~~~LE~~----la~LEgg~~-------a~~~sSGMaAi~~~l~~l~~~-------------Gd~iv~~~~~Yg~t~~  121 (398)
T d1qgna_          66 NPTTVVLEEK----ISALEGAES-------TLLMASGMCASTVMLLALVPA-------------GGHIVTTTDCYRKTRI  121 (398)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESCHHHHHHHHHHHHSCS-------------SCEEEEETTSCHHHHH
T ss_pred             ChHHHHHHHH----HHHHhCCce-------EEEecCcchHHHHHHhhcccc-------------cccccccccccchhhh
Confidence            4566666665    888988864       678888899988888876542             678999888776544 


Q ss_pred             ---HHHHhhCCeeEEEEecCCccccCHH-HHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEe
Q 018437          169 ---KFARYFEVELKEVKLEEGYYVMNPV-KAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (356)
Q Consensus       169 ---~~~~~~G~~v~~v~~~~~~~~~d~~-~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD  244 (356)
                         +....+|+++.+++..      |.+ ..++.+++++++|++-.|+||+..+.||++|+++|+++      |++++||
T Consensus       122 l~~~~~~~~gi~~~~~~~~------~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~------g~~~vVD  189 (398)
T d1qgna_         122 FIETILPKMGITATVIDPA------DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEK------GALVCID  189 (398)
T ss_dssp             HHHHTGGGGTCEEEEECSS------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEE
T ss_pred             hhccccccccccccccccc------chhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhc------CCEEEec
Confidence               3444568888777632      233 34456678999999999999999999999999999999      9999999


Q ss_pred             cccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc
Q 018437          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA  283 (356)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~  283 (356)
                      ..++.++.  +.|   +   ..|+|.+.-|.-|++.+..
T Consensus       190 nT~atP~~--~~P---l---~~GaDiVihS~TKy~~Ghs  220 (398)
T d1qgna_         190 GTFATPLN--QKA---L---ALGADLVLHSATKFLGGHN  220 (398)
T ss_dssp             CTTTCTTT--CCT---T---TTTCSEEEECTTTTTTCSS
T ss_pred             ceeecccc--CCc---h---hhCCCEEEEechhhcCccc
Confidence            99876443  222   2   2489999999999987764

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.29  E-value=2.1e-11  Score=113.61  Aligned_cols=159  Identities=17%  Similarity=0.107  Sum_probs=122.1

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH--
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW--  167 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~--  167 (356)
                      .|....+|+.    ++++.|.+.       .+.+++|..|+..++.++..+             +++|+++...|...  
T Consensus        58 nPT~~~le~~----la~LEg~~~-------a~~~sSGmaAi~~~~l~l~~~-------------gd~vv~~~~~yg~t~~  113 (394)
T d1e5ea_          58 NPTVSNLEGK----IAFLEKTEA-------CVATSSGMGAIAATVLTILKA-------------GDHLISDECLYGCTHA  113 (394)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESCCCHHHHH
T ss_pred             CHHHHHHHHH----HHHHhCCcc-------eeeeccchHHHHHHHHhhccc-------------ccccccccceeehhhH
Confidence            4566667665    889988864       678888888988888777543             57899988877553  


Q ss_pred             --HHHHHhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHH-hhhccCCCCcEEEe
Q 018437          168 --EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIHVD  244 (356)
Q Consensus       168 --~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~-~~~~~~~~~~l~vD  244 (356)
                        .+.....|+++.+++..      |++++++++++++++|++-.|+||+..+.|++++.+++++ +      ++.++||
T Consensus       114 ~~~~~~~~~gi~~~~~d~~------d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~------g~~vvvD  181 (394)
T d1e5ea_         114 LFEHALTKFGIQVDFINTA------IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQE------GVLVIAD  181 (394)
T ss_dssp             HHHTHHHHTTCEEEEECTT------STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTST------TCEEEEE
T ss_pred             hHHHHhhccceeeeccCCC------CHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhcccccc------CeEEEec
Confidence              34455678999888754      4577999999999999999999999999999999887765 5      8999999


Q ss_pred             cccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc--CeeEEEEeC
Q 018437          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRT  292 (356)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l~~~~  292 (356)
                      ..++.++.  +.   +++   .|+|.+.-|.-|++.+..  -.|+++.++
T Consensus       182 nT~atP~~--~~---Pl~---~GaDiVvhS~TKy~~GhsDv~~G~v~~~~  223 (394)
T d1e5ea_         182 NTFCSPMI--TN---PVD---FGVDVVVHSATKYINGHTDVVAGLICGKA  223 (394)
T ss_dssp             CTTTCTTT--CC---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred             CcccCccc--CC---chh---cCCCEEEechhhhcCCCcccccccccchh
Confidence            99876443  22   233   389999999999986643  356666653

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=2.5e-11  Score=113.09  Aligned_cols=160  Identities=16%  Similarity=0.039  Sum_probs=122.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++-|...       .+.+++|..|+..++.++..+             +++||++...|.....
