Citrus Sinensis ID: 018446

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MEGLVSPKTTPRILFPTLNRRPSKFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGPFTR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHccccEEEcccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHccccccEEEEccccccccEEcHHHHHHHHHHccccEEEEEcEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEccHHHHHHHHcccEEEEccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHccccccEEEEEEccEEcccEEccccccHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHccccEEEEEHHHccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHccccEEEEEcEccccccEccHHHHHHHHHccccEEEEEEccccccccc
Coil and Loop (DISEMBL)
meglvspkttprilfptlnrrpskfsivrsvpasamdahrrngvgftpiraqkaetkdgsaTISSVMEDAETALKAKEWEVGMLINEVAAsqgikirrrpptgpplhyvgpfqfriqnegntprnILEEIVWHKdvevtqlkqrrplSMLKNaldnappaRDFIGALMAANQRTGLPALIAEVKkaspsrgilredfdpvEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAgvkcpllcKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELiginnrnletfevdnsntkkllegergeiirqkniivsgpftr
Flexible Loop (DISEMBL)
meglvspkttprilfptlnrrpskfsivrsvpasamdahrrngvgftpiraqkaetkdgsatisSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEvtqlkqrrplSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEvkkaspsrgilredfdPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIEliginnrnletfevdnsntkkllegergeiirqkniivsgpftr
Low Complexity Region (SEG)
MEGLVSPKTTPRILFPTLNRRPSKFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVlgiegieliginnrnleTFEVDNSNTKKLLEGERGEIIRQKNIIVSGPFTR
Disordered region (IsUnstruct)
*************************************************************************LKAKEWEVGMLINEVAASQGIKIRR****GPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQ****************ARDFIGALMAANQRTGLPALIAEVK******GILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDN************EIIRQKNII*******
Disordered Region (DISOPRED)
*************************************************************************************************RRPPTGPPLHYVG**QF*******TP*NILEEIVWHKDVEVTQLKQRRPL*MLKN**DNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGP***
Disordered Region (DISEMBL)
********TTPRILFPTLNRRPSKFSIVRSVPASAMDAHRRNGVGFTPIRAQK*********ISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGPFTR
Disordered Region (DISPRO)
**************************IVR***ASA*D***RNGVGFTPIRAQKAETKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGPF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGLVSPKTTPRILFPTLNRRPSKFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGPFTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
P49572	402	Indole-3-glycerol phospha	no	no	0.994	0.878	0.642	1e-128
B7K0H0	293	Indole-3-glycerol phospha	yes	no	0.681	0.825	0.576	1e-75
Q55508	295	Indole-3-glycerol phospha	N/A	no	0.707	0.850	0.564	2e-75
B0JTM2	296	Indole-3-glycerol phospha	yes	no	0.701	0.841	0.593	6e-75
B1WQE4	294	Indole-3-glycerol phospha	yes	no	0.707	0.853	0.540	1e-71
B8HP79	302	Indole-3-glycerol phospha	yes	no	0.698	0.821	0.558	2e-71
Q3AL94	295	Indole-3-glycerol phospha	yes	no	0.721	0.867	0.515	3e-70
Q10ZM7	297	Indole-3-glycerol phospha	yes	no	0.707	0.845	0.513	2e-69
A9BBR3	295	Indole-3-glycerol phospha	yes	no	0.707	0.850	0.521	4e-69
B0CEU2	303	Indole-3-glycerol phospha	yes	no	0.701	0.821	0.523	1e-68

>sp|P49572|TRPC_ARATH Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/361 (64%), Positives = 285/361 (78%), Gaps = 8/361 (2%)

Query: 1   MEGLVSPKTTP-RILFPTLNRRPSKFSIVRSVPASAMD--AHRRNGVGFTPIRAQKAETK 57
           MEGLV  +  P ++  P+L R  +  SI RS+   AMD   + R    F+ IRAQ+++ K
Sbjct: 1   MEGLVPVQRLPIKVASPSLYRCNNSVSIRRSISGFAMDRKINFRAPSQFS-IRAQQSDLK 59

Query: 58  DGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQ 117
           +  A  SS +ED    L+ KEWEV M   E+A SQGI+IRR+PP+  PL Y GPF+ R+ 
Sbjct: 60  ESLAVSSSSVEDKGNVLRIKEWEVEMYQEELAISQGIRIRRKPPSKAPLGYSGPFELRLH 119

Query: 118 N-EGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGL 176
           N + ++PRNILEEI W+KDVEV+++K+  PL +LK A+++APP RDF+GAL  A++RTG 
Sbjct: 120 NNDADSPRNILEEITWYKDVEVSRMKELNPLDVLKKAVEDAPPTRDFVGALRMAHKRTGF 179

Query: 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA 236
           P LIAEVKKASPSRGIL+E+FDPVEIA++YEKGGAACLS+LTD+KYF+G FENLEA+RSA
Sbjct: 180 PGLIAEVKKASPSRGILKENFDPVEIAQAYEKGGAACLSVLTDQKYFQGGFENLEAIRSA 239

Query: 237 GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH 296
           GVKCPLLCKEF+VD WQIYYARTKGADAVLLIAAVL DL+I ++ KICK L L ALVEVH
Sbjct: 240 GVKCPLLCKEFVVDPWQIYYARTKGADAVLLIAAVLADLEITFLLKICKKLSLAALVEVH 299

Query: 297 DEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV---SGPF 353
           DEREM RVLGIEGIEL+GINNR+LETFEVD SNTKKLLEGE G  IR++++IV   SG F
Sbjct: 300 DEREMGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGEHGRQIRERDMIVVGESGLF 359

Query: 354 T 354
           T
Sbjct: 360 T 360

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 8

>sp|B7K0H0|TRPC_CYAP8 Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=trpC PE=3 SV=1

 Score =  283 bits (725), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 143/248 (57%), Positives = 184/248 (74%), Gaps = 6/248 (2%)

Query: 94  IKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNA 153
           ++IRRR P  PP+  V   +++++     PR+ILEEIVWHK+ EV +L++  PL  L+  
Sbjct: 1   MQIRRRSPN-PPVE-VDTLRYQVKVPDGEPRHILEEIVWHKEKEVDRLRESLPLLELRKQ 58

Query: 154 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC 213
           + + PP +DF+GA+     +   PALIAEVKKASPS+G++REDFDPV IA++Y KGGA+C
Sbjct: 59  VQHLPPPQDFLGAITQGKTQ---PALIAEVKKASPSKGVIREDFDPVAIAQAYVKGGASC 115

Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273
           LS+LTD K+F+GSFENL  VR + V  PLLCKEFI+  +QIY ARTKGADAVLLIAA+L 
Sbjct: 116 LSVLTDAKFFQGSFENLALVRQS-VDLPLLCKEFILYPYQIYLARTKGADAVLLIAAILS 174

Query: 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL 333
           D D+ Y  KI + LG+TAL+EVH   E+DRVL IEG+ LIGINNRNLETFEVD   T +L
Sbjct: 175 DRDLSYFLKIIQTLGMTALIEVHSLTELDRVLAIEGVSLIGINNRNLETFEVDLKTTSQL 234

Query: 334 LEGERGEI 341
           L   R +I
Sbjct: 235 LAARRDKI 242

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q55508|TRPC_SYNY3 Indole-3-glycerol phosphate synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trpC PE=3 SV=1

 Score =  283 bits (723), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/257 (56%), Positives = 189/257 (73%), Gaps = 6/257 (2%)

Query: 94  IKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNA 153
           ++IRRRPP  PP+  V   Q++I++    PR+ILEEIVWHK+ EV Q ++  PL  L++ 
Sbjct: 1   MEIRRRPPN-PPIK-VDILQYQIKHPEAAPRHILEEIVWHKEKEVAQRRELVPLVKLQSL 58

Query: 154 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC 213
           + +  P  DF+GAL    Q    PALIAEVKKASPS+GI+R DFDPV IA++YE GGA C
Sbjct: 59  VKDMTPPLDFVGAL---RQSPRQPALIAEVKKASPSKGIIRADFDPVAIAKAYEAGGANC 115

Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273
           LS+LTDEK+F+GSFENL+ VRSA V+ PLLCKEFI+  +QIY AR++GADAVLLIAA+L 
Sbjct: 116 LSVLTDEKFFQGSFENLQLVRSA-VQLPLLCKEFIIYPYQIYLARSRGADAVLLIAAILS 174

Query: 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL 333
           D D+RY  KI + LG+ ALVEVH   EMDRVL ++G++LIG+NNRNL+TF VD   T+ L
Sbjct: 175 DKDLRYFLKIIEGLGMAALVEVHTLEEMDRVLALDGVQLIGVNNRNLQTFTVDLQTTEDL 234

Query: 334 LEGERGEIIRQKNIIVS 350
               R ++ +    +VS
Sbjct: 235 FAQRREQLTQGDITLVS 251

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|B0JTM2|TRPC_MICAN Indole-3-glycerol phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=trpC PE=3 SV=1

 Score =  281 bits (719), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 152/256 (59%), Positives = 188/256 (73%), Gaps = 7/256 (2%)

Query: 94  IKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNA 153
           ++IRR+ P   P   V    + ++     P+NILEEIVWHK++EV +L++R PL  L+  
Sbjct: 1   MQIRRKHPN--PAVKVESLSYVVKVPEAQPQNILEEIVWHKEIEVDKLRERLPLLELRQK 58

Query: 154 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC 213
           + N  P  DF+ AL    Q    PALIAEVKKASPS+G++ EDFDPV IAR+YE+GGA C
Sbjct: 59  IANTAPPCDFLAAL---KQGKTQPALIAEVKKASPSKGVILEDFDPVAIARTYEQGGATC 115

Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273
           LS+LTD K+F+GS+ENL  VR A V  PLLCKEFI+  +QIYYAR+KGADAVLLIAA+L 
Sbjct: 116 LSVLTDSKFFQGSYENLTLVRQA-VSLPLLCKEFILYPYQIYYARSKGADAVLLIAAILS 174

Query: 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL 333
           D D+ Y  KI K LG+TALVEVH   E DRVL IEGIELIGINNRNLETF VD  NT++L
Sbjct: 175 DQDLAYFVKIVKGLGMTALVEVHSLAEFDRVLAIEGIELIGINNRNLETFTVDLDNTRQL 234

Query: 334 LEGERGEIIRQKNIIV 349
           LE  RGE +R+K I++
Sbjct: 235 LEA-RGEQVREKGILI 249

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|B1WQE4|TRPC_CYAA5 Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=trpC PE=3 SV=1

 Score =  270 bits (691), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/257 (54%), Positives = 183/257 (71%), Gaps = 6/257 (2%)

Query: 94  IKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNA 153
           ++IRRRPP   P   V   ++++ +      +ILEEIVWHK+ EV +++ R  L  L+  
Sbjct: 1   MQIRRRPPN--PAVEVDILRYQVPDPNGKANHILEEIVWHKEKEVERMRDRLSLLDLRKQ 58

Query: 154 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC 213
             +APPA+DF+GA+   +Q    PALIAEVKKASPS+G++REDF+PV IA++Y +GGA+C
Sbjct: 59  EQSAPPAKDFLGAI---SQGKTQPALIAEVKKASPSKGVIREDFEPVAIAQAYVQGGASC 115

Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273
           LS+LTD K+F+GSF+NL  VR A V  PLLCKEFI+  +QIY AR KGADA+LLIAA+L 
Sbjct: 116 LSVLTDSKFFQGSFDNLALVRQA-VDIPLLCKEFIIYPYQIYLARVKGADAILLIAAILK 174

Query: 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL 333
           D D++Y+ KI   LG+T LVEVH   E+DRVL IEG+ L+GINNRNLETFEV    T  L
Sbjct: 175 DSDLQYLIKIIHGLGMTPLVEVHSLAELDRVLAIEGVSLVGINNRNLETFEVSLETTTNL 234

Query: 334 LEGERGEIIRQKNIIVS 350
           +   + EI  +   IVS
Sbjct: 235 ITARQDEIKERGIYIVS 251

Cyanothece sp. (strain ATCC 51142) (taxid: 43989)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|B8HP79|TRPC_CYAP4 Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=trpC PE=3 SV=1

 Score =  269 bits (688), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/256 (55%), Positives = 186/256 (72%), Gaps = 8/256 (3%)

Query: 94  IKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNA 153
           ++IRRRP    P+  V   +F+++    TPRNILEEIVWHK+VEV Q+++R PL  L+  
Sbjct: 1   MQIRRRPN---PVVAVQELRFQVKAPDATPRNILEEIVWHKEVEVEQMRERAPLLELRKQ 57

Query: 154 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC 213
           +  APP RDF+ AL  A  +   PALIAEVKKASPS+G+LRE+FDPV IA++Y   GAAC
Sbjct: 58  VQTAPPPRDFVAALRQAQYQ---PALIAEVKKASPSKGVLREEFDPVAIAQAYATAGAAC 114

Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273
           LS+LTDEK+F+GSF  L  +R A V  PLLCKEFI+  +Q+Y AR++GADAVLLIAA+L 
Sbjct: 115 LSVLTDEKFFQGSFTYLNQIRQA-VHLPLLCKEFIIYPYQMYLARSQGADAVLLIAAILS 173

Query: 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL 333
           D D++Y  KI   LG+ AL+EVH   E+DRVL +EG+ L+GINNRNLE F VD   T  L
Sbjct: 174 DQDLQYFLKIATSLGMAALIEVHTLTELDRVLNLEGVSLVGINNRNLENFTVDLQTTCDL 233

Query: 334 LEGERGEIIRQKNIIV 349
           L  +R + + Q+NI+V
Sbjct: 234 L-SKRWDQLDQRNILV 248

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q3AL94|TRPC_SYNSC Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=trpC PE=3 SV=1

 Score =  265 bits (678), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/264 (51%), Positives = 182/264 (68%), Gaps = 8/264 (3%)

Query: 94  IKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNA 153
           ++IRRRPP   P   V   ++ + ++   PR+ILE+IVW KD E+   + + PL  LK  
Sbjct: 1   MEIRRRPPN--PKVRVAHLEYAVPHDDEEPRHILEKIVWEKDREIDAARDKVPLDNLKQQ 58

Query: 154 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC 213
           +   PP +DF+GAL AA  +   PA+IAEVKKASPS+G++REDFDPV IA++Y  GGA+C
Sbjct: 59  IAKLPPTKDFLGALQAAATK---PAVIAEVKKASPSKGVIREDFDPVAIAKAYASGGASC 115

Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273
           LS+LTD+ +F+G F+ L  VR A V  PLLCKEF++  +Q++ AR  GADAVLLIAA+L 
Sbjct: 116 LSVLTDKTFFQGGFDVLVEVRQA-VDLPLLCKEFVLSPYQLFQARAAGADAVLLIAAILS 174

Query: 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL 333
           D D+RY+ K    LGLT LVEVHD  EMDRVL I G  LIGINNR+L +FE D + T++L
Sbjct: 175 DQDLRYLNKAAAALGLTVLVEVHDATEMDRVLSIGGFPLIGINNRDLTSFETDLATTERL 234

Query: 334 LEGERGEIIRQKNIIV--SGPFTR 355
           L      + +Q  ++V  SG F+R
Sbjct: 235 LVDFNDRLKQQGVLLVSESGLFSR 258

Synechococcus sp. (strain CC9605) (taxid: 110662)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q10ZM7|TRPC_TRIEI Indole-3-glycerol phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=trpC PE=3 SV=1

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/257 (51%), Positives = 183/257 (71%), Gaps = 6/257 (2%)

Query: 94  IKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNA 153
           ++IRRRPP   P   +G  ++ +    + P+NILEEIVWHK+ EV  L+ + PL  L+  
Sbjct: 1   MQIRRRPPN--PAVEMGTLRYEVSVPESKPKNILEEIVWHKEKEVDYLRDKEPLVELRKK 58

Query: 154 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC 213
           ++  PP  DF+  L  +  +T L A+IAEVKKASPS+G++R+DF+PV IA+ Y++  A C
Sbjct: 59  INLMPPPLDFLTTL--STGKTQL-AVIAEVKKASPSKGVIRQDFEPVAIAKLYQENAATC 115

Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273
           +S+LTD K+F+GSFENL  +R   V  PLLCK+F++  +QIY+AR  GADAVLLIAA+L 
Sbjct: 116 ISVLTDRKFFQGSFENLANIRE-NVDLPLLCKDFLIYPYQIYFARLYGADAVLLIAAILS 174

Query: 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL 333
           D D++Y  KI   LG+TALVEVH  +E+DRVLGIEG++LIGINNRNLE F VD   T +L
Sbjct: 175 DQDLKYFIKIVNSLGMTALVEVHTLKELDRVLGIEGVKLIGINNRNLEDFSVDLQTTFQL 234

Query: 334 LEGERGEIIRQKNIIVS 350
           +E  + E+ +   ++VS
Sbjct: 235 MEARKKELEKLGILVVS 251

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|A9BBR3|TRPC_PROM4 Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=trpC PE=3 SV=1

 Score =  261 bits (668), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 134/257 (52%), Positives = 180/257 (70%), Gaps = 6/257 (2%)

Query: 94  IKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNA 153
           ++IRRRPP   P   V   ++ I +E   PRNILE+I+W KD EV   ++R PLS LK  
Sbjct: 1   MEIRRRPPN--PKVKVANLEYAIPHEDGEPRNILEKILWEKDREVKVSRERVPLSELKAQ 58

Query: 154 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC 213
           ++N P  +DF+GAL    Q +  PA+IAE+KKASPS+G++RE+FDP+EIA +Y+ GGA C
Sbjct: 59  INNLPQTKDFLGAL---RQSSTSPAVIAEIKKASPSKGVIRENFDPIEIALAYKLGGATC 115

Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273
           LS+LTD+ +F+G FE L  VR   V  PLLCKEFI+  +QIY AR  GADAVLLIAA+L 
Sbjct: 116 LSVLTDKSFFQGGFEVLVQVRKT-VDLPLLCKEFIIQPYQIYQARVAGADAVLLIAAILS 174

Query: 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL 333
           D D+ Y+ K+   LGLT LVEVHD  E+ RVL +EG  L+GINNR+L+TF  D   TK++
Sbjct: 175 DQDLLYLRKVAISLGLTILVEVHDSNELKRVLDLEGFPLVGINNRDLKTFNTDLRTTKEV 234

Query: 334 LEGERGEIIRQKNIIVS 350
           ++  +  I  Q+ ++VS
Sbjct: 235 VKEHKKRISEQEVLLVS 251

Prochlorococcus marinus (strain MIT 9211) (taxid: 93059)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|B0CEU2|TRPC_ACAM1 Indole-3-glycerol phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=trpC PE=3 SV=1

 Score =  260 bits (665), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/256 (52%), Positives = 183/256 (71%), Gaps = 7/256 (2%)

Query: 94  IKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNA 153
           ++IRRRPP+      V   Q++++   N PRNILE+IVW K+ EV Q++    L  L+  
Sbjct: 1   MQIRRRPPSVAV--NVQELQYQVKTPENEPRNILEKIVWFKETEVEQMRDSVSLLDLRKQ 58

Query: 154 LDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC 213
           + N  P   F+ AL     +   PALIAEVKKASPS+G+LRE+FDPV IA++YE  GA+C
Sbjct: 59  VANCEPPLSFLDALKHGKTQ---PALIAEVKKASPSKGVLRENFDPVAIAQAYEAAGASC 115

Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273
           LS+LTD ++F+GSF+ L+ +R+A V  PLLCKEF++  +QIY AR++GADAVLLIAA+L 
Sbjct: 116 LSVLTDAEFFQGSFDYLQQIRAA-VSLPLLCKEFVIYPYQIYLARSRGADAVLLIAAILS 174

Query: 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL 333
           D D+ Y  KI K LG+TALVEVH   E++RV+ I GIELIGINNR+LETF VD   T +L
Sbjct: 175 DQDLTYFLKIIKSLGMTALVEVHTLPELERVMDIPGIELIGINNRDLETFTVDLEVTCQL 234

Query: 334 LEGERGEIIRQKNIIV 349
           L  ++G  ++ ++I+V
Sbjct: 235 L-AQQGTSLQDQDILV 249

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
225447502	396	PREDICTED: indole-3-glycerol phosphate s	0.983	0.881	0.761	1e-156
296085050	363	unnamed protein product [Vitis vinifera]	0.898	0.878	0.798	1e-150
255582874	389	tryptophan biosynthesis protein, trpc, p	0.969	0.884	0.742	1e-149
356554619	392	PREDICTED: indole-3-glycerol phosphate s	0.977	0.885	0.745	1e-147
449453616	411	PREDICTED: indole-3-glycerol phosphate s	0.997	0.861	0.705	1e-146
449511794	411	PREDICTED: indole-3-glycerol phosphate s	0.997	0.861	0.702	1e-146
356501182	393	PREDICTED: indole-3-glycerol phosphate s	0.980	0.885	0.736	1e-145
357492951	391	Indole-3-glycerol phosphate synthase [Me	0.977	0.887	0.722	1e-145
388519367	391	unknown [Medicago truncatula]	0.977	0.887	0.722	1e-145
297791991	375	hypothetical protein ARALYDRAFT_494873 [	0.904	0.856	0.703	1e-136

>gi|225447502|ref|XP_002265275.1| PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/360 (76%), Positives = 309/360 (85%), Gaps = 11/360 (3%)

Query: 1   MEGLVSPKTTPRILFPTL---NRRPSKFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETK 57
           MEGL S + TPR+L PT+   N +P KFSI      + M+  +   +    +RAQ++E+K
Sbjct: 1   MEGLFSLRATPRVLVPTVSAPNHKP-KFSI----SGTRMEVQKSKKLSVACVRAQQSESK 55

Query: 58  DGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQ 117
           DGSAT+S + +  E ALK KEWEVG   +E+AA+QGI+IRRRPPTGPPLHYVGPF+FR+Q
Sbjct: 56  DGSATVSPLSDSQENALKIKEWEVGRFQDEIAATQGIRIRRRPPTGPPLHYVGPFEFRLQ 115

Query: 118 NEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLP 177
           NEGNTPRNILEEIVW+KD EV+QLK+R+PL MLK AL+NAPP RDFI AL A+N RTG P
Sbjct: 116 NEGNTPRNILEEIVWNKDKEVSQLKERKPLGMLKKALENAPPNRDFIAALRASNLRTGFP 175

Query: 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAG 237
            LIAEVKKASPSRGILREDFDPVEIAR+YEKGGAACLS+LTDEKYFKGSFENLE +R+AG
Sbjct: 176 GLIAEVKKASPSRGILREDFDPVEIARAYEKGGAACLSVLTDEKYFKGSFENLELIRNAG 235

Query: 238 VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHD 297
           VKCPLLCKEF+VDAWQIYYARTKGADA+LLIAAVLPDLDIRYMTKICK+LGL ALVEVHD
Sbjct: 236 VKCPLLCKEFVVDAWQIYYARTKGADAILLIAAVLPDLDIRYMTKICKMLGLAALVEVHD 295

Query: 298 EREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV---SGPFT 354
           EREMDRVLGIEGIELIGINNRNL TFEVD SNTKKLLEGERGEIIRQK+IIV   SG FT
Sbjct: 296 EREMDRVLGIEGIELIGINNRNLATFEVDISNTKKLLEGERGEIIRQKDIIVVGESGLFT 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085050|emb|CBI28465.3| unnamed protein product [Vitis vinifera]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/322 (79%), Positives = 287/322 (89%), Gaps = 3/322 (0%)

Query: 36  MDAHRRNGVGFTPIRAQKAETKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIK 95
           M+  +   +    +RAQ++E+KDGSAT+S + +  E ALK KEWEVG   +E+AA+QGI+
Sbjct: 1   MEVQKSKKLSVACVRAQQSESKDGSATVSPLSDSQENALKIKEWEVGRFQDEIAATQGIR 60

Query: 96  IRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALD 155
           IRRRPPTGPPLHYVGPF+FR+QNEGNTPRNILEEIVW+KD EV+QLK+R+PL MLK AL+
Sbjct: 61  IRRRPPTGPPLHYVGPFEFRLQNEGNTPRNILEEIVWNKDKEVSQLKERKPLGMLKKALE 120

Query: 156 NAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLS 215
           NAPP RDFI AL A+N RTG P LIAEVKKASPSRGILREDFDPVEIAR+YEKGGAACLS
Sbjct: 121 NAPPNRDFIAALRASNLRTGFPGLIAEVKKASPSRGILREDFDPVEIARAYEKGGAACLS 180

Query: 216 ILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275
           +LTDEKYFKGSFENLE +R+AGVKCPLLCKEF+VDAWQIYYARTKGADA+LLIAAVLPDL
Sbjct: 181 VLTDEKYFKGSFENLELIRNAGVKCPLLCKEFVVDAWQIYYARTKGADAILLIAAVLPDL 240

Query: 276 DIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE 335
           DIRYMTKICK+LGL ALVEVHDEREMDRVLGIEGIELIGINNRNL TFEVD SNTKKLLE
Sbjct: 241 DIRYMTKICKMLGLAALVEVHDEREMDRVLGIEGIELIGINNRNLATFEVDISNTKKLLE 300

Query: 336 GERGEIIRQKNIIV---SGPFT 354
           GERGEIIRQK+IIV   SG FT
Sbjct: 301 GERGEIIRQKDIIVVGESGLFT 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582874|ref|XP_002532209.1| tryptophan biosynthesis protein, trpc, putative [Ricinus communis] gi|223528105|gb|EEF30178.1| tryptophan biosynthesis protein, trpc, putative [Ricinus communis]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/357 (74%), Positives = 301/357 (84%), Gaps = 13/357 (3%)

Query: 1   MEGLVSPKTTPRILFPTLNRRPSKFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETKDGS 60
           MEGLVS + + R   P+L   P+ FSI  S     ++           IRAQ+ +TK+G 
Sbjct: 1   MEGLVSARVSLRTA-PSLYLNPN-FSIKPSTNLLTLNTR----FSVPSIRAQQPDTKEGL 54

Query: 61  ATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEG 120
           A +    E+    LK KEWEVGML NEVAASQGI+IRRRPPTGPPLHYVGPF+FRIQNEG
Sbjct: 55  AMV----EEESNVLKVKEWEVGMLQNEVAASQGIRIRRRPPTGPPLHYVGPFEFRIQNEG 110

Query: 121 NTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALI 180
           NTPRNILEEI+WHK  EV+QLK+RRPLS+LKN+LDNAPP RDFIGAL AAN R G P LI
Sbjct: 111 NTPRNILEEIIWHKHTEVSQLKERRPLSVLKNSLDNAPPTRDFIGALKAANLRIGFPGLI 170

Query: 181 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC 240
           AEVKKASPSRGILREDFDPVEIA++YEKGGAACLS+LTDEK+FKGSFENLEA+R++GVKC
Sbjct: 171 AEVKKASPSRGILREDFDPVEIAQAYEKGGAACLSVLTDEKFFKGSFENLEAIRNSGVKC 230

Query: 241 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDERE 300
           PLLCKEF++DAWQIYYARTKGADA+LLIAAVLPDLDI+YMTKICK+LGLTAL+EVHDERE
Sbjct: 231 PLLCKEFVIDAWQIYYARTKGADAILLIAAVLPDLDIKYMTKICKVLGLTALIEVHDERE 290

Query: 301 MDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV---SGPFT 354
           MDRVL IEG+ELIGINNRNLETFEVD SNT+KLLEGERG++I+QK IIV   SG FT
Sbjct: 291 MDRVLAIEGVELIGINNRNLETFEVDISNTRKLLEGERGQLIQQKGIIVVGESGLFT 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554619|ref|XP_003545642.1| PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Glycine max]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/357 (74%), Positives = 301/357 (84%), Gaps = 10/357 (2%)

Query: 1   MEGLVSPKTTPRILFPTLNRRPSKFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETKDGS 60
           MEGL S K  P    P L+ RP + SI+   P+ A    R + + F+ + AQ  E+ DGS
Sbjct: 1   MEGLASLKA-PFPATPFLSSRP-RTSIL---PSQASFRKRSSFLSFS-VHAQ-VESDDGS 53

Query: 61  ATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEG 120
           A +++  E     LK KEWEVGM  NEVAASQGI+IRRRPP+GPPLHYVGPFQFR+QNEG
Sbjct: 54  AVVATSGESVTEVLKIKEWEVGMFQNEVAASQGIRIRRRPPSGPPLHYVGPFQFRLQNEG 113

Query: 121 NTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALI 180
           NTPRNILEEIVW+KD EV+QLK+R+PL +LK AL+NAPPARDFIGAL AAN+RTGLP LI
Sbjct: 114 NTPRNILEEIVWNKDTEVSQLKERKPLGVLKKALENAPPARDFIGALKAANERTGLPGLI 173

Query: 181 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC 240
           AEVKKASPSRGILREDFDPVEIA++YEKGGAACLS+LTDEKYFKGSFENLEA+R AG+KC
Sbjct: 174 AEVKKASPSRGILREDFDPVEIAKAYEKGGAACLSVLTDEKYFKGSFENLEAIRKAGIKC 233

Query: 241 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDERE 300
           PLLCKEFI+DAWQ+YYARTKGADAVLLIAAVLPDLDI+YM KICKLLGLTALVEVHDERE
Sbjct: 234 PLLCKEFIIDAWQLYYARTKGADAVLLIAAVLPDLDIKYMIKICKLLGLTALVEVHDERE 293

Query: 301 MDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV---SGPFT 354
            DRVL IEGIELIGINNRNLETFE+D S TKKLLEGERG+II ++ II+   SG FT
Sbjct: 294 FDRVLAIEGIELIGINNRNLETFELDISITKKLLEGERGKIIHERGIIMVGESGLFT 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453616|ref|XP_004144552.1| PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Cucumis sativus]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/370 (70%), Positives = 301/370 (81%), Gaps = 16/370 (4%)

Query: 1   MEGLVSPKTTPRILFPTLNR--RPSKFSIVRSVPASAMDAHRRNGVG-----------FT 47
           MEGL S +T P + F  ++   R SKF   R     +MD+  RN +            FT
Sbjct: 1   MEGLASLRTIPNVPFQPISSSTRRSKFLSRRLNLGPSMDSSLRNSITPTSSSSSSSPMFT 60

Query: 48  PIRAQKAETKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLH 107
            IRAQ+ E++ GSA  S   E  E ALK KEWEVGM  +EVAA+QGI+IRRRPPTGPPLH
Sbjct: 61  AIRAQQIESEAGSAAASPGTESEENALKVKEWEVGMFQDEVAATQGIRIRRRPPTGPPLH 120

Query: 108 YVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGAL 167
           YVGPFQFR+QNEGNTPRNILEEIVW+KD EV+Q+K+RRPL  LK  L+ APPARDF+GAL
Sbjct: 121 YVGPFQFRLQNEGNTPRNILEEIVWYKDKEVSQMKERRPLFSLKKDLERAPPARDFLGAL 180

Query: 168 MAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF 227
            AA  RT LP LIAEVKKASPSRG+LREDFDPVEIA++YEKGGAACLS+LTDEK+F+GSF
Sbjct: 181 KAAYLRTNLPGLIAEVKKASPSRGVLREDFDPVEIAQAYEKGGAACLSVLTDEKFFQGSF 240

Query: 228 ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLL 287
           ENLE +R+AGVKCPLLCKEF+VDAWQIYYAR+KGADA+LLIAAVLPDLDI+YM KICK++
Sbjct: 241 ENLEKIRNAGVKCPLLCKEFVVDAWQIYYARSKGADAILLIAAVLPDLDIKYMVKICKMV 300

Query: 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNI 347
           GLT LVEVHDE+EMDR+L IEGIELIGINNRNLETFEVD SNTKKLLEGERG+ IR+KN+
Sbjct: 301 GLTPLVEVHDEKEMDRMLAIEGIELIGINNRNLETFEVDISNTKKLLEGERGQKIREKNV 360

Query: 348 IV---SGPFT 354
           I+   SG FT
Sbjct: 361 IIVGESGLFT 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511794|ref|XP_004164055.1| PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Cucumis sativus]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/370 (70%), Positives = 300/370 (81%), Gaps = 16/370 (4%)

Query: 1   MEGLVSPKTTPRILFPTLNR--RPSKFSIVRSVPASAMDAHRRNGVG-----------FT 47
           MEGL S +T P + F  ++   R SKF   R     +MD+  RN +            FT
Sbjct: 1   MEGLASLRTIPNVPFQPISSSTRRSKFLSRRLNLGPSMDSSLRNSITLTSSSSSSSPMFT 60

Query: 48  PIRAQKAETKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLH 107
            IRAQ+ E++ GSA  S   E  E ALK KEWEVGM  +EV A+QGI+IRRRPPTGPPLH
Sbjct: 61  AIRAQQIESEAGSAAASPGTESEENALKVKEWEVGMFQDEVEATQGIRIRRRPPTGPPLH 120

Query: 108 YVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGAL 167
           YVGPFQFR+QNEGNTPRNILEEIVW+KD EV+Q+K+RRPL  LK  L+ APPARDF+GAL
Sbjct: 121 YVGPFQFRLQNEGNTPRNILEEIVWYKDKEVSQMKERRPLFSLKKDLERAPPARDFLGAL 180

Query: 168 MAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF 227
            AA  RT LP LIAEVKKASPSRG+LREDFDPVEIA++YEKGGAACLS+LTDEK+F+GSF
Sbjct: 181 KAAYLRTNLPGLIAEVKKASPSRGVLREDFDPVEIAQAYEKGGAACLSVLTDEKFFQGSF 240

Query: 228 ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLL 287
           ENLE +R+AGVKCPLLCKEF+VDAWQIYYAR+KGADA+LLIAAVLPDLDI+YM KICK++
Sbjct: 241 ENLEKIRNAGVKCPLLCKEFVVDAWQIYYARSKGADAILLIAAVLPDLDIKYMVKICKMV 300

Query: 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNI 347
           GLT LVEVHDE+EMDR+L IEGIELIGINNRNLETFEVD SNTKKLLEGERG+ IR+KN+
Sbjct: 301 GLTPLVEVHDEKEMDRMLAIEGIELIGINNRNLETFEVDISNTKKLLEGERGQKIREKNV 360

Query: 348 IV---SGPFT 354
           I+   SG FT
Sbjct: 361 IIVGESGLFT 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501182|ref|XP_003519406.1| PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Glycine max]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/357 (73%), Positives = 297/357 (83%), Gaps = 9/357 (2%)

Query: 1   MEGLVSPKTTPRILFPTLNRRPSKFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETKDGS 60
           MEGL S     R+ F T     S+      +P+ A+  H+R+        AQ  E+ DGS
Sbjct: 1   MEGLASL----RVPFQTTQFHSSR-PRTSILPSQAIFFHKRSSFSSFSASAQ-VESNDGS 54

Query: 61  ATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEG 120
           AT+++  E    ALK KEWEVGM  NEVAASQGI+IRRRPP+GPPLHYVGPFQFR+QNEG
Sbjct: 55  ATVATPGESVTEALKTKEWEVGMFQNEVAASQGIRIRRRPPSGPPLHYVGPFQFRLQNEG 114

Query: 121 NTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALI 180
           NTPRNILEEIVW+KD EV+ LK+R+PL +LK AL+NAPPARDFIGAL AAN+RTGLP LI
Sbjct: 115 NTPRNILEEIVWNKDTEVSHLKERKPLGVLKKALENAPPARDFIGALKAANERTGLPGLI 174

Query: 181 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC 240
           AEVKKASPSRGILREDFDPVEIA++YEKGGAACLS+LTDEKYFKGSFENLEA+R AG+KC
Sbjct: 175 AEVKKASPSRGILREDFDPVEIAKAYEKGGAACLSVLTDEKYFKGSFENLEAIRMAGIKC 234

Query: 241 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDERE 300
           PLLCKEFI+DAWQ+YYARTKGADAVLLIAAVLPDLDI+YM KICKLLGLTALVEVHDERE
Sbjct: 235 PLLCKEFIIDAWQLYYARTKGADAVLLIAAVLPDLDIKYMIKICKLLGLTALVEVHDERE 294

Query: 301 MDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV---SGPFT 354
            DRVL IEGIELIGINNRNLETFE+D S TKKLLEGERG+IIR++ I +   SG FT
Sbjct: 295 FDRVLAIEGIELIGINNRNLETFELDISITKKLLEGERGKIIRERGITMVGESGLFT 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492951|ref|XP_003616764.1| Indole-3-glycerol phosphate synthase [Medicago truncatula] gi|355518099|gb|AES99722.1| Indole-3-glycerol phosphate synthase [Medicago truncatula]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 258/357 (72%), Positives = 297/357 (83%), Gaps = 10/357 (2%)

Query: 1   MEGLVSPKTTPRILFPTLNRRPSKFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETKDGS 60
           ME L+S K    + FP+ +  P       ++P + +  +R+N +    +RAQ  +  +GS
Sbjct: 1   MEPLISLKGHFHV-FPSFSSNPRT-----TIPPTQVITYRKNSIFTLSVRAQ-VDPNEGS 53

Query: 61  ATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEG 120
           ATI++  E    ALK KEWEVGM  NEVAA+QGI+IRRRPPTGPP HYVGPFQFR+QNEG
Sbjct: 54  ATIATSGESVVEALKVKEWEVGMFHNEVAATQGIRIRRRPPTGPPNHYVGPFQFRLQNEG 113

Query: 121 NTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALI 180
           NTPRNILEEIVW+KD EV QLK+R+PL  +  AL NAPP RDFIGAL AAN+RTGLP LI
Sbjct: 114 NTPRNILEEIVWNKDNEVAQLKERKPLITISKALGNAPPVRDFIGALRAANERTGLPGLI 173

Query: 181 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC 240
           AEVKKASPSRGILRE+FDPVEIA+SYEKGGAACLS+LTDEKYFKGSFENLE +R+AGVKC
Sbjct: 174 AEVKKASPSRGILRENFDPVEIAQSYEKGGAACLSVLTDEKYFKGSFENLELIRNAGVKC 233

Query: 241 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDERE 300
           PLLCKEFI+DAWQ+YYAR+KGADAVLLIAAVLPDLDI+YM KICKLLGLTALVEVHDE E
Sbjct: 234 PLLCKEFIIDAWQLYYARSKGADAVLLIAAVLPDLDIKYMVKICKLLGLTALVEVHDEME 293

Query: 301 MDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV---SGPFT 354
            DRVLGIEG+ELIGINNRNLETFE+D S TKKLLEGERG+IIR++NII+   SG FT
Sbjct: 294 FDRVLGIEGVELIGINNRNLETFELDISTTKKLLEGERGKIIRERNIIMVGESGLFT 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519367|gb|AFK47745.1| unknown [Medicago truncatula]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 258/357 (72%), Positives = 297/357 (83%), Gaps = 10/357 (2%)

Query: 1   MEGLVSPKTTPRILFPTLNRRPSKFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETKDGS 60
           ME L+S K    + FP+ +  P       ++P + +  +R+N +    +RAQ  +  +GS
Sbjct: 1   MEPLISLKGHFHV-FPSFSSTPRT-----TIPPTQVITYRKNSIFTLSVRAQ-VDPNEGS 53

Query: 61  ATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEG 120
           ATI++  E    ALK KEWEVGM  NEVAA+QGI+IRRRPPTGPP HYVGPFQFR+QNEG
Sbjct: 54  ATIATSGESVVEALKVKEWEVGMFHNEVAATQGIRIRRRPPTGPPNHYVGPFQFRLQNEG 113

Query: 121 NTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALI 180
           NTPRNILEEIVW+KD EV QLK+R+PL  +  AL NAPP RDFIGAL AAN+RTGLP LI
Sbjct: 114 NTPRNILEEIVWNKDNEVAQLKERKPLITISKALGNAPPVRDFIGALRAANERTGLPGLI 173

Query: 181 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC 240
           AEVKKASPSRGILRE+FDPVEIA+SYEKGGAACLS+LTDEKYFKGSFENLE +R+AGVKC
Sbjct: 174 AEVKKASPSRGILRENFDPVEIAQSYEKGGAACLSVLTDEKYFKGSFENLELIRNAGVKC 233

Query: 241 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDERE 300
           PLLCKEFI+DAWQ+YYAR+KGADAVLLIAAVLPDLDI+YM KICKLLGLTALVEVHDE E
Sbjct: 234 PLLCKEFIIDAWQLYYARSKGADAVLLIAAVLPDLDIKYMVKICKLLGLTALVEVHDEME 293

Query: 301 MDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV---SGPFT 354
            DRVLGIEG+ELIGINNRNLETFE+D S TKKLLEGERG+IIR++NII+   SG FT
Sbjct: 294 FDRVLGIEGVELIGINNRNLETFELDISTTKKLLEGERGKIIRERNIIMVGESGLFT 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791991|ref|XP_002863880.1| hypothetical protein ARALYDRAFT_494873 [Arabidopsis lyrata subsp. lyrata] gi|297309715|gb|EFH40139.1| hypothetical protein ARALYDRAFT_494873 [Arabidopsis lyrata subsp. lyrata]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/347 (70%), Positives = 282/347 (81%), Gaps = 26/347 (7%)

Query: 15  FPT--LNRRPSKFSIVRSV--PASAMDAHRRNGVGFTPIRAQKAETKDGSATISSVMEDA 70
           FP+  + RR S+F+I   +  P+S +           P+RAQK+   +GS  +S      
Sbjct: 7   FPSSAIQRRLSQFNIHDKLTRPSSCL-----------PLRAQKSGITEGSGKVSD----- 50

Query: 71  ETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEI 130
              LK  E EVGM  NEV  SQGI+IRRRPPTGPPLHYVGPF+FR+QNEGNTPRNILEEI
Sbjct: 51  ---LKISEQEVGMYQNEVVESQGIRIRRRPPTGPPLHYVGPFEFRLQNEGNTPRNILEEI 107

Query: 131 VWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSR 190
           VWHKD EV Q+K+R+PL  LK ALDN PPA+DFIGAL +A+QRTGLP LIAEVKKASPSR
Sbjct: 108 VWHKDKEVAQMKERKPLYTLKKALDNVPPAKDFIGALRSAHQRTGLPGLIAEVKKASPSR 167

Query: 191 GILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD 250
           GILREDF+PVEIA++YEKGGAACLS+LTD+KYFKGS+ENL+A+R AGVKCPLL KEFIV+
Sbjct: 168 GILREDFNPVEIAQAYEKGGAACLSVLTDDKYFKGSYENLQAIREAGVKCPLLLKEFIVE 227

Query: 251 AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGI 310
           AWQIYY R+KGADAVLLIA+VLPDLDI+YM KICK+L +  LVEVHDEREMDRVL IEG+
Sbjct: 228 AWQIYYGRSKGADAVLLIASVLPDLDIKYMIKICKILKMATLVEVHDEREMDRVLAIEGV 287

Query: 311 ELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV---SGPFT 354
           ELIGINNRNLETFEVD   TKKLLEGERGE+IRQK+I+V   SG FT
Sbjct: 288 ELIGINNRNLETFEVDLGITKKLLEGERGELIRQKDILVVGESGLFT 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2164768	379	AT5G48220 [Arabidopsis thalian	0.847	0.794	0.701	2.2e-112
TAIR|locus:2058294	402	AT2G04400 [Arabidopsis thalian	0.994	0.878	0.601	4e-106
TIGR_CMR|GSU_2380	266	GSU_2380 "Indole-3-glycerol ph	0.591	0.789	0.413	6.5e-35
TIGR_CMR|CPS_3525	480	CPS_3525 "indole-3-glycerol ph	0.492	0.364	0.433	9.8e-32
TIGR_CMR|DET_1484	259	DET_1484 "indole-3-glycerol ph	0.571	0.783	0.390	1.6e-31
TIGR_CMR|CHY_1584	264	CHY_1584 "indole-3-glycerol ph	0.492	0.662	0.438	2.6e-31
TIGR_CMR|SPO_2151	270	SPO_2151 "indole-3-glycerol ph	0.574	0.755	0.394	2.3e-30
UNIPROTKB|P00909	452	trpC "indole-3-glycerol phosph	0.481	0.378	0.438	1.3e-29
TIGR_CMR|CJE_0606	258	CJE_0606 "indole-3-glycerol ph	0.487	0.670	0.422	2.7e-29
UNIPROTKB|P0A632	272	trpC "Indole-3-glycerol phosph	0.605	0.790	0.369	5.6e-29

TAIR|locus:2164768 AT5G48220 [Arabidopsis thaliana (taxid:3702)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 219/312 (70%), Positives = 250/312 (80%)

Query:    46 FTPIRAQKAETKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPP 105
             + P+RAQK+   +GS        D+    K  E EVGM  NEV  SQGI+IRRRPPTGPP
Sbjct:    35 YAPLRAQKSGITEGS--------DSALEAKVSEQEVGMYQNEVVESQGIRIRRRPPTGPP 86

Query:   106 LHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIG 165
             LHYVGPF+FR+QNEGNTPRNILEEIVWHKD EV Q+K+R+PL  LK ALDN PPA+DFIG
Sbjct:    87 LHYVGPFEFRLQNEGNTPRNILEEIVWHKDKEVAQMKERKPLYSLKKALDNVPPAKDFIG 146

Query:   166 ALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKG 225
             AL +A+QRTGLP LIAEVKKASPSRGILREDF+PVEIA++YEKGGAACLS+LTD+KYFKG
Sbjct:   147 ALRSAHQRTGLPGLIAEVKKASPSRGILREDFNPVEIAQAYEKGGAACLSVLTDDKYFKG 206

Query:   226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICK 285
             S+ENL+A+  AGVKCPLL KEFIV+AWQIYY R+KGADAVLLIA+VLPDLDI+YM KICK
Sbjct:   207 SYENLQAIMEAGVKCPLLLKEFIVEAWQIYYGRSKGADAVLLIASVLPDLDIKYMIKICK 266

Query:   286 LLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQK 345
             +LG+  LVEVHDEREMDRV                 TFEVD   TKKLLEGERGE+IRQK
Sbjct:   267 ILGMATLVEVHDEREMDRVLAIEGVELIGINNRNLETFEVDLGITKKLLEGERGELIRQK 326

Query:   346 NIIV---SGPFT 354
             +I+V   SG FT
Sbjct:   327 DILVVGESGLFT 338

GO:0003824 "catalytic activity" evidence=IEA

GO:0004425 "indole-3-glycerol-phosphate synthase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006568 "tryptophan metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2058294 AT2G04400 [Arabidopsis thaliana (taxid:3702)]

 Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
 Identities = 217/361 (60%), Positives = 268/361 (74%)

Query:     1 MEGLVSPKTTP-RILFPTLNRRPSKFSIVRSVPASAMDA--HRRNGVGFTPIRAQKAETK 57
             MEGLV  +  P ++  P+L R  +  SI RS+   AMD   + R    F+ IRAQ+++ K
Sbjct:     1 MEGLVPVQRLPIKVASPSLYRCNNSVSIRRSISGFAMDRKINFRAPSQFS-IRAQQSDLK 59

Query:    58 DGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQ 117
             +  A  SS +ED    L+ KEWEV M   E+A SQGI+IRR+PP+  PL Y GPF+ R+ 
Sbjct:    60 ESLAVSSSSVEDKGNVLRIKEWEVEMYQEELAISQGIRIRRKPPSKAPLGYSGPFELRLH 119

Query:   118 N-EGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGL 176
             N + ++PRNILEEI W+KDVEV+++K+  PL +LK A+++APP RDF+GAL  A++RTG 
Sbjct:   120 NNDADSPRNILEEITWYKDVEVSRMKELNPLDVLKKAVEDAPPTRDFVGALRMAHKRTGF 179

Query:   177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA 236
             P LIAEVKKASPSRGIL+E+FDPVEIA++YEKGGAACLS+LTD+KYF+G FENLEA+RSA
Sbjct:   180 PGLIAEVKKASPSRGILKENFDPVEIAQAYEKGGAACLSVLTDQKYFQGGFENLEAIRSA 239

Query:   237 GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH 296
             GVKCPLLCKEF+VD WQIYYARTKGADAVLLIAAVL DL+I ++ KICK L L ALVEVH
Sbjct:   240 GVKCPLLCKEFVVDPWQIYYARTKGADAVLLIAAVLADLEITFLLKICKKLSLAALVEVH 299

Query:   297 DEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIV---SGPF 353
             DEREM RV                 TFEVD SNTKKLLEGE G  IR++++IV   SG F
Sbjct:   300 DEREMGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGEHGRQIRERDMIVVGESGLF 359

Query:   354 T 354
             T
Sbjct:   360 T 360

GO:0003824 "catalytic activity" evidence=IEA

GO:0004425 "indole-3-glycerol-phosphate synthase activity" evidence=IEA;IGI

GO:0006568 "tryptophan metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS;IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0000162 "tryptophan biosynthetic process" evidence=TAS

TIGR_CMR|GSU_2380 GSU_2380 "Indole-3-glycerol phosphate synthase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 89/215 (41%), Positives = 127/215 (59%)

Query:   121 NTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNAL-DNAPPARDFIGALMAANQRTGLPAL 179
             +TP +IL++IV HK  EV   +   PL+ +K  + D     R F  AL   +  +G  A+
Sbjct:     3 DTP-DILKKIVEHKRGEVAAARSAAPLAEVKARIADLEDQPRGFERALRDCHA-SGWTAV 60

Query:   180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK 239
             IAEVKK SPS+G++R DFDP+EIA +YE+ GAACLS+LTDE++F G+   L  +R   V+
Sbjct:    61 IAEVKKGSPSKGVIRPDFDPLEIAETYEQNGAACLSVLTDEQFFLGNLRYLALIREQ-VR 119

Query:   240 CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDER 299
              PLL K+F+ D +Q+Y AR  GADA+LLIAA+L    I  +    +   L  L+EVHDE+
Sbjct:   120 LPLLRKDFLFDPYQVYEARAAGADAILLIAAMLEPAQIEDLAGFAREQYLDVLLEVHDEQ 179

Query:   300 EMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLL 334
             E++                   TF  D   T++L+
Sbjct:   180 ELE-TALASSCTLIGINNRNLRTFVTDLGTTERLI 213

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004425 "indole-3-glycerol-phosphate synthase activity" evidence=ISS

TIGR_CMR|CPS_3525 CPS_3525 "indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 78/180 (43%), Positives = 112/180 (62%)

Query:   124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEV 183
             +NILE+IV  K +E+  LK ++PLS   + L   P  +D   AL     +      I E 
Sbjct:    11 KNILEQIVDDKRIEIAALKIKKPLSSFIDEL--VPTTKDMYAALTRTKDKP-YAGFILEC 67

Query:   184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
             KKASPS+G++R DFD   I + Y+K  AA +S+LTDEKYF+G+F+ L+ V  + VKCP+L
Sbjct:    68 KKASPSKGLIRPDFDVKAICQIYDKYAAA-ISVLTDEKYFQGNFDYLKIVTQS-VKCPVL 125

Query:   244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
              K+F VD++Q+Y AR  GADAVLL+ +VL D +   ++ + +   L  L E+  E E DR
Sbjct:   126 NKDFFVDSYQVYLARYYGADAVLLMLSVLSDEEYLELSAVAEQYNLAVLTEISTEAERDR 185

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004425 "indole-3-glycerol-phosphate synthase activity" evidence=ISS

GO:0004640 "phosphoribosylanthranilate isomerase activity" evidence=ISS

TIGR_CMR|DET_1484 DET_1484 "indole-3-glycerol phosphate synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 82/210 (39%), Positives = 124/210 (59%)

Query:   126 ILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKK 185
             ILE IV     ++ + K R PL+ L+  + + P    ++   MA   +     LIAEVKK
Sbjct:     2 ILERIVTDNLPDLERRKMRLPLAKLQELVLDIP----YLPIDMAMKLKGRQVRLIAEVKK 57

Query:   186 ASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV--KCPLL 243
             ASPS+GI+R DFDPV+IA  Y + GA+ +S+LT+E +F GS +NL+ +R +GV  K PLL
Sbjct:    58 ASPSKGIIRPDFDPVDIAGIYARNGASAISVLTEEHHFMGSLDNLKKIRESGVASKLPLL 117

Query:   244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
              K+FI D +Q+Y +R  GADA+LLI A+L    ++ +  +   LG+  LVEVH   E++ 
Sbjct:   118 RKDFIHDPYQVYESRLYGADAILLIVAMLSPERLQELLSLSHKLGMKCLVEVHTRSELE- 176

Query:   304 VXXXXXXXXXXXXXXXXXTFEVDNSNTKKL 333
             +                 TF++D + T++L
Sbjct:   177 IALESNARIIGLNNRDLHTFKIDLTVTERL 206

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004425 "indole-3-glycerol-phosphate synthase activity" evidence=ISS

TIGR_CMR|CHY_1584 CHY_1584 "indole-3-glycerol phosphate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 79/180 (43%), Positives = 115/180 (63%)

Query:   127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPAR---DFIGALMAANQRTGLPALIAEV 183
             LE+IV  +  +V Q K + P   ++   +     R       AL+  N + G   +IAE+
Sbjct:     3 LEKIVQVRREKVRQAKNKIPFWEMRKMAEEQVSHRLPLSLRQALLRENAK-GKVGVIAEI 61

Query:   184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
             KKASPS+G+LRE  DP E+A+ Y K GAA +S+LT+E YF GS E L+AVR+  V  P+L
Sbjct:    62 KKASPSKGVLREQLDPEEVAQVYAKSGAAAISVLTEEDYFLGSPEYLKAVRAV-VSLPIL 120

Query:   244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
              K+FI+D +QIY A+  GADAVLLI ++L  ++++ M KI + LG+ ALVE H   E+++
Sbjct:   121 RKDFILDPYQIYEAKVLGADAVLLITSLLASVELKEMIKITEGLGMEALVEAHSLEEVEK 180

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004425 "indole-3-glycerol-phosphate synthase activity" evidence=ISS

TIGR_CMR|SPO_2151 SPO_2151 "indole-3-glycerol phosphate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 82/208 (39%), Positives = 114/208 (54%)

Query:   126 ILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKK 185
             IL++I  +K  EV   K  +PL  ++     A P R F  AL+AA  R G   LIAE+KK
Sbjct:     5 ILDKIKAYKLEEVAADKAAKPLEAVEAEAREADPVRGFADALIAAT-RQGY-GLIAEIKK 62

Query:   186 ASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK 245
             ASPS+G++R DFDP  +AR+Y +GGA CLS+LTD   F+G+   L A R+A    P L K
Sbjct:    63 ASPSKGLIRPDFDPPALARAYAEGGATCLSVLTDTPSFQGAKSYLTAARAA-CDLPALRK 121

Query:   246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVX 305
             +F+ D +Q+  AR  GAD +L+I A + D     + +     G+  L+EVHD  E++R  
Sbjct:   122 DFMYDPYQVVEARALGADCILIIMASVDDAQAEELEQTAFDWGMDVLIEVHDAEELERAE 181

Query:   306 XXXXXXXXXXXXXXXXTFEVDNSNTKKL 333
                             TFE     T+KL
Sbjct:   182 RLKSPLIGINNRNLK-TFETTLDTTRKL 208

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004425 "indole-3-glycerol-phosphate synthase activity" evidence=ISS

UNIPROTKB|P00909 trpC "indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase" [Escherichia coli K-12 (taxid:83333)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 79/180 (43%), Positives = 108/180 (60%)

Query:   124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEV 183
             + +L +IV  K + V   KQ++PL+  +N +   P  R F  AL  A  RT   A I E 
Sbjct:     2 QTVLAKIVADKAIWVEARKQQQPLASFQNEVQ--PSTRHFYDALQGA--RT---AFILEC 54

Query:   184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
             KKASPS+G++R+DFDP  IA  Y K  A+ +S+LTDEKYF+GSF  L  V     + P+L
Sbjct:    55 KKASPSKGVIRDDFDPARIAAIY-KHYASAISVLTDEKYFQGSFNFLPIVSQIAPQ-PIL 112

Query:   244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
             CK+FI+D +QIY AR   ADA LL+ +VL D   R +  +   L +  L EV +E E +R
Sbjct:   113 CKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQER 172

GO:0004425 "indole-3-glycerol-phosphate synthase activity" evidence=IEA;IDA

GO:0004640 "phosphoribosylanthranilate isomerase activity" evidence=IEA;IDA

GO:0000162 "tryptophan biosynthetic process" evidence=IEA;IMP

TIGR_CMR|CJE_0606 CJE_0606 "indole-3-glycerol phosphate synthase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 76/180 (42%), Positives = 112/180 (62%)

Query:   126 ILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAP--PARDFIGALMAANQRTGLPALIAEV 183
             IL++I      ++ + K + P  ML  +L + P  P +D I AL    +      +IAEV
Sbjct:     2 ILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFP-KDVIKALKRVEKEV---KIIAEV 57

Query:   184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
             KKASPS+G++REDFDP+ IA +YEK  AA +S+LT+  +FKGS E L  +R    + PLL
Sbjct:    58 KKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLEYLSLIRRY-TQIPLL 116

Query:   244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
              K+FI D +QI  A   GAD VLLIA +L   +++ + +  + LGL ALVE+HD+ ++ +
Sbjct:   117 RKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHLGLEALVEIHDKEDLSK 176

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004425 "indole-3-glycerol-phosphate synthase activity" evidence=ISS

UNIPROTKB|P0A632 trpC "Indole-3-glycerol phosphate synthase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 82/222 (36%), Positives = 123/222 (55%)

Query:   122 TPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIA 181
             +P  +L+ I+     +V   +    LS +K A   APP  D    +MAA +  G+  +IA
Sbjct:     2 SPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLD----VMAALREPGI-GVIA 56

Query:   182 EVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241
             EVK+ASPS G L    DP ++A++Y+ GGA  +S++T+++ F+GS ++L+AVR A V  P
Sbjct:    57 EVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVR-ASVSIP 115

Query:   242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREM 301
             +L K+F+V  +QI+ AR  GAD +LLI A L    +  M    + LG+TALVEVH E+E 
Sbjct:   116 VLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEA 175

Query:   302 DRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIR 343
             DR                  T +VD     ++  G    +IR
Sbjct:   176 DRALKAGAKVIGVNARDLM-TLDVDRDCFARIAPGLPSSVIR 216

GO:0000162 "tryptophan biosynthetic process" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0004425 "indole-3-glycerol-phosphate synthase activity" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0046391 "5-phosphoribose 1-diphosphate metabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1WQE4	TRPC_CYAA5	4, ., 1, ., 1, ., 4, 8	0.5408	0.7070	0.8537	yes	no
Q0IC57	TRPC_SYNS3	4, ., 1, ., 1, ., 4, 8	0.5113	0.7211	0.8707	yes	no
Q3AL94	TRPC_SYNSC	4, ., 1, ., 1, ., 4, 8	0.5151	0.7211	0.8677	yes	no
Q5N575	TRPC_SYNP6	4, ., 1, ., 1, ., 4, 8	0.5349	0.6535	0.7864	yes	no
B7K0H0	TRPC_CYAP8	4, ., 1, ., 1, ., 4, 8	0.5766	0.6816	0.8259	yes	no
B0JTM2	TRPC_MICAN	4, ., 1, ., 1, ., 4, 8	0.5937	0.7014	0.8412	yes	no
Q10ZM7	TRPC_TRIEI	4, ., 1, ., 1, ., 4, 8	0.5136	0.7070	0.8451	yes	no
Q7TTU3	TRPC_SYNPX	4, ., 1, ., 1, ., 4, 8	0.5037	0.7211	0.8707	yes	no
Q7TV44	TRPC_PROMM	4, ., 1, ., 1, ., 4, 8	0.5037	0.7211	0.8504	yes	no
A9BBR3	TRPC_PROM4	4, ., 1, ., 1, ., 4, 8	0.5214	0.7070	0.8508	yes	no
B0CEU2	TRPC_ACAM1	4, ., 1, ., 1, ., 4, 8	0.5234	0.7014	0.8217	yes	no
A5GRL0	TRPC_SYNR3	4, ., 1, ., 1, ., 4, 8	0.5094	0.7183	0.8673	yes	no
B8HP79	TRPC_CYAP4	4, ., 1, ., 1, ., 4, 8	0.5585	0.6985	0.8211	yes	no
A2CB59	TRPC_PROM3	4, ., 1, ., 1, ., 4, 8	0.5075	0.7211	0.8504	yes	no
Q8KPR4	TRPC_SYNE7	4, ., 1, ., 1, ., 4, 8	0.5349	0.6535	0.7864	yes	no
Q7NHI0	TRPC_GLOVI	4, ., 1, ., 1, ., 4, 8	0.5330	0.6985	0.8406	yes	no
A5GMK4	TRPC_SYNPW	4, ., 1, ., 1, ., 4, 8	0.5151	0.7211	0.8707	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.1.1.48	0.946
3rd Layer	4.1.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029073001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (396 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023836001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (316 aa)	•		•	•		•	•		0.999
	GSVIVG00027369001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (458 aa)	•	•	•	•		•	•		0.999
	GSVIVG00006903001	SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (407 aa)	•	•	•	•		•	•		0.998
	GSVIVG00029306001	RecName- Full=N-(5'-phosphoribosyl)anthranilate isomerase; EC=5.3.1.24; (262 aa)	•		•			•	•		0.998
	GSVIVG00030640001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (141 aa)	•	•	•			•	•		0.989
	GSVIVG00016051001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (389 aa)	•		•	•		•	•		0.987
	GSVIVG00020704001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (430 aa)	•		•	•		•	•		0.986
	GSVIVG00038137001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (483 aa)	•	•				•	•		0.982
	GSVIVG00024135001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (517 aa)	•		•	•			•		0.980
	GSVIVG00030639001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (103 aa)	•		•			•	•		0.980

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
PLN02460	338	PLN02460, PLN02460, indole-3-glycerol-phosphate sy	0.0
PRK00278	260	PRK00278, trpC, indole-3-glycerol-phosphate syntha	1e-108
COG0134	254	COG0134, TrpC, Indole-3-glycerol phosphate synthas	4e-88
cd00331	217	cd00331, IGPS, Indole-3-glycerol phosphate synthas	7e-83
pfam00218	254	pfam00218, IGPS, Indole-3-glycerol phosphate synth	5e-80
PRK09427	454	PRK09427, PRK09427, bifunctional indole-3-glycerol	9e-70
PRK13957	247	PRK13957, PRK13957, indole-3-glycerol-phosphate sy	4e-41
PRK13802	695	PRK13802, PRK13802, bifunctional indole-3-glycerol	8e-37

>gnl|CDD|215254 PLN02460, PLN02460, indole-3-glycerol-phosphate synthase

 Score =  560 bits (1446), Expect = 0.0
 Identities = 242/303 (79%), Positives = 273/303 (90%), Gaps = 7/303 (2%)

Query: 55  ETKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQF 114
            +K GSA    + +D   AL+ KEWEVGM  NE+AASQGI+IRRRPPTGPPLHYVGPFQF
Sbjct: 1   ASKSGSA----LYDDMFNALEVKEWEVGMSQNEIAASQGIRIRRRPPTGPPLHYVGPFQF 56

Query: 115 RIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRT 174
           R+QNEGNTPRNILEEIVW+KDVEV Q+K+R+PL +LK AL NAPPARDF+GAL AA++RT
Sbjct: 57  RLQNEGNTPRNILEEIVWYKDVEVAQMKERKPLYLLKKALQNAPPARDFVGALRAAHKRT 116

Query: 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR 234
           G P LIAEVKKASPSRG+LRE+FDPVEIA++YEKGGAACLS+LTDEKYF+GSFENLEA+R
Sbjct: 117 GQPGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIR 176

Query: 235 SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE 294
           +AGVKCPLLCKEFIVDAWQIYYAR+KGADA+LLIAAVLPDLDI+YM KICK LG+ AL+E
Sbjct: 177 NAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIE 236

Query: 295 VHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV---SG 351
           VHDEREMDRVLGIEG+ELIGINNR+LETFEVD SNTKKLLEGERGE IR+K IIV   SG
Sbjct: 237 VHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESG 296

Query: 352 PFT 354
            FT
Sbjct: 297 LFT 299

Length = 338

>gnl|CDD|234710 PRK00278, trpC, indole-3-glycerol-phosphate synthase; Reviewed

 Score =  316 bits (813), Expect = e-108
 Identities = 124/235 (52%), Positives = 156/235 (66%), Gaps = 14/235 (5%)

Query: 123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAE 182
             +IL++IV +K  EV   K + PL+ LK     APP RDF  AL     R G PA+IAE
Sbjct: 1   MMDILDKIVAYKREEVAARKAQVPLAELKARAAAAPPPRDFAAAL-----RAGKPAVIAE 55

Query: 183 VKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL 242
           VKKASPS+G++REDFDPVEIA++YE GGAACLS+LTDE++F+GS E L A R+A V  P+
Sbjct: 56  VKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-VSLPV 114

Query: 243 LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
           L K+FI+D +QIY AR  GADA+LLI A L D  ++ +      LGL  LVEVHDE E++
Sbjct: 115 LRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELE 174

Query: 303 RVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV--SGPFTR 355
           R L   G  LIGINNRNL+TFEVD   T++L        I    ++V  SG FT 
Sbjct: 175 RAL-KLGAPLIGINNRNLKTFEVDLETTERLAPL-----IPSDRLVVSESGIFTP 223

Length = 260

>gnl|CDD|223212 COG0134, TrpC, Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

 Score =  265 bits (679), Expect = 4e-88
 Identities = 116/229 (50%), Positives = 154/229 (67%), Gaps = 10/229 (4%)

Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
           LE+I+  K  EV   K + PL+ L+  + +A   RDF  AL  A+ +   PA+IAEVKKA
Sbjct: 1   LEKILADKKEEVAARKAKLPLAELRAKIRSAD--RDFYAALKEASGK---PAVIAEVKKA 55

Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
           SPS+G++REDFDPVEIA++YE+GGAA +S+LTD KYF+GSFE+L AVR+A V  P+L K+
Sbjct: 56  SPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAA-VDLPVLRKD 114

Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
           FI+D +QIY AR  GADAVLLI A L D  +  +      LG+  LVEVH+E E++R L 
Sbjct: 115 FIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALK 174

Query: 307 IEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGPFTR 355
           + G ++IGINNR+L T EVD   T+KL      ++I    I  SG  T 
Sbjct: 175 L-GAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVIL---ISESGISTP 219

Length = 254

>gnl|CDD|238203 cd00331, IGPS, Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

 Score =  250 bits (641), Expect = 7e-83
 Identities = 99/188 (52%), Positives = 136/188 (72%), Gaps = 11/188 (5%)

Query: 163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKY 222
           F  AL    +R G   +IAEVK+ASPS+G++REDFDPVEIA++YEK GAA +S+LT+ KY
Sbjct: 1   FKAAL----KRPGGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKY 56

Query: 223 FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTK 282
           F+GS E+L AVR A V  P+L K+FI+D +QIY AR  GADAVLLI A L D  ++ + +
Sbjct: 57  FQGSLEDLRAVREA-VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYE 115

Query: 283 ICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEII 342
           + + LG+  LVEVHDE E++R L + G ++IGINNR+L+TFEVD + T++L       +I
Sbjct: 116 LARELGMEVLVEVHDEEELERALAL-GAKIIGINNRDLKTFEVDLNTTERLA-----PLI 169

Query: 343 RQKNIIVS 350
            +  I+VS
Sbjct: 170 PKDVILVS 177

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. Length = 217

>gnl|CDD|215798 pfam00218, IGPS, Indole-3-glycerol phosphate synthase

 Score =  244 bits (626), Expect = 5e-80
 Identities = 111/209 (53%), Positives = 142/209 (67%), Gaps = 5/209 (2%)

Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
           LE+IV  K  EV   K R PL+ L+     APP R F  AL  +  R   PALIAEVKKA
Sbjct: 1   LEKIVADKREEVAAAKARPPLADLQADARLAPPTRSFYDALRESRGR---PALIAEVKKA 57

Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
           SPS+G++REDFDP EIAR YE  GA+ +S+LT+ KYF+GS E L  VR A V  P+L K+
Sbjct: 58  SPSKGLIREDFDPAEIARVYEAAGASAISVLTEPKYFQGSLEYLREVREA-VSLPVLRKD 116

Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
           FI+D +QIY AR  GAD VLLI AVL D  +  + +  + LG+  LVEVH+E E++R L 
Sbjct: 117 FIIDEYQIYEARAYGADTVLLIVAVLSDELLEELYEYARSLGMEPLVEVHNEEELERALA 176

Query: 307 IEGIELIGINNRNLETFEVDNSNTKKLLE 335
           + G +LIG+NNRNL+TFEVD + T++L  
Sbjct: 177 L-GAKLIGVNNRNLKTFEVDLNTTRRLAP 204

Length = 254

>gnl|CDD|236509 PRK09427, PRK09427, bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

 Score =  224 bits (574), Expect = 9e-70
 Identities = 93/209 (44%), Positives = 132/209 (63%), Gaps = 10/209 (4%)

Query: 125 NILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVK 184
            +L +IV  K + V   KQ++PL+  +N +   P  R F  AL          A I E K
Sbjct: 5   TVLAKIVADKAIWVAARKQQQPLASFQNEI--QPSDRSFYDALKGPK-----TAFILECK 57

Query: 185 KASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC 244
           KASPS+G++R+DFDP EIAR Y K  A+ +S+LTDEKYF+GSF+ L  VR+  V  P+LC
Sbjct: 58  KASPSKGLIRDDFDPAEIARVY-KHYASAISVLTDEKYFQGSFDFLPIVRAI-VTQPILC 115

Query: 245 KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRV 304
           K+FI+D +QIY AR  GADA+LL+ +VL D   R +  +   L +  L EV +E E++R 
Sbjct: 116 KDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERA 175

Query: 305 LGIEGIELIGINNRNLETFEVDNSNTKKL 333
           + + G ++IGINNRNL    +D + T++L
Sbjct: 176 IAL-GAKVIGINNRNLRDLSIDLNRTREL 203

Length = 454

>gnl|CDD|140013 PRK13957, PRK13957, indole-3-glycerol-phosphate synthase; Provisional

 Score =  144 bits (364), Expect = 4e-41
 Identities = 82/203 (40%), Positives = 119/203 (58%), Gaps = 16/203 (7%)

Query: 123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAE 182
              +L EI+  K  E+ ++ +  PL       D   P RD        + ++   ++IAE
Sbjct: 1   MHRVLREIIETKQNEIEKISRWDPLP------DRGLPLRD--------SLKSRSFSIIAE 46

Query: 183 VKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL 242
            K+ SPS G LR D+ PV+IA++YE  GA+ +S+LTD+ YF GS E+L++V S+ +K P+
Sbjct: 47  CKRKSPSAGELRADYHPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSV-SSELKIPV 105

Query: 243 LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
           L K+FI+D  QI  AR  GA A+LLI  +L    I+   K    LG+  LVEVH E E  
Sbjct: 106 LRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAK 165

Query: 303 RVLGIEGIELIGINNRNLETFEV 325
             L   G E+IGIN R+L+TF++
Sbjct: 166 LALDC-GAEIIGINTRDLDTFQI 187

Length = 247

>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

 Score =  140 bits (354), Expect = 8e-37
 Identities = 84/220 (38%), Positives = 133/220 (60%), Gaps = 8/220 (3%)

Query: 125 NILEEIVWHKDVEVTQLKQRR-PLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEV 183
           ++L+E+V    +E  + ++    L  +K A   AP   D    L  A+   G+P +IAE+
Sbjct: 2   SVLDELV-AGALEDQRTRELTVSLEEVKKAAAAAPAPIDATRWLKRAD---GIP-VIAEI 56

Query: 184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
           K+ASPS+G L +  DP  +AR YE+GGA+ +S+LT+ + F GS ++ + VR+A V  P+L
Sbjct: 57  KRASPSKGHLSDIPDPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAA-VHIPVL 115

Query: 244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
            K+FIV  +QI+ AR  GAD VLLI A L D  ++++  +   LG+T LVE H   E++R
Sbjct: 116 RKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIER 175

Query: 304 VLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIR 343
            +   G ++IGIN RNL+  +VD +   +L      ++I+
Sbjct: 176 AIA-AGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIK 214