T Consensus        57 nPt~~~le~~----la~LEg~~~-------a~~~~SGMaAi~~~l~~l~~~-------------Gd~iv~~~~~Yg~T~~  112 (391)
T d1cl1a_          57 TLTHFSLQQA----MCELEGGAG-------CVLFPCGAAAVANSILAFIEQ-------------GDHVLMTNTAYEPSQD  112 (391)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEETTSCHHHHH
T ss_pred             ChhHHHHHHH----HHHHhCCcc-------EEEeccccceeeehhhcccCC-------------CCeEEEecccccchhh
Confidence            4566666655    889988864       678888899998888877543             5789999888876544


Q ss_pred             HH----HhhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 FA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .+    ...|+++.+++..      |.+++++++++++++|++-.|+||+..+.|+++|+++|+++..    |++++||.
T Consensus       113 l~~~~l~~~Gi~~~~~d~~------d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~----g~~~vVDn  182 (391)
T d1cl1a_         113 FCSKILSKLGVTTSWFDPL------IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVP----DAIIMIDN  182 (391)
T ss_dssp             HHHHTGGGGTCEEEEECTT------CGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCT----TCEEEEEC
T ss_pred             hhhhcccccccccccccCc------cccccccccccccceeeecccCcccccccccHHHHHHHHhccC----CcEEEEec
Confidence            44    3457777777643      4577899999999999999999999999999999999977522    89999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc--CeeEEEEe
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWR  291 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l~~~  291 (356)
                      .++.++.  +.   +++   .|+|.+..|.-|++.+-.  -.|+++.+
T Consensus       183 T~atP~~--~~---Pl~---~GaDivvhS~TKy~~GhsdvlgG~vv~~  222 (391)
T d1cl1a_         183 TWAAGVL--FK---ALD---FGIDVSIQAATKYLVGHSDAMIGTAVCN  222 (391)
T ss_dssp             TTTTTTS--SC---GGG---GTCSEEEEETTTTTTCSSSCCCEEEEEC
T ss_pred             cccchhh--hc---ccc---cccceEEeecchhccccccccccceecc
Confidence            9876443  22   233   389999999999987654  34555543

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.3e-10  Score=108.13  Aligned_cols=161  Identities=18%  Similarity=0.064  Sum_probs=115.0

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 018437           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (356)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~  169 (356)
                      .|....+|+.    ++++.|.+.       .+.+++|..|+..+ ..+..             .+++|+++...+.....
T Consensus        54 nPT~~~lE~~----la~LE~~~~-------a~~~sSGmaAi~~~-l~~l~-------------~gd~iv~~~~~yg~t~~  108 (393)
T d1n8pa_          54 NPNRENLERA----VAALENAQY-------GLAFSSGSATTATI-LQSLP-------------QGSHAVSIGDVYGGTHR  108 (393)
T ss_dssp             CHHHHHHHHH----HHHHTTCSE-------EEEESCHHHHHHHH-HHTSC-------------SSCEEEEESSCCHHHHH
T ss_pred             ChHHHHHHHH----HHHHhCCce-------EEEecCchhHHHhh-hhccc-------------CCCeeeeeeeecccchh
Confidence            4566666655    888888764       56677776666433 33322             14688888777766444


Q ss_pred             HHH----hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEec
Q 018437          170 FAR----YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (356)
Q Consensus       170 ~~~----~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~  245 (356)
                      .+.    .+|+++.+++.       +.+++++++++++++|++-.|+||+..+.||++|+++|+++..++  +++++||.
T Consensus       109 ~~~~~l~~~gi~~~~~~~-------~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~--g~~lvVDn  179 (393)
T d1n8pa_         109 YFTKVANAHGVETSFTND-------LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQ--DVILVVDN  179 (393)
T ss_dssp             HHHHTSTTTCSCCEEESS-------HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTT--TCEEEEEC
T ss_pred             hhhhhhhcccceeEEeec-------chHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccC--CceEEEec
Confidence            443    55777776642       346799999999999999999999999999999999999542211  89999999


Q ss_pred             ccccccccccCCCCcccccCCCceEEEEcCCcCCCCCc--CeeEEEEeC
Q 018437          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRT  292 (356)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~g~l~~~~  292 (356)
                      .++.++.  +.   +++   .|+|.+.-|.-|++.+..  -.|+++.++
T Consensus       180 T~atP~~--~~---Pl~---~GADiVvhS~TKyi~GhsDv~~G~v~~~~  220 (393)
T d1n8pa_         180 TFLSPYI--SN---PLN---FGADIVVHSATKYINGHSDVVLGVLATNN  220 (393)
T ss_dssp             TTTHHHH--CC---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEESC
T ss_pred             CccCccc--CC---chh---hCCCEEEEccccccCCCCccccceeeecc
Confidence            9986544  22   233   389999999999987643  346666554

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.12  E-value=3.7e-11  Score=113.53  Aligned_cols=167  Identities=12%  Similarity=0.047  Sum_probs=113.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHH
Q 018437           93 TTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR  172 (356)
Q Consensus        93 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~vi~s~~~h~s~~~~~~  172 (356)
                      ..+|++++++.....-|...+   ...+++++|++|++..++.++...-.     ...-..+++||++.|.|+.|...++
T Consensus       102 ~~~L~~~i~~lh~~~gna~t~---~~~IvvG~Gsteli~~~~~AL~~~~~-----~~~~~pg~~Vv~~~P~y~~Y~~~~~  173 (425)
T d2hoxa1         102 SFELEKTIKELHEVVGNAAAK---DRYIVFGVGVTQLIHGLVISLSPNMT-----ATPDAPESKVVAHAPFYPVFREQTK  173 (425)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCT---TCEEEEESHHHHHHHHHHHHHSCCTT-----TCTTSCCEEEEECSSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhhCCCCCC---CCEEEECCCHHHHHHHHHHHhccccc-----cccCCCCCEEEEecCccccHHHHHH
Confidence            357777777655444443331   23489999999999999998743100     0000124689999999999999999


Q ss_pred             hhCCeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCcccccCCHHHHHHHHHHhhhccCCCCcEEEecccccccc
Q 018437          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (356)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~  252 (356)
                      ++|.+...       +.+|.+.++++++++++++++++||||||.+..       +-.+      ++++++|++|.+...