Length = 695

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
PLN02460	338	indole-3-glycerol-phosphate synthase	100.0
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	100.0
KOG4201	289	consensus Anthranilate synthase component II [Amin	100.0
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	100.0
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	100.0
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	100.0
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	100.0
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	100.0
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	100.0
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	99.69
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	99.67
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	99.24
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	99.22
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.98
PRK04302	223	triosephosphate isomerase; Provisional	98.69
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	98.65
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	98.24
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	98.18
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	98.17
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	98.15
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	97.94
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	97.77
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	97.33
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.25
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	97.21
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	97.09
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	96.9
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	96.82
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.81
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.77
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.72
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	96.59
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	96.54
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.49
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	96.46
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	96.43
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	96.36
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	96.29
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	96.26
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.24
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	96.19
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	96.18
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	96.13
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	96.1
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	95.92
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	95.88
TIGR03569	329	NeuB_NnaB N-acetylneuraminate synthase. This famil	95.66
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	95.58
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	95.56
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	95.55
TIGR03586	327	PseI pseudaminic acid synthase.	95.52
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	95.51
PLN02535	364	glycolate oxidase	95.5
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	95.49
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	95.38
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	95.2
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	95.16
PLN02274	505	inosine-5'-monophosphate dehydrogenase	95.14
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	95.13
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	94.99
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	94.88
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	94.84
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	94.82
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	94.58
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	94.57
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	94.53
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	94.48
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	94.46
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	94.4
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	94.35
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	94.33
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.32
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	94.3
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	94.26
PLN02334	229	ribulose-phosphate 3-epimerase	94.22
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	94.17
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	94.16
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	94.12
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	94.1
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	94.1
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	94.08
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	94.04
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	94.0
PRK00208	250	thiG thiazole synthase; Reviewed	93.96
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	93.87
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	93.84
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	93.83
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	93.74
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	93.72
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	93.7
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	93.63
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	93.61
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	93.59
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	93.53
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	93.49
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	93.42
PLN02591	250	tryptophan synthase	93.39
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	93.27
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	93.19
PLN02979	366	glycolate oxidase	93.19
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	93.15
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	93.13
PRK06852	304	aldolase; Validated	92.98
PF03102	241	NeuB: NeuB family; InterPro: IPR013132 NeuB is the	92.8
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	92.76
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	92.69
PRK09250	348	fructose-bisphosphate aldolase; Provisional	92.66
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	92.55
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	92.53
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	92.52
PRK14024	241	phosphoribosyl isomerase A; Provisional	92.44
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	92.41
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	92.37
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	92.37
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	92.35
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	92.32
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	92.31
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	92.26
PLN02274	505	inosine-5'-monophosphate dehydrogenase	92.21
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	92.13
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	91.88
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	91.86
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	91.85
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	91.81
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	91.78
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	91.61
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	91.5
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	91.4
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	91.37
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	91.35
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	91.03
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	91.02
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	90.98
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	90.97
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	90.86
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	90.7
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	90.68
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	90.63
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	90.52
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	90.43
TIGR03234	254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	90.3
cd08562	229	GDPD_EcUgpQ_like Glycerophosphodiester phosphodies	89.99
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	89.97
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	89.95
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	89.81
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	89.71
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	89.69
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	89.67
PRK14024	241	phosphoribosyl isomerase A; Provisional	89.66
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	89.53
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	89.21
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	89.17
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	89.12
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	89.01
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	88.92
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	88.91
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	88.62
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	88.57
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	88.56
PRK13523	337	NADPH dehydrogenase NamA; Provisional	88.55
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	88.53
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	88.39
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	88.36
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	88.29
PRK07226	267	fructose-bisphosphate aldolase; Provisional	88.04
cd08564	265	GDPD_GsGDE_like Glycerophosphodiester phosphodiest	88.03
PRK09856	275	fructoselysine 3-epimerase; Provisional	87.92
PLN02617	538	imidazole glycerol phosphate synthase hisHF	87.91
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	87.68
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	87.63
PRK13209	283	L-xylulose 5-phosphate 3-epimerase; Reviewed	87.6
cd08574	252	GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste	87.59
PRK12677	384	xylose isomerase; Provisional	87.5
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	87.47
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	87.46
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	87.44
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	87.26
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	87.26
cd08563	230	GDPD_TtGDE_like Glycerophosphodiester phosphodiest	87.1
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	87.1
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	87.07
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	87.04
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	86.91
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	86.87
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	86.57
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	86.42
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	86.29
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	86.19
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	86.17
cd08579	220	GDPD_memb_like Glycerophosphodiester phosphodieste	86.07
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	85.95
COG2876	286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	85.9
PRK04165	450	acetyl-CoA decarbonylase/synthase complex subunit	85.89
COG1891	235	Uncharacterized protein conserved in archaea [Func	85.88
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	85.86
cd08556	189	GDPD Glycerophosphodiester phosphodiesterase domai	85.6
PRK15452	443	putative protease; Provisional	85.58
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	85.4
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	85.3
PRK05198	264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	85.26
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	84.93
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	84.87
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	84.81
PLN02535	364	glycolate oxidase	84.75
TIGR01362	258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	84.5
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	84.47
smart00052	241	EAL Putative diguanylate phosphodiesterase. Putati	84.45
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	84.36
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	84.22
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	84.02
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	83.86
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	83.65
PLN02591	250	tryptophan synthase	83.6
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	83.58
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	83.43
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	83.24
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	83.06
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	83.06
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	83.0
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	82.88
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	82.8
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	82.72
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	82.37
cd08582	233	GDPD_like_2 Glycerophosphodiester phosphodiesteras	82.36
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	82.35
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	82.21
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	82.11
PRK13340	406	alanine racemase; Reviewed	82.11
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	82.03
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	82.02
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	81.94
PLN02826	409	dihydroorotate dehydrogenase	81.93
PRK06096	284	molybdenum transport protein ModD; Provisional	81.92
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	81.84
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	81.81
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	81.75
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	81.65
PRK07695	201	transcriptional regulator TenI; Provisional	81.62
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	81.58
PRK04452	319	acetyl-CoA decarbonylase/synthase complex subunit	81.43
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	81.16
TIGR01334	277	modD putative molybdenum utilization protein ModD.	81.04
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	80.42
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	80.42
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	80.41
PRK06096	284	molybdenum transport protein ModD; Provisional	80.33
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	80.33
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	80.22
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	80.21
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	80.2
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	80.02

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=100.00  E-value=1.5e-94  Score=704.89  Aligned_cols=293  Identities=82%  Similarity=1.285  Sum_probs=274.2

Q ss_pred             CCCcceeeccchhhhhHhhhhHhhhcchhhhhhhcCCcEEEecCCCCCCCceecceeeeecCCCCCcccHHHHHHHHHHH
Q 018446           57 KDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDV  136 (355)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irrr~~~~~~~~~~~~~~~~~~~~~~~p~~iLe~Iv~~K~~  136 (355)
                      +++++.+    +++.|++++++||+||++|+++++|||+|||||||+++.+.+++++|+++++.++|+|||++|+|+|+.
T Consensus         3 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~irr~~~~~~~~~~~~~~~~~~~~~~~~~~~iLe~Iv~~k~~   78 (338)
T PLN02460          3 KSGSALY----DDMFNALEVKEWEVGMSQNEIAASQGIRIRRRPPTGPPLHYVGPFQFRLQNEGNTPRNILEEIVWYKDV   78 (338)
T ss_pred             ccchhhh----hhhcchhHHHHhhccccchhccccCCceEecCCCCCcccccccccccccccccccHhHHHHHHHHHHHH
Confidence            4455554    788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE
Q 018446          137 EVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI  216 (355)
Q Consensus       137 EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV  216 (355)
                      ||++++.+.|+.+|++.+...|++++|.++|++.....++++|||||||+|||+|+|+++|||+++|+.|+++||+||||
T Consensus        79 eV~~~k~~~~l~~l~~~~~~~~~~r~f~~aL~~~~~~~g~~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aISV  158 (338)
T PLN02460         79 EVAQMKERKPLYLLKKALQNAPPARDFVGALRAAHKRTGQPGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSV  158 (338)
T ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCcCHHHHHHhhccccCCcceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEEE
Confidence            99999999999999999888889999999998632112458999999999999999999999999999999999999999


Q ss_pred             eccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC
Q 018446          217 LTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH  296 (355)
Q Consensus       217 LTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH  296 (355)
                      |||++||+||++||..||++++++||||||||||||||||||.+||||||||+++|++++|++|+++|++|||++|||||
T Consensus       159 LTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH  238 (338)
T PLN02460        159 LTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVH  238 (338)
T ss_pred             ecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence            99999999999999999985589999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccccccccCceEEeccc
Q 018446          297 DEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGPF  353 (355)
Q Consensus       297 ~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~~~l~~~~i~~V~~~  353 (355)
                      |++||++|+.+.|++|||||||||+||+||+++|.+|++..++.++++.++++|+|-
T Consensus       239 ~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsES  295 (338)
T PLN02460        239 DEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGES  295 (338)
T ss_pred             CHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECC
Confidence            999999999965899999999999999999999999999767778876788899874

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.4e-73  Score=535.49  Aligned_cols=207  Identities=54%  Similarity=0.827  Sum_probs=198.5

Q ss_pred             HHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHH
Q 018446          127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY  206 (355)
Q Consensus       127 Le~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Y  206 (355)
                      |++|+++|+.||++++...|+.+++......+  ++|.+||+..   .++++|||||||+|||+|.|+.+|||+++|+.|
T Consensus         1 L~~I~~~k~~ev~~~~~~~~l~~~~~~~~~~~--r~f~~AL~~~---~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Y   75 (254)
T COG0134           1 LEKILADKKEEVAARKAKLPLAELRAKIRSAD--RDFYAALKEA---SGKPAVIAEVKKASPSKGLIREDFDPVEIAKAY   75 (254)
T ss_pred             ChHHHHHHHHHHHhhhcccchHHHhhhhhhcc--ccHHHHHHhc---CCCceEEEEeecCCCCCCcccccCCHHHHHHHH
Confidence            68999999999999999999999999887665  9999999986   267899999999999999999999999999999


Q ss_pred             HHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHH
Q 018446          207 EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL  286 (355)
Q Consensus       207 e~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~  286 (355)
                      +++||+|||||||++||+||++||+.+|++ +++|||||||||||||||+||.+||||||||+++|++++|++|+++|++
T Consensus        76 e~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~-v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~  154 (254)
T COG0134          76 EEGGAAAISVLTDPKYFQGSFEDLRAVRAA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHE  154 (254)
T ss_pred             HHhCCeEEEEecCccccCCCHHHHHHHHHh-cCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999996 9999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcccccc
Q 018446          287 LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGE  340 (355)
Q Consensus       287 LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~~  340 (355)
                      |||++||||||++||++|+++ |++|||||||||+||+||+++|.+|++.+|.+
T Consensus       155 LGm~~LVEVh~~eEl~rAl~~-ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~  207 (254)
T COG0134         155 LGMEVLVEVHNEEELERALKL-GAKIIGINNRDLTTLEVDLETTEKLAPLIPKD  207 (254)
T ss_pred             cCCeeEEEECCHHHHHHHHhC-CCCEEEEeCCCcchheecHHHHHHHHhhCCCC
Confidence            999999999999999999997 99999999999999999999999998876654

>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-73  Score=529.09  Aligned_cols=233  Identities=56%  Similarity=0.888  Sum_probs=219.9

Q ss_pred             CCceecceeeeecCCCCCcccHHHHHHHHHHHHHHHHhccCC---HHHHHHhhhc--CCCCccHHHHHHhhhhcCCCceE
Q 018446          105 PLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRP---LSMLKNALDN--APPARDFIGALMAANQRTGLPAL  179 (355)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~p~~iLe~Iv~~K~~EV~~~k~~~p---l~~L~~~l~~--~pp~rdF~~aL~~~~~~~g~~aV  179 (355)
                      |..++|+.++++.+    |++|||+|.|+|..+|+++++ .|   +..|++.+..  +||.+||+.+|+.++   .+|++
T Consensus         2 ~~n~~sp~e~rl~n----p~sILe~I~~~r~idvae~k~-~Pg~t~~dLq~~ld~~~aPP~~dF~~~Lr~sh---k~p~l   73 (289)
T KOG4201|consen    2 PENYSSPSETRLRN----PRSILEEIYARRDIDVAEMKE-KPGFTLQDLQKALDLGLAPPLQDFYGALRSSH---KRPGL   73 (289)
T ss_pred             CCCCCCchhhhccC----HHHHHHHHHHHhhhhHHHhhc-CCCCcHHHHHHHHhccCCCchHHHHHHHHHhc---ccchH
Confidence            56788999998877    899999999999999999988 67   9999999887  899999999999986   46899


Q ss_pred             EeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHH-hcCCCCC---eeccccccCHHHHH
Q 018446          180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR-SAGVKCP---LLCKEFIVDAWQIY  255 (355)
Q Consensus       180 IAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR-~a~v~lP---VLrKDFIIdpyQI~  255 (355)
                      ||||||||||+|+|+.+++|+++|++|+++||+|||||||++||+||++||..+| .+++.+|   +||||||+||||||
T Consensus        74 iAEVKrASPSkG~ik~d~~~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~  153 (289)
T KOG4201|consen   74 IAEVKRASPSKGIIKLDANAAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIY  153 (289)
T ss_pred             HHHHhhcCCCCCccccccCHHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 4568899   99999999999999


Q ss_pred             HHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhc
Q 018446          256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE  335 (355)
Q Consensus       256 eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~  335 (355)
                      +||..|||+||||+++|++.+|++|+++|+.|||++|||||+++||+||+.+ |+++||||||||+||+||+++|.+|++
T Consensus       154 ~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei-GakvvGvNNRnL~sFeVDlstTskL~E  232 (289)
T KOG4201|consen  154 EARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI-GAKVVGVNNRNLHSFEVDLSTTSKLLE  232 (289)
T ss_pred             HHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh-CcEEEeecCCccceeeechhhHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999 999999999999999999999999998


Q ss_pred             cccccccccCceEEecc
Q 018446          336 GERGEIIRQKNIIVSGP  352 (355)
Q Consensus       336 ~~~~~~l~~~~i~~V~~  352 (355)
                      .+     | +++++||+
T Consensus       233 ~i-----~-kDvilva~  243 (289)
T KOG4201|consen  233 GI-----P-KDVILVAL  243 (289)
T ss_pred             hC-----c-cceEEEec
Confidence            74     4 45577776

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=100.00  E-value=2.8e-70  Score=517.23  Aligned_cols=207  Identities=53%  Similarity=0.816  Sum_probs=187.0

Q ss_pred             HHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHH
Q 018446          127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY  206 (355)
Q Consensus       127 Le~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Y  206 (355)
                      |++|+|+|++||++++++.|+++|++.....+++++|.++|++.   .++++|||||||+|||+|.|++++||.++|+.|
T Consensus         1 L~~Iv~~k~~ev~~~k~~~~~~~l~~~~~~~~~~~~f~~aL~~~---~~~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y   77 (254)
T PF00218_consen    1 LDEIVEHKREEVEERKKRVPLEELKKRIEAAPPPRSFKEALRQN---EGRISVIAEIKRASPSKGDIREDFDPAEIAKAY   77 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHCSHHHHHHHHHHCSS-TTHHHHHHHSH---TSS-EEEEEE-SEETTTEESBSS-SHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHhcC---CCCCeEEEEeecCCCCCCccCccCCHHHHHHHH
Confidence            79999999999999999999999999998889999999999885   267899999999999999999999999999999


Q ss_pred             HHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHH
Q 018446          207 EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL  286 (355)
Q Consensus       207 e~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~  286 (355)
                      +++||+|||||||++||+||++||..||++ +++|||||||||||||||+||.+||||||||+++|++++|++|+++|++
T Consensus        78 ~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~-~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~  156 (254)
T PF00218_consen   78 EEAGAAAISVLTEPKFFGGSLEDLRAVRKA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHS  156 (254)
T ss_dssp             HHTT-SEEEEE--SCCCHHHHHHHHHHHHH-SSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHH
T ss_pred             HhcCCCEEEEECCCCCCCCCHHHHHHHHHH-hCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999997 9999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcccc
Q 018446          287 LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGER  338 (355)
Q Consensus       287 LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~  338 (355)
                      |||++||||||++|+++|+.+ |++|||||||||+||++|+++|.+|++.+|
T Consensus       157 lGle~lVEVh~~~El~~al~~-~a~iiGINnRdL~tf~vd~~~~~~l~~~ip  207 (254)
T PF00218_consen  157 LGLEALVEVHNEEELERALEA-GADIIGINNRDLKTFEVDLNRTEELAPLIP  207 (254)
T ss_dssp             TT-EEEEEESSHHHHHHHHHT-T-SEEEEESBCTTTCCBHTHHHHHHHCHSH
T ss_pred             cCCCeEEEECCHHHHHHHHHc-CCCEEEEeCccccCcccChHHHHHHHhhCc
Confidence            999999999999999999997 999999999999999999999999987655

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=100.00  E-value=2.5e-65  Score=482.17  Aligned_cols=200  Identities=40%  Similarity=0.598  Sum_probs=188.3

Q ss_pred             ccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHH
Q 018446          124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA  203 (355)
Q Consensus       124 ~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA  203 (355)
                      .+||++|+++|++||++++...|+..+         +++|..+|.+     ++++|||||||+|||+|.|++++||+++|
T Consensus         2 ~~iL~~I~~~k~~~v~~~~~~~~~~~~---------~~~~~~~l~~-----~~~~vIaEiKr~SPs~G~i~~~~d~~~~A   67 (247)
T PRK13957          2 HRVLREIIETKQNEIEKISRWDPLPDR---------GLPLRDSLKS-----RSFSIIAECKRKSPSAGELRADYHPVQIA   67 (247)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCChhhh---------hhhHHHHHhC-----CCCeEEEEEecCCCCCCCcCCCCCHHHHH
Confidence            379999999999999988888887753         3468888864     34899999999999999999999999999


Q ss_pred             HHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHH
Q 018446          204 RSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKI  283 (355)
Q Consensus       204 ~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~  283 (355)
                      +.|+++||+|||||||++||+||++||..+|++ +++||||||||+|||||+||+.+||||||||+++|++++|++|+++
T Consensus        68 ~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~-v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~  146 (247)
T PRK13957         68 KTYETLGASAISVLTDQSYFGGSLEDLKSVSSE-LKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKH  146 (247)
T ss_pred             HHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHh-cCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHH
Confidence            999999999999999999999999999999996 8999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccc
Q 018446          284 CKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERG  339 (355)
Q Consensus       284 A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~  339 (355)
                      |++|||++||||||++|+++|+++ |+++||||||||+||++|+++|++|++.+|.
T Consensus       147 a~~lGle~LVEVh~~~El~~a~~~-ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~  201 (247)
T PRK13957        147 ASSLGMDVLVEVHTEDEAKLALDC-GAEIIGINTRDLDTFQIHQNLVEEVAAFLPP  201 (247)
T ss_pred             HHHcCCceEEEECCHHHHHHHHhC-CCCEEEEeCCCCccceECHHHHHHHHhhCCC
Confidence            999999999999999999999997 9999999999999999999999999887653

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=100.00  E-value=5.5e-65  Score=513.82  Aligned_cols=206  Identities=45%  Similarity=0.739  Sum_probs=195.2

Q ss_pred             ccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHH
Q 018446          124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA  203 (355)
Q Consensus       124 ~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA  203 (355)
                      .+||++|+++|++||++++...|+.++++...  +++++|..+|++.     +++|||||||+|||+|.|++++||+++|
T Consensus         4 ~~iL~~Ii~~k~~ev~~~~~~~~~~~~~~~~~--~~~~~~~~al~~~-----~~~vIaEiKraSPs~G~i~~~~d~~~~a   76 (454)
T PRK09427          4 PTVLAKIVADKAIWVAARKQQQPLASFQNEIQ--PSDRSFYDALKGP-----KTAFILECKKASPSKGLIRDDFDPAEIA   76 (454)
T ss_pred             chHHHHHHHHHHHHHHHHhhcCCHHHHHhhcC--cCCCCHHHHHhcC-----CCceEEEeecCCCCCCccCCCCCHHHHH
Confidence            47999999999999999999999999988653  5679999999752     4689999999999999999999999999


Q ss_pred             HHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHH
Q 018446          204 RSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKI  283 (355)
Q Consensus       204 ~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~  283 (355)
                      +.| ++||+|||||||++||+||++||..+|++ +++||||||||||+|||+|||.+||||||||+++|++++|.+|+++
T Consensus        77 ~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~-v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~  154 (454)
T PRK09427         77 RVY-KHYASAISVLTDEKYFQGSFDFLPIVRAI-VTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAV  154 (454)
T ss_pred             HHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHh-CCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHH
Confidence            999 78899999999999999999999999996 9999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccc
Q 018446          284 CKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERG  339 (355)
Q Consensus       284 A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~  339 (355)
                      |++|||++||||||++|+++|+++ |+++||||||||+||++|+++|++|++.+|.
T Consensus       155 a~~lGl~~lvEvh~~~El~~al~~-~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~  209 (454)
T PRK09427        155 AHSLNMGVLTEVSNEEELERAIAL-GAKVIGINNRNLRDLSIDLNRTRELAPLIPA  209 (454)
T ss_pred             HHHcCCcEEEEECCHHHHHHHHhC-CCCEEEEeCCCCccceECHHHHHHHHhhCCC
Confidence            999999999999999999999997 9999999999999999999999999987653

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=3.9e-64  Score=528.24  Aligned_cols=217  Identities=37%  Similarity=0.569  Sum_probs=204.2

Q ss_pred             ccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHH
Q 018446          124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA  203 (355)
Q Consensus       124 ~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA  203 (355)
                      |+||++|+++|++||++++...|+.+|++.+...+++++|..+|+..    +..+|||||||+|||+|.|++++||+++|
T Consensus         1 ~~iL~~Ii~~k~~ev~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~----~~~~vIaEiKraSPs~G~i~~~~d~~~~a   76 (695)
T PRK13802          1 MSVLDELVAGALEDQRTRELTVSLEEVKKAAAAAPAPIDATRWLKRA----DGIPVIAEIKRASPSKGHLSDIPDPAALA   76 (695)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhCCCcccHHHHHhhC----CCCeEEEEeecCCCCCCcCCCCCCHHHHH
Confidence            47999999999999999999999999999877778889999999753    34789999999999999999999999999


Q ss_pred             HHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHH
Q 018446          204 RSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKI  283 (355)
Q Consensus       204 ~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~  283 (355)
                      +.|+++||+|||||||++||+||++||..||++ +++||||||||||+|||+|||.+||||||||+++|++++|++|+++
T Consensus        77 ~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~-v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~  155 (695)
T PRK13802         77 REYEQGGASAISVLTEGRRFLGSLDDFDKVRAA-VHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDL  155 (695)
T ss_pred             HHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHh-CCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHH
Confidence            999999999999999999999999999999996 9999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccccccccCceEEecc
Q 018446          284 CKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGP  352 (355)
Q Consensus       284 A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~~~l~~~~i~~V~~  352 (355)
                      |++|||++||||||++|+++|+++ |++|||||||||+||+||+++|++|++.+|.      ++++|.|
T Consensus       156 a~~lGme~LvEvh~~~el~~a~~~-ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~------~~~~VsE  217 (695)
T PRK13802        156 AHELGMTVLVETHTREEIERAIAA-GAKVIGINARNLKDLKVDVNKYNELAADLPD------DVIKVAE  217 (695)
T ss_pred             HHHcCCeEEEEeCCHHHHHHHHhC-CCCEEEEeCCCCccceeCHHHHHHHHhhCCC------CcEEEEc
Confidence            999999999999999999999997 9999999999999999999999999987653      3356655

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=100.00  E-value=2.3e-56  Score=421.16  Aligned_cols=209  Identities=56%  Similarity=0.850  Sum_probs=199.8

Q ss_pred             cccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHH
Q 018446          123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEI  202 (355)
Q Consensus       123 p~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~i  202 (355)
                      ++++|++|+++|+++|+.++...|+++|++.+...|.+++|..+|+.     ++++|||||||+|||+|+|+.++||+++
T Consensus         1 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~vIaeik~~sps~g~i~~~~~~~~~   75 (260)
T PRK00278          1 MMDILDKIVAYKREEVAARKAQVPLAELKARAAAAPPPRDFAAALRA-----GKPAVIAEVKKASPSKGVIREDFDPVEI   75 (260)
T ss_pred             CccHHHHHHHHHHHHHHHHhccCCHHHHHHHHhhCCCCcCHHHHHhc-----CCCeEEEEeeCCCCCCCccCCCCCHHHH
Confidence            46899999999999999999999999999988777778999999973     3589999999999999999999999999


Q ss_pred             HHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHH
Q 018446          203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTK  282 (355)
Q Consensus       203 A~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~  282 (355)
                      |+.|+++||+|||||||++||+|+++||..||++ +++|||+||||+|+|||++|+.+|||+|+|+++.|++++|++|++
T Consensus        76 A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~  154 (260)
T PRK00278         76 AKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLD  154 (260)
T ss_pred             HHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHH
Confidence            9999999999999999999999999999999996 999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcccc
Q 018446          283 ICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGER  338 (355)
Q Consensus       283 ~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~  338 (355)
                      +|+++||++||||||.+|+++|.++ |+++|||||||+.||++|++++.+|++.++
T Consensus       155 ~a~~lGl~~lvevh~~~E~~~A~~~-gadiIgin~rdl~~~~~d~~~~~~l~~~~p  209 (260)
T PRK00278        155 YAHSLGLDVLVEVHDEEELERALKL-GAPLIGINNRNLKTFEVDLETTERLAPLIP  209 (260)
T ss_pred             HHHHcCCeEEEEeCCHHHHHHHHHc-CCCEEEECCCCcccccCCHHHHHHHHHhCC
Confidence            9999999999999999999999997 999999999999999999999999987654

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=100.00  E-value=1.6e-33  Score=255.69  Aligned_cols=160  Identities=57%  Similarity=0.914  Sum_probs=154.5

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI  254 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI  254 (355)
                      ++.+||||+||+|||+|.++...||.++|+.|+++||++|+|+|++.+|+|+++++..||+. +++||+.||||+++||+
T Consensus         9 ~~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-v~iPi~~~~~i~~~~~v   87 (217)
T cd00331           9 GGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-VSLPVLRKDFIIDPYQI   87 (217)
T ss_pred             CCceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-cCCCEEECCeecCHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999996 89999999999999999


Q ss_pred             HHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhh
Q 018446          255 YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLL  334 (355)
Q Consensus       255 ~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~  334 (355)
                      .+++.+|||+|+|....++.++++++++.+..+|++++++||+.+|++++.++ |++.||+|+||.+++..|++.+.+|.
T Consensus        88 ~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~-g~~~i~~t~~~~~~~~~~~~~~~~l~  166 (217)
T cd00331          88 YEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALAL-GAKIIGINNRDLKTFEVDLNTTERLA  166 (217)
T ss_pred             HHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHc-CCCEEEEeCCCccccCcCHHHHHHHH
Confidence            99999999999999999998899999999999999999999999999999997 99999999999999999999998887


Q ss_pred             cc
Q 018446          335 EG  336 (355)
Q Consensus       335 ~~  336 (355)
                      +.
T Consensus       167 ~~  168 (217)
T cd00331         167 PL  168 (217)
T ss_pred             Hh
Confidence            65

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=99.69  E-value=1.4e-16  Score=145.60  Aligned_cols=147  Identities=20%  Similarity=0.239  Sum_probs=122.0

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---ccc-----ccc
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKE-----FIV  249 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rKD-----FII  249 (355)
                      ++|.-+.-.  +.+.|++..++.++|++|.++||.|+++.        ++++++.+|+. +++|+|   +||     |++
T Consensus         6 ~~~~~~~~~--~~~~~~~~~~~~~~a~a~~~~G~~~~~~~--------~~~~i~~i~~~-~~~Pil~~~~~d~~~~~~~~   74 (221)
T PRK01130          6 GLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRAN--------GVEDIKAIRAV-VDVPIIGIIKRDYPDSEVYI   74 (221)
T ss_pred             CEEEEecCC--CCCCCCCHHHHHHHHHHHHHCCCeEEEcC--------CHHHHHHHHHh-CCCCEEEEEecCCCCCCceE
Confidence            355444333  23568888999999999999999999984        48999999986 899998   888     678


Q ss_pred             CHH--HHHHHHHcCCcchHHHHhcCC-H--HHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC--
Q 018446          250 DAW--QIYYARTKGADAVLLIAAVLP-D--LDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLE--  321 (355)
Q Consensus       250 dpy--QI~eAr~~GADAVLLIaaiL~-~--~~L~~L~~~A~~-LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~--  321 (355)
                      +++  |+.+|+.+|||+|+++...+. +  +++.++++.+++ .|+..++++||.+|+.++.++ |+++|++|++++.  
T Consensus        75 ~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~-G~d~i~~~~~g~t~~  153 (221)
T PRK01130         75 TPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKL-GFDFIGTTLSGYTEE  153 (221)
T ss_pred             CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc-CCCEEEcCCceeecC
Confidence            877  899999999999999888763 2  688999999999 999999999999999999997 9999999988774  


Q ss_pred             ---ccccChhhHHhhhcc
Q 018446          322 ---TFEVDNSNTKKLLEG  336 (355)
Q Consensus       322 ---TfevDl~~t~~L~~~  336 (355)
                         ++..+++...++.+.
T Consensus       154 ~~~~~~~~~~~i~~i~~~  171 (221)
T PRK01130        154 TKKPEEPDFALLKELLKA  171 (221)
T ss_pred             CCCCCCcCHHHHHHHHHh
Confidence               344556666666554

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=99.67  E-value=5.2e-16  Score=141.81  Aligned_cols=147  Identities=19%  Similarity=0.227  Sum_probs=125.5

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---cccc-----cc
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKEF-----IV  249 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rKDF-----II  249 (355)
                      ++|.-+.--  ++|.+++..++.++|++|.++|+.++|+        |++++++.+|+. +++|+|   +|||     ++
T Consensus        10 ~~~~~~~~~--~~~~~~~~~~i~~~a~~~~~~G~~~~~~--------~~~~~~~~i~~~-~~iPil~~~~~~~~~~~~~i   78 (219)
T cd04729          10 GLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRA--------NGVEDIRAIRAR-VDLPIIGLIKRDYPDSEVYI   78 (219)
T ss_pred             CeEEEccCC--CCCCcCcHHHHHHHHHHHHHCCCeEEEc--------CCHHHHHHHHHh-CCCCEEEEEecCCCCCCcee
Confidence            577766555  7899999999999999999999999996        899999999986 899998   7999     78


Q ss_pred             CHH--HHHHHHHcCCcchHHHHhcCC--H-HHHHHHHHHHHHcC-CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC--
Q 018446          250 DAW--QIYYARTKGADAVLLIAAVLP--D-LDIRYMTKICKLLG-LTALVEVHDEREMDRVLGIEGIELIGINNRNLE--  321 (355)
Q Consensus       250 dpy--QI~eAr~~GADAVLLIaaiL~--~-~~L~~L~~~A~~LG-LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~--  321 (355)
                      ++|  |+.+++.+|||+|+++...+.  . +.+.++++.++++| +..++++||.+|+.++.++ |+++|++|++++.  
T Consensus        79 g~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~-G~d~i~~~~~g~t~~  157 (219)
T cd04729          79 TPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALNAAKL-GFDIIGTTLSGYTEE  157 (219)
T ss_pred             CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHc-CCCEEEccCcccccc
Confidence            888  999999999999999888763  2 37899999999999 9999999999999999997 9999999877543  


Q ss_pred             ---ccccChhhHHhhhcc
Q 018446          322 ---TFEVDNSNTKKLLEG  336 (355)
Q Consensus       322 ---TfevDl~~t~~L~~~  336 (355)
                         +...+++...++.+.
T Consensus       158 ~~~~~~~~~~~l~~i~~~  175 (219)
T cd04729         158 TAKTEDPDFELLKELRKA  175 (219)
T ss_pred             ccCCCCCCHHHHHHHHHh
Confidence               344566666666544

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=99.24  E-value=1.5e-11  Score=113.09  Aligned_cols=135  Identities=17%  Similarity=0.150  Sum_probs=112.5

Q ss_pred             CCCCHHHHHHHHHHcCceEEEEe------ccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446          195 EDFDPVEIARSYEKGGAACLSIL------TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI  268 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISVL------TD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI  268 (355)
                      ...|+.++++.|.++|++|++|+      |++.| .|+...+..++. .+.+|.+++|+....+|+.+|..+|||+|.+.
T Consensus        19 ~~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~-~~~~~~i~~~~~-~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~   96 (235)
T cd00958          19 GLEDPEETVKLAAEGGADAVALTKGIARAYGREY-AGDIPLIVKLNG-STSLSPKDDNDKVLVASVEDAVRLGADAVGVT   96 (235)
T ss_pred             cccCHHHHHHHHHhcCCCEEEeChHHHHhccccc-CCCCcEEEEECC-CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEE
Confidence            46699999999999999999999      99888 577667766665 36677779999999999999999999999887


Q ss_pred             HhcCCHH------HHHHHHHHHHHcCCcEEEEeCC----------HHHHHH----HhccCCCeEEEeeCCCCCccccChh
Q 018446          269 AAVLPDL------DIRYMTKICKLLGLTALVEVHD----------EREMDR----VLGIEGIELIGINNRNLETFEVDNS  328 (355)
Q Consensus       269 aaiL~~~------~L~~L~~~A~~LGLeaLVEVH~----------~eELer----Al~l~ga~iIGINNRdL~TfevDl~  328 (355)
                      .......      ++..+.+.|+.+|+..+||+|.          .+++++    +.++ ||++|++++      ..|++
T Consensus        97 ~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~-GaD~Ik~~~------~~~~~  169 (235)
T cd00958          97 VYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAEL-GADIVKTKY------TGDAE  169 (235)
T ss_pred             EecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHH-CCCEEEecC------CCCHH
Confidence            7766543      7888889999999999999976          677777    6675 999999963      34888


Q ss_pred             hHHhhhcccc
Q 018446          329 NTKKLLEGER  338 (355)
Q Consensus       329 ~t~~L~~~~~  338 (355)
                      ..+++.+..+
T Consensus       170 ~~~~i~~~~~  179 (235)
T cd00958         170 SFKEVVEGCP  179 (235)
T ss_pred             HHHHHHhcCC
Confidence            8888876543

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=99.22  E-value=1.1e-10  Score=106.78  Aligned_cols=136  Identities=19%  Similarity=0.223  Sum_probs=111.0

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCH---HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~---edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      -||.++|+.|.+.||.+|+|++...+|.|+.   +.++.+++. +++|++.+++|.+..|+.++..+|||+|++....+.
T Consensus        28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~-~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~  106 (230)
T TIGR00007        28 DDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRE-TGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE  106 (230)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence            3899999999999999999999999998874   777888875 899999999999999999999999999999988886


Q ss_pred             HHHHHHHHHHHHHcCCcEEE----------EeC--------CHHHHHH-HhccCCCe--EEEeeCCCCCccccChhhHHh
Q 018446          274 DLDIRYMTKICKLLGLTALV----------EVH--------DEREMDR-VLGIEGIE--LIGINNRNLETFEVDNSNTKK  332 (355)
Q Consensus       274 ~~~L~~L~~~A~~LGLeaLV----------EVH--------~~eELer-Al~l~ga~--iIGINNRdL~TfevDl~~t~~  332 (355)
                      +  ...+.++++.+|++.++          .+|        +..++.+ ..+. |++  ++.-++|+-.+...|++...+
T Consensus       107 d--~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~-g~~~ii~~~~~~~g~~~g~~~~~i~~  183 (230)
T TIGR00007       107 N--PDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEEL-GLEGIIYTDISRDGTLSGPNFELTKE  183 (230)
T ss_pred             C--HHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhC-CCCEEEEEeecCCCCcCCCCHHHHHH
Confidence            4  45678899999988654          333        3334433 3343 766  556677888889999999888


Q ss_pred             hhcc
Q 018446          333 LLEG  336 (355)
Q Consensus       333 L~~~  336 (355)
                      +.+.
T Consensus       184 i~~~  187 (230)
T TIGR00007       184 LVKA  187 (230)
T ss_pred             HHHh
Confidence            8765

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=98.98  E-value=6.3e-09  Score=95.19  Aligned_cols=144  Identities=20%  Similarity=0.186  Sum_probs=110.0

Q ss_pred             CCCHHHHHHHHHHcCceEEEEeccCCCCCCCH---HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~---edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      ..||.++|+.|.+.|++.|.|++...++.|+.   +.++.+++. +++||+..++|-+..|+.++...|||.|++-.+++
T Consensus        29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l  107 (233)
T PRK00748         29 SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAV  107 (233)
T ss_pred             cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence            45999999999999999999999988888854   445555575 88999999999999999999999999999999998


Q ss_pred             CHH-HHHHHHHHH---HHcCCcE---EEEeCCH--------HHHHHHhccCCCe-EEEe-eCCCCCccccChhhHHhhhc
Q 018446          273 PDL-DIRYMTKIC---KLLGLTA---LVEVHDE--------REMDRVLGIEGIE-LIGI-NNRNLETFEVDNSNTKKLLE  335 (355)
Q Consensus       273 ~~~-~L~~L~~~A---~~LGLea---LVEVH~~--------eELerAl~l~ga~-iIGI-NNRdL~TfevDl~~t~~L~~  335 (355)
                      ++. .++++.+..   ..+.+++   .|++|..        .|+.+.+.-.|++ ++.. ++|+......|++...++.+
T Consensus       108 ~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~  187 (233)
T PRK00748        108 KNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAA  187 (233)
T ss_pred             hCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHH
Confidence            753 455555542   2245554   5666643        5666655533777 5555 67888889999999999976


Q ss_pred             ccccc
Q 018446          336 GERGE  340 (355)
Q Consensus       336 ~~~~~  340 (355)
                      ..+.+
T Consensus       188 ~~~ip  192 (233)
T PRK00748        188 AVPIP  192 (233)
T ss_pred             hCCCC
Confidence            54433

>PRK04302 triosephosphate isomerase; Provisional

Probab=98.69  E-value=5.7e-08  Score=89.80  Aligned_cols=102  Identities=17%  Similarity=0.161  Sum_probs=88.3

Q ss_pred             CCCCCHHHHHHHHhcCCCCCeeccccccCHHH-------HHHHHHcCCcchHHHHh--cCCHHHHHHHHHHHHHcCCcEE
Q 018446          222 YFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQ-------IYYARTKGADAVLLIAA--VLPDLDIRYMTKICKLLGLTAL  292 (355)
Q Consensus       222 fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQ-------I~eAr~~GADAVLLIaa--iL~~~~L~~L~~~A~~LGLeaL  292 (355)
                      ++-.++.+|..+++. +++|+...|+-..+++       +..++.+|||+||+..+  .+..+++.++++.|+++||+++
T Consensus        40 ~~~p~~~~l~~v~~~-~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I  118 (223)
T PRK04302         40 AVAPQALDIRRVAEE-VDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESV  118 (223)
T ss_pred             EEECCHHHHHHHHHh-cCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEE
Confidence            455899999999986 8999999998776666       55668899999999875  6778899999999999999999


Q ss_pred             EEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          293 VEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       293 VEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      +++|+.++++++... +.++|++++|++.+..+
T Consensus       119 ~~v~~~~~~~~~~~~-~~~~I~~~p~~~igt~~  150 (223)
T PRK04302        119 VCVNNPETSAAAAAL-GPDYVAVEPPELIGTGI  150 (223)
T ss_pred             EEcCCHHHHHHHhcC-CCCEEEEeCccccccCC
Confidence            999999999998876 88999999998765543

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=98.65  E-value=1.9e-07  Score=87.61  Aligned_cols=107  Identities=21%  Similarity=0.276  Sum_probs=86.5

Q ss_pred             HHHHHHHHhcCCCCCee-c---cccccCHHH-HHHHHHcCCcchHHHHhcCC-HHHHHHHHHHHHHcCCcEEEEeCC---
Q 018446          227 FENLEAVRSAGVKCPLL-C---KEFIVDAWQ-IYYARTKGADAVLLIAAVLP-DLDIRYMTKICKLLGLTALVEVHD---  297 (355)
Q Consensus       227 ~edL~~VR~a~v~lPVL-r---KDFIIdpyQ-I~eAr~~GADAVLLIaaiL~-~~~L~~L~~~A~~LGLeaLVEVH~---  297 (355)
                      ++.++++|+. +++|++ +   ++|+.++.+ +.+++.+|||+|++....++ .+++.++++.++++||+++++||.   
T Consensus        63 ~~~v~~vr~~-~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~  141 (244)
T PRK13125         63 WPLLEEVRKD-VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP  141 (244)
T ss_pred             HHHHHHHhcc-CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence            8999999985 899974 3   888889999 78899999999999755443 468899999999999999999999   


Q ss_pred             HHHHHHHhcc-CCCeEEEeeCCCCCccccChhhH-Hhhh
Q 018446          298 EREMDRVLGI-EGIELIGINNRNLETFEVDNSNT-KKLL  334 (355)
Q Consensus       298 ~eELerAl~l-~ga~iIGINNRdL~TfevDl~~t-~~L~  334 (355)
                      .++++..++. ++.-++++|++...+|..++... .++.
T Consensus       142 ~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr  180 (244)
T PRK13125        142 DLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVR  180 (244)
T ss_pred             HHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHH
Confidence            6678877764 23344599999999998887644 4443

>cd04732 HisA HisA

Probab=98.24  E-value=2.5e-05  Score=71.51  Aligned_cols=138  Identities=20%  Similarity=0.198  Sum_probs=103.2

Q ss_pred             CCCHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          196 DFDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      ..||.++|+.|.+.||++|.|......|.|   .++.++.+++. +++||.....|-++-|+.+....|||.|++-.+.+
T Consensus        28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~-~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l  106 (234)
T cd04732          28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA-VGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV  106 (234)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence            349999999999999999999988777765   46777777775 78999999999999999999999999998877777


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEe------------------CCHHHHHHHhccCCCeEEEeeCCCCCc--cccChhhHHh
Q 018446          273 PDLDIRYMTKICKLLGLTALVEV------------------HDEREMDRVLGIEGIELIGINNRNLET--FEVDNSNTKK  332 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLVEV------------------H~~eELerAl~l~ga~iIGINNRdL~T--fevDl~~t~~  332 (355)
                      .+  ...+.++++.+|-+.++-.                  ++..|+-+.+.-.|++-|-+.+++-..  -..|.+...+
T Consensus       107 ~d--p~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~  184 (234)
T cd04732         107 KN--PELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKE  184 (234)
T ss_pred             hC--hHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHH
Confidence            54  4456777888887544332                  245555554543478888887764432  2255666666


Q ss_pred             hhcc
Q 018446          333 LLEG  336 (355)
Q Consensus       333 L~~~  336 (355)
                      +...
T Consensus       185 i~~~  188 (234)
T cd04732         185 LAAA  188 (234)
T ss_pred             HHHh
Confidence            6543

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=98.18  E-value=1.5e-05  Score=72.09  Aligned_cols=109  Identities=20%  Similarity=0.283  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI  277 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L  277 (355)
                      +..++++...++|+.+|-|-....   ...+.++.+++. ..-..+-=.-+++..|+.+|..+|||.|.+     +. ..
T Consensus        17 ~~~~~~~~l~~~G~~~vev~~~~~---~~~~~i~~l~~~-~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~-----p~-~~   86 (190)
T cd00452          17 DALALAEALIEGGIRAIEITLRTP---GALEAIRALRKE-FPEALIGAGTVLTPEQADAAIAAGAQFIVS-----PG-LD   86 (190)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHH-CCCCEEEEEeCCCHHHHHHHHHcCCCEEEc-----CC-CC
Confidence            566889999999999999876644   366778888764 221122334468899999999999999853     32 34


Q ss_pred             HHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          278 RYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                      .++.++++.+|+..+++|.|.+|+.+|++. |+++|++..
T Consensus        87 ~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~-Gad~i~~~p  125 (190)
T cd00452          87 PEVVKAANRAGIPLLPGVATPTEIMQALEL-GADIVKLFP  125 (190)
T ss_pred             HHHHHHHHHcCCcEECCcCCHHHHHHHHHC-CCCEEEEcC
Confidence            578999999999999999999999999996 999999843

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=98.17  E-value=9.5e-06  Score=69.28  Aligned_cols=128  Identities=23%  Similarity=0.217  Sum_probs=101.0

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHH----HHHHHhcCCCCCeeccccccCHHHHH-----HHHHcCCcchHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFEN----LEAVRSAGVKCPLLCKEFIVDAWQIY-----YARTKGADAVLLI  268 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~ed----L~~VR~a~v~lPVLrKDFIIdpyQI~-----eAr~~GADAVLLI  268 (355)
                      ++.++++.+.++|+.++-+.+-...+.+....    +..+++. +++|++...++.+++|..     .++.+|+|+|.|.
T Consensus        13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~   91 (200)
T cd04722          13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIH   91 (200)
T ss_pred             HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEe
Confidence            67889999999999999998877666666443    6667664 789999999999999976     7999999999998


Q ss_pred             HhcCC-HHHHHHHHHHHHHc--CCcEEEEeCCHHHHHHH--hccCCCeEEEeeCCCCCccccCh
Q 018446          269 AAVLP-DLDIRYMTKICKLL--GLTALVEVHDEREMDRV--LGIEGIELIGINNRNLETFEVDN  327 (355)
Q Consensus       269 aaiL~-~~~L~~L~~~A~~L--GLeaLVEVH~~eELerA--l~l~ga~iIGINNRdL~TfevDl  327 (355)
                      ..... .+.+.++++..++.  ++...+.++...+.+.+  ... |++.|.+.++...+...+.
T Consensus        92 ~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~-g~d~i~~~~~~~~~~~~~~  154 (200)
T cd04722          92 GAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEA-GVDEVGLGNGGGGGGGRDA  154 (200)
T ss_pred             ccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHc-CCCEEEEcCCcCCCCCccC
Confidence            77753 12344555555554  99999999988887775  554 8999999999988776654

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=98.15  E-value=8.6e-06  Score=73.43  Aligned_cols=115  Identities=20%  Similarity=0.274  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecccc-ccC--HHHHHHHHHcCCcchHHHHhcCCH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEF-IVD--AWQIYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDF-IId--pyQI~eAr~~GADAVLLIaaiL~~  274 (355)
                      +...+++.. .+|...|-|=|.- +....++-+..+|+...+.++.+ |+ +.|  .||+.++..+|||+|..-+ ..+.
T Consensus        13 ~a~~~~~~l-~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~~~~i~~-d~k~~d~~~~~~~~~~~~Gad~i~vh~-~~~~   88 (206)
T TIGR03128        13 EALELAEKV-ADYVDIIEIGTPL-IKNEGIEAVKEMKEAFPDRKVLA-DLKTMDAGEYEAEQAFAAGADIVTVLG-VADD   88 (206)
T ss_pred             HHHHHHHHc-ccCeeEEEeCCHH-HHHhCHHHHHHHHHHCCCCEEEE-EEeeccchHHHHHHHHHcCCCEEEEec-cCCH
Confidence            456788888 7899999993221 33456888999987522444443 55 334  5699999999999988443 3455


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeCCH----HHHHHHhccCCCeEEEeeC
Q 018446          275 LDIRYMTKICKLLGLTALVEVHDE----REMDRVLGIEGIELIGINN  317 (355)
Q Consensus       275 ~~L~~L~~~A~~LGLeaLVEVH~~----eELerAl~l~ga~iIGINN  317 (355)
                      ..+.+++++|+++||.+++++++.    +++..+.++ |+++|+++.
T Consensus        89 ~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~-g~d~v~~~p  134 (206)
T TIGR03128        89 ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKEL-GADYIGVHT  134 (206)
T ss_pred             HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHc-CCCEEEEcC
Confidence            578999999999999999999775    777888886 999999974

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=97.94  E-value=7.4e-05  Score=66.80  Aligned_cols=133  Identities=20%  Similarity=0.214  Sum_probs=95.4

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc--ccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK--EFIVDAWQIYYARTKGADAVLLIAAVLPDL  275 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK--DFIIdpyQI~eAr~~GADAVLLIaaiL~~~  275 (355)
                      +..++++.+.++ +.+|-|-+.- +-...++.++.+|+...++|+..-  =.-.+.|++.+++.+|||.|++..... ++
T Consensus        14 ~~~~~~~~l~~~-i~~ieig~~~-~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~-~~   90 (202)
T cd04726          14 EALELAKKVPDG-VDIIEAGTPL-IKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP-LS   90 (202)
T ss_pred             HHHHHHHHhhhc-CCEEEcCCHH-HHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC-HH
Confidence            456788888887 8887772221 112348899999885357888763  222334789999999999999887654 35


Q ss_pred             HHHHHHHHHHHcCCcEEEE---eCCHHHHHHHhccCCCeEEEee-CCCCCcc--ccChhhHHhhh
Q 018446          276 DIRYMTKICKLLGLTALVE---VHDEREMDRVLGIEGIELIGIN-NRNLETF--EVDNSNTKKLL  334 (355)
Q Consensus       276 ~L~~L~~~A~~LGLeaLVE---VH~~eELerAl~l~ga~iIGIN-NRdL~Tf--evDl~~t~~L~  334 (355)
                      .+.++++++++.|+..+++   .+|.+|+.+++.. +++.++++ +++-.++  ....+...++.
T Consensus        91 ~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~-~~d~v~~~~~~~~~~~~~~~~~~~i~~~~  154 (202)
T cd04726          91 TIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL-GVDIVILHRGIDAQAAGGWWPEDDLKKVK  154 (202)
T ss_pred             HHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC-CCCEEEEcCcccccccCCCCCHHHHHHHH
Confidence            7889999999999999975   4599999998875 99999995 6666666  23344444443

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=97.77  E-value=0.00035  Score=64.90  Aligned_cols=135  Identities=15%  Similarity=0.198  Sum_probs=96.6

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCC-eeccccccCHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP-LLCKEFIVDAWQIYY  256 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lP-VLrKDFIIdpyQI~e  256 (355)
                      .+|+=+.-.++.        +..+++++..++|..+|=|--...   +.++.|+.+++. ..-| ++===-++++.|+..
T Consensus        11 ~~~~v~r~~~~~--------~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~-~~~~~~iGaGTV~~~~~~~~   78 (206)
T PRK09140         11 PLIAILRGITPD--------EALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKA-LGDRALIGAGTVLSPEQVDR   78 (206)
T ss_pred             CEEEEEeCCCHH--------HHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHH-cCCCcEEeEEecCCHHHHHH
Confidence            366666444443        567899999999999998853322   566788888764 2212 111112678999999


Q ss_pred             HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhc
Q 018446          257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE  335 (355)
Q Consensus       257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~  335 (355)
                      |+.+|||.+++      +..-.++.+.|+..|+..++.+||.+|+.+|.+. |++.|++    +.+-.+.++.-..+..
T Consensus        79 a~~aGA~fivs------p~~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~-Gad~vk~----Fpa~~~G~~~l~~l~~  146 (206)
T PRK09140         79 LADAGGRLIVT------PNTDPEVIRRAVALGMVVMPGVATPTEAFAALRA-GAQALKL----FPASQLGPAGIKALRA  146 (206)
T ss_pred             HHHcCCCEEEC------CCCCHHHHHHHHHCCCcEEcccCCHHHHHHHHHc-CCCEEEE----CCCCCCCHHHHHHHHh
Confidence            99999999766      3334578899999999999999999999999997 9999998    2233344555555543

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=97.33  E-value=0.0019  Score=63.33  Aligned_cols=119  Identities=21%  Similarity=0.219  Sum_probs=90.6

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe----ccCCCCCC-----CHHHHHHHHhcCCCCCeeccccc
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFI  248 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL----TD~~fF~G-----S~edL~~VR~a~v~lPVLrKDFI  248 (355)
                      +||.+|.              -+++|+.-+++||.++-||    .|..--+|     +.+|++.|++. |++||+-+-=+
T Consensus        10 g~~~~v~--------------~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~-V~iPVIGi~K~   74 (283)
T cd04727          10 GVIMDVT--------------NAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDA-VSIPVMAKVRI   74 (283)
T ss_pred             CeEEEeC--------------CHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHh-CCCCeEEeeeh
Confidence            5888883              2479999999999998887    56655555     68999999996 99998765444


Q ss_pred             cCHHHHHHHHHcCCcchHHHHhc--CCHHHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          249 VDAWQIYYARTKGADAVLLIAAV--LPDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       249 IdpyQI~eAr~~GADAVLLIaai--L~~~~L~~L~~~A~~-LGLeaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                      -+-..+.+-..+|+|-|   .+-  +.+  +.+++.+.+. ++.-.+-.+.|.+|..+|.++ |+++||--.
T Consensus        75 ~~~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~~~l~MAD~stleEal~a~~~-Gad~I~TTl  140 (283)
T cd04727          75 GHFVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKFKVPFVCGARNLGEALRRISE-GAAMIRTKG  140 (283)
T ss_pred             hHHHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHcCCcEEccCCCHHHHHHHHHC-CCCEEEecC
Confidence            33344444456899998   332  333  5677877776 588888899999999999997 999999875

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.25  E-value=0.0035  Score=57.25  Aligned_cols=117  Identities=13%  Similarity=0.112  Sum_probs=87.3

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeec--cccccCHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC--KEFIVDAWQIY  255 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLr--KDFIIdpyQI~  255 (355)
                      .||+-+.-.+|.        +..++++...++|+.++=+--...   +..+.+..+++.   .|.++  -..++..-|+.
T Consensus        13 ~~~~v~r~~~~~--------~~~~~~~~~~~~Gv~~vqlr~k~~---~~~e~~~~~~~~---~~~~~~g~gtvl~~d~~~   78 (187)
T PRK07455         13 RAIAVIRAPDLE--------LGLQMAEAVAAGGMRLIEITWNSD---QPAELISQLREK---LPECIIGTGTILTLEDLE   78 (187)
T ss_pred             CEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEeCCCC---CHHHHHHHHHHh---CCCcEEeEEEEEcHHHHH
Confidence            366666544443        466788999999999988753222   567778888764   35432  33566668999


Q ss_pred             HHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       256 eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      .|..+|||.|.+=  -++    .+..++|+.+|+..++=+||.+|+.+|.+. |++.|++
T Consensus        79 ~A~~~gAdgv~~p--~~~----~~~~~~~~~~~~~~i~G~~t~~e~~~A~~~-Gadyv~~  131 (187)
T PRK07455         79 EAIAAGAQFCFTP--HVD----PELIEAAVAQDIPIIPGALTPTEIVTAWQA-GASCVKV  131 (187)
T ss_pred             HHHHcCCCEEECC--CCC----HHHHHHHHHcCCCEEcCcCCHHHHHHHHHC-CCCEEEE
Confidence            9999999997542  233    345788999999999999999999999986 9999999

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=97.21  E-value=0.0033  Score=61.83  Aligned_cols=134  Identities=25%  Similarity=0.319  Sum_probs=91.1

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe-----ccCCCCCCCH-----HHHHHHHhcCCCCCeecc--
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKGSF-----ENLEAVRSAGVKCPLLCK--  245 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL-----TD~~fF~GS~-----edL~~VR~a~v~lPVLrK--  245 (355)
                      .||+-+-..||.        +..++|+..++.||++|=+.     .++..++++.     +.+..+|++ +++||+.|  
T Consensus       101 pvi~si~g~~~~--------~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~~iPv~vKl~  171 (325)
T cd04739         101 PVIASLNGVSAG--------GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-VTIPVAVKLS  171 (325)
T ss_pred             eEEEEeCCCCHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-cCCCEEEEcC
Confidence            588888554441        34688999999999999553     4566666665     567788885 89999999  


Q ss_pred             -ccccCHHHHHHHHHcCCcchHHHHhcCCH----------------------HHHHHHHHHHHHcCCcEEE--EeCCHHH
Q 018446          246 -EFIVDAWQIYYARTKGADAVLLIAAVLPD----------------------LDIRYMTKICKLLGLTALV--EVHDERE  300 (355)
Q Consensus       246 -DFIIdpyQI~eAr~~GADAVLLIaaiL~~----------------------~~L~~L~~~A~~LGLeaLV--EVH~~eE  300 (355)
                       ++---..-...+..+|||+|.++-.....                      .-|+.+.+.+...++..+-  -|+|.+|
T Consensus       172 p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~D  251 (325)
T cd04739         172 PFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAED  251 (325)
T ss_pred             CCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHH
Confidence             54311223344678899999998765221                      1123334444555554332  5899999


Q ss_pred             HHHHhccCCCeEEEeeCCCCC
Q 018446          301 MDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       301 LerAl~l~ga~iIGINNRdL~  321 (355)
                      +.+.+.+ ||+.|+|---.+.
T Consensus       252 a~e~l~a-GA~~Vqv~ta~~~  271 (325)
T cd04739         252 VVKYLLA-GADVVMTTSALLR  271 (325)
T ss_pred             HHHHHHc-CCCeeEEehhhhh
Confidence            9999986 9999999854443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.09  E-value=0.008  Score=59.06  Aligned_cols=134  Identities=26%  Similarity=0.365  Sum_probs=90.9

Q ss_pred             ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe-----ccCCCCCCC-----HHHHHHHHhcCCCCCeecc-
Q 018446          177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKGS-----FENLEAVRSAGVKCPLLCK-  245 (355)
Q Consensus       177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL-----TD~~fF~GS-----~edL~~VR~a~v~lPVLrK-  245 (355)
                      ..||+-|-..++-        +..++|+.+++.||++|-+.     .++.+.++.     .+.++.+|++ +++||+.| 
T Consensus       102 ~pvi~sI~g~~~~--------e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~-~~iPV~vKl  172 (334)
T PRK07565        102 IPVIASLNGSSAG--------GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA-VSIPVAVKL  172 (334)
T ss_pred             CcEEEEeccCCHH--------HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc-cCCcEEEEe
Confidence            3689988554442        45689999999999999883     344444333     3556788885 89999999 


Q ss_pred             --ccccCHHHHHH-HHHcCCcchHHHHhcCCH----------------------HHHHHHHHHHHHcCCcEEE--EeCCH
Q 018446          246 --EFIVDAWQIYY-ARTKGADAVLLIAAVLPD----------------------LDIRYMTKICKLLGLTALV--EVHDE  298 (355)
Q Consensus       246 --DFIIdpyQI~e-Ar~~GADAVLLIaaiL~~----------------------~~L~~L~~~A~~LGLeaLV--EVH~~  298 (355)
                        ++ -+.-.+.. +..+|||+|.++-.....                      .-++...++.+.+++..+-  -|+|.
T Consensus       173 ~p~~-~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~  251 (334)
T PRK07565        173 SPYF-SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDA  251 (334)
T ss_pred             CCCc-hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCH
Confidence              33 24445544 567999999887765321                      1123333444555554332  48999


Q ss_pred             HHHHHHhccCCCeEEEeeCCCCC
Q 018446          299 REMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       299 eELerAl~l~ga~iIGINNRdL~  321 (355)
                      +|+.+.+.+ ||+.|+|-.=.+.
T Consensus       252 ~Da~e~l~a-GA~~V~v~t~~~~  273 (334)
T PRK07565        252 EDVIKMLLA-GADVVMIASALLR  273 (334)
T ss_pred             HHHHHHHHc-CCCceeeehHHhh
Confidence            999999986 9999999755444

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=96.90  E-value=0.0065  Score=56.77  Aligned_cols=115  Identities=17%  Similarity=0.272  Sum_probs=80.2

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---cc-----ccccCHH--HHHHHHHcCCcchHHHH
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CK-----EFIVDAW--QIYYARTKGADAVLLIA  269 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rK-----DFIIdpy--QI~eAr~~GADAVLLIa  269 (355)
                      ..+|++-+.+||.+|=..        +.+|++.+|+. +++||+   -+     |..|.|.  .+.+-..+|||-|-|=+
T Consensus         2 ~~mA~Aa~~gGA~giR~~--------~~~dI~aik~~-v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa   72 (192)
T PF04131_consen    2 ARMAKAAEEGGAVGIRAN--------GVEDIRAIKKA-VDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA   72 (192)
T ss_dssp             HHHHHHHHHCT-SEEEEE--------SHHHHHHHHTT-B-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-
T ss_pred             HHHHHHHHHCCceEEEcC--------CHHHHHHHHHh-cCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec
Confidence            468999999999998765        79999999996 999975   23     3334442  45666778999887744


Q ss_pred             hcC-CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          270 AVL-PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       270 aiL-~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                      .-= -+..|.+|++..++.+.-.+-.+.|.+|...|.++ |+++||---.-...-.
T Consensus        73 T~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~-G~D~I~TTLsGYT~~t  127 (192)
T PF04131_consen   73 TDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL-GFDIIGTTLSGYTPYT  127 (192)
T ss_dssp             SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT-T-SEEE-TTTTSSTTS
T ss_pred             CCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc-CCCEEEcccccCCCCC
Confidence            332 12679999999999998888899999999999998 9999998766554444

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=96.82  E-value=0.012  Score=52.72  Aligned_cols=115  Identities=19%  Similarity=0.166  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHcCceEEEEe-ccCCCCCCC---HHHHHHHHhcCCCCCeecccccc--CHHHHHHHHHcCCcchHHHHhcC
Q 018446          199 PVEIARSYEKGGAACLSIL-TDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIV--DAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVL-TD~~fF~GS---~edL~~VR~a~v~lPVLrKDFII--dpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      ..+.++...++||+.|=+- -|..|++++   ++.++.+|+. ++.|+. =|+.+  ....+.++..+|||.|.+-... 
T Consensus        13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~-~~~~v~-v~lm~~~~~~~~~~~~~~gadgv~vh~~~-   89 (210)
T TIGR01163        13 LGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKY-TDLPID-VHLMVENPDRYIEDFAEAGADIITVHPEA-   89 (210)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc-CCCcEE-EEeeeCCHHHHHHHHHHcCCCEEEEccCC-
Confidence            5578889999999999995 676676654   5677888874 677853 22222  3456888899999998876543 


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeCC
Q 018446          273 PDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINNR  318 (355)
                       .++....++.++.+|+...+-  .|+..|..+++.. +++.|++-..
T Consensus        90 -~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~-~~d~i~~~~~  135 (210)
T TIGR01163        90 -SEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLP-DVDLVLLMSV  135 (210)
T ss_pred             -chhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHh-hCCEEEEEEE
Confidence             345677789999999887665  6666665555542 5677666433

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.81  E-value=0.015  Score=54.61  Aligned_cols=120  Identities=21%  Similarity=0.247  Sum_probs=93.0

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCC--eeccccccCHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP--LLCKEFIVDAWQIY  255 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lP--VLrKDFIIdpyQI~  255 (355)
                      .||+=+.-.++.        +...+++++.++|..+|=|--..   .+.++-++.+++..-+-|  ++-==-++++-|..
T Consensus        14 ~vi~vir~~~~~--------~a~~~~~al~~~Gi~~iEit~~~---~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~   82 (213)
T PRK06552         14 GVVAVVRGESKE--------EALKISLAVIKGGIKAIEVTYTN---PFASEVIKELVELYKDDPEVLIGAGTVLDAVTAR   82 (213)
T ss_pred             CEEEEEECCCHH--------HHHHHHHHHHHCCCCEEEEECCC---ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHH
Confidence            366656444332        56789999999999999886553   367888888886411113  34445578999999


Q ss_pred             HHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       256 eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      .|..+||+-++      ++---.+++++|++.|+-.+--+||..|+.+|++. |+++|++
T Consensus        83 ~a~~aGA~Fiv------sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~-Gad~vkl  135 (213)
T PRK06552         83 LAILAGAQFIV------SPSFNRETAKICNLYQIPYLPGCMTVTEIVTALEA-GSEIVKL  135 (213)
T ss_pred             HHHHcCCCEEE------CCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHc-CCCEEEE
Confidence            99999999865      33334578999999999999999999999999996 9999998

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.77  E-value=0.0099  Score=61.88  Aligned_cols=119  Identities=17%  Similarity=0.169  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH--------HH
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL--------LI  268 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL--------LI  268 (355)
                      -+..+.++.+.++|+++|.|-+-..+=..-.+.++.+|+...++||+. +|+.+.-+...+..+|||+|-        -+
T Consensus       224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~t  302 (475)
T TIGR01303       224 GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGVGPGAMCT  302 (475)
T ss_pred             ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECCcCCcccc
Confidence            366789999999999999886655444444566777776545899999 999999999999999999997        55


Q ss_pred             HhcCCH---HHHHH---HHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeC
Q 018446          269 AAVLPD---LDIRY---MTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       269 aaiL~~---~~L~~---L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINN  317 (355)
                      .+.+..   .++..   +.+.|+..|...+-+  +++..++-+|+.+ ||+.+++-+
T Consensus       303 tr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~-GA~~vm~g~  358 (475)
T TIGR01303       303 TRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAA-GASNVMVGS  358 (475)
T ss_pred             CccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc-CCCEEeech
Confidence            565532   34444   455567889888887  8999999999997 998777643

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.72  E-value=0.014  Score=60.93  Aligned_cols=123  Identities=15%  Similarity=0.218  Sum_probs=93.2

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH-H--------
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL-I--------  268 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL-I--------  268 (355)
                      +-.+.+.+..++|+..|-|-+-..+-...++.++.+|+...++||... -+.++.+...+..+|||+|.. +        
T Consensus       241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG-~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t  319 (495)
T PTZ00314        241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAG-NVVTADQAKNLIDAGADGLRIGMGSGSICIT  319 (495)
T ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEEC-CcCCHHHHHHHHHcCCCEEEECCcCCccccc
Confidence            446889999999999999987422222346789999885347899997 578999999999999999853 1        


Q ss_pred             ---Hhc-CCH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCc
Q 018446          269 ---AAV-LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLET  322 (355)
Q Consensus       269 ---aai-L~~-~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~T  322 (355)
                         +.+ .+. ..+.++.++|++.|+..+.  =+++..|+-+|+.+ ||+.+.+-+.=..|
T Consensus       320 ~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~-GA~~Vm~G~~~a~~  379 (495)
T PTZ00314        320 QEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALAL-GADCVMLGSLLAGT  379 (495)
T ss_pred             chhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHc-CCCEEEECchhccc
Confidence               001 111 2345677788899999998  89999999999997 99999887764333

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=96.59  E-value=0.0075  Score=60.95  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=75.9

Q ss_pred             CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcCC--HHHHHHHHHHHHHcCCcEEEE--eCCH
Q 018446          226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVLP--DLDIRYMTKICKLLGLTALVE--VHDE  298 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL~--~~~L~~L~~~A~~LGLeaLVE--VH~~  298 (355)
                      ++++++.+|+. .+.|++.|+ |+++-....|..+|+|+|.+--   .-|+  ...+..|.++++..++..+++  |++-
T Consensus       224 ~w~~i~~ir~~-~~~pviiKg-V~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g  301 (361)
T cd04736         224 NWQDLRWLRDL-WPHKLLVKG-IVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRG  301 (361)
T ss_pred             CHHHHHHHHHh-CCCCEEEec-CCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCH
Confidence            58999999996 899999999 6899999999999999985311   0111  124667777788889999997  9999


Q ss_pred             HHHHHHhccCCCeEEEeeCCCCCcc
Q 018446          299 REMDRVLGIEGIELIGINNRNLETF  323 (355)
Q Consensus       299 eELerAl~l~ga~iIGINNRdL~Tf  323 (355)
                      .|+-+|+.+ ||+.++|-.-=|..+
T Consensus       302 ~Dv~KALaL-GA~aV~iGr~~l~~l  325 (361)
T cd04736         302 SDIVKALAL-GANAVLLGRATLYGL  325 (361)
T ss_pred             HHHHHHHHc-CCCEEEECHHHHHHH
Confidence            999999998 999999866544433

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=96.54  E-value=0.021  Score=59.19  Aligned_cols=123  Identities=15%  Similarity=0.204  Sum_probs=89.8

Q ss_pred             CCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH-----
Q 018446          193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL-----  267 (355)
Q Consensus       193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL-----  267 (355)
                      +..+-+..+.++.+.++|+..|-|-+...+-.|-++.+..+|+...++||+.++ +++.-+...+..+|||+|-.     
T Consensus       223 i~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~-v~t~e~a~~l~~aGad~i~vg~g~g  301 (486)
T PRK05567        223 VGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGN-VATAEAARALIEAGADAVKVGIGPG  301 (486)
T ss_pred             cccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEec-cCCHHHHHHHHHcCCCEEEECCCCC
Confidence            443335688999999999998865554344456778888998753489999965 77999999999999999853     


Q ss_pred             ---HHhcC---CHHHHHH---HHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeC
Q 018446          268 ---IAAVL---PDLDIRY---MTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       268 ---IaaiL---~~~~L~~---L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINN  317 (355)
                         +...+   +-.++..   ..+.|+..|...+.  -+++..|+-+|+.+ ||+.+.+-.
T Consensus       302 s~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~-GA~~v~~G~  361 (486)
T PRK05567        302 SICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAA-GASAVMLGS  361 (486)
T ss_pred             ccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHh-CCCEEEECc
Confidence               01111   1113444   44555567999998  79999999999997 998877643

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.49  E-value=0.029  Score=52.73  Aligned_cols=119  Identities=14%  Similarity=0.179  Sum_probs=94.4

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA  257 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA  257 (355)
                      .+|+=+.-.+|.        +..+++++..++|..+|=|--..   .+.++-++.+|+...+ -++==+-+++++|...|
T Consensus        16 ~~iaV~r~~~~~--------~a~~i~~al~~~Gi~~iEitl~~---~~~~~~I~~l~~~~p~-~~IGAGTVl~~~~a~~a   83 (212)
T PRK05718         16 PVVPVIVINKLE--------DAVPLAKALVAGGLPVLEVTLRT---PAALEAIRLIAKEVPE-ALIGAGTVLNPEQLAQA   83 (212)
T ss_pred             CEEEEEEcCCHH--------HHHHHHHHHHHcCCCEEEEecCC---ccHHHHHHHHHHHCCC-CEEEEeeccCHHHHHHH
Confidence            477766555554        56789999999999998876332   2577888888864222 35666889999999999


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      ..+|||-++-.  .+++    ++++.|+++|+..+=.+.|..|+..|.++ |+++|-+
T Consensus        84 ~~aGA~FivsP--~~~~----~vi~~a~~~~i~~iPG~~TptEi~~a~~~-Ga~~vKl  134 (212)
T PRK05718         84 IEAGAQFIVSP--GLTP----PLLKAAQEGPIPLIPGVSTPSELMLGMEL-GLRTFKF  134 (212)
T ss_pred             HHcCCCEEECC--CCCH----HHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEE
Confidence            99999976543  3443    67899999999999999999999999997 9999999

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=96.46  E-value=0.025  Score=50.77  Aligned_cols=107  Identities=22%  Similarity=0.264  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhc-----CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-----GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a-----~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      +..+..+...++|++++- +..+. . ...+.+..+++.     ..++|++-.      .++..+..+|||+|.+-...+
T Consensus        22 ~~~~~~~~~~~~gv~~v~-lr~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~~~~~   92 (212)
T PRK00043         22 DLLEVVEAALEGGVTLVQ-LREKG-L-DTRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLGQDDL   92 (212)
T ss_pred             cHHHHHHHHHhcCCCEEE-EeCCC-C-CHHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecCcccC
Confidence            466777777788998883 44432 1 234444333321     134566544      356789999999988765544


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR  318 (355)
                      ...    .++..+..|+-+=+.+||.+|+.++... |++.|++..-
T Consensus        93 ~~~----~~~~~~~~~~~~g~~~~t~~e~~~a~~~-gaD~v~~~~~  133 (212)
T PRK00043         93 PVA----DARALLGPDAIIGLSTHTLEEAAAALAA-GADYVGVGPI  133 (212)
T ss_pred             CHH----HHHHHcCCCCEEEEeCCCHHHHHHHhHc-CCCEEEECCc
Confidence            332    2233445677788899999999999986 9999997643

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=96.43  E-value=0.019  Score=56.52  Aligned_cols=111  Identities=22%  Similarity=0.212  Sum_probs=83.3

Q ss_pred             HHHHHHHHcCceEEEEe----ccCCCCCC-----CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446          201 EIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVL----TD~~fF~G-----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      ++|+.-+++||.|+-.|    .|-+--+|     +.++++.|+++ |++||+-|==|-|-.....--++|+|-|= =...
T Consensus        21 eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~-V~iPVig~~kigh~~Ea~~L~~~GvDiID-eTe~   98 (287)
T TIGR00343        21 EQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDA-VSIPVMAKVRIGHFVEAQILEALGVDYID-ESEV   98 (287)
T ss_pred             HHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHh-CCCCEEEEeeccHHHHHHHHHHcCCCEEE-ccCC
Confidence            69999999999999887    45555555     68999999996 99999766544443333333358999981 1123


Q ss_pred             CCHHHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhccCCCeEEEee
Q 018446          272 LPDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       272 L~~~~L~~L~~~A~~-LGLeaLVEVH~~eELerAl~l~ga~iIGIN  316 (355)
                      |.+  ..+++.+.+. ++.--+-.+.|.+|..++... |+++|+--
T Consensus        99 lrP--ade~~~~~K~~f~vpfmad~~~l~EAlrai~~-GadmI~Tt  141 (287)
T TIGR00343        99 LTP--ADWTFHIDKKKFKVPFVCGARDLGEALRRINE-GAAMIRTK  141 (287)
T ss_pred             CCc--HHHHHHHHHHHcCCCEEccCCCHHHHHHHHHC-CCCEEecc
Confidence            544  4667766666 588888899999999999996 99999987

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=96.36  E-value=0.051  Score=52.70  Aligned_cols=118  Identities=22%  Similarity=0.327  Sum_probs=88.4

Q ss_pred             HHHHHHHcCceEEEEeccCCCCC--CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cC--CH
Q 018446          202 IARSYEKGGAACLSILTDEKYFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PD  274 (355)
Q Consensus       202 iA~~Ye~~GAaaISVLTD~~fF~--GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL--~~  274 (355)
                      .++.-++.|+.+|.+..+....+  ...+.++.+|+. +++||+.|. +.++.....+..+|||+|.+.-.   .+  ..
T Consensus       134 ~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~-~~~pvivK~-v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~  211 (299)
T cd02809         134 LLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQ-WKGPLILKG-ILTPEDALRAVDAGADGIVVSNHGGRQLDGAP  211 (299)
T ss_pred             HHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHh-cCCCEEEee-cCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCc
Confidence            34444667999999877754311  246899999985 789999997 47888889999999999987432   11  23


Q ss_pred             HHHHHHHHHHHHcC--CcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCCCc
Q 018446          275 LDIRYMTKICKLLG--LTALVE--VHDEREMDRVLGIEGIELIGINNRNLET  322 (355)
Q Consensus       275 ~~L~~L~~~A~~LG--LeaLVE--VH~~eELerAl~l~ga~iIGINNRdL~T  322 (355)
                      ..+..+.++++.++  +..+..  |+|..++.+++.+ ||+.|+|-..-|..
T Consensus       212 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~l-GAd~V~ig~~~l~~  262 (299)
T cd02809         212 ATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALAL-GADAVLIGRPFLYG  262 (299)
T ss_pred             CHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEcHHHHHH
Confidence            35666777777774  766664  8999999999997 99999998766544

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=96.29  E-value=0.025  Score=53.90  Aligned_cols=144  Identities=23%  Similarity=0.302  Sum_probs=103.2

Q ss_pred             eEEeEeee--cCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---ccc-----c
Q 018446          178 ALIAEVKK--ASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKE-----F  247 (355)
Q Consensus       178 aVIAEvKR--aSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rKD-----F  247 (355)
                      ++|.-+..  -+|    +...+=...+|++-+++||.+|=..        +.+|++.+|+. |++||+   -+|     .
T Consensus        16 glIVSCQal~~~p----l~~~~iv~~mA~Aa~~gGAvgiR~~--------gv~dIkai~~~-v~vPIIGIiKrd~~~s~v   82 (229)
T COG3010          16 GLIVSCQALPGEP----LDSPEIVAAMALAAEQGGAVGIRIE--------GVEDIKAIRAV-VDVPIIGIIKRDYPDSPV   82 (229)
T ss_pred             CeEEEeecCCCCC----CcchhHHHHHHHHHHhCCcceEeec--------chhhHHHHHhh-CCCCeEEEEecCCCCCCc
Confidence            36666642  233    3333445688999999999998654        79999999985 999965   343     3


Q ss_pred             ccCHH--HHHHHHHcCCcchHHHHhcC--CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCC---
Q 018446          248 IVDAW--QIYYARTKGADAVLLIAAVL--PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNL---  320 (355)
Q Consensus       248 IIdpy--QI~eAr~~GADAVLLIaaiL--~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL---  320 (355)
                      -|.|+  .|.+-...|||-|-+=+..=  ++.++++|++..+..|.-..-.+.|.+|-..|.++ |+++||=.=.-.   
T Consensus        83 ~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~-G~D~IGTTLsGYT~~  161 (229)
T COG3010          83 RITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKL-GFDIIGTTLSGYTGY  161 (229)
T ss_pred             eecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHc-CCcEEecccccccCC
Confidence            44554  47777788998776544332  34489999999999999999999999999999998 999998543333   


Q ss_pred             --CccccChhhHHhhhc
Q 018446          321 --ETFEVDNSNTKKLLE  335 (355)
Q Consensus       321 --~TfevDl~~t~~L~~  335 (355)
                        +.-+-|++--.+|.+
T Consensus       162 ~~~~~~pDf~lvk~l~~  178 (229)
T COG3010         162 TEKPTEPDFQLVKQLSD  178 (229)
T ss_pred             CCCCCCCcHHHHHHHHh
Confidence              333445555555544

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=96.26  E-value=0.043  Score=55.67  Aligned_cols=124  Identities=17%  Similarity=0.214  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHHcCceEEEEe--c-cCCCC--CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh-
Q 018446          197 FDPVEIARSYEKGGAACLSIL--T-DEKYF--KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA-  270 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVL--T-D~~fF--~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa-  270 (355)
                      .+..++++..+++||++|.|-  | +..|+  .|.+.+|.++++. .++||+..| +.+.-...++...|||+|+ +.. 
T Consensus       142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~-~~IPVI~G~-V~t~e~A~~~~~aGaDgV~-~G~g  218 (369)
T TIGR01304       142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE-LDVPVIAGG-VNDYTTALHLMRTGAAGVI-VGPG  218 (369)
T ss_pred             cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH-CCCCEEEeC-CCCHHHHHHHHHcCCCEEE-ECCC
Confidence            378899999999999999985  3 34443  3578999998885 799999977 7888888889999999998 331 


Q ss_pred             -------cCC--HHHHHHHHHH-------HHHcC---CcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          271 -------VLP--DLDIRYMTKI-------CKLLG---LTALVE--VHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       271 -------iL~--~~~L~~L~~~-------A~~LG---LeaLVE--VH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                             .|+  -.+...+.+.       ..+.|   ...+.+  +++-.++-+|+.+ ||+-+++-.+=+.|-|
T Consensus       219 g~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAl-GAdaV~iGt~~a~a~E  292 (369)
T TIGR01304       219 GANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIAC-GADAVVLGSPLARAAE  292 (369)
T ss_pred             CCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHc-CCCEeeeHHHHHhhhc
Confidence                   221  1122233332       23345   566654  8999999999997 9999998766555444

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.24  E-value=0.029  Score=57.70  Aligned_cols=119  Identities=11%  Similarity=0.128  Sum_probs=89.3

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH--------H
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI--------A  269 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI--------a  269 (355)
                      +-.+-++...++|+..|.|-+-..+-.+-.+.++.+|+...++||+.++ +.++-+...+..+|||+|-.=        .
T Consensus       224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~-v~t~~~a~~l~~aGad~i~vg~g~G~~~~t  302 (450)
T TIGR01302       224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGN-VATAEQAKALIDAGADGLRVGIGPGSICTT  302 (450)
T ss_pred             hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEe-CCCHHHHHHHHHhCCCEEEECCCCCcCCcc
Confidence            4456778888999999999774333345677888888753589999965 679999999999999998421        1


Q ss_pred             hcC---C-H--HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          270 AVL---P-D--LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       270 aiL---~-~--~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNR  318 (355)
                      ..+   + +  ..+.+..++|+..|+..+.  =+++..|+-+|+.+ ||+.+++-..
T Consensus       303 ~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~-GA~~V~~G~~  358 (450)
T TIGR01302       303 RIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAA-GADAVMLGSL  358 (450)
T ss_pred             ceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEECch
Confidence            111   1 1  2345566778889998888  69999999999997 9998877543

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=96.19  E-value=0.067  Score=53.59  Aligned_cols=98  Identities=16%  Similarity=0.230  Sum_probs=74.1

Q ss_pred             CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh-------cCC-HHHHHHHHHHHHHcC--CcEEE-
Q 018446          225 GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA-------VLP-DLDIRYMTKICKLLG--LTALV-  293 (355)
Q Consensus       225 GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa-------iL~-~~~L~~L~~~A~~LG--LeaLV-  293 (355)
                      +++++|+.+|+. .++||+-|.. .++.-...+..+|+|+|.+.-.       ..+ -.-|.+..+..+.+|  +..++ 
T Consensus       200 ~~~~~i~~l~~~-~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~  277 (344)
T cd02922         200 LTWDDIKWLRKH-TKLPIVLKGV-QTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD  277 (344)
T ss_pred             CCHHHHHHHHHh-cCCcEEEEcC-CCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence            788999999985 8999999965 6899999999999999886431       111 223445555444554  55555 


Q ss_pred             -EeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          294 -EVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       294 -EVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                       =|.+-.++-+++.+ ||+.++|-..-|..+..
T Consensus       278 GGIr~G~Dv~kalaL-GA~aV~iG~~~l~~l~~  309 (344)
T cd02922         278 GGVRRGTDVLKALCL-GAKAVGLGRPFLYALSA  309 (344)
T ss_pred             CCCCCHHHHHHHHHc-CCCEEEECHHHHHHHhh
Confidence             37899999999998 99999998777766654

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=96.18  E-value=0.069  Score=46.52  Aligned_cols=107  Identities=24%  Similarity=0.247  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHH----HHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~e----dL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      +..+..+...++|+.+| .+.++.   ++..    .+..+++.  ...++++..|    .  +..+..+|||+|-+-...
T Consensus        13 ~~~~~l~~l~~~g~~~i-~lr~~~---~~~~~~~~~~~~i~~~~~~~~~~l~~~~----~--~~~a~~~g~~~vh~~~~~   82 (196)
T cd00564          13 DLLEVVEAALKGGVTLV-QLREKD---LSARELLELARALRELCRKYGVPLIIND----R--VDLALAVGADGVHLGQDD   82 (196)
T ss_pred             hHHHHHHHHHhcCCCEE-EEeCCC---CCHHHHHHHHHHHHHHHHHhCCeEEEeC----h--HHHHHHcCCCEEecCccc
Confidence            56677778888899888 444432   3433    23344332  1356777655    2  445889999988666544


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCC
Q 018446          272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRN  319 (355)
Q Consensus       272 L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRd  319 (355)
                      +....+    +.....++.+-+.+||.+|+.++... |++.|.+....
T Consensus        83 ~~~~~~----~~~~~~~~~~g~~~~t~~~~~~~~~~-g~d~i~~~~~~  125 (196)
T cd00564          83 LPVAEA----RALLGPDLIIGVSTHSLEEALRAEEL-GADYVGFGPVF  125 (196)
T ss_pred             CCHHHH----HHHcCCCCEEEeeCCCHHHHHHHhhc-CCCEEEECCcc
Confidence            433232    33445688888899999999999986 99999987663

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.13  E-value=0.086  Score=54.21  Aligned_cols=144  Identities=17%  Similarity=0.166  Sum_probs=97.9

Q ss_pred             ccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCC
Q 018446          161 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC  240 (355)
Q Consensus       161 rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~l  240 (355)
                      +.|-.+.+..   .+++.|.|-+-   +       ..+-.+.++...++||+.|.|-+-..+-..-.+.++.+|+...++
T Consensus       129 ~~~~~a~~d~---~~~l~v~aavg---~-------~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~  195 (404)
T PRK06843        129 EDFPNACKDL---NNKLRVGAAVS---I-------DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNL  195 (404)
T ss_pred             hhcchhhhhh---hcCeEEEEEEe---C-------CHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCC
Confidence            3344455543   26677877772   1       112347788888999999998554432222235677887753478


Q ss_pred             CeeccccccCHHHHHHHHHcCCcchHHHHhc----------C---CHHHHH---HHHHHHHHcCCcEEEE--eCCHHHHH
Q 018446          241 PLLCKEFIVDAWQIYYARTKGADAVLLIAAV----------L---PDLDIR---YMTKICKLLGLTALVE--VHDEREMD  302 (355)
Q Consensus       241 PVLrKDFIIdpyQI~eAr~~GADAVLLIaai----------L---~~~~L~---~L~~~A~~LGLeaLVE--VH~~eELe  302 (355)
                      +|+.+| +.+.-+...+..+|||+|-.  .+          +   +..++.   .+.++++..++..+.|  +++..++-
T Consensus       196 ~vi~g~-V~T~e~a~~l~~aGaD~I~v--G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~  272 (404)
T PRK06843        196 DLIAGN-IVTKEAALDLISVGADCLKV--GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVV  272 (404)
T ss_pred             cEEEEe-cCCHHHHHHHHHcCCCEEEE--CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH
Confidence            888887 56888888999999999862  22          1   112444   4456667789999998  89999999


Q ss_pred             HHhccCCCeEEEeeCCCCC
Q 018446          303 RVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       303 rAl~l~ga~iIGINNRdL~  321 (355)
                      +|+.+ ||+-+.|-+.=-.
T Consensus       273 KALal-GA~aVmvGs~~ag  290 (404)
T PRK06843        273 KAIAA-GADSVMIGNLFAG  290 (404)
T ss_pred             HHHHc-CCCEEEEcceeee
Confidence            99997 9988777655433

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=96.10  E-value=0.1  Score=48.56  Aligned_cols=136  Identities=21%  Similarity=0.196  Sum_probs=89.0

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccC-CC-CCC-CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          197 FDPVEIARSYEKGGAACLSILTDE-KY-FKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~-~f-F~G-S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      .||.++|+.|++.|+..|.+.-=. .. =+| .++.+..+++. +++||..-==|-+.-++......|||+|.+-.+++.
T Consensus        27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~-~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~  105 (243)
T cd04731          27 GDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE-VFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE  105 (243)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence            499999999999999966654211 11 111 35667888875 789998877777888888888899999987777765


Q ss_pred             HHHHHHHHHHHHHcCCcEEE-E-----------------------eCCHHHHHHHhccCCCeEEEeeCCCCC--ccccCh
Q 018446          274 DLDIRYMTKICKLLGLTALV-E-----------------------VHDEREMDRVLGIEGIELIGINNRNLE--TFEVDN  327 (355)
Q Consensus       274 ~~~L~~L~~~A~~LGLeaLV-E-----------------------VH~~eELerAl~l~ga~iIGINNRdL~--TfevDl  327 (355)
                      +.  .-+.++++.+|-+.++ -                       ....+.++.+.+. |++.|-+.+++-.  .-..|.
T Consensus       106 ~p--~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~-G~d~i~v~~i~~~g~~~g~~~  182 (243)
T cd04731         106 NP--ELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEEL-GAGEILLTSMDRDGTKKGYDL  182 (243)
T ss_pred             Ch--HHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHC-CCCEEEEeccCCCCCCCCCCH
Confidence            32  3355566666654222 1                       1223344555564 8998888776532  123466


Q ss_pred             hhHHhhhcc
Q 018446          328 SNTKKLLEG  336 (355)
Q Consensus       328 ~~t~~L~~~  336 (355)
                      +...++...
T Consensus       183 ~~i~~i~~~  191 (243)
T cd04731         183 ELIRAVSSA  191 (243)
T ss_pred             HHHHHHHhh
Confidence            666666543

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=95.92  E-value=0.071  Score=52.62  Aligned_cols=132  Identities=20%  Similarity=0.312  Sum_probs=88.6

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccC----------CCCCCCHHHHHHHHhcCCCCCeeccc-
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDE----------KYFKGSFENLEAVRSAGVKCPLLCKE-  246 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~----------~fF~GS~edL~~VR~a~v~lPVLrKD-  246 (355)
                      .+|+.+--.++     . .+++.++++..+..+|.|+-+-..+          +-|.+-++.|+.+++. +++||..|. 
T Consensus       114 p~~~Nl~~~~~-----~-~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~-~~vPVivK~~  186 (326)
T cd02811         114 PLIANLGAVQL-----N-GYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKA-LSVPVIVKEV  186 (326)
T ss_pred             eEEeecCcccc-----C-CCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHh-cCCCEEEEec
Confidence            57776642222     1 3578888888888888988886532          1244445788999985 899999994 


Q ss_pred             -cccCHHHHHHHHHcCCcchHHHH----------------------hcC---CHHHHHHHHHHHHHc-CCcEEE--EeCC
Q 018446          247 -FIVDAWQIYYARTKGADAVLLIA----------------------AVL---PDLDIRYMTKICKLL-GLTALV--EVHD  297 (355)
Q Consensus       247 -FIIdpyQI~eAr~~GADAVLLIa----------------------aiL---~~~~L~~L~~~A~~L-GLeaLV--EVH~  297 (355)
                       |.....-......+|+|+|.+--                      ..+   .-.....+.+..... ++..+.  -++|
T Consensus       187 g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~  266 (326)
T cd02811         187 GFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRN  266 (326)
T ss_pred             CCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCC
Confidence             45666667777789999988411                      000   001233444444444 554444  4799


Q ss_pred             HHHHHHHhccCCCeEEEeeC
Q 018446          298 EREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       298 ~eELerAl~l~ga~iIGINN  317 (355)
                      ..++.+++.+ ||+.+||-.
T Consensus       267 ~~dv~kal~l-GAd~V~i~~  285 (326)
T cd02811         267 GLDIAKALAL-GADLVGMAG  285 (326)
T ss_pred             HHHHHHHHHh-CCCEEEEcH
Confidence            9999999997 999999976

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=95.88  E-value=0.2  Score=46.45  Aligned_cols=136  Identities=24%  Similarity=0.295  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCC-CCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEK-YFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~-fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      -||.++|+.|.++|+..|-+. |.. ...|.   .+.+..+++. +++|+.--==|-+.-++..+..+|||.|.+=...+
T Consensus        32 ~~~~e~a~~~~~~G~~~l~i~-dl~~~~~~~~~~~~~i~~i~~~-~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~  109 (241)
T PRK13585         32 GDPVEVAKRWVDAGAETLHLV-DLDGAFEGERKNAEAIEKIIEA-VGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV  109 (241)
T ss_pred             CCHHHHHHHHHHcCCCEEEEE-echhhhcCCcccHHHHHHHHHH-cCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence            389999999999999999555 544 44454   4555555553 67887763333456778888899999998877776


Q ss_pred             CHHHHHHHHHHHHHcCCcEE---EEeC---------------CHHHHHHHhccCCCeEEEeeCCCCC--ccccChhhHHh
Q 018446          273 PDLDIRYMTKICKLLGLTAL---VEVH---------------DEREMDRVLGIEGIELIGINNRNLE--TFEVDNSNTKK  332 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaL---VEVH---------------~~eELerAl~l~ga~iIGINNRdL~--TfevDl~~t~~  332 (355)
                      .+  ...+.++++.+|=+.+   +.++               +..|+-+.+...|+.-|-+.+++-.  .-..|++...+
T Consensus       110 ~~--~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~  187 (241)
T PRK13585        110 EN--PEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKE  187 (241)
T ss_pred             hC--hHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHH
Confidence            43  3345666777664444   2222               4555544443348887778777432  23356777777


Q ss_pred             hhcc
Q 018446          333 LLEG  336 (355)
Q Consensus       333 L~~~  336 (355)
                      +.+.
T Consensus       188 i~~~  191 (241)
T PRK13585        188 LVDS  191 (241)
T ss_pred             HHHh
Confidence            7654

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase

Probab=95.66  E-value=0.041  Score=54.94  Aligned_cols=55  Identities=18%  Similarity=0.267  Sum_probs=50.2

Q ss_pred             hcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          270 AVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       270 aiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      .-|+.++++.|.++|+++||..+.++.|.+.++.+.+. |++++=|-.+|+..+..
T Consensus        71 ~~l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~-~v~~~KIaS~~~~n~pL  125 (329)
T TIGR03569        71 LELSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDL-GVPRFKIPSGEITNAPL  125 (329)
T ss_pred             hCCCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-CCCEEEECcccccCHHH
Confidence            34888999999999999999999999999999999887 89999999999988653

This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=95.58  E-value=0.15  Score=48.78  Aligned_cols=132  Identities=23%  Similarity=0.343  Sum_probs=85.7

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC-------CCCCCCHHH----HHHHHhcCCCCCeecccccc---CHHHHHH-HHHcCC
Q 018446          198 DPVEIARSYEKGGAACLSILTDE-------KYFKGSFEN----LEAVRSAGVKCPLLCKEFIV---DAWQIYY-ARTKGA  262 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~-------~fF~GS~ed----L~~VR~a~v~lPVLrKDFII---dpyQI~e-Ar~~GA  262 (355)
                      +..+.|+..+++|+++|-+..--       ..|+++.+.    ++.+|++ +++||..| +-.   +..++.+ +..+||
T Consensus       103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vK-l~~~~~~~~~~a~~~~~~G~  180 (296)
T cd04740         103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVK-LTPNVTDIVEIARAAEEAGA  180 (296)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEE-eCCCchhHHHHHHHHHHcCC
Confidence            56677888888899999885321       245566654    5566775 79999998 222   2335554 667999


Q ss_pred             cchHHHHh--------------------cCC-----HHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEe
Q 018446          263 DAVLLIAA--------------------VLP-----DLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       263 DAVLLIaa--------------------iL~-----~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGI  315 (355)
                      |+|.++-.                    -++     +-.+..+.++.+.+++..+.  -|+|.+++.+++.+ ||+.|+|
T Consensus       181 d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~-GAd~V~i  259 (296)
T cd04740         181 DGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMA-GASAVQV  259 (296)
T ss_pred             CEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHc-CCCEEEE
Confidence            99876411                    111     11344555555666765554  47999999999986 9999999


Q ss_pred             eCCCCCccccChhhHHhhhcc
Q 018446          316 NNRNLETFEVDNSNTKKLLEG  336 (355)
Q Consensus       316 NNRdL~TfevDl~~t~~L~~~  336 (355)
                      -.--+.    |+....++...
T Consensus       260 gra~l~----~p~~~~~i~~~  276 (296)
T cd04740         260 GTANFV----DPEAFKEIIEG  276 (296)
T ss_pred             chhhhc----ChHHHHHHHHH
Confidence            754333    55556665543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=95.56  E-value=0.081  Score=49.62  Aligned_cols=120  Identities=16%  Similarity=0.227  Sum_probs=90.6

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA  257 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA  257 (355)
                      .||+=+.-.+|.        +..+++++..++|..+|=|-...   .+.++-++.+++. ..==++-==-|+++-|...|
T Consensus         9 ~liaVlr~~~~e--------~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~-~~~~~vGAGTVl~~~~a~~a   76 (204)
T TIGR01182         9 KIVPVIRIDDVD--------DALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKE-VPDALIGAGTVLNPEQLRQA   76 (204)
T ss_pred             CEEEEEecCCHH--------HHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHH-CCCCEEEEEeCCCHHHHHHH
Confidence            366666444443        56789999999999999886644   4778888888863 21112223346899999999


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEee
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGIN  316 (355)
                      ..+||+-++      ++.--.+++++|++.|+-.+-=+.|..|+..|++. |+++|=+-
T Consensus        77 ~~aGA~Fiv------sP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~-Ga~~vKlF  128 (204)
T TIGR01182        77 VDAGAQFIV------SPGLTPELAKHAQDHGIPIIPGVATPSEIMLALEL-GITALKLF  128 (204)
T ss_pred             HHcCCCEEE------CCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHC-CCCEEEEC
Confidence            999999872      23233478999999999999999999999999997 99887554

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=95.55  E-value=0.018  Score=51.50  Aligned_cols=107  Identities=21%  Similarity=0.183  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCH-HHHH---HHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSF-ENLE---AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~-edL~---~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~  274 (355)
                      ..+..+.-.++|++++ .|.++..-...+ +.+.   .+++. ...|++..|+      +..|..+|||+|-|-..-++.
T Consensus        15 ~~~~~~~~~~~g~~~v-~lR~~~~~~~~~~~~~~~l~~~~~~-~~~~l~i~~~------~~la~~~g~~GvHl~~~~~~~   86 (196)
T TIGR00693        15 LLNRVEAALKGGVTLV-QLRDKGSNTRERLALAEKLQELCRR-YGVPFIVNDR------VDLALALGADGVHLGQDDLPA   86 (196)
T ss_pred             HHHHHHHHHhcCCCEE-EEecCCCCHHHHHHHHHHHHHHHHH-hCCeEEEECH------HHHHHHcCCCEEecCcccCCH
Confidence            4455555556789888 666543211111 1222   22222 3678887774      356889999999776555554


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          275 LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       275 ~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR  318 (355)
                      ...+.++    ..+.-.-+++||.+|+.+|.+. |++.|++-+-
T Consensus        87 ~~~r~~~----~~~~~ig~s~h~~~e~~~a~~~-g~dyi~~~~v  125 (196)
T TIGR00693        87 SEARALL----GPDKIIGVSTHNLEELAEAEAE-GADYIGFGPI  125 (196)
T ss_pred             HHHHHhc----CCCCEEEEeCCCHHHHHHHhHc-CCCEEEECCc
Confidence            4433332    3456777999999999999986 9999997554

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>TIGR03586 PseI pseudaminic acid synthase

Probab=95.52  E-value=0.045  Score=54.65  Aligned_cols=53  Identities=19%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                      -|+.++..+|.++|+++||+.+.++.|.+.++.+..+ |++++=|-.+|+..+.
T Consensus        73 el~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~-~v~~~KI~S~~~~n~~  125 (327)
T TIGR03586        73 HTPWEWHKELFERAKELGLTIFSSPFDETAVDFLESL-DVPAYKIASFEITDLP  125 (327)
T ss_pred             hCCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHc-CCCEEEECCccccCHH
Confidence            4788889999999999999999999999999999887 8999999999998765

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.51  E-value=0.18  Score=51.13  Aligned_cols=127  Identities=13%  Similarity=0.122  Sum_probs=93.6

Q ss_pred             CCHHHHHHHHHHcCceEEEEec---cCCCCCC--CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh-
Q 018446          197 FDPVEIARSYEKGGAACLSILT---DEKYFKG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA-  270 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~G--S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa-  270 (355)
                      .+..++++..+++|+++|.|--   |..|.++  +.+++.++.+. .++||+..+ +.++-...++..+|||+|..=.. 
T Consensus       141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIaG~-V~t~e~A~~l~~aGAD~V~VG~G~  218 (368)
T PRK08649        141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIVGG-CVTYTTALHLMRTGAAGVLVGIGP  218 (368)
T ss_pred             cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEEeC-CCCHHHHHHHHHcCCCEEEECCCC
Confidence            3677999999999999999942   6666553  58888888775 799999977 78888888899999999943100 


Q ss_pred             --------cCC--HHHHHHHHHHH---HH----c---CCcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCCCccccC
Q 018446          271 --------VLP--DLDIRYMTKIC---KL----L---GLTALVE--VHDEREMDRVLGIEGIELIGINNRNLETFEVD  326 (355)
Q Consensus       271 --------iL~--~~~L~~L~~~A---~~----L---GLeaLVE--VH~~eELerAl~l~ga~iIGINNRdL~TfevD  326 (355)
                              .++  -.++..+.+.+   +.    +   ++..+..  +++..++-+|+.+ ||+-+.+-.+=+.|-|-.
T Consensus       219 Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlal-GAd~Vm~Gs~fa~t~Esp  295 (368)
T PRK08649        219 GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIAC-GADAVMLGSPLARAAEAP  295 (368)
T ss_pred             CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHc-CCCeecccchhcccccCC
Confidence                    121  12444444443   22    2   4666665  8999999999997 999999988877776644

>PLN02535 glycolate oxidase

Probab=95.50  E-value=0.07  Score=54.10  Aligned_cols=96  Identities=16%  Similarity=0.284  Sum_probs=75.4

Q ss_pred             CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcC--CHHHHHHHHHHHHHc--CCcEEEE--eC
Q 018446          226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVL--PDLDIRYMTKICKLL--GLTALVE--VH  296 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL--~~~~L~~L~~~A~~L--GLeaLVE--VH  296 (355)
                      ++++++.+|+. .++||+.|+. +++.....|..+|+|+|.+.-   ..+  +...+..|.++...+  .+..++.  |+
T Consensus       211 tW~~i~~lr~~-~~~PvivKgV-~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr  288 (364)
T PLN02535        211 SWKDIEWLRSI-TNLPILIKGV-LTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVR  288 (364)
T ss_pred             CHHHHHHHHhc-cCCCEEEecC-CCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCC
Confidence            58999999995 8999999998 889999999999999996531   011  122355566666555  4777765  89


Q ss_pred             CHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          297 DEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       297 ~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                      +-.++-+||.+ ||+.++|-.--|..+.
T Consensus       289 ~g~Dv~KALal-GA~aV~vGr~~l~~l~  315 (364)
T PLN02535        289 RGTDVFKALAL-GAQAVLVGRPVIYGLA  315 (364)
T ss_pred             CHHHHHHHHHc-CCCEEEECHHHHhhhh
Confidence            99999999998 9999999888777654

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=95.49  E-value=0.14  Score=50.61  Aligned_cols=119  Identities=14%  Similarity=0.190  Sum_probs=85.6

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH------
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI------  268 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI------  268 (355)
                      +-.+.++...++|+.+|-|-+-   ++.+   .+.++.+|++..++||.. -.+.++.+...+..+|||+|..=      
T Consensus        94 ~~~~~~~~l~eagv~~I~vd~~---~G~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg~g~G~~  169 (325)
T cd00381          94 DDKERAEALVEAGVDVIVIDSA---HGHSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVGIGPGSI  169 (325)
T ss_pred             hHHHHHHHHHhcCCCEEEEECC---CCCcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEECCCCCcC
Confidence            3457788888899999887652   2222   566777887533488887 67799999999999999998741      


Q ss_pred             --Hhc-----CCH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446          269 --AAV-----LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       269 --aai-----L~~-~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~  321 (355)
                        ...     .+. ..+.+..+.++..++..+.  -+.+..++.+|+.+ ||+.+++-.+=+.
T Consensus       170 ~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~-GA~~VmiGt~fa~  231 (325)
T cd00381         170 CTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAA-GADAVMLGSLLAG  231 (325)
T ss_pred             cccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHc-CCCEEEecchhcc
Confidence              010     011 2345566677778898888  79999999999997 9999888544433

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=95.38  E-value=0.054  Score=52.89  Aligned_cols=78  Identities=26%  Similarity=0.226  Sum_probs=65.0

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      -||+ +|+..++.|++|+-.|--|---+=   +..+|+.+++. .++||++-==|=.|-++++|..+|||+||+--+|..
T Consensus       146 ~D~v-~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIak  223 (267)
T CHL00162        146 ADPM-LAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQ  223 (267)
T ss_pred             CCHH-HHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeec
Confidence            3776 999999999999999887752221   36889999985 789999999999999999999999999999887774


Q ss_pred             HHH
Q 018446          274 DLD  276 (355)
Q Consensus       274 ~~~  276 (355)
                      -++
T Consensus       224 A~d  226 (267)
T CHL00162        224 AKN  226 (267)
T ss_pred             CCC
Confidence            433

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=95.20  E-value=0.48  Score=44.59  Aligned_cols=136  Identities=20%  Similarity=0.187  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHHHHcCceEEEEeccCC---CCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          196 DFDPVEIARSYEKGGAACLSILTDEK---YFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~---fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      .-||.++|+.|++.||..|.|.-=..   .=+=+++.++.+++. +++||..-==|-+.-++.++...|||+|.+=...+
T Consensus        29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~-~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l  107 (253)
T PRK02083         29 AGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ-VFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAV  107 (253)
T ss_pred             cCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh-CCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence            45999999999999999988753221   122345677777775 78998887777789999999999999997766666


Q ss_pred             CHHHHHHHHHHHHHcCCcEE---EEe----------------------CCHHHHHHHhccCCCeEEEeeCCCC--Ccccc
Q 018446          273 PDLDIRYMTKICKLLGLTAL---VEV----------------------HDEREMDRVLGIEGIELIGINNRNL--ETFEV  325 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaL---VEV----------------------H~~eELerAl~l~ga~iIGINNRdL--~Tfev  325 (355)
                      .+  ...+.++++.+|=+.+   +-+                      ...+.++++..+ |++-|-+++.+-  ..-..
T Consensus       108 ~~--p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-g~~~ii~~~i~~~g~~~g~  184 (253)
T PRK02083        108 AN--PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEEL-GAGEILLTSMDRDGTKNGY  184 (253)
T ss_pred             hC--cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHc-CCCEEEEcCCcCCCCCCCc
Confidence            53  3445566777662211   111                      113344566665 888777766332  22334


Q ss_pred             ChhhHHhhhc
Q 018446          326 DNSNTKKLLE  335 (355)
Q Consensus       326 Dl~~t~~L~~  335 (355)
                      |++...++..
T Consensus       185 d~~~i~~~~~  194 (253)
T PRK02083        185 DLELTRAVSD  194 (253)
T ss_pred             CHHHHHHHHh
Confidence            6665566654

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=95.16  E-value=0.061  Score=51.31  Aligned_cols=74  Identities=19%  Similarity=0.204  Sum_probs=61.8

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCC----CHHHHHHHHhcCCC-CCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G----S~edL~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      .+..++|+..+++||++|.|  |. .+.|    +++.+..++++ ++ +||+-.==|.+.-+..+...+|||+|.+=-++
T Consensus       148 ~~~~~~a~~l~~aGad~i~V--d~-~~~g~~~a~~~~I~~i~~~-~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~  223 (231)
T TIGR00736       148 LDELIDALNLVDDGFDGIHV--DA-MYPGKPYADMDLLKILSEE-FNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAI  223 (231)
T ss_pred             chHHHHHHHHHHcCCCEEEE--ee-CCCCCchhhHHHHHHHHHh-cCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhh
Confidence            46789999999999999999  44 4455    48889999986 74 99999999999999999999999999876565


Q ss_pred             CCH
Q 018446          272 LPD  274 (355)
Q Consensus       272 L~~  274 (355)
                      |..
T Consensus       224 l~~  226 (231)
T TIGR00736       224 LKG  226 (231)
T ss_pred             ccC
Confidence            543

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=95.14  E-value=0.2  Score=52.76  Aligned_cols=127  Identities=11%  Similarity=0.112  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH-------
Q 018446          196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI-------  268 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI-------  268 (355)
                      ..|..+-+++..++|++.|.|-+-..+-...++.++.+|+...+++|+++|. .+.-+-..|..+|||+|..=       
T Consensus       246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v-~t~e~a~~a~~aGaD~i~vg~g~G~~~  324 (505)
T PLN02274        246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV-VTMYQAQNLIQAGVDGLRVGMGSGSIC  324 (505)
T ss_pred             CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC-CCHHHHHHHHHcCcCEEEECCCCCccc
Confidence            3466789999999999999998743232333478999987534689999986 67888999999999998541       


Q ss_pred             -Hhc---C---CHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          269 -AAV---L---PDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       269 -aai---L---~~~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                       -..   .   ....+..+.++++..++.++.+  +++..++.+||.+ ||+-+.+-.+=..|-+
T Consensus       325 ~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~-GA~~V~vGs~~~~t~E  388 (505)
T PLN02274        325 TTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTL-GASTVMMGSFLAGTTE  388 (505)
T ss_pred             cCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEchhhccccc
Confidence             000   0   0124555778888889998888  8999999999997 9998887766554443

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=95.13  E-value=0.18  Score=45.73  Aligned_cols=125  Identities=20%  Similarity=0.212  Sum_probs=80.6

Q ss_pred             cCCCCCCCCCC-CCHHHHHHHHHHcCceEEEEec-cCCCCCC---CHHHHHHHHhcCCC----CCeeccccccCHHHHHH
Q 018446          186 ASPSRGILRED-FDPVEIARSYEKGGAACLSILT-DEKYFKG---SFENLEAVRSAGVK----CPLLCKEFIVDAWQIYY  256 (355)
Q Consensus       186 aSPSkG~I~~~-~Dp~~iA~~Ye~~GAaaISVLT-D~~fF~G---S~edL~~VR~a~v~----lPVLrKDFIIdpyQI~e  256 (355)
                      -|||  +..-| ....+.++...++|+.+|=+-. |..|.+.   .++.++.+++. ++    ++++..|   ....+..
T Consensus         6 ~~~s--~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~-~~~~~~v~l~v~d---~~~~i~~   79 (220)
T PRK05581          6 IAPS--ILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKV-TKLPLDVHLMVEN---PDRYVPD   79 (220)
T ss_pred             EEcc--hhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhc-CCCcEEEEeeeCC---HHHHHHH
Confidence            4565  23333 2345678888999999998832 3344333   57888888864 33    2333343   2235677


Q ss_pred             HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe--CCHHHHHHHhccCCCeEEEeeCCC
Q 018446          257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV--HDEREMDRVLGIEGIELIGINNRN  319 (355)
Q Consensus       257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV--H~~eELerAl~l~ga~iIGINNRd  319 (355)
                      +..+|+|.|.+....  .+.....++.++..|+...+-+  |+..|..+.+. .+++.|++-..+
T Consensus        80 ~~~~g~d~v~vh~~~--~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~-~~~d~i~~~~~~  141 (220)
T PRK05581         80 FAKAGADIITFHVEA--SEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVL-DLLDLVLLMSVN  141 (220)
T ss_pred             HHHcCCCEEEEeecc--chhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHH-hhCCEEEEEEEC
Confidence            789999998777654  3466777899999999988888  45555555443 246766665443

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=94.99  E-value=0.11  Score=49.90  Aligned_cols=91  Identities=25%  Similarity=0.209  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHcCceEEEEec-------c-----------CCCCCCC------HHHHHHHHhcCCCCCeeccccccCHHH
Q 018446          198 DPVEIARSYEKGGAACLSILT-------D-----------EKYFKGS------FENLEAVRSAGVKCPLLCKEFIVDAWQ  253 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT-------D-----------~~fF~GS------~edL~~VR~a~v~lPVLrKDFIIdpyQ  253 (355)
                      |..++|+..+++|+++|.|-.       |           ...+.|.      ++.+..++++ +++||+.--=|.++-+
T Consensus       170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~-~~ipvi~~GGI~s~~d  248 (300)
T TIGR01037       170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKM-VDIPIIGVGGITSFED  248 (300)
T ss_pred             hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhc-CCCCEEEECCCCCHHH
Confidence            678999999999999998741       1           1122332      4677888885 8999999999999999


Q ss_pred             HHHHHHcCCcchHHHHhcCCHHH-----HHHHHHHHHHcCC
Q 018446          254 IYYARTKGADAVLLIAAVLPDLD-----IRYMTKICKLLGL  289 (355)
Q Consensus       254 I~eAr~~GADAVLLIaaiL~~~~-----L~~L~~~A~~LGL  289 (355)
                      +.+....|||+|.+--++|.+-.     .++|.++....|.
T Consensus       249 a~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~  289 (300)
T TIGR01037       249 ALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGF  289 (300)
T ss_pred             HHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCC
Confidence            99999999999998777764422     2334444445554

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=94.88  E-value=0.064  Score=50.67  Aligned_cols=116  Identities=16%  Similarity=0.284  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHcCceEEEEe-------ccCCCCC--------------CCHHHHHHHHhcCCCCCeec--c-ccccC---H
Q 018446          199 PVEIARSYEKGGAACLSIL-------TDEKYFK--------------GSFENLEAVRSAGVKCPLLC--K-EFIVD---A  251 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVL-------TD~~fF~--------------GS~edL~~VR~a~v~lPVLr--K-DFIId---p  251 (355)
                      -.+.++.++++||++|=+-       .|..+-+              -.++.+..+|+. +++|+.-  + +-+..   +
T Consensus        16 ~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-~~~pv~lm~y~n~~~~~G~~   94 (242)
T cd04724          16 TLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-NTIPIVLMGYYNPILQYGLE   94 (242)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCEEEEEecCHHHHhCHH
Confidence            3467778888888887764       3333433              457788888875 6889542  2 22111   4


Q ss_pred             HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhc-cCCC-eEEEeeC
Q 018446          252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLG-IEGI-ELIGINN  317 (355)
Q Consensus       252 yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~-l~ga-~iIGINN  317 (355)
                      .-+.++..+|||+|++.  =|+.+++.++++.|+++||++.+=+.   +.+.++..++ ..|. -++++|.
T Consensus        95 ~fi~~~~~aG~~giiip--Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g  163 (242)
T cd04724          95 RFLRDAKEAGVDGLIIP--DLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTG  163 (242)
T ss_pred             HHHHHHHHCCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCC
Confidence            45888999999998774  23557899999999999999876443   3566777776 2232 3445554

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=94.84  E-value=0.27  Score=46.70  Aligned_cols=131  Identities=27%  Similarity=0.365  Sum_probs=84.5

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCC------CH----HHHHHHHhcCCCCCeecccc
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKG------SF----ENLEAVRSAGVKCPLLCKEF  247 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G------S~----edL~~VR~a~v~lPVLrKDF  247 (355)
                      .+|+-+-..+|.        +..+.|+..++.||++|-+..--....+      +.    +-++.+|++ +++||..|=-
T Consensus       100 pvi~si~g~~~~--------~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~  170 (289)
T cd02810         100 PLIASVGGSSKE--------DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLS  170 (289)
T ss_pred             eEEEEeccCCHH--------HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeC
Confidence            467666444442        4567788888889999998764333322      22    346777875 7899998822


Q ss_pred             -ccC---HHHH-HHHHHcCCcchHHHHhcC--------------------C-----HHHHHHHHHHHHHc--CCcEEE--
Q 018446          248 -IVD---AWQI-YYARTKGADAVLLIAAVL--------------------P-----DLDIRYMTKICKLL--GLTALV--  293 (355)
Q Consensus       248 -IId---pyQI-~eAr~~GADAVLLIaaiL--------------------~-----~~~L~~L~~~A~~L--GLeaLV--  293 (355)
                       .++   ..++ ..+..+|||+|.++-...                    +     +-.+..+.++...+  ++..+.  
T Consensus       171 ~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~G  250 (289)
T cd02810         171 PYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVG  250 (289)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEEC
Confidence             223   2333 345678999999864321                    1     11345555666666  555553  


Q ss_pred             EeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          294 EVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       294 EVH~~eELerAl~l~ga~iIGINNR  318 (355)
                      -|+|.+++.+++.+ ||+.|+|-..
T Consensus       251 GI~~~~da~~~l~~-GAd~V~vg~a  274 (289)
T cd02810         251 GIDSGEDVLEMLMA-GASAVQVATA  274 (289)
T ss_pred             CCCCHHHHHHHHHc-CccHheEcHH
Confidence            48999999999986 9999988543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=94.82  E-value=0.21  Score=47.29  Aligned_cols=95  Identities=28%  Similarity=0.312  Sum_probs=76.1

Q ss_pred             CCCCHHHHHHHHHHcCceEEEE--eccCCCCCC-CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHh
Q 018446          195 EDFDPVEIARSYEKGGAACLSI--LTDEKYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAA  270 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISV--LTD~~fF~G-S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaa  270 (355)
                      ...++.++++.+++.|++.|.|  .+-..+.+| .++.+..+++. +++||+.--=|-++-.+.++...| ||+|++-.+
T Consensus       153 ~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a  231 (254)
T TIGR00735       153 TGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASV  231 (254)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHH
Confidence            3678999999999999999998  444333333 36778899886 899999999899999999999988 999877666


Q ss_pred             cCC-HHHHHHHHHHHHHcCCc
Q 018446          271 VLP-DLDIRYMTKICKLLGLT  290 (355)
Q Consensus       271 iL~-~~~L~~L~~~A~~LGLe  290 (355)
                      +.. .-.+.++.+++++.|..
T Consensus       232 ~~~~~~~~~~~~~~~~~~gi~  252 (254)
T TIGR00735       232 FHYREITIGEVKEYLAERGIP  252 (254)
T ss_pred             HhCCCCCHHHHHHHHHHCCCc
Confidence            553 44688888888888864

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=94.58  E-value=0.14  Score=49.64  Aligned_cols=73  Identities=27%  Similarity=0.265  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCC---CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~---GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      ||+ +|+..++.|++|+-.|--|---+   -+...|+.+++. .++||+-.==|=.|-+..+|-++||||||+..++-
T Consensus       133 D~v-~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~-~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA  208 (247)
T PF05690_consen  133 DPV-LAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIA  208 (247)
T ss_dssp             -HH-HHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHH-GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred             CHH-HHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence            776 99999999999999998775211   136888999875 79999987777789999999999999999966654

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=94.57  E-value=0.23  Score=49.70  Aligned_cols=136  Identities=19%  Similarity=0.271  Sum_probs=91.8

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccC----------CCCCCCHHHHHHHHhcCCCCCeecccc
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDE----------KYFKGSFENLEAVRSAGVKCPLLCKEF  247 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~----------~fF~GS~edL~~VR~a~v~lPVLrKDF  247 (355)
                      .+|+-+---.+.      ..++.++.+..+..+|.|+.+-..+          .-|.+-++.++.+|+. +++||..|-.
T Consensus       122 p~~aNl~~~~~~------~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~-~~vPVivK~~  194 (352)
T PRK05437        122 LLFANLGAVQLY------GYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSA-LPVPVIVKEV  194 (352)
T ss_pred             eEEeecCccccC------CCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHh-hCCCEEEEeC
Confidence            577777332221      4578888888888889998887522          1245555789999985 8999999954


Q ss_pred             --ccCHHHHHHHHHcCCcchHHHHh------------cC-----------CHHHHHHHHHHHHHc-CCcEEE--EeCCHH
Q 018446          248 --IVDAWQIYYARTKGADAVLLIAA------------VL-----------PDLDIRYMTKICKLL-GLTALV--EVHDER  299 (355)
Q Consensus       248 --IIdpyQI~eAr~~GADAVLLIaa------------iL-----------~~~~L~~L~~~A~~L-GLeaLV--EVH~~e  299 (355)
                        .....-......+|+|+|.+--.            ..           .-.....|.+..+.+ ++..+.  -|+|..
T Consensus       195 g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~  274 (352)
T PRK05437        195 GFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGL  274 (352)
T ss_pred             CCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHH
Confidence              46666666677789999887221            00           001233444455543 554444  489999


Q ss_pred             HHHHHhccCCCeEEEeeCCCCC
Q 018446          300 EMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       300 ELerAl~l~ga~iIGINNRdL~  321 (355)
                      ++.+++.+ ||+.++|-.--|.
T Consensus       275 dv~k~l~~-GAd~v~ig~~~l~  295 (352)
T PRK05437        275 DIAKALAL-GADAVGMAGPFLK  295 (352)
T ss_pred             HHHHHHHc-CCCEEEEhHHHHH
Confidence            99999997 9999999775444

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=94.53  E-value=0.14  Score=49.68  Aligned_cols=75  Identities=25%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHcCceEEEEe-----------------------ccCCCCCCC------HHHHHHHHhcCC--CCCeeccc
Q 018446          198 DPVEIARSYEKGGAACLSIL-----------------------TDEKYFKGS------FENLEAVRSAGV--KCPLLCKE  246 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL-----------------------TD~~fF~GS------~edL~~VR~a~v--~lPVLrKD  246 (355)
                      +..++|+..+++||++|++-                       |....|.|.      ++.+..++++ +  ++||+--=
T Consensus       181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~-~~~~ipIig~G  259 (299)
T cd02940         181 DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARA-PEPGLPISGIG  259 (299)
T ss_pred             hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHh-cCCCCcEEEEC
Confidence            67899999999999999841                       112234442      7888999886 7  89999998


Q ss_pred             cccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          247 FIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       247 FIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      =|.+..++++...+|||+|.+--+++-
T Consensus       260 GI~~~~da~~~l~aGA~~V~i~ta~~~  286 (299)
T cd02940         260 GIESWEDAAEFLLLGASVVQVCTAVMN  286 (299)
T ss_pred             CCCCHHHHHHHHHcCCChheEceeecc
Confidence            999999999999999999998766654

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=94.48  E-value=0.17  Score=46.59  Aligned_cols=77  Identities=17%  Similarity=0.181  Sum_probs=64.2

Q ss_pred             CCCHHHHHHHHHHcCceEEEEe---ccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          196 DFDPVEIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVL---TD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      ..+|.++++.|.+.||+.|-+.   -+...++-+++.+..+++. +++||+.-==|-+.-++.++...|||+|++=-+++
T Consensus       144 ~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~  222 (230)
T TIGR00007       144 EVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALY  222 (230)
T ss_pred             CCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence            4799999999999999987755   4555666678899999985 89999988888889999999999999988755554


Q ss_pred             C
Q 018446          273 P  273 (355)
Q Consensus       273 ~  273 (355)
                      .
T Consensus       223 ~  223 (230)
T TIGR00007       223 E  223 (230)
T ss_pred             c
Confidence            3

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=94.46  E-value=0.26  Score=46.03  Aligned_cols=119  Identities=21%  Similarity=0.289  Sum_probs=84.8

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA  257 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA  257 (355)
                      .||+=+.-.++.        +..++++++.++|..+|-|--...   +.++-++.+++. ..==++===-+++.-|...|
T Consensus         9 ~iiaVir~~~~~--------~a~~~~~al~~gGi~~iEiT~~t~---~a~~~I~~l~~~-~p~~~vGAGTV~~~e~a~~a   76 (196)
T PF01081_consen    9 KIIAVIRGDDPE--------DAVPIAEALIEGGIRAIEITLRTP---NALEAIEALRKE-FPDLLVGAGTVLTAEQAEAA   76 (196)
T ss_dssp             SEEEEETTSSGG--------GHHHHHHHHHHTT--EEEEETTST---THHHHHHHHHHH-HTTSEEEEES--SHHHHHHH
T ss_pred             CEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEecCCc---cHHHHHHHHHHH-CCCCeeEEEeccCHHHHHHH
Confidence            366666544443        678999999999999999876543   567888888764 21112222335799999999


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      ..+||+-++--  .++    .+++++|+++|+-.+==|-|..|+..|+++ |++++=+
T Consensus        77 ~~aGA~FivSP--~~~----~~v~~~~~~~~i~~iPG~~TptEi~~A~~~-G~~~vK~  127 (196)
T PF01081_consen   77 IAAGAQFIVSP--GFD----PEVIEYAREYGIPYIPGVMTPTEIMQALEA-GADIVKL  127 (196)
T ss_dssp             HHHT-SEEEES--S------HHHHHHHHHHTSEEEEEESSHHHHHHHHHT-T-SEEEE
T ss_pred             HHcCCCEEECC--CCC----HHHHHHHHHcCCcccCCcCCHHHHHHHHHC-CCCEEEE
Confidence            99999975432  233    578999999999999999999999999997 9988765

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=94.40  E-value=0.33  Score=46.72  Aligned_cols=144  Identities=21%  Similarity=0.327  Sum_probs=88.7

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcC-ceEEEEec-----cC--CCCCCCH----HHHHHHHhcCCCCCeecc
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGG-AACLSILT-----DE--KYFKGSF----ENLEAVRSAGVKCPLLCK  245 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~G-AaaISVLT-----D~--~fF~GS~----edL~~VR~a~v~lPVLrK  245 (355)
                      .+|+-+-..+|        -+..+.|+..+++| +++|=+..     ..  ..+..+.    +.++.||++ +++||..|
T Consensus        93 p~i~si~g~~~--------~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~-~~~pv~vK  163 (301)
T PRK07259         93 PIIANVAGSTE--------EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV-VKVPVIVK  163 (301)
T ss_pred             cEEEEeccCCH--------HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEE
Confidence            47777743333        14567777888888 99997733     21  1233333    445667775 79999888


Q ss_pred             ---ccccCHHHHHH-HHHcCCcchHHHHhc--------------------CC-----HHHHHHHHHHHHHcCCcEEE--E
Q 018446          246 ---EFIVDAWQIYY-ARTKGADAVLLIAAV--------------------LP-----DLDIRYMTKICKLLGLTALV--E  294 (355)
Q Consensus       246 ---DFIIdpyQI~e-Ar~~GADAVLLIaai--------------------L~-----~~~L~~L~~~A~~LGLeaLV--E  294 (355)
                         ++- +..++.+ +..+|||+|.++-..                    ++     +-.+..+.++.+.+++..+.  -
T Consensus       164 l~~~~~-~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GG  242 (301)
T PRK07259        164 LTPNVT-DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGG  242 (301)
T ss_pred             cCCCch-hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECC
Confidence               332 4455554 667899998663111                    11     11345555566666765544  4


Q ss_pred             eCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcc
Q 018446          295 VHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEG  336 (355)
Q Consensus       295 VH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~  336 (355)
                      |+|.+++++++.. ||+.|+|----+.    |+....++...
T Consensus       243 I~~~~da~~~l~a-GAd~V~igr~ll~----~P~~~~~i~~~  279 (301)
T PRK07259        243 ISSAEDAIEFIMA-GASAVQVGTANFY----DPYAFPKIIEG  279 (301)
T ss_pred             CCCHHHHHHHHHc-CCCceeEcHHHhc----CcHHHHHHHHH
Confidence            7999999999985 9999998543332    45555555443

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=94.35  E-value=0.21  Score=49.52  Aligned_cols=117  Identities=15%  Similarity=0.242  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHcCceEEEEecc--C--------CCCCCCHHHHHHHHhcCCCCCeecc--ccccCHHHHHHHHHcCCcchH
Q 018446          199 PVEIARSYEKGGAACLSILTD--E--------KYFKGSFENLEAVRSAGVKCPLLCK--EFIVDAWQIYYARTKGADAVL  266 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD--~--------~fF~GS~edL~~VR~a~v~lPVLrK--DFIIdpyQI~eAr~~GADAVL  266 (355)
                      +.++.+..+..+|.|+-+-..  +        ..|.+-++.++.+|+. +++||..|  -|.....-+.....+|+|+|-
T Consensus       130 ~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~-~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~  208 (333)
T TIGR02151       130 PEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQ-LSVPVIVKEVGFGISKEVAKLLADAGVSAID  208 (333)
T ss_pred             HHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence            555666555556666666542  1        1244445889999985 89999999  445677677777889999998


Q ss_pred             HHHhc------------C-----------CHHHHHHHHHHHH-HcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeC
Q 018446          267 LIAAV------------L-----------PDLDIRYMTKICK-LLGLTALV--EVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       267 LIaai------------L-----------~~~~L~~L~~~A~-~LGLeaLV--EVH~~eELerAl~l~ga~iIGINN  317 (355)
                      +--+-            .           .-.....+.+... ..++..+.  -++|..++.+++.+ ||+.+|+-.
T Consensus       209 Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLal-GAd~V~igr  284 (333)
T TIGR02151       209 VAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIAL-GADAVGMAR  284 (333)
T ss_pred             ECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHh-CCCeehhhH
Confidence            85421            0           0001123333332 23444333  47899999999997 999999943

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=94.33  E-value=1.4  Score=40.75  Aligned_cols=136  Identities=22%  Similarity=0.185  Sum_probs=88.3

Q ss_pred             CCCHHHHHHHHHHcCceEEEEeccCCCC----CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446          196 DFDPVEIARSYEKGGAACLSILTDEKYF----KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF----~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      ..||.++|+.|.+.|+..|-| ||-.-=    +=+++.++.+++. +++||.---=|=+.-++.+....|||.|.+-.+.
T Consensus        29 ~~dp~~~a~~~~~~g~~~i~i-~dl~~~~~~~~~n~~~~~~i~~~-~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~  106 (232)
T TIGR03572        29 IGDPVNAARIYNAKGADELIV-LDIDASKRGREPLFELISNLAEE-CFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAA  106 (232)
T ss_pred             CCCHHHHHHHHHHcCCCEEEE-EeCCCcccCCCCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence            449999999999999987655 443322    1246677888875 8899877666666778888888999999998888


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEE-EeC-----------------------C-HHHHHHHhccCCCeEEEeeCCCCC--ccc
Q 018446          272 LPDLDIRYMTKICKLLGLTALV-EVH-----------------------D-EREMDRVLGIEGIELIGINNRNLE--TFE  324 (355)
Q Consensus       272 L~~~~L~~L~~~A~~LGLeaLV-EVH-----------------------~-~eELerAl~l~ga~iIGINNRdL~--Tfe  324 (355)
                      |.+.+  .+.++.+..|=+.++ -+.                       + .+.++++.+. |++-|-|.+++-.  .-.
T Consensus       107 l~~~~--~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-G~d~i~i~~i~~~g~~~g  183 (232)
T TIGR03572       107 LENPD--LIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQL-GAGEILLNSIDRDGTMKG  183 (232)
T ss_pred             hcCHH--HHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHc-CCCEEEEeCCCccCCcCC
Confidence            87533  333444544433111 111                       1 2333444454 8888888885442  334


Q ss_pred             cChhhHHhhhcc
Q 018446          325 VDNSNTKKLLEG  336 (355)
Q Consensus       325 vDl~~t~~L~~~  336 (355)
                      .|++...++.+.
T Consensus       184 ~~~~~~~~i~~~  195 (232)
T TIGR03572       184 YDLELIKTVSDA  195 (232)
T ss_pred             CCHHHHHHHHhh
Confidence            677777777654

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.32  E-value=0.3  Score=45.85  Aligned_cols=108  Identities=16%  Similarity=0.182  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI  277 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L  277 (355)
                      +..+++++..++|..+|=|--..   .+.++-++.+++. ..=-++===-++++-|..+|..+||+-++      ++.--
T Consensus        17 ~a~~ia~al~~gGi~~iEit~~t---p~a~~~I~~l~~~-~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv------SP~~~   86 (201)
T PRK06015         17 HAVPLARALAAGGLPAIEITLRT---PAALDAIRAVAAE-VEEAIVGAGTILNAKQFEDAAKAGSRFIV------SPGTT   86 (201)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCC---ccHHHHHHHHHHH-CCCCEEeeEeCcCHHHHHHHHHcCCCEEE------CCCCC
Confidence            46689999999999999886543   3677888888764 21112223336899999999999999754      33333


Q ss_pred             HHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEee
Q 018446          278 RYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGIN  316 (355)
                      .+++++|++.|+-.+==+-|..|+..|.++ |+++|=+.
T Consensus        87 ~~vi~~a~~~~i~~iPG~~TptEi~~A~~~-Ga~~vK~F  124 (201)
T PRK06015         87 QELLAAANDSDVPLLPGAATPSEVMALREE-GYTVLKFF  124 (201)
T ss_pred             HHHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEEC
Confidence            478999999999999999999999999997 99887654

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=94.30  E-value=0.21  Score=50.70  Aligned_cols=114  Identities=18%  Similarity=0.281  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccc---cccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE---FIVDAWQIYYARTKGADAVLLIAAVLPDL  275 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKD---FIIdpyQI~eAr~~GADAVLLIaaiL~~~  275 (355)
                      ..++++...++|+..|-+-+ +..+....+.++.+++. ...|.+.-|   ..+....+..|..+|||+|.+... -++.
T Consensus        18 ~~~~~~~~~~~Gv~~ie~g~-p~~~~~~~~~i~~l~~~-~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g~-~~~~   94 (430)
T PRK07028         18 AVEIAKEAVAGGADWIEAGT-PLIKSEGMNAIRTLRKN-FPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILGL-ADDS   94 (430)
T ss_pred             HHHHHHHHHhcCCcEEEeCC-HHHHHhhHHHHHHHHHH-CCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEecC-CChH
Confidence            44566666678999986532 12122236667777664 334455444   223467999999999999876522 1233


Q ss_pred             HHHHHHHHHHHcCCcEEEEe---CC-HHHHHHHhccCCCeEEEee
Q 018446          276 DIRYMTKICKLLGLTALVEV---HD-EREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       276 ~L~~L~~~A~~LGLeaLVEV---H~-~eELerAl~l~ga~iIGIN  316 (355)
                      .+.++++.|+++|+..++.+   ++ .+.+..+.++ |++.|++.
T Consensus        95 ~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~-GaD~I~~~  138 (430)
T PRK07028         95 TIEDAVRAARKYGVRLMADLINVPDPVKRAVELEEL-GVDYINVH  138 (430)
T ss_pred             HHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc-CCCEEEEE
Confidence            56789999999999999853   34 3446667775 89999876

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=94.26  E-value=1.3  Score=41.90  Aligned_cols=137  Identities=23%  Similarity=0.244  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHHHHcCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          196 DFDPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      ..||.++|+.|++.||..|.|.==..-..|.   ++.+..++++ +++||..-==|-+.-++.+....|||.|.+=.+.+
T Consensus        29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~  107 (254)
T TIGR00735        29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-VFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV  107 (254)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence            4599999999999999998875222222233   4555667775 78999988888889999999999999998866666


Q ss_pred             CHHHHHHHHHHHHHcCCc-EEEEeC-------------------------CHHHH-HHHhccCCCeEEEeeCCCCCc--c
Q 018446          273 PDLDIRYMTKICKLLGLT-ALVEVH-------------------------DEREM-DRVLGIEGIELIGINNRNLET--F  323 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLe-aLVEVH-------------------------~~eEL-erAl~l~ga~iIGINNRdL~T--f  323 (355)
                      .+  ...+.++++.+|=+ ..+-+.                         +..++ ++..+. |++.|-++.++-.-  -
T Consensus       108 ~~--p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~-G~~~iivt~i~~~g~~~  184 (254)
T TIGR00735       108 KN--PELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKL-GAGEILLTSMDKDGTKS  184 (254)
T ss_pred             hC--hHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHc-CCCEEEEeCcCcccCCC
Confidence            53  23344556666622 222221                         12233 444444 88888886654422  3


Q ss_pred             ccChhhHHhhhcc
Q 018446          324 EVDNSNTKKLLEG  336 (355)
Q Consensus       324 evDl~~t~~L~~~  336 (355)
                      ..|++...++...
T Consensus       185 g~~~~~~~~i~~~  197 (254)
T TIGR00735       185 GYDLELTKAVSEA  197 (254)
T ss_pred             CCCHHHHHHHHHh
Confidence            4566666676554

>PLN02334 ribulose-phosphate 3-epimerase

Probab=94.22  E-value=0.39  Score=44.72  Aligned_cols=124  Identities=19%  Similarity=0.218  Sum_probs=83.4

Q ss_pred             CCCCCCCCCC-CCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCCCCCeeccccccC--HHHHHHHHH
Q 018446          187 SPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLLCKEFIVD--AWQIYYART  259 (355)
Q Consensus       187 SPSkG~I~~~-~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v~lPVLrKDFIId--pyQI~eAr~  259 (355)
                      +||  .++.+ .+..+..+...++|+..|=+---...|..++    +.++.+|+. ++.|+ -=+|++.  ..-+..+..
T Consensus        11 ~~s--~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~-~~~~~-~vhlmv~~p~d~~~~~~~   86 (229)
T PLN02334         11 APS--ILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH-TDAPL-DCHLMVTNPEDYVPDFAK   86 (229)
T ss_pred             Eee--hhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhc-CCCcE-EEEeccCCHHHHHHHHHH
Confidence            465  34444 4566778888899999987754444444332    578888875 66664 3456663  344778899


Q ss_pred             cCCcchHHHHhc-CCHHHHHHHHHHHHHcCCcEEEEeC--CHHH-HHHHhccCCCeEEEe
Q 018446          260 KGADAVLLIAAV-LPDLDIRYMTKICKLLGLTALVEVH--DERE-MDRVLGIEGIELIGI  315 (355)
Q Consensus       260 ~GADAVLLIaai-L~~~~L~~L~~~A~~LGLeaLVEVH--~~eE-LerAl~l~ga~iIGI  315 (355)
                      +|||.|.+.+.. -. +.....++.++..|+.+=+-+|  |..| ++..+...|++.|++
T Consensus        87 ~gad~v~vH~~q~~~-d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~  145 (229)
T PLN02334         87 AGASIFTFHIEQAST-IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLV  145 (229)
T ss_pred             cCCCEEEEeeccccc-hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEE
Confidence            999999777662 33 3667888999999999999998  5444 444444211888855

>cd04732 HisA HisA

Probab=94.17  E-value=0.19  Score=46.03  Aligned_cols=79  Identities=16%  Similarity=0.210  Sum_probs=62.7

Q ss_pred             CCCCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446          195 EDFDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      ...++.++++.|++.||+.|-+..   +..+-+-+++.+..+++. +++||+.-==|-++-++.++...|||+|++--++
T Consensus       144 ~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~  222 (234)
T cd04732         144 SEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA-TGIPVIASGGVSSLDDIKALKELGVAGVIVGKAL  222 (234)
T ss_pred             cCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-cCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHH
Confidence            356899999999999999998763   223333357888899885 8999998777777888999999999999887666


Q ss_pred             CCH
Q 018446          272 LPD  274 (355)
Q Consensus       272 L~~  274 (355)
                      +..
T Consensus       223 ~~~  225 (234)
T cd04732         223 YEG  225 (234)
T ss_pred             HcC
Confidence            654

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=94.16  E-value=0.17  Score=49.06  Aligned_cols=74  Identities=28%  Similarity=0.269  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      ||. .|+..++.|++++-.|-++---+-   ..++++.+++. .++||++-==|-.|-|+++|..+|||+||+--+|..
T Consensus       133 d~~-~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~  209 (248)
T cd04728         133 DPV-LAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK  209 (248)
T ss_pred             CHH-HHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence            554 899999999999965445443111   37889999985 789999999999999999999999999999888887

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=94.12  E-value=0.22  Score=45.73  Aligned_cols=78  Identities=15%  Similarity=0.220  Sum_probs=65.6

Q ss_pred             CCCHHHHHHHHHHcCceEEEEe---ccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhc
Q 018446          196 DFDPVEIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAV  271 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVL---TD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaai  271 (355)
                      +.++.++++.|++.||..|-+.   -|..+++-+++.+..+++. +++||+.-==|-++-++.+....| ||+|++=-++
T Consensus       145 ~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~  223 (233)
T PRK00748        145 GVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAA-VPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRAL  223 (233)
T ss_pred             CCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHH
Confidence            5789999999999999987666   3455677789999999985 889999998889999999999999 9999886666


Q ss_pred             CCH
Q 018446          272 LPD  274 (355)
Q Consensus       272 L~~  274 (355)
                      +..
T Consensus       224 ~~~  226 (233)
T PRK00748        224 YEG  226 (233)
T ss_pred             HcC
Confidence            543

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=94.10  E-value=0.43  Score=46.29  Aligned_cols=117  Identities=26%  Similarity=0.321  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCC---CC-------CHH----HHHHHHhcCCCCCeecc---ccccCHHHHHH-HHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYF---KG-------SFE----NLEAVRSAGVKCPLLCK---EFIVDAWQIYY-ART  259 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF---~G-------S~e----dL~~VR~a~v~lPVLrK---DFIIdpyQI~e-Ar~  259 (355)
                      |..+.|+..++.||++|-++.--...   .|       +.+    .++.+|+. +++||..|   |+- +..++.+ +..
T Consensus       114 ~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~~~~~-~~~~~a~~~~~  191 (299)
T cd02940         114 DWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLTPNIT-DIREIARAAKE  191 (299)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECCCCch-hHHHHHHHHHH
Confidence            45667777777899999986653222   11       223    34455664 78999988   221 2235655 678


Q ss_pred             cCCcchHHHHhcCC------------------------------HHHHHHHHHHHHHc--CCcEEE--EeCCHHHHHHHh
Q 018446          260 KGADAVLLIAAVLP------------------------------DLDIRYMTKICKLL--GLTALV--EVHDEREMDRVL  305 (355)
Q Consensus       260 ~GADAVLLIaaiL~------------------------------~~~L~~L~~~A~~L--GLeaLV--EVH~~eELerAl  305 (355)
                      +|||+|.++-.+..                              +-.++.+.++++.+  .+..+.  -|+|.+++.+.+
T Consensus       192 ~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l  271 (299)
T cd02940         192 GGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFL  271 (299)
T ss_pred             cCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHH
Confidence            89999986532211                              11266667777777  444433  589999999999


Q ss_pred             ccCCCeEEEeeC
Q 018446          306 GIEGIELIGINN  317 (355)
Q Consensus       306 ~l~ga~iIGINN  317 (355)
                      .+ ||+.|.|--
T Consensus       272 ~a-GA~~V~i~t  282 (299)
T cd02940         272 LL-GASVVQVCT  282 (299)
T ss_pred             Hc-CCChheEce
Confidence            85 999988743

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=94.10  E-value=0.68  Score=47.13  Aligned_cols=90  Identities=13%  Similarity=0.180  Sum_probs=67.6

Q ss_pred             CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cC--CHHHHHHHHHHHHHcC--CcEEE--EeC
Q 018446          226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLLG--LTALV--EVH  296 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL--~~~~L~~L~~~A~~LG--LeaLV--EVH  296 (355)
                      ++++|+.+|+. .++||+-|. |.++--...+..+|+|+|.+--.   -|  .+..+..|.+++...+  ++.++  -|+
T Consensus       216 ~w~~i~~l~~~-~~~PvivKG-v~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr  293 (367)
T TIGR02708       216 SPRDIEEIAGY-SGLPVYVKG-PQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVR  293 (367)
T ss_pred             CHHHHHHHHHh-cCCCEEEeC-CCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcC
Confidence            35899999985 899999997 55788888999999999854221   11  1123455666666665  77776  489


Q ss_pred             CHHHHHHHhccCCCeEEEeeCC
Q 018446          297 DEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       297 ~~eELerAl~l~ga~iIGINNR  318 (355)
                      +..++-+|+.+ ||+.+||-.=
T Consensus       294 ~g~Dv~KaLal-GAd~V~igR~  314 (367)
T TIGR02708       294 RGQHVFKALAS-GADLVALGRP  314 (367)
T ss_pred             CHHHHHHHHHc-CCCEEEEcHH
Confidence            99999999997 9999998654

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=94.08  E-value=0.29  Score=45.36  Aligned_cols=87  Identities=16%  Similarity=0.240  Sum_probs=66.9

Q ss_pred             CCCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          196 DFDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      +.++.++++.|.+.|+..|-+..   |..+-+=+++.++.+++. +++||+.-==|-++-++.+....|||+|++--+++
T Consensus       148 ~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~-~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~  226 (241)
T PRK13585        148 GYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDS-VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALY  226 (241)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHh
Confidence            45899999999999999997642   222322346778999885 89999998888889999999999999999977777


Q ss_pred             CH-HHHHHHHHH
Q 018446          273 PD-LDIRYMTKI  283 (355)
Q Consensus       273 ~~-~~L~~L~~~  283 (355)
                      .. ..+.++..+
T Consensus       227 ~~~~~~~~~~~~  238 (241)
T PRK13585        227 KGKFTLEEAIEA  238 (241)
T ss_pred             cCCcCHHHHHHH
Confidence            54 234444444

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=94.04  E-value=0.21  Score=46.09  Aligned_cols=74  Identities=27%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             CCCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHH-HHHcCCcchHHHHh
Q 018446          196 DFDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY-ARTKGADAVLLIAA  270 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~e-Ar~~GADAVLLIaa  270 (355)
                      ..++.++++.+++.||++|-|..   +...-+-.++.+.++++. +++||+.--=|-++-++.+ ....|||+|.+--+
T Consensus       152 ~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a  229 (232)
T TIGR03572       152 GRDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDA-VSIPVIALGGAGSLDDLVEVALEAGASAVAAASL  229 (232)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehh
Confidence            46799999999999999999877   333333358888999985 8999999988889999999 88899999876433

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=94.00  E-value=0.16  Score=49.34  Aligned_cols=78  Identities=31%  Similarity=0.269  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCC---CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~---GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      -||+ +|+.+++.|++|+-=|.-|---+   -+..+|+.+++. .++||+-.==|=.|-|..+|-++|+||||+..++-.
T Consensus       139 dD~v-~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~-a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~  216 (262)
T COG2022         139 DDPV-LARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEE-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAR  216 (262)
T ss_pred             CCHH-HHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHh-CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhc
Confidence            3777 99999999999988777664211   236899999985 799999888888899999999999999999877765


Q ss_pred             HHH
Q 018446          274 DLD  276 (355)
Q Consensus       274 ~~~  276 (355)
                      -.+
T Consensus       217 A~D  219 (262)
T COG2022         217 AKD  219 (262)
T ss_pred             cCC
Confidence            433

>PRK00208 thiG thiazole synthase; Reviewed

Probab=93.96  E-value=0.2  Score=48.76  Aligned_cols=74  Identities=28%  Similarity=0.249  Sum_probs=60.6

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      ||+ .|+.+++.|+++|-.|-++---+-   ..++++.+++. .++||++-==|-.|-|+++|..+|||+||+--+|..
T Consensus       133 d~~-~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk  209 (250)
T PRK00208        133 DPV-LAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV  209 (250)
T ss_pred             CHH-HHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence            454 899999999999955444432111   36889999985 789999999999999999999999999999888886

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=93.87  E-value=0.42  Score=47.49  Aligned_cols=74  Identities=18%  Similarity=0.159  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC---------------CCCCC------CHHHHHHHHhcCC--CCCeeccccccCHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDE---------------KYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQI  254 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~---------------~fF~G------S~edL~~VR~a~v--~lPVLrKDFIIdpyQI  254 (355)
                      +..++|+..+++||++|.+-.--               ..+.|      +++.+..++++ +  ++||..-==|.++-++
T Consensus       226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~-~~~~ipIig~GGI~s~eda  304 (344)
T PRK05286        226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKE-LGGRLPIIGVGGIDSAEDA  304 (344)
T ss_pred             HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHH-hCCCCCEEEECCCCCHHHH
Confidence            47889999999999999986421               12233      46678888875 6  7999988889999999


Q ss_pred             HHHHHcCCcchHHHHhcC
Q 018446          255 YYARTKGADAVLLIAAVL  272 (355)
Q Consensus       255 ~eAr~~GADAVLLIaaiL  272 (355)
                      .+...+|||+|.+--+++
T Consensus       305 ~e~l~aGAd~V~v~~~~~  322 (344)
T PRK05286        305 YEKIRAGASLVQIYSGLI  322 (344)
T ss_pred             HHHHHcCCCHHHHHHHHH
Confidence            999999999998877765

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=93.84  E-value=0.17  Score=50.94  Aligned_cols=91  Identities=18%  Similarity=0.329  Sum_probs=67.7

Q ss_pred             CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cC--CHHHHHHHHHHHHHcC--CcEEEE--e
Q 018446          225 GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLLG--LTALVE--V  295 (355)
Q Consensus       225 GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL--~~~~L~~L~~~A~~LG--LeaLVE--V  295 (355)
                      .++++|+.+|+. .++||+-|.. +++..+..+..+|+|+|.+--.   -|  ....+..|.+....+|  ++.++-  |
T Consensus       212 ~~w~~i~~~~~~-~~~pvivKgv-~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGi  289 (356)
T PF01070_consen  212 LTWDDIEWIRKQ-WKLPVIVKGV-LSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGI  289 (356)
T ss_dssp             -SHHHHHHHHHH-CSSEEEEEEE--SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS-
T ss_pred             CCHHHHHHHhcc-cCCceEEEec-ccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCC
Confidence            567999999996 9999999999 9999999999999999876310   01  1224556666666666  888886  8


Q ss_pred             CCHHHHHHHhccCCCeEEEeeCC
Q 018446          296 HDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       296 H~~eELerAl~l~ga~iIGINNR  318 (355)
                      .+-.|+-+|+.+ ||+.+||-.-
T Consensus       290 r~g~Dv~kalaL-GA~~v~igr~  311 (356)
T PF01070_consen  290 RRGLDVAKALAL-GADAVGIGRP  311 (356)
T ss_dssp             -SHHHHHHHHHT-T-SEEEESHH
T ss_pred             CCHHHHHHHHHc-CCCeEEEccH
Confidence            999999999998 9999999643

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.83  E-value=0.053  Score=56.58  Aligned_cols=94  Identities=15%  Similarity=0.130  Sum_probs=72.1

Q ss_pred             EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEE-------EeccCCCCCCCHHHHHHHHhc-----CCCCCeeccc
Q 018446          179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLS-------ILTDEKYFKGSFENLEAVRSA-----GVKCPLLCKE  246 (355)
Q Consensus       179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaIS-------VLTD~~fF~GS~edL~~VR~a-----~v~lPVLrKD  246 (355)
                      .|.+||+.-|..-++..+..-.+-|+...++||++|.       ++|-..+-+-..-+|..+.+.     ..++||++--
T Consensus       258 ~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~g  337 (479)
T PRK07807        258 ALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADG  337 (479)
T ss_pred             HHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecC
Confidence            5678888888777777666666788888899999996       567777666555566655421     2478999999


Q ss_pred             cccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          247 FIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       247 FIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      =|-++.++..|.++|||+|.+=-.++
T Consensus       338 gi~~~~~~~~al~~ga~~v~~g~~~a  363 (479)
T PRK07807        338 GVRHPRDVALALAAGASNVMIGSWFA  363 (479)
T ss_pred             CCCCHHHHHHHHHcCCCeeeccHhhc
Confidence            99999999999999999998744443

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=93.74  E-value=0.26  Score=45.32  Aligned_cols=76  Identities=26%  Similarity=0.238  Sum_probs=58.2

Q ss_pred             CHHHHHHHHHHcCceEEEE----eccC--CCCCCCHHHHHHHHhcCCCCCeecccccc-CHHHHHHHHHcCCcchHHHHh
Q 018446          198 DPVEIARSYEKGGAACLSI----LTDE--KYFKGSFENLEAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISV----LTD~--~fF~GS~edL~~VR~a~v~lPVLrKDFII-dpyQI~eAr~~GADAVLLIaa  270 (355)
                      ++.+ ++...+.|++.|.+    .|..  ..+...++.+..+++. +++||+. .+.| ++.++.++..+|||+|++--+
T Consensus       128 t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~-~~iPvia-~GGI~t~~~~~~~l~~GadgV~iGsa  204 (221)
T PRK01130        128 TLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA-VGCPVIA-EGRINTPEQAKKALELGAHAVVVGGA  204 (221)
T ss_pred             CHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh-CCCCEEE-ECCCCCHHHHHHHHHCCCCEEEEchH
Confidence            3444 46777889999865    2222  2355568899999986 7999997 8888 799999999999999998888