T Consensus       174 ~~~~~~~~-------~~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~------~~~~I~DEaY~~~~f  233 (425)
T d2hoxa1         174 YFDKKGYV-------WAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIK------GCKSIYDMVYYWPHY  233 (425)
T ss_dssp             HSCBTTEE-------EEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSST------TCEEEEECTTCSTTT
T ss_pred             HcCCCCCc-------cCCCHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhh------CCEEEEeccccCccc
Confidence            98876543       555666778888889999999999999998731       1124      889999999964221


Q ss_pred             cccCCCCcccccCCCceEEEEcCCcCC-CCCcCeeEEEEeCCC
Q 018437          253 PFLYPDLEWDFRLPLVKSINVSGHKYG-LVYAGVGWVVWRTKD  294 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~Ds~~~~~hK~l-~~P~g~g~l~~~~~~  294 (356)
                         .+-.  .  ...=+.+..+..|.. .+.+.+|++++.++.
T Consensus       234 ---~~~~--~--~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~  269 (425)
T d2hoxa1         234 ---TPIK--Y--KADEDILLFTMSKFTGHSGSRFGWALIKDES  269 (425)
T ss_dssp             ---SCCC--S--CBCCSEEEEEHHHHTSCGGGCCEEEEECCHH
T ss_pred             ---cchh--h--hcCCeEEEEeCHHhccCcchheeeEEeCCHH
Confidence               1111  1  111245666788974 477899999887653

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=98.83  E-value=1.4e-07  Score=87.56  Aligned_cols=191  Identities=12%  Similarity=0.004  Sum_probs=115.6

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.+.+....+...+  .+.+.++.+.+.+......     ....++++|+||+..|++.++...      
T Consensus        54 ~hp~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~~~-----~~v~f~~sGseA~e~Aik~Ar~~t------  120 (387)
T d1vefa1          54 GNPEVVEAVKRQAETLMAMPQTLP--TPMRGEFYRTLTAILPPEL-----NRVFPVNSGTEANEAALKFARAHT------  120 (387)
T ss_dssp             TCHHHHHHHHHHHHHCCCCCTTSC--CHHHHHHHHHHHHTSCTTE-----EEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CcHHHHHHHHHHHHhhcccccccC--CchHHHHHHHhhhhccccc-----eeeccccCchHHHHHHHHHHHhhc------
Confidence            357888888887765433332222  2233344444555433321     236889999999999999998752      


Q ss_pred             cCCCCCCCeEEecCC-CcchHHHHHHhhC------------CeeEEEEecCCccccCHHHHHHHHhhCceEEEEecCCCc
Q 018437          148 QGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (356)
                       |    +.+|+.-.. .|-...-+....|            -.+..+|.      -|++.|++.++++..+|++--....
T Consensus       121 -~----r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~------~d~~~l~~~~~~~iAavi~EPi~g~  189 (387)
T d1vefa1         121 -G----RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY------NDVEALKRAVDEETAAVILEPVQGE  189 (387)
T ss_dssp             -S----CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT------TCHHHHHHHCCTTEEEEEECSEETT
T ss_pred             -c----cceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC------CCHHHHHHhcCCCeEEEEEECCCCC
Confidence             1    345655444 3433333332222            12344442      2789999999888888776544444


Q ss_pred             ccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCCcCeeEEEE
Q 018437          215 TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (356)
Q Consensus       215 tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~  290 (356)
                      .|.+.+    +++|.++|++|      |+++++|+++.|+..  .........-.-..|.++++  |.+.+.+..+.++.
T Consensus       190 ~G~~~~~~~~l~~l~~lc~~~------g~llI~DEV~tGfgR--~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~~~  259 (387)
T d1vefa1         190 GGVRPATPEFLRAAREITQEK------GALLILDEIQTGMGR--TGKRFAFEHFGIVPDILTLA--KALGGGVPLGVAVM  259 (387)
T ss_dssp             TTSEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEE
T ss_pred             CCCccCCHHHHHHHHHHHHHc------CceEEecccccccCc--cCCCcccccCCcCCceeeec--ccCCCCcccccccc
Confidence            566544    89999999999      999999999987533  11000011001235888755  77666566677766


Q ss_pred             eC
Q 018437          291 RT  292 (356)
Q Consensus       291 ~~  292 (356)
                      ++
T Consensus       260 ~~  261 (387)
T d1vefa1         260 RE  261 (387)
T ss_dssp             EH
T ss_pred             ce
Confidence            64

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=6e-07  Score=83.60  Aligned_cols=198  Identities=12%  Similarity=-0.028  Sum_probs=114.5

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++..........  .....++.+.+.++.+.+.       ..++++|++|+..|++.++......  
T Consensus        57 h~~p~i~~Av~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------v~~~~sGseA~e~Aik~ar~~~~~~--  125 (404)
T d2byla1          57 HCHPKIVNALKSQVDKLTLTSRAFY--NNVLGEYEEYITKLFNYHK-------VLPMNTGVEAGETACKLARKWGYTV--  125 (404)
T ss_dssp             BTCHHHHHHHHHHHTTCCCCCTTEE--ESSHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHHHHHHHT--
T ss_pred             CCCHHHHHHHHHHHhhCCCcccccc--cchHHHHHHhhhhcccccc-------cccccCccccchhHHHHHHHHhhhc--
Confidence            3458899999887765322211111  1122234456778877753       7899999999999999998653221  


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHHhh-------CC-----eeEEEEecCCccccCHHHHHHHHhhC-ceEEEEecCC
Q 018437          147 EQGKPYDKPNIVT-GANVQVCWEKFARYF-------EV-----ELKEVKLEEGYYVMNPVKAVELVDEN-TICVAAILGS  212 (356)
Q Consensus       147 ~~g~~~~~~~vi~-s~~~h~s~~~~~~~~-------G~-----~v~~v~~~~~~~~~d~~~L~~~i~~~-~~~v~~~~~~  212 (356)
                       ++....+..++. ....|.....+....       +.     .+..+|.      -|++++++++.++ ..+|++--..
T Consensus       126 -~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~------~d~~~l~~~l~~~~iAaviiEPi~  198 (404)
T d2byla1         126 -KGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY------NDLPALERALQDPNVAAFMVEPIQ  198 (404)
T ss_dssp             -TCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT------TCHHHHHHHHTSTTEEEEEECSSB
T ss_pred             -cccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc------cCHHHHHHhcCCCCeEEEEECCcc
Confidence             111112334543 444454333322221       11     1333432      2688999999754 4556554444


Q ss_pred             CcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-cCeeE
Q 018437          213 TLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGW  287 (356)
Q Consensus       213 ~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~  287 (356)
                      ...|.+.+    +++|.++|++|      |+++|+|+++.|+..  ...-..++..--..|.++++  |.+.+. ...|.
T Consensus       199 g~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEV~tGfgR--~G~~~a~~~~gv~PDi~~~g--K~l~gG~~p~~a  268 (404)
T d2byla1         199 GEAGVVVPDPGYLMGVRELCTRH------QVLFIADEIQTGLAR--TGRWLAVDYENVRPDIVLLG--KALSGGLYPVSA  268 (404)
T ss_dssp             TTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEE
T ss_pred             CCCCCccCCHHHHHHHHHHHHhc------CeEEEeecccccccc--ccccchhhhcCCCCCEEEEC--chhhCCCcccee
Confidence            44565533    89999999999      999999999977533  11111111111135877654  766554 46678


Q ss_pred             EEEeC
Q 018437          288 VVWRT  292 (356)
Q Consensus       288 l~~~~  292 (356)
                      ++.++
T Consensus       269 v~~~~  273 (404)
T d2byla1         269 VLCDD  273 (404)
T ss_dssp             EEECH
T ss_pred             eeech
Confidence            87764

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=98.76  E-value=2.4e-07  Score=87.05  Aligned_cols=189  Identities=13%  Similarity=-0.016  Sum_probs=112.5

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.++.........    .....+.+.+.++.+..      ....++++|+||+..|++.++...      