Q ss_pred             cCCHHH
Q 018446          271 VLPDLD  276 (355)
Q Consensus       271 iL~~~~  276 (355)
                      +....+
T Consensus       205 i~~~~~  210 (221)
T PRK01130        205 ITRPEE  210 (221)
T ss_pred             hcCCHH
Confidence            776543

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=93.72  E-value=0.53  Score=45.70  Aligned_cols=106  Identities=18%  Similarity=0.196  Sum_probs=73.6

Q ss_pred             HHHHHHHHHcCceE-EEEeccCCCCCCCHHHHHHHHhcCCCCCeecccccc-CHH----HHHHHHHcCCcchHHHHhcCC
Q 018446          200 VEIARSYEKGGAAC-LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV-DAW----QIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       200 ~~iA~~Ye~~GAaa-ISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFII-dpy----QI~eAr~~GADAVLLIaaiL~  273 (355)
                      ..+|+...+.|+.. +|-.+     ..+++++....    .-|+...-|+- +++    ++..+...|+|+|.+-+....
T Consensus        84 ~~la~aa~~~g~~~~~~~~~-----~~~~~~i~~~~----~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~  154 (299)
T cd02809          84 LATARAAAAAGIPFTLSTVS-----TTSLEEVAAAA----PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPV  154 (299)
T ss_pred             HHHHHHHHHcCCCEEecCCC-----cCCHHHHHHhc----CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence            57888888888654 45433     34677665442    35777776664 666    566667889999998777664


Q ss_pred             ------HHHHHHHHHHHHHcCCcEE-EEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          274 ------DLDIRYMTKICKLLGLTAL-VEVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       274 ------~~~L~~L~~~A~~LGLeaL-VEVH~~eELerAl~l~ga~iIGINNR  318 (355)
                            .+.++.   +....++-.+ -+|.+.+++.++.++ |++.|.|.|+
T Consensus       155 ~~~~~~~~~i~~---l~~~~~~pvivK~v~s~~~a~~a~~~-G~d~I~v~~~  202 (299)
T cd02809         155 LGRRLTWDDLAW---LRSQWKGPLILKGILTPEDALRAVDA-GADGIVVSNH  202 (299)
T ss_pred             CCCCCCHHHHHH---HHHhcCCCEEEeecCCHHHHHHHHHC-CCCEEEEcCC
Confidence                  234444   3444565554 458999999999997 9999999884

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=93.70  E-value=0.06  Score=53.80  Aligned_cols=71  Identities=23%  Similarity=0.173  Sum_probs=53.9

Q ss_pred             HHHHHHHHcCceEEEEe--------ccCCCCCC----CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446          201 EIARSYEKGGAACLSIL--------TDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI  268 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVL--------TD~~fF~G----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI  268 (355)
                      +-|+...++||+++=|=        |......|    .+.-+..++++ +++||+.--=|-++.+|..|.++|||+|.+=
T Consensus       152 e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~-~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG  230 (326)
T PRK05458        152 EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-ARKPIIADGGIRTHGDIAKSIRFGATMVMIG  230 (326)
T ss_pred             HHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence            46677778999997433        33332333    24457777775 7899999999999999999999999999887


Q ss_pred             HhcC
Q 018446          269 AAVL  272 (355)
Q Consensus       269 aaiL  272 (355)
                      -.++
T Consensus       231 ~~~~  234 (326)
T PRK05458        231 SLFA  234 (326)
T ss_pred             hhhc
Confidence            6666

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=93.63  E-value=2.1  Score=40.90  Aligned_cols=136  Identities=22%  Similarity=0.224  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      .||.++|+.|.+.||.-|-|.==..-..|   +++.++.+++. +.+||..-.=|=+.-++.+....|||.|.+-.+++.
T Consensus        30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~  108 (258)
T PRK01033         30 GDPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE  108 (258)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence            49999999999999987765321122223   46777788775 789987777666788888888899999998877776


Q ss_pred             HHHHHHHHHHHHHcCCcEE---------------EEeC--------CHHHH-HHHhccCCCeEEEeeCCCCCc--cccCh
Q 018446          274 DLDIRYMTKICKLLGLTAL---------------VEVH--------DEREM-DRVLGIEGIELIGINNRNLET--FEVDN  327 (355)
Q Consensus       274 ~~~L~~L~~~A~~LGLeaL---------------VEVH--------~~eEL-erAl~l~ga~iIGINNRdL~T--fevDl  327 (355)
                      +.+  -+.+.+..+|=+.+               |=++        +..|+ +++.+. |+.-|-+++++-..  -..|+
T Consensus       109 ~~~--~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~-g~~~ii~~~i~~~G~~~G~d~  185 (258)
T PRK01033        109 DPD--LITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEAL-GAGEILLNSIDRDGTMKGYDL  185 (258)
T ss_pred             CHH--HHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHc-CCCEEEEEccCCCCCcCCCCH
Confidence            432  23444554442111               1111        24444 444454 88988899887532  23577


Q ss_pred             hhHHhhhcc
Q 018446          328 SNTKKLLEG  336 (355)
Q Consensus       328 ~~t~~L~~~  336 (355)
                      +...++...
T Consensus       186 ~~i~~~~~~  194 (258)
T PRK01033        186 ELLKSFRNA  194 (258)
T ss_pred             HHHHHHHhh
Confidence            777777654

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=93.61  E-value=0.18  Score=47.62  Aligned_cols=68  Identities=22%  Similarity=0.245  Sum_probs=53.5

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL  267 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL  267 (355)
                      .|..++|+.++++||++|-+-+   .+.|..-|+..+++..+++||+..-=|.++-|..+....|||+|.+
T Consensus       152 ~~~~~la~~l~~aG~d~ihv~~---~~~g~~ad~~~I~~i~~~ipVIgnGgI~s~eda~~~l~~GaD~Vmi  219 (233)
T cd02911         152 VDDEELARLIEKAGADIIHVDA---MDPGNHADLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSV  219 (233)
T ss_pred             cCHHHHHHHHHHhCCCEEEECc---CCCCCCCcHHHHHHhcCCCEEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence            3788999999999999998743   3445334445555432589999999999999999999999999865

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=93.59  E-value=0.57  Score=46.95  Aligned_cols=121  Identities=8%  Similarity=0.090  Sum_probs=84.8

Q ss_pred             CHHHHHHHHHHcCc--eEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH-------
Q 018446          198 DPVEIARSYEKGGA--ACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI-------  268 (355)
Q Consensus       198 Dp~~iA~~Ye~~GA--aaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI-------  268 (355)
                      +-.+-+....++|+  ++|.|-+--.+-..-.+.++.+|+...++||+.+|.. +.-....+..+|||+|..=       
T Consensus        97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~~aGad~i~vg~~~G~~~  175 (326)
T PRK05458         97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-TPEAVRELENAGADATKVGIGPGKVC  175 (326)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHHHcCcCEEEECCCCCccc
Confidence            34467778888854  9998855442222234557778875335899999966 8889999999999996521       


Q ss_pred             -H----hc-CCHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446          269 -A----AV-LPDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINNRNL  320 (355)
Q Consensus       269 -a----ai-L~~~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINNRdL  320 (355)
                       -    .. .++=++..+.+.++.+....+.+  +++..++.+|+.+ ||+.+++-+-=+
T Consensus       176 ~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~-GA~aV~vG~~~~  234 (326)
T PRK05458        176 ITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF-GATMVMIGSLFA  234 (326)
T ss_pred             ccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHh-CCCEEEechhhc
Confidence             1    11 11115556677777777776665  8999999999998 999999875444

>cd00945 Aldolase_Class_I Class I aldolases

Probab=93.53  E-value=0.35  Score=42.06  Aligned_cols=129  Identities=14%  Similarity=0.116  Sum_probs=80.3

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCC--CCCeeccccc--------cCHHHHHHHHHcCCcchHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV--KCPLLCKEFI--------VDAWQIYYARTKGADAVLL  267 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v--~lPVLrKDFI--------IdpyQI~eAr~~GADAVLL  267 (355)
                      +...+++.+.++|+++|.++-         +.++.+++...  ++||+.+=--        ---.++.+|..+|||+|++
T Consensus        14 ~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v   84 (201)
T cd00945          14 DIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV   84 (201)
T ss_pred             HHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence            356778888899999999885         66776665422  4887754211        1236788899999999998


Q ss_pred             HHhc---CC---HHHHHHHHHHHHH--cCCcEEEEeC-----CHHHHHHHh---ccCCCeEEEeeCCCCCccccChhhHH
Q 018446          268 IAAV---LP---DLDIRYMTKICKL--LGLTALVEVH-----DEREMDRVL---GIEGIELIGINNRNLETFEVDNSNTK  331 (355)
Q Consensus       268 Iaai---L~---~~~L~~L~~~A~~--LGLeaLVEVH-----~~eELerAl---~l~ga~iIGINNRdL~TfevDl~~t~  331 (355)
                      ....   .+   +.-++++.+++..  .|+-.++...     +.+++.++.   ...|++.|-...-... =..|+....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~-~~~~~~~~~  163 (201)
T cd00945          85 VINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGG-GGATVEDVK  163 (201)
T ss_pred             eccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC-CCCCHHHHH
Confidence            5333   33   3234445566666  4898888776     677776642   2236666543321110 112677777


Q ss_pred             hhhcc
Q 018446          332 KLLEG  336 (355)
Q Consensus       332 ~L~~~  336 (355)
                      ++.+.
T Consensus       164 ~i~~~  168 (201)
T cd00945         164 LMKEA  168 (201)
T ss_pred             HHHHh
Confidence            77654

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=93.49  E-value=0.97  Score=40.27  Aligned_cols=116  Identities=21%  Similarity=0.269  Sum_probs=74.1

Q ss_pred             CHHHHHHHHHHcCceEEEE-eccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCH--HHHHHHHHcCCcchHHHHhc
Q 018446          198 DPVEIARSYEKGGAACLSI-LTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDA--WQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISV-LTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdp--yQI~eAr~~GADAVLLIaai  271 (355)
                      +..+.++...++|+++|=+ .-|..|...   +++.+..+|+. ++.|+.. ++++..  -.+..+..+|||+|.+....
T Consensus        13 ~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~-~~~~~~v-~l~~~d~~~~~~~~~~~g~dgv~vh~~~   90 (211)
T cd00429          13 NLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKH-TDLPLDV-HLMVENPERYIEAFAKAGADIITFHAEA   90 (211)
T ss_pred             HHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhh-CCCcEEE-EeeeCCHHHHHHHHHHcCCCEEEECccc
Confidence            4445677888999999987 223223222   35788888874 3444322 344442  23888889999998776654


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeCC---HHHHHHHhccCCCeEEEeeCCC
Q 018446          272 LPDLDIRYMTKICKLLGLTALVEVHD---EREMDRVLGIEGIELIGINNRN  319 (355)
Q Consensus       272 L~~~~L~~L~~~A~~LGLeaLVEVH~---~eELerAl~l~ga~iIGINNRd  319 (355)
                      -  ++..+.++.++..|+...+-+|.   .+.++....  +++.|++-...
T Consensus        91 ~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~d~i~~~~~~  137 (211)
T cd00429          91 T--DHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLD--EVDLVLVMSVN  137 (211)
T ss_pred             h--hhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHh--hCCEEEEEEEC
Confidence            3  45667789999999999999974   333444322  46777554443

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=93.42  E-value=0.39  Score=46.25  Aligned_cols=76  Identities=32%  Similarity=0.291  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHcCceEEEEec-------cC-----------CCCCC------CHHHHHHHHhcCCCCCeeccccccCHHH
Q 018446          198 DPVEIARSYEKGGAACLSILT-------DE-----------KYFKG------SFENLEAVRSAGVKCPLLCKEFIVDAWQ  253 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT-------D~-----------~fF~G------S~edL~~VR~a~v~lPVLrKDFIIdpyQ  253 (355)
                      |..++|+..+++||++|.+..       |.           .++.|      +++.+..++++ +++||+.-==|-++.+
T Consensus       170 ~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~-~~ipvi~~GGI~~~~d  248 (301)
T PRK07259        170 DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQA-VDIPIIGMGGISSAED  248 (301)
T ss_pred             hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHh-CCCCEEEECCCCCHHH
Confidence            678999999999999997631       11           11233      47888999986 8999999988999999


Q ss_pred             HHHHHHcCCcchHHHHhcCCH
Q 018446          254 IYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       254 I~eAr~~GADAVLLIaaiL~~  274 (355)
                      +.+...+|||+|-+--+++-+
T Consensus       249 a~~~l~aGAd~V~igr~ll~~  269 (301)
T PRK07259        249 AIEFIMAGASAVQVGTANFYD  269 (301)
T ss_pred             HHHHHHcCCCceeEcHHHhcC
Confidence            999999999999987766653

>PLN02591 tryptophan synthase

Probab=93.39  E-value=0.89  Score=43.85  Aligned_cols=81  Identities=11%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             CCCCHHHHHHHHhcCCCCCee-ccccccCHHH------HHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe
Q 018446          223 FKGSFENLEAVRSAGVKCPLL-CKEFIVDAWQ------IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV  295 (355)
Q Consensus       223 F~GS~edL~~VR~a~v~lPVL-rKDFIIdpyQ------I~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV  295 (355)
                      ...-++.++++|+. .++|++ +--+= .-||      +.+++.+|+|+||+.  =|+.++..++.+.|+++||+.+.=|
T Consensus        63 ~~~~~~~~~~~r~~-~~~p~ilm~Y~N-~i~~~G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~I~lv  138 (250)
T PLN02591         63 LDSVISMLKEVAPQ-LSCPIVLFTYYN-PILKRGIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIELVLLT  138 (250)
T ss_pred             HHHHHHHHHHHhcC-CCCCEEEEeccc-HHHHhHHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeEEEEe
Confidence            34568899999974 788944 32221 1133      788999999997665  3667899999999999999999988


Q ss_pred             -CC--HHHHHHHhcc
Q 018446          296 -HD--EREMDRVLGI  307 (355)
Q Consensus       296 -H~--~eELerAl~l  307 (355)
                       .|  ++.++++...
T Consensus       139 ~Ptt~~~ri~~ia~~  153 (250)
T PLN02591        139 TPTTPTERMKAIAEA  153 (250)
T ss_pred             CCCCCHHHHHHHHHh
Confidence             33  3446776554

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=93.27  E-value=0.53  Score=43.49  Aligned_cols=76  Identities=20%  Similarity=0.172  Sum_probs=58.0

Q ss_pred             HHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccc--cCH----HHHHHHHHcCCcchHHHHhcCCHH
Q 018446          202 IARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI--VDA----WQIYYARTKGADAVLLIAAVLPDL  275 (355)
Q Consensus       202 iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFI--Idp----yQI~eAr~~GADAVLLIaaiL~~~  275 (355)
                      .++.+.+.||+.|-+     +|.++++.++.+.+. +.+||+.--=|  -++    -++.++..+||++|+..-+++..+
T Consensus       148 ~~~~a~~~GaD~Ik~-----~~~~~~~~~~~i~~~-~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~  221 (235)
T cd00958         148 AARIGAELGADIVKT-----KYTGDAESFKEVVEG-CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRP  221 (235)
T ss_pred             HHHHHHHHCCCEEEe-----cCCCCHHHHHHHHhc-CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCC
Confidence            356688899999998     467889999999985 88998664322  233    458999999999999999998766


Q ss_pred             HHHHHHHH
Q 018446          276 DIRYMTKI  283 (355)
Q Consensus       276 ~L~~L~~~  283 (355)
                      +-...++.
T Consensus       222 dp~~~~~~  229 (235)
T cd00958         222 DPVAMLRA  229 (235)
T ss_pred             CHHHHHHH
Confidence            65554443

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=93.19  E-value=0.42  Score=48.23  Aligned_cols=94  Identities=16%  Similarity=0.211  Sum_probs=71.9

Q ss_pred             CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcC--CHHHHHHHHHHHHHcC--CcEEE--EeC
Q 018446          226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVL--PDLDIRYMTKICKLLG--LTALV--EVH  296 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL--~~~~L~~L~~~A~~LG--LeaLV--EVH  296 (355)
                      ++++|..+|+. .++||+.|- |.++--...+..+|||+|.+.-   ..|  .+..+..|.+++..++  +..++  -|.
T Consensus       209 ~~~~l~~lr~~-~~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr  286 (351)
T cd04737         209 SPADIEFIAKI-SGLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVR  286 (351)
T ss_pred             CHHHHHHHHHH-hCCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCC
Confidence            68999999986 899999996 5788888999999999987721   011  1224566667777774  66555  489


Q ss_pred             CHHHHHHHhccCCCeEEEeeCCCCCc
Q 018446          297 DEREMDRVLGIEGIELIGINNRNLET  322 (355)
Q Consensus       297 ~~eELerAl~l~ga~iIGINNRdL~T  322 (355)
                      +-.++-+++.+ ||+.++|-..-|..
T Consensus       287 ~g~Di~kaLal-GA~~V~iGr~~l~~  311 (351)
T cd04737         287 RGEHVFKALAS-GADAVAVGRPVLYG  311 (351)
T ss_pred             CHHHHHHHHHc-CCCEEEECHHHHHH
Confidence            99999999997 99999987654443

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02979 glycolate oxidase

Probab=93.19  E-value=0.39  Score=48.98  Aligned_cols=96  Identities=17%  Similarity=0.261  Sum_probs=74.1

Q ss_pred             CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cCC--HHHHHHHHHHHHHcC--CcEEEE--eC
Q 018446          226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VLP--DLDIRYMTKICKLLG--LTALVE--VH  296 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL~--~~~L~~L~~~A~~LG--LeaLVE--VH  296 (355)
                      +++||..+|+. .++||+-|-. .++.....|..+|+|+|.+--.   .|+  ...+.-|.+++..++  ++.++-  |+
T Consensus       211 tW~dl~wlr~~-~~~PvivKgV-~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr  288 (366)
T PLN02979        211 SWKDVQWLQTI-TKLPILVKGV-LTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVR  288 (366)
T ss_pred             CHHHHHHHHhc-cCCCEEeecC-CCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcC
Confidence            57999999985 8999999998 5899999999999999864211   111  123556666666655  777774  89


Q ss_pred             CHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          297 DEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       297 ~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                      +-.|+-+|+.+ ||+.+||-..=|..+.
T Consensus       289 ~G~Di~KALAL-GAdaV~iGrp~L~~la  315 (366)
T PLN02979        289 RGTDVFKALAL-GASGIFIGRPVVFSLA  315 (366)
T ss_pred             cHHHHHHHHHc-CCCEEEEcHHHHHHHH
Confidence            99999999998 9999999877664443

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=93.15  E-value=0.88  Score=44.43  Aligned_cols=129  Identities=19%  Similarity=0.226  Sum_probs=83.3

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCC------CCCCCH---------HHHHHHHhcCCCCCe
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEK------YFKGSF---------ENLEAVRSAGVKCPL  242 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~------fF~GS~---------edL~~VR~a~v~lPV  242 (355)
                      .+|+-+--.+|.        +..+.|+..+++|+++|-+..--.      -++|+.         +-+..+|++ +++||
T Consensus        64 p~i~ql~g~~~~--------~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-~~~pv  134 (319)
T TIGR00737        64 PISVQLFGSDPD--------TMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-VDIPV  134 (319)
T ss_pred             eEEEEEeCCCHH--------HHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-cCCCE
Confidence            466766444442        344556666778999998853211      134653         457777875 78999


Q ss_pred             ecc------ccccCHHHHHH-HHHcCCcchHHHHhcC-----CHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccC
Q 018446          243 LCK------EFIVDAWQIYY-ARTKGADAVLLIAAVL-----PDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIE  308 (355)
Q Consensus       243 LrK------DFIIdpyQI~e-Ar~~GADAVLLIaaiL-----~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~  308 (355)
                      ..|      +-..+..++.+ ...+|+|+|.+....-     ++.++..+.++.+.+++..+.  -|+|.++++++++..
T Consensus       135 ~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~  214 (319)
T TIGR00737       135 TVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETT  214 (319)
T ss_pred             EEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhh
Confidence            887      21123334443 4567999998754422     233566666777777765554  589999999999545


Q ss_pred             CCeEEEe
Q 018446          309 GIELIGI  315 (355)
Q Consensus       309 ga~iIGI  315 (355)
                      |++.|+|
T Consensus       215 gad~Vmi  221 (319)
T TIGR00737       215 GCDGVMI  221 (319)
T ss_pred             CCCEEEE
Confidence            8998888

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=93.13  E-value=0.35  Score=46.44  Aligned_cols=46  Identities=24%  Similarity=0.278  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhc
Q 018446          224 KGSFENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       224 ~GS~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaai  271 (355)
                      ....+.++.+|+. ++.||.. ||.|+ +-|+.++..+|||+|+.=-++
T Consensus       184 ~~~~~~i~~lr~~-~~~pi~v-gfGI~~~e~~~~~~~~GADgvVvGSai  230 (256)
T TIGR00262       184 SALNELVKRLKAY-SAKPVLV-GFGISKPEQVKQAIDAGADGVIVGSAI  230 (256)
T ss_pred             hhHHHHHHHHHhh-cCCCEEE-eCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence            3447888899986 7899887 99997 999999999999998764444

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK06852 aldolase; Validated

Probab=92.98  E-value=0.61  Score=46.44  Aligned_cols=136  Identities=16%  Similarity=0.145  Sum_probs=85.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc----cccc-----CHHH-----HH
Q 018446          190 RGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK----EFIV-----DAWQ-----IY  255 (355)
Q Consensus       190 kG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK----DFII-----dpyQ-----I~  255 (355)
                      .|++....||..+.+.-.++|++|+..-      .|-+   +..+....++|++-|    .-+.     ||++     +.
T Consensus        52 ~~~~~gl~dp~~~i~~~~~~g~dav~~~------~G~l---~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVe  122 (304)
T PRK06852         52 EGIAKDDADPEHLFRIASKAKIGVFATQ------LGLI---ARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVE  122 (304)
T ss_pred             ccCCcccCCHHHHHHHHHhcCCCEEEeC------HHHH---HhhccccCCCcEEEEECCCCCcCCcccCCccccceecHH
Confidence            3336677899999999999999997643      2333   333222245665544    1111     2332     88


Q ss_pred             HHHHcC------CcchHHHHhcCCHH------HHHHHHHHHHHcCCcEEEEeC-------CHHH-------HHHHhccCC
Q 018446          256 YARTKG------ADAVLLIAAVLPDL------DIRYMTKICKLLGLTALVEVH-------DERE-------MDRVLGIEG  309 (355)
Q Consensus       256 eAr~~G------ADAVLLIaaiL~~~------~L~~L~~~A~~LGLeaLVEVH-------~~eE-------LerAl~l~g  309 (355)
                      +|..+|      ||||-.-+-+-++.      +|.++.+.|+++||-.|+.+.       +..+       ...+.++ |
T Consensus       123 eAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL-G  201 (304)
T PRK06852        123 QVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL-G  201 (304)
T ss_pred             HHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH-c
Confidence            999999      88998877766642      455566889999999988543       2222       2234565 9


Q ss_pred             CeEEEeeCCCCCccccChhhHHhhhcc
Q 018446          310 IELIGINNRNLETFEVDNSNTKKLLEG  336 (355)
Q Consensus       310 a~iIGINNRdL~TfevDl~~t~~L~~~  336 (355)
                      |+||=++=-- ...+-|.+...++...
T Consensus       202 ADIVKv~y~~-~~~~g~~e~f~~vv~~  227 (304)
T PRK06852        202 ADFVKVNYPK-KEGANPAELFKEAVLA  227 (304)
T ss_pred             CCEEEecCCC-cCCCCCHHHHHHHHHh
Confidence            9999987531 1122455666666554

>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac)

Probab=92.80  E-value=0.33  Score=46.62  Aligned_cols=53  Identities=21%  Similarity=0.348  Sum_probs=42.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                      -|+.++..+|.++|+++|++.+.-+.|++.++...++ |++.+=|-..|+..+.
T Consensus        52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~-~~~~~KIaS~dl~n~~  104 (241)
T PF03102_consen   52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEEL-GVPAYKIASGDLTNLP  104 (241)
T ss_dssp             SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHH-T-SEEEE-GGGTT-HH
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHc-CCCEEEeccccccCHH
Confidence            3788999999999999999999999999999999887 8999999988887543

It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=92.76  E-value=0.41  Score=41.60  Aligned_cols=133  Identities=18%  Similarity=0.083  Sum_probs=73.8

Q ss_pred             CceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC------HHHHHHHHhcC-CCCCeeccccc
Q 018446          176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS------FENLEAVRSAG-VKCPLLCKEFI  248 (355)
Q Consensus       176 ~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS------~edL~~VR~a~-v~lPVLrKDFI  248 (355)
                      +..||+-+--.+.   . ....+..+.++.+.+.||+++.|... .||.-+      .++++.++++. .++|++-...-
T Consensus        48 ~~~v~~~v~~~~~---~-~~~~~~~~~a~~a~~~Gad~i~v~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p  122 (201)
T cd00945          48 DVPVIVVVGFPTG---L-TTTEVKVAEVEEAIDLGADEIDVVIN-IGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET  122 (201)
T ss_pred             CCeEEEEecCCCC---C-CcHHHHHHHHHHHHHcCCCEEEEecc-HHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC
Confidence            5677876533321   1 11235678899999999999999764 344445      78888888751 37898866542


Q ss_pred             ---cCHHHHHH----HHHcCCcchHHHHhcC----CHHHHHHHHHHHH-HcCCcEEEEeCCHHHHHHHhccCCCeEEE
Q 018446          249 ---VDAWQIYY----ARTKGADAVLLIAAVL----PDLDIRYMTKICK-LLGLTALVEVHDEREMDRVLGIEGIELIG  314 (355)
Q Consensus       249 ---IdpyQI~e----Ar~~GADAVLLIaaiL----~~~~L~~L~~~A~-~LGLeaLVEVH~~eELerAl~l~ga~iIG  314 (355)
                         +++-++.+    +...|+|+|=.-..-.    +...++.+.+... .+.+.++--+.+.+.+..++.+ |++-++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~-Ga~g~~  199 (201)
T cd00945         123 RGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEA-GADGIG  199 (201)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHh-ccceee
Confidence               23333333    3467888775433211    2233333332221 1122223333345777777765 665544

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=92.69  E-value=0.79  Score=43.16  Aligned_cols=95  Identities=23%  Similarity=0.187  Sum_probs=71.8

Q ss_pred             CCCCHHHHHHHHHHcCceEEEEec--c-CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHH-cCCcchHHHHh
Q 018446          195 EDFDPVEIARSYEKGGAACLSILT--D-EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAVLLIAA  270 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISVLT--D-~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~-~GADAVLLIaa  270 (355)
                      .+.++.++++.+.+.|+++|.+.+  . ..--+=+++.+..+++. +++||+.--=+-+.--+.++.. .|||+|+.=-+
T Consensus       151 ~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~-~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~a  229 (253)
T PRK02083        151 TGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDA-VNVPVIASGGAGNLEHFVEAFTEGGADAALAASI  229 (253)
T ss_pred             cCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHH
Confidence            356889999999999999998743  2 21111157888889885 7999999988888888888886 59999988666


Q ss_pred             cCC-HHHHHHHHHHHHHcCCc
Q 018446          271 VLP-DLDIRYMTKICKLLGLT  290 (355)
Q Consensus       271 iL~-~~~L~~L~~~A~~LGLe  290 (355)
                      +.. .-.++++.++++..|+.
T Consensus       230 l~~~~~~~~~~~~~~~~~~~~  250 (253)
T PRK02083        230 FHFGEITIGELKAYLAEQGIP  250 (253)
T ss_pred             HHcCCCCHHHHHHHHHHCCCc
Confidence            553 44677778888877765

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=92.66  E-value=0.55  Score=47.64  Aligned_cols=114  Identities=22%  Similarity=0.202  Sum_probs=73.8

Q ss_pred             CCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc----ccc-c--CHHH-----HHHHHHcCC
Q 018446          195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK----EFI-V--DAWQ-----IYYARTKGA  262 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK----DFI-I--dpyQ-----I~eAr~~GA  262 (355)
                      ...||..+-+.-.++|++|+..-      .|-++..  .+....++|++-|    .-+ -  ..+|     +.+|..+||
T Consensus        89 gl~dp~~~i~~a~~~g~dAv~~~------~G~l~~~--~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGA  160 (348)
T PRK09250         89 LYFDPENIVKLAIEAGCNAVAST------LGVLEAV--ARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGA  160 (348)
T ss_pred             cccCHHHHHHHHHhcCCCEEEeC------HHHHHhc--cccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCC
Confidence            46799999999999999998754      2333322  1222234564433    111 0  0122     789999999


Q ss_pred             cchHHHHhcCCHH------HHHHHHHHHHHcCCcEEEEeC-------CHHH-----------HHHHhccCCCeEEEeeC
Q 018446          263 DAVLLIAAVLPDL------DIRYMTKICKLLGLTALVEVH-------DERE-----------MDRVLGIEGIELIGINN  317 (355)
Q Consensus       263 DAVLLIaaiL~~~------~L~~L~~~A~~LGLeaLVEVH-------~~eE-----------LerAl~l~ga~iIGINN  317 (355)
                      |||-.-+-+-++.      +|..+.+.|+++||-.++.+.       +..+           ...|.++ ||+||=++=
T Consensus       161 dAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaEL-GADIVKv~y  238 (348)
T PRK09250        161 VAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATI-GADIIKQKL  238 (348)
T ss_pred             CEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHH-cCCEEEecC
Confidence            9998877766643      455566889999999998543       3332           2234566 999999874

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=92.55  E-value=0.12  Score=51.53  Aligned_cols=70  Identities=23%  Similarity=0.176  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHcCceEEEEe--------ccCCCCCC----CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcch
Q 018446          198 DPVEIARSYEKGGAACLSIL--------TDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAV  265 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL--------TD~~fF~G----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAV  265 (355)
                      ...+.|+...++||++|-|=        |......|    .+.-+..++++ .++||+..==|-+...|..|.++|||+|
T Consensus       146 ~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a-~~~pVIadGGIr~~~Di~KALa~GAd~V  224 (321)
T TIGR01306       146 GTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-ARKPIIADGGIRTHGDIAKSIRFGASMV  224 (321)
T ss_pred             CCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHh-cCCeEEEECCcCcHHHHHHHHHcCCCEE
Confidence            34578999999999998765        33331112    25678888875 7899999999999999999999999998


Q ss_pred             HHH
Q 018446          266 LLI  268 (355)
Q Consensus       266 LLI  268 (355)
                      .+=
T Consensus       225 mig  227 (321)
T TIGR01306       225 MIG  227 (321)
T ss_pred             eec
Confidence            763

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=92.53  E-value=0.48  Score=45.35  Aligned_cols=76  Identities=32%  Similarity=0.313  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHcCceEEEEe-c------cC-----------CCCCC------CHHHHHHHHhcCCCCCeeccccccCHHH
Q 018446          198 DPVEIARSYEKGGAACLSIL-T------DE-----------KYFKG------SFENLEAVRSAGVKCPLLCKEFIVDAWQ  253 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL-T------D~-----------~fF~G------S~edL~~VR~a~v~lPVLrKDFIIdpyQ  253 (355)
                      +..++|+..+++||++|.+. |      |.           ..+.|      +++.+..+++. +++||+.-==|-++-+
T Consensus       167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~-~~ipii~~GGI~~~~d  245 (296)
T cd04740         167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKA-VEIPIIGVGGIASGED  245 (296)
T ss_pred             hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHh-cCCCEEEECCCCCHHH
Confidence            68899999999999999763 1      11           12233      35888899885 7999999988999999


Q ss_pred             HHHHHHcCCcchHHHHhcCCH
Q 018446          254 IYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       254 I~eAr~~GADAVLLIaaiL~~  274 (355)
                      +.++..+|||+|-+--+++.+
T Consensus       246 a~~~l~~GAd~V~igra~l~~  266 (296)
T cd04740         246 ALEFLMAGASAVQVGTANFVD  266 (296)
T ss_pred             HHHHHHcCCCEEEEchhhhcC
Confidence            999999999999987776653

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=92.52  E-value=0.46  Score=45.63  Aligned_cols=81  Identities=20%  Similarity=0.209  Sum_probs=55.5

Q ss_pred             CCCHHHHHHHHhcCCCCCeeccccccCH-------HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC
Q 018446          224 KGSFENLEAVRSAGVKCPLLCKEFIVDA-------WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH  296 (355)
Q Consensus       224 ~GS~edL~~VR~a~v~lPVLrKDFIIdp-------yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH  296 (355)
                      ..-++.++.+|+..+++|++ ----..|       --+.+++.+|+|+|++-  -|+.++..++++.|+++|+++..=|.
T Consensus        72 ~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~  148 (256)
T TIGR00262        72 EKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVA  148 (256)
T ss_pred             HHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEEC
Confidence            35678889998633688955 1111222       23788999999997765  46677899999999999999664443


Q ss_pred             ---CHHHHHHHhcc
Q 018446          297 ---DEREMDRVLGI  307 (355)
Q Consensus       297 ---~~eELerAl~l  307 (355)
                         +.+.+....+.
T Consensus       149 P~T~~eri~~i~~~  162 (256)
T TIGR00262       149 PNADDERLKQIAEK  162 (256)
T ss_pred             CCCCHHHHHHHHHh
Confidence               35566555543

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=92.44  E-value=3.4  Score=39.00  Aligned_cols=138  Identities=15%  Similarity=0.102  Sum_probs=88.2

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCC--CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH-
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYF--KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD-  274 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF--~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~-  274 (355)
                      ||.++|+.|.+.||.-|-|.-=..-.  +-.++.++++++. +.+||---==|=+.-++.....+|||.+.+=.+.|.+ 
T Consensus        33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~-~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p  111 (241)
T PRK14024         33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGK-LDVKVELSGGIRDDESLEAALATGCARVNIGTAALENP  111 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHH-cCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCH
Confidence            99999999999999887664321111  1235677777775 7899987666778899999999999999887777764 


Q ss_pred             HHHHHHHHHHHH---cCCcE---EE-------EeCCHHHHHHHhccCCCeEEEeeCCCCCcc--ccChhhHHhhhcc
Q 018446          275 LDIRYMTKICKL---LGLTA---LV-------EVHDEREMDRVLGIEGIELIGINNRNLETF--EVDNSNTKKLLEG  336 (355)
Q Consensus       275 ~~L~~L~~~A~~---LGLea---LV-------EVH~~eELerAl~l~ga~iIGINNRdL~Tf--evDl~~t~~L~~~  336 (355)
                      +.+.++.+...+   ++++.   .|       +-.+..|+-+.+.-.|+.-|-+++|+-...  ..|.+...++.+.
T Consensus       112 ~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~  188 (241)
T PRK14024        112 EWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR  188 (241)
T ss_pred             HHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh
Confidence            334444433211   12222   11       112334544444334899888998875422  2466666666553

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=92.41  E-value=1.1  Score=46.88  Aligned_cols=119  Identities=21%  Similarity=0.206  Sum_probs=88.0

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH----H----HH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL----L----IA  269 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL----L----Ia  269 (355)
                      +..+.++.+.+.|+..|.|-+-..+-..-.+.++.+|+...++||++=|. ...-+...+..+|||+|-    -    +.
T Consensus       227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv-~t~~~a~~l~~aGad~v~vgig~gsictt  305 (479)
T PRK07807        227 DVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNV-VTAEGTRDLVEAGADIVKVGVGPGAMCTT  305 (479)
T ss_pred             hHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeecc-CCHHHHHHHHHcCCCEEEECccCCccccc
Confidence            55688999999999998887766664555677888887645788988774 567788888899999986    2    22


Q ss_pred             hc---CCHHHHHHHHHHHH---HcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeCC
Q 018446          270 AV---LPDLDIRYMTKICK---LLGLTALVE--VHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       270 ai---L~~~~L~~L~~~A~---~LGLeaLVE--VH~~eELerAl~l~ga~iIGINNR  318 (355)
                      +.   -+..++..+.+.|.   .+|.-++-|  +++..++.+|+.+ ||+-+.+-.-
T Consensus       306 ~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~-ga~~v~~g~~  361 (479)
T PRK07807        306 RMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAA-GASNVMIGSW  361 (479)
T ss_pred             ccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHc-CCCeeeccHh
Confidence            22   23346665555554   889888887  8999999999997 8876655443

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=92.37  E-value=0.58  Score=47.66  Aligned_cols=95  Identities=17%  Similarity=0.252  Sum_probs=71.8

Q ss_pred             CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcCC--HHHHHHHHHHHHHcC--CcEEE--EeC
Q 018446          226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVLP--DLDIRYMTKICKLLG--LTALV--EVH  296 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL~--~~~L~~L~~~A~~LG--LeaLV--EVH  296 (355)
                      +++||..+|+. .++||+-|-. .++--...|..+|+|+|.+--   ..|+  ...+.-|.+++..++  ++.++  -|.
T Consensus       212 tW~di~wlr~~-~~~PiivKgV-~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr  289 (367)
T PLN02493        212 SWKDVQWLQTI-TKLPILVKGV-LTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVR  289 (367)
T ss_pred             CHHHHHHHHhc-cCCCEEeecC-CCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcC
Confidence            57999999985 8999999998 589999999999999985421   1111  113445555656555  66666  489


Q ss_pred             CHHHHHHHhccCCCeEEEeeCCCCCcc
Q 018446          297 DEREMDRVLGIEGIELIGINNRNLETF  323 (355)
Q Consensus       297 ~~eELerAl~l~ga~iIGINNRdL~Tf  323 (355)
                      +-.|+-+|+.+ ||+.+||-..=|..+
T Consensus       290 ~G~Dv~KALAL-GA~aV~iGr~~l~~l  315 (367)
T PLN02493        290 RGTDVFKALAL-GASGIFIGRPVVFSL  315 (367)
T ss_pred             cHHHHHHHHHc-CCCEEEEcHHHHHHH
Confidence            99999999998 999999987655443

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=92.37  E-value=0.38  Score=46.98  Aligned_cols=79  Identities=24%  Similarity=0.332  Sum_probs=63.6

Q ss_pred             CCHHHHHHHHHHcCceEEEEe--ccCCCCCC--CHHHHHHHHhcCCCCCeeccccccCHHHHHHHH-HcCCcchHHHHhc
Q 018446          197 FDPVEIARSYEKGGAACLSIL--TDEKYFKG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR-TKGADAVLLIAAV  271 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVL--TD~~fF~G--S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr-~~GADAVLLIaai  271 (355)
                      .+..++|+.++++|+++|.|-  |-...|.|  .++.+..+++. +++||+.-==|-++-++.++. ..|||+|.+=-++
T Consensus       147 ~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~  225 (319)
T TIGR00737       147 INAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQA-VRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGA  225 (319)
T ss_pred             chHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhh
Confidence            457899999999999999884  32334444  57888888885 899999999899999999998 6899999987777


Q ss_pred             CCHHH
Q 018446          272 LPDLD  276 (355)
Q Consensus       272 L~~~~  276 (355)
                      |.+..
T Consensus       226 l~~P~  230 (319)
T TIGR00737       226 LGNPW  230 (319)
T ss_pred             hhCCh
Confidence            76544

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=92.35  E-value=0.67  Score=45.67  Aligned_cols=74  Identities=19%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHcCceEEEEecc---------------CCCCCCC------HHHHHHHHhcCC--CCCeeccccccCHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTD---------------EKYFKGS------FENLEAVRSAGV--KCPLLCKEFIVDAWQI  254 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD---------------~~fF~GS------~edL~~VR~a~v--~lPVLrKDFIIdpyQI  254 (355)
                      +..++|+..+++||++|++..-               ..-|.|.      ++.+..+|++ +  ++||..-==|.++-++
T Consensus       217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~-~~~~ipIi~~GGI~t~~da  295 (327)
T cd04738         217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKL-TGGKIPIIGVGGISSGEDA  295 (327)
T ss_pred             HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHH-hCCCCcEEEECCCCCHHHH
Confidence            5788999999999999987542               1123443      6888888885 6  7999988889999999


Q ss_pred             HHHHHcCCcchHHHHhcC
Q 018446          255 YYARTKGADAVLLIAAVL  272 (355)
Q Consensus       255 ~eAr~~GADAVLLIaaiL  272 (355)
                      .+...+|||+|-+--+++
T Consensus       296 ~e~l~aGAd~V~vg~~~~  313 (327)
T cd04738         296 YEKIRAGASLVQLYTGLV  313 (327)
T ss_pred             HHHHHcCCCHHhccHHHH
Confidence            999999999999877764

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=92.32  E-value=0.71  Score=43.93  Aligned_cols=117  Identities=15%  Similarity=0.217  Sum_probs=87.5

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA  257 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA  257 (355)
                      .||+=+.--+|.        +...++++..++|..||=|--...   +-++-++.+++. ..=-++==--++++-|+.+|
T Consensus        14 ~vI~Vlr~~~~e--------~a~~~a~Ali~gGi~~IEITl~sp---~a~e~I~~l~~~-~p~~lIGAGTVL~~~q~~~a   81 (211)
T COG0800          14 PVVPVIRGDDVE--------EALPLAKALIEGGIPAIEITLRTP---AALEAIRALAKE-FPEALIGAGTVLNPEQARQA   81 (211)
T ss_pred             CeeEEEEeCCHH--------HHHHHHHHHHHcCCCeEEEecCCC---CHHHHHHHHHHh-CcccEEccccccCHHHHHHH
Confidence            366655444443        467899999999999998854433   556777777764 22123334456899999999


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEE
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELI  313 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iI  313 (355)
                      ..+||+-|      .++.-=.++++.|...||-.+=-|-|..|+..|++. |++.+
T Consensus        82 ~~aGa~fi------VsP~~~~ev~~~a~~~~ip~~PG~~TptEi~~Ale~-G~~~l  130 (211)
T COG0800          82 IAAGAQFI------VSPGLNPEVAKAANRYGIPYIPGVATPTEIMAALEL-GASAL  130 (211)
T ss_pred             HHcCCCEE------ECCCCCHHHHHHHHhCCCcccCCCCCHHHHHHHHHc-Chhhe
Confidence            99999964      244344578999999999999999999999999997 87643

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=92.31  E-value=0.33  Score=47.82  Aligned_cols=74  Identities=19%  Similarity=0.317  Sum_probs=58.0

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCC-----------------------HHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGS-----------------------FENLEAVRSAGVKCPLLCKEFIVDAWQI  254 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS-----------------------~edL~~VR~a~v~lPVLrKDFIIdpyQI  254 (355)
                      |..++|+..+++||++|.+---  ++++.                       ++.+..++++ +++||+--==|-++.++
T Consensus       178 ~~~~~a~~l~~~G~dgI~~~n~--~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~-~~ipIig~GGI~s~~Da  254 (334)
T PRK07565        178 NLANMAKRLDAAGADGLVLFNR--FYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGR-VGADLAATTGVHDAEDV  254 (334)
T ss_pred             hHHHHHHHHHHcCCCeEEEECC--cCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhh-cCCCEEEECCCCCHHHH
Confidence            6889999999999999987321  12211                       3455666665 78999988889999999


Q ss_pred             HHHHHcCCcchHHHHhcCCH
Q 018446          255 YYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       255 ~eAr~~GADAVLLIaaiL~~  274 (355)
                      .+...+|||+|-+--+++.+
T Consensus       255 ~e~l~aGA~~V~v~t~~~~~  274 (334)
T PRK07565        255 IKMLLAGADVVMIASALLRH  274 (334)
T ss_pred             HHHHHcCCCceeeehHHhhh
Confidence            99999999999987777753

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=92.26  E-value=0.29  Score=48.55  Aligned_cols=120  Identities=22%  Similarity=0.219  Sum_probs=82.2

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe----ccCCCCCC-----CHHHHHHHHhcCCCCCeeccccc
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFI  248 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL----TD~~fF~G-----S~edL~~VR~a~v~lPVLrKDFI  248 (355)
                      +||.+|-             + .+.|+.-+++||+++-+|    .|..--+|     +++++.+++++ +++||.-|-=|
T Consensus        19 gvimdv~-------------~-~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~-V~iPVigk~Ri   83 (293)
T PRK04180         19 GVIMDVV-------------N-AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDA-VSIPVMAKARI   83 (293)
T ss_pred             CeEEEeC-------------C-HHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHh-CCCCeEEeehh
Confidence            5888882             2 246666677777766554    34333333     68999999996 99998766544


Q ss_pred             cCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhccCCCeEEEee
Q 018446          249 VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       249 IdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~-LGLeaLVEVH~~eELerAl~l~ga~iIGIN  316 (355)
                      -|-.....--++|+|-|= =...|.+  +.+++.+.+. ++.--+-.+.|.+|..++... |+++|+--
T Consensus        84 gh~~Ea~~L~~~GvDiID-~Te~lrp--ad~~~~~~K~~f~~~fmad~~~l~EAlrai~~-GadmI~Tt  148 (293)
T PRK04180         84 GHFVEAQILEALGVDYID-ESEVLTP--ADEEYHIDKWDFTVPFVCGARNLGEALRRIAE-GAAMIRTK  148 (293)
T ss_pred             hHHHHHHHHHHcCCCEEe-ccCCCCc--hHHHHHHHHHHcCCCEEccCCCHHHHHHHHHC-CCCeeecc
Confidence            442223333458999882 1123544  4466666665 588888899999999999996 99999987

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=92.21  E-value=0.16  Score=53.46  Aligned_cols=94  Identities=17%  Similarity=0.212  Sum_probs=68.5

Q ss_pred             EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE-------eccCCC------CCCCHHHHHHHHhcCCCCCeecc
Q 018446          179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-------LTDEKY------FKGSFENLEAVRSAGVKCPLLCK  245 (355)
Q Consensus       179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV-------LTD~~f------F~GS~edL~~VR~a~v~lPVLrK  245 (355)
                      .|.++|+.-|..-++..+..-.+-|+...++||++|-|       +|-+.-      ....+.++..+++. .++||++-
T Consensus       279 ~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~-~~vpVIad  357 (505)
T PLN02274        279 MIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ-HGVPVIAD  357 (505)
T ss_pred             HHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh-cCCeEEEe
Confidence            56778887775544444444445677778899999966       333220      12356678888774 78999999


Q ss_pred             ccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          246 EFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       246 DFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      -=|-++-+|..|.++|||+|.+=-++..
T Consensus       358 GGI~~~~di~kAla~GA~~V~vGs~~~~  385 (505)
T PLN02274        358 GGISNSGHIVKALTLGASTVMMGSFLAG  385 (505)
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEchhhcc
Confidence            9999999999999999999987555543

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=92.13  E-value=0.72  Score=45.51  Aligned_cols=85  Identities=26%  Similarity=0.304  Sum_probs=66.7

Q ss_pred             CCCCCCCCHHHHHHHHHHcCceEEEEecc--CCCCC--CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHH-cCCcch
Q 018446          191 GILREDFDPVEIARSYEKGGAACLSILTD--EKYFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAV  265 (355)
Q Consensus       191 G~I~~~~Dp~~iA~~Ye~~GAaaISVLTD--~~fF~--GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~-~GADAV  265 (355)
                      |+-....|..++|+.++++|+++|.|-.-  +..|.  .+++.+..++++ +++||+.-==|.++-++.+... .|||+|
T Consensus       143 G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~-~~iPVI~nGgI~s~~da~~~l~~~gadgV  221 (321)
T PRK10415        143 GWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK-VSIPVIANGDITDPLKARAVLDYTGADAL  221 (321)
T ss_pred             cccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHhccCCCEE
Confidence            43333457889999999999999987642  22343  468888899886 8999999999999999999996 699999


Q ss_pred             HHHHhcCCHHH
Q 018446          266 LLIAAVLPDLD  276 (355)
Q Consensus       266 LLIaaiL~~~~  276 (355)
                      .+==++|.+.-
T Consensus       222 miGR~~l~nP~  232 (321)
T PRK10415        222 MIGRAAQGRPW  232 (321)
T ss_pred             EEChHhhcCCh
Confidence            98777775533

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=91.88  E-value=0.62  Score=42.65  Aligned_cols=107  Identities=15%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             HHHHHHHHcCceEEEEeccCCCCC--CCHHHHHHHHhcCCCCCeeccccccC------HHHHHHHHHcCCcchHHHHhcC
Q 018446          201 EIARSYEKGGAACLSILTDEKYFK--GSFENLEAVRSAGVKCPLLCKEFIVD------AWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD~~fF~--GS~edL~~VR~a~v~lPVLrKDFIId------pyQI~eAr~~GADAVLLIaaiL  272 (355)
                      +.++...+.|  ++.++ ...+..  .-++.++.+++. .+.|+... ++++      .-.+..+..+|+|+|.|-..  
T Consensus        17 ~~~~~~~~~G--~ig~i-~~~~~~~~~~~~~~~~i~~~-~~~~~~v~-~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~--   89 (236)
T cd04730          17 ELAAAVSNAG--GLGFI-GAGYLTPEALRAEIRKIRAL-TDKPFGVN-LLVPSSNPDFEALLEVALEEGVPVVSFSFG--   89 (236)
T ss_pred             HHHHHHHhCC--Ccccc-CCCCCCHHHHHHHHHHHHHh-cCCCeEEe-EecCCCCcCHHHHHHHHHhCCCCEEEEcCC--
Confidence            4677777777  45554 222221  012344555543 23343322 2222      22567788899999876433  


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR  318 (355)
                         ....+++.++..|+..++-+|+.++++++.+. |++.|.+-++
T Consensus        90 ---~~~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~-gad~i~~~~~  131 (236)
T cd04730          90 ---PPAEVVERLKAAGIKVIPTVTSVEEARKAEAA-GADALVAQGA  131 (236)
T ss_pred             ---CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHc-CCCEEEEeCc
Confidence               22456777888999999999999999998885 8999888665

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=91.86  E-value=0.87  Score=42.99  Aligned_cols=96  Identities=15%  Similarity=0.037  Sum_probs=57.9

Q ss_pred             ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceE--EEEeccCCCCCCC-----HHHHHHHHhcCCCCCeecccccc
Q 018446          177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC--LSILTDEKYFKGS-----FENLEAVRSAGVKCPLLCKEFIV  249 (355)
Q Consensus       177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaa--ISVLTD~~fF~GS-----~edL~~VR~a~v~lPVLrKDFII  249 (355)
                      ...|.++...||-           +-.+.|.+....-  +||.  + -|++.     .+.+..+|+...+.|| .=||.|
T Consensus       130 l~~~~~v~p~T~~-----------e~l~~~~~~~~~~l~msv~--~-~~g~~~~~~~~~~i~~lr~~~~~~~i-~v~gGI  194 (244)
T PRK13125        130 LKPVFFTSPKFPD-----------LLIHRLSKLSPLFIYYGLR--P-ATGVPLPVSVERNIKRVRNLVGNKYL-VVGFGL  194 (244)
T ss_pred             CCEEEEECCCCCH-----------HHHHHHHHhCCCEEEEEeC--C-CCCCCchHHHHHHHHHHHHhcCCCCE-EEeCCc
Confidence            5677788666552           3334444433222  2442  2 23333     4566677775225785 469999


Q ss_pred             -CHHHHHHHHHcCCcchHHHHhcC---CHHHHHHHHHHHHHc
Q 018446          250 -DAWQIYYARTKGADAVLLIAAVL---PDLDIRYMTKICKLL  287 (355)
Q Consensus       250 -dpyQI~eAr~~GADAVLLIaaiL---~~~~L~~L~~~A~~L  287 (355)
                       .+-|+.++..+|||+++.=-+++   .+.+++++.++++++
T Consensus       195 ~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~~  236 (244)
T PRK13125        195 DSPEDARDALSAGADGVVVGTAFIEELEKNGVESALNLLKKI  236 (244)
T ss_pred             CCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHH
Confidence             99999999999999998754443   233355555555443

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=91.85  E-value=0.11  Score=53.32  Aligned_cols=93  Identities=19%  Similarity=0.210  Sum_probs=62.3

Q ss_pred             EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe-------ccCCCCC-C--CHHHHHHHHhc--CCCCCeeccc
Q 018446          179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-------TDEKYFK-G--SFENLEAVRSA--GVKCPLLCKE  246 (355)
Q Consensus       179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL-------TD~~fF~-G--S~edL~~VR~a--~v~lPVLrKD  246 (355)
                      .|.++|+.-|..-++-.+..-.+-|+...++||++|.|=       |-...-+ |  .+..+..+++.  ..++||++-=
T Consensus       184 ~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdG  263 (404)
T PRK06843        184 LVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADG  263 (404)
T ss_pred             HHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeC
Confidence            455777777764443434444567888888999999753       2221111 1  34555444432  2579999999


Q ss_pred             cccCHHHHHHHHHcCCcchHHHHhc
Q 018446          247 FIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       247 FIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      =|-++.+|..|.++|||+|.+=-++
T Consensus       264 GI~~~~Di~KALalGA~aVmvGs~~  288 (404)
T PRK06843        264 GIRFSGDVVKAIAAGADSVMIGNLF  288 (404)
T ss_pred             CCCCHHHHHHHHHcCCCEEEEccee
Confidence            9999999999999999999864433

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=91.81  E-value=0.72  Score=47.19  Aligned_cols=93  Identities=19%  Similarity=0.283  Sum_probs=70.7

Q ss_pred             CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cC--CHHHHHHHHHHHHHcC--CcEEE--EeC
Q 018446          226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLLG--LTALV--EVH  296 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL--~~~~L~~L~~~A~~LG--LeaLV--EVH  296 (355)
                      ++++|+.+|+. .++||+-|.. +++-....|..+|+|+|.+--.   .+  ....+..|.+++..++  +..++  -|.
T Consensus       241 tW~~i~~lr~~-~~~pvivKgV-~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr  318 (383)
T cd03332         241 TWEDLAFLREW-TDLPIVLKGI-LHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVR  318 (383)
T ss_pred             CHHHHHHHHHh-cCCCEEEecC-CCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcC
Confidence            57999999985 8999999977 8899999999999999874311   11  1123445566666554  66666  489


Q ss_pred             CHHHHHHHhccCCCeEEEeeCCCCC
Q 018446          297 DEREMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       297 ~~eELerAl~l~ga~iIGINNRdL~  321 (355)
                      +-.++-+|+.+ ||+.++|-..=|.
T Consensus       319 ~G~Dv~KALaL-GA~~v~iGr~~l~  342 (383)
T cd03332         319 TGADIMKALAL-GAKAVLIGRPYAY  342 (383)
T ss_pred             cHHHHHHHHHc-CCCEEEEcHHHHH
Confidence            99999999998 9999999665553

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=91.78  E-value=0.58  Score=43.03  Aligned_cols=76  Identities=29%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHHcCceEEEEe----ccC--CCCCCCHHHHHHHHhcCCCCCeecccccc-CHHHHHHHHHcCCcchHHHHh
Q 018446          198 DPVEIARSYEKGGAACLSIL----TDE--KYFKGSFENLEAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL----TD~--~fF~GS~edL~~VR~a~v~lPVLrKDFII-dpyQI~eAr~~GADAVLLIaa  270 (355)
                      ++.+ +....+.|++.|.+-    |..  ..+...++.++.+++. +++||+. .+.| ++.++.++..+|||+|++--+
T Consensus       132 t~~e-a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~-~~ipvia-~GGI~~~~~~~~~l~~GadgV~vGsa  208 (219)
T cd04729         132 TLEE-ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA-LGIPVIA-EGRINSPEQAAKALELGADAVVVGSA  208 (219)
T ss_pred             CHHH-HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHh-cCCCEEE-eCCCCCHHHHHHHHHCCCCEEEEchH
Confidence            3444 455667799999662    221  2344568999999985 7999998 6777 899999999999999998877


Q ss_pred             cCCHHH
Q 018446          271 VLPDLD  276 (355)
Q Consensus       271 iL~~~~  276 (355)
                      +...++
T Consensus       209 l~~~~~  214 (219)
T cd04729         209 ITRPEH  214 (219)
T ss_pred             HhChHh
Confidence            776543

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=91.61  E-value=0.71  Score=46.78  Aligned_cols=96  Identities=19%  Similarity=0.143  Sum_probs=68.8

Q ss_pred             CHHHHHHHHHHcCceEEEE----------e-------------ccCCCCCCC------HHHHHHHHhcCC---CCCeecc
Q 018446          198 DPVEIARSYEKGGAACLSI----------L-------------TDEKYFKGS------FENLEAVRSAGV---KCPLLCK  245 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISV----------L-------------TD~~fF~GS------~edL~~VR~a~v---~lPVLrK  245 (355)
                      +..++|+..+++||++|+.          -             |....|.|.      ++.+..++++ +   ++||+--
T Consensus       181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~-~~~~~ipIig~  259 (420)
T PRK08318        181 DIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD-PETRGLPISGI  259 (420)
T ss_pred             cHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc-cccCCCCEEee
Confidence            6789999999999999993          1             222345563      5777777775 5   7899988


Q ss_pred             ccccCHHHHHHHHHcCCcchHHHHhcCC--HH----HHHHHHHHHHHcCCcEEEE
Q 018446          246 EFIVDAWQIYYARTKGADAVLLIAAVLP--DL----DIRYMTKICKLLGLTALVE  294 (355)
Q Consensus       246 DFIIdpyQI~eAr~~GADAVLLIaaiL~--~~----~L~~L~~~A~~LGLeaLVE  294 (355)
                      ==|.+...+++...+|||+|.+--+++-  +.    -..+|-++-.+.|+..+-|
T Consensus       260 GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~~si~e  314 (420)
T PRK08318        260 GGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGFASLED  314 (420)
T ss_pred             cCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcCcchHHH
Confidence            8889999999999999999998766654  32    2334445566677554433

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=91.50  E-value=0.64  Score=45.88  Aligned_cols=89  Identities=18%  Similarity=0.234  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCC-----------------------CHHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKG-----------------------SFENLEAVRSAGVKCPLLCKEFIVDAWQI  254 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G-----------------------S~edL~~VR~a~v~lPVLrKDFIIdpyQI  254 (355)
                      +..++|+..+++||++|++---  +++.                       +++.+..+++. +++||.--==|.++..+
T Consensus       176 ~~~~~a~~l~~~Gadgi~~~nt--~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~-~~ipIig~GGI~s~~Da  252 (325)
T cd04739         176 ALAHMAKQLDAAGADGLVLFNR--FYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGR-VKASLAASGGVHDAEDV  252 (325)
T ss_pred             CHHHHHHHHHHcCCCeEEEEcC--cCCCCccccccceecCCCcCCccchhHHHHHHHHHHcc-cCCCEEEECCCCCHHHH
Confidence            6889999999999999987321  1111                       24566777775 78999988889999999


Q ss_pred             HHHHHcCCcchHHHHhcCCH------HHHHHHHHHHHHcCC
Q 018446          255 YYARTKGADAVLLIAAVLPD------LDIRYMTKICKLLGL  289 (355)
Q Consensus       255 ~eAr~~GADAVLLIaaiL~~------~~L~~L~~~A~~LGL  289 (355)
                      ++...+|||+|-+--+++-.      +=+++|.++..+.|.
T Consensus       253 ~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~  293 (325)
T cd04739         253 VKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGY  293 (325)
T ss_pred             HHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCC
Confidence            99999999999998777753      233444455555554

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=91.40  E-value=0.68  Score=47.36  Aligned_cols=95  Identities=19%  Similarity=0.297  Sum_probs=71.7

Q ss_pred             CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcCC--HHHHHHHHHHHHHc--CCcEEEE--eC
Q 018446          226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVLP--DLDIRYMTKICKLL--GLTALVE--VH  296 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL~--~~~L~~L~~~A~~L--GLeaLVE--VH  296 (355)
                      +++||+.+|+. .++||+.|-. +++-....+..+|+|+|.+--   ..|+  ...+..|.+++...  +++.++-  |+
T Consensus       233 tW~di~~lr~~-~~~pvivKgV-~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr  310 (381)
T PRK11197        233 SWKDLEWIRDF-WDGPMVIKGI-LDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIR  310 (381)
T ss_pred             CHHHHHHHHHh-CCCCEEEEec-CCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcC
Confidence            68999999995 9999999998 899999999999999986321   0111  11234455555444  4777774  89


Q ss_pred             CHHHHHHHhccCCCeEEEeeCCCCCcc
Q 018446          297 DEREMDRVLGIEGIELIGINNRNLETF  323 (355)
Q Consensus       297 ~~eELerAl~l~ga~iIGINNRdL~Tf  323 (355)
                      +-.++-+||.+ ||+.++|-..=|..+
T Consensus       311 ~g~Di~KALaL-GA~~V~iGr~~l~~l  336 (381)
T PRK11197        311 NGLDVVRMIAL-GADTVLLGRAFVYAL  336 (381)
T ss_pred             cHHHHHHHHHc-CcCceeEhHHHHHHH
Confidence            99999999998 999999876554443

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=91.37  E-value=0.58  Score=42.61  Aligned_cols=78  Identities=19%  Similarity=0.356  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC---CCC-CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHc-CCcchHHHHhcC
Q 018446          198 DPVEIARSYEKGGAACLSILTDE---KYF-KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GADAVLLIAAVL  272 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~---~fF-~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~-GADAVLLIaaiL  272 (355)
                      +..++++.+++.|++.|+|-.-.   .+. ...++.+..+|+. +++||..--=|-++-++.++... |||+|.+=-++|
T Consensus       139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l  217 (231)
T cd02801         139 ETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGAL  217 (231)
T ss_pred             HHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhH
Confidence            67889999999999999875532   122 3568899999985 89999999988899999999998 899998877766


Q ss_pred             CHHH
Q 018446          273 PDLD  276 (355)
Q Consensus       273 ~~~~  276 (355)
                      .+..
T Consensus       218 ~~P~  221 (231)
T cd02801         218 GNPW  221 (231)
T ss_pred             hCCH
Confidence            6533

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=91.35  E-value=0.64  Score=46.84  Aligned_cols=77  Identities=21%  Similarity=0.196  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~  274 (355)
                      ||+ .|+.+++.|+.|+--|+++---+=   +.++++.+++. .++||++-==|=.|-++++|.++|||+||+--++..-
T Consensus       207 d~~-~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a  284 (326)
T PRK11840        207 DPI-AAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEA  284 (326)
T ss_pred             CHH-HHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccC
Confidence            454 889999999988777777642111   57899999986 7899999999999999999999999999998888754


Q ss_pred             HH
Q 018446          275 LD  276 (355)
Q Consensus       275 ~~  276 (355)
                      ++
T Consensus       285 ~d  286 (326)
T PRK11840        285 KN  286 (326)
T ss_pred             CC
Confidence            33

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=91.03  E-value=0.16  Score=51.35  Aligned_cols=89  Identities=21%  Similarity=0.206  Sum_probs=66.1

Q ss_pred             EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEE-------EEeccCCCCCCCHHHHHHHHh-----cCCCCCeeccc
Q 018446          179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACL-------SILTDEKYFKGSFENLEAVRS-----AGVKCPLLCKE  246 (355)
Q Consensus       179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaI-------SVLTD~~fF~GS~edL~~VR~-----a~v~lPVLrKD  246 (355)
                      .|-++|+.-|..-+|..+.--.+.|+....+||+++       ||+|-+.--+=..--|.+|..     .....||+..-
T Consensus       141 ~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADG  220 (346)
T PRK05096        141 FVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDG  220 (346)
T ss_pred             HHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecC
Confidence            455666666776666666555579999999999999       567766544444445555532     12478999999


Q ss_pred             cccCHHHHHHHHHcCCcchHH
Q 018446          247 FIVDAWQIYYARTKGADAVLL  267 (355)
Q Consensus       247 FIIdpyQI~eAr~~GADAVLL  267 (355)
                      =|-.+--|..|..+|||+|.|
T Consensus       221 Gi~~sGDI~KAlaaGAd~VMl  241 (346)
T PRK05096        221 GCTVPGDVAKAFGGGADFVML  241 (346)
T ss_pred             CcccccHHHHHHHcCCCEEEe
Confidence            999999999999999999976

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=91.02  E-value=1.2  Score=41.54  Aligned_cols=90  Identities=23%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             CCCCHHHHHHHHHHcCceEEEE--eccC-CCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHc-CCcchHHHHh
Q 018446          195 EDFDPVEIARSYEKGGAACLSI--LTDE-KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GADAVLLIAA  270 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISV--LTD~-~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~-GADAVLLIaa  270 (355)
                      .+.+..++++.+++.|++.|-|  .+.. ..-+-.++.+..+++. +++||+.--=|-++-.+.+.... |||+|++=-+
T Consensus       147 ~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~-~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~a  225 (243)
T cd04731         147 TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA-VNIPVIASGGAGKPEHFVEAFEEGGADAALAASI  225 (243)
T ss_pred             cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHH
Confidence            3567889999999999999988  4432 1222357888999885 79999999888999999999887 9999988666


Q ss_pred             cCCH-HHHHHHHHHHH
Q 018446          271 VLPD-LDIRYMTKICK  285 (355)
Q Consensus       271 iL~~-~~L~~L~~~A~  285 (355)
                      +.+. -.++++.++++
T Consensus       226 l~~~~~~~~~~~~~~~  241 (243)
T cd04731         226 FHFGEYTIAELKEYLA  241 (243)
T ss_pred             HHcCCCCHHHHHHHHh
Confidence            6543 34555555554

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=90.98  E-value=2.2  Score=44.53  Aligned_cols=144  Identities=12%  Similarity=0.135  Sum_probs=97.8

Q ss_pred             ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec-cCCCCCCCHHHHHHHHhcCC--CCCeeccccccCHHH
Q 018446          177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGV--KCPLLCKEFIVDAWQ  253 (355)
Q Consensus       177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT-D~~fF~GS~edL~~VR~a~v--~lPVLrKDFIIdpyQ  253 (355)
                      +-++.||             .|..++-++.. .||.-|.|+. |-+-|.-+++.-..++.. +  +..++.-==|-.+-+
T Consensus       160 l~~lvEv-------------h~~~El~~al~-~~a~iiGiNnRdL~t~~vd~~~~~~l~~~-ip~~~~~vseSGI~t~~d  224 (454)
T PRK09427        160 MGVLTEV-------------SNEEELERAIA-LGAKVIGINNRNLRDLSIDLNRTRELAPL-IPADVIVISESGIYTHAQ  224 (454)
T ss_pred             CcEEEEE-------------CCHHHHHHHHh-CCCCEEEEeCCCCccceECHHHHHHHHhh-CCCCcEEEEeCCCCCHHH
Confidence            5688888             35666666655 5999999975 566788887777777653 2  111222222346788


Q ss_pred             HHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhh
Q 018446          254 IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL  333 (355)
Q Consensus       254 I~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L  333 (355)
                      +...+. ||||||.=-+++..++....++--. .+.--+.-+.+.+++..|.++ |++.||+.----.--.|+++.+.+|
T Consensus       225 ~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~-~~~vKICGit~~eda~~a~~~-GaD~lGfIf~~~SpR~V~~~~a~~i  301 (454)
T PRK09427        225 VRELSP-FANGFLIGSSLMAEDDLELAVRKLI-LGENKVCGLTRPQDAKAAYDA-GAVYGGLIFVEKSPRYVSLEQAQEI  301 (454)
T ss_pred             HHHHHh-cCCEEEECHHHcCCCCHHHHHHHHh-ccccccCCCCCHHHHHHHHhC-CCCEEeeEeCCCCCCCCCHHHHHHH
Confidence            888776 7999999888887655443222111 133345566899999999997 9999999843334455899999999


Q ss_pred             hcccc
Q 018446          334 LEGER  338 (355)
Q Consensus       334 ~~~~~  338 (355)
                      ...++
T Consensus       302 ~~~l~  306 (454)
T PRK09427        302 IAAAP  306 (454)
T ss_pred             HHhCC
Confidence            87644

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=90.97  E-value=2.4  Score=41.36  Aligned_cols=127  Identities=22%  Similarity=0.181  Sum_probs=82.5

Q ss_pred             ccHHHHHHhhhhcCCCceEEeEeeecC---C-C------CCCCCCCCCHHHHHHHHHHcCceEEEE---eccCCCCCCCH
Q 018446          161 RDFIGALMAANQRTGLPALIAEVKKAS---P-S------RGILREDFDPVEIARSYEKGGAACLSI---LTDEKYFKGSF  227 (355)
Q Consensus       161 rdF~~aL~~~~~~~g~~aVIAEvKRaS---P-S------kG~I~~~~Dp~~iA~~Ye~~GAaaISV---LTD~~fF~GS~  227 (355)
                      .+|+.-+..... .-...|=...||..   + .      .|.-....|+.+.|+.+++.||-=|-+   --|-.-=+=++
T Consensus       110 p~lI~~~a~~FG-sQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl  188 (256)
T COG0107         110 PELITEAADRFG-SQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDL  188 (256)
T ss_pred             hHHHHHHHHHhC-CceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCH
Confidence            356666655431 11223334667753   2 1      144455789999999999999987743   33444444468


Q ss_pred             HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCCH--HHHHHHHHHHHHcCCc
Q 018446          228 ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLPD--LDIRYMTKICKLLGLT  290 (355)
Q Consensus       228 edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~~--~~L~~L~~~A~~LGLe  290 (355)
                      +.++.|+.+ +++||+..-=-=.+--++||...| |||+| -++++-.  -.+.++-+|-.+-|++
T Consensus       189 ~l~~~v~~~-v~iPvIASGGaG~~ehf~eaf~~~~adAaL-AAsiFH~~~~~i~evK~yL~~~gi~  252 (256)
T COG0107         189 ELTRAVREA-VNIPVIASGGAGKPEHFVEAFTEGKADAAL-AASIFHFGEITIGEVKEYLAEQGIE  252 (256)
T ss_pred             HHHHHHHHh-CCCCEEecCCCCcHHHHHHHHHhcCccHHH-hhhhhhcCcccHHHHHHHHHHcCCC
Confidence            999999996 999999877666777888999888 99965 4555422  2344555555555554

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=90.86  E-value=3  Score=42.81  Aligned_cols=134  Identities=17%  Similarity=0.209  Sum_probs=84.6

Q ss_pred             ceEEeEeee-cCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCC----------CCCCHHHH----HHHHhcCCCCC
Q 018446          177 PALIAEVKK-ASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKY----------FKGSFENL----EAVRSAGVKCP  241 (355)
Q Consensus       177 ~aVIAEvKR-aSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~f----------F~GS~edL----~~VR~a~v~lP  241 (355)
                      ..||+-+-- .|+.        |-.++|+..++.||++|=+..=-.+          |+=+.+.+    ..||++ +++|
T Consensus       114 ~pvIaSi~~~~s~~--------~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iP  184 (385)
T PLN02495        114 RILIASIMEEYNKD--------AWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVP  184 (385)
T ss_pred             CcEEEEccCCCCHH--------HHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCc
Confidence            368888743 3332        5668899999999999988653211          22345666    444764 7899


Q ss_pred             eecc---ccccCHHHHHH-HHHcCCcchHHHHhcCCH------------------------------HHHHHHHHHHHHc
Q 018446          242 LLCK---EFIVDAWQIYY-ARTKGADAVLLIAAVLPD------------------------------LDIRYMTKICKLL  287 (355)
Q Consensus       242 VLrK---DFIIdpyQI~e-Ar~~GADAVLLIaaiL~~------------------------------~~L~~L~~~A~~L  287 (355)
                      |+-|   |+ -|.-++.+ |...|||+|.+|=.+.+.                              --|....++++.+
T Consensus       185 v~vKLsPn~-t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~  263 (385)
T PLN02495        185 VWAKMTPNI-TDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMM  263 (385)
T ss_pred             eEEEeCCCh-hhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence            9888   33 24455666 778999999997655420                              0111122233433


Q ss_pred             C--------CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446          288 G--------LTALVEVHDEREMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       288 G--------LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~  321 (355)
                      .        +-..==|+|.+|+-+.+.+ ||++|.|---.+.
T Consensus       264 ~~~~~~~ipIiGvGGI~s~~Da~e~i~a-GAs~VQv~Ta~~~  304 (385)
T PLN02495        264 KSEFPEDRSLSGIGGVETGGDAAEFILL-GADTVQVCTGVMM  304 (385)
T ss_pred             hhhccCCCcEEEECCCCCHHHHHHHHHh-CCCceeEeeeeee
Confidence            2        2233357999999998886 9999988655443

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=90.70  E-value=0.17  Score=53.09  Aligned_cols=95  Identities=21%  Similarity=0.225  Sum_probs=60.9

Q ss_pred             EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE-------eccCCCCC-C--CHHHHHHHHhc--CCCCCeeccc
Q 018446          179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-------LTDEKYFK-G--SFENLEAVRSA--GVKCPLLCKE  246 (355)
Q Consensus       179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV-------LTD~~fF~-G--S~edL~~VR~a--~v~lPVLrKD  246 (355)
                      .|.++|+..|..-++..+.--.+-|+...++||++|-|       +|-....+ |  .+.-+..++++  ..++||+.-=
T Consensus       272 ~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadG  351 (495)
T PTZ00314        272 MIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADG  351 (495)
T ss_pred             HHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecC
Confidence            46667776665433332322235778888999999944       44432222 1  12232233221  2578999988


Q ss_pred             cccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          247 FIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       247 FIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      =|-++.+|..|.++|||+|.+=-.+..
T Consensus       352 Gi~~~~di~kAla~GA~~Vm~G~~~a~  378 (495)
T PTZ00314        352 GIKNSGDICKALALGADCVMLGSLLAG  378 (495)
T ss_pred             CCCCHHHHHHHHHcCCCEEEECchhcc
Confidence            899999999999999999987554443

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=90.68  E-value=0.26  Score=48.84  Aligned_cols=71  Identities=25%  Similarity=0.223  Sum_probs=49.5

Q ss_pred             HHHHHHHHHcCceEEEE-------eccCCCCC---CCHHHHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHH
Q 018446          200 VEIARSYEKGGAACLSI-------LTDEKYFK---GSFENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLL  267 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISV-------LTD~~fF~---GS~edL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL  267 (355)
                      .+.|+...++||++|.|       .|.....+   +.+.-+..++++  ..++||+.--=|-++-+|..|..+|||+|.+
T Consensus       146 ~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi  225 (325)
T cd00381         146 AEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML  225 (325)
T ss_pred             HHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence            46788888999999987       33222111   233344444432  1469999888888999999999999999987


Q ss_pred             HHh
Q 018446          268 IAA  270 (355)
Q Consensus       268 Iaa  270 (355)
                      =-.
T Consensus       226 Gt~  228 (325)
T cd00381         226 GSL  228 (325)
T ss_pred             cch
Confidence            333

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=90.63  E-value=2.1  Score=42.61  Aligned_cols=89  Identities=15%  Similarity=0.179  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHhcCCCCCee--ccccccCHHHHHHHHHcCCcchHHHHhcCC----HHHHHHHHHHHHHcCCcEEEEeC
Q 018446          223 FKGSFENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLP----DLDIRYMTKICKLLGLTALVEVH  296 (355)
Q Consensus       223 F~GS~edL~~VR~a~v~lPVL--rKDFIIdpyQI~eAr~~GADAVLLIaaiL~----~~~L~~L~~~A~~LGLeaLVEVH  296 (355)
                      .+=+++.|..+++. .++||+  +-==|-+|-++.+...+|||+|...-++..    .+..+.|.+....        -+
T Consensus       182 ~~~~~elLkei~~~-~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~--------~~  252 (287)
T TIGR00343       182 LRVPVELLLEVLKL-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH--------YD  252 (287)
T ss_pred             cCCCHHHHHHHHHh-CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH--------cC
Confidence            34678999999985 789998  554455999999999999999999999983    3345556655444        45


Q ss_pred             CHHHHHHHh-ccCCCeEEEeeCCCCC
Q 018446          297 DEREMDRVL-GIEGIELIGINNRNLE  321 (355)
Q Consensus       297 ~~eELerAl-~l~ga~iIGINNRdL~  321 (355)
                      |.+-+..+- .+ |-.+.|||-..|.
T Consensus       253 ~~~~~~e~s~~~-~~~m~g~~~~~~~  277 (287)
T TIGR00343       253 NPEKLAEVSKDL-GEAMKGISISSIS  277 (287)
T ss_pred             CHHHHHHHHccc-cccCCCCccccCC
Confidence            666555543 44 6679999988775

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=90.52  E-value=1.6  Score=42.53  Aligned_cols=150  Identities=25%  Similarity=0.257  Sum_probs=100.3

Q ss_pred             CCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH---HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH
Q 018446          193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA  269 (355)
Q Consensus       193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~---edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa  269 (355)
                      ++.--||+++|+.|.+.||+=|-.|-=.-...|.-   +-+..+.+ .+.+|+--=-=|=+.--+.+-..+|||-|=+..
T Consensus        26 lrd~GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~-~vfiPltVGGGI~s~eD~~~ll~aGADKVSINs  104 (256)
T COG0107          26 LRDAGDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAE-QVFIPLTVGGGIRSVEDARKLLRAGADKVSINS  104 (256)
T ss_pred             hhhcCChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHh-hceeeeEecCCcCCHHHHHHHHHcCCCeeeeCh
Confidence            45556999999999999999998876666666754   44445544 378898766666666667777888999999988


Q ss_pred             hcCCHHHHHHHHHHHHHcCCcEEEE----------------eCC--------HHHHH---HHhccCCCe--EEEeeCCCC
Q 018446          270 AVLPDLDIRYMTKICKLLGLTALVE----------------VHD--------EREMD---RVLGIEGIE--LIGINNRNL  320 (355)
Q Consensus       270 aiL~~~~L~~L~~~A~~LGLeaLVE----------------VH~--------~eELe---rAl~l~ga~--iIGINNRdL  320 (355)
                      +.+.+.+|  ..+.|..+|-+++|=                |.+        ..-++   ++-++ ||=  ++--=+||=
T Consensus       105 aAv~~p~l--I~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~-GAGEIlLtsmD~DG  181 (256)
T COG0107         105 AAVKDPEL--ITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEEL-GAGEILLTSMDRDG  181 (256)
T ss_pred             hHhcChHH--HHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHc-CCceEEEeeecccc
Confidence            88876554  347889999999872                211        11122   22222 443  333335555


Q ss_pred             CccccChhhHHhhhccccccccccCc
Q 018446          321 ETFEVDNSNTKKLLEGERGEIIRQKN  346 (355)
Q Consensus       321 ~TfevDl~~t~~L~~~~~~~~l~~~~  346 (355)
                      ..--.|++.+..+.+..+-+.|-..|
T Consensus       182 tk~GyDl~l~~~v~~~v~iPvIASGG  207 (256)
T COG0107         182 TKAGYDLELTRAVREAVNIPVIASGG  207 (256)
T ss_pred             cccCcCHHHHHHHHHhCCCCEEecCC
Confidence            56667888888887766655554433

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=90.43  E-value=1.7  Score=41.38  Aligned_cols=122  Identities=15%  Similarity=0.169  Sum_probs=91.0

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhc-CCCCC--eeccccccCHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-GVKCP--LLCKEFIVDAWQI  254 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a-~v~lP--VLrKDFIIdpyQI  254 (355)
                      .||+=+.-.+|.        +..+++++..++|..+|=|--..   .+.++-++.+++. .-..|  ++-==-|+++-|.
T Consensus        16 ~vi~Vvr~~~~~--------~a~~~~~al~~gGi~~iEiT~~t---p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a   84 (222)
T PRK07114         16 GMVPVFYHADVE--------VAKKVIKACYDGGARVFEFTNRG---DFAHEVFAELVKYAAKELPGMILGVGSIVDAATA   84 (222)
T ss_pred             CEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEeCCC---CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHH
Confidence            466666444443        56789999999999998875443   2577777777532 11334  3444457899999


Q ss_pred             HHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          255 YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       255 ~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                      ..|..+||+-++-  -.++    .+++++|++.|+-.+==+-|..|+..|+++ |+++|=+.=
T Consensus        85 ~~a~~aGA~FiVs--P~~~----~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~-Ga~~vKlFP  140 (222)
T PRK07114         85 ALYIQLGANFIVT--PLFN----PDIAKVCNRRKVPYSPGCGSLSEIGYAEEL-GCEIVKLFP  140 (222)
T ss_pred             HHHHHcCCCEEEC--CCCC----HHHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEECc
Confidence            9999999997542  2344    478999999999999999999999999997 998886654

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase

Probab=90.30  E-value=3.9  Score=37.85  Aligned_cols=64  Identities=28%  Similarity=0.359  Sum_probs=44.0

Q ss_pred             HHHHHHHcCCcchHHHHhcCC----H--------HHHHHHHHHHHHcCCcEEEEeC-----------CHHHHHHHhccCC
Q 018446          253 QIYYARTKGADAVLLIAAVLP----D--------LDIRYMTKICKLLGLTALVEVH-----------DEREMDRVLGIEG  309 (355)
Q Consensus       253 QI~eAr~~GADAVLLIaaiL~----~--------~~L~~L~~~A~~LGLeaLVEVH-----------~~eELerAl~l~g  309 (355)
                      -|..|+.+||..|.+.....+    .        +.++++.++|.+.|+...+|.|           |.+++.+.++.-+
T Consensus        89 ~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~~v~  168 (254)
T TIGR03234        89 AIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVIDDVG  168 (254)
T ss_pred             HHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHHHhC
Confidence            466788999988766544321    1        2478899999999999999975           5666666664223


Q ss_pred             CeEEEee
Q 018446          310 IELIGIN  316 (355)
Q Consensus       310 a~iIGIN  316 (355)
                      .+-+||+
T Consensus       169 ~~~~~i~  175 (254)
T TIGR03234       169 RENLKLQ  175 (254)
T ss_pred             CCCEeEe
Confidence            3445553

This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.