T Consensus        69 ~hp~i~~ai~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~------~~v~f~~sGseA~e~Alk~ar~~t------  132 (427)
T d2gsaa_          69 AHPEVIEALKVAMEKGTSFGAPC----ALENVLAEMVNDAVPSI------EMVRFVNSGTEACMAVLRLMRAYT------  132 (427)
T ss_dssp             TCHHHHHHHHHHHTTCSCCSSCC----HHHHHHHHHHHHHSTTC------SEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CcHHHHHHHHHHHHhcCccccch----hHHHHHHHHHHhhCCcc------ccccccCCcHHHHHHHHHHHHHhc------
Confidence            45889999988887533222111    23445566677765432      236899999999999999987652      


Q ss_pred             cCCCCCCCeEEecCCCcc-hHHHHH-------HhhCCe----------eEEEEecCCccccCHHHHHHHHhh---CceEE
Q 018437          148 QGKPYDKPNIVTGANVQV-CWEKFA-------RYFEVE----------LKEVKLEEGYYVMNPVKAVELVDE---NTICV  206 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~h~-s~~~~~-------~~~G~~----------v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v  206 (356)
                       |    +.+|+.-..+|+ ...-+.       ...+..          ...+..+    .-|++.|++.+++   +..+|
T Consensus       133 -~----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~~~le~~~~~~~~~iaav  203 (427)
T d2gsaa_         133 -G----RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP----YNDLEAVKALFAENPGEIAGV  203 (427)
T ss_dssp             -C----CCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC----TTCHHHHHHHHTTSTTTEEEE
T ss_pred             -C----CCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC----cchHHHHHHHHHhCCCCeEEE
Confidence             1    356665444332 211110       111111          0111111    2378999999975   45566


Q ss_pred             EEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC
Q 018437          207 AAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY  282 (356)
Q Consensus       207 ~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P  282 (356)
                      ++--.....|.+-|    +++|.++|++|      |+++++|+++.|+-....   ...+..--..|.++++  |.+++.
T Consensus       204 i~Epi~g~~G~~~~~~~~l~~l~~lc~~~------~~llI~DEv~tG~r~g~~---~~~~~~gi~PDi~~~g--K~lggG  272 (427)
T d2gsaa_         204 ILEPIVGNSGFIVPDAGFLEGLREITLEH------DALLVFDEVMTGFRIAYG---GVQEKFGVTPDLTTLG--KIIGGG  272 (427)
T ss_dssp             EECSSBCSSSCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTBTTTBTT---CHHHHTTCCCSEEEEC--GGGGTT
T ss_pred             EEcCCcCCCCCccCCHHHHHHHHHHHHHh------ceeeeeccccccceeccc---chHHhcCCCHHHHhhh--hccCCC
Confidence            66555555577766    99999999999      999999999987522111   0111111135777755  555555


Q ss_pred             cCeeEEEEeC
Q 018437          283 AGVGWVVWRT  292 (356)
Q Consensus       283 ~g~g~l~~~~  292 (356)
                      ...|.++.++
T Consensus       273 ~p~~a~~~~~  282 (427)
T d2gsaa_         273 LPVGAYGGKR  282 (427)
T ss_dssp             SCCEEEEECH
T ss_pred             cceeeeeehH
Confidence            5556676664

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.55  E-value=1.6e-05  Score=73.68  Aligned_cols=197  Identities=11%  Similarity=-0.055  Sum_probs=108.0

Q ss_pred             ChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHHh
Q 018437           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (356)
                      .+|.+.+++.+.++........... .. ...+.+.+.++.+.+.       ..++.+|++|+..+++.++.......  
T Consensus        56 ~~p~v~~Ai~~q~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~-------v~~~~sgs~a~~~a~k~ar~~~~~~~--  124 (404)
T d1z7da1          56 CHPNILNAMINQAKNLTICSRAFFS-VP-LGICERYLTNLLGYDK-------VLMMNTGAEANETAYKLCRKWGYEVK--  124 (404)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTSEE-HH-HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHHHHHHHTS--
T ss_pred             CcHHHHHHHHHHHHhCCCcccccch-HH-HHHHHHhhhhccccce-------eeeeccccchHHHHHHHHHHHHhhcc--
Confidence            3588999988777643222222111 11 2234455777777653       67899999999999999887543210  


Q ss_pred             cCCCCCCCeEEecCCC-cchHHHHHHhhCCe------------eEEEEecCCccccCHHHHHHHHhh-CceEEEEecCCC
Q 018437          148 QGKPYDKPNIVTGANV-QVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGST  213 (356)
Q Consensus       148 ~g~~~~~~~vi~s~~~-h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~  213 (356)
                      .+ ......++..... |..........+..            +..+|.      -+.+.|+..+.+ +..+|++--...