>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins

Probab=89.99  E-value=6.4  Score=35.75  Aligned_cols=121  Identities=25%  Similarity=0.206  Sum_probs=75.2

Q ss_pred             CceEEeEeeecCCCCCCCCCCCCHH-HHHHHHHHcCce-EEEEeccCCCCCCCHHHHHHHHhcCCCCCe--eccccccCH
Q 018446          176 LPALIAEVKKASPSRGILREDFDPV-EIARSYEKGGAA-CLSILTDEKYFKGSFENLEAVRSAGVKCPL--LCKEFIVDA  251 (355)
Q Consensus       176 ~~aVIAEvKRaSPSkG~I~~~~Dp~-~iA~~Ye~~GAa-aISVLTD~~fF~GS~edL~~VR~a~v~lPV--LrKDFIIdp  251 (355)
                      ...++.|+|-..+.      ....+ .+...+.+.|.. .=.+++   .|  +.+.|..+|+...++|+  +..+..-+.
T Consensus       100 ~~~l~iEiK~~~~~------~~~~~~~v~~~l~~~~~~~~~v~~~---Sf--~~~~l~~~~~~~p~~~~~~l~~~~~~~~  168 (229)
T cd08562         100 GLGLNLEIKPDPGD------EALTARVVAAALRELWPHASKLLLS---SF--SLEALRAARRAAPELPLGLLFDTLPADW  168 (229)
T ss_pred             CCEEEEEECCCCCc------cHHHHHHHHHHHHHhcCCcCCEEEE---CC--CHHHHHHHHHhCCCCcEEEEecCCCcCH
Confidence            35799999954442      11122 345555555542 111111   12  67888888875444543  333322222


Q ss_pred             HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEEE
Q 018446          252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIG  314 (355)
Q Consensus       252 yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iIG  314 (355)
                        ...++..|++++.+-...+++    .+++.+++.|+.+.+= |.+.+++++++.+ |++-|-
T Consensus       169 --~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~g~~v~~wTvn~~~~~~~~~~~-gVdgii  225 (229)
T cd08562         169 --LELLAALGAVSIHLNYRGLTE----EQVKALKDAGYKLLVYTVNDPARAAELLEW-GVDAIF  225 (229)
T ss_pred             --HHHHHHcCCeEEecChhhCCH----HHHHHHHHCCCEEEEEeCCCHHHHHHHHHC-CCCEEE
Confidence              234567888887766566654    5899999999999976 6779999999987 877653

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=89.97  E-value=0.77  Score=45.37  Aligned_cols=80  Identities=20%  Similarity=0.293  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHcCceEEEEecc--CCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHH-HcCCcchHHHHhc
Q 018446          198 DPVEIARSYEKGGAACLSILTD--EKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR-TKGADAVLLIAAV  271 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD--~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr-~~GADAVLLIaai  271 (355)
                      +..++|+.++++|+++|.|-.-  ...|.|   +++.+..++++ +++||+..-=|.++-++.+.. ..|||+|.+==++
T Consensus       149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~-~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~  227 (312)
T PRK10550        149 RKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQR-LTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGA  227 (312)
T ss_pred             HHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhh-cCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHh
Confidence            4679999999999999999543  345666   58889999986 899999999999999999987 5899999987778


Q ss_pred             CCHHHHH
Q 018446          272 LPDLDIR  278 (355)
Q Consensus       272 L~~~~L~  278 (355)
                      |.+-.+-
T Consensus       228 l~nP~lf  234 (312)
T PRK10550        228 LNIPNLS  234 (312)
T ss_pred             HhCcHHH
Confidence            8765443

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=89.95  E-value=2.1  Score=39.02  Aligned_cols=131  Identities=20%  Similarity=0.258  Sum_probs=78.5

Q ss_pred             ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec-------cCCCCCCCH--------HHHHHHHhcCCCCC
Q 018446          177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-------DEKYFKGSF--------ENLEAVRSAGVKCP  241 (355)
Q Consensus       177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT-------D~~fF~GS~--------edL~~VR~a~v~lP  241 (355)
                      ..+|+-+--.+|.        +..+.|+...++|+++|-+..       -..-|+|++        +-++.+|++ +.+|
T Consensus        55 ~p~~~qi~g~~~~--------~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~~~~  125 (231)
T cd02801          55 RPLIVQLGGSDPE--------TLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-VPIP  125 (231)
T ss_pred             CCEEEEEcCCCHH--------HHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-cCCC
Confidence            4577777544332        345677777788999998862       223466654        446677775 6688


Q ss_pred             eeccccc-c----CHHHHH-HHHHcCCcchHHHHh-----cCCHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccC
Q 018446          242 LLCKEFI-V----DAWQIY-YARTKGADAVLLIAA-----VLPDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIE  308 (355)
Q Consensus       242 VLrKDFI-I----dpyQI~-eAr~~GADAVLLIaa-----iL~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~  308 (355)
                      +-.|--. .    +..++. ....+|+|.|.+...     ..+..++..+.++.+..++-.+.  -++|.+++++++...
T Consensus       126 v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~  205 (231)
T cd02801         126 VTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQT  205 (231)
T ss_pred             EEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhc
Confidence            8776321 1    222332 344568988854332     12233555555555555554333  367888888888754


Q ss_pred             CCeEEEee
Q 018446          309 GIELIGIN  316 (355)
Q Consensus       309 ga~iIGIN  316 (355)
                      |++.|++-
T Consensus       206 gad~V~ig  213 (231)
T cd02801         206 GVDGVMIG  213 (231)
T ss_pred             CCCEEEEc
Confidence            78888775

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=89.81  E-value=1  Score=40.24  Aligned_cols=80  Identities=18%  Similarity=0.096  Sum_probs=59.2

Q ss_pred             CHHHHHHHHHHcCceEEEEe--ccCCCC--CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          198 DPVEIARSYEKGGAACLSIL--TDEKYF--KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL--TD~~fF--~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      ++.+..+ +.+.|++.+.+-  .+...|  ..+.+.++.+++. .++|+ .=|.+|.+-++.++..+|||++.+--++..
T Consensus       115 t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i-~~~GGI~~~~i~~~~~~Gad~vvvGsai~~  191 (202)
T cd04726         115 DPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKV-AVAGGITPDTLPEFKKAGADIVIVGRAITG  191 (202)
T ss_pred             CHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-cCCCE-EEECCcCHHHHHHHHhcCCCEEEEeehhcC
Confidence            5666766 666799987762  233444  3567888888874 56777 458999999999999999999999888876


Q ss_pred             HHHHHHH
Q 018446          274 DLDIRYM  280 (355)
Q Consensus       274 ~~~L~~L  280 (355)
                      .++.++.
T Consensus       192 ~~d~~~~  198 (202)
T cd04726         192 AADPAEA  198 (202)
T ss_pred             CCCHHHH
Confidence            6555443

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=89.71  E-value=3.7  Score=39.51  Aligned_cols=131  Identities=21%  Similarity=0.260  Sum_probs=81.3

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHc--CceEEEEeccCC-------CCCCCHHH----HHHHHhcCCCCCeec
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKG--GAACLSILTDEK-------YFKGSFEN----LEAVRSAGVKCPLLC  244 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~--GAaaISVLTD~~-------fF~GS~ed----L~~VR~a~v~lPVLr  244 (355)
                      .+|+-+--.+|.        +..+.|+.+++.  +|++|=++.--.       .++++.+.    +..+|++ +++||..
T Consensus        92 pl~~qi~g~~~~--------~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~-~~~pv~v  162 (300)
T TIGR01037        92 PLIASVYGSSVE--------EFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK-TDVPVFA  162 (300)
T ss_pred             cEEEEeecCCHH--------HHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEE
Confidence            367777433331        345667777765  388888765432       23345554    4566775 7899998


Q ss_pred             ccc--ccCHHHHHH-HHHcCCcchHHHHhc--------------------CC-H----HHHHHHHHHHHHcCCcEEE--E
Q 018446          245 KEF--IVDAWQIYY-ARTKGADAVLLIAAV--------------------LP-D----LDIRYMTKICKLLGLTALV--E  294 (355)
Q Consensus       245 KDF--IIdpyQI~e-Ar~~GADAVLLIaai--------------------L~-~----~~L~~L~~~A~~LGLeaLV--E  294 (355)
                      |==  .-+...+.+ +..+|+|+|.++-.+                    ++ +    -.+..+.++.+.+++..+.  -
T Consensus       163 Ki~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GG  242 (300)
T TIGR01037       163 KLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGG  242 (300)
T ss_pred             ECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECC
Confidence            821  112334443 567899999875221                    11 1    1234555666667876554  5


Q ss_pred             eCCHHHHHHHhccCCCeEEEeeCC
Q 018446          295 VHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       295 VH~~eELerAl~l~ga~iIGINNR  318 (355)
                      |+|.+++++++.. ||+.|+|---
T Consensus       243 I~s~~da~~~l~~-GAd~V~igr~  265 (300)
T TIGR01037       243 ITSFEDALEFLMA-GASAVQVGTA  265 (300)
T ss_pred             CCCHHHHHHHHHc-CCCceeecHH
Confidence            8999999999985 9999988543

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=89.69  E-value=0.99  Score=44.41  Aligned_cols=93  Identities=26%  Similarity=0.261  Sum_probs=69.2

Q ss_pred             ccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec-cCCCCC---CCHHHHHHHHhc
Q 018446          161 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-DEKYFK---GSFENLEAVRSA  236 (355)
Q Consensus       161 rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT-D~~fF~---GS~edL~~VR~a  236 (355)
                      ..+.+.++..    | ..|++.+    +|          .+.|+..++.||++|.|-- |..-..   ++++.|..++++
T Consensus        99 ~~~i~~lk~~----g-~~v~~~v----~s----------~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~  159 (307)
T TIGR03151        99 GKYIPRLKEN----G-VKVIPVV----AS----------VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDA  159 (307)
T ss_pred             HHHHHHHHHc----C-CEEEEEc----CC----------HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHH
Confidence            4477777653    3 4677766    22          3577888889999998732 222221   368888999985


Q ss_pred             CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          237 GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       237 ~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                       +++||+.-==|-++-++..|..+|||+|.+=-+.|-
T Consensus       160 -~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~  195 (307)
T TIGR03151       160 -VSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC  195 (307)
T ss_pred             -hCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence             899999998899999999999999999998666653

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=89.67  E-value=1.8  Score=40.78  Aligned_cols=92  Identities=16%  Similarity=0.148  Sum_probs=67.4

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCC-CCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEK-YFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~-fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      .||.++|+.|.+. |..|=+ .|-. -..|   +++.++.+++. +.+||..-==|=+.-++......|||.|.+=-+.+
T Consensus        30 ~dp~~~a~~~~~~-~~~l~i-vDldga~~g~~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~  106 (228)
T PRK04128         30 GDPVEIALRFSEY-VDKIHV-VDLDGAFEGKPKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF  106 (228)
T ss_pred             CCHHHHHHHHHHh-CCEEEE-EECcchhcCCcchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence            3899999999997 887777 7766 4557   56777788775 88999877777788889899999999988766666


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEe
Q 018446          273 PDLDIRYMTKICKLLGLTALVEV  295 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLVEV  295 (355)
                      +++-++   ++++.+| ...|-+
T Consensus       107 ~~~~l~---~~~~~~g-~ivvsl  125 (228)
T PRK04128        107 DLEFLE---KVTSEFE-GITVSL  125 (228)
T ss_pred             CHHHHH---HHHHHcC-CEEEEE
Confidence            654444   4455555 344433

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=89.66  E-value=1.6  Score=41.12  Aligned_cols=93  Identities=14%  Similarity=0.180  Sum_probs=68.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHH---cCCc
Q 018446          190 RGILREDFDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART---KGAD  263 (355)
Q Consensus       190 kG~I~~~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~---~GAD  263 (355)
                      .|+-....++.++++.+++.||..|-+..   |..+=+=+++.+..+++. +++||+.-==|-+.-++.+...   .|||
T Consensus       139 ~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~Gvd  217 (241)
T PRK14024        139 RGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVE  217 (241)
T ss_pred             CCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCcc
Confidence            46666677999999999999999887653   222322246778888885 8999999888888889888764   4999


Q ss_pred             chHHHHhcCCH-HHHHHHHHH
Q 018446          264 AVLLIAAVLPD-LDIRYMTKI  283 (355)
Q Consensus       264 AVLLIaaiL~~-~~L~~L~~~  283 (355)
                      +|++=-+++.. -.++++.++
T Consensus       218 gV~igra~~~g~~~~~~~~~~  238 (241)
T PRK14024        218 GAIVGKALYAGAFTLPEALAV  238 (241)
T ss_pred             EEEEeHHHHcCCCCHHHHHHH
Confidence            99886666543 245554444

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=89.53  E-value=2.5  Score=41.65  Aligned_cols=113  Identities=12%  Similarity=0.078  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHH----HHHHHHhcCCCCCeeccccccC---HHHHHHHHHcCCcchHHHHh
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSAGVKCPLLCKEFIVD---AWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~e----dL~~VR~a~v~lPVLrKDFIId---pyQI~eAr~~GADAVLLIaa  270 (355)
                      +| ++|.+-.++|+  +.+|.-. +  .+.+    .|.++|+. ++.|+=..-|.+.   .-|+......|++.|.+- .
T Consensus        24 ~~-~la~avs~aGg--lG~l~~~-~--~~~~~l~~~i~~~~~~-t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~-~   95 (307)
T TIGR03151        24 TG-SLAAAVSNAGG--LGIIGAG-N--APPDVVRKEIRKVKEL-TDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTG-A   95 (307)
T ss_pred             CH-HHHHHHHhCCC--cceeccc-c--CCHHHHHHHHHHHHHh-cCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEc-C
Confidence            44 46767776663  3333321 1  1344    34566663 4555311111111   346666788999998763 2


Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcc
Q 018446          271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETF  323 (355)
Q Consensus       271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tf  323 (355)
                      -.+.    .+++..+..|...+..|.+.++.+++.++ |++.|.+.+++-...
T Consensus        96 g~p~----~~i~~lk~~g~~v~~~v~s~~~a~~a~~~-GaD~Ivv~g~eagGh  143 (307)
T TIGR03151        96 GNPG----KYIPRLKENGVKVIPVVASVALAKRMEKA-GADAVIAEGMESGGH  143 (307)
T ss_pred             CCcH----HHHHHHHHcCCEEEEEcCCHHHHHHHHHc-CCCEEEEECcccCCC
Confidence            2332    47788888899999999999999999997 999999999866544

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=89.21  E-value=1.6  Score=41.55  Aligned_cols=72  Identities=31%  Similarity=0.283  Sum_probs=59.3

Q ss_pred             CCCCHHHHHHHHHHcCceEEEEe--c-cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHH-HcCCcchHH
Q 018446          195 EDFDPVEIARSYEKGGAACLSIL--T-DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR-TKGADAVLL  267 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISVL--T-D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr-~~GADAVLL  267 (355)
                      .+.++.++++.+++.||..|.+.  + |..+-+=+++.+..+++. +++||+.-==|-+.-.+.++. ..|+|+|++
T Consensus       150 ~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgViv  225 (258)
T PRK01033        150 LKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAA  225 (258)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence            46789999999999999999886  2 233444467888899886 899999998888988999987 799999864

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=89.17  E-value=2.9  Score=41.45  Aligned_cols=87  Identities=15%  Similarity=0.251  Sum_probs=60.0

Q ss_pred             CHHHHHHHHhcCCCCCee--ccccccCHHHHHHHHHcCCcchHHHHhcCC----HHHHHHHHHHHHHcCCcEEEEeCCHH
Q 018446          226 SFENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLP----DLDIRYMTKICKLLGLTALVEVHDER  299 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVL--rKDFIIdpyQI~eAr~~GADAVLLIaaiL~----~~~L~~L~~~A~~LGLeaLVEVH~~e  299 (355)
                      +++.|+.+++. +++||.  +-==|-+|-|+.++..+|||+|+..-++..    ....+.|.+.-..++     .-|-..
T Consensus       182 d~elLk~l~~~-~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~~-----~~~~~~  255 (283)
T cd04727         182 PYELVKETAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYD-----DPEILA  255 (283)
T ss_pred             CHHHHHHHHHh-cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhcC-----CHHHHH
Confidence            67889999985 789986  544455999999999999999999999983    334555655444422     122233


Q ss_pred             HHHHHhccCCCeEEEeeCCCCC
Q 018446          300 EMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       300 ELerAl~l~ga~iIGINNRdL~  321 (355)
                      |+..  .+ |-.+.|+|-+.|+
T Consensus       256 e~~~--~~-~~~m~~~~~~~~~  274 (283)
T cd04727         256 EVSE--GL-GEAMVGIDIASLK  274 (283)
T ss_pred             HHHc--cc-ccCCCCcccccCC
Confidence            3333  33 5568888877654

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=89.12  E-value=1.3  Score=45.42  Aligned_cols=181  Identities=14%  Similarity=0.111  Sum_probs=107.4

Q ss_pred             cHHHHHHHHHHHHHHHHhccCC-HHHHHHhhhc-CCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHH
Q 018446          125 NILEEIVWHKDVEVTQLKQRRP-LSMLKNALDN-APPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEI  202 (355)
Q Consensus       125 ~iLe~Iv~~K~~EV~~~k~~~p-l~~L~~~l~~-~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~i  202 (355)
                      .|.+-=....+.-+++.-...| ..++.+.-.. ..|-..|.. .+-    ...|-+|.=+-.-++.        +..++
T Consensus       124 ~~~~~ny~at~~ai~~a~~~~p~~~~~~~~~~~~~h~~~~~~~-~~~----~~~p~L~vALD~~~~~--------~A~~i  190 (391)
T PRK13307        124 KIYQYNYGATKLAIKRALEGFPDVDKVLYEKDRALHPIMGFKV-TRL----WDPPYLQVALDLPDLE--------EVERV  190 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHhhhhcccCCccccch-hhh----cccceEEEecCCCCHH--------HHHHH
Confidence            3444444445555555444444 4555443222 233333332 111    1235566655322221        34455


Q ss_pred             HHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHH--HHHHHHcCCcchHHHHhcCCHHHHHHH
Q 018446          203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQ--IYYARTKGADAVLLIAAVLPDLDIRYM  280 (355)
Q Consensus       203 A~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQ--I~eAr~~GADAVLLIaaiL~~~~L~~L  280 (355)
                      ++.....+..-+-|=|. -|....++-++.+|+.+.+.||...==+.|+-.  +..+..+|||.+.+.+.. +.+.+...
T Consensus       191 ~~~l~~~~~~~iKvG~~-L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea-~~~ti~~a  268 (391)
T PRK13307        191 LSQLPKSDHIIIEAGTP-LIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLA-PISTIEKA  268 (391)
T ss_pred             HHhcccccceEEEECHH-HHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccC-CHHHHHHH
Confidence            65554444445566665 356666899999998655667655333333333  457788999999888765 45579999


Q ss_pred             HHHHHHcCCcEEEE---eCCHHHHHHHhccCCCeEEEeeC-CCCC
Q 018446          281 TKICKLLGLTALVE---VHDEREMDRVLGIEGIELIGINN-RNLE  321 (355)
Q Consensus       281 ~~~A~~LGLeaLVE---VH~~eELerAl~l~ga~iIGINN-RdL~  321 (355)
                      ++.++++|+.+.|+   ++|..|.-+.+.. +.++|++-. .|-.
T Consensus       269 i~~akk~GikvgVD~lnp~tp~e~i~~l~~-~vD~Vllht~vdp~  312 (391)
T PRK13307        269 IHEAQKTGIYSILDMLNVEDPVKLLESLKV-KPDVVELHRGIDEE  312 (391)
T ss_pred             HHHHHHcCCEEEEEEcCCCCHHHHHHHhhC-CCCEEEEccccCCC
Confidence            99999999999998   6677666665553 788887763 4443

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=89.01  E-value=3.6  Score=41.32  Aligned_cols=113  Identities=8%  Similarity=0.106  Sum_probs=82.1

Q ss_pred             HHHHHHHHcC--ceEEEEeccCCCCCCCHHHHHHHHhcCCCCC-eeccccccCHHHHHHHHHcCCcchHHH--------H
Q 018446          201 EIARSYEKGG--AACLSILTDEKYFKGSFENLEAVRSAGVKCP-LLCKEFIVDAWQIYYARTKGADAVLLI--------A  269 (355)
Q Consensus       201 ~iA~~Ye~~G--AaaISVLTD~~fF~GS~edL~~VR~a~v~lP-VLrKDFIIdpyQI~eAr~~GADAVLLI--------a  269 (355)
                      +.+....++|  +++|-+-+--.+-..-++.++.+|+. .+.| |+.+.. .++-+......+|||+|..=        .
T Consensus        97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~-~p~~~vi~GnV-~t~e~a~~l~~aGad~I~V~~G~G~~~~t  174 (321)
T TIGR01306        97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTH-LPDSFVIAGNV-GTPEAVRELENAGADATKVGIGPGKVCIT  174 (321)
T ss_pred             HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHh-CCCCEEEEecC-CCHHHHHHHHHcCcCEEEECCCCCccccc
Confidence            4555666667  68877766555555667788889885 6667 555554 79999999999999998632        0


Q ss_pred             h-----cCCHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEee
Q 018446          270 A-----VLPDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       270 a-----iL~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGIN  316 (355)
                      +     -.++-++..+.+.+....+..+.  -|.+-.|+-+|+.+ ||+.+++-
T Consensus       175 r~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~-GAd~Vmig  227 (321)
T TIGR01306       175 KIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF-GASMVMIG  227 (321)
T ss_pred             eeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHc-CCCEEeec
Confidence            0     01223677888888888766554  48999999999997 99988875

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=88.92  E-value=1  Score=42.86  Aligned_cols=76  Identities=24%  Similarity=0.310  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHcCceEEEEec-------c-----------CCCCCC------CHHHHHHHHhcCC--CCCeeccccccCH
Q 018446          198 DPVEIARSYEKGGAACLSILT-------D-----------EKYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDA  251 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT-------D-----------~~fF~G------S~edL~~VR~a~v--~lPVLrKDFIIdp  251 (355)
                      +..++|+..+++||++|.+-.       +           ..++.|      +++.+..+|+. +  ++||+.-==|-++
T Consensus       177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~-~~~~ipiia~GGI~~~  255 (289)
T cd02810         177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAAR-LQLDIPIIGVGGIDSG  255 (289)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHh-cCCCCCEEEECCCCCH
Confidence            467899999999999999841       1           011222      36778888885 6  8999998888899


Q ss_pred             HHHHHHHHcCCcchHHHHhcCCH
Q 018446          252 WQIYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       252 yQI~eAr~~GADAVLLIaaiL~~  274 (355)
                      -++.+...+|||+|.+--+++.+
T Consensus       256 ~da~~~l~~GAd~V~vg~a~~~~  278 (289)
T cd02810         256 EDVLEMLMAGASAVQVATALMWD  278 (289)
T ss_pred             HHHHHHHHcCccHheEcHHHHhc
Confidence            99999999999999887666643

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=88.91  E-value=1.8  Score=41.87  Aligned_cols=80  Identities=18%  Similarity=0.293  Sum_probs=57.2

Q ss_pred             CCHHHHHHHHhcCCCCCee-ccccccCHHH------HHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe--
Q 018446          225 GSFENLEAVRSAGVKCPLL-CKEFIVDAWQ------IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV--  295 (355)
Q Consensus       225 GS~edL~~VR~a~v~lPVL-rKDFIIdpyQ------I~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV--  295 (355)
                      .-++.++++|+...++|++ +--+= .-||      +.+++.+|+|++|+.  =|+.++..++.+.|+++||+.+.=|  
T Consensus        75 ~~~~~~~~~r~~~~~~p~vlm~Y~N-~i~~~G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap  151 (258)
T PRK13111         75 DVFELVREIREKDPTIPIVLMTYYN-PIFQYGVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAP  151 (258)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeccc-HHhhcCHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence            5578888898434788944 33221 1133      889999999998873  4667899999999999999998722  


Q ss_pred             -CCHHHHHHHhcc
Q 018446          296 -HDEREMDRVLGI  307 (355)
Q Consensus       296 -H~~eELerAl~l  307 (355)
                       .+.+.++.....
T Consensus       152 ~t~~eri~~i~~~  164 (258)
T PRK13111        152 TTTDERLKKIASH  164 (258)
T ss_pred             CCCHHHHHHHHHh
Confidence             335667776654

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=88.62  E-value=1.3  Score=44.82  Aligned_cols=121  Identities=18%  Similarity=0.202  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC------CCCCC----CHHH----HHHHHhcCCCCCeecc---ccccCHHHHHH-HHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDE------KYFKG----SFEN----LEAVRSAGVKCPLLCK---EFIVDAWQIYY-ART  259 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~------~fF~G----S~ed----L~~VR~a~v~lPVLrK---DFIIdpyQI~e-Ar~  259 (355)
                      +..++|+..++.||++|-++.--      +-++.    ..+.    ++.+++. +++||..|   |+- +.-.+.+ +..
T Consensus       114 ~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl~p~~~-~~~~~a~~~~~  191 (420)
T PRK08318        114 EWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKLTPNIT-DIREPARAAKR  191 (420)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEcCCCcc-cHHHHHHHHHH
Confidence            46688888899999999887432      21222    2333    4555664 78999877   332 2334444 567


Q ss_pred             cCCcchHHHHhcCC-------------------------HH-----HHHHHHHHHHHcCC--cEEE---EeCCHHHHHHH
Q 018446          260 KGADAVLLIAAVLP-------------------------DL-----DIRYMTKICKLLGL--TALV---EVHDEREMDRV  304 (355)
Q Consensus       260 ~GADAVLLIaaiL~-------------------------~~-----~L~~L~~~A~~LGL--eaLV---EVH~~eELerA  304 (355)
                      +|||+|.+|-.+.+                         ..     .|+.+.++++.++.  -+|+   -|+|.+|+.+.
T Consensus       192 ~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~  271 (420)
T PRK08318        192 GGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEF  271 (420)
T ss_pred             CCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHH
Confidence            89999996433322                         11     25555566665532  1333   58999999999


Q ss_pred             hccCCCeEEEeeCCCCC
Q 018446          305 LGIEGIELIGINNRNLE  321 (355)
Q Consensus       305 l~l~ga~iIGINNRdL~  321 (355)
                      +.+ ||+.|+|--=.+.
T Consensus       272 i~a-GA~~Vqi~ta~~~  287 (420)
T PRK08318        272 ILL-GAGTVQVCTAAMQ  287 (420)
T ss_pred             HHh-CCChheeeeeecc
Confidence            986 9999988655443

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=88.57  E-value=3.2  Score=39.40  Aligned_cols=127  Identities=19%  Similarity=0.225  Sum_probs=80.4

Q ss_pred             CCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc---cccc--------CHHHHHHHHHcCCc
Q 018446          195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK---EFIV--------DAWQIYYARTKGAD  263 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK---DFII--------dpyQI~eAr~~GAD  263 (355)
                      ...|+.++.+.-.++|++|+.|.  +    |.........  ..+++++.+   .|-.        --.++.+|...|||
T Consensus        34 ~~~~~~~~~~~a~~~~~~~v~~~--p----~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~  105 (258)
T TIGR01949        34 GLVDIRKTVNEVAEGGADAVLLH--K----GIVRRGHRGY--GKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGAD  105 (258)
T ss_pred             CcCCHHHHHHHHHhcCCCEEEeC--c----chhhhccccc--CCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCC
Confidence            45688889998888888876654  3    2222221111  134454433   3322        11458899999999


Q ss_pred             chHHHHhcCCH------HHHHHHHHHHHHcCCcEEEEeC---------CHHHH----HHHhccCCCeEEEeeCCCCCccc
Q 018446          264 AVLLIAAVLPD------LDIRYMTKICKLLGLTALVEVH---------DEREM----DRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       264 AVLLIaaiL~~------~~L~~L~~~A~~LGLeaLVEVH---------~~eEL----erAl~l~ga~iIGINNRdL~Tfe  324 (355)
                      +|-+-....+.      +++..+.+.|++.|+-.+|.++         +.+++    +.+.++ ||+.|++.      |.
T Consensus       106 ~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~-GADyikt~------~~  178 (258)
T TIGR01949       106 AVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAEL-GADIVKTP------YT  178 (258)
T ss_pred             EEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHH-CCCEEecc------CC
Confidence            99887765532      2456667788889998887443         33343    334454 99999985      45


Q ss_pred             cChhhHHhhhcc
Q 018446          325 VDNSNTKKLLEG  336 (355)
Q Consensus       325 vDl~~t~~L~~~  336 (355)
                      .+++...++.+.
T Consensus       179 ~~~~~l~~~~~~  190 (258)
T TIGR01949       179 GDIDSFRDVVKG  190 (258)
T ss_pred             CCHHHHHHHHHh
Confidence            677777777653

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=88.56  E-value=1.5  Score=44.61  Aligned_cols=108  Identities=20%  Similarity=0.228  Sum_probs=74.0

Q ss_pred             CHHHHHHHHHHcCceEEEEecc---CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446          198 DPVEIARSYEKGGAACLSILTD---EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD---~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~  274 (355)
                      ++.+.++.+.+.|++-|.+-.-   ..+-...++.|+.+++. .++||+. ++.|.+-.+.++..+|||+|.+.-++...
T Consensus       119 t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~-~~iPI~a-~GGI~~~n~~~~l~aGAdgv~vGsaI~~~  196 (430)
T PRK07028        119 DPVKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEE-VSIPIAV-AGGLDAETAAKAVAAGADIVIVGGNIIKS  196 (430)
T ss_pred             CHHHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhh-CCCcEEE-ECCCCHHHHHHHHHcCCCEEEEChHHcCC
Confidence            3556677888889999976421   11113557899999875 7899866 88999999999999999999999888875


Q ss_pred             HHHHHHH----HHHHH---cCCcEEEEeCCHHHHHHHhcc
Q 018446          275 LDIRYMT----KICKL---LGLTALVEVHDEREMDRVLGI  307 (355)
Q Consensus       275 ~~L~~L~----~~A~~---LGLeaLVEVH~~eELerAl~l  307 (355)
                      ++.+..+    +..++   ..++-+-+--+.+.+++...+
T Consensus       197 ~d~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~  236 (430)
T PRK07028        197 ADVTEAARKIREAIDSGKPVKIDKFKKSLDEEIREIFMQV  236 (430)
T ss_pred             CCHHHHHHHHHHHHhccCCccccccccCCCHHHHHHhcCC
Confidence            4443333    33322   334445555566666665444

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=88.55  E-value=2  Score=42.89  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC------CCCCCC-HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDE------KYFKGS-FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIA  269 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~------~fF~GS-~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIa  269 (355)
                      |..++++..++.|++.|+|-.-.      .++.|. .+..+.+|++ +++||+.---|.++-+..++...| ||.|.+==
T Consensus       228 e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR  306 (337)
T PRK13523        228 DYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFIGR  306 (337)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhH
Confidence            34588899999999999985422      234453 5666888886 899999999999999999999987 99999877


Q ss_pred             hcCCHHHH
Q 018446          270 AVLPDLDI  277 (355)
Q Consensus       270 aiL~~~~L  277 (355)
                      .++.+.++
T Consensus       307 ~~iadP~~  314 (337)
T PRK13523        307 ELLRNPYF  314 (337)
T ss_pred             HHHhCccH
Confidence            77766555

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=88.53  E-value=0.35  Score=50.27  Aligned_cols=91  Identities=22%  Similarity=0.234  Sum_probs=57.5

Q ss_pred             EeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE-------eccCCCCC---CCHHHHHHHHhc--CCCCCeecccc
Q 018446          180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-------LTDEKYFK---GSFENLEAVRSA--GVKCPLLCKEF  247 (355)
Q Consensus       180 IAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV-------LTD~~fF~---GS~edL~~VR~a--~v~lPVLrKDF  247 (355)
                      |.++|+..|..-++-.+---.+-|+...++||++|.|       +|-..+-+   ..++-+..++++  ...+||+.-==
T Consensus       260 i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGG  339 (486)
T PRK05567        260 VREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGG  339 (486)
T ss_pred             HHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence            3345555554322322222235666777889999954       44443211   124555555542  14689999999


Q ss_pred             ccCHHHHHHHHHcCCcchHHHHh
Q 018446          248 IVDAWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       248 IIdpyQI~eAr~~GADAVLLIaa  270 (355)
                      |-.+.+|..|.++|||+|.+=-+
T Consensus       340 i~~~~di~kAla~GA~~v~~G~~  362 (486)
T PRK05567        340 IRYSGDIAKALAAGASAVMLGSM  362 (486)
T ss_pred             CCCHHHHHHHHHhCCCEEEECcc
Confidence            99999999999999999986333

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=88.39  E-value=0.33  Score=49.12  Aligned_cols=89  Identities=19%  Similarity=0.166  Sum_probs=60.3

Q ss_pred             EeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEE-------EeccCCCCC---CCHHHHHHHHhc--CCCCCeecccc
Q 018446          180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLS-------ILTDEKYFK---GSFENLEAVRSA--GVKCPLLCKEF  247 (355)
Q Consensus       180 IAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaIS-------VLTD~~fF~---GS~edL~~VR~a--~v~lPVLrKDF  247 (355)
                      |..+|+.-|..-+|..+.--.+-|+...++||++|=       ++|-..--+   ..+.-|..++++  ...+||+..-=
T Consensus       141 ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGG  220 (343)
T TIGR01305       141 VKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGG  220 (343)
T ss_pred             HHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence            344455555444444433333577788889999984       566554332   245555555443  23689999999


Q ss_pred             ccCHHHHHHHHHcCCcchHHH
Q 018446          248 IVDAWQIYYARTKGADAVLLI  268 (355)
Q Consensus       248 IIdpyQI~eAr~~GADAVLLI  268 (355)
                      |-.+-.|..|.++|||+|.+=
T Consensus       221 Ir~~gDI~KALA~GAd~VMlG  241 (343)
T TIGR01305       221 CTCPGDVAKAFGAGADFVMLG  241 (343)
T ss_pred             cCchhHHHHHHHcCCCEEEEC
Confidence            999999999999999999874

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=88.36  E-value=1.1  Score=41.12  Aligned_cols=109  Identities=23%  Similarity=0.261  Sum_probs=70.5

Q ss_pred             HHHHHHcCceEEEEeccCCCC-CCC----HHHHHHHHhcCCCCCe--------eccccccCHHHHHHHHHcCCcchHHHH
Q 018446          203 ARSYEKGGAACLSILTDEKYF-KGS----FENLEAVRSAGVKCPL--------LCKEFIVDAWQIYYARTKGADAVLLIA  269 (355)
Q Consensus       203 A~~Ye~~GAaaISVLTD~~fF-~GS----~edL~~VR~a~v~lPV--------LrKDFIIdpyQI~eAr~~GADAVLLIa  269 (355)
                      ++.-.+.||++|.|.-.-.++ .|.    .++|..++++...+|+        |..|.|..-.++  |..+|||-|=--.
T Consensus        75 ve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ri--a~e~GaD~IKTsT  152 (203)
T cd00959          75 AREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEI--AIEAGADFIKTST  152 (203)
T ss_pred             HHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHH--HHHhCCCEEEcCC
Confidence            344556799999999887665 443    4577777775224564        333444444444  6788999776653


Q ss_pred             hcC----CHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEe
Q 018446          270 AVL----PDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       270 aiL----~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGI  315 (355)
                      ...    +.++.+.|.+.+. ..+-..+  =++|.+++...+.+ |++-||.
T Consensus       153 G~~~~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~-g~~riG~  202 (203)
T cd00959         153 GFGPGGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEA-GATRIGT  202 (203)
T ss_pred             CCCCCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHh-ChhhccC
Confidence            332    2356666666665 3344444  48899999988887 8888875

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=88.29  E-value=9.8  Score=37.25  Aligned_cols=97  Identities=16%  Similarity=0.229  Sum_probs=73.1

Q ss_pred             CC-CCeecc-ccccCHHHHHHHHHcCCcchHHHHhcCCHHH----HHHHHHHHHHcCCcEEEE-----------------
Q 018446          238 VK-CPLLCK-EFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVE-----------------  294 (355)
Q Consensus       238 v~-lPVLrK-DFIIdpyQI~eAr~~GADAVLLIaaiL~~~~----L~~L~~~A~~LGLeaLVE-----------------  294 (355)
                      .+ +||... |=.-+.-.|.+|...|.+.|.+=.+-|+.++    .+++.++|+.+|..  ||                 
T Consensus        72 ~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~--Ve~ElG~~gg~ed~~~g~~  149 (282)
T TIGR01859        72 MSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVS--VEAELGTLGGIEDGVDEKE  149 (282)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCE--EEEeeCCCcCccccccccc
Confidence            45 886555 7666677899999999999999999998764    45678899998875  44                 


Q ss_pred             --eCCHHHHHHHhccCCCeEEEeeCCCCC-cc----ccChhhHHhhhcc
Q 018446          295 --VHDEREMDRVLGIEGIELIGINNRNLE-TF----EVDNSNTKKLLEG  336 (355)
Q Consensus       295 --VH~~eELerAl~l~ga~iIGINNRdL~-Tf----evDl~~t~~L~~~  336 (355)
                        .||.+|+.++....|++.|++.--+.+ ++    .+|++.-.++.+.
T Consensus       150 ~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~  198 (282)
T TIGR01859       150 AELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKEL  198 (282)
T ss_pred             cccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHH
Confidence              789999999997239999998754444 33    4566666666543

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=88.04  E-value=7.6  Score=37.19  Aligned_cols=125  Identities=19%  Similarity=0.241  Sum_probs=77.8

Q ss_pred             CCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhc-CCCCCeecc-----ccc------cCHHHHHHHHHcCC
Q 018446          195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-GVKCPLLCK-----EFI------VDAWQIYYARTKGA  262 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a-~v~lPVLrK-----DFI------IdpyQI~eAr~~GA  262 (355)
                      ...|+.++.+.-.++|++|+-|.  +    |   .+...++. ..+.|++-+     .|.      .--.++.+|...||
T Consensus        37 ~~~d~~~~~~~a~~~~~~av~v~--~----~---~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Ga  107 (267)
T PRK07226         37 GLVDIRDTVNKVAEGGADAVLMH--K----G---LARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGA  107 (267)
T ss_pred             CcCCHHHHHHHHHhcCCCEEEeC--H----h---HHhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCC
Confidence            45588889888888888776654  2    2   23332221 123444331     221      12346889999999


Q ss_pred             cchHHHHhcCCH------HHHHHHHHHHHHcCCcEEEEe----------CCHHH----HHHHhccCCCeEEEeeCCCCCc
Q 018446          263 DAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEV----------HDERE----MDRVLGIEGIELIGINNRNLET  322 (355)
Q Consensus       263 DAVLLIaaiL~~------~~L~~L~~~A~~LGLeaLVEV----------H~~eE----LerAl~l~ga~iIGINNRdL~T  322 (355)
                      |+|-+...+.+.      +++..+.+.|++.|+-.+|.+          ++.++    ...+.++ ||++|=.+      
T Consensus       108 d~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~-GAD~vKt~------  180 (267)
T PRK07226        108 DAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAEL-GADIVKTN------  180 (267)
T ss_pred             CEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHH-CCCEEeeC------
Confidence            999887666542      256667788899999988862          23444    3445555 99999665      


Q ss_pred             cccChhhHHhhhc
Q 018446          323 FEVDNSNTKKLLE  335 (355)
Q Consensus       323 fevDl~~t~~L~~  335 (355)
                      |.-|++...++.+
T Consensus       181 ~~~~~~~l~~~~~  193 (267)
T PRK07226        181 YTGDPESFREVVE  193 (267)
T ss_pred             CCCCHHHHHHHHH
Confidence            3345665556554

>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins

Probab=88.03  E-value=11  Score=35.75  Aligned_cols=132  Identities=17%  Similarity=0.140  Sum_probs=78.4

Q ss_pred             cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCC-CH-HHHHHHHhcCCC
Q 018446          162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKG-SF-ENLEAVRSAGVK  239 (355)
Q Consensus       162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G-S~-edL~~VR~a~v~  239 (355)
                      .|.+.|....   +...+..|+|  +|..+      -...+.....+.|..      +.-+|++ +. +.|..+|+...+
T Consensus       109 tL~evl~~~~---~~~~l~iEiK--~~~~~------~~~~v~~~l~~~~~~------~~v~i~SF~~~~~l~~~~~~~~~  171 (265)
T cd08564         109 TLEDVLVTFK---DKLKYNIELK--GREVG------LGERVLNLVEKYGMI------LQVHFSSFLHYDRLDLLKALRPN  171 (265)
T ss_pred             CHHHHHHHhc---cCcEEEEEeC--CCchh------HHHHHHHHHHHcCCC------CCEEEEecCchhHHHHHHHhCcC
Confidence            4555554432   2467999999  44321      123566666666642      2223222 22 445555553222


Q ss_pred             ---CCe--ecccccc-CHH-HHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-----eCCHHHHHHHhcc
Q 018446          240 ---CPL--LCKEFIV-DAW-QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-----VHDEREMDRVLGI  307 (355)
Q Consensus       240 ---lPV--LrKDFII-dpy-QI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-----VH~~eELerAl~l  307 (355)
                         +|+  |..+... ... .+..++..|+++|-+-...+.    ..+++.++..|+.+.+=     +.+.+++++.+++
T Consensus       172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~~~  247 (265)
T cd08564         172 KLNVPIALLFNEVKSPSPLDFLEQAKYYNATWVNFSYDFWT----EEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYLEL  247 (265)
T ss_pred             CCCceEEEEecCCCCcccccHHHHHHhcCCceeeechhhhh----HHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHHHc
Confidence               443  4443321 111 245567789998876555554    46889999999999887     5779999999987


Q ss_pred             CCCeEEEe
Q 018446          308 EGIELIGI  315 (355)
Q Consensus       308 ~ga~iIGI  315 (355)
                       |++.|--
T Consensus       248 -GvdgiiT  254 (265)
T cd08564         248 -GVDCICP  254 (265)
T ss_pred             -CCCEEEc
Confidence             8875543

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>PRK09856 fructoselysine 3-epimerase; Provisional

Probab=87.92  E-value=4.4  Score=37.81  Aligned_cols=105  Identities=10%  Similarity=0.062  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC-----CCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          198 DPVEIARSYEKGGAACLSILTDE-----KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~-----~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      +..++.+..++.|-...|+.+..     .++.++-+..+...+.             -.-.|..|..+||..|.+-....
T Consensus        48 ~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~-------------~~~~i~~a~~lGa~~i~~~~~~~  114 (275)
T PRK09856         48 GIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDM-------------IKLAMDMAKEMNAGYTLISAAHA  114 (275)
T ss_pred             HHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHH-------------HHHHHHHHHHhCCCEEEEcCCCC
Confidence            56778888888898887876542     2233443221111111             11356678899999886643321


Q ss_pred             ----CH--------HHHHHHHHHHHHcCCcEEEEeC---------CHHHHHHHhccCCCeEEEe
Q 018446          273 ----PD--------LDIRYMTKICKLLGLTALVEVH---------DEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       273 ----~~--------~~L~~L~~~A~~LGLeaLVEVH---------~~eELerAl~l~ga~iIGI  315 (355)
                          +.        +.|++|.++|.+.|+...+|-|         |.+++.+.++.-+-+-+|+
T Consensus       115 ~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~~~~~~~v~~  178 (275)
T PRK09856        115 GYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALALVPSPRLFS  178 (275)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHHHHHHHHHcCCCccee
Confidence                11        2489999999999999999976         4688888876434334554

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=87.91  E-value=3.7  Score=43.82  Aligned_cols=104  Identities=22%  Similarity=0.193  Sum_probs=71.1

Q ss_pred             CCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCC---C---HHHHHHHHhcCCCCCeecccccc---C--------HHH
Q 018446          191 GILREDFDPVEIARSYEKGGAACLSILTDEKYFKG---S---FENLEAVRSAGVKCPLLCKEFIV---D--------AWQ  253 (355)
Q Consensus       191 G~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S---~edL~~VR~a~v~lPVLrKDFII---d--------pyQ  253 (355)
                      +.++.--||+++|+.|.+.||+-|-++==.-++.|   .   ++-++++.+. +.+|+--===|=   |        --|
T Consensus       261 ~~~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~-~~ip~~vGGGIr~~~d~~~~~~~~~e~  339 (538)
T PLN02617        261 REVRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASEN-VFVPLTVGGGIRDFTDANGRYYSSLEV  339 (538)
T ss_pred             cCCCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhh-CCCCEEEcCCccccccccccccchHHH
Confidence            34666679999999999999999988755544443   3   4556666664 788975322222   2        267


Q ss_pred             HHHHHHcCCcchHHHHhcCCHH----------HHHHHHHHHHHcCCc-EEEEe
Q 018446          254 IYYARTKGADAVLLIAAVLPDL----------DIRYMTKICKLLGLT-ALVEV  295 (355)
Q Consensus       254 I~eAr~~GADAVLLIaaiL~~~----------~L~~L~~~A~~LGLe-aLVEV  295 (355)
                      +.....+|||-|.+-.+++.+.          .-.-+-+.++.+|=+ .+|-+
T Consensus       340 ~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsi  392 (538)
T PLN02617        340 ASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSI  392 (538)
T ss_pred             HHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEE
Confidence            8888899999999977776532          123455777888877 44433

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=87.68  E-value=1.1  Score=40.98  Aligned_cols=72  Identities=31%  Similarity=0.320  Sum_probs=52.5

Q ss_pred             HHHHHHHHcCceEEEEecc-C--CC--C-CCCHHHHHHHHhcCCCCCeeccccccCH-HHHHHHHHcCCcchHHHHhcCC
Q 018446          201 EIARSYEKGGAACLSILTD-E--KY--F-KGSFENLEAVRSAGVKCPLLCKEFIVDA-WQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD-~--~f--F-~GS~edL~~VR~a~v~lPVLrKDFIIdp-yQI~eAr~~GADAVLLIaaiL~  273 (355)
                      +.++...+.||+.|-+..- .  ..  + ...++.+..+++. +++||+. .+.|.. .++.++..+|||+|.+.-+++.
T Consensus       113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~-~~~Pvi~-~GGI~~~~~v~~~l~~GadgV~vgS~l~~  190 (236)
T cd04730         113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA-VDIPVIA-AGGIADGRGIAAALALGADGVQMGTRFLA  190 (236)
T ss_pred             HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH-hCCCEEE-ECCCCCHHHHHHHHHcCCcEEEEchhhhc
Confidence            4566677789998765321 0  00  1 1246788888885 7899997 888876 8999999999999998877764


Q ss_pred             H
Q 018446          274 D  274 (355)
Q Consensus       274 ~  274 (355)
                      .
T Consensus       191 ~  191 (236)
T cd04730         191 T  191 (236)
T ss_pred             C
Confidence            3

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=87.63  E-value=5.2  Score=37.61  Aligned_cols=138  Identities=22%  Similarity=0.185  Sum_probs=84.6

Q ss_pred             CCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH
Q 018446          193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA  269 (355)
Q Consensus       193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa  269 (355)
                      +...-||.++|+.|.+.||.-|-|.==.... |.   ++.++.+.+. +.+|+.--==|=+.-++.+....|||.|.+-.
T Consensus        31 ~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~~-~~~~n~~~i~~i~~~-~~~~v~vgGGir~~edv~~~l~~Ga~~viigt  108 (233)
T cd04723          31 LCSTSDPLDVARAYKELGFRGLYIADLDAIM-GRGDNDEAIRELAAA-WPLGLWVDGGIRSLENAQEWLKRGASRVIVGT  108 (233)
T ss_pred             cccCCCHHHHHHHHHHCCCCEEEEEeCcccc-CCCccHHHHHHHHHh-CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence            3434599999999999999887764322222 44   4455555553 67897654444556889999999999998877


Q ss_pred             hcCCHHHHHHHHHHHHHcCC-cEEEEeC-------------CHHHHHHHhccCCCe-EEEee-CCCCCccccChhhHHhh
Q 018446          270 AVLPDLDIRYMTKICKLLGL-TALVEVH-------------DEREMDRVLGIEGIE-LIGIN-NRNLETFEVDNSNTKKL  333 (355)
Q Consensus       270 aiL~~~~L~~L~~~A~~LGL-eaLVEVH-------------~~eELerAl~l~ga~-iIGIN-NRdL~TfevDl~~t~~L  333 (355)
                      ..+.+ +  -+.+.++.+|= ..+|-+.             +..|+-+.+... +. ++-.+ +++-.-...|++...++
T Consensus       109 ~~~~~-~--~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i  184 (233)
T cd04723         109 ETLPS-D--DDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQGPDLELLERL  184 (233)
T ss_pred             eeccc-h--HHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHH
Confidence            77765 3  34566677664 3344333             245554444332 33 33222 23444455677777777


Q ss_pred             hcc
Q 018446          334 LEG  336 (355)
Q Consensus       334 ~~~  336 (355)
                      ...
T Consensus       185 ~~~  187 (233)
T cd04723         185 AAR  187 (233)
T ss_pred             HHh
Confidence            654

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=87.60  E-value=12  Score=35.18  Aligned_cols=65  Identities=9%  Similarity=-0.020  Sum_probs=42.4

Q ss_pred             HHHHHHHHcCCcchHHHHhcC----C--------HHHHHHHHHHHHHcCCcEEEEeC------CHHHHHHHhccCCCeEE
Q 018446          252 WQIYYARTKGADAVLLIAAVL----P--------DLDIRYMTKICKLLGLTALVEVH------DEREMDRVLGIEGIELI  313 (355)
Q Consensus       252 yQI~eAr~~GADAVLLIaaiL----~--------~~~L~~L~~~A~~LGLeaLVEVH------~~eELerAl~l~ga~iI  313 (355)
                      -.|..|+.+|+..|.+-..-.    +        .+.|+++.++|.+.|+...+|.|      +.+++-+.++.-+.+-+
T Consensus       103 ~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v~~~~l  182 (283)
T PRK13209        103 KAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAHYLNSPWF  182 (283)
T ss_pred             HHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHhCCCcc
Confidence            356778888888765421110    0        23678899999999999999998      55666665543233455


Q ss_pred             Eee
Q 018446          314 GIN  316 (355)
Q Consensus       314 GIN  316 (355)
                      |++
T Consensus       183 gl~  185 (283)
T PRK13209        183 QLY  185 (283)
T ss_pred             ceE
Confidence            554

>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins

Probab=87.59  E-value=5.9  Score=37.47  Aligned_cols=120  Identities=11%  Similarity=0.060  Sum_probs=73.5

Q ss_pred             ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHH
Q 018446          177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY  256 (355)
Q Consensus       177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~e  256 (355)
                      ..+..|+|.... ....... -...+.+.+.+.|..      +...|.-++..+..+|+....+++...   . ......
T Consensus       128 ~~l~iEiK~~~~-~~~~~~~-~~~~v~~~l~~~~~~------~~~v~~s~~~~~~~~~~~~p~~~~~~~---~-~~~~~~  195 (252)
T cd08574         128 KSVIFDLRRPPP-NHPYYQS-YVNITLDTILASGIP------QHQVFWLPDEYRALVRKVAPGFQQVSG---R-KLPVES  195 (252)
T ss_pred             CeEEEEecCCcc-cCccHHH-HHHHHHHHHHHcCCC------cccEEEccHHHHHHHHHHCCCCeEeec---c-ccchHH
Confidence            469999985321 1000001 113466666666642      111122244557788875456665531   1 112223


Q ss_pred             HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEE
Q 018446          257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELI  313 (355)
Q Consensus       257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iI  313 (355)
                      ....||+++-.-...+++    .+++.+++.|+.+.+= |.+.+++++.+++ |++-|
T Consensus       196 ~~~~~~~~~~~~~~~~~~----~~v~~~~~~g~~v~~WTVn~~~~~~~l~~~-GVdgI  248 (252)
T cd08574         196 LRENGISRLNLEYSQLSA----QEIREYSKANISVNLYVVNEPWLYSLLWCS-GVQSV  248 (252)
T ss_pred             HHhcCCeEEccCcccCCH----HHHHHHHHCCCEEEEEccCCHHHHHHHHHc-CCCEE
Confidence            345799987776666764    5899999999999885 7889999999987 87655

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo

>PRK12677 xylose isomerase; Provisional

Probab=87.50  E-value=7.9  Score=39.47  Aligned_cols=129  Identities=18%  Similarity=0.228  Sum_probs=73.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCC-CCCCH----HHHHHHH----hcCCCCCeeccccccC--------
Q 018446          188 PSRGILREDFDPVEIARSYEKGGAACLSILTDEKY-FKGSF----ENLEAVR----SAGVKCPLLCKEFIVD--------  250 (355)
Q Consensus       188 PSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~f-F~GS~----edL~~VR----~a~v~lPVLrKDFIId--------  250 (355)
                      |-.+-.++..|+++....+.+.|+.+|.+.-+.-+ |.-+.    ..+..++    +.+..++.++-.+.-+        
T Consensus        22 ~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~l  101 (384)
T PRK12677         22 PFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAF  101 (384)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCcC
Confidence            44444567778888888888888888877543222 21111    1233332    3344445443322111        


Q ss_pred             ----H-----------HHHHHHHHcCCcchHHHHhcCCH----------------HHHHHHHHHHHHc--CCcEEEEeC-
Q 018446          251 ----A-----------WQIYYARTKGADAVLLIAAVLPD----------------LDIRYMTKICKLL--GLTALVEVH-  296 (355)
Q Consensus       251 ----p-----------yQI~eAr~~GADAVLLIaaiL~~----------------~~L~~L~~~A~~L--GLeaLVEVH-  296 (355)
                          +           --|..|+.+||+.|.+-....+.                +-|..+.++|.+.  |+..++|-+ 
T Consensus       102 ts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp  181 (384)
T PRK12677        102 TSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKP  181 (384)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCC
Confidence                1           23578999999998886554311                3455778889884  498898875 


Q ss_pred             ----------CHHHHHHHhccCC-CeEEEee
Q 018446          297 ----------DEREMDRVLGIEG-IELIGIN  316 (355)
Q Consensus       297 ----------~~eELerAl~l~g-a~iIGIN  316 (355)
                                |.+++...++.-| ...+|||
T Consensus       182 ~ep~~~~~l~t~~~al~li~~lg~~~~vGv~  212 (384)
T PRK12677        182 NEPRGDILLPTVGHALAFIATLEHPEMVGLN  212 (384)
T ss_pred             CCCCCCeeeCCHHHHHHHHHHhCCCccEEEe
Confidence                      3444444443212 2367766

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=87.47  E-value=2.2  Score=40.56  Aligned_cols=76  Identities=20%  Similarity=0.131  Sum_probs=58.3

Q ss_pred             HHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccC-------HHHHHHHHHcCCcchHHHHhcCCHH
Q 018446          203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD-------AWQIYYARTKGADAVLLIAAVLPDL  275 (355)
Q Consensus       203 A~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIId-------pyQI~eAr~~GADAVLLIaaiL~~~  275 (355)
                      ++.+.+.||+.|-+-     |.|+.+.|+.+.+. ..+||+.= =.|.       .-.+.++..+||+++-.+-+++..+
T Consensus       162 ~~~a~~~GADyikt~-----~~~~~~~l~~~~~~-~~iPVva~-GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~  234 (258)
T TIGR01949       162 ARLGAELGADIVKTP-----YTGDIDSFRDVVKG-CPAPVVVA-GGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHD  234 (258)
T ss_pred             HHHHHHHCCCEEecc-----CCCCHHHHHHHHHh-CCCcEEEe-cCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCC
Confidence            567778999999852     67899999999874 78999773 2243       5567888899999999999999776


Q ss_pred             HHHHHHHHHH
Q 018446          276 DIRYMTKICK  285 (355)
Q Consensus       276 ~L~~L~~~A~  285 (355)
                      +....++..+
T Consensus       235 dp~~~~~~l~  244 (258)
T TIGR01949       235 DPVGITKAVC  244 (258)
T ss_pred             CHHHHHHHHH
Confidence            6555554433

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=87.46  E-value=2.8  Score=37.90  Aligned_cols=101  Identities=19%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             HHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH-hcCCHHHHHHH
Q 018446          202 IARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA-AVLPDLDIRYM  280 (355)
Q Consensus       202 iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa-aiL~~~~L~~L  280 (355)
                      -++.....||..|-       ..|+..++...++. ..+|++- +.- ++-|+.+|..+|||.|.+-- ..++.+-++  
T Consensus        68 ~~~~a~~~Ga~~i~-------~p~~~~~~~~~~~~-~~~~~i~-gv~-t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~--  135 (190)
T cd00452          68 QADAAIAAGAQFIV-------SPGLDPEVVKAANR-AGIPLLP-GVA-TPTEIMQALELGADIVKLFPAEAVGPAYIK--  135 (190)
T ss_pred             HHHHHHHcCCCEEE-------cCCCCHHHHHHHHH-cCCcEEC-CcC-CHHHHHHHHHCCCCEEEEcCCcccCHHHHH--
Confidence            44566678999883       45666777777664 5667654 333 88999999999999998742 223332222  


Q ss_pred             HHHHHHcC-C--cEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          281 TKICKLLG-L--TALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       281 ~~~A~~LG-L--eaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                       .++..+. +  -+.=-+ |.+.+...+++ |+..|++-+
T Consensus       136 -~l~~~~~~~p~~a~GGI-~~~n~~~~~~~-G~~~v~v~s  172 (190)
T cd00452         136 -ALKGPFPQVRFMPTGGV-SLDNAAEWLAA-GVVAVGGGS  172 (190)
T ss_pred             -HHHhhCCCCeEEEeCCC-CHHHHHHHHHC-CCEEEEEch
Confidence             2233332 3  222235 88999999987 899888754

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=87.44  E-value=1.6  Score=43.48  Aligned_cols=80  Identities=24%  Similarity=0.304  Sum_probs=65.5

Q ss_pred             CCCHHHHHHHHHHcCceEEEEeccC--CCCCC--CHHHHHHHHhcCCC-CCeeccccccCHHHHHHHHHc-CCcchHHHH
Q 018446          196 DFDPVEIARSYEKGGAACLSILTDE--KYFKG--SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTK-GADAVLLIA  269 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLTD~--~fF~G--S~edL~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~~-GADAVLLIa  269 (355)
                      ++...++|+..+++||++|.|--..  ..|.|  +++.+..+++. ++ +||+-.-=|-++-+..+-... |+|+|.+==
T Consensus       151 ~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~-~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigR  229 (323)
T COG0042         151 DILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEA-VPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGR  229 (323)
T ss_pred             cccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHh-CCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcH
Confidence            3457789999999999999997554  45566  89999999996 77 999999999999888888775 699999876


Q ss_pred             hcCCHHH
Q 018446          270 AVLPDLD  276 (355)
Q Consensus       270 aiL~~~~  276 (355)
                      +++..--
T Consensus       230 ga~~nP~  236 (323)
T COG0042         230 GALGNPW  236 (323)
T ss_pred             HHccCCc
Confidence            6666433

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=87.26  E-value=0.47  Score=48.92  Aligned_cols=72  Identities=24%  Similarity=0.172  Sum_probs=50.4

Q ss_pred             HHHHHHHHHcCceEEEE-------eccCCCCCC---CHHHHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHH
Q 018446          200 VEIARSYEKGGAACLSI-------LTDEKYFKG---SFENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLL  267 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISV-------LTD~~fF~G---S~edL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL  267 (355)
                      .+-|+...++||++|-|       +|.+...+.   .+..+..++++  ..++||+.-==|-++-+|..|.++|||+|.+
T Consensus       276 ~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~  355 (450)
T TIGR01302       276 AEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVML  355 (450)
T ss_pred             HHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence            35677777899999943       355444332   23444444332  2578999988899999999999999999976


Q ss_pred             HHhc
Q 018446          268 IAAV  271 (355)
Q Consensus       268 Iaai  271 (355)
                      =-.+
T Consensus       356 G~~~  359 (450)
T TIGR01302       356 GSLL  359 (450)
T ss_pred             Cchh
Confidence            4433

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=87.26  E-value=5.9  Score=38.30  Aligned_cols=102  Identities=15%  Similarity=0.167  Sum_probs=79.4

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHH-cCCcchHHHHhcC-CHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAVLLIAAVL-PDL  275 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~-~GADAVLLIaaiL-~~~  275 (355)
                      +..++++..+..|...|    |+.+-..+++.+..+|++ +++||..-+-+.+..++..... .++|.|.+=..-+ +-.
T Consensus       192 ~A~~~~~~l~~~~l~~i----EeP~~~~d~~~~~~L~~~-~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~  266 (316)
T cd03319         192 EAVELLRELAELGVELI----EQPVPAGDDDGLAYLRDK-SPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLT  266 (316)
T ss_pred             HHHHHHHHHHhcCCCEE----ECCCCCCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHH
Confidence            34566677777776555    666666789999999986 8999999999999999888766 5678877755555 466


Q ss_pred             HHHHHHHHHHHcCCcEEEEeCCHHHHHHH
Q 018446          276 DIRYMTKICKLLGLTALVEVHDEREMDRV  304 (355)
Q Consensus       276 ~L~~L~~~A~~LGLeaLVEVH~~eELerA  304 (355)
                      +...+..+|+..|+.+.+-.|-+-.+-.+
T Consensus       267 ~~~~~~~~a~~~gi~~~~~~~~~~~i~~~  295 (316)
T cd03319         267 EALRIADLARAAGLKVMVGCMVESSLSIA  295 (316)
T ss_pred             HHHHHHHHHHHcCCCEEEECchhhHHHHH
Confidence            78889999999999999987766666553

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins

Probab=87.10  E-value=13  Score=34.09  Aligned_cols=121  Identities=21%  Similarity=0.211  Sum_probs=73.6

Q ss_pred             CceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCC-CCHHHHHHHHhcCCCCCe--eccccccCHH
Q 018446          176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK-GSFENLEAVRSAGVKCPL--LCKEFIVDAW  252 (355)
Q Consensus       176 ~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~-GS~edL~~VR~a~v~lPV--LrKDFIIdpy  252 (355)
                      ...++.|+|......    ..+ ...+++...+.|.      .++-.|+ -+.+.|..+|+...++|+  |.......  
T Consensus       102 ~~~l~leiK~~~~~~----~~~-~~~l~~~l~~~~~------~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~--  168 (230)
T cd08563         102 DLLLNIEIKTDVIHY----PGI-EKKVLELVKEYNL------EDRVIFSSFNHESLKRLKKLDPKIKLALLYETGLQD--  168 (230)
T ss_pred             CcEEEEEECCCCCcC----hhH-HHHHHHHHHHcCC------CCCEEEEcCCHHHHHHHHHHCCCCcEEEEecCcccC--
Confidence            457999999533211    111 1355666666552      2222222 466888888875444553  23332222  


Q ss_pred             HHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEE
Q 018446          253 QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIG  314 (355)
Q Consensus       253 QI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIG  314 (355)
                      ....++..+++++-.-...++    +.+++.+++.|+...+ -|++.+++++++.. |++-|-
T Consensus       169 ~~~~~~~~~~~~v~~~~~~~~----~~~i~~~~~~g~~v~~Wtvn~~~~~~~~~~~-GVdgi~  226 (230)
T cd08563         169 PKDYAKKIGADSLHPDFKLLT----EEVVEELKKRGIPVRLWTVNEEEDMKRLKDL-GVDGII  226 (230)
T ss_pred             HHHHHHHhCCEEEccCchhcC----HHHHHHHHHCCCEEEEEecCCHHHHHHHHHC-CCCEEe
Confidence            234456677777654333344    4689999999999886 56889999999996 887664

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=87.10  E-value=1.3  Score=42.98  Aligned_cols=84  Identities=27%  Similarity=0.517  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR  278 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~  278 (355)
                      ..++|+...+.|+..        +|+|+|+    =|.   + |        +.||       |          ++.+.|+
T Consensus        31 ~~~~a~~~~~~g~~~--------~r~g~~k----pRt---s-~--------~sf~-------G----------~G~~gl~   69 (250)
T PRK13397         31 IRLAASSAKKLGYNY--------FRGGAYK----PRT---S-A--------ASFQ-------G----------LGLQGIR   69 (250)
T ss_pred             HHHHHHHHHHcCCCE--------EEecccC----CCC---C-C--------cccC-------C----------CCHHHHH
Confidence            457888888888866        7888888    221   1 1        2222       2          6667899


Q ss_pred             HHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          279 YMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       279 ~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      .|.++|+++||..+.|||+.++++.+.+  .++++=|-.||...+..
T Consensus        70 ~L~~~~~~~Gl~~~Tev~d~~~v~~~~e--~vdilqIgs~~~~n~~L  114 (250)
T PRK13397         70 YLHEVCQEFGLLSVSEIMSERQLEEAYD--YLDVIQVGARNMQNFEF  114 (250)
T ss_pred             HHHHHHHHcCCCEEEeeCCHHHHHHHHh--cCCEEEECcccccCHHH
Confidence            9999999999999999999999999987  49999999999988553

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=87.07  E-value=4.9  Score=38.99  Aligned_cols=43  Identities=14%  Similarity=0.220  Sum_probs=35.9

Q ss_pred             HHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhc
Q 018446          227 FENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       227 ~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaai  271 (355)
                      .+.+..+|+. +++||.. +|.|. +-|+.+...+|||+|..=-++
T Consensus       191 ~~~i~~ir~~-t~~Pi~v-GFGI~~~e~~~~~~~~GADGvVVGSal  234 (263)
T CHL00200        191 KKLIETIKKM-TNKPIIL-GFGISTSEQIKQIKGWNINGIVIGSAC  234 (263)
T ss_pred             HHHHHHHHHh-cCCCEEE-ECCcCCHHHHHHHHhcCCCEEEECHHH
Confidence            4556777885 8999998 99999 999999999999998874444

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=87.04  E-value=4.3  Score=41.28  Aligned_cols=114  Identities=13%  Similarity=0.086  Sum_probs=84.8

Q ss_pred             HHHHHHHHc--CceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH--------HHHh
Q 018446          201 EIARSYEKG--GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL--------LIAA  270 (355)
Q Consensus       201 ~iA~~Ye~~--GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL--------LIaa  270 (355)
                      +.++...++  |++.|-|-+---|-.+-.++++.+|+. .+-+.+.+==|.++-+..++..+|||+|.        -+.+
T Consensus       110 er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~-~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR  188 (343)
T TIGR01305       110 EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA-FPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTR  188 (343)
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh-CCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCc
Confidence            445555555  599999988887777788999999985 55567778889999999999999999985        3333