T Consensus       125 ~~-~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~iAavi~EPi~g  197 (404)
T d1z7da1         125 KI-PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY------DDLEALEEELKDPNVCAFIVEPIQG  197 (404)
T ss_dssp             CC-CTTCCEEEEETTC--------------------------CEEEECT------TCHHHHHHHHTSTTEEEEEECSSBS
T ss_pred             cc-cccccccccccccCCCCcccccccccccccccCCCCCCcccccccc------chHHHHHHHhcCCCEEEEEEEEEcC
Confidence            00 0111234444333 32222222221111            122221      256788888765 445666555555


Q ss_pred             cccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCCCCC-cCeeEE
Q 018437          214 LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWV  288 (356)
Q Consensus       214 ~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l  288 (356)
                      ..|.+-|    +++|.++|++|      |+++++|+++.|+..  ...-..+...--..|.++++  |.+.+. ..+|.+
T Consensus       198 ~~G~~~~~~~fl~~l~~lc~~~------g~llI~DEV~tGfgR--tG~~~~~e~~gv~PDivt~g--K~l~gG~~p~~~v  267 (404)
T d1z7da1         198 EAGVIVPSDNYLQGVYDICKKY------NVLFVADEVQTGLGR--TGKLLCVHHYNVKPDVILLG--KALSGGHYPISAV  267 (404)
T ss_dssp             TTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEE
T ss_pred             CCCCccCCHHHHHHHHHHHHHc------CCEEEEEcCccCCCc--ccccccccccCCCCCEEEEc--ccccCCCCCcccc
Confidence            5576655    89999999999      999999999976532  11100111111246887754  776544 456777


Q ss_pred             EEeC
Q 018437          289 VWRT  292 (356)
Q Consensus       289 ~~~~  292 (356)
                      +.++
T Consensus       268 ~~~~  271 (404)
T d1z7da1         268 LAND  271 (404)
T ss_dssp             EECH
T ss_pred             cchH
Confidence            7764

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=7.5e-06  Score=76.46  Aligned_cols=201  Identities=9%  Similarity=-0.078  Sum_probs=113.0

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.+....... ......+.+.++.+.+.+++.-+.    .....++++||||+..|++.++...     
T Consensus        56 h~~p~i~~ai~~q~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~----~~~v~f~~sGseA~e~Alk~ar~~t-----  125 (425)
T d1sffa_          56 HLHPKVVAAVEAQLKKLSHTC-FQVLAYEPYLELCEIMNQKVPGDF----AKKTLLVTTGSEAVENAVKIARAAT-----  125 (425)
T ss_dssp             BTCHHHHHHHHHHTTTCSCCC-TTTEECHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHHH-----
T ss_pred             CCcHHHHHHHHHHHhhcCCcc-cccccCcHHHHHHHHHHhhhhhcc----cceeeeeccccchhhhHHHHhhhhh-----
Confidence            345889999988776432211 111223344567777888875432    1247889999999999999998752     


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHHhhCC-------------eeEEEEecC---CccccCH-HHHHHHHh-----hCc
Q 018437          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV-------------ELKEVKLEE---GYYVMNP-VKAVELVD-----ENT  203 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~-~h~s~~~~~~~~G~-------------~v~~v~~~~---~~~~~d~-~~L~~~i~-----~~~  203 (356)
                        |    +.+|+.-.. .|-...-+....|-             .....+.+.   +....+. +.+++.+.     .+.
T Consensus       126 --~----r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  199 (425)
T d1sffa_         126 --K----RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDI  199 (425)
T ss_dssp             --T----CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGE
T ss_pred             --c----ccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccce
Confidence              1    345665444 44433333333221             122222211   1111111 11122111     235


Q ss_pred             eEEEEecCCCcccccC----CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC
Q 018437          204 ICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (356)
Q Consensus       204 ~~v~~~~~~~~tG~~~----~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l  279 (356)
                      .+|++--.....|.+.    -++.|.++|++|      |+++++|+++.|+...  ..-..++..--..|.+++  -|.+
T Consensus       200 aavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~------gillI~DEV~tG~gR~--g~~~a~~~~gv~PDi~~~--gK~l  269 (425)
T d1sffa_         200 AAIVIEPVQGEGGFYASSPAFMQRLRALCDEH------GIMLIADEVQSGAGRT--GTLFAMEQMGVAPDLTTF--AKSI  269 (425)
T ss_dssp             EEEEECSBCTTTTSCBCCHHHHHHHHHHHHHH------TCEEEEECTTTTTTTT--SSSSGGGGTTSCCSEEEE--CGGG
T ss_pred             EEEEecCccCCCCcccCCHHHHHHHHHHHHHc------CceEEeccccccCCCc--chhhHHHhcCCCccceec--cccc
Confidence            5666654444556552    478999999999      9999999999874331  110111111124688775  4877


Q ss_pred             CCCcCeeEEEEeCC
Q 018437          280 LVYAGVGWVVWRTK  293 (356)
Q Consensus       280 ~~P~g~g~l~~~~~  293 (356)
                      ++.+..|.++.+++
T Consensus       270 ~gG~P~~av~~~~~  283 (425)
T d1sffa_         270 AGGFPLAGVTGRAE  283 (425)
T ss_dssp             GTSSCCEEEEEEHH
T ss_pred             CCCcceEEEEEcHH
Confidence            77677899988764

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.47  E-value=5.6e-06  Score=77.47  Aligned_cols=198  Identities=14%  Similarity=-0.095  Sum_probs=107.1

Q ss_pred             CChHHHHHHHHHHhcccCCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      +.+|.+.+++.+.++........+..  ....++.+.+.++..-..     ....++++||||+..|++.++...     