Q ss_pred             cCC---HHHHHHHH---HHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEee
Q 018446          271 VLP---DLDIRYMT---KICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       271 iL~---~~~L~~L~---~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGIN  316 (355)
                      .+.   -.+|..+.   +.|+.+|...+.-  +++--|+-+||.+ ||+.+.+-
T Consensus       189 ~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~-GAd~VMlG  241 (343)
T TIGR01305       189 TKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGA-GADFVMLG  241 (343)
T ss_pred             eeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHc-CCCEEEEC
Confidence            331   12455544   4555567766663  8899999999997 88877765

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=86.91  E-value=1.6  Score=43.24  Aligned_cols=76  Identities=9%  Similarity=0.030  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC---CCCCC---------CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcch
Q 018446          198 DPVEIARSYEKGGAACLSILTDE---KYFKG---------SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAV  265 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~---~fF~G---------S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAV  265 (355)
                      +..++++.++++||++|.|-.-.   +.|.|         .++.+.++++...++||+..==|.++-++.+... |||+|
T Consensus       142 ~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgV  220 (318)
T TIGR00742       142 FLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGV  220 (318)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEE
Confidence            45688999999999999998864   35555         4677778887523899988877888888887774 99999


Q ss_pred             HHHHhcCCH
Q 018446          266 LLIAAVLPD  274 (355)
Q Consensus       266 LLIaaiL~~  274 (355)
                      .+==++|.+
T Consensus       221 MigRgal~n  229 (318)
T TIGR00742       221 MVGREAYEN  229 (318)
T ss_pred             EECHHHHhC
Confidence            876666654

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=86.87  E-value=2.1  Score=41.65  Aligned_cols=86  Identities=15%  Similarity=0.122  Sum_probs=61.8

Q ss_pred             CH-HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHH
Q 018446          198 DP-VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD  276 (355)
Q Consensus       198 Dp-~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~  276 (355)
                      || .++|+.|++.||.-|=|.==   =.++.+-+..+.+. +++||.-===|- .-++.....+|||.|.+--+++.+..
T Consensus        38 ~pp~~~A~~~~~~Ga~~lHvVDL---g~~n~~~i~~i~~~-~~~~v~vGGGIr-~e~v~~~l~aGa~rVvIGS~av~~~~  112 (253)
T TIGR02129        38 KPSSYYAKLYKDDGVKGCHVIML---GPNNDDAAKEALHA-YPGGLQVGGGIN-DTNAQEWLDEGASHVIVTSWLFTKGK  112 (253)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEEC---CCCcHHHHHHHHHh-CCCCEEEeCCcC-HHHHHHHHHcCCCEEEECcHHHhCCC
Confidence            56 99999999999988876433   12256666677664 778886655454 48999999999999999887776421


Q ss_pred             --HHHHHHHHHHcC
Q 018446          277 --IRYMTKICKLLG  288 (355)
Q Consensus       277 --L~~L~~~A~~LG  288 (355)
                        ...+-+++..+|
T Consensus       113 i~~~~~~~i~~~fG  126 (253)
T TIGR02129       113 FDLKRLKEIVSLVG  126 (253)
T ss_pred             CCHHHHHHHHHHhC
Confidence              334455666665

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=86.57  E-value=2.9  Score=39.58  Aligned_cols=66  Identities=14%  Similarity=0.109  Sum_probs=45.1

Q ss_pred             HHHHHHHHcCceEEEEeccCCCCCCC-------HHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHH
Q 018446          201 EIARSYEKGGAACLSILTDEKYFKGS-------FENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIA  269 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD~~fF~GS-------~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIa  269 (355)
                      +..+.+.+.....+=++|=...|+|.       .+.++.+|+. .++||+. ||.|. +-|+.+...+ ||++..=-
T Consensus       143 ~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~v-ggGI~~~e~~~~~~~~-ADgvVvGS  216 (242)
T cd04724         143 ERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAV-GFGISTPEQAAEVAKY-ADGVIVGS  216 (242)
T ss_pred             HHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEE-EccCCCHHHHHHHHcc-CCEEEECH
Confidence            34444554334444444434445443       3677888885 7999999 99999 5599999999 99987633

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=86.42  E-value=2.2  Score=42.53  Aligned_cols=102  Identities=19%  Similarity=0.134  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHHcCceEEEEe----ccCCCCCC--CHHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHHH
Q 018446          198 DPVEIARSYEKGGAACLSIL----TDEKYFKG--SFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIA  269 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL----TD~~fF~G--S~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa  269 (355)
                      |..++++.+++.|++.|+|-    |...+..+  ..+++..++++ +  ++||+.--=|-++-++.++...|||+|-+-=
T Consensus       236 e~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~-~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR  314 (353)
T cd04735         236 DTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKER-IAGRLPLIAVGSINTPDDALEALETGADLVAIGR  314 (353)
T ss_pred             HHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHH-hCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhH
Confidence            45688999999999999983    33332222  35677778775 5  7999998888899999999999999999887


Q ss_pred             hcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHH
Q 018446          270 AVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR  303 (355)
Q Consensus       270 aiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELer  303 (355)
                      ++|.+-++-.   .+..=--+-+..+-..+.|++
T Consensus       315 ~liadPdl~~---k~~~G~~~~ir~ci~~~~~~~  345 (353)
T cd04735         315 GLLVDPDWVE---KIKEGREDEINLEIDPDDLEE  345 (353)
T ss_pred             HHHhCccHHH---HHHcCChhhhhhcCCHHHHHh
Confidence            7776645433   222211233555666666664

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=86.29  E-value=15  Score=34.86  Aligned_cols=136  Identities=11%  Similarity=0.032  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHH-cCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          197 FDPVEIARSYEK-GGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~-~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      -||.++|+.|.+ .||.-|-|.==..-+.|.   ++.++++++. +.+||--===|=+.-|+.....+|||.|.+-.+.+
T Consensus        31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~  109 (234)
T PRK13587         31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI  109 (234)
T ss_pred             CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence            389999999999 799999886544445555   5566666664 78897665556677788889999999998877776


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEeCCH-----------------HHH-HHHhccCCCeEEEeeCC--CCCccccChhhHHh
Q 018446          273 PDLDIRYMTKICKLLGLTALVEVHDE-----------------REM-DRVLGIEGIELIGINNR--NLETFEVDNSNTKK  332 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLVEVH~~-----------------eEL-erAl~l~ga~iIGINNR--dL~TfevDl~~t~~  332 (355)
                      .+.  .-+-+.++.+|=..+|-+...                 .|+ ++...+ |+.=|=+++-  |=..--.|++...+
T Consensus       110 ~~~--~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~~~~li~~  186 (234)
T PRK13587        110 QDT--DWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDI-PLGGIIYTDIAKDGKMSGPNFELTGQ  186 (234)
T ss_pred             cCH--HHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHc-CCCEEEEecccCcCCCCccCHHHHHH
Confidence            542  234455566553333333221                 222 232333 5444444443  33344566776677


Q ss_pred             hhcc
Q 018446          333 LLEG  336 (355)
Q Consensus       333 L~~~  336 (355)
                      +...
T Consensus       187 l~~~  190 (234)
T PRK13587        187 LVKA  190 (234)
T ss_pred             HHHh
Confidence            7553

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=86.19  E-value=1.9  Score=39.32  Aligned_cols=89  Identities=18%  Similarity=0.212  Sum_probs=63.0

Q ss_pred             CCCCHHHHHHHHhcCCCCC-eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CH
Q 018446          223 FKGSFENLEAVRSAGVKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DE  298 (355)
Q Consensus       223 F~GS~edL~~VR~a~v~lP-VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~  298 (355)
                      |+|=-+-+..+|+.....+ |...--  +.-|+.+|..+|||.|+|  .=+++++++..++..+.++-.+.+|+.   |+
T Consensus        63 ~g~i~~av~~~~~~~~~~~~I~VEv~--~~ee~~ea~~~g~d~I~l--D~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~  138 (169)
T PF01729_consen   63 FGGIEEAVKAARQAAPEKKKIEVEVE--NLEEAEEALEAGADIIML--DNMSPEDLKEAVEELRELNPRVKIEASGGITL  138 (169)
T ss_dssp             HSSHHHHHHHHHHHSTTTSEEEEEES--SHHHHHHHHHTT-SEEEE--ES-CHHHHHHHHHHHHHHTTTSEEEEESSSST
T ss_pred             hCCHHHHHHHHHHhCCCCceEEEEcC--CHHHHHHHHHhCCCEEEe--cCcCHHHHHHHHHHHhhcCCcEEEEEECCCCH
Confidence            5444566677777533444 444333  356999999999999887  344778999999999999999999994   56


Q ss_pred             HHHHHHhccCCCeEEEee
Q 018446          299 REMDRVLGIEGIELIGIN  316 (355)
Q Consensus       299 eELerAl~l~ga~iIGIN  316 (355)
                      +.+..-... |+++|++-
T Consensus       139 ~ni~~ya~~-gvD~isvg  155 (169)
T PF01729_consen  139 ENIAEYAKT-GVDVISVG  155 (169)
T ss_dssp             TTHHHHHHT-T-SEEEEC
T ss_pred             HHHHHHHhc-CCCEEEcC
Confidence            666666665 89998874

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=86.17  E-value=5.2  Score=38.68  Aligned_cols=116  Identities=19%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             HHHHHHHHHcCceEEEEecc----------------CCCCCCCH--------HHHHHHHhcCC--CCCeecc---c----
Q 018446          200 VEIARSYEKGGAACLSILTD----------------EKYFKGSF--------ENLEAVRSAGV--KCPLLCK---E----  246 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD----------------~~fF~GS~--------edL~~VR~a~v--~lPVLrK---D----  246 (355)
                      .+-|+...++|+++|=+..-                ..-|+||+        +-+..||++ +  ++||..|   +    
T Consensus       144 ~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~-~g~d~~i~vris~~~~~~  222 (327)
T cd02803         144 AAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREA-VGPDFPVGVRLSADDFVP  222 (327)
T ss_pred             HHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHH-cCCCceEEEEechhccCC
Confidence            34455666789999866432                23478997        566777875 4  6777654   1    


Q ss_pred             cccCHHH----HHHHHHcCCcchHHHHhcCC-------------HHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhcc
Q 018446          247 FIVDAWQ----IYYARTKGADAVLLIAAVLP-------------DLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGI  307 (355)
Q Consensus       247 FIIdpyQ----I~eAr~~GADAVLLIaaiL~-------------~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l  307 (355)
                      ...++.+    +.....+|+|.|-+......             ...+..+..+.+.+++..++  -+++.+++++++..
T Consensus       223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~  302 (327)
T cd02803         223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAE  302 (327)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHC
Confidence            1122222    23345568887754333221             22333333444445554444  35778888888875


Q ss_pred             CCCeEEEee
Q 018446          308 EGIELIGIN  316 (355)
Q Consensus       308 ~ga~iIGIN  316 (355)
                      .++++|++-
T Consensus       303 g~aD~V~ig  311 (327)
T cd02803         303 GKADLVALG  311 (327)
T ss_pred             CCCCeeeec
Confidence            468888874

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

Probab=86.07  E-value=19  Score=32.78  Aligned_cols=133  Identities=17%  Similarity=0.138  Sum_probs=80.8

Q ss_pred             ccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCC
Q 018446          161 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC  240 (355)
Q Consensus       161 rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~l  240 (355)
                      ..|.+.|.....  .+..+..|+|...+.    ...+ ...+++.+.+.|...--+     +...+.+.|..+|+....+
T Consensus        83 ptL~evl~~~~~--~~~~l~iEiK~~~~~----~~~~-~~~v~~~l~~~~~~~~v~-----v~Sf~~~~l~~~~~~~p~~  150 (220)
T cd08579          83 PSLDEYLALAKG--LKQKLLIELKPHGHD----SPDL-VEKFVKLYKQNLIENQHQ-----VHSLDYRVIEKVKKLDPKI  150 (220)
T ss_pred             CCHHHHHHHhhc--cCCeEEEEECCCCCC----CHHH-HHHHHHHHHHcCCCcCeE-----EEeCCHHHHHHHHHHCCCC
Confidence            345555544321  145799999965321    1111 235667777776432111     2234788889998753445


Q ss_pred             Ce--eccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEEee
Q 018446          241 PL--LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       241 PV--LrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIGIN  316 (355)
                      |+  +...      ++......|+|.+-+-...++.    ++++.++..|+.+.+ -|++.+++.+++.. |++.|--|
T Consensus       151 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~G~~v~~wtvn~~~~~~~~~~~-Gvd~i~TD  218 (220)
T cd08579         151 KTGYILPF------NIGNLPKTNVDFYSIEYSTLNK----EFIRQAHQNGKKVYVWTVNDPDDMQRYLAM-GVDGIITD  218 (220)
T ss_pred             eEEEEEec------ccCcccccCceEEeeehhhcCH----HHHHHHHHCCCEEEEEcCCCHHHHHHHHHc-CCCEEeCC
Confidence            43  3322      2222345677777655555553    678999999999876 57789999999987 88877543

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=85.95  E-value=2.7  Score=40.72  Aligned_cols=145  Identities=19%  Similarity=0.213  Sum_probs=97.7

Q ss_pred             eecCCCCCCCCCCCCHHHHHHHH---HHcCceEEEEeccCCCCCCC-----HHHHHHHHhcC-------CCCCeecccc-
Q 018446          184 KKASPSRGILREDFDPVEIARSY---EKGGAACLSILTDEKYFKGS-----FENLEAVRSAG-------VKCPLLCKEF-  247 (355)
Q Consensus       184 KRaSPSkG~I~~~~Dp~~iA~~Y---e~~GAaaISVLTD~~fF~GS-----~edL~~VR~a~-------v~lPVLrKDF-  247 (355)
                      +.-|-+-|.+..  +|..++.+-   ...|++-+=|    -+|+++     .+.|..+.++.       .=++++.-|+ 
T Consensus        53 ~pvSAtiGDlp~--~p~~~~~aa~~~a~~GvdyvKv----Gl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~  126 (235)
T PF04476_consen   53 KPVSATIGDLPM--KPGTASLAALGAAATGVDYVKV----GLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ  126 (235)
T ss_pred             CceEEEecCCCC--CchHHHHHHHHHHhcCCCEEEE----ecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh
Confidence            334555566643  454444322   2346555544    245433     35555543220       1258999999 


Q ss_pred             ---ccCHHHHH-HHHHcCCcchHHHH---------hcCCHHHHHHHHHHHHHcCCcE-EEEeCCHHHHHHHhccCCCeEE
Q 018446          248 ---IVDAWQIY-YARTKGADAVLLIA---------AVLPDLDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELI  313 (355)
Q Consensus       248 ---IIdpyQI~-eAr~~GADAVLLIa---------aiL~~~~L~~L~~~A~~LGLea-LVEVH~~eELerAl~l~ga~iI  313 (355)
                         -++|+.|- .++.+|+|+++|=.         ..|+.++|.+|++.|+++||.+ |---=..+++.+...+ +++++
T Consensus       127 r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL~~~di~~L~~l-~pD~l  205 (235)
T PF04476_consen  127 RVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCALAGSLRFEDIPRLKRL-GPDIL  205 (235)
T ss_pred             hhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhccccCChhHHHHHHhc-CCCEE
Confidence               57899875 45788999998844         4589999999999999999864 4455577888888888 89999


Q ss_pred             Eee-----CCCCCccccChhhHHhhhc
Q 018446          314 GIN-----NRNLETFEVDNSNTKKLLE  335 (355)
Q Consensus       314 GIN-----NRdL~TfevDl~~t~~L~~  335 (355)
                      |+-     +.|..+=.+|.+...+|..
T Consensus       206 GfRGAvC~ggdR~~G~id~~~V~~lr~  232 (235)
T PF04476_consen  206 GFRGAVCGGGDRRAGRIDPELVAALRA  232 (235)
T ss_pred             EechhhCCCCCcCccccCHHHHHHHHH
Confidence            985     3455566788887777754

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]

Probab=85.90  E-value=0.57  Score=46.28  Aligned_cols=52  Identities=19%  Similarity=0.457  Sum_probs=48.0

Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       272 L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      |+.+-|+.|.+.++..||-.+.||-|.++++.+.+-  +++|-|-.||.++|++
T Consensus        93 lge~gL~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y--~DilqvGARNMQNF~L  144 (286)
T COG2876          93 LGEEGLKLLKRAADETGLPVVTEVMDVRDVEAAAEY--ADILQVGARNMQNFAL  144 (286)
T ss_pred             cCHHHHHHHHHHHHHcCCeeEEEecCHHHHHHHHhh--hhHHHhcccchhhhHH
Confidence            556789999999999999999999999999999874  8999999999999975

>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional

Probab=85.89  E-value=5.1  Score=42.04  Aligned_cols=121  Identities=15%  Similarity=0.096  Sum_probs=82.8

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHH-----HHcC----ceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSY-----EKGG----AACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK  245 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Y-----e~~G----AaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK  245 (355)
                      +.+.|.+||   ++..    ++-.+.+.++.|     +..|    |+.|.|-..+..=..=..-++.++++ +++|| .=
T Consensus        90 np~~Ia~eI---~D~l----~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~-~dvPL-SI  160 (450)
T PRK04165         90 NPTGIAVDV---SDTM----DDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAET-TDLPL-IL  160 (450)
T ss_pred             CCCEEEEEE---eCCC----ChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHh-cCCCE-EE
Confidence            467899999   4432    223456666777     6667    99999987665111112233444443 68885 33


Q ss_pred             ccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhc
Q 018446          246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG  306 (355)
Q Consensus       246 DFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~  306 (355)
                      |- .|+--+.+|..+|||.+-||.++- .+.++.+.+.|.+.|..+++.-.+.+.+++...
T Consensus       161 DT-~dpevleaAleagad~~plI~Sat-~dN~~~m~~la~~yg~pvVv~~~dl~~L~~lv~  219 (450)
T PRK04165        161 CS-EDPAVLKAALEVVADRKPLLYAAT-KENYEEMAELAKEYNCPLVVKAPNLEELKELVE  219 (450)
T ss_pred             eC-CCHHHHHHHHHhcCCCCceEEecC-cchHHHHHHHHHHcCCcEEEEchhHHHHHHHHH
Confidence            32 688889999999999999998855 458999999999999988885544455555443

>COG1891 Uncharacterized protein conserved in archaea [Function unknown]

Probab=85.88  E-value=0.55  Score=44.34  Aligned_cols=79  Identities=19%  Similarity=0.300  Sum_probs=57.9

Q ss_pred             HHHHcCCcchHHHHhc---------CCHHHHHHHHHHHHHcCCcE-EEEeCCHHHHHHHhccCCCeEEEeeCC-----CC
Q 018446          256 YARTKGADAVLLIAAV---------LPDLDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELIGINNR-----NL  320 (355)
Q Consensus       256 eAr~~GADAVLLIaai---------L~~~~L~~L~~~A~~LGLea-LVEVH~~eELerAl~l~ga~iIGINNR-----dL  320 (355)
                      -|+.+|||-+.+=.++         ++.++|++|.+.|++.||++ |----..+++...-++ |++||||-+-     |.
T Consensus       139 vaa~ag~DvaMvDTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp~l~ei-g~DivGvRgaaC~~GDR  217 (235)
T COG1891         139 VAAEAGADVAMVDTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALAGSLKFEHLPILKEI-GPDIVGVRGAACEGGDR  217 (235)
T ss_pred             HHHhcCCCEEEEecccccchhHHhhhcHHHHHHHHHHHHHcchHHHhccccccccchHHHHh-CCCeeeecchhccCCCc
Confidence            3778999998875554         78899999999999999985 4444566777777777 9999999753     44


Q ss_pred             CccccChhhHHhhhc
Q 018446          321 ETFEVDNSNTKKLLE  335 (355)
Q Consensus       321 ~TfevDl~~t~~L~~  335 (355)
                      .|-.++-+...+|.+
T Consensus       218 n~g~I~relV~kL~e  232 (235)
T COG1891         218 NTGAIRRELVRKLKE  232 (235)
T ss_pred             ccchHHHHHHHHHHH
Confidence            454555555555543

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=85.86  E-value=1.8  Score=44.10  Aligned_cols=68  Identities=26%  Similarity=0.317  Sum_probs=54.8

Q ss_pred             HHHHHHHHHcCceEE--EEeccCCCCCCC--HHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446          200 VEIARSYEKGGAACL--SILTDEKYFKGS--FENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLI  268 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaI--SVLTD~~fF~GS--~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLI  268 (355)
                      .+.|+...+.|+++|  |.---..++.|-  ++.|..++++ +  ++||+..==|-.+--|..|.++|||+|.+=
T Consensus       239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~a-v~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~ig  312 (367)
T TIGR02708       239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEA-VDKRVPIVFDSGVRRGQHVFKALASGADLVALG  312 (367)
T ss_pred             HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHH-hCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEc
Confidence            457777778999977  766666665554  6889999875 4  599999999999999999999999998763

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins

Probab=85.60  E-value=23  Score=30.61  Aligned_cols=135  Identities=23%  Similarity=0.231  Sum_probs=83.5

Q ss_pred             cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCC
Q 018446          162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP  241 (355)
Q Consensus       162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lP  241 (355)
                      .|.+.|....   +...+..|+|-.++..+      ....+.+.+.+.|+..=.++     ...+.+.+..+|+...++|
T Consensus        50 tL~e~l~~~~---~~~~i~leiK~~~~~~~------~~~~l~~~i~~~~~~~~v~i-----~s~~~~~l~~~~~~~p~~~  115 (189)
T cd08556          50 TLEEVLELVK---GGVGLNIELKEPTRYPG------LEAKVAELLREYGLEERVVV-----SSFDHEALRALKELDPEVP  115 (189)
T ss_pred             CHHHHHHhcc---cCcEEEEEECCCCCchh------HHHHHHHHHHHcCCcCCEEE-----EeCCHHHHHHHHHhCCCCc
Confidence            4555554432   24579999998665221      23356666666662222221     2245788888887544555


Q ss_pred             e--eccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEEEe
Q 018446          242 L--LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       242 V--LrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iIGI  315 (355)
                      +  +..+..-..-+....+..|+|.+-+-...+++    .+++.+++.|+...+= |++.++++.++.. |++.|--
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~i~~~~~~g~~v~~wtvn~~~~~~~~~~~-GVdgI~T  187 (189)
T cd08556         116 TGLLVDKPPLDPLLAELARALGADAVNPHYKLLTP----ELVRAAHAAGLKVYVWTVNDPEDARRLLAL-GVDGIIT  187 (189)
T ss_pred             EEEEeecCcccchhhhHHHhcCCeEEccChhhCCH----HHHHHHHHcCCEEEEEcCCCHHHHHHHHHC-CCCEEec
Confidence            3  22222221111135678899988776666654    6789999999999875 5679999999886 8876643

The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho

>PRK15452 putative protease; Provisional

Probab=85.58  E-value=2.3  Score=44.24  Aligned_cols=66  Identities=18%  Similarity=0.208  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHcCCcchHHH---------HhcCCHHHHHHHHHHHHHcCCcEEEE----eCCHHHH-------HHHhccCC
Q 018446          250 DAWQIYYARTKGADAVLLI---------AAVLPDLDIRYMTKICKLLGLTALVE----VHDEREM-------DRVLGIEG  309 (355)
Q Consensus       250 dpyQI~eAr~~GADAVLLI---------aaiL~~~~L~~L~~~A~~LGLeaLVE----VH~~eEL-------erAl~l~g  309 (355)
                      +.-|+..|..+|||||.+=         +.-++.++|++.+++|+..|..+.|-    +|+ +|+       +.+..+ |
T Consensus        12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e-~el~~~~~~l~~l~~~-g   89 (443)
T PRK15452         12 TLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHN-AKLKTFIRDLEPVIAM-K   89 (443)
T ss_pred             CHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCH-HHHHHHHHHHHHHHhC-C
Confidence            4567788888999999882         23466788999999999999888887    443 343       443443 5


Q ss_pred             CeEEEeeC
Q 018446          310 IELIGINN  317 (355)
Q Consensus       310 a~iIGINN  317 (355)
                      ++-|-|.|
T Consensus        90 vDgvIV~d   97 (443)
T PRK15452         90 PDALIMSD   97 (443)
T ss_pred             CCEEEEcC
Confidence            56555554

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=85.40  E-value=2.8  Score=40.55  Aligned_cols=79  Identities=28%  Similarity=0.264  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC---CCC---------CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHc-CCcc
Q 018446          198 DPVEIARSYEKGGAACLSILTDE---KYF---------KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GADA  264 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~---~fF---------~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~-GADA  264 (355)
                      +..++++.+++.|++.|.|-.-.   .++         .-.++.+..+|+. +++||+.--=|-++.++.++... |||.
T Consensus       229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~t~~~a~~~l~~g~aD~  307 (327)
T cd02803         229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA-VKIPVIAVGGIRDPEVAEEILAEGKADL  307 (327)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHCCCCCe
Confidence            45678999999999999875321   111         2235777889886 89999999999999999999998 7999


Q ss_pred             hHHHHhcCCHHHH
Q 018446          265 VLLIAAVLPDLDI  277 (355)
Q Consensus       265 VLLIaaiL~~~~L  277 (355)
                      |-+--.+|.+.++
T Consensus       308 V~igR~~ladP~l  320 (327)
T cd02803         308 VALGRALLADPDL  320 (327)
T ss_pred             eeecHHHHhCccH
Confidence            9887777765444

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=85.30  E-value=3.8  Score=36.93  Aligned_cols=85  Identities=20%  Similarity=0.166  Sum_probs=59.8

Q ss_pred             CHHHHHHHHHHcCceEEEEecc---CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446          198 DPVEIARSYEKGGAACLSILTD---EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD---~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~  274 (355)
                      ++.+.++.+.+.|++.++|-+.   ..|-...++.+..+++. ...|.+.=|=.|.+--+.+...+|||+|.+--++...
T Consensus       114 t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~-~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~  192 (206)
T TIGR03128       114 DKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKL-VKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKA  192 (206)
T ss_pred             ChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHh-cCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence            3555666666779999988532   22223467788888874 5555566567788888999999999999988888865


Q ss_pred             HHHHHHHHH
Q 018446          275 LDIRYMTKI  283 (355)
Q Consensus       275 ~~L~~L~~~  283 (355)
                      ++.++.++.
T Consensus       193 ~d~~~~~~~  201 (206)
T TIGR03128       193 ADPAEAARQ  201 (206)
T ss_pred             CCHHHHHHH
Confidence            555555443

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=85.26  E-value=1.7  Score=42.76  Aligned_cols=52  Identities=12%  Similarity=0.296  Sum_probs=47.0

Q ss_pred             CC-HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          272 LP-DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       272 L~-~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      |+ .+-|+.|-+..+++||-++.|||+.++++.+.+.  ++++=|-.||-..|++
T Consensus        64 ~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~--~DilQIgArn~rn~~L  116 (264)
T PRK05198         64 PGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV--VDVLQIPAFLCRQTDL  116 (264)
T ss_pred             CChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh--CcEEEECchhcchHHH
Confidence            66 5679999999999999999999999999999884  8999999999988743

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=84.93  E-value=5.6  Score=38.20  Aligned_cols=110  Identities=18%  Similarity=0.271  Sum_probs=78.9

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCC-CeeccccccCHHHHHHHHHcCCcchHHHH------
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC-PLLCKEFIVDAWQIYYARTKGADAVLLIA------  269 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~l-PVLrKDFIIdpyQI~eAr~~GADAVLLIa------  269 (355)
                      .+|..+...|.++||+.|||-.|  -..--.+-|+.+|+.++.. =+|+.+   .|...++-..--.|.||++.      
T Consensus        71 ~~p~~~i~~fa~agad~It~H~E--~~~~~~r~i~~Ik~~G~kaGv~lnP~---Tp~~~i~~~l~~vD~VllMsVnPGfg  145 (220)
T COG0036          71 ENPDRYIEAFAKAGADIITFHAE--ATEHIHRTIQLIKELGVKAGLVLNPA---TPLEALEPVLDDVDLVLLMSVNPGFG  145 (220)
T ss_pred             CCHHHHHHHHHHhCCCEEEEEec--cCcCHHHHHHHHHHcCCeEEEEECCC---CCHHHHHHHHhhCCEEEEEeECCCCc
Confidence            37899999999999999999999  4445577888888865432 145554   45555666666789988754      


Q ss_pred             ------hcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhccCCCeEEEe
Q 018446          270 ------AVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       270 ------aiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~l~ga~iIGI  315 (355)
                            ++|  +.++++.++..+-| +.++||.   |.+-+..+..+ ||+++-.
T Consensus       146 GQ~Fi~~~l--~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~A-Gad~~Va  196 (220)
T COG0036         146 GQKFIPEVL--EKIRELRAMIDERL-DILIEVDGGINLETIKQLAAA-GADVFVA  196 (220)
T ss_pred             ccccCHHHH--HHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHc-CCCEEEE
Confidence                  333  25666666666666 9999997   66777777765 8887754

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=84.87  E-value=1.9  Score=43.42  Aligned_cols=50  Identities=22%  Similarity=0.504  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       274 ~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      .+.|+.|.++|+++||..+.|+||.++++.+.+.  ++++-|-.||...|..
T Consensus       143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~--vd~lqIgAr~~~N~~L  192 (335)
T PRK08673        143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY--VDILQIGARNMQNFDL  192 (335)
T ss_pred             HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--CCeEEECcccccCHHH
Confidence            6789999999999999999999999999999875  8999999999988753

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=84.81  E-value=0.99  Score=45.89  Aligned_cols=92  Identities=22%  Similarity=0.137  Sum_probs=61.2

Q ss_pred             EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEecc----CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446          179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTD----EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI  254 (355)
Q Consensus       179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD----~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI  254 (355)
                      -|.++++..|-.=++..-.++. -|+...+.||++|-|--=    -..-...++-|..++++ +++||+..==|-.+..|
T Consensus       227 ~i~~ir~~~~~pviiKgV~~~e-da~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~-~~~~vi~dGGIr~g~Dv  304 (361)
T cd04736         227 DLRWLRDLWPHKLLVKGIVTAE-DAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAA-TYKPVLIDSGIRRGSDI  304 (361)
T ss_pred             HHHHHHHhCCCCEEEecCCCHH-HHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHH-hCCeEEEeCCCCCHHHH
Confidence            4555555555332233334555 455555679999976320    00111236678888886 78999999999999999


Q ss_pred             HHHHHcCCcchHHHHhcC
Q 018446          255 YYARTKGADAVLLIAAVL  272 (355)
Q Consensus       255 ~eAr~~GADAVLLIaaiL  272 (355)
                      ..|.++|||+|.+=-.+|
T Consensus       305 ~KALaLGA~aV~iGr~~l  322 (361)
T cd04736         305 VKALALGANAVLLGRATL  322 (361)
T ss_pred             HHHHHcCCCEEEECHHHH
Confidence            999999999998744433

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02535 glycolate oxidase

Probab=84.75  E-value=1.7  Score=44.24  Aligned_cols=74  Identities=24%  Similarity=0.262  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHcCceEEEEec----cCCCCCCCHHHHHHHHhc-CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          198 DPVEIARSYEKGGAACLSILT----DEKYFKGSFENLEAVRSA-GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT----D~~fF~GS~edL~~VR~a-~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      ++.+ |+...+.|+++|.|--    ...+...+++-|..++++ ..++||+.-==|-.+..|..|.++|||+|.+=-.+|
T Consensus       233 ~~~d-A~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l  311 (364)
T PLN02535        233 TRED-AIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVI  311 (364)
T ss_pred             CHHH-HHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            4443 6666778999997731    112333346888888765 126999999999999999999999999998744444

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase

Probab=84.50  E-value=1.8  Score=42.35  Aligned_cols=52  Identities=15%  Similarity=0.326  Sum_probs=46.9

Q ss_pred             CC-HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          272 LP-DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       272 L~-~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      ++ ++-|+.|-+..+++||-++.|||+.++++.+.+.  +++|=|--||-.+|++
T Consensus        56 ~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~--vDilQIgArn~rn~~L  108 (258)
T TIGR01362        56 PGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV--VDIIQIPAFLCRQTDL  108 (258)
T ss_pred             CCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh--CcEEEeCchhcchHHH
Confidence            66 5679999999999999999999999999999874  8999999999988743

In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=84.47  E-value=4.3  Score=39.99  Aligned_cols=128  Identities=20%  Similarity=0.201  Sum_probs=80.0

Q ss_pred             CCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHH-HhcCCCCCeecc---------cc--ccCHHHHHHHHHc
Q 018446          193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAV-RSAGVKCPLLCK---------EF--IVDAWQIYYARTK  260 (355)
Q Consensus       193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~V-R~a~v~lPVLrK---------DF--IIdpyQI~eAr~~  260 (355)
                      +...+||+.+...-.++|++|+..         .+--++.+ +..+-++|+|-|         |-  -.--+++.+|..+
T Consensus        39 ~~gl~d~e~~v~~v~~~g~dav~~---------~~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~l  109 (265)
T COG1830          39 IEGLEDPENIVAKVAEAGADAVAM---------TPGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRL  109 (265)
T ss_pred             cccccCHHHHHHHHHhcCCCEEEe---------cHhHHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHHhC
Confidence            334679999999999999999763         22233322 112224554322         22  0112467889999


Q ss_pred             CCcchHHHHhcCCH------HHHHHHHHHHHHcCCcEEEEe------------CCHHHHH----HHhccCCCeEEEeeCC
Q 018446          261 GADAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEV------------HDEREMD----RVLGIEGIELIGINNR  318 (355)
Q Consensus       261 GADAVLLIaaiL~~------~~L~~L~~~A~~LGLeaLVEV------------H~~eELe----rAl~l~ga~iIGINNR  318 (355)
                      |||||=.-+-+=+.      +++.+..+.|+++||-.+.++            ++.+..-    .+.++ ||+||=+|= 
T Consensus       110 gadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaael-GADIiK~~y-  187 (265)
T COG1830         110 GADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAEL-GADIIKTKY-  187 (265)
T ss_pred             CCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHh-cCCeEeecC-
Confidence            99998765544433      245566788999999999853            4555555    34555 999997762 


Q ss_pred             CCCccccChhhHHhhhcc
Q 018446          319 NLETFEVDNSNTKKLLEG  336 (355)
Q Consensus       319 dL~TfevDl~~t~~L~~~  336 (355)
                           .-|.+..+++...
T Consensus       188 -----tg~~e~F~~vv~~  200 (265)
T COG1830         188 -----TGDPESFRRVVAA  200 (265)
T ss_pred             -----CCChHHHHHHHHh
Confidence                 3344666666655

>smart00052 EAL Putative diguanylate phosphodiesterase

Probab=84.45  E-value=5.7  Score=35.38  Aligned_cols=108  Identities=18%  Similarity=0.297  Sum_probs=68.4

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccc-cCHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI-VDAWQIYY  256 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFI-IdpyQI~e  256 (355)
                      .++.|+--..+.    ..........+.+.+.|..   +.-|  -|+++...+..+...    |   -|+| +|.-.+..
T Consensus       118 ~lvlei~e~~~~----~~~~~~~~~i~~l~~~G~~---iald--dfg~~~~~~~~l~~l----~---~d~iKld~~~~~~  181 (241)
T smart00052      118 RLELEITESVLL----DDDESAVATLQRLRELGVR---IALD--DFGTGYSSLSYLKRL----P---VDLLKIDKSFVRD  181 (241)
T ss_pred             HEEEEEeChhhh----cChHHHHHHHHHHHHCCCE---EEEe--CCCCcHHHHHHHHhC----C---CCeEEECHHHHhh
Confidence            599999664332    1111122556777777744   3333  288888888877652    2   3444 45544433


Q ss_pred             HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeE
Q 018446          257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIEL  312 (355)
Q Consensus       257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~i  312 (355)
                      ......          ...-++.+..+|+.+|+.+++| |.|.++++.+..+ |++.
T Consensus       182 ~~~~~~----------~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~l~~~-Gi~~  227 (241)
T smart00052      182 LQTDPE----------DEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSL-GCDY  227 (241)
T ss_pred             hccChh----------HHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHc-CCCE
Confidence            221111          1235678899999999999988 9999999999987 7764

Putative diguanylate phosphodiesterase, present in a variety of bacteria.

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=84.36  E-value=4.4  Score=39.67  Aligned_cols=139  Identities=18%  Similarity=0.162  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHHcCceEEEEec-cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446          197 FDPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL  275 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLT-D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~  275 (355)
                      -||.++|+.|++.||..|=|.= |. -...+++-+.++++  +++||=-===| -.-|+.....+|||-|.+-.+++.+.
T Consensus        43 ~dP~~~A~~~~~~Ga~~lHvVDLdg-g~~~n~~~i~~i~~--~~~~vqvGGGI-R~e~i~~~l~~Ga~rViigT~Av~~~  118 (262)
T PLN02446         43 KSAAEFAEMYKRDGLTGGHVIMLGA-DDASLAAALEALRA--YPGGLQVGGGV-NSENAMSYLDAGASHVIVTSYVFRDG  118 (262)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEECCC-CCcccHHHHHHHHh--CCCCEEEeCCc-cHHHHHHHHHcCCCEEEEchHHHhCC
Confidence            4899999999999999887643 33 33344555566654  45665322222 24889999999999999977777530


Q ss_pred             --HHHHHHHHHHHcC-------CcEE-------EEeC--------CHHH-HHHHhccCCCeEEEeeCCCCC--ccccChh
Q 018446          276 --DIRYMTKICKLLG-------LTAL-------VEVH--------DERE-MDRVLGIEGIELIGINNRNLE--TFEVDNS  328 (355)
Q Consensus       276 --~L~~L~~~A~~LG-------LeaL-------VEVH--------~~eE-LerAl~l~ga~iIGINNRdL~--TfevDl~  328 (355)
                        +..-+-+.++.+|       +++-       |-+|        +..| +.+..+. ++.=|-+++=+-+  -.-.|++
T Consensus       119 ~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~-g~~eii~TdI~rDGtl~G~d~e  197 (262)
T PLN02446        119 QIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAA-YCDEFLVHGVDVEGKRLGIDEE  197 (262)
T ss_pred             CCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHh-CCCEEEEEEEcCCCcccCCCHH
Confidence              0233445566665       3332       2222        2344 3666664 6766666654444  3567788


Q ss_pred             hHHhhhcccccc
Q 018446          329 NTKKLLEGERGE  340 (355)
Q Consensus       329 ~t~~L~~~~~~~  340 (355)
                      .+.+|.....-+
T Consensus       198 l~~~l~~~~~ip  209 (262)
T PLN02446        198 LVALLGEHSPIP  209 (262)
T ss_pred             HHHHHHhhCCCC
Confidence            888887653333

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=84.22  E-value=4.8  Score=38.98  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=74.9

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc--CCHHHH
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV--LPDLDI  277 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai--L~~~~L  277 (355)
                      .+....|.++|...        |++|.+-.....+..            ++.| +.+++.+|-|+|=+-...  |+.++.
T Consensus        44 ~eki~la~~~~V~v--------~~GGtl~E~~~~q~~------------~~~Y-l~~~k~lGf~~IEiS~G~~~i~~~~~  102 (237)
T TIGR03849        44 KEKIEMYKDYGIKV--------YPGGTLFEIAHSKGK------------FDEY-LNECDELGFEAVEISDGSMEISLEER  102 (237)
T ss_pred             HHHHHHHHHcCCeE--------eCCccHHHHHHHhhh------------HHHH-HHHHHHcCCCEEEEcCCccCCCHHHH
Confidence            35556778888776        888877766555432            2333 568999999998876665  578899


Q ss_pred             HHHHHHHHHcCCcEEEEeCCHH--------------HHHHHhccCCCeEEEeeCCCCC
Q 018446          278 RYMTKICKLLGLTALVEVHDER--------------EMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVEVH~~e--------------ELerAl~l~ga~iIGINNRdL~  321 (355)
                      .++++.+++.||.++.||.-..              .+++.|++ ||..|.|..|.--
T Consensus       103 ~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeA-GA~~ViiEarEsg  159 (237)
T TIGR03849       103 CNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEA-GADYVIIEGRESG  159 (237)
T ss_pred             HHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHC-CCcEEEEeehhcC
Confidence            9999999999999999986321              23445886 9999999998653

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=84.02  E-value=3.6  Score=39.81  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=31.6

Q ss_pred             HHHHHHc---CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446          281 TKICKLL---GLTALVEVHDEREMDRVLGIEGIELIGINNRNL  320 (355)
Q Consensus       281 ~~~A~~L---GLeaLVEVH~~eELerAl~l~ga~iIGINNRdL  320 (355)
                      ++.+++.   ++-.-|||||.+|+..|+.. |+++|++-|-..
T Consensus       171 v~~~r~~~~~~~~I~vev~t~eea~~A~~~-gaD~I~ld~~~~  212 (269)
T cd01568         171 VKRARAAAPFEKKIEVEVETLEEAEEALEA-GADIIMLDNMSP  212 (269)
T ss_pred             HHHHHHhCCCCCeEEEecCCHHHHHHHHHc-CCCEEEECCCCH
Confidence            4555554   46788999999999999986 999999988544

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=83.86  E-value=2.4  Score=42.19  Aligned_cols=90  Identities=18%  Similarity=0.276  Sum_probs=64.5

Q ss_pred             CCCCHHHHHHHHhcCCCCCee--ccccccCHHHHHHHHHcCCcchHHHHhcCCHH----HHHHHHHHHHHcCCcEEEEeC
Q 018446          223 FKGSFENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVEVH  296 (355)
Q Consensus       223 F~GS~edL~~VR~a~v~lPVL--rKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~----~L~~L~~~A~~LGLeaLVEVH  296 (355)
                      .+-+++.|..+++. .++||+  +-==|-+|-++.++..+|||+|.+.-+++...    ..+.|.+....+        .
T Consensus       188 ~~~~~elL~ei~~~-~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~--------~  258 (293)
T PRK04180        188 LQAPYELVKEVAEL-GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY--------D  258 (293)
T ss_pred             cCCCHHHHHHHHHh-CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc--------C
Confidence            45689999999985 789997  55545599999999999999999999997322    234444443333        4


Q ss_pred             CHHHHHHHh-ccCCCeEEEeeCCCCCc
Q 018446          297 DEREMDRVL-GIEGIELIGINNRNLET  322 (355)
Q Consensus       297 ~~eELerAl-~l~ga~iIGINNRdL~T  322 (355)
                      |.+-|-.+- .+ |-.+.|||.+.|..
T Consensus       259 ~~~~~~~~s~~~-~~~m~g~~~~~~~~  284 (293)
T PRK04180        259 DPEVLAEVSKGL-GEAMVGIDIDELPP  284 (293)
T ss_pred             CHHHHHHHHccc-ccccCCCccccCCH
Confidence            555554443 33 66799999988743

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=83.65  E-value=3.7  Score=37.55  Aligned_cols=76  Identities=21%  Similarity=0.136  Sum_probs=55.3

Q ss_pred             HHHHHHcCceEEEEe-ccCCCCCCCHHHHHHHHhcC-CCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446          203 ARSYEKGGAACLSIL-TDEKYFKGSFENLEAVRSAG-VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR  278 (355)
Q Consensus       203 A~~Ye~~GAaaISVL-TD~~fF~GS~edL~~VR~a~-v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~  278 (355)
                      ++...+.|++.+.+- +|...|.=+++.+..+++.. .++|++.-==|-++-++.+...+|||+|++--+++...+..
T Consensus       134 ~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~  211 (217)
T cd00331         134 LERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPG  211 (217)
T ss_pred             HHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHH
Confidence            455566799999765 12234556678888887741 35788766555577999999999999999999988765543

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PLN02591 tryptophan synthase

Probab=83.60  E-value=1.9  Score=41.58  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=36.1

Q ss_pred             HHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhc
Q 018446          228 ENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       228 edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaai  271 (355)
                      +.+..+|+. +++||++ -|.|. +-|+.+...+|||+|+.=-++
T Consensus       179 ~~i~~vk~~-~~~Pv~v-GFGI~~~e~v~~~~~~GADGvIVGSal  221 (250)
T PLN02591        179 SLLQELKEV-TDKPVAV-GFGISKPEHAKQIAGWGADGVIVGSAM  221 (250)
T ss_pred             HHHHHHHhc-CCCceEE-eCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence            448889986 8999999 99999 999999999999998875444

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=83.58  E-value=2.1  Score=43.32  Aligned_cols=51  Identities=22%  Similarity=0.481  Sum_probs=46.2

Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       272 L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                      ++.+.++.|.++|+++||..+.|||+.++++.+.+.  ++++-|-.+++..+.
T Consensus       166 ~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~--vd~lkI~s~~~~n~~  216 (360)
T PRK12595        166 LGVEGLKILKQVADEYGLAVISEIVNPADVEVALDY--VDVIQIGARNMQNFE  216 (360)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh--CCeEEECcccccCHH
Confidence            446789999999999999999999999999999886  899999999998863

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=83.43  E-value=4.5  Score=38.29  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=74.6

Q ss_pred             ccHHHHHHhhhhcCCCceEEeEeeecCC-CCCCC-CCCCCHHHHHHHHHHcCceEEE---EeccCCCCCCCHHHHHHHHh
Q 018446          161 RDFIGALMAANQRTGLPALIAEVKKASP-SRGIL-REDFDPVEIARSYEKGGAACLS---ILTDEKYFKGSFENLEAVRS  235 (355)
Q Consensus       161 rdF~~aL~~~~~~~g~~aVIAEvKRaSP-SkG~I-~~~~Dp~~iA~~Ye~~GAaaIS---VLTD~~fF~GS~edL~~VR~  235 (355)
                      .+|...+.+..  ..++.+=.++|.--+ ..|+. ....++.++++.|.+.|+..+=   |-.|...-+=+++.+..+++
T Consensus       112 ~~~l~~~~~~f--g~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~  189 (234)
T PRK13587        112 TDWLKEMAHTF--PGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK  189 (234)
T ss_pred             HHHHHHHHHHc--CCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHH
Confidence            34555554433  134444445543211 23433 2467899999999999988653   33344444446888899988


Q ss_pred             cCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       236 a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      . +++||..--=|-++-.+.++...|+|+|++=-++..
T Consensus       190 ~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~  226 (234)
T PRK13587        190 A-TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ  226 (234)
T ss_pred             h-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence            5 899999998888999999999999999987555543

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=83.24  E-value=2  Score=42.86  Aligned_cols=118  Identities=18%  Similarity=0.191  Sum_probs=70.6

Q ss_pred             CCHHHHHHHHHHcC--ceEEEEeccCCCCCC-----CH----HHHHHHHhcCCC-------CCeecc---cccc-CHHHH
Q 018446          197 FDPVEIARSYEKGG--AACLSILTDEKYFKG-----SF----ENLEAVRSAGVK-------CPLLCK---EFIV-DAWQI  254 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~G--AaaISVLTD~~fF~G-----S~----edL~~VR~a~v~-------lPVLrK---DFII-dpyQI  254 (355)
                      ..+.++++..+..+  |++|-++.--....|     ..    +.++.||++ ++       +||+.|   |+.- |.-.+
T Consensus       151 ~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~-~~~~~~~~~~Pv~vKLsP~~~~~~i~~i  229 (335)
T TIGR01036       151 DAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQE-QDGLRRVHRVPVLVKIAPDLTESDLEDI  229 (335)
T ss_pred             cCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HHhhhhccCCceEEEeCCCCCHHHHHHH
Confidence            35677777777666  999888543222222     23    334455554 44       899888   4432 23334


Q ss_pred             HH-HHHcCCcchHHHHhcCCH----------------------HHHHHHHHHHHHcCC-cEEE---EeCCHHHHHHHhcc
Q 018446          255 YY-ARTKGADAVLLIAAVLPD----------------------LDIRYMTKICKLLGL-TALV---EVHDEREMDRVLGI  307 (355)
Q Consensus       255 ~e-Ar~~GADAVLLIaaiL~~----------------------~~L~~L~~~A~~LGL-eaLV---EVH~~eELerAl~l  307 (355)
                      .+ +..+|||+|.++=.+.+.                      --|+.+..+++.++- -+|+   -|+|.+++...+.+
T Consensus       230 a~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~a  309 (335)
T TIGR01036       230 ADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRA  309 (335)
T ss_pred             HHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc
Confidence            44 677999999987654321                      123333344444431 2333   58999999999986


Q ss_pred             CCCeEEEee
Q 018446          308 EGIELIGIN  316 (355)
Q Consensus       308 ~ga~iIGIN  316 (355)
                       ||++|.|-
T Consensus       310 -GA~~Vqv~  317 (335)
T TIGR01036       310 -GASLLQIY  317 (335)
T ss_pred             -CCcHHHhh
Confidence             89887763

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=83.06  E-value=5  Score=34.84  Aligned_cols=77  Identities=21%  Similarity=0.113  Sum_probs=56.0

Q ss_pred             CHHHHHHHHHHcCceEEEEec------cCCC-CCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446          198 DPVEIARSYEKGGAACLSILT------DEKY-FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT------D~~f-F~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa  270 (355)
                      ++.+ +..+.+.|++.|.+.+      .+.+ ...+++.++.+++. .++||+.-- .|++-.+.+.+.+|||+|.+.-+
T Consensus       104 t~~~-~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~G-Gi~~~~i~~~~~~Ga~~i~~g~~  180 (196)
T cd00564         104 SLEE-ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIG-GITPENAAEVLAAGADGVAVISA  180 (196)
T ss_pred             CHHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEEC-CCCHHHHHHHHHcCCCEEEEehH
Confidence            3444 4456667999997642      2232 44568899999875 788887654 67889999999999999999988


Q ss_pred             cCCHHHH
Q 018446          271 VLPDLDI  277 (355)
Q Consensus       271 iL~~~~L  277 (355)
                      ++..++.
T Consensus       181 i~~~~~~  187 (196)
T cd00564         181 ITGADDP  187 (196)
T ss_pred             hhcCCCH
Confidence            8764443

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=83.06  E-value=1.1  Score=46.91  Aligned_cols=67  Identities=15%  Similarity=0.082  Sum_probs=47.5

Q ss_pred             HHHHHHHHHcCceEEE-------EeccCCCCCCCH------HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH
Q 018446          200 VEIARSYEKGGAACLS-------ILTDEKYFKGSF------ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL  266 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaIS-------VLTD~~fF~GS~------edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL  266 (355)
                      .+-|+...++||++|.       ++|-..+-+-..      -++..+.+. ..+||++-==|-++.+|..|.++|||+|.
T Consensus       277 ~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~-~~~~viadGgi~~~~di~kala~GA~~vm  355 (475)
T TIGR01303       277 AEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK-LGGHVWADGGVRHPRDVALALAAGASNVM  355 (475)
T ss_pred             HHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence            3567777789999998       355554433222      122222222 37899999999999999999999999986


Q ss_pred             H
Q 018446          267 L  267 (355)
Q Consensus       267 L  267 (355)
                      +
T Consensus       356 ~  356 (475)
T TIGR01303       356 V  356 (475)
T ss_pred             e
Confidence            5

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=83.00  E-value=6.4  Score=33.40  Aligned_cols=130  Identities=15%  Similarity=0.097  Sum_probs=76.9

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCC-CCCHHHHHHHHhcCC-CCCeeccccccCHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYF-KGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIY  255 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF-~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQI~  255 (355)
                      .+++.+.-..|..       .....|+.+.+.|+++|-|.....++ ....+.+..+|+. . ++|+..|=-...++...
T Consensus        59 ~~~~~~~~~~~~~-------~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~-~~~~~v~~~~~~~~~~~~~  130 (200)
T cd04722          59 PLGVQLAINDAAA-------AVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREA-VPDVKVVVKLSPTGELAAA  130 (200)
T ss_pred             cEEEEEccCCchh-------hhhHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHh-cCCceEEEEECCCCccchh
Confidence            4677775554421       01122677888999999887665332 1246678888875 4 67877663222333322


Q ss_pred             HHHHcCCcchHHHHhcCCHH-------HHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEee
Q 018446          256 YARTKGADAVLLIAAVLPDL-------DIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       256 eAr~~GADAVLLIaaiL~~~-------~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGIN  316 (355)
                      ....+|+|.|.+-...-+..       .+..+.......+...++.  +.+.+++..++.. ||+.|++.
T Consensus       131 ~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~-Gad~v~vg  199 (200)
T cd04722         131 AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALAL-GADGVIVG  199 (200)
T ss_pred             hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHh-CCCEEEec
Confidence            24678999987754433211       1122333344455544443  6777889998886 89988875

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=82.88  E-value=9.8  Score=35.86  Aligned_cols=101  Identities=19%  Similarity=0.234  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCC-HH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLP-DL  275 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~-~~  275 (355)
                      +..++++..+..|..-|    |+.+...+++.+..+++. +++||..-.-+.++.++.+....| +|.|.+=..-++ -.
T Consensus       144 ~a~~~~~~l~~~~i~~i----EeP~~~~d~~~~~~l~~~-~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~  218 (265)
T cd03315         144 QAIRALRALEDLGLDYV----EQPLPADDLEGRAALARA-TDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLT  218 (265)
T ss_pred             HHHHHHHHHHhcCCCEE----ECCCCcccHHHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHH
Confidence            34466677777665444    455667789999999985 899999999999999998876555 788777555554 35


Q ss_pred             HHHHHHHHHHHcCCcEEEEeCCHHHHHH
Q 018446          276 DIRYMTKICKLLGLTALVEVHDEREMDR  303 (355)
Q Consensus       276 ~L~~L~~~A~~LGLeaLVEVH~~eELer  303 (355)
                      +...+.++|+..|+...+-.+.+--+-.
T Consensus       219 ~~~~~~~~A~~~gi~~~~~~~~~s~i~~  246 (265)
T cd03315         219 KAQRVLAVAEALGLPVMVGSMIESGLGT  246 (265)
T ss_pred             HHHHHHHHHHHcCCcEEecCccchHHHH
Confidence            7788999999999999887554444433

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=82.80  E-value=2.5  Score=43.02  Aligned_cols=75  Identities=23%  Similarity=0.136  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC--C---------CCCC-CHHHHHHHHhc------CCCCCeeccccccCHHHHHHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDE--K---------YFKG-SFENLEAVRSA------GVKCPLLCKEFIVDAWQIYYART  259 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~--~---------fF~G-S~edL~~VR~a------~v~lPVLrKDFIIdpyQI~eAr~  259 (355)
                      ++.++++..+.+|+++|.|=--.  .         +++- ...-|..++++      ..++||+.--=|.++.++..|.+
T Consensus       226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala  305 (392)
T cd02808         226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA  305 (392)
T ss_pred             CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH
Confidence            78899999999999999875432  1         1111 12344445442      12689999999999999999999


Q ss_pred             cCCcchHHHHhcC
Q 018446          260 KGADAVLLIAAVL  272 (355)
Q Consensus       260 ~GADAVLLIaaiL  272 (355)
                      +|||+|-+--.+|
T Consensus       306 LGAd~V~ig~~~l  318 (392)
T cd02808         306 LGADAVGIGTAAL  318 (392)
T ss_pred             cCCCeeeechHHH
Confidence            9999997755554

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=82.72  E-value=9.4  Score=35.93  Aligned_cols=124  Identities=15%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             CCCCCCCCCC-CCHHHHHHHHHHcCceEEEEe-ccCCC---CCCCHHHHHHHHhcCCCCCeeccccccCHHHHH-HHHHc
Q 018446          187 SPSRGILRED-FDPVEIARSYEKGGAACLSIL-TDEKY---FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIY-YARTK  260 (355)
Q Consensus       187 SPSkG~I~~~-~Dp~~iA~~Ye~~GAaaISVL-TD~~f---F~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~-eAr~~  260 (355)
                      |||-  ++-+ .+..+..+.++++|++-|=+= -|.+|   |..+.+.+..+|+...++|+-.|=.+-+|+... ....+
T Consensus        10 ~pSi--~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~   87 (228)
T PTZ00170         10 APSI--LAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKA   87 (228)
T ss_pred             ehhH--hhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHc
Confidence            4652  4433 234566677778888776553 34333   355789999999863388876666666666644 56678


Q ss_pred             CCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCC---HHHHHHHhccCCCeEE
Q 018446          261 GADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHD---EREMDRVLGIEGIELI  313 (355)
Q Consensus       261 GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~---~eELerAl~l~ga~iI  313 (355)
                      |||.|.+-+..-. ..+.+.++.++++|+.+=|-+..   .++++..+.....+.|
T Consensus        88 Gad~itvH~ea~~-~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~V  142 (228)
T PTZ00170         88 GASQFTFHIEATE-DDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMV  142 (228)
T ss_pred             CCCEEEEeccCCc-hHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhH
Confidence            9999988877643 34889999999999988888765   4555544432234444

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=82.37  E-value=5.1  Score=35.85  Aligned_cols=78  Identities=22%  Similarity=0.220  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCC----------CHHHHHHHHhcCCC-CCeeccccccCHHHHHHHHHcCCcchH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKG----------SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVL  266 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G----------S~edL~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~~GADAVL  266 (355)
                      ++.+..+++ ..||+.|.+-   .+|.+          .++.++.+++. .+ +||.. +=+|++-.+.++..+|||+|.
T Consensus       113 t~~e~~~a~-~~gaD~v~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~v~a-~GGI~~~~i~~~~~~Ga~gv~  186 (212)
T PRK00043        113 TLEEAAAAL-AAGADYVGVG---PIFPTPTKKDAKAPQGLEGLREIRAA-VGDIPIVA-IGGITPENAPEVLEAGADGVA  186 (212)
T ss_pred             CHHHHHHHh-HcCCCEEEEC---CccCCCCCCCCCCCCCHHHHHHHHHh-cCCCCEEE-ECCcCHHHHHHHHHcCCCEEE
Confidence            566665555 5699999653   24433          38999999875 55 88875 446799999999999999999


Q ss_pred             HHHhcCCHHHHHHHH
Q 018446          267 LIAAVLPDLDIRYMT  281 (355)
Q Consensus       267 LIaaiL~~~~L~~L~  281 (355)
                      +.-++...++..+.+
T Consensus       187 ~gs~i~~~~d~~~~~  201 (212)
T PRK00043        187 VVSAITGAEDPEAAA  201 (212)
T ss_pred             EeHHhhcCCCHHHHH
Confidence            998887654544433

>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

Probab=82.36  E-value=14  Score=33.95  Aligned_cols=136  Identities=21%  Similarity=0.175  Sum_probs=79.2

Q ss_pred             cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCC-CCHHHHHHHHhcCCCC
Q 018446          162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK-GSFENLEAVRSAGVKC  240 (355)
Q Consensus       162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~-GS~edL~~VR~a~v~l  240 (355)
                      .|.+.|.....  ....++.|+|-- +. +   .. -...+++.+.+.|.     +.+.-.|+ -+.+.|..+++...++
T Consensus        88 tL~evl~~~~~--~~~~l~ieiK~~-~~-~---~~-~~~~~~~~~~~~~~-----~~~~v~~~Sf~~~~l~~~~~~~p~~  154 (233)
T cd08582          88 TLEEYLAIVPK--YGKKLFIEIKHP-RR-G---PE-AEEELLKLLKESGL-----LPEQIVIISFDAEALKRVRELAPTL  154 (233)
T ss_pred             CHHHHHHHHHh--cCceEEEEeCCC-cc-C---cc-HHHHHHHHHHHcCC-----CCCCEEEEecCHHHHHHHHHHCCCC
Confidence            45555543221  135799999963 11 1   11 12346666666641     12222232 3678888888754555


Q ss_pred             Cee--ccccccCHHH-HHHHHHcCCcchHHHHhc-CCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEEEe
Q 018446          241 PLL--CKEFIVDAWQ-IYYARTKGADAVLLIAAV-LPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       241 PVL--rKDFIIdpyQ-I~eAr~~GADAVLLIaai-L~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iIGI  315 (355)
                      |+.  .....- ... -..+...++++|-+-... ++    .++++.++..|+.+.+= |++.+++++.+.. |++.|--
T Consensus       155 ~~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~----~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~-GVdgi~T  228 (233)
T cd08582         155 ETLWLRNYKSP-KEDPRPLAKSGGAAGLDLSYEKKLN----PAFIKALRDAGLKLNVWTVDDAEDAKRLIEL-GVDSITT  228 (233)
T ss_pred             cEEEEeccCcc-ccchhHHHHhhCceEEcccccccCC----HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHC-CCCEEEc
Confidence            543  222210 001 013466788876654433 43    36799999999998864 8889999999987 8877654


Q ss_pred             e
Q 018446          316 N  316 (355)
Q Consensus       316 N  316 (355)
                      +
T Consensus       229 D  229 (233)
T cd08582         229 N  229 (233)
T ss_pred             C
Confidence            4

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=82.35  E-value=2.2  Score=41.40  Aligned_cols=49  Identities=22%  Similarity=0.509  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       274 ~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                      .+.|+.|.++|+++||..+.|+|+..+++.+.+.  ++++-|-.|+...+.
T Consensus        77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~--vd~~kIga~~~~n~~  125 (266)
T PRK13398         77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY--ADMLQIGSRNMQNFE  125 (266)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh--CCEEEECcccccCHH
Confidence            7789999999999999999999999999999885  789999999998863

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=82.21  E-value=1  Score=42.39  Aligned_cols=89  Identities=15%  Similarity=0.238  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHH-HHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFE-NLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD  276 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~e-dL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~  276 (355)
                      +..++|+...+.|+++|-|=.--....-..+ .++.+|+. +++||+.  |.=++-||-    -||||+| +.++|+-.+
T Consensus        12 ~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~-~~lPvil--fp~~~~~i~----~~aD~~~-~~sllns~~   83 (205)
T TIGR01769        12 EIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKI-TNLPVIL--FPGNVNGLS----RYADAVF-FMSLLNSAD   83 (205)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhh-cCCCEEE--ECCCccccC----cCCCEEE-EEEeecCCC
Confidence            3456777888999999854211111111122 34677875 7999988  788888876    4899965 566776545


Q ss_pred             HHHHH----HHH---HHcCCcEEEE
Q 018446          277 IRYMT----KIC---KLLGLTALVE  294 (355)
Q Consensus       277 L~~L~----~~A---~~LGLeaLVE  294 (355)
                      -.+++    ..+   +++|++++-|
T Consensus        84 ~~~i~g~~~~~~~~~~~~~~e~ip~  108 (205)
T TIGR01769        84 TYFIVGAQILGAITILKLNLEVIPM  108 (205)
T ss_pred             cchhhhHHHHHHHHHHHcCCcccce
Confidence            44433    334   7889887765

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=82.11  E-value=3.4  Score=41.03  Aligned_cols=77  Identities=8%  Similarity=0.001  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHHcCceEEEEecc---CCCCCC---------CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcch
Q 018446          198 DPVEIARSYEKGGAACLSILTD---EKYFKG---------SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAV  265 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD---~~fF~G---------S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAV  265 (355)
                      +..++++.++++|+++|.|-.-   ...+.|         .++.+..++++.+++||+.--=|-++-++.+... |||+|
T Consensus       152 ~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgV  230 (333)
T PRK11815        152 FLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGV  230 (333)
T ss_pred             HHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEE
Confidence            4678999999999999998632   123443         3888999988534899998877888888888775 89999


Q ss_pred             HHHHhcCCHH
Q 018446          266 LLIAAVLPDL  275 (355)
Q Consensus       266 LLIaaiL~~~  275 (355)
                      .+==++|.+.
T Consensus       231 mIGRa~l~nP  240 (333)
T PRK11815        231 MIGRAAYHNP  240 (333)
T ss_pred             EEcHHHHhCC
Confidence            8866666543

>PRK13340 alanine racemase; Reviewed

Probab=82.11  E-value=23  Score=35.93  Aligned_cols=103  Identities=19%  Similarity=0.207  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR  278 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~  278 (355)
                      ..++|+...+.|+.++.|        .+.+....+|+++++-|+|.=-. ..+.++.++..+|-     +..+=+.++++
T Consensus        80 ~~~va~~l~~~G~~~~~V--------as~~Ea~~lr~~G~~~~ilvl~~-~~~~el~~~~~~~l-----~~~v~s~~~l~  145 (406)
T PRK13340         80 IELLMPSIIKANVPCIGI--------ASNEEARRVRELGFTGQLLRVRS-ASPAEIEQALRYDL-----EELIGDDEQAK  145 (406)
T ss_pred             HHHHHHHHHHCCCCEEEE--------ccHHHHHHHHhCCCCCCEEEECC-CCHHHHHHHHHcCC-----EEEECCHHHHH
Confidence            567999999999988666        55788888998877777766322 37888888877752     34466777888


Q ss_pred             HHHHHHHHcC--CcEEEEeCC------------HHHHHH---HhccCCCeEEEe
Q 018446          279 YMTKICKLLG--LTALVEVHD------------EREMDR---VLGIEGIELIGI  315 (355)
Q Consensus       279 ~L~~~A~~LG--LeaLVEVH~------------~eELer---Al~l~ga~iIGI  315 (355)
                      .|.++|...|  +.+.++|.+            .+++..   .....+.++.||
T Consensus       146 ~l~~~a~~~~~~~~V~LkVDt~Gm~R~G~~~~e~~~~~~~~~l~~~~~l~l~Gi  199 (406)
T PRK13340        146 LLAAIAKKNGKPIDIHLALNSGGMSRNGLDMSTARGKWEALRIATLPSLGIVGI  199 (406)
T ss_pred             HHHHHHHHcCCceEEEEEECCCCCCCcCCChhhhhHHHHHHHHHhCCCccEEEE
Confidence            8888888877  578999988            223333   233346788898

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=82.03  E-value=3.5  Score=40.41  Aligned_cols=59  Identities=31%  Similarity=0.456  Sum_probs=44.8

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC----HHHHHHHHhcCCCCCee
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGVKCPLL  243 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS----~edL~~VR~a~v~lPVL  243 (355)
                      ++..||+=+       |-.+ ..+..++|+.+++.||++|.|.| |-|+..+    ++++..|.++ +++|++
T Consensus        72 grvpviaG~-------g~~~-t~eai~lak~a~~~Gad~il~v~-PyY~k~~~~gl~~hf~~ia~a-~~lPvi  134 (299)
T COG0329          72 GRVPVIAGV-------GSNS-TAEAIELAKHAEKLGADGILVVP-PYYNKPSQEGLYAHFKAIAEA-VDLPVI  134 (299)
T ss_pred             CCCcEEEec-------CCCc-HHHHHHHHHHHHhcCCCEEEEeC-CCCcCCChHHHHHHHHHHHHh-cCCCEE
Confidence            566688876       2111 34788999999999999999998 5678777    5677788876 688865

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=82.02  E-value=2.5  Score=42.96  Aligned_cols=52  Identities=17%  Similarity=0.434  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       272 L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      ++.+.|+.|.++++++||..+.|||+.++++.+.+.  ++++=|-.||...|.+
T Consensus       149 ~g~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~--~d~lqIga~~~~n~~L  200 (352)
T PRK13396        149 HGESALELLAAAREATGLGIITEVMDAADLEKIAEV--ADVIQVGARNMQNFSL  200 (352)
T ss_pred             chHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh--CCeEEECcccccCHHH
Confidence            778889999999999999999999999999999885  8999999999998765

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=81.94  E-value=17  Score=34.51  Aligned_cols=134  Identities=16%  Similarity=0.122  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHHcCceEEEEecc--------CCCC--CCCHHHHHHHHhcC--CCCCeeccccccCHHHHHHHHHcCCcch
Q 018446          198 DPVEIARSYEKGGAACLSILTD--------EKYF--KGSFENLEAVRSAG--VKCPLLCKEFIVDAWQIYYARTKGADAV  265 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD--------~~fF--~GS~edL~~VR~a~--v~lPVLrKDFIIdpyQI~eAr~~GADAV  265 (355)
                      +-.++++.+.+.|...|=|=--        ...|  -...+.++.+++..  +.+-+|+-=-..+...|..|...|.|.|
T Consensus        23 ~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~~~i  102 (263)
T cd07943          23 QVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADLGVDVV  102 (263)
T ss_pred             HHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHcCCCEE
Confidence            3456777777777776644310        0001  12456666665431  1222221000123466788888899876


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCcEEEEe-----CCHHHHHH----HhccCCCeEEEeeCCCCCccc-cChhhHHhhhc
Q 018446          266 LLIAAVLPDLDIRYMTKICKLLGLTALVEV-----HDEREMDR----VLGIEGIELIGINNRNLETFE-VDNSNTKKLLE  335 (355)
Q Consensus       266 LLIaaiL~~~~L~~L~~~A~~LGLeaLVEV-----H~~eELer----Al~l~ga~iIGINNRdL~Tfe-vDl~~t~~L~~  335 (355)
                      =+...+=....+.+.+++|++.|+++-+-+     ++.+++..    +.++ |++.|.+-    +|+- ..+....+|.+
T Consensus       103 ri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~-G~d~i~l~----DT~G~~~P~~v~~lv~  177 (263)
T cd07943         103 RVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESY-GADCVYVT----DSAGAMLPDDVRERVR  177 (263)
T ss_pred             EEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHc-CCCEEEEc----CCCCCcCHHHHHHHHH
Confidence            554444334578889999999999988777     67777643    3443 78887764    2332 34555555555


Q ss_pred             c
Q 018446          336 G  336 (355)
Q Consensus       336 ~  336 (355)
                      .
T Consensus       178 ~  178 (263)
T cd07943         178 A  178 (263)
T ss_pred             H
Confidence            4

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>PLN02826 dihydroorotate dehydrogenase

Probab=81.93  E-value=4.1  Score=42.08  Aligned_cols=74  Identities=26%  Similarity=0.155  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHcCceEEEEec---------c-CCC------CCC------CHHHHHHHHhcCC--CCCeeccccccCHHH
Q 018446          198 DPVEIARSYEKGGAACLSILT---------D-EKY------FKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQ  253 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT---------D-~~f------F~G------S~edL~~VR~a~v--~lPVLrKDFIIdpyQ  253 (355)
                      |..++|+...++||++|.+--         + ...      +.|      +++.+..++++ +  ++||+--==|.++..
T Consensus       277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~-~~~~ipIIgvGGI~sg~D  355 (409)
T PLN02826        277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRL-TRGKIPLVGCGGVSSGED  355 (409)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHH-hCCCCcEEEECCCCCHHH
Confidence            578899999999999998752         1 111      222      46777888775 5  799999999999999


Q ss_pred             HHHHHHcCCcchHHHHhcC
Q 018446          254 IYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       254 I~eAr~~GADAVLLIaaiL  272 (355)
                      +++...+|||+|-+--+++
T Consensus       356 a~e~i~AGAs~VQv~Ta~~  374 (409)
T PLN02826        356 AYKKIRAGASLVQLYTAFA  374 (409)
T ss_pred             HHHHHHhCCCeeeecHHHH
Confidence            9999999999999866654

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=81.92  E-value=2.1  Score=42.31  Aligned_cols=45  Identities=9%  Similarity=0.025  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHc--CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCc
Q 018446          277 IRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLET  322 (355)
Q Consensus       277 L~~L~~~A~~L--GLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~T  322 (355)
                      +..-++.+++.  ....-|||.|.+|++.|+++ |+++|...|-+.+.
T Consensus       176 i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a-gaDiI~LDn~~~e~  222 (284)
T PRK06096        176 WSGAINQLRRHAPEKKIVVEADTPKEAIAALRA-QPDVLQLDKFSPQQ  222 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc-CCCEEEECCCCHHH
Confidence            34444445544  46699999999999999997 99999998776543

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=81.84  E-value=3.1  Score=40.78  Aligned_cols=42  Identities=12%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHH-cC--CcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          276 DIRYMTKICKL-LG--LTALVEVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       276 ~L~~L~~~A~~-LG--LeaLVEVH~~eELerAl~l~ga~iIGINNR  318 (355)
                      .+...++.++. ++  .-..|||.|.+|+..|+++ |+++|+..|=
T Consensus       167 ~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~-GaDiI~LDn~  211 (273)
T PRK05848        167 DLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA-GADIVMCDNM  211 (273)
T ss_pred             cHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc-CCCEEEECCC
Confidence            56677777766 44  5689999999999999997 9999996664

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=81.81  E-value=13  Score=36.64  Aligned_cols=133  Identities=18%  Similarity=0.202  Sum_probs=76.3

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHc--CceEEEEeccCCCCCCC---------HHHHHHHHhcCCC-----CC
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKG--GAACLSILTDEKYFKGS---------FENLEAVRSAGVK-----CP  241 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~--GAaaISVLTD~~fF~GS---------~edL~~VR~a~v~-----lP  241 (355)
                      .||+-|-..+++.  +  ...+.++++..++.  +|++|-+..=-....|.         .+.++.||+. ++     +|
T Consensus       130 plivsi~g~~~~~--~--~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~-~~~~~~~~P  204 (327)
T cd04738         130 PLGVNIGKNKDTP--L--EDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEE-RNKLGKKVP  204 (327)
T ss_pred             eEEEEEeCCCCCc--c--cccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHH-HhhcccCCC
Confidence            5778775554431  1  12344555544443  38888775532223221         2455666764 54     89


Q ss_pred             eecc---cccc-CHHHHHH-HHHcCCcchHHHHhcC-----------------CH-----HHHHHHHHHHHHcC--CcEE
Q 018446          242 LLCK---EFIV-DAWQIYY-ARTKGADAVLLIAAVL-----------------PD-----LDIRYMTKICKLLG--LTAL  292 (355)
Q Consensus       242 VLrK---DFII-dpyQI~e-Ar~~GADAVLLIaaiL-----------------~~-----~~L~~L~~~A~~LG--LeaL  292 (355)
                      |..|   ++-. +...+.+ +..+|||+|.++-...                 +.     ..+.....+++.++  +..+
T Consensus       205 v~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi  284 (327)
T cd04738         205 LLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPII  284 (327)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEE
Confidence            8877   3321 1223333 4567999999876532                 11     12455556666663  3322


Q ss_pred             --EEeCCHHHHHHHhccCCCeEEEee
Q 018446          293 --VEVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       293 --VEVH~~eELerAl~l~ga~iIGIN  316 (355)
                        =-|+|.+++.+.+.+ ||+.|+|-
T Consensus       285 ~~GGI~t~~da~e~l~a-GAd~V~vg  309 (327)
T cd04738         285 GVGGISSGEDAYEKIRA-GASLVQLY  309 (327)
T ss_pred             EECCCCCHHHHHHHHHc-CCCHHhcc
Confidence              248999999999985 99988763

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=81.75  E-value=4.4  Score=39.76  Aligned_cols=60  Identities=13%  Similarity=0.101  Sum_probs=44.3

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCC-CCCeec
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGV-KCPLLC  244 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v-~lPVLr  244 (355)
                      ++..||+=+--.|.        .+..++|+.+++.||+++.|++ |.||..+.    ++.+.|.++ + ++||+-
T Consensus        76 grvpvi~Gv~~~~t--------~~ai~~a~~A~~~Gad~vlv~~-P~y~~~~~~~l~~yf~~va~a-~~~lPv~i  140 (309)
T cd00952          76 GRVPVFVGATTLNT--------RDTIARTRALLDLGADGTMLGR-PMWLPLDVDTAVQFYRDVAEA-VPEMAIAI  140 (309)
T ss_pred             CCCCEEEEeccCCH--------HHHHHHHHHHHHhCCCEEEECC-CcCCCCCHHHHHHHHHHHHHh-CCCCcEEE
Confidence            56678887733322        3678999999999999999998 56887764    556667775 6 588763

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=81.65  E-value=3.7  Score=40.87  Aligned_cols=133  Identities=20%  Similarity=0.183  Sum_probs=76.2

Q ss_pred             ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcC--ceEEEEeccCCCCCCC---------HHHHHHHHhcCCC-----C
Q 018446          177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGG--AACLSILTDEKYFKGS---------FENLEAVRSAGVK-----C  240 (355)
Q Consensus       177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~G--AaaISVLTD~~fF~GS---------~edL~~VR~a~v~-----l  240 (355)
                      ..||+-|-..-.+    .....+.++++..++.+  |++|-+..=-....|.         .+-++.||++ ++     +
T Consensus       138 ~pvivsI~~~~~~----~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~-~~~~~~~~  212 (344)
T PRK05286        138 IPLGINIGKNKDT----PLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA-QAELHGYV  212 (344)
T ss_pred             CcEEEEEecCCCC----CcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HhccccCC
Confidence            3578877432111    11224555555555444  8888775432222221         2556677875 65     9


Q ss_pred             Ceecc---cccc-CHHHHHH-HHHcCCcchHHHHhcCCH----------------------HHHHHHHHHHHHcCC-cEE
Q 018446          241 PLLCK---EFIV-DAWQIYY-ARTKGADAVLLIAAVLPD----------------------LDIRYMTKICKLLGL-TAL  292 (355)
Q Consensus       241 PVLrK---DFII-dpyQI~e-Ar~~GADAVLLIaaiL~~----------------------~~L~~L~~~A~~LGL-eaL  292 (355)
                      ||+.|   |+-. +.-.+.+ +..+|||+|.++-...+.                      ..++....+...++- -+|
T Consensus       213 PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipI  292 (344)
T PRK05286        213 PLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPI  292 (344)
T ss_pred             ceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCE
Confidence            99887   4322 1223433 345799999998765211                      134444455555521 133


Q ss_pred             E---EeCCHHHHHHHhccCCCeEEEe
Q 018446          293 V---EVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       293 V---EVH~~eELerAl~l~ga~iIGI  315 (355)
                      +   -|+|.+++.+.+.+ ||+.|.|
T Consensus       293 ig~GGI~s~eda~e~l~a-GAd~V~v  317 (344)
T PRK05286        293 IGVGGIDSAEDAYEKIRA-GASLVQI  317 (344)
T ss_pred             EEECCCCCHHHHHHHHHc-CCCHHHH
Confidence            3   68999999999885 8988766

>PRK07695 transcriptional regulator TenI; Provisional

Probab=81.62  E-value=8.3  Score=34.98  Aligned_cols=103  Identities=17%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHH----HHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLE----AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~----~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~  274 (355)
                      ...+++ ..++|+.+|=+- |+.   .+.+++.    .+++.++  +.  --+||+.+ ...|..+|+|+|-|-..-+..
T Consensus        17 ~~~~~~-~~~~g~~~iqlR-~k~---~~~~~~~~~~~~l~~~~~--~~--~~liin~~-~~la~~~~~~gvHl~~~~~~~   86 (201)
T PRK07695         17 LVAVAM-QIHSEVDYIHIR-ERE---KSAKELYEGVESLLKKGV--PA--SKLIINDR-VDIALLLNIHRVQLGYRSFSV   86 (201)
T ss_pred             HHHHHH-HHhCCCCEEEEc-CCC---CCHHHHHHHHHHHHHhCC--CC--CeEEEECH-HHHHHHcCCCEEEeCcccCCH
Confidence            445565 456788776554 433   4444433    3333222  21  11444433 556889999999775544443


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          275 LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       275 ~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                      .+++..   .  -++-.-+++||.+++.++.++ |++.|+.-.
T Consensus        87 ~~~r~~---~--~~~~ig~s~~s~e~a~~a~~~-Gadyi~~g~  123 (201)
T PRK07695         87 RSVREK---F--PYLHVGYSVHSLEEAIQAEKN-GADYVVYGH  123 (201)
T ss_pred             HHHHHh---C--CCCEEEEeCCCHHHHHHHHHc-CCCEEEECC
Confidence            333322   1  166778899999999999987 999997644

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=81.58  E-value=2.9  Score=40.35  Aligned_cols=49  Identities=24%  Similarity=0.501  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       274 ~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                      .+.|+.|-++|+++||..+.|+||.++++.+.+.  ++++=|-.|++..+.
T Consensus        75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~--~d~lkI~s~~~~n~~  123 (260)
T TIGR01361        75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY--ADILQIGARNMQNFE  123 (260)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh--CCEEEECcccccCHH
Confidence            7789999999999999999999999999999875  789999999887754

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional

Probab=81.43  E-value=4.4  Score=40.73  Aligned_cols=139  Identities=17%  Similarity=0.162  Sum_probs=83.4

Q ss_pred             CCceEEeEeeecCCCCC---CCCC-----CCCHHHHHHHHH-HcCceEEEEec---cCCCCCCCHHHHH----HHHhcCC
Q 018446          175 GLPALIAEVKKASPSRG---ILRE-----DFDPVEIARSYE-KGGAACLSILT---DEKYFKGSFENLE----AVRSAGV  238 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG---~I~~-----~~Dp~~iA~~Ye-~~GAaaISVLT---D~~fF~GS~edL~----~VR~a~v  238 (355)
                      ++|.|-.||----| .+   .+..     --||.++|+.-. +.||+.|-|..   |+.-..-+.+++.    .|.++ +
T Consensus        46 n~p~ia~~v~D~~~-~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~ea-v  123 (319)
T PRK04452         46 NPPVIAMEVFDMPP-EDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQA-V  123 (319)
T ss_pred             CCCeEEEEEecCCC-cccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHh-C
Confidence            34566667765533 22   1111     237899999665 89999999996   5544344554444    34443 8


Q ss_pred             CCCeec---cccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe-CCHHHHHHHhccCCCeEEE
Q 018446          239 KCPLLC---KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV-HDEREMDRVLGIEGIELIG  314 (355)
Q Consensus       239 ~lPVLr---KDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV-H~~eELerAl~l~ga~iIG  314 (355)
                      ++|+.-   .+-=-|+--+..+...-.+-=.||.++= .+..+.+..+|+.+|-.+++.. .|.+.+.+....  +.=.|
T Consensus       124 d~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-~en~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~--l~~~G  200 (319)
T PRK04452        124 DVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-EDNYKKIAAAAMAYGHAVIAWSPLDINLAKQLNIL--LTELG  200 (319)
T ss_pred             CCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC-HHHHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHH--HHHcC
Confidence            899851   1111156666666666555533444443 4479999999999999999887 555544443332  22345


Q ss_pred             eeCC
Q 018446          315 INNR  318 (355)
Q Consensus       315 INNR  318 (355)
                      |.+-
T Consensus       201 i~~e  204 (319)
T PRK04452        201 VPRE  204 (319)
T ss_pred             CCHH
Confidence            5444

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=81.16  E-value=8  Score=36.07  Aligned_cols=105  Identities=15%  Similarity=0.148  Sum_probs=69.6

Q ss_pred             HHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH-HHhcCCHHHHHH
Q 018446          201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL-IAAVLPDLDIRY  279 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL-IaaiL~~~~L~~  279 (355)
                      +.++...++||..|-.       .+...++...+.. ...|++.=  ..++-|+.+|..+|||.|-+ -+..++.+.++.
T Consensus        74 ~~~~~a~~aGA~fivs-------p~~~~~v~~~~~~-~~~~~~~G--~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~  143 (206)
T PRK09140         74 EQVDRLADAGGRLIVT-------PNTDPEVIRRAVA-LGMVVMPG--VATPTEAFAALRAGAQALKLFPASQLGPAGIKA  143 (206)
T ss_pred             HHHHHHHHcCCCEEEC-------CCCCHHHHHHHHH-CCCcEEcc--cCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence            3556666789987643       5556666666653 67777766  88999999999999999975 234566655555


Q ss_pred             HHHHHH-HcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          280 MTKICK-LLGLTALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       280 L~~~A~-~LGLeaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                      +..... .+=+-++=-| |.+.+...+++ |++.+++-.
T Consensus       144 l~~~~~~~ipvvaiGGI-~~~n~~~~~~a-Ga~~vav~s  180 (206)
T PRK09140        144 LRAVLPPDVPVFAVGGV-TPENLAPYLAA-GAAGFGLGS  180 (206)
T ss_pred             HHhhcCCCCeEEEECCC-CHHHHHHHHHC-CCeEEEEeh
Confidence            443332 1222233233 77888888886 999998543

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=81.04  E-value=5.3  Score=39.31  Aligned_cols=45  Identities=13%  Similarity=0.018  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHc--CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446          276 DIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       276 ~L~~L~~~A~~L--GLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~  321 (355)
                      .+...++.+++.  +...-|||.|.+|+..|+++ |+++|...|-+..
T Consensus       174 ~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~-GaDiI~lDn~~~e  220 (277)
T TIGR01334       174 DWGGAIGRLKQTAPERKITVEADTIEQALTVLQA-SPDILQLDKFTPQ  220 (277)
T ss_pred             cHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc-CcCEEEECCCCHH
Confidence            566777777776  67899999999999999997 9999999864443

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=80.42  E-value=16  Score=36.85  Aligned_cols=145  Identities=21%  Similarity=0.238  Sum_probs=97.9

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE-----eccCCCCCC----CHHHHHHHHhcCCCCCeecc
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-----LTDEKYFKG----SFENLEAVRSAGVKCPLLCK  245 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV-----LTD~~fF~G----S~edL~~VR~a~v~lPVLrK  245 (355)
                      +++.+||.     |  ..+....-..++|+...+.||.++=.     -|-+.-|+|    .+..|.++++. ..+|++. 
T Consensus        92 ~~~~~IAG-----P--CsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~-~Gl~v~t-  162 (335)
T PRK08673         92 GKPVVIAG-----P--CSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREE-TGLPIVT-  162 (335)
T ss_pred             CceEEEEe-----c--CccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHH-cCCcEEE-
Confidence            34667777     3  22333334567888888899985533     366677888    36677777774 7899998 


Q ss_pred             ccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcc---CCCeEEEeeCCC
Q 018446          246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRN  319 (355)
Q Consensus       246 DFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~l---~ga~iIGINNRd  319 (355)
                       =+.|+.|+..+..+ +|.+-+=+.-+..   ..|++.+-++|.-+++.-.   |.+|+..|.+.   .|..=|.+-.|-
T Consensus       163 -ev~d~~~~~~l~~~-vd~lqIgAr~~~N---~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG  237 (335)
T PRK08673        163 -EVMDPRDVELVAEY-VDILQIGARNMQN---FDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERG  237 (335)
T ss_pred             -eeCCHHHHHHHHHh-CCeEEECcccccC---HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECC
Confidence             46799999999988 8866555555555   4578888899999999976   78998877532   244434444454


Q ss_pred             CCcc------ccChhhHHhh
Q 018446          320 LETF------EVDNSNTKKL  333 (355)
Q Consensus       320 L~Tf------evDl~~t~~L  333 (355)
                      ..||      .+|+..-..|
T Consensus       238 ~~tf~~~~~~~ldl~ai~~l  257 (335)
T PRK08673        238 IRTFETATRNTLDLSAVPVI  257 (335)
T ss_pred             CCCCCCcChhhhhHHHHHHH
Confidence            4444      4555544444

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=80.42  E-value=3.1  Score=42.12  Aligned_cols=71  Identities=25%  Similarity=0.299  Sum_probs=53.0

Q ss_pred             HHHHHHHHcCceEEEEec-cCCC---CCCCHHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          201 EIARSYEKGGAACLSILT-DEKY---FKGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLT-D~~f---F~GS~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      +.|+...+.||++|.|-- -...   -..+++.|..++++ +  ++||+.-==|-.+..|.+|.++|||+|.+=-.+|
T Consensus       233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a-~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l  309 (351)
T cd04737         233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEA-VNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVL  309 (351)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHH-hCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            567777788999998831 0111   12346788888875 5  6999999999999999999999999987644443

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=80.41  E-value=8.7  Score=38.17  Aligned_cols=72  Identities=21%  Similarity=0.316  Sum_probs=53.2

Q ss_pred             HHHHHHHHHcCceEEEEeccC------------------CCCCC----CHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446          200 VEIARSYEKGGAACLSILTDE------------------KYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA  257 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~------------------~fF~G----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA  257 (355)
                      .+.|+..++.|+++|-|-.-.                  .||.+    ..+.|..+++..+++||+.--=|-++.++.+|
T Consensus       193 ~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~ka  272 (333)
T TIGR02151       193 KEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKA  272 (333)
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHH
Confidence            578999999999999985421                  11111    12456666652368999999999999999999


Q ss_pred             HHcCCcchHHHHhc
Q 018446          258 RTKGADAVLLIAAV  271 (355)
Q Consensus       258 r~~GADAVLLIaai  271 (355)
                      ..+|||+|-+=-.+
T Consensus       273 LalGAd~V~igr~~  286 (333)
T TIGR02151       273 IALGADAVGMARPF  286 (333)
T ss_pred             HHhCCCeehhhHHH
Confidence            99999999873333

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=80.33  E-value=4.3  Score=40.08  Aligned_cols=64  Identities=13%  Similarity=0.107  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhccCCCeEEEee
Q 018446          250 DAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       250 dpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~l~ga~iIGIN  316 (355)
                      +.-|..+|..+|||.|+|  .-++++++++.+++..+.+..+++|+.   |.+-+...... |+++|-+-
T Consensus       198 tleqa~ea~~agaDiI~L--Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~t-GvD~Is~g  264 (284)
T PRK06096        198 TPKEAIAALRAQPDVLQL--DKFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADC-GIRLFITS  264 (284)
T ss_pred             CHHHHHHHHHcCCCEEEE--CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhc-CCCEEEEC
Confidence            788999999999999998  778899999999988777788999998   67777776665 89988553

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=80.33  E-value=3.4  Score=40.11  Aligned_cols=79  Identities=14%  Similarity=0.373  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHhcCCCCC-eecccc------ccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe--
Q 018446          225 GSFENLEAVRSAGVKCP-LLCKEF------IVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV--  295 (355)
Q Consensus       225 GS~edL~~VR~a~v~lP-VLrKDF------IIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV--  295 (355)
                      .-++.+.++|+. .++| ||+--+      .++.| +.+++.+|+|+|++-  -|+.++..++.+.|++.||+.+.=|  
T Consensus        78 ~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G~e~F-~~~~~~aGvdgviip--DLP~ee~~~~~~~~~~~gi~~I~lv~P  153 (263)
T CHL00200         78 KILSILSEVNGE-IKAPIVIFTYYNPVLHYGINKF-IKKISQAGVKGLIIP--DLPYEESDYLISVCNLYNIELILLIAP  153 (263)
T ss_pred             HHHHHHHHHhcC-CCCCEEEEecccHHHHhCHHHH-HHHHHHcCCeEEEec--CCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence            458889999974 7889 444333      22222 899999999997543  4567789999999999999987655  


Q ss_pred             C-CHHHHHHHhcc
Q 018446          296 H-DEREMDRVLGI  307 (355)
Q Consensus       296 H-~~eELerAl~l  307 (355)
                      + +.+.+++..+.
T Consensus       154 tT~~eri~~i~~~  166 (263)
T CHL00200        154 TSSKSRIQKIARA  166 (263)
T ss_pred             CCCHHHHHHHHHh
Confidence            3 35677676554

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=80.22  E-value=17  Score=33.65  Aligned_cols=132  Identities=17%  Similarity=0.200  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCC-----CCCCCHHHHHHHHhcCCCCCe--eccccccCHHHHHHHHHcCCcchHHHHh
Q 018446          198 DPVEIARSYEKGGAACLSILTDEK-----YFKGSFENLEAVRSAGVKCPL--LCKEFIVDAWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~-----fF~GS~edL~~VR~a~v~lPV--LrKDFIIdpyQI~eAr~~GADAVLLIaa  270 (355)
                      +-.++++...+.|...|=|=.=..     .+...++.++.+++...++++  |++-   ..-.+..++.+|+|.|.+...
T Consensus        20 ~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~---~~~~i~~a~~~g~~~i~i~~~   96 (265)
T cd03174          20 DKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN---REKGIERALEAGVDEVRIFDS   96 (265)
T ss_pred             HHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC---chhhHHHHHhCCcCEEEEEEe
Confidence            344667777777777765543222     114456667777764212333  3321   166788888899988877766


Q ss_pred             cC--------------CHHHHHHHHHHHHHcCCcEEEEe-------CCHHHHHH----HhccCCCeEEEeeCCCCCcccc
Q 018446          271 VL--------------PDLDIRYMTKICKLLGLTALVEV-------HDEREMDR----VLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       271 iL--------------~~~~L~~L~~~A~~LGLeaLVEV-------H~~eELer----Al~l~ga~iIGINNRdL~Tfev  325 (355)
                      .-              .-+.....+++|++.|+++-+-+       +|.+++..    +.++ |++.|.+..-   +-..
T Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~~~i~l~Dt---~G~~  172 (265)
T cd03174          97 ASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA-GADEISLKDT---VGLA  172 (265)
T ss_pred             cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc-CCCEEEechh---cCCc
Confidence            54              24567788899999999988877       66666543    4444 8888877543   2235


Q ss_pred             ChhhHHhhhcc
Q 018446          326 DNSNTKKLLEG  336 (355)
Q Consensus       326 Dl~~t~~L~~~  336 (355)
                      .++...+++..
T Consensus       173 ~P~~v~~li~~  183 (265)
T cd03174         173 TPEEVAELVKA  183 (265)
T ss_pred             CHHHHHHHHHH
Confidence            56666666554

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=80.21  E-value=1.1  Score=47.31  Aligned_cols=88  Identities=22%  Similarity=0.177  Sum_probs=57.5

Q ss_pred             EeEeeecCCCC-CCCCCCCCHHHHHHHHHHcCceEE-------EEeccCCCCCCC---HHHHHHHHhc--------CCCC
Q 018446          180 IAEVKKASPSR-GILREDFDPVEIARSYEKGGAACL-------SILTDEKYFKGS---FENLEAVRSA--------GVKC  240 (355)
Q Consensus       180 IAEvKRaSPSk-G~I~~~~Dp~~iA~~Ye~~GAaaI-------SVLTD~~fF~GS---~edL~~VR~a--------~v~l  240 (355)
                      |.++|+..|.. -++..+.--.+-|+...++||++|       |++|-..-.++.   +.-+..++++        +..+
T Consensus       274 i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~  353 (502)
T PRK07107        274 LDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYI  353 (502)
T ss_pred             HHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcc
Confidence            45555555521 122222222346667778899999       567776555443   3333333332        2348


Q ss_pred             CeeccccccCHHHHHHHHHcCCcchHH
Q 018446          241 PLLCKEFIVDAWQIYYARTKGADAVLL  267 (355)
Q Consensus       241 PVLrKDFIIdpyQI~eAr~~GADAVLL  267 (355)
                      ||++.-=|-.+..|..|.++|||+|.+
T Consensus       354 ~viadgGir~~gdi~KAla~GA~~vm~  380 (502)
T PRK07107        354 PICSDGGIVYDYHMTLALAMGADFIML  380 (502)
T ss_pred             eEEEcCCCCchhHHHHHHHcCCCeeee
Confidence            999999999999999999999999976

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=80.20  E-value=4.3  Score=39.76  Aligned_cols=141  Identities=15%  Similarity=0.120  Sum_probs=91.0

Q ss_pred             CCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCce----EE--EEeccCCC--CCCC-HH
Q 018446          158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAA----CL--SILTDEKY--FKGS-FE  228 (355)
Q Consensus       158 pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAa----aI--SVLTD~~f--F~GS-~e  228 (355)
                      ..++.|..++++      ....|+.=.|..|.-       -+.+.-..+. ||+.    .+  +||-..+|  |-|+ .+
T Consensus       105 T~t~~~v~~~~~------~~~~i~~TRKt~Pg~-------r~~~k~Av~~-GGg~~HR~gL~d~vlikdnHi~~~g~i~~  170 (273)
T PRK05848        105 TLTSRYVEALES------HKVKLLDTRKTRPLL-------RIFEKYSVRN-GGASNHRLGLDDCLMLKDTHLKHIKDLKE  170 (273)
T ss_pred             HHHHHHHHHhcC------CCeEEEecCCCCcch-------hHHHHHHHHh-CCCccccCCchhhhCcCHHHHHHHCcHHH
Confidence            346778887754      235778777777742       2222222343 4443    23  46666664  3355 45


Q ss_pred             HHHHHHhcCC-CCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHH
Q 018446          229 NLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRV  304 (355)
Q Consensus       229 dL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerA  304 (355)
                      .+..+|+... ..+|.-  -+=.--|..+|..+|||.|+|  .=.+.+++++.++......-.+++|+.   |++.+...
T Consensus       171 ~v~~~k~~~p~~~~I~V--Ev~tleea~~A~~~GaDiI~L--Dn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~y  246 (273)
T PRK05848        171 FIQHARKNIPFTAKIEI--ECESLEEAKNAMNAGADIVMC--DNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAY  246 (273)
T ss_pred             HHHHHHHhCCCCceEEE--EeCCHHHHHHHHHcCCCEEEE--CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHH
Confidence            5777776411 122222  233778999999999998885  556788888888876554556778875   88999998


Q ss_pred             hccCCCeEEEeeC
Q 018446          305 LGIEGIELIGINN  317 (355)
Q Consensus       305 l~l~ga~iIGINN  317 (355)
                      ..+ |+++|.+-.
T Consensus       247 a~~-GvD~IsvG~  258 (273)
T PRK05848        247 AKS-GVDAISSGS  258 (273)
T ss_pred             HHc-CCCEEEeCh
Confidence            886 999998753

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=80.02  E-value=7.3  Score=38.90  Aligned_cols=74  Identities=18%  Similarity=0.158  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHcCceEEEEecc---------C------CCCCC------CHHHHHHHHhcCC--CCCeeccccccCHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTD---------E------KYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQI  254 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD---------~------~fF~G------S~edL~~VR~a~v--~lPVLrKDFIIdpyQI  254 (355)
                      |+.++|+..+++||++|+...-         +      ..+.|      ++..+..+++. +  ++||.-===|.++-|+
T Consensus       225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~-~~~~ipiig~GGI~~~~da  303 (335)
T TIGR01036       225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAE-LQGRLPIIGVGGISSAQDA  303 (335)
T ss_pred             HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHH-hCCCCCEEEECCCCCHHHH
Confidence            5889999999999999986321         1      11112      24566666664 4  6899988889999999


Q ss_pred             HHHHHcCCcchHHHHhcC
Q 018446          255 YYARTKGADAVLLIAAVL  272 (355)
Q Consensus       255 ~eAr~~GADAVLLIaaiL  272 (355)
                      ++...+|||+|-+--+++
T Consensus       304 ~e~l~aGA~~Vqv~ta~~  321 (335)
T TIGR01036       304 LEKIRAGASLLQIYSGFI  321 (335)
T ss_pred             HHHHHcCCcHHHhhHHHH
Confidence            999999999999877764

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	355
3tsm_A	272	Crystal Structure Of Indole-3-Glycerol Phosphate Sy		3e-34
1pii_A	452	Three-Dimensional Structure Of The Bifunctional Enz		9e-31
1jcm_P	259	Trpc Stability Mutant Containing An Engineered Disu		1e-30
3qja_A	272	Crystal Structure Of The Mycobacterium Tuberculosis		6e-27
4fb7_A	275	The Apo Form Of Idole-3-Glycerol Phosphate Synthase		2e-25
1vc4_A	254	Crystal Structure Of Indole-3-Glycerol Phosphate Sy		8e-24
1lbf_A	247	Crystal Structure Of Indole-3-Glycerol Phosphate Sy		1e-19
1igs_A	248	Indole-3-Glycerolphosphate Synthase From Sulfolobus		1e-19
2c3z_A	222	Crystal Structure Of A Truncated Variant Of Indole-		1e-18
3uz5_A	252	Designed Protein Ke59 R13 311H Length = 252		7e-17
1j5t_A	242	Crystal Structure Of Indole-3-glycerol Phosphate Sy		7e-16
1i4n_A	251	Crystal Structure Of Indoleglycerol Phosphate Synth		1e-15
4a29_A	258	Structure Of The Engineered Retro-Aldolase Ra95.0 L		1e-15
4a2s_A	258	Structure Of The Engineered Retro-aldolase Ra95.5 L		2e-15
3hoj_A	248	Crystal Structure Of A Novel Engineered Retroaldola		3e-15
3uyc_A	249	Designed Protein Ke59 R8_27A Length = 249		3e-15
4a2r_A	258	Structure Of The Engineered Retro-Aldolase Ra95.5-5		5e-15
3tc6_A	258	Crystal Structure Of Engineered Protein. Northeast		5e-15
3uy8_A	247	Designed Protein Ke59 R5_115F Length = 247		1e-14
4ijb_A	256	Crystal Structure Of Engineered Protein, Northeast		1e-14
3nyz_A	261	Crystal Structure Of Kemp Elimination Catalyst 1a53		1e-14
3tc7_A	258	Crystal Structure Of Engineered Protein. Northeast		2e-14
3uy7_A	252	Designed Protein Ke59 R1 710H WITH G130S MUTATION L		2e-14
3uxa_A	252	Designed Protein Ke59 R1 710H Length = 252		3e-14
3o6y_X	258	Robust Computational Design, Optimization, And Stru		1e-12
3nxf_A	258	Robust Computational Design, Optimization, And Stru		2e-12

>pdb|3TSM|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase From Brucella Melitensis Length = 272

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 114/185 (61%), Gaps = 2/185 (1%)
Query: 120 GNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPAL 179
           G+   +IL +I  +K  E+   K R  L  LK    +    R F+ AL  A +  G  AL
Sbjct: 3   GSMSTDILRKIEAYKREEIAAAKARLALDELKARTRDQSAPRGFLKAL-EAKRAAGQFAL 61
Query: 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK 239
           IAE+KKASPS+G++R DFDP  +A++YE+GGAACLS+LTD   F+G+ E L A R A   
Sbjct: 62  IAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA-CS 120
Query: 240 CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDER 299
            P L K+F+ D +Q+Y AR+ GAD +L+I A + D   + +      LG+ AL+EVHDE 
Sbjct: 121 LPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEA 180
Query: 300 EMDRV 304
           EM+R 
Sbjct: 181 EMERA 185

>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme Phosphoribosylanthranilate Isomerase: Indoleglycerolphosphate Synthase From Escherichia Coli Refined At 2.0 Angstroms Resolution Length = 452

Iteration: 1
 Score =  130 bits (328), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/180 (43%), Positives = 108/180 (60%), Gaps = 9/180 (5%)
Query: 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEV 183
           + +L +IV  K + V   KQ++PL+  +N +   P  R F  AL  A  RT   A I E 
Sbjct: 2   QTVLAKIVADKAIWVEARKQQQPLASFQNEVQ--PSTRHFYDALQGA--RT---AFILEC 54
Query: 184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
           KKASPS+G++R+DFDP  IA  Y K  A+ +S+LTDEKYF+GSF  L  V     + P+L
Sbjct: 55  KKASPSKGVIRDDFDPARIAAIY-KHYASAISVLTDEKYFQGSFNFLPIVSQIAPQ-PIL 112
Query: 244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
           CK+FI+D +QIY AR   ADA LL+ +VL D   R +  +   L +  L EV +E E +R
Sbjct: 113 CKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQER 172

>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered Disulphide Bridge And In Complex With A Cdrp-Related Substrate Length = 259

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 107/178 (60%), Gaps = 9/178 (5%)
Query: 126 ILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKK 185
           +L +IV  K + V   KQ++PL+  +N +   P  R F  AL  A  RT   A I E KK
Sbjct: 4   VLAKIVADKAIWVEARKQQQPLASFQNEVQ--PSTRHFYDALQGA--RT---AFILECKK 56
Query: 186 ASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK 245
           ASPS+G++R+DFDP  IA  Y K  A+ +S+LTDEKYF+GSF  L  V     + P+LCK
Sbjct: 57  ASPSKGVIRDDFDPARIAAIY-KHYASAISVLTDEKYFQGSFNFLPIVSQIAPQ-PILCK 114
Query: 246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
           +FI+D +QIY AR   ADA LL+ +VL D   R +  +   L +  L EV +E E +R
Sbjct: 115 DFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQER 172

>pdb|3QJA|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Indole-3-Glycerol Phosphate Synthase (Trpc) In Apo Form Length = 272

Iteration: 1
 Score =  118 bits (295), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 113/182 (62%), Gaps = 6/182 (3%)
Query: 122 TPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIA 181
           +P  +L+ I+     +V   +    LS +K A   APP  D    +MAA +  G+  +IA
Sbjct: 2   SPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLD----VMAALREPGI-GVIA 56
Query: 182 EVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241
           EVK+ASPS G L    DP ++A++Y+ GGA  +S++T+++ F+GS ++L+AVR A V  P
Sbjct: 57  EVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVR-ASVSIP 115
Query: 242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREM 301
           +L K+F+V  +QI+ AR  GAD +LLI A L    +  M    + LG+TALVEVH E+E 
Sbjct: 116 VLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEA 175
Query: 302 DR 303
           DR
Sbjct: 176 DR 177

>pdb|4FB7|A Chain A, The Apo Form Of Idole-3-Glycerol Phosphate Synthase (Trpc) Form Mycobacterium Tuberculosis Length = 275

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 110/186 (59%), Gaps = 6/186 (3%)
Query: 118 NEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLP 177
           +   +P  +L+ I+     +V   +    LS +K A   APP  D   AL    +  G+ 
Sbjct: 1   SNAXSPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVXAAL----REPGI- 55
Query: 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAG 237
            +IAEVK+ASPS G L    DP ++A++Y+ GGA  +S++T+++ F+GS ++L+AVR A 
Sbjct: 56  GVIAEVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVR-AS 114
Query: 238 VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHD 297
           V  P+L K+F+V  +QI+ AR  GAD +LLI A L    +       + LG TALVEVH 
Sbjct: 115 VSIPVLRKDFVVQPYQIHEARAHGADXLLLIVAALEQSVLVSXLDRTESLGXTALVEVHT 174
Query: 298 EREMDR 303
           E+E DR
Sbjct: 175 EQEADR 180

>pdb|1VC4|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase (Trpc) From Thermus Thermophilus At 1.8 A Resolution Length = 254

Iteration: 1
 Score =  107 bits (268), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 88/130 (67%), Gaps = 4/130 (3%)
Query: 173 RTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEA 232
           R GL ++IAEVK+ SPS G++RE  DPVE A +Y +GGA  +S+LT+   F GS  +L+ 
Sbjct: 43  RPGL-SVIAEVKRQSPSEGLIRE-VDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKR 100
Query: 233 VRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL 292
           VR A V  PLL K+F+VD + +  AR  GA A LLI A+L +L   Y+ +  + LGL AL
Sbjct: 101 VREA-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYLEE-ARRLGLEAL 158
Query: 293 VEVHDEREMD 302
           VEVH ERE++
Sbjct: 159 VEVHTERELE 168

>pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Syntase (Igps)with Reduced 1-(O-Caboxyphenylamino)-1-Deoxyribulose 5-Phosphate (Rcdrp) Length = 247

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W KDV   QL  RRP            P       ++  N+R  + A+IAE K+ SPS  
Sbjct: 7   WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAEYKRKSPSG- 58
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E ++  E+  A  LSILT+EKYF GS+E L  + S+ V  P+L K+FIV  
Sbjct: 59  -LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGSYETLRKIASS-VSIPILMKDFIVKE 115
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
            QI  A   GAD VLLI  +L + ++  + +  +  G+  L+E++DE ++D +       
Sbjct: 116 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD-IALRIGAR 174
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
                     T E++  N +KL+
Sbjct: 175 FIGINSRDLETLEINKENQRKLI 197

>pdb|1IGS|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus Solfataricus At 2.0 A Resolution Length = 248

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W KDV   QL  RRP            P       ++  N+R  + A+IAE K+ SPS  
Sbjct: 8   WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAEYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E ++  E+  A  LSILT+EKYF GS+E L  + S+ V  P+L K+FIV  
Sbjct: 60  -LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGSYETLRKIASS-VSIPILMKDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
            QI  A   GAD VLLI  +L + ++  + +  +  G+  L+E++DE ++D +       
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
                     T E++  N +KL+
Sbjct: 176 FIGINSRDLETLEINKENQRKLI 198

>pdb|2C3Z|A Chain A, Crystal Structure Of A Truncated Variant Of Indole-3- Glycerol Phosphate Synthase From Sulfolobus Solfataricus Length = 222

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Query: 167 LMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS 226
           ++  N+R  + A+IAE K+ SPS   L  + DP+E ++  E+  A  LSILT+EKYF GS
Sbjct: 11  ILEFNKR-NITAIIAEYKRKSPSG--LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGS 66
Query: 227 FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL 286
           +E L  + S+ V  P+L K+FIV   QI  A   GAD VLLI  +L + ++  + +  + 
Sbjct: 67  YETLRKIASS-VSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARS 125
Query: 287 LGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLL 334
            G+  L+E++DE ++D +                 T E++  N +KL+
Sbjct: 126 YGMEPLIEINDENDLD-IALRIGARFIGINSRDLETLEINKENQRKLI 172

>pdb|3UZ5|A Chain A, Designed Protein Ke59 R13 311H Length = 252

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W +DV   Q  QRRP            P       ++  N+R  + A++A  K+ SPS  
Sbjct: 8   WLEDV--VQRSQRRP----SVRASRQRPIISLKERILEFNKRN-ITAIMAVYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E A+  E+G    L+ILT+EKYF GS+E+L  + S+ V  P+L  + IV  
Sbjct: 60  -LDVERDPIEYAKFMERG-VVGLAILTEEKYFNGSYEDLRKIASS-VSVPILMWDIIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
            QI  A   GAD V LI  +L + ++  + +  + LG+   + +HDE ++D +       
Sbjct: 117 SQIDDAYNLGADTVGLIVKILTERELESLLEYARSLGMEPAIVIHDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
                     T E++N N +KL+
Sbjct: 176 FIIITSHDLETLEINNENQRKLI 198

>pdb|1J5T|A Chain A, Crystal Structure Of Indole-3-glycerol Phosphate Synthase (tm0140) From Thermotoga Maritima At 3.0 A Resolution Length = 242

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV 238
           +IAE KKASPS G +  D    +  R Y++   A +SILT++ YFKG    + A R+   
Sbjct: 34  IIAEFKKASPSAGDINADASLEDFIRMYDELADA-ISILTEKHYFKGDPAFVRAARNLTC 92
Query: 239 KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDE 298
           + P+L K+F +D  Q+  A + GADA+L+IA +L    I+ + +  + LG+ +LVEVH  
Sbjct: 93  R-PILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSR 151
Query: 299 REMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLL 334
            ++++V                 TFE+  +   +LL
Sbjct: 152 EDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELL 187

>pdb|1I4N|A Chain A, Crystal Structure Of Indoleglycerol Phosphate Synthase From Thermotoga Maritima Length = 251

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV 238
           +IAE KKASPS G +  D    +  R Y++   A +SILT++ YFKG    + A R+   
Sbjct: 43  IIAEFKKASPSAGDINADASLEDFIRMYDELADA-ISILTEKHYFKGDPAFVRAARNLTC 101
Query: 239 KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDE 298
           + P+L K+F +D  Q+  A + GADA+L+IA +L    I+ + +  + LG+ +LVEVH  
Sbjct: 102 R-PILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSR 160
Query: 299 REMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLL 334
            ++++V                 TFE+  +   +LL
Sbjct: 161 EDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELL 196

>pdb|4A29|A Chain A, Structure Of The Engineered Retro-Aldolase Ra95.0 Length = 258

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 11/171 (6%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W +DV   QL  RRP            P       ++  N+R  + A+IA  ++ SPS  
Sbjct: 8   WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIAVYERKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E A+  E+  A  LSI T+EKYF GS+E L  + S+ V  P+L  +FIV  
Sbjct: 60  -LDVERDPIEYAKFMERY-AVGLSITTEEKYFNGSYETLRKIASS-VSIPILMSDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
            QI  A   GAD VLLI  +L + ++  + +  +  G+  L+ ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD 167

>pdb|4A2S|A Chain A, Structure Of The Engineered Retro-aldolase Ra95.5 Length = 258

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 11/171 (6%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W +DV   QL  RRP            P       ++  N+R  + A+IA   + SPS  
Sbjct: 8   WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIAYYSRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E A+  E+  A  LSI T+EKYF GS+E L  + S+ V  P+L  +FIV  
Sbjct: 60  -LDVERDPIEYAKFMERY-AVGLSIKTEEKYFNGSYETLRKIASS-VSIPILMSDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
            QI  A   GAD VLLI  +L + ++  + +  +  G+  L+ ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD 167

>pdb|3HOJ|A Chain A, Crystal Structure Of A Novel Engineered Retroaldolase: Ra-22 Length = 248

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W KDV   QL  RRP            P       ++  N+R  + A+IA   + SPS  
Sbjct: 8   WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAGYDRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E ++  E+  A  LSI T+EKYF GS+E L  + S+ V  P+L  +FIV  
Sbjct: 60  -LDVERDPIEYSKFMERY-AVGLSITTEEKYFNGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
            QI  A   GAD V LI  +L + ++  + +  +  G+  L++++DE ++D +       
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPLIKINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
                     T E++  N +KL+
Sbjct: 176 FIGIVSADWETLEINKENQRKLI 198

>pdb|3UYC|A Chain A, Designed Protein Ke59 R8_27A Length = 249

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 18/206 (8%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGA---LMAANQRTGLPALIAEVKKASP 188
           W +DV   QL  RRP S+      +A   R  I     ++  N+R    A+IA  K+ SP
Sbjct: 8   WLEDV--VQLSLRRP-SL------HASRQRPIISLRERILEFNKRNN-TAIIAVYKRKSP 57
Query: 189 SRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI 248
           S   L  + DP+E A+  E+G    L+ILT+EKYF GS+E+L  + S+ V  P+L  + I
Sbjct: 58  SG--LNVERDPIEYAKFMERG-VVGLAILTEEKYFNGSYEDLRKIASS-VSIPILMWDII 113
Query: 249 VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXX 308
           V   QI  A   GAD V LI  +L + +++ + +  +  G+   + ++DE ++D +    
Sbjct: 114 VKESQIDDAYNLGADTVGLIVKILTERELKSLLEYARSYGMEPAIVINDENDLD-IALRI 172
Query: 309 XXXXXXXXXXXXXTFEVDNSNTKKLL 334
                        T E++  N +KL+
Sbjct: 173 GARFIIISSHDLETLEINKENQRKLI 198

>pdb|4A2R|A Chain A, Structure Of The Engineered Retro-Aldolase Ra95.5-5 Length = 258

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGA---LMAANQRTGLPALIAEVKKASP 188
           W +DV   QL  RRP         +A   R  I     ++  N ++ + A+IA   + SP
Sbjct: 8   WLEDV--VQLSLRRPSV-------HASRQRPIISLNERILEFN-KSNITAIIAYYTRKSP 57
Query: 189 SRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI 248
           S   L  + DP+E A+  E+  A  LSI T+EKYF GS+E L  + S+ V  P+L  +FI
Sbjct: 58  SG--LDVERDPIEYAKFMERY-AVGLSIKTEEKYFNGSYEMLRKIASS-VSIPILMNDFI 113
Query: 249 VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
           V   QI  A   GAD VLLI  +L + ++  + +  +  G+  L+ ++DE ++D
Sbjct: 114 VKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD 167

>pdb|3TC6|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or63 Length = 258

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W +DV   QL  RRP            P       ++  N+R  + A+IAE K+ SPS  
Sbjct: 8   WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIAEYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E A+  E+  A  L ILT+EKYF GS+E L  + S+ V  P+   + IV  
Sbjct: 60  -LDVERDPIEYAKFMERY-AVGLKILTEEKYFNGSYETLRKIASS-VSIPIAMSDAIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
            QI  A   GAD V+LI  +L + ++  + +  +  G+  L+ ++DE ++D +       
Sbjct: 117 SQIDDAYNLGADTVVLIVKILTERELESLLEYARSYGMEPLIVINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
                     T E++  N +KL+
Sbjct: 176 FIGIESRDWETLEINKENQRKLI 198

>pdb|3UY8|A Chain A, Designed Protein Ke59 R5_115F Length = 247

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W +DV   QL  RRP   L+ +     P       ++  N+R    A+IA  K+ SPS  
Sbjct: 7   WLEDV--VQLSLRRP--SLRAS--RQRPIISLKERILEFNKRNN-TAIIAVYKRKSPSG- 58
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E A+  E+  A  L+ILT+EKYF GS+E+L  + S+ V  P+L  +FIV  
Sbjct: 59  -LDVERDPIEYAKFMERY-AVGLAILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKE 115
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
            QI  A   GAD V LI  +L + ++  + +  +  G+   + ++DE ++D +       
Sbjct: 116 SQIDDAYNLGADTVGLIVKILTERELESLLEYARSYGMEPAIVINDENDLD-IALRIGAR 174
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
                     T E++  N +KL+
Sbjct: 175 FIIISSHDLETLEINKENQRKLI 197

>pdb|4IJB|A Chain A, Crystal Structure Of Engineered Protein, Northeast Structural Genomics Consortium Target Or288 Length = 256

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 98/203 (48%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W +DV   QL  RRP            P       ++  N+R  + A+IA   + SPS  
Sbjct: 8   WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIALYXRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E A+  E+  A  LSI+T+EKYF GS+E L  + S+ V  P+L  +FIV  
Sbjct: 60  -LDVERDPIEYAKFXERY-AVGLSIVTEEKYFNGSYETLRKIASS-VSIPILXNDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
            QI  A   GAD V L   +L + ++  + +  +  G   L+E++DE ++D +       
Sbjct: 117 SQIDDAYNLGADTVALKVKILTERELESLLEYARSYGXEPLIEINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
                     T E++  N +KL+
Sbjct: 176 FIGIWSQDNETLEINKENQRKLI 198

>pdb|3NYZ|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2 Length = 261

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W KDV   QL  RRP            P       ++  N+R  + A+IA  K+ SPS  
Sbjct: 8   WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKRN-ITAIIAAYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E ++  E+  A  L+I T+EKYF GS+E L  + S+ V  P+L  +FIV  
Sbjct: 60  -LDVERDPIEYSKFMERY-AVGLAIATEEKYFNGSYETLRKIASS-VSIPILMWDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
            QI  A   GAD V LI  +L + ++  + +  +  G+   + ++DE ++D +       
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPAIVINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
                     T E++  N +KL+
Sbjct: 176 FIEIASRDLETLEINKENQRKLI 198

>pdb|3TC7|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or62 Length = 258

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W +DV   QL  RRP            P       ++  N+R  + A+IAE K+  PS  
Sbjct: 8   WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIAEYKRKDPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E A+  E+  A  L I T+EKYF GS+E L  + S+ V  P+L  +FIV  
Sbjct: 60  -LDVERDPIEYAKFMERY-AVGLFISTEEKYFNGSYETLRKIASS-VSIPILMYDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
            QI  A   GAD V LI  +L + ++  + +  +  G+  L+ ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPLIIINDENDLD 167

>pdb|3UY7|A Chain A, Designed Protein Ke59 R1 710H WITH G130S MUTATION Length = 252

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 10/198 (5%)
Query: 137 EVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILRED 196
           +V QL  RRP   L+ +     P       ++  N+R  + A+IA  K+ SPS   L  +
Sbjct: 11  DVVQLSLRRP--SLRAS--RQRPIISLRERILEFNKR-NITAIIAVYKRKSPSG--LDVE 63
Query: 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256
            DP+E A+  E+  A  L ILT+EKYF GS+E+L  + S+ V  P+L  +FIV   QI  
Sbjct: 64  RDPIEYAKFMERY-AVGLVILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKESQIDD 121
Query: 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXX 316
           A   GAD V LI  +L + ++  + +  +  G+   + ++DE ++D +            
Sbjct: 122 AYNLGADTVSLIVKILTERELESLLEYARSYGMEPAIVINDEEDLD-IALRIGARIIIIS 180
Query: 317 XXXXXTFEVDNSNTKKLL 334
                T E++  N +KL+
Sbjct: 181 SRDLETLEINKENQRKLI 198

>pdb|3UXA|A Chain A, Designed Protein Ke59 R1 710H Length = 252

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 16/201 (7%)
Query: 137 EVTQLKQRRPLSMLKNALDNAPPARDFIGA---LMAANQRTGLPALIAEVKKASPSRGIL 193
           +V QL  RRP S+       A   R  I     ++  N+R  + A+IA  K+ SPS   L
Sbjct: 11  DVVQLSLRRP-SL------RASRQRPIISLRERILEFNKRN-ITAIIAVYKRKSPSG--L 60
Query: 194 REDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQ 253
             + DP+E A+  E+  A  L ILT+EKYF GS+E+L  + S+ V  P+L  +FIV   Q
Sbjct: 61  DVERDPIEYAKFMERY-AVGLVILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKESQ 118
Query: 254 IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXX 313
           I  A   GAD V LI  +L + ++  + +  +  G+   + ++DE ++D +         
Sbjct: 119 IDDAYNLGADTVGLIVKILTERELESLLEYARSYGMEPAIVINDEEDLD-IALRIGARII 177
Query: 314 XXXXXXXXTFEVDNSNTKKLL 334
                   T E++  N +KL+
Sbjct: 178 IISSRDLETLEINKENQRKLI 198

>pdb|3O6Y|X Chain X, Robust Computational Design, Optimization, And Structural Characterization Of Retroaldol Enzymes Length = 258

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W +DV   QL  RRP            P       ++  N+R  + A+IA   + SP   
Sbjct: 8   WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIATYMRKSPWG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E A+  E+  A  LSI T+EKY  GS+E L  + S+ V  P+L  +FIV  
Sbjct: 60  -LDVERDPIEYAKFMERY-AVGLSICTEEKYANGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
            QI  A   GAD V LI  +L + ++  + +  +  G+  +++++DE ++D +       
Sbjct: 117 SQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIKINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
                     T E++  N +KL+
Sbjct: 176 FIGICSRDWETLEINKENQRKLI 198

>pdb|3NXF|A Chain A, Robust Computational Design, Optimization, And Structural Characterization Of Retroaldol Enzymes Length = 258

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
           W +DV   QL  RRP            P       ++  N+R  + A+IA   + SP   
Sbjct: 8   WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIATYMRKSPWG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
            L  + DP+E A+  E+  A  LSI T+EKY  GS+E L  + S+ V  P+L  +FIV  
Sbjct: 60  -LDVERDPIEYAKFMERY-AVGLSICTEEKYANGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
            QI  A   GAD V LI  +L + ++  + +  +  G+  ++ ++DE ++D +       
Sbjct: 117 SQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIXINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
                     T E++  N +KL+
Sbjct: 176 FIGICSRDWETLEINKENQRKLI 198

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	1e-117
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	1e-112
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	1e-106
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	1e-100
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	6e-96
3uy7_A	252	KEMP eliminase KE59 R1 7/10H; structural genomics,	3e-90
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} Length = 272

 Score =  339 bits (871), Expect = e-117
 Identities = 99/238 (41%), Positives = 144/238 (60%), Gaps = 10/238 (4%)

Query: 120 GNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPAL 179
           G+   +IL +I  +K  E+   K R  L  LK    +    R F+ AL A  +  G  AL
Sbjct: 3   GSMSTDILRKIEAYKREEIAAAKARLALDELKARTRDQSAPRGFLKALEAK-RAAGQFAL 61

Query: 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK 239
           IAE+KKASPS+G++R DFDP  +A++YE+GGAACLS+LTD   F+G+ E L A R A   
Sbjct: 62  IAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA-CS 120

Query: 240 CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDER 299
            P L K+F+ D +Q+Y AR+ GAD +L+I A + D   + +      LG+ AL+EVHDE 
Sbjct: 121 LPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEA 180

Query: 300 EMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV--SGPFTR 355
           EM+R L +    L+G+NNRNL +FEV+ + +++L      ++     ++V  SG FT 
Sbjct: 181 EMERALKL-SSRLLGVNNRNLRSFEVNLAVSERLA-----KMAPSDRLLVGESGIFTH 232

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} Length = 272

 Score =  326 bits (837), Expect = e-112
 Identities = 87/222 (39%), Positives = 132/222 (59%), Gaps = 7/222 (3%)

Query: 122 TPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIA 181
           +P  +L+ I+     +V   +    LS +K A   APP  D + AL     R     +IA
Sbjct: 2   SPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVMAAL-----REPGIGVIA 56

Query: 182 EVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241
           EVK+ASPS G L    DP ++A++Y+ GGA  +S++T+++ F+GS ++L+AVR++ V  P
Sbjct: 57  EVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRAS-VSIP 115

Query: 242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREM 301
           +L K+F+V  +QI+ AR  GAD +LLI A L    +  M    + LG+TALVEVH E+E 
Sbjct: 116 VLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEA 175

Query: 302 DRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIR 343
           DR L   G ++IG+N R+L T +VD     ++  G    +IR
Sbjct: 176 DRALKA-GAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIR 216

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A Length = 452

 Score =  317 bits (815), Expect = e-106
 Identities = 88/233 (37%), Positives = 130/233 (55%), Gaps = 17/233 (7%)

Query: 125 NILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVK 184
            +L +IV  K + V   KQ++PL+  +N +   P  R F  AL     +    A I E K
Sbjct: 3   TVLAKIVADKAIWVEARKQQQPLASFQNEV--QPSTRHFYDAL-----QGARTAFILECK 55

Query: 185 KASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC 244
           KASPS+G++R+DFDP  IA  Y+   A+ +S+LTDEKYF+GSF  L  V       P+LC
Sbjct: 56  KASPSKGVIRDDFDPARIAAIYK-HYASAISVLTDEKYFQGSFNFLPIVSQI-APQPILC 113

Query: 245 KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRV 304
           K+FI+D +QIY AR   ADA LL+ +VL D   R +  +   L +  L EV +E E +R 
Sbjct: 114 KDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERA 173

Query: 305 LGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV--SGPFTR 355
           + + G +++GINNR+L    +D + T++L        +     ++  SG  T 
Sbjct: 174 IAL-GAKVVGINNRDLRDLSIDLNRTRELA-----PKLGHNVTVISESGINTY 220

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A Length = 251

 Score =  294 bits (756), Expect = e-100
 Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 21/231 (9%)

Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
           L EIV  K  ++ ++     +               F+  L    +      +IAE KKA
Sbjct: 3   LWEIVEAKKKDILEIDGENLIV--------QRRNHRFLEVLSGKER----VKIIAEFKKA 50

Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
           SPS G +  D    +  R Y++  A  +SILT++ YFKG    + A R+     P+L K+
Sbjct: 51  SPSAGDINADASLEDFIRMYDEL-ADAISILTEKHYFKGDPAFVRAARNL-TCRPILAKD 108

Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
           F +D  Q+  A + GADA+L+IA +L    I+ + +  + LG+ +LVEVH   ++++V  
Sbjct: 109 FYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFS 168

Query: 307 IEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV--SGPFTR 355
           +   ++IGIN R+L+TFE+  +   +LL      ++    ++V  SG    
Sbjct: 169 VIRPKIIGINTRDLDTFEIKKNVLWELL-----PLVPDDTVVVAESGIKDP 214

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 Length = 254

 Score =  284 bits (730), Expect = 6e-96
 Identities = 82/220 (37%), Positives = 118/220 (53%), Gaps = 20/220 (9%)

Query: 116 IQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTG 175
           ++ + +    +L EI   +  EV       P           P    F  AL        
Sbjct: 1   MRPDLSRVPGVLGEIARKRASEVAPYPLPEP-----------PSVPSFKEAL-----LRP 44

Query: 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS 235
             ++IAEVK+ SPS G++R + DPVE A +Y +GGA  +S+LT+   F GS  +L+ VR 
Sbjct: 45  GLSVIAEVKRQSPSEGLIR-EVDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVRE 103

Query: 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV 295
           A V  PLL K+F+VD + +  AR  GA A LLI A+L +L   Y+ +  + LGL ALVEV
Sbjct: 104 A-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYL-EEARRLGLEALVEV 161

Query: 296 HDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE 335
           H ERE++  L   G E++GINNR+L T  ++     +L  
Sbjct: 162 HTERELEIALEA-GAEVLGINNRDLATLHINLETAPRLGR 200

>3uy7_A KEMP eliminase KE59 R1 7/10H; structural genomics, israel structural proteomics center, is barrel, lyase; 1.45A {Escherichia coli} PDB: 3uxd_A* 3uxa_A* 3nyz_A 3nz1_A* 3uy8_A 3uyc_A 3uzj_A 3uz5_A 1igs_A 1juk_A 1jul_A* 3tc7_A 3tc6_A 1a53_A* 1lbf_A* 1lbl_A* 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* ... Length = 252

 Score =  270 bits (692), Expect = 3e-90
 Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 10/209 (4%)

Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
           +   +     +V QL  RRP            P       ++  N+R  + A+IA  K+ 
Sbjct: 1   MPRYLKGALKDVVQLSLRRPSLRASRQ----RPIISLRERILEFNKR-NITAIIAVYKRK 55

Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
           SPS   +    DP+E A+  E   A  L ILT+EKYF GS+E+L  + S+ V  P+L  +
Sbjct: 56  SPSGLDVE--RDPIEYAKFME-RYAVGLVILTEEKYFNGSYEDLRKIASS-VSIPILMWD 111

Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
           FIV   QI  A   GAD V LI  +L + ++  + +  +  G+   + ++DE ++D  L 
Sbjct: 112 FIVKESQIDDAYNLGADTVSLIVKILTERELESLLEYARSYGMEPAIVINDEEDLDIALR 171

Query: 307 IEGIELIGINNRNLETFEVDNSNTKKLLE 335
           I G  +I I++R+LET E++  N +KL+ 
Sbjct: 172 I-GARIIIISSRDLETLEINKENQRKLIS 199

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 46/305 (15%), Positives = 92/305 (30%), Gaps = 72/305 (23%)

Query: 67  MEDAETALKAKEWEVGMLINEVAASQGIK----IRRRPPTGPPLHYVGP-----FQF--- 114
           ++D   ++ +KE E+  +I    A  G                  +V       ++F   
Sbjct: 38  VQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 115 RIQNEGNTPRNILEEIV-----WHKDVEVT---QLKQRRPLSMLKNALDNAPPARDFI-- 164
            I+ E   P  +    +      + D +V     + + +P   L+ AL    PA++ +  
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 165 GALMAANQRTGLPALIAEVKKASP-----SRGI----LREDFDPVEIARSYEKGGAACLS 215
           G  +     +G   +  +V  +          I    L+    P  +    +K     L 
Sbjct: 157 G--VLG---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-----LL 206

Query: 216 ILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI------A 269
              D  +   S ++   ++        L    I    +         +  LL+      A
Sbjct: 207 YQIDPNWTSRS-DHSSNIK--------LRIHSIQAELRRLLKSKPYENC-LLVLLNVQNA 256

Query: 270 AVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSN 329
                 ++      CK+L  T   +V      D +       +   ++    T   D   
Sbjct: 257 KAWNAFNLS-----CKILLTTRFKQV-----TDFLSAATTTHISLDHHS--MTLTPDEV- 303

Query: 330 TKKLL 334
            K LL
Sbjct: 304 -KSLL 307

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 44/273 (16%), Positives = 81/273 (29%), Gaps = 76/273 (27%)

Query: 58  DGSATISSVMEDAETALK----AKEWEVGMLI-NEVAASQGIKIRRRPPTGPPLHYVGPF 112
           D S+ I   +   +  L+    +K +E  +L+   V  ++                   F
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---------------AF 262

Query: 113 QF--RI----QNEGNTPRNILEEIVWHKDVEVTQ--LKQRRPLSMLKNALDNAP---PAR 161
               +I    + +  T   +      H  ++     L      S+L   LD  P   P  
Sbjct: 263 NLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 162 DFIGALMAANQRTGLP---ALIAEVKKASPSR--GILREDFDPVEIARSYEKGGAACLSI 216
                L      T  P   ++IAE  +   +        + D +           + L++
Sbjct: 322 ----VL------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE------SSLNV 365

Query: 217 LTDEKYFKGSFENLEAVRSAGVKCP--LLCK----------EFIVDAWQIYYARTKGADA 264
           L +   ++  F+ L +V       P  LL              +V+    Y    K    
Sbjct: 366 L-EPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 265 VLLIAAVLPDLDIRYMTKICKLLGLTALVEVHD 297
             +    +P +   Y+    KL    AL   H 
Sbjct: 424 STI---SIPSI---YLELKVKLENEYAL---HR 447

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	100.0
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	100.0
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	100.0
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	100.0
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	100.0
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	100.0
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	99.89
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	99.88
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	99.87
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	99.87
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	99.81
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	99.79
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	99.66
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	99.5
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	99.41
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	99.37
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	99.33
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	99.25
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.23
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.23
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	99.2
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	99.19
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	98.98
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	98.89
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	98.8
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	98.79
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	98.73
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	98.7
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	98.67
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	98.61
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	98.6
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	98.28
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	97.84
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	97.78
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	97.68
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	97.62
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	97.55
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	97.55
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	97.43
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	97.22
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.14
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.99
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	96.96
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.94
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.93
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	96.85
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	96.82
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	96.8
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	96.7
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	96.61
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	96.4
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.37
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	96.35
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	96.32
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	96.31
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	96.28
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	96.27
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	96.22
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	96.22
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	96.2
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	96.16
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	96.05
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	96.04
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	95.92
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	95.9
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	95.8
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	95.76
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	95.69
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	95.66
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	95.64
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	95.56
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	95.53
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	95.5
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	95.43
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	95.18
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	95.14
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	95.13
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	95.11
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	95.01
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	94.95
3g8r_A	350	Probable spore coat polysaccharide biosynthesis P;	94.84
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	94.74
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	94.71
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	94.7
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	94.61
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	94.59
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	94.26
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	94.14
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	94.12
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	94.09
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	94.0
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	93.91
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	93.82
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	93.67
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	93.66
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	93.65
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	93.5
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	93.48
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	93.47
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	93.39
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	93.38
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	93.07
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	93.05
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	93.04
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	92.98
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	92.98
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	92.89
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	92.84
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	92.84
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	92.82
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	92.77
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	92.72
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	92.62
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	92.56
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	92.56
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	92.55
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	92.47
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	92.46
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	92.21
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	92.12
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	92.12
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	92.04
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	91.97
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	91.95
2q02_A	272	Putative cytoplasmic protein; structural genomics,	91.94
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	91.85
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	91.83
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	91.79
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	91.78
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	91.77
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	91.74
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	91.44
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	91.37
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	91.27
2o55_A	258	Putative glycerophosphodiester phosphodiesterase;	91.24
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	91.19
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	91.16
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	91.13
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	91.05
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	90.97
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	90.54
1mdl_A	359	Mandelate racemase; isomerase, mandelate pathway,	90.41
3dx5_A	286	Uncharacterized protein ASBF; beta-alpha barrel, p	90.4
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	90.4
2og9_A	393	Mandelate racemase/muconate lactonizing enzyme; NY	90.29
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	90.29
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	90.22
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	90.18
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	90.17
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	89.92
2qgy_A	391	Enolase from the environmental genome shotgun sequ	89.86
1nu5_A	370	Chloromuconate cycloisomerase; enzyme, dehalogenat	89.82
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	89.79
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	89.71
3kws_A	287	Putative sugar isomerase; structural genomics, joi	89.7
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	89.6
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	89.53
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	89.52
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	89.52
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	89.49
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	89.48
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	89.42
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	89.26
2hzg_A	401	Mandelate racemase/muconate lactonizing enzyme/EN	89.26
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	89.23
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	89.21
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	89.08
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	89.07
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	88.99
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	88.95
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	88.94
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	88.76
1yx1_A	264	Hypothetical protein PA2260; structural genomics,	88.68
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	88.68
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	88.67
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	88.52
1tkk_A	366	Similar to chloromuconate cycloisomerase; epimeras	88.46
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	88.45
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	88.31
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	88.24
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	88.19
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	88.18
3dg3_A	367	Muconate cycloisomerase; muconate lactonizing enzy	87.99
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	87.95
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	87.93
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	87.91
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	87.89
2qde_A	397	Mandelate racemase/muconate lactonizing enzyme FA	87.85
2pp0_A	398	L-talarate/galactarate dehydratase; enolase superf	87.84
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	87.78
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	87.71
2p8b_A	369	Mandelate racemase/muconate lactonizing enzyme fam	87.7
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	87.64
2ox4_A	403	Putative mandelate racemase; enolase, dehydratase,	87.57
1sjd_A	368	N-acylamino acid racemase; lyase, isomerase; HET:	87.36
2ps2_A	371	Putative mandelate racemase/muconate lactonizing e	87.35
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	87.15
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	87.09
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	87.01
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	86.92
3ks6_A	250	Glycerophosphoryl diester phosphodiesterase; struc	86.91
3my9_A	377	Muconate cycloisomerase; structural genomics, PSI-	86.73
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	86.59
3cny_A	301	Inositol catabolism protein IOLE; xylose isomerase	86.57
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	86.38
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	86.33
3i4k_A	383	Muconate lactonizing enzyme; structural genomics,	86.28
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	86.14
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	86.01
3ozy_A	389	Putative mandelate racemase; beta-alpha barrel, en	85.99
1tzz_A	392	Hypothetical protein L1841; structural genomics, m	85.98
1i60_A	278	IOLI protein; beta barrel, structural genomics, PS	85.93
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	85.85
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	85.84
2poz_A	392	Putative dehydratase; octamer, structural genomics	85.77
4dwd_A	393	Mandelate racemase/muconate lactonizing enzyme, C	85.72
1r0m_A	375	N-acylamino acid racemase; isomerase; 1.30A {Deino	85.69
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	85.69
3jva_A	354	Dipeptide epimerase; enolase superfamily, isomeras	85.51
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	85.5
1vd6_A	224	Glycerophosphoryl diester phosphodiesterase; glyce	85.47
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	85.36
4djd_D	323	C/Fe-SP, corrinoid/iron-sulfur protein small subun	85.2
2zds_A	340	Putative DNA-binding protein; TIM-barrel fold, str	85.12
2gl5_A	410	Putative dehydratase protein; structural genomics,	85.12
2oz8_A	389	MLL7089 protein; structural genomics, unknown func	85.11
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	84.86
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	84.7
2qdd_A	378	Mandelate racemase/muconate lactonizing enzyme; en	84.69
3stp_A	412	Galactonate dehydratase, putative; PSI biology, st	84.49
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	84.43
2pz0_A	252	Glycerophosphoryl diester phosphodiesterase; glyce	84.32
3ngf_A	269	AP endonuclease, family 2; structural genomics, se	84.04
3i6e_A	385	Muconate cycloisomerase I; structural genomics, NY	84.04
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	84.01
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	83.88
3qc0_A	275	Sugar isomerase; TIM barrel, structural genomics,	83.68
2r8c_A	426	Putative amidohydrolase; unknown source, sargasso	83.64
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	83.62
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	83.56
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	83.53
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	83.42
3mqt_A	394	Mandelate racemase/muconate lactonizing protein; P	83.25
2qq6_A	410	Mandelate racemase/muconate lactonizing enzyme- li	83.05
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	82.98
4e5t_A	404	Mandelate racemase / muconate lactonizing enzyme,	82.88
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	82.74
3bjs_A	428	Mandelate racemase/muconate lactonizing enzyme; en	82.65
1chr_A	370	Chloromuconate cycloisomerase; 3.00A {Ralstonia eu	82.62
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	82.34
2zc8_A	369	N-acylamino acid racemase; octamer, TIM beta/alpha	82.33
2o56_A	407	Putative mandelate racemase; dehydratase, structur	82.28
3mwc_A	400	Mandelate racemase/muconate lactonizing protein; e	82.28
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	82.19
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	82.18
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	82.16
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	82.07
3mkc_A	394	Racemase; metabolic process, PSI2, NYSGXRC, struct	81.87
3sbf_A	401	Mandelate racemase / muconate lactonizing enzyme;	81.8
3eez_A	378	Putative mandelate racemase/muconate lactonizing e	81.78
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	81.65
3gd6_A	391	Muconate cycloisomerase; structural genomics, NYSG	81.52
2gdq_A	382	YITF; mandelate racemase/muconate lactonizing enzy	81.28
3ro6_B	356	Putative chloromuconate cycloisomerase; TIM barrel	81.2
3p3b_A	392	Mandelate racemase/muconate lactonizing protein; e	80.81
3rcy_A	433	Mandelate racemase/muconate lactonizing enzyme-LI	80.67
4e4u_A	412	Mandalate racemase/muconate lactonizing enzyme; ma	80.57
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	80.5
1k77_A	260	EC1530, hypothetical protein YGBM; TIM barrel, str	80.44
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	80.41
3ugv_A	390	Enolase; enzyme function initiative, EFI, lyase; 2	80.24
3dgb_A	382	Muconate cycloisomerase; muconate lactonizing enzy	80.22
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	80.08

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=100.00  E-value=6.3e-66  Score=487.09  Aligned_cols=199  Identities=33%  Similarity=0.470  Sum_probs=176.5

Q ss_pred             cccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHH
Q 018446          123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEI  202 (355)
Q Consensus       123 p~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~i  202 (355)
                      .+.+|++|++.+.++....            .....|.++|.+++..... +++++|||||||+|||+|.|+  +||.++
T Consensus         5 l~g~L~div~~~~~~~~~~------------~~~~~p~~~~~~~l~~~~~-~~~~~iIAEiKraSPSkg~i~--~dp~~i   69 (258)
T 4a29_A            5 LKGWLEDVVQLSLRRPSVR------------ASRQRPIISLNERILEFNK-RNITAIIAVYERKSPSGLDVE--RDPIEY   69 (258)
T ss_dssp             CCHHHHHHHHHHHTCCCCC------------CCCSSCCCCHHHHHHHHHH-TTCCCEEEEECSBCTTSCBCC--CCHHHH
T ss_pred             HHHHHHHHHHHHHhChHHH------------HhhcCCccCHHHHHHHHhh-CCCcEEEEEEecCCCCCCCcc--CCHHHH
Confidence            3578999987665432111            0122467899999876543 467899999999999999994  689999


Q ss_pred             HHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHH
Q 018446          203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTK  282 (355)
Q Consensus       203 A~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~  282 (355)
                      |+.|+ +||+|||||||++||+||++||..||++ +++||||||||||||||||||.+||||||||+++|++++|++|++
T Consensus        70 A~~~~-~GA~aiSVLTd~~~F~Gs~~~L~~vr~~-v~lPvLrKDFiid~yQI~eAr~~GADaILLI~a~L~~~~l~~l~~  147 (258)
T 4a29_A           70 AKFME-RYAVGLSITTEEKYFNGSYETLRKIASS-VSIPILMSDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLE  147 (258)
T ss_dssp             HHHHT-TTCSEEEEECCSTTTCCCHHHHHHHHTT-CSSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHH
T ss_pred             HHHHh-CCCeEEEEeCCCCCCCCCHHHHHHHHHh-cCCCEeeccccccHHHHHHHHHcCCCeeehHHhhcCHHHHHHHHH
Confidence            98665 7999999999999999999999999986 999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccc
Q 018446          283 ICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERG  339 (355)
Q Consensus       283 ~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~  339 (355)
                      +|++|||++||||||++|+++|+.+ |+++||||||||+||+||+++|.+|++.+|.
T Consensus       148 ~A~~lGl~~LvEVh~~~El~rAl~~-~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~  203 (258)
T 4a29_A          148 YARSYGMEPLILINDENDLDIALRI-GARFIGIMSRDFETGEINKENQRKLISMIPS  203 (258)
T ss_dssp             HHHHTTCCCEEEESSHHHHHHHHHT-TCSEEEECSBCTTTCCBCHHHHHHHHTTSCT
T ss_pred             HHHHHhHHHHHhcchHHHHHHHhcC-CCcEEEEeCCCccccccCHHHHHHHHhhCCC
Confidence            9999999999999999999999997 9999999999999999999999999876553

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=100.00  E-value=1.5e-64  Score=480.21  Aligned_cols=215  Identities=43%  Similarity=0.654  Sum_probs=202.8

Q ss_pred             CCcccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHH
Q 018446          121 NTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPV  200 (355)
Q Consensus       121 ~~p~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~  200 (355)
                      +-+++||++|+++|++||+++|+..|+.+|++.+...+++++|.++|++... .++++|||||||+|||||+|+++|||+
T Consensus         4 ~m~~~iL~~I~~~k~~ev~~~~~~~~~~~l~~~~~~~~~~~~f~~al~~~~~-~~~~~vIaE~KraSPSkG~i~~~~dp~   82 (272)
T 3tsm_A            4 SMSTDILRKIEAYKREEIAAAKARLALDELKARTRDQSAPRGFLKALEAKRA-AGQFALIAEIKKASPSKGLIRPDFDPP   82 (272)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCHHHHHHHHHH-TTCCEEEEEECSEETTTEESCSSCCHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHhhccc-cCCceEEEEeccCCCCCCccCCCCCHH
Confidence            3346899999999999999999999999999999988999999999986422 367899999999999999999999999


Q ss_pred             HHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHH
Q 018446          201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYM  280 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L  280 (355)
                      ++|+.|+++||+|||||||+.||+||++||..||++ +++||||||||+|+|||++|+.+|||+||||++.|++++|++|
T Consensus        83 ~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~-v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l  161 (272)
T 3tsm_A           83 ALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA-CSLPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKEL  161 (272)
T ss_dssp             HHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHT-SSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTSCHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHh-cCCCEEECCccCCHHHHHHHHHcCCCEEEEcccccCHHHHHHH
Confidence            999999999999999999999999999999999996 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcccc
Q 018446          281 TKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGER  338 (355)
Q Consensus       281 ~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~  338 (355)
                      +++|+++||++||||||.+|+++|+.+ |+++||||||||+||++|+++|.+|++.++
T Consensus       162 ~~~a~~lGl~~lvevh~~eEl~~A~~~-ga~iIGinnr~l~t~~~dl~~~~~L~~~ip  218 (272)
T 3tsm_A          162 EDTAFALGMDALIEVHDEAEMERALKL-SSRLLGVNNRNLRSFEVNLAVSERLAKMAP  218 (272)
T ss_dssp             HHHHHHTTCEEEEEECSHHHHHHHTTS-CCSEEEEECBCTTTCCBCTHHHHHHHHHSC
T ss_pred             HHHHHHcCCeEEEEeCCHHHHHHHHhc-CCCEEEECCCCCccCCCChHHHHHHHHhCC
Confidence            999999999999999999999999997 999999999999999999999999987654

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=100.00  E-value=1.7e-62  Score=494.03  Aligned_cols=206  Identities=42%  Similarity=0.683  Sum_probs=196.2

Q ss_pred             ccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHH
Q 018446          124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA  203 (355)
Q Consensus       124 ~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA  203 (355)
                      .+||++|+++|++||+++++..|+.+|++.+.  +++++|.++|++.     +++|||||||+|||||.|+++|||.++|
T Consensus         2 ~~iL~~I~~~k~~ev~~~~~~~~~~~l~~~~~--~~~r~f~~al~~~-----~~~vIaEvKraSPSkG~i~~~~~~~~iA   74 (452)
T 1pii_A            2 QTVLAKIVADKAIWVEARKQQQPLASFQNEVQ--PSTRHFYDALQGA-----RTAFILECKKASPSKGVIRDDFDPARIA   74 (452)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSCGGGTGGGCC--CCCSCHHHHHCSS-----SCEEEEEECSEETTTEESCSSCCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcCCHHHHHhhcc--cCCCCHHHHHhcC-----CCceEEEecCCCCCCCccCCCCCHHHHH
Confidence            47999999999999999999999999987653  6789999999742     4799999999999999999999999999


Q ss_pred             HHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHH
Q 018446          204 RSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKI  283 (355)
Q Consensus       204 ~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~  283 (355)
                      ++|+++ |+|||||||++||+||++||..||++ +++||||||||+|+|||+|||.+|||+||||+++|++++|++|+++
T Consensus        75 ~~y~~~-A~~IsvLTd~~~F~gs~~dL~~vr~~-v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a~l~~~~l~~l~~~  152 (452)
T 1pii_A           75 AIYKHY-ASAISVLTDEKYFQGSFNFLPIVSQI-APQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAV  152 (452)
T ss_dssp             HHHTTT-CSEEEEECCSTTTCCCTTHHHHHHHH-CCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHH
T ss_pred             HHHHhh-CcEEEEEecccccCCCHHHHHHHHHh-cCCCeEEEeccCCHHHHHHHHHcCCCEEEEEcccCCHHHHHHHHHH
Confidence            999998 99999999999999999999999997 9999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccc
Q 018446          284 CKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERG  339 (355)
Q Consensus       284 A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~  339 (355)
                      |++|||++||||||++|+++|+.+ |+++||||||||+||++|+++|.+|++.++.
T Consensus       153 a~~lgm~~LvEvh~~eE~~~A~~l-ga~iIGinnr~L~t~~~dl~~~~~L~~~ip~  207 (452)
T 1pii_A          153 AHSLEMGVLTEVSNEEEQERAIAL-GAKVVGINNRDLRDLSIDLNRTRELAPKLGH  207 (452)
T ss_dssp             HHHTTCEEEEEECSHHHHHHHHHT-TCSEEEEESEETTTTEECTHHHHHHHHHHCT
T ss_pred             HHHcCCeEEEEeCCHHHHHHHHHC-CCCEEEEeCCCCCCCCCCHHHHHHHHHhCCC
Confidence            999999999999999999999998 9999999999999999999999999876543