T Consensus        57 h~~p~v~~ai~~q~~~~~~~~~~~~~--~~~~~la~~L~~~~~~~~-----~~v~f~~sGseA~e~Alk~Ar~~t-----  124 (431)
T d1zoda1          57 HCHPEIVSVIGEYAGKLDHLFSEMLS--RPVVDLATRLANITPPGL-----DRALLLSTGAESNEAAIRMAKLVT-----  124 (431)
T ss_dssp             BTCHHHHHHHHHHHHHCCCCCTTCCC--HHHHHHHHHHHHHSCTTC-----CEEEEESCHHHHHHHHHHHHHHHH-----
T ss_pred             CCCHHHHHHHHHHHhhcccccccccc--HHHHHHHHHHHHhCCccc-----ceeeecccccchHHHHHHHHHHhc-----
Confidence            34588999988877653322222222  222356666777763221     237899999999999999998652     


Q ss_pred             hcCCCCCCCeEEec-CCCcchHHHHHHhhC-----------CeeEEEEecCC--------cccc---CHHHHHHHHh---
Q 018437          147 EQGKPYDKPNIVTG-ANVQVCWEKFARYFE-----------VELKEVKLEEG--------YYVM---NPVKAVELVD---  200 (356)
Q Consensus       147 ~~g~~~~~~~vi~s-~~~h~s~~~~~~~~G-----------~~v~~v~~~~~--------~~~~---d~~~L~~~i~---  200 (356)
                        |    +.+|+.- ...|-...-+....+           .....++....        ....   +.+.+...+.   
T Consensus       125 --~----r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (431)
T d1zoda1         125 --G----KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS  198 (431)
T ss_dssp             --T----CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHC
T ss_pred             --C----CcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhc
Confidence              1    3455544 344443333332211           12333433210        0011   2233333332   


Q ss_pred             -hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcC
Q 018437          201 -ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSG  275 (356)
Q Consensus       201 -~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~  275 (356)
                       ++..+|++--....-|.+.+    +++|.++|++|      |+++|+|+++.|+..  ...-......--..|.++++ 
T Consensus       199 ~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~------gillI~DEV~tG~gR--tG~~~~~~~~gv~PDi~~~g-  269 (431)
T d1zoda1         199 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR------GMLLILDEAQTGVGR--TGTMFACQRDGVTPDILTLS-  269 (431)
T ss_dssp             CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEEC-
T ss_pred             cccccceeeccccccCCccCCCHHHHHHHHHHHHhc------CceEEeccccccccc--cccccccccCCCCcchhccc-
Confidence             23455555444444455533    89999999999      999999999987433  11100111111246777755 


Q ss_pred             CcCCCCCcCeeEEEEeC
Q 018437          276 HKYGLVYAGVGWVVWRT  292 (356)
Q Consensus       276 hK~l~~P~g~g~l~~~~  292 (356)
                       |.+.+....+.++.++
T Consensus       270 -K~l~gG~p~~av~~~~  285 (431)
T d1zoda1         270 -KTLGAGLPLAAIVTSA  285 (431)
T ss_dssp             -HHHHTTSSCEEEEECH
T ss_pred             -cccccccccceeeeee
Confidence             6655545556666654

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=2.3e-05  Score=73.11  Aligned_cols=202  Identities=11%  Similarity=-0.054  Sum_probs=108.6

Q ss_pred             ChHHHHHHHHHHhcccCCC-cccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHHHHHHH
Q 018437           68 MEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (356)
Q Consensus        68 ~~~~v~~~i~~~~~~~~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (356)
                      .+|.+.+++.+.++...+. ......  +-..++.+++.+..+.+.     ....++++|+||+..|++.++.....+  
T Consensus        60 ~~p~i~~Ai~~q~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~-----~~v~f~~sGseA~e~A~k~ar~~~~~~--  130 (429)
T d1s0aa_          60 NHPQLNAAMKSQIDAMSHVMFGGITH--APAIELCRKLVAMTPQPL-----ECVFLADSGSVAVEVAMKMALQYWQAK--  130 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCCSSEEC--HHHHHHHHHHHHHSCTTC-----CEEEEESSHHHHHHHHHHHHHHHHHHH--
T ss_pred             CcHHHHHHHHHHHHhcCCcccCCccc--hHHHHHHHHHHhhhccCc-----ceeeeccccccchhhhhhhhhheeecc--
Confidence            4588999988777643221 111111  122344556666665443     347899999999999999998764322  


Q ss_pred             hcCCCCCCCeEEecCCC-cchHHHHHHhhC-------------CeeEEEEecC--Cc---cccCHHHHHHHHhh---Cce
Q 018437          147 EQGKPYDKPNIVTGANV-QVCWEKFARYFE-------------VELKEVKLEE--GY---YVMNPVKAVELVDE---NTI  204 (356)
Q Consensus       147 ~~g~~~~~~~vi~s~~~-h~s~~~~~~~~G-------------~~v~~v~~~~--~~---~~~d~~~L~~~i~~---~~~  204 (356)
                        |  ..+.+|+....+ |-...-+....|             ......|...  ..   ..-+++++++.+.+   +..
T Consensus       131 --g--~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia  206 (429)
T d1s0aa_         131 --G--EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIA  206 (429)
T ss_dssp             --T--CCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEE
T ss_pred             --c--ccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccc
Confidence              1  113456655444 444433333322             1123333221  11   12345555555542   344


Q ss_pred             EEEEecCC-Cccccc--C--CHHHHHHHHHHhhhccCCCCcEEEecccccccccccCCCCcccccCCCceEEEEcCCcCC
Q 018437          205 CVAAILGS-TLTGEF--E--DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (356)
Q Consensus       205 ~v~~~~~~-~~tG~~--~--~i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l  279 (356)
                      +|++.-.. +.-|..  .  =+++|.++|++|      |+++|+|+++.|+..  ......+..---..|.++++  |.+
T Consensus       207 avivEPi~~~~gg~~~~~~~fl~~lr~lc~~~------gillI~DEV~tGfGR--tG~~~~~~~~~v~PDi~~~g--K~l  276 (429)
T d1s0aa_         207 AVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE------GILLIADEIATGFGR--TGKLFACEHAEIAPDILCLG--KAL  276 (429)
T ss_dssp             EEEECSSEECTTTCEEBCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGG
T ss_pred             eeeecceeccCCCccCCCHHHHHHHHHHHHHc------Ccceehhhccccccc--cccccccccceecccccccc--ccc
Confidence            44444222 332332  2  289999999999      999999999987533  11111111111245777755  554


Q ss_pred             CCC-cCeeEEEEeC
Q 018437          280 LVY-AGVGWVVWRT  292 (356)
Q Consensus       280 ~~P-~g~g~l~~~~  292 (356)
                      .+. ...|.++.++
T Consensus       277 ~gG~~p~~av~~~~  290 (429)
T d1s0aa_         277 TGGTMTLSATLTTR  290 (429)
T ss_dssp             GTSSSCCEEEEECH
T ss_pred             ccccccccchhhHH
Confidence            333 4567777664

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.85  E-value=0.00094  Score=62.40  Aligned_cols=172  Identities=12%  Similarity=-0.023  Sum_probs=90.9

Q ss_pred             CChHHHHHHHHHHhccc-----CCCcccCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCChhHHHHHHHHHHHHHH
Q 018437           67 WMEPECDKLVMASINKN-----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (356)
Q Consensus        67 ~~~~~v~~~i~~~~~~~-----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (356)
                      +.+|.+.+++.+.++..     .......+.  .+.+++.+.+.++.+-+.     ....++++|+||+..|++.++...
T Consensus        69 h~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~--~~a~~lae~l~~~~~~~~-----~~v~f~~sGseAve~Aik~Ar~~~  141 (461)
T d1ohwa_          69 YSHPALVKLVQQPQNVSTFINRPALGILPPE--NFVEKLRESLLSVAPKGM-----SQLITMACGSCSNENAFKTIFMWY  141 (461)
T ss_dssp             BTCHHHHHHHHCGGGHHHHHCCCCTTTSCBT--THHHHHHHTGGGGCCTTC-----CEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhhhhhcccccccccchH--HHHHHHHHHHHhhhccCc-----ceeeeecchhhhhHHHHHHHHHHh
Confidence            34578888887655431     111111111  122233344444433322     347899999999999999998765


Q ss_pred             HHHHHhc---------------CCCCCCCeEEec-CCCcchHHHHHHhhCC-----------eeEEEEecCCcc------
Q 018437          142 QQKRKEQ---------------GKPYDKPNIVTG-ANVQVCWEKFARYFEV-----------ELKEVKLEEGYY------  188 (356)
Q Consensus       142 ~~~~~~~---------------g~~~~~~~vi~s-~~~h~s~~~~~~~~G~-----------~v~~v~~~~~~~------  188 (356)
                      ..+...+               .....+.+||.- ...|-...-++...|-           .....+.....+      
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (461)
T d1ohwa_         142 RSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFV  221 (461)
T ss_dssp             HHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCH
T ss_pred             hhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcccccccccccccccc
Confidence            4321100               001112356654 4445444443333221           111222211000      


Q ss_pred             -------ccCHHHHHHHHh------hCceEEEEecCCCcccccCC----HHHHHHHHHHhhhccCCCCcEEEeccccccc
Q 018437          189 -------VMNPVKAVELVD------ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (356)
Q Consensus       189 -------~~d~~~L~~~i~------~~~~~v~~~~~~~~tG~~~~----i~~I~~i~~~~~~~~~~~~~l~vD~a~~~~~  251 (356)
                             ..+.+.+++.+.      +++.+|++--.....|.+.+    +++|.++|++|      |+++|+|+++.|+.
T Consensus       222 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~------gillI~DEV~tG~g  295 (461)
T d1ohwa_         222 KENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH------GCAFLVDEVQTGGG  295 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT------TCEEEEECTTTCSS
T ss_pred             cccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhh------Ccceeccccccccc
Confidence                   122445555553      23556666555555555422    78999999999      99999999997753