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=100.00  E-value=5.1e-62  Score=458.24  Aligned_cols=201  Identities=33%  Similarity=0.489  Sum_probs=190.4

Q ss_pred             cHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHH
Q 018446          125 NILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIAR  204 (355)
Q Consensus       125 ~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~  204 (355)
                      |||++|+++|+.||+++++..|+.      .  +++++|.++|++.    ++++|||||||+|||+|.|+++|||.++|+
T Consensus         1 ~iL~~I~~~k~~ev~~~~~~~~~~------~--~~~~~f~~al~~~----~~~~vIaE~K~aSPSkG~i~~~~~~~~iA~   68 (251)
T 1i4n_A            1 RRLWEIVEAKKKDILEIDGENLIV------Q--RRNHRFLEVLSGK----ERVKIIAEFKKASPSAGDINADASLEDFIR   68 (251)
T ss_dssp             CCHHHHHHHHHHHGGGCCGGGCCC------C--CCCCHHHHHHCCS----SSCEEEEEECSBCSSSCBSCTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhhCCCc------C--CCCcCHHHHHhhC----CCceEEEeecCCCCCCCccCCCCCHHHHHH
Confidence            689999999999999999999987      1  6789999999743    458999999999999999999999999999


Q ss_pred             HHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHH
Q 018446          205 SYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKIC  284 (355)
Q Consensus       205 ~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A  284 (355)
                      +|+++ |+|||||||++||+||++||..||++ +++||||||||+|+|||++|+.+|||+||||+++|++++|++|+++|
T Consensus        69 ~y~~~-A~~IsVlTd~~~F~gs~~dL~~ir~~-v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a  146 (251)
T 1i4n_A           69 MYDEL-ADAISILTEKHYFKGDPAFVRAARNL-TCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAA  146 (251)
T ss_dssp             HHHHH-CSEEEEECCCSSSCCCTHHHHHHHTT-CCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHH
T ss_pred             HHHHh-CCceEEEecccccCCCHHHHHHHHHh-CCCCEEEeeCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHH
Confidence            99999 99999999999999999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             HHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccc
Q 018446          285 KLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERG  339 (355)
Q Consensus       285 ~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~  339 (355)
                      +++||++||||||.+|+++|+.+.|+++||||||||+||++|+++|.+|++.++.
T Consensus       147 ~~lGl~~lvEv~~~eE~~~A~~l~g~~iIGinnr~l~t~~~d~~~~~~l~~~ip~  201 (251)
T 1i4n_A          147 EELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVPD  201 (251)
T ss_dssp             HTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSCT
T ss_pred             HHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCcccccCCCCHHHHHHHHHhCCC
Confidence            9999999999999999999999538999999999999999999999999887654

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=100.00  E-value=5.9e-60  Score=447.06  Aligned_cols=208  Identities=40%  Similarity=0.615  Sum_probs=187.4

Q ss_pred             cccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHH
Q 018446          123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEI  202 (355)
Q Consensus       123 p~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~i  202 (355)
                      |||||++|+++|++||+++|+..|+.+|++.+...|++++|.++|++.     .++|||||||+|||+|+|+++|||.++
T Consensus         3 ~~~il~~i~~~k~~~v~~~~~~~~~~~l~~~~~~~~~~~~f~~al~~~-----~~~~IaE~K~asPs~g~i~~~~~p~~~   77 (272)
T 3qja_A            3 PATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVMAALREP-----GIGVIAEVKRASPSAGALATIADPAKL   77 (272)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCCCCCHHHHHTSS-----SCEEEEEEC-------------CHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhhCCCCCCHHHHHhcC-----CCeEEEEEecCCCCCCccCCCCCHHHH
Confidence            689999999999999999999999999999998889999999999742     379999999999999999999999999


Q ss_pred             HHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHH
Q 018446          203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTK  282 (355)
Q Consensus       203 A~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~  282 (355)
                      |+.|+++||+|||||||+.||+||++||..+|++ +++||||||||+|+|||++|+.+|||+|+||.+.|+++++.+|++
T Consensus        78 A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~-v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~  156 (272)
T 3qja_A           78 AQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRAS-VSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLD  156 (272)
T ss_dssp             HHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHh-CCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHH
Confidence            9999999999999999999999999999999996 999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccc
Q 018446          283 ICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGE  337 (355)
Q Consensus       283 ~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~  337 (355)
                      .|+++||++||||||.+|+++|+.+ |+++|||||||++||++|++++.+|.+..
T Consensus       157 ~a~~lGl~~lvev~t~ee~~~A~~~-Gad~IGv~~r~l~~~~~dl~~~~~l~~~v  210 (272)
T 3qja_A          157 RTESLGMTALVEVHTEQEADRALKA-GAKVIGVNARDLMTLDVDRDCFARIAPGL  210 (272)
T ss_dssp             HHHHTTCEEEEEESSHHHHHHHHHH-TCSEEEEESBCTTTCCBCTTHHHHHGGGS
T ss_pred             HHHHCCCcEEEEcCCHHHHHHHHHC-CCCEEEECCCcccccccCHHHHHHHHHhC
Confidence            9999999999999999999999997 99999999999999999999999998754

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=100.00  E-value=3.1e-54  Score=403.41  Aligned_cols=198  Identities=40%  Similarity=0.573  Sum_probs=185.7

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCH
Q 018446          120 GNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDP  199 (355)
Q Consensus       120 ~~~p~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp  199 (355)
                      .+.+.+||++|+++|++||+++++          . ..|++++|.++|+..     .++|||||||+|||||+|++ +||
T Consensus         5 ~~~~~~~l~~i~~~k~~~v~~~~~----------~-~~~~~~~~~~al~~~-----~~~~IaE~k~aSPskg~i~~-~~p   67 (254)
T 1vc4_A            5 LSRVPGVLGEIARKRASEVAPYPL----------P-EPPSVPSFKEALLRP-----GLSVIAEVKRQSPSEGLIRE-VDP   67 (254)
T ss_dssp             CTTCCHHHHHHHHHHHHTCCCCCC----------C-CCCCCCCHHHHHTSS-----SCEEEEEECSCCTTTCCCCS-CCH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHh----------c-cCCCccCHHHHHhhc-----CCcEEeeecCCCcCCCcCCC-CCH
Confidence            345568999999999999987766          1 447789999999742     37999999999999999999 999


Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHH
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRY  279 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~  279 (355)
                      .++|+.|+++||+|||||||+.||+|+++||..+|++ +++||||||||+|+|||++|+.+|||+|+|+++.|+ +++++
T Consensus        68 ~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~-v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~-~~l~~  145 (254)
T 1vc4_A           68 VEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREA-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLG-ELTGA  145 (254)
T ss_dssp             HHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHH-CCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG-GGHHH
T ss_pred             HHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHh-cCCCEEECCcCCCHHHHHHHHHcCCCEEEECccchH-HHHHH
Confidence            9999999999999999999999999999999999996 999999999999999999999999999999999999 89999


Q ss_pred             HHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccc
Q 018446          280 MTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGE  337 (355)
Q Consensus       280 L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~  337 (355)
                      |++.|+++||+++|||||++|+++|+.+ |+++|||||||++||.+|++++.+|.+..
T Consensus       146 l~~~a~~lGl~~lvev~~~~E~~~a~~~-gad~IGvn~~~l~~~~~dl~~~~~L~~~i  202 (254)
T 1vc4_A          146 YLEEARRLGLEALVEVHTERELEIALEA-GAEVLGINNRDLATLHINLETAPRLGRLA  202 (254)
T ss_dssp             HHHHHHHHTCEEEEEECSHHHHHHHHHH-TCSEEEEESBCTTTCCBCTTHHHHHHHHH
T ss_pred             HHHHHHHCCCeEEEEECCHHHHHHHHHc-CCCEEEEccccCcCCCCCHHHHHHHHHhC
Confidence            9999999999999999999999999998 99999999999999999999999998754

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=2e-26  Score=224.23  Aligned_cols=131  Identities=24%  Similarity=0.205  Sum_probs=111.2

Q ss_pred             CCCHHHHHHHHHHcCceEEEEe----ccCCCCCC-----CHHHHHHHHhcCCCCCeeccccc--cCHHHHHHHHHcCCcc
Q 018446          196 DFDPVEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFI--VDAWQIYYARTKGADA  264 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVL----TD~~fF~G-----S~edL~~VR~a~v~lPVLrKDFI--IdpyQI~eAr~~GADA  264 (355)
                      ++++.++|+.|+++||+|||+|    ||.+||+|     +++++..++++ |++||++||||  +++|||+||  +|||+
T Consensus        23 d~~~~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~arm~~p~~i~~I~~a-v~iPV~~K~rig~~~e~qilea--~GaD~   99 (330)
T 2yzr_A           23 DVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDA-VSIPVMAKCRIGHTTEALVLEA--IGVDM   99 (330)
T ss_dssp             EESSHHHHHHHHHHTCSEEEECSSCHHHHC--CCCCCCCCHHHHHHHHHH-CSSCEEEEEETTCHHHHHHHHH--TTCSE
T ss_pred             eCCHHHHHHHHHHcCCCEEEecCCccccccCCcchhhcCCHHHHHHHHHh-cCCCeEEEEeecchHHHHHHHH--cCCCE
Confidence            5577899999999999999999    89999999     99999999997 99999999999  999999999  99999


Q ss_pred             hHHHHhcCCHHHH--------------------HHHHHHHH----------HcCCcEEEEe--C--------------CH
Q 018446          265 VLLIAAVLPDLDI--------------------RYMTKICK----------LLGLTALVEV--H--------------DE  298 (355)
Q Consensus       265 VLLIaaiL~~~~L--------------------~~L~~~A~----------~LGLeaLVEV--H--------------~~  298 (355)
                      |+ +..+|++.++                    .+.++.+.          +-||+.|||+  |              |.
T Consensus       100 Id-~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~~~s~~~~  178 (330)
T 2yzr_A          100 ID-ESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTD  178 (330)
T ss_dssp             EE-EETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHTTSCH
T ss_pred             Ee-hhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHHhcCcceeeccCCCCcccchhHHHHHHHHHHHHHHhccCCH
Confidence            96 9889887654                    22222221          1349999999  7              99


Q ss_pred             HHHHH-HhccCCCeE----------EEeeCCCCCccccChhhHH
Q 018446          299 REMDR-VLGIEGIEL----------IGINNRNLETFEVDNSNTK  331 (355)
Q Consensus       299 eELer-Al~l~ga~i----------IGINNRdL~TfevDl~~t~  331 (355)
                      +|+.+ |... |+++          +|+|||||.+|.+++..|.
T Consensus       179 ~El~~~A~~~-gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK  221 (330)
T 2yzr_A          179 EEVYGVAKFY-ANRYAELAKTVREGMGLPATVLENEPIYEGFTL  221 (330)
T ss_dssp             HHHHHHHHHH-HGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEH
T ss_pred             HHHHHHHHHc-CCCEeecccchhhhccccccccccccccCCCcc
Confidence            99977 7776 8999          9999999999999994444

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=99.88  E-value=1.2e-22  Score=187.26  Aligned_cols=146  Identities=21%  Similarity=0.277  Sum_probs=127.4

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---ccc-----ccc
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKE-----FIV  249 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rKD-----FII  249 (355)
                      ++|+.|  ..+..+.++..+++.++|++|+++||.|||+        |++++++.+|+. +++|||   +||     |+|
T Consensus        19 ~livsc--q~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~--------~~~~~i~~ir~~-v~~Pvig~~k~~~~~~~~~I   87 (229)
T 3q58_A           19 GLIVSC--QPVPGSPMDKPEIVAAMAQAAASAGAVAVRI--------EGIENLRTVRPH-LSVPIIGIIKRDLTGSPVRI   87 (229)
T ss_dssp             CEEEEC--CCCTTSTTCSHHHHHHHHHHHHHTTCSEEEE--------ESHHHHHHHGGG-CCSCEEEECBCCCSSCCCCB
T ss_pred             CEEEEE--eCCCCCCCCCcchHHHHHHHHHHCCCcEEEE--------CCHHHHHHHHHh-cCCCEEEEEeecCCCCceEe
Confidence            366665  3355556788889999999999999999998        789999999996 999998   777     889


Q ss_pred             CHH--HHHHHHHcCCcchHHHHhcC-CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC----c
Q 018446          250 DAW--QIYYARTKGADAVLLIAAVL-PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLE----T  322 (355)
Q Consensus       250 dpy--QI~eAr~~GADAVLLIaaiL-~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~----T  322 (355)
                      +||  |+++++.+|||.|+|+++.+ .++.+.++++.++++|+.++++|||.+|++++.++ |+++||+|++++.    +
T Consensus        88 ~~~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~-Gad~Ig~~~~g~t~~~~~  166 (229)
T 3q58_A           88 TPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK-GIEFIGTTLSGYTGPITP  166 (229)
T ss_dssp             SCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT-TCSEEECTTTTSSSSCCC
T ss_pred             CccHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC-CCCEEEecCccCCCCCcC
Confidence            987  89999999999999999874 67789999999999999999999999999999997 9999999999885    4


Q ss_pred             cccChhhHHhhhc
Q 018446          323 FEVDNSNTKKLLE  335 (355)
Q Consensus       323 fevDl~~t~~L~~  335 (355)
                      +..|++...++.+
T Consensus       167 ~~~~~~li~~l~~  179 (229)
T 3q58_A          167 VEPDLAMVTQLSH  179 (229)
T ss_dssp             SSCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHHH
Confidence            5677777777754

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=99.87  E-value=7.7e-24  Score=203.23  Aligned_cols=120  Identities=21%  Similarity=0.187  Sum_probs=98.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHcCceEEEEe----ccCCCCCC-----CHHHHHHHHhcCCCCCeecc---ccccCHHHHHHH
Q 018446          190 RGILREDFDPVEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCK---EFIVDAWQIYYA  257 (355)
Q Consensus       190 kG~I~~~~Dp~~iA~~Ye~~GAaaISVL----TD~~fF~G-----S~edL~~VR~a~v~lPVLrK---DFIIdpyQI~eA  257 (355)
                      ||-+..+|+|.++|+.|+++||+|||||    ||..||+|     ++++|+.||++ +++|||+|   || +++||+++ 
T Consensus        21 kggv~~d~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~-v~iPvl~k~~i~~-ide~qil~-   97 (297)
T 4adt_A           21 KGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKC-ISINVLAKVRIGH-FVEAQILE-   97 (297)
T ss_dssp             TTCEEEEESSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTT-CCSEEEEEEETTC-HHHHHHHH-
T ss_pred             cCCcccCCCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHh-cCCCEEEeccCCc-HHHHHHHH-
Confidence            4444456688899999999999999999    79999999     99999999996 99999988   55 89999998 


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHH--cCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKL--LGLTALVEVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~--LGLeaLVEVH~~eELerAl~l~ga~iIGINNR  318 (355)
                       .+|||+| .....++   +.++++.+++  +|+..++||||.+|+.+++.+ |+++||+|||
T Consensus        98 -aaGAD~I-d~s~~~~---~~~li~~i~~~~~g~~vvv~v~~~~Ea~~a~~~-Gad~I~v~g~  154 (297)
T 4adt_A           98 -ELKVDML-DESEVLT---MADEYNHINKHKFKTPFVCGCTNLGEALRRISE-GASMIRTKGE  154 (297)
T ss_dssp             -HTTCSEE-EEETTSC---CSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHH-TCSEEEECCC
T ss_pred             -HcCCCEE-EcCCCCC---HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhC-CCCEEEECCC
Confidence             5999999 4444444   3456777777  799999999999999999997 9999999988

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=99.87  E-value=3.4e-22  Score=184.45  Aligned_cols=145  Identities=17%  Similarity=0.204  Sum_probs=126.7

Q ss_pred             EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---ccc-----cccC
Q 018446          179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKE-----FIVD  250 (355)
Q Consensus       179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rKD-----FIId  250 (355)
                      +|+.|  ..+..+.++..+++.++|++|+++||.|||+        |++++++.+|+. +++|||   +||     |+|+
T Consensus        20 livsc--q~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~--------~~~~~i~~ir~~-v~~Pvig~~k~d~~~~~~~I~   88 (232)
T 3igs_A           20 LIVSC--QPVPGSPLDKPEIVAAMALAAEQAGAVAVRI--------EGIDNLRMTRSL-VSVPIIGIIKRDLDESPVRIT   88 (232)
T ss_dssp             EEEEC--CCCTTCTTCSHHHHHHHHHHHHHTTCSEEEE--------ESHHHHHHHHTT-CCSCEEEECBCCCSSCCCCBS
T ss_pred             EEEEE--eCCCCCCCCCcchHHHHHHHHHHCCCeEEEE--------CCHHHHHHHHHh-cCCCEEEEEeecCCCcceEeC
Confidence            56655  3345566788899999999999999999998        789999999996 999998   776     7899


Q ss_pred             HH--HHHHHHHcCCcchHHHHhcC-CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCc----c
Q 018446          251 AW--QIYYARTKGADAVLLIAAVL-PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLET----F  323 (355)
Q Consensus       251 py--QI~eAr~~GADAVLLIaaiL-~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~T----f  323 (355)
                      +|  |+++++.+|||.|+|+++.+ .++.+.++++.++++|+.++++|||.+|++++.++ |+++||+|++++.+    +
T Consensus        89 ~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~-Gad~Ig~~~~g~t~~~~~~  167 (232)
T 3igs_A           89 PFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL-GADIIGTTMSGYTTPDTPE  167 (232)
T ss_dssp             CSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT-TCSEEECTTTTSSSSSCCS
T ss_pred             ccHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC-CCCEEEEcCccCCCCCCCC
Confidence            87  99999999999999999874 56789999999999999999999999999999997 99999999998854    5


Q ss_pred             ccChhhHHhhhc
Q 018446          324 EVDNSNTKKLLE  335 (355)
Q Consensus       324 evDl~~t~~L~~  335 (355)
                      ..|++...++.+
T Consensus       168 ~~~~~~i~~l~~  179 (232)
T 3igs_A          168 EPDLPLVKALHD  179 (232)
T ss_dssp             SCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHh
Confidence            677777777754

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=99.81  E-value=3.4e-20  Score=171.85  Aligned_cols=114  Identities=15%  Similarity=0.202  Sum_probs=107.9

Q ss_pred             CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHH---------HHHHHHcCCcchHHHHhc--CCHHHHHHHHHHHHHcC
Q 018446          220 EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQ---------IYYARTKGADAVLLIAAV--LPDLDIRYMTKICKLLG  288 (355)
Q Consensus       220 ~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQ---------I~eAr~~GADAVLLIaai--L~~~~L~~L~~~A~~LG  288 (355)
                      +.||.|++.+|..+|+. +++||++||  +|+||         +++++.+|||+|||+.+.  +...++..+++.|.++|
T Consensus        41 ~~~~~~~~~~L~~v~~~-~~i~v~aQd--v~~~~~Ga~TGeis~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~G  117 (225)
T 1hg3_A           41 TIVVAPQLVDLRMIAES-VEIPVFAQH--IDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVG  117 (225)
T ss_dssp             EEEEECCHHHHHHHHHS-CSSCBEESC--CCSCCSBSCTTCCCHHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHT
T ss_pred             cEEEeCCHHHHHHHHHh-cCCceeeee--CCcccCCCccCcccHHHHHHcCCCEEEECcchhcCCHHHHHHHHHHHHHCC
Confidence            46999999999999996 799999999  99999         999999999999999999  99999999999999999


Q ss_pred             CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC-------ccccC-hhhHHhhhccc
Q 018446          289 LTALVEVHDEREMDRVLGIEGIELIGINNRNLE-------TFEVD-NSNTKKLLEGE  337 (355)
Q Consensus       289 LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~-------TfevD-l~~t~~L~~~~  337 (355)
                      |++|||||+.+|++++..+ ++.+||+|||++.       ||++| ++++.++++..
T Consensus       118 L~~ivcVge~~e~~~~~~~-~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~  173 (225)
T 1hg3_A          118 LMTMVCSNNPAVSAAVAAL-NPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKV  173 (225)
T ss_dssp             CEEEEEESSHHHHHHHHTT-CCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHhcC-CCCEEEEeChhhhccCCCCCCCChhHHHHHHHHHHhc
Confidence            9999999999999999887 7899999999997       99999 99999998754

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=99.79  E-value=3e-20  Score=172.40  Aligned_cols=114  Identities=18%  Similarity=0.217  Sum_probs=107.8

Q ss_pred             CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHH---------HHHHHHcCCcchHHHHhc--CCHHHHHHHHHHHHHcC
Q 018446          220 EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQ---------IYYARTKGADAVLLIAAV--LPDLDIRYMTKICKLLG  288 (355)
Q Consensus       220 ~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQ---------I~eAr~~GADAVLLIaai--L~~~~L~~L~~~A~~LG  288 (355)
                      +.||.|++.+|..+|+. +++||++||  +|+||         +++++.+|||+|||+.+.  +...++..+++.|.++|
T Consensus        38 ~~~~~p~~~~L~~v~~~-~~i~v~aQd--v~~~~~Ga~TGeis~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~G  114 (226)
T 1w0m_A           38 NIVVAPNHLELGLVSQS-VDIPVYAQG--ADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLG  114 (226)
T ss_dssp             EEEEECCGGGHHHHHTT-CSSCBEESC--CSBSSCSSCTTCCBHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTT
T ss_pred             cEEEeCCHHHHHHHHHh-cCCceEeeE--CChhhCCCccCCCCHHHHHHcCCCEEEEeeeeccCCHHHHHHHHHHHHHCC
Confidence            46999999999999986 799999999  99999         999999999999999999  99999999999999999


Q ss_pred             CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC-------ccccC-hhhHHhhhccc
Q 018446          289 LTALVEVHDEREMDRVLGIEGIELIGINNRNLE-------TFEVD-NSNTKKLLEGE  337 (355)
Q Consensus       289 LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~-------TfevD-l~~t~~L~~~~  337 (355)
                      |++|||||+..|++++..+ ++.+||+|||++.       ||++| ++++.++++.+
T Consensus       115 L~~ivcVge~~e~~~~~~~-~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~  170 (226)
T 1w0m_A          115 LDVVVCAPDPRTSLAAAAL-GPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRH  170 (226)
T ss_dssp             CEEEEEESSHHHHHHHHHT-CCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHhcC-CCCEEEEcChhhhccCCCCCCCChhHHHHHHHHHHhc
Confidence            9999999999999999887 7899999999998       99999 99999998754

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=99.66  E-value=4.1e-17  Score=148.80  Aligned_cols=113  Identities=17%  Similarity=0.236  Sum_probs=98.6

Q ss_pred             CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHH---------HHHHHHcCCcchHHHHh--cCCHHHHHHHHHHHHHcC
Q 018446          220 EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQ---------IYYARTKGADAVLLIAA--VLPDLDIRYMTKICKLLG  288 (355)
Q Consensus       220 ~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQ---------I~eAr~~GADAVLLIaa--iL~~~~L~~L~~~A~~LG  288 (355)
                      +.||.|++.+|..+|+. +++||++||  +|+||         +.+++.+|||+|+|+.+  .|+.+++.++++.|+++|
T Consensus        35 ~~~~~~~~~~l~~v~~~-~~~~v~aqd--~~~~~~ga~tGei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~G  111 (219)
T 2h6r_A           35 TIGVAPQFVDLRMIVEN-VNIPVYAQH--IDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLG  111 (219)
T ss_dssp             CEEEECCTTTHHHHHHH-CCSCBEESC--CCSCCSBSCTTCCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHT
T ss_pred             cEEEECCHHHHHHHHHH-cCCcEEEEE--CChhhcCCccCchHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCC
Confidence            56999999999999996 799999999  78999         99999999999999987  798889999999999999


Q ss_pred             CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCC-------CccccC-hhhHHhhhcc
Q 018446          289 LTALVEVHDEREMDRVLGIEGIELIGINNRNL-------ETFEVD-NSNTKKLLEG  336 (355)
Q Consensus       289 LeaLVEVH~~eELerAl~l~ga~iIGINNRdL-------~TfevD-l~~t~~L~~~  336 (355)
                      |+++++||+.+|.+++..+ ++.+||+|+|++       +||+.| ++.+.++++.
T Consensus       112 l~~iv~v~~~~e~~~~~~~-~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~  166 (219)
T 2h6r_A          112 LETIVCTNNINTSKAVAAL-SPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKE  166 (219)
T ss_dssp             CEEEEEESSSHHHHHHTTT-CCSEEEECCCC--------------CSHHHHHHHHH
T ss_pred             CeEEEEeCCchHHHHHHhC-CCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHh
Confidence            9999999999999999887 889999999999       899998 8888777764

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=99.50  E-value=4.2e-15  Score=140.65  Aligned_cols=117  Identities=22%  Similarity=0.242  Sum_probs=99.8

Q ss_pred             CCCCCCCHHHHHHHHHHcCceEEEEec----cCCCCCC-----CHHHHHHHHhcCCCCCeeccccc--cCHHHHHHHHHc
Q 018446          192 ILREDFDPVEIARSYEKGGAACLSILT----DEKYFKG-----SFENLEAVRSAGVKCPLLCKEFI--VDAWQIYYARTK  260 (355)
Q Consensus       192 ~I~~~~Dp~~iA~~Ye~~GAaaISVLT----D~~fF~G-----S~edL~~VR~a~v~lPVLrKDFI--IdpyQI~eAr~~  260 (355)
                      +|. +.||.++|+.|+++||++|++|+    +.++|+|     +++.+..+++. +++||++||++  ++.+|++++  +
T Consensus        24 ~i~-~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~-~~iPv~~k~r~g~~~~~~~~~a--~   99 (305)
T 2nv1_A           24 VIM-DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNA-VSIPVMAKARIGHIVEARVLEA--M   99 (305)
T ss_dssp             EEE-EESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHH-CSSCEEEEECTTCHHHHHHHHH--H
T ss_pred             eee-cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHh-CCCCEEecccccchHHHHHHHH--C
Confidence            443 45888999999999999999997    7889999     89999999986 89999999999  888888776  9


Q ss_pred             CCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          261 GADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       261 GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      |||+|+ +...+++.++.++++ ++.+|+..++.+||.+|+.++++. |+++|++
T Consensus       100 GAd~V~-~~~~l~~~~~~~~i~-~~~~g~~v~~~~~~~~e~~~a~~~-Gad~V~~  151 (305)
T 2nv1_A          100 GVDYID-ESEVLTPADEEFHLN-KNEYTVPFVCGCRDLGEATRRIAE-GASMLRT  151 (305)
T ss_dssp             TCSEEE-ECTTSCCSCSSCCCC-GGGCSSCEEEEESSHHHHHHHHHT-TCSEEEE
T ss_pred             CCCEEE-EeccCCHHHHHHHHH-HhccCCcEEEEeCCHHHHHHHHHC-CCCEEEe
Confidence            999997 777778777777777 889999999999999999999985 9998877

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=99.41  E-value=7e-15  Score=140.87  Aligned_cols=111  Identities=22%  Similarity=0.167  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHcCceEEEEe----ccCCCCCC-----CHHHHHHHHhcCCCCCeeccccccC--HHHHHHHHHcCCcchHH
Q 018446          199 PVEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVD--AWQIYYARTKGADAVLL  267 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVL----TD~~fF~G-----S~edL~~VR~a~v~lPVLrKDFIId--pyQI~eAr~~GADAVLL  267 (355)
                      ..++|+.|+++||.|+++|    ||.++|+|     ++++++.|+++ |++||+.|++|-|  +.|+.++  +|||.| -
T Consensus        20 ~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~a-VsIPVm~k~righ~~EAqilea--~GaD~I-D   95 (291)
T 3o07_A           20 TPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNS-VSIPVMAKVRIGHFVEAQIIEA--LEVDYI-D   95 (291)
T ss_dssp             SHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTT-CSSCEEEEEETTCHHHHHHHHH--TTCSEE-E
T ss_pred             CHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHh-CCCCeEEEEecCcHHHHHHHHH--cCCCEE-e
Confidence            3479999999999999999    99999999     49999999996 9999999999999  9999999  999988 5


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          268 IAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       268 IaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      -..+|++.++.+.++. +.++.--+.+++|.+|+.|++.. ||++||.
T Consensus        96 esevltpad~~~~I~k-~~f~vpfv~~~~~l~EAlrri~e-GA~mIrT  141 (291)
T 3o07_A           96 ESEVLTPADWTHHIEK-DKFKVPFVCGAKDLGEALRRINE-GAAMIRT  141 (291)
T ss_dssp             EETTSCCSCSSCCCCG-GGCSSCEEEEESSHHHHHHHHHH-TCSEEEE
T ss_pred             cccCCCHHHHHHHhhh-hcCCCcEEeeCCCHHHHHHHHHC-CCCEEEe
Confidence            5677777666554444 45677444599999999999996 9999996

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=99.37  E-value=9.1e-13  Score=120.36  Aligned_cols=144  Identities=18%  Similarity=0.074  Sum_probs=112.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHcCceEEEEeccCCC-CCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcch
Q 018446          190 RGILREDFDPVEIARSYEKGGAACLSILTDEKY-FKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAV  265 (355)
Q Consensus       190 kG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~f-F~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAV  265 (355)
                      .|....+.|+.++|+.|+++||++|.| ||... |.|.   ++.++.+++. +++||+.+++|-+++|+.++...|||+|
T Consensus        23 ~g~~~~~~~~~~~a~~~~~~Ga~~i~v-~d~~~~~~~~g~~~~~i~~i~~~-~~iPvi~~ggi~~~~~i~~~~~~Gad~v  100 (266)
T 2w6r_A           23 SGKKNTGILLRDWVVEVEKRGAGEILL-TSIDRDGTKSGYDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADKA  100 (266)
T ss_dssp             TTTEEEEEEHHHHHHHHHHHTCSEEEE-EETTTSSCSSCCCHHHHHHHGGG-CCSCEEEESCCCSTHHHHHHHHHTCSEE
T ss_pred             CCeeccCCCHHHHHHHHHHCCCCEEEE-EecCcccCCCcccHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCcHh
Confidence            344445568999999999999999999 66553 3444   8999999986 8999999999999999999999999999


Q ss_pred             HHHHhcC----CHHHHHHHHHHHH--H----cCCcE-------EEEeCC--------HHH-HHHHhccCCCeEEEeeC--
Q 018446          266 LLIAAVL----PDLDIRYMTKICK--L----LGLTA-------LVEVHD--------ERE-MDRVLGIEGIELIGINN--  317 (355)
Q Consensus       266 LLIaaiL----~~~~L~~L~~~A~--~----LGLea-------LVEVH~--------~eE-LerAl~l~ga~iIGINN--  317 (355)
                      ++..+.+    +++.++++.+.+.  .    +++++       .|++|+        ..| ++++..+ |+..|.+++  
T Consensus       101 ~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~-G~~~i~~t~~~  179 (266)
T 2w6r_A          101 LAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKR-GAGEILLTSID  179 (266)
T ss_dssp             ECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHT-TCSEEEEEETT
T ss_pred             hhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHc-CCCEEEEEeec
Confidence            9999999    4455555554443  2    56776       688886        345 4777776 999999987  


Q ss_pred             CCCCccccChhhHHhhhcc
Q 018446          318 RNLETFEVDNSNTKKLLEG  336 (355)
Q Consensus       318 RdL~TfevDl~~t~~L~~~  336 (355)
                      ||...+.+|++...+|.+.
T Consensus       180 ~~g~~~g~~~~~i~~l~~~  198 (266)
T 2w6r_A          180 RDGTKSGYDTEMIRFVRPL  198 (266)
T ss_dssp             TTTTCSCCCHHHHHHHGGG
T ss_pred             CCCCcCCCCHHHHHHHHHH
Confidence            6777788999999888765

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=99.33  E-value=2e-12  Score=116.53  Aligned_cols=135  Identities=14%  Similarity=0.132  Sum_probs=108.6

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCH--HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSF--ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL  275 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~--edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~  275 (355)
                      ||.++|+.|+++||++|+|.+...+|.|..  +.++.+++. +++|++.+++|.++.|+.++..+|||+|.+....|.+.
T Consensus        32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~~~i~~i~~~-~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~~p  110 (244)
T 2y88_A           32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGK-LDVQVELSGGIRDDESLAAALATGCARVNVGTAALENP  110 (244)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEEHHHHTTSCCCHHHHHHHHHH-CSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCH
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCcccccCCChHHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhhCh
Confidence            899999999999999999998777787776  788999886 89999999999999999999999999999999887532


Q ss_pred             HHHHHHHHHHH------cCCcEE-------EEeCC--------HHHHHHHhccCCCeEEEeeCCCCCcc--ccChhhHHh
Q 018446          276 DIRYMTKICKL------LGLTAL-------VEVHD--------EREMDRVLGIEGIELIGINNRNLETF--EVDNSNTKK  332 (355)
Q Consensus       276 ~L~~L~~~A~~------LGLeaL-------VEVH~--------~eELerAl~l~ga~iIGINNRdL~Tf--evDl~~t~~  332 (355)
                        ..+.+..+.      +|+++.       |.+|.        .+.++++.+. |++.|.+++|+....  .+|++...+
T Consensus       111 --~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~-G~~~i~~~~~~~~~~~~g~~~~~~~~  187 (244)
T 2y88_A          111 --QWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSE-GCSRFVVTDITKDGTLGGPNLDLLAG  187 (244)
T ss_dssp             --HHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHT-TCCCEEEEETTTTTTTSCCCHHHHHH
T ss_pred             --HHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhC-CCCEEEEEecCCccccCCCCHHHHHH
Confidence              233344444      345655       33333        5666888886 999999999998644  578888888


Q ss_pred             hhcc
Q 018446          333 LLEG  336 (355)
Q Consensus       333 L~~~  336 (355)
                      +.+.
T Consensus       188 l~~~  191 (244)
T 2y88_A          188 VADR  191 (244)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            8764

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=99.25  E-value=3.4e-11  Score=109.00  Aligned_cols=141  Identities=20%  Similarity=0.138  Sum_probs=110.5

Q ss_pred             CCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH---HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446          194 REDFDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       194 ~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~---edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa  270 (355)
                      ....||.++|+.|+++||++|+|..-..+|.|..   +.++.+++. +++||+..++|.++.|+.++..+|||+|.+..+
T Consensus        27 ~~~~d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~-~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~  105 (253)
T 1thf_D           27 RDSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINTA  105 (253)
T ss_dssp             SCTTCHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred             eeccCHHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence            3456999999999999999999996666777654   445667774 799999999999999999999999999999888


Q ss_pred             cCCH-HHHHHHHHHHH----HcCCcE-------EEEeCCH---------HHHHHHhccCCCeEEEee--CCCCCccccCh
Q 018446          271 VLPD-LDIRYMTKICK----LLGLTA-------LVEVHDE---------REMDRVLGIEGIELIGIN--NRNLETFEVDN  327 (355)
Q Consensus       271 iL~~-~~L~~L~~~A~----~LGLea-------LVEVH~~---------eELerAl~l~ga~iIGIN--NRdL~TfevDl  327 (355)
                      .+.+ +.+.++.+...    .+|+++       .|++|..         +.++++.++ |+..|.++  +|+.....+|+
T Consensus       106 ~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~-G~~~i~~~~~~~~g~~~g~~~  184 (253)
T 1thf_D          106 AVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDT  184 (253)
T ss_dssp             HHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHT-TCSEEEEEETTTTTSCSCCCH
T ss_pred             HHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHC-CCCEEEEEeccCCCCCCCCCH
Confidence            8853 33555554432    256776       6787763         446778886 89988887  56777778899


Q ss_pred             hhHHhhhcc
Q 018446          328 SNTKKLLEG  336 (355)
Q Consensus       328 ~~t~~L~~~  336 (355)
                      +...++.+.
T Consensus       185 ~~~~~l~~~  193 (253)
T 1thf_D          185 EMIRFVRPL  193 (253)
T ss_dssp             HHHHHHGGG
T ss_pred             HHHHHHHHh
Confidence            999888764

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=99.23  E-value=5.2e-11  Score=107.22  Aligned_cols=128  Identities=13%  Similarity=0.148  Sum_probs=107.6

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---cccc-----ccC--HHHHHHHHHcCCcchHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKEF-----IVD--AWQIYYARTKGADAVLL  267 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rKDF-----IId--pyQI~eAr~~GADAVLL  267 (355)
                      +..++|++|+++||.+|++.        +++++..+|+. +++|++   ++||     +++  ..|+.++..+|||.|.+
T Consensus        37 ~~~~~a~~~~~~G~~~i~~~--------~~~~i~~i~~~-~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l  107 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRAN--------SVRDIKEIQAI-TDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAM  107 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEEE--------SHHHHHHHHTT-CCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEE
T ss_pred             hHHHHHHHHHHCCCcEeecC--------CHHHHHHHHHh-CCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEE
Confidence            78899999999999999985        67999999986 899996   6775     343  46999999999999999


Q ss_pred             HHhcCCH---HHHHHHHHHHHHc--CCcEEEEeCCHHHHHHHhccCCCeEE-----EeeCCCCCccccChhhHHhhhc
Q 018446          268 IAAVLPD---LDIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELI-----GINNRNLETFEVDNSNTKKLLE  335 (355)
Q Consensus       268 IaaiL~~---~~L~~L~~~A~~L--GLeaLVEVH~~eELerAl~l~ga~iI-----GINNRdL~TfevDl~~t~~L~~  335 (355)
                      ....+..   ..+.++++.++++  |+..++++|+.+|+.++... |++.|     |+|+....++..+++...++.+
T Consensus       108 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~-Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~  184 (234)
T 1yxy_A          108 DCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQA-GIDFVGTTLSGYTPYSRQEAGPDVALIEALCK  184 (234)
T ss_dssp             ECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT-TCSEEECTTTTSSTTSCCSSSCCHHHHHHHHH
T ss_pred             cccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc-CCCEEeeeccccCCCCcCCCCCCHHHHHHHHh
Confidence            8887743   3677889999988  99999999999999999986 99999     6777665566778877777765

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=99.23  E-value=1.7e-11  Score=109.24  Aligned_cols=133  Identities=14%  Similarity=0.257  Sum_probs=106.4

Q ss_pred             CCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---cccc-----ccC--HHHHHHHHHcCC
Q 018446          193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKEF-----IVD--AWQIYYARTKGA  262 (355)
Q Consensus       193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rKDF-----IId--pyQI~eAr~~GA  262 (355)
                      +....++.++|+.|+++||.+|++.        +.+.++.+|+. +++|++   ++||     +++  ..|+.++..+||
T Consensus        19 ~~~~~~~~~~a~~~~~~Ga~~i~~~--------~~~~i~~i~~~-~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Ga   89 (223)
T 1y0e_A           19 LHSSFIMSKMALAAYEGGAVGIRAN--------TKEDILAIKET-VDLPVIGIVKRDYDHSDVFITATSKEVDELIESQC   89 (223)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEEE--------SHHHHHHHHHH-CCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTC
T ss_pred             CCCCccHHHHHHHHHHCCCeeeccC--------CHHHHHHHHHh-cCCCEEeeeccCCCccccccCCcHHHHHHHHhCCC
Confidence            4444678899999999999999874        68999999996 899997   5663     444  459999999999


Q ss_pred             cchHHHHhcCCH--HHHHHHHHHHHHc--CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCc-------cccChhhHH
Q 018446          263 DAVLLIAAVLPD--LDIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLET-------FEVDNSNTK  331 (355)
Q Consensus       263 DAVLLIaaiL~~--~~L~~L~~~A~~L--GLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~T-------fevDl~~t~  331 (355)
                      |.|.+....+..  ..+.++++.++++  |+.+++++|+.+|+.++... |+++|++++.....       ...+++...
T Consensus        90 d~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~-G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~  168 (223)
T 1y0e_A           90 EVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARL-GFDYIGTTLHGYTSYTQGQLLYQNDFQFLK  168 (223)
T ss_dssp             SEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-TCSEEECTTTTSSTTSTTCCTTHHHHHHHH
T ss_pred             CEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCCCHHHHHHHHHc-CCCEEEeCCCcCcCCCCCCCCCcccHHHHH
Confidence            999998887643  4678899999999  99999999999999999886 99999998864322       334445555


Q ss_pred             hhhc
Q 018446          332 KLLE  335 (355)
Q Consensus       332 ~L~~  335 (355)
                      ++.+
T Consensus       169 ~~~~  172 (223)
T 1y0e_A          169 DVLQ  172 (223)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5544

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=99.20  E-value=5.1e-11  Score=107.74  Aligned_cols=139  Identities=24%  Similarity=0.190  Sum_probs=110.5

Q ss_pred             CCCCHHHHHHHHHHcCceEEEEeccCC-CCCCCH---HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446          195 EDFDPVEIARSYEKGGAACLSILTDEK-YFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISVLTD~~-fF~GS~---edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa  270 (355)
                      ...||.++|+.|+++||++|+|. |.. .|.|..   +.++.+++. +++||+...+|.++.|+.++...|||+|++..+
T Consensus        29 ~~~d~~~~a~~~~~~Gad~i~v~-d~~~~~~~~~~~~~~i~~i~~~-~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~  106 (252)
T 1ka9_F           29 DAGDPVEAARAYDEAGADELVFL-DISATHEERAILLDVVARVAER-VFIPLTVGGGVRSLEDARKLLLSGADKVSVNSA  106 (252)
T ss_dssp             STTCHHHHHHHHHHHTCSCEEEE-ECCSSTTCHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred             ecCCHHHHHHHHHHcCCCEEEEE-cCCccccCccccHHHHHHHHHh-CCCCEEEECCcCCHHHHHHHHHcCCCEEEEChH
Confidence            45699999999999999999887 555 444544   447778875 899999999999999999999999999999988


Q ss_pred             cCCH-HHHHHHHHHHH----HcCCcE-------EEEeCC---------HHHHHHHhccCCCeEEEee--CCCCCccccCh
Q 018446          271 VLPD-LDIRYMTKICK----LLGLTA-------LVEVHD---------EREMDRVLGIEGIELIGIN--NRNLETFEVDN  327 (355)
Q Consensus       271 iL~~-~~L~~L~~~A~----~LGLea-------LVEVH~---------~eELerAl~l~ga~iIGIN--NRdL~TfevDl  327 (355)
                      .+.+ +.+.++.+...    .+|+++       .|++|+         .++++++.++ |+..|.++  +||.....+|+
T Consensus       107 ~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~-G~~~i~~~~~~~~g~~~g~~~  185 (252)
T 1ka9_F          107 AVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVEL-GAGEILLTSMDRDGTKEGYDL  185 (252)
T ss_dssp             HHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHH-TCCEEEEEETTTTTTCSCCCH
T ss_pred             HHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHc-CCCEEEEecccCCCCcCCCCH
Confidence            8853 34566655542    367776       677775         5667888886 89988888  56777778899


Q ss_pred             hhHHhhhcc
Q 018446          328 SNTKKLLEG  336 (355)
Q Consensus       328 ~~t~~L~~~  336 (355)
                      +...++.+.
T Consensus       186 ~~i~~l~~~  194 (252)
T 1ka9_F          186 RLTRMVAEA  194 (252)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998888764

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=99.19  E-value=2.5e-11  Score=109.78  Aligned_cols=135  Identities=19%  Similarity=0.173  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCH--HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSF--ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL  275 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~--edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~  275 (355)
                      ||.++|+.|+++||++|+|.+...+|.|..  +.++.+++. +++|++.+.+|.++.|+.++..+|||+|.+....+.+.
T Consensus        33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~~~i~~i~~~-~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~~p  111 (244)
T 1vzw_A           33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQA-MDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETP  111 (244)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCHHHHHHHHHH-CSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCH
T ss_pred             CHHHHHHHHHHcCCCEEEEecCchhhcCCChHHHHHHHHHh-cCCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhhCH
Confidence            899999999999999999998766776665  558888886 89999999999999999999999999999988887532


Q ss_pred             HHHHHHHHHHHcC------CcEE---EEeC-------CHHH-HHHHhccCCCeEEEeeC--CCCCccccChhhHHhhhcc
Q 018446          276 DIRYMTKICKLLG------LTAL---VEVH-------DERE-MDRVLGIEGIELIGINN--RNLETFEVDNSNTKKLLEG  336 (355)
Q Consensus       276 ~L~~L~~~A~~LG------LeaL---VEVH-------~~eE-LerAl~l~ga~iIGINN--RdL~TfevDl~~t~~L~~~  336 (355)
                        ..+.+..+.+|      +++.   |++|       +..| ++++.++ |++.|.+++  |+.....+|++...++.+.
T Consensus       112 --~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~-G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~  188 (244)
T 1vzw_A          112 --EWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKE-GCARYVVTDIAKDGTLQGPNLELLKNVCAA  188 (244)
T ss_dssp             --HHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHT-TCCCEEEEEC-------CCCHHHHHHHHHT
T ss_pred             --HHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhC-CCCEEEEeccCcccccCCCCHHHHHHHHHh
Confidence              23444455544      4443   5566       5555 4778886 999999998  5555566899999998764

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=98.98  E-value=8.9e-11  Score=106.33  Aligned_cols=135  Identities=20%  Similarity=0.151  Sum_probs=102.3

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCC----CCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKY----FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~f----F~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      .||.++|+.|+++||++|.| +|...    .+-.++.++.++ . +++||+...+|-++.|+.++...|||+|.+..+.|
T Consensus        30 ~~~~~~a~~~~~~Gad~i~v-~d~~~~~~~~~~~~~~i~~i~-~-~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l  106 (241)
T 1qo2_A           30 KDPVELVEKLIEEGFTLIHV-VDLSNAIENSGENLPVLEKLS-E-FAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL  106 (241)
T ss_dssp             SCHHHHHHHHHHTTCCCEEE-EEHHHHHHCCCTTHHHHHHGG-G-GGGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHH
T ss_pred             cCHHHHHHHHHHcCCCEEEE-ecccccccCCchhHHHHHHHH-h-cCCcEEEECCCCCHHHHHHHHHCCCCEEEECchHh
Confidence            58999999999999999998 77543    233466666666 5 78999999999999999999999999999888887


Q ss_pred             CHHH-HHHHHHHH---HHcCCcE---EEEeC--------CHHHH-HHHhccCCCeEEEeeCC--CCCccccChhhHHhhh
Q 018446          273 PDLD-IRYMTKIC---KLLGLTA---LVEVH--------DEREM-DRVLGIEGIELIGINNR--NLETFEVDNSNTKKLL  334 (355)
Q Consensus       273 ~~~~-L~~L~~~A---~~LGLea---LVEVH--------~~eEL-erAl~l~ga~iIGINNR--dL~TfevDl~~t~~L~  334 (355)
                      .+.+ +.++ +..   ..+|+++   .|++|        +..|+ +++.++ |+..|.++++  |-....+|++...++.
T Consensus       107 ~~p~~~~~~-~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~-G~~~i~~t~~~~~g~~~g~~~~~i~~l~  184 (241)
T 1qo2_A          107 EDPSFLKSL-REIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEY-GLEEIVHTEIEKDGTLQEHDFSLTKKIA  184 (241)
T ss_dssp             HCTTHHHHH-HTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTT-TCCEEEEEETTHHHHTCCCCHHHHHHHH
T ss_pred             hChHHHHHH-HHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhC-CCCEEEEEeecccccCCcCCHHHHHHHH
Confidence            5433 3333 221   1345666   66666        66775 567776 9999999995  4445668898888887


Q ss_pred             cc
Q 018446          335 EG  336 (355)
Q Consensus       335 ~~  336 (355)
                      +.
T Consensus       185 ~~  186 (241)
T 1qo2_A          185 IE  186 (241)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=98.89  E-value=4.7e-09  Score=93.11  Aligned_cols=125  Identities=13%  Similarity=0.047  Sum_probs=95.3

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeec-cccccCHHHHHHHHHcCCcchHHHHhcCCHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC-KEFIVDAWQIYYARTKGADAVLLIAAVLPDLD  276 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLr-KDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~  276 (355)
                      ++.++++.|.++|+.+|.+ +++.  .+..+.++.+++. .++|++- -.++.+++|+..|..+|||+|.     ++. .
T Consensus        20 ~~~~~~~~~~~~G~~~i~l-~~~~--~~~~~~i~~i~~~-~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~-----~~~-~   89 (212)
T 2v82_A           20 EALAHVGAVIDAGFDAVEI-PLNS--PQWEQSIPAIVDA-YGDKALIGAGTVLKPEQVDALARMGCQLIV-----TPN-I   89 (212)
T ss_dssp             HHHHHHHHHHHHTCCEEEE-ETTS--TTHHHHHHHHHHH-HTTTSEEEEECCCSHHHHHHHHHTTCCEEE-----CSS-C
T ss_pred             HHHHHHHHHHHCCCCEEEE-eCCC--hhHHHHHHHHHHh-CCCCeEEEeccccCHHHHHHHHHcCCCEEE-----eCC-C
Confidence            5788999999999999998 6554  2345667777663 4556443 3566789999999999999996     222 1


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccc
Q 018446          277 IRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGE  337 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~  337 (355)
                      ..++++.++++|+..++++||.+|+.++... |++.|+|+..    ...+++...++.+..
T Consensus        90 ~~~~~~~~~~~g~~~~~g~~t~~e~~~a~~~-G~d~v~v~~t----~~~g~~~~~~l~~~~  145 (212)
T 2v82_A           90 HSEVIRRAVGYGMTVCPGCATATEAFTALEA-GAQALKIFPS----SAFGPQYIKALKAVL  145 (212)
T ss_dssp             CHHHHHHHHHTTCEEECEECSHHHHHHHHHT-TCSEEEETTH----HHHCHHHHHHHHTTS
T ss_pred             CHHHHHHHHHcCCCEEeecCCHHHHHHHHHC-CCCEEEEecC----CCCCHHHHHHHHHhc
Confidence            2356789999999999999999999999886 9999999653    245667777776543

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=98.80  E-value=2e-08  Score=89.15  Aligned_cols=138  Identities=21%  Similarity=0.204  Sum_probs=102.1

Q ss_pred             CCCCHHHHHHHHHHcCceEEEEeccCCCCC---CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446          195 EDFDPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~---GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      ...++.++++.|+++||++|.|..-...|.   ..++.++.+++. +++||+..+.|.++.|+.++..+|||+|.+....
T Consensus        31 ~~~~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~-~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~  109 (253)
T 1h5y_A           31 EVGDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEA-VSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAA  109 (253)
T ss_dssp             EEECHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHH-CSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred             ecccHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEChHH
Confidence            345899999999999999999862111111   246778888886 7999999999999999999999999999998877


Q ss_pred             CCHHHHHHHHHHHHHcCCcEE--------------EEeC---------CHHHHHHHhccCCCeEEEeeCCCCCcc--ccC
Q 018446          272 LPDLDIRYMTKICKLLGLTAL--------------VEVH---------DEREMDRVLGIEGIELIGINNRNLETF--EVD  326 (355)
Q Consensus       272 L~~~~L~~L~~~A~~LGLeaL--------------VEVH---------~~eELerAl~l~ga~iIGINNRdL~Tf--evD  326 (355)
                      +.+  ...+.++++.+|++.+              |-+|         ..+.++.+.++ |++.|.+++++....  ..|
T Consensus       110 ~~~--~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~-G~d~i~~~~~~~~g~~~~~~  186 (253)
T 1h5y_A          110 VRN--PQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEEL-GAGEILLTSIDRDGTGLGYD  186 (253)
T ss_dssp             HHC--THHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHH-TCSEEEEEETTTTTTCSCCC
T ss_pred             hhC--cHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhC-CCCEEEEecccCCCCcCcCC
Confidence            743  2345667777886522              2222         24557777776 999999999987544  346


Q ss_pred             hhhHHhhhcc
Q 018446          327 NSNTKKLLEG  336 (355)
Q Consensus       327 l~~t~~L~~~  336 (355)
                      ++...++.+.
T Consensus       187 ~~~i~~l~~~  196 (253)
T 1h5y_A          187 VELIRRVADS  196 (253)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777777653

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=98.79  E-value=1.2e-09  Score=102.26  Aligned_cols=112  Identities=18%  Similarity=0.134  Sum_probs=89.0

Q ss_pred             HHHHHHHHHcCceEE----EEeccCCCCCC-----CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446          200 VEIARSYEKGGAACL----SILTDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaI----SVLTD~~fF~G-----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa  270 (355)
                      .++|+.|.++||.+|    +|.+|..+|+|     +++.++.+|+. +++|++.++.+-+..++..+..+|||+|... .
T Consensus        31 ~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~-~~~Pvi~~~~~~~~~~~~~~~~aGad~v~~~-~  108 (297)
T 2zbt_A           31 PEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAA-VSIPVMAKVRIGHFVEAMILEAIGVDFIDES-E  108 (297)
T ss_dssp             HHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTT-CSSCEEEEEETTCHHHHHHHHHTTCSEEEEE-T
T ss_pred             HHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHh-cCCCeEEEeccCCHHHHHHHHHCCCCEEeee-C
Confidence            689999999999999    56788788888     89999999985 8999998766667888888999999999221 1


Q ss_pred             cCCHHHHHHHHHHHHH--cCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          271 VLPDLDIRYMTKICKL--LGLTALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       271 iL~~~~L~~L~~~A~~--LGLeaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                      ..+   +.++++.+++  +++..+++|||.+|+.++.+. |+++|++++
T Consensus       109 ~~~---~~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~~-Gad~I~v~G  153 (297)
T 2zbt_A          109 VLT---PADEEHHIDKWKFKVPFVCGARNLGEALRRIAE-GAAMIRTKG  153 (297)
T ss_dssp             TSC---CSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHT-TCSEEEECC
T ss_pred             CCC---hHHHHHHHHHhCCCceEEeecCCHHHHHHHHHc-CCCEEEEcc
Confidence            111   1233444443  488888999999999999886 999999985

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=98.73  E-value=3.7e-08  Score=86.69  Aligned_cols=135  Identities=15%  Similarity=0.169  Sum_probs=102.9

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCC--CCCeeccccccCHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIY  255 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v--~lPVLrKDFIIdpyQI~  255 (355)
                      .+|+=++-.++.        +..++++.+.++|+.+|+|.++..   +..+.++.+|+. .  +++ +--+.+.++.|+.
T Consensus        11 ~~i~~~~~~~~~--------~~~~~~~~~~~~G~~~iev~~~~~---~~~~~i~~ir~~-~~~~~~-ig~~~v~~~~~~~   77 (205)
T 1wa3_A           11 KIVAVLRANSVE--------EAKEKALAVFEGGVHLIEITFTVP---DADTVIKELSFL-KEKGAI-IGAGTVTSVEQCR   77 (205)
T ss_dssp             CEEEEECCSSHH--------HHHHHHHHHHHTTCCEEEEETTST---THHHHHHHTHHH-HHTTCE-EEEESCCSHHHHH
T ss_pred             CEEEEEecCCHH--------HHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHH-CCCCcE-EEecccCCHHHHH
Confidence            467767655553        477899999999999999987743   456778888875 2  222 3334567999999


Q ss_pred             HHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhc
Q 018446          256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE  335 (355)
Q Consensus       256 eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~  335 (355)
                      +|...|||.|  +...++    .+++++|+++|+..+.++||..|+.+|+++ |+++|.++..+.    ..++...++.+
T Consensus        78 ~a~~~Gad~i--v~~~~~----~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~-Gad~vk~~~~~~----~g~~~~~~l~~  146 (205)
T 1wa3_A           78 KAVESGAEFI--VSPHLD----EEISQFCKEKGVFYMPGVMTPTELVKAMKL-GHTILKLFPGEV----VGPQFVKAMKG  146 (205)
T ss_dssp             HHHHHTCSEE--ECSSCC----HHHHHHHHHHTCEEECEECSHHHHHHHHHT-TCCEEEETTHHH----HHHHHHHHHHT
T ss_pred             HHHHcCCCEE--EcCCCC----HHHHHHHHHcCCcEECCcCCHHHHHHHHHc-CCCEEEEcCccc----cCHHHHHHHHH
Confidence            9999999999  445555    357899999999999999999999999997 999999987533    23455555554


Q ss_pred             c
Q 018446          336 G  336 (355)
Q Consensus       336 ~  336 (355)
                      .
T Consensus       147 ~  147 (205)
T 1wa3_A          147 P  147 (205)
T ss_dssp             T
T ss_pred             h
Confidence            3

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=98.70  E-value=5.2e-09  Score=96.20  Aligned_cols=145  Identities=15%  Similarity=0.255  Sum_probs=99.5

Q ss_pred             ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccC-------CCCCCCHHHHHHHHhcCCCCCeecccccc
Q 018446          177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDE-------KYFKGSFENLEAVRSAGVKCPLLCKEFIV  249 (355)
Q Consensus       177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~-------~fF~GS~edL~~VR~a~v~lPVLrKDFII  249 (355)
                      ..++.-+.-.- .-|.+....|+..+++.|+++|+++|.+  ++       ++|.|+...+..+.. +.  ++ +||+ +
T Consensus        26 ~~~~~~id~~~-~l~p~~~~~~~~~~~~~~~~~g~~~i~~--~~~~~~~~~~~~~~~~~~~v~~~~-~~--~~-~~d~-~   97 (273)
T 2qjg_A           26 KTVIVPMDHGV-SNGPIKGLIDIRKTVNDVAEGGANAVLL--HKGIVRHGHRGYGKDVGLIIHLSG-GT--AI-SPNP-L   97 (273)
T ss_dssp             CEEEEECCHHH-HHCSCTTSSSHHHHHHHHHHHTCSEEEE--CHHHHHSCCCSSSCCCEEEEECEE-CC--TT-SSST-T
T ss_pred             CEEEEEccccc-ccCCCcchhhHHHHHHHHHhcCCCEEEe--CHHHHHHHHHhhcCCCCEEEEEcC-CC--cC-CCCc-c
Confidence            35666665411 0223556679999999999999999975  33       223332111111110 11  22 6774 5


Q ss_pred             C---HHHHHHHHHcCCcch--HHHHhcCCHH----HHHHHHHHHHHcCCcEEEEe----------CCH---HHH-HHHhc
Q 018446          250 D---AWQIYYARTKGADAV--LLIAAVLPDL----DIRYMTKICKLLGLTALVEV----------HDE---REM-DRVLG  306 (355)
Q Consensus       250 d---pyQI~eAr~~GADAV--LLIaaiL~~~----~L~~L~~~A~~LGLeaLVEV----------H~~---eEL-erAl~  306 (355)
                      +   .+|+.+|...|||.|  .++...++.+    +++.+.+.|+.+|+..++|+          ++.   +|+ +.|.+
T Consensus        98 ~~~~~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~  177 (273)
T 2qjg_A           98 KKVIVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAE  177 (273)
T ss_dssp             CCEECSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHH
Confidence            5   899999999999999  7777777764    47788899999999999999          555   555 66777


Q ss_pred             cCCCeEEEeeCCCCCccccChhhHHhhhcc
Q 018446          307 IEGIELIGINNRNLETFEVDNSNTKKLLEG  336 (355)
Q Consensus       307 l~ga~iIGINNRdL~TfevDl~~t~~L~~~  336 (355)
                      + |+++|++++      ..|++...++.+.
T Consensus       178 ~-Gad~i~~~~------~~~~~~l~~i~~~  200 (273)
T 2qjg_A          178 L-GADIVKTSY------TGDIDSFRDVVKG  200 (273)
T ss_dssp             T-TCSEEEECC------CSSHHHHHHHHHH
T ss_pred             c-CCCEEEECC------CCCHHHHHHHHHh
Confidence            5 999999995      3688888887654

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=98.67  E-value=7.9e-08  Score=92.18  Aligned_cols=124  Identities=19%  Similarity=0.249  Sum_probs=95.0

Q ss_pred             CCCCCCHHHHHHHHHHcCceEEEEecc----------CCCCCCCHHHHHHHHhcCCCCCeecc--ccccCHHHHHHHHHc
Q 018446          193 LREDFDPVEIARSYEKGGAACLSILTD----------EKYFKGSFENLEAVRSAGVKCPLLCK--EFIVDAWQIYYARTK  260 (355)
Q Consensus       193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD----------~~fF~GS~edL~~VR~a~v~lPVLrK--DFIIdpyQI~eAr~~  260 (355)
                      +..++++..+++.++..||++|.|.++          ...|.|.++.+..+|+. +++||+.|  +|++++.++..+..+
T Consensus       123 i~~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~-~~~Pv~vK~~~~~~~~~~a~~a~~~  201 (349)
T 1p0k_A          123 LGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSR-VSVPVIVKEVGFGMSKASAGKLYEA  201 (349)
T ss_dssp             EETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHH-CSSCEEEEEESSCCCHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHH-cCCCEEEEecCCCCCHHHHHHHHHc
Confidence            333567888999999999999999987          23555667899999986 89999999  788999999999999


Q ss_pred             CCcchHHHH------------hc-------C--CHHHHHHHHHHHHHc-CCcEEEE--eCCHHHHHHHhccCCCeEEEee
Q 018446          261 GADAVLLIA------------AV-------L--PDLDIRYMTKICKLL-GLTALVE--VHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       261 GADAVLLIa------------ai-------L--~~~~L~~L~~~A~~L-GLeaLVE--VH~~eELerAl~l~ga~iIGIN  316 (355)
                      |||+|.++.            .-       +  .......+.+++..+ ++..+.+  |++.+++.+++.+ ||+.++|-
T Consensus       202 Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~-GAd~V~iG  280 (349)
T 1p0k_A          202 GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIAL-GASCTGMA  280 (349)
T ss_dssp             TCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT-TCSEEEEC
T ss_pred             CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHc-CCCEEEEc
Confidence            999999952            10       1  111333455555555 6766664  8999999999997 99999986


Q ss_pred             CC
Q 018446          317 NR  318 (355)
Q Consensus       317 NR  318 (355)
                      .-
T Consensus       281 ~~  282 (349)
T 1p0k_A          281 GH  282 (349)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=98.60  E-value=2.8e-08  Score=96.96  Aligned_cols=151  Identities=14%  Similarity=0.163  Sum_probs=110.1

Q ss_pred             EeEeeecCCCCCCCCC--CCCH---HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeec--cccccCHH
Q 018446          180 IAEVKKASPSRGILRE--DFDP---VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC--KEFIVDAW  252 (355)
Q Consensus       180 IAEvKRaSPSkG~I~~--~~Dp---~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLr--KDFIIdpy  252 (355)
                      |.|+++++|..++++-  .-|+   .++++.++++|+.+|.|.+|..+|++...++   |. +..+|+..  ++|+-+++
T Consensus       114 ieev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~---r~-~~~~p~~~~~~~~~~~~~  189 (370)
T 1gox_A          114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI---KN-RFVLPPFLTLKNFEGIDL  189 (370)
T ss_dssp             HHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHH---HT-TCCCCTTCCCGGGSSSCC
T ss_pred             HHHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHH---Hh-ccCCCcccchhhhhhhhh
Confidence            4677777775555541  2233   4678889999999999999999999999887   55 36788765  78887778


Q ss_pred             HHHHHHHcCCcchHHHHhcCCHH-HHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEEeeC---CCCCccccCh
Q 018446          253 QIYYARTKGADAVLLIAAVLPDL-DIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGINN---RNLETFEVDN  327 (355)
Q Consensus       253 QI~eAr~~GADAVLLIaaiL~~~-~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIGINN---RdL~TfevDl  327 (355)
                      |..+. ..|++...++...+++. .++.+..+++..++..+| ++++.++++++.++ |++.|.|+|   |.+.+...++
T Consensus       190 ~~~~~-~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~-Gad~I~vs~~ggr~~~~~~~~~  267 (370)
T 1gox_A          190 GKMDK-ANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQH-GAAGIIVSNHGARQLDYVPATI  267 (370)
T ss_dssp             C----------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHHHHT-TCSEEEECCGGGTSSTTCCCHH
T ss_pred             hcccc-ccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEEEecCCHHHHHHHHHc-CCCEEEECCCCCccCCCcccHH
Confidence            87643 56888777887766554 456677788889999999 99999999999997 999999998   7777766666


Q ss_pred             hhHHhhhcc
Q 018446          328 SNTKKLLEG  336 (355)
Q Consensus       328 ~~t~~L~~~  336 (355)
                      +...++.+.
T Consensus       268 ~~l~~v~~~  276 (370)
T 1gox_A          268 MALEEVVKA  276 (370)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666543

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=98.28  E-value=5e-07  Score=79.63  Aligned_cols=131  Identities=11%  Similarity=0.149  Sum_probs=94.4

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccC---HHHHHHHHHcCCcchHHHHhcCCHHH
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD---AWQIYYARTKGADAVLLIAAVLPDLD  276 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIId---pyQI~eAr~~GADAVLLIaaiL~~~~  276 (355)
                      .++++... +|++.|-+=+ |.++.+.++.++.+|+...++||.+ |+++.   .|++.++..+|||+|++.... .++.
T Consensus        16 ~~~~~~~~-~~~diie~G~-p~~~~~g~~~i~~ir~~~~~~~i~~-~~~~~~~~~~~~~~~~~~Gad~v~v~~~~-~~~~   91 (211)
T 3f4w_A           16 MVFMDKVV-DDVDIIEVGT-PFLIREGVNAIKAIKEKYPHKEVLA-DAKIMDGGHFESQLLFDAGADYVTVLGVT-DVLT   91 (211)
T ss_dssp             HHHHHHHG-GGCSEEEECH-HHHHHHTTHHHHHHHHHCTTSEEEE-EEEECSCHHHHHHHHHHTTCSEEEEETTS-CHHH
T ss_pred             HHHHHHhh-cCccEEEeCc-HHHHhccHHHHHHHHHhCCCCEEEE-EEEeccchHHHHHHHHhcCCCEEEEeCCC-ChhH
Confidence            35666664 5888877765 3335667899999998535889855 66554   567999999999999997654 3568


Q ss_pred             HHHHHHHHHHcCCcEEEEeC---CH-HHHHHHhccCCCeEEEeeCC-CCCcccc-ChhhHHhhhc
Q 018446          277 IRYMTKICKLLGLTALVEVH---DE-REMDRVLGIEGIELIGINNR-NLETFEV-DNSNTKKLLE  335 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH---~~-eELerAl~l~ga~iIGINNR-dL~Tfev-Dl~~t~~L~~  335 (355)
                      +.++++.++++|+.+++|+.   +. ++++++.+. |+++|++|+- +-.+|.. +++...++.+
T Consensus        92 ~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~-g~d~i~v~~g~~g~~~~~~~~~~i~~l~~  155 (211)
T 3f4w_A           92 IQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEA-GADMLAVHTGTDQQAAGRKPIDDLITMLK  155 (211)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHH-TCCEEEEECCHHHHHTTCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHc-CCCEEEEcCCCcccccCCCCHHHHHHHHH
Confidence            89999999999999999964   43 558888886 8999999732 2223322 4455555543

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=97.84  E-value=0.00017  Score=65.51  Aligned_cols=119  Identities=12%  Similarity=0.165  Sum_probs=92.5

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA  257 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA  257 (355)
                      .||+=+..-++.        +..++++...++|+.+|=+- +..  .+..+-++.+++. ..-.++.-+.+++..|+..|
T Consensus        17 ~~i~v~r~~~~~--------~~~~~~~al~~gGv~~iel~-~k~--~~~~~~i~~l~~~-~~~~~vgagtvi~~d~~~~A   84 (214)
T 1wbh_A           17 PVVPVIVVKKLE--------HAVPMAKALVAGGVRVLNVT-LRT--ECAVDAIRAIAKE-VPEAIVGAGTVLNPQQLAEV   84 (214)
T ss_dssp             SEEEEECCSSGG--------GHHHHHHHHHHTTCCEEEEE-SCS--TTHHHHHHHHHHH-CTTSEEEEESCCSHHHHHHH
T ss_pred             CEEEEEECCCHH--------HHHHHHHHHHHcCCCEEEEe-CCC--hhHHHHHHHHHHH-CcCCEEeeCEEEEHHHHHHH
Confidence            477777555553        56789999999999988664 443  3456777777664 32234455678999999999


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      ..+|||.|.     ++. .-.+..+.|+.+|+..+.-+||.+|+.+|+.. |++.|++
T Consensus        85 ~~aGAd~v~-----~p~-~d~~v~~~~~~~g~~~i~G~~t~~e~~~A~~~-Gad~v~~  135 (214)
T 1wbh_A           85 TEAGAQFAI-----SPG-LTEPLLKAATEGTIPLIPGISTVSELMLGMDY-GLKEFKF  135 (214)
T ss_dssp             HHHTCSCEE-----ESS-CCHHHHHHHHHSSSCEEEEESSHHHHHHHHHT-TCCEEEE
T ss_pred             HHcCCCEEE-----cCC-CCHHHHHHHHHhCCCEEEecCCHHHHHHHHHC-CCCEEEE
Confidence            999999985     332 33467899999999999999999999999996 9999999

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=97.78  E-value=9.3e-05  Score=64.64  Aligned_cols=121  Identities=18%  Similarity=0.144  Sum_probs=82.5

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      ++.+.++.+.++||++| .++++.   .+.    +.++.+++.  ...+|++..|      ++..+..+|||.|.+-..-
T Consensus        27 ~~~~~~~~~~~~G~~~i-~l~~~~---~~~~~~~~~~~~l~~~~~~~~v~v~v~~------~~~~a~~~gad~v~l~~~~   96 (215)
T 1xi3_A           27 PEVESVREALEGGATAI-QMRIKN---APTREMYEIGKTLRQLTREYDALFFVDD------RVDVALAVDADGVQLGPED   96 (215)
T ss_dssp             CHHHHHHHHHHTTCSEE-EECCCS---CCHHHHHHHHHHHHHHHHHTTCEEEEES------CHHHHHHHTCSEEEECTTS
T ss_pred             hHHHHHHHHHHCCCCEE-EECCCC---CCHHHHHHHHHHHHHHHHHcCCeEEEcC------hHHHHHHcCCCEEEECCcc
Confidence            89999999999999999 566543   343    333334331  1356666654      4577889999999776555


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCc------cccChhhHHhhhc
Q 018446          272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLET------FEVDNSNTKKLLE  335 (355)
Q Consensus       272 L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~T------fevDl~~t~~L~~  335 (355)
                      ++.+.++.+    . .|+-..+++||.+|+.++... |++.|.+++.. .|      ...+++...++.+
T Consensus        97 ~~~~~~~~~----~-~~~~~~v~~~t~~e~~~~~~~-g~d~i~~~~~~-~~~~~~~~~~~~~~~l~~l~~  159 (215)
T 1xi3_A           97 MPIEVAKEI----A-PNLIIGASVYSLEEALEAEKK-GADYLGAGSVF-PTKTKEDARVIGLEGLRKIVE  159 (215)
T ss_dssp             CCHHHHHHH----C-TTSEEEEEESSHHHHHHHHHH-TCSEEEEECSS-CC----CCCCCHHHHHHHHHH
T ss_pred             CCHHHHHHh----C-CCCEEEEecCCHHHHHHHHhc-CCCEEEEcCCc-cCCCCCCCCCcCHHHHHHHHH
Confidence            655444443    2 588899999999999998876 99999997642 22      2345555555543

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=97.68  E-value=0.00029  Score=65.50  Aligned_cols=118  Identities=16%  Similarity=0.259  Sum_probs=97.0

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE-eccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-LTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY  256 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV-LTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~e  256 (355)
                      .||+=+.-.+|.        +...+|++..++|+.+|=| ++.+    +.++.++.+|+. +.-.++--.-+++.-|...
T Consensus        35 ~vv~Vir~~~~~--------~a~~~a~al~~gGi~~iEvt~~t~----~a~e~I~~l~~~-~~~~~iGaGTVlt~~~a~~  101 (232)
T 4e38_A           35 KVIPVIAIDNAE--------DIIPLGKVLAENGLPAAEITFRSD----AAVEAIRLLRQA-QPEMLIGAGTILNGEQALA  101 (232)
T ss_dssp             CEEEEECCSSGG--------GHHHHHHHHHHTTCCEEEEETTST----THHHHHHHHHHH-CTTCEEEEECCCSHHHHHH
T ss_pred             CEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEeCCCC----CHHHHHHHHHHh-CCCCEEeECCcCCHHHHHH
Confidence            478777666664        5889999999999999998 3333    467899999885 4345666677899999999


Q ss_pred             HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      |..+|||-|.+-      ..-.+++++|++.|+-.+--|.|..|+.+|+++ |+++|++
T Consensus       102 Ai~AGA~fIvsP------~~~~~vi~~~~~~gi~~ipGv~TptEi~~A~~~-Gad~vK~  153 (232)
T 4e38_A          102 AKEAGATFVVSP------GFNPNTVRACQEIGIDIVPGVNNPSTVEAALEM-GLTTLKF  153 (232)
T ss_dssp             HHHHTCSEEECS------SCCHHHHHHHHHHTCEEECEECSHHHHHHHHHT-TCCEEEE
T ss_pred             HHHcCCCEEEeC------CCCHHHHHHHHHcCCCEEcCCCCHHHHHHHHHc-CCCEEEE
Confidence            999999998642      233567899999999999999999999999997 9999988

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=97.62  E-value=0.00024  Score=65.16  Aligned_cols=119  Identities=18%  Similarity=0.290  Sum_probs=89.3

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA  257 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA  257 (355)
                      .||+=+.-.++.        +..++++...++|+.+|=+- +..  ....+.++.+++...++- +--+.+++..|+..|
T Consensus        18 ~ii~vir~~~~~--------~~~~~~~al~~gGv~~iel~-~k~--~~~~~~i~~l~~~~~~l~-vgaGtvl~~d~~~~A   85 (224)
T 1vhc_A           18 KIVPVIALDNAD--------DILPLADTLAKNGLSVAEIT-FRS--EAAADAIRLLRANRPDFL-IAAGTVLTAEQVVLA   85 (224)
T ss_dssp             CEEEEECCSSGG--------GHHHHHHHHHHTTCCEEEEE-TTS--TTHHHHHHHHHHHCTTCE-EEEESCCSHHHHHHH
T ss_pred             CeEEEEeCCCHH--------HHHHHHHHHHHcCCCEEEEe-ccC--chHHHHHHHHHHhCcCcE-EeeCcEeeHHHHHHH
Confidence            366655444443        56789999999999998764 443  244677776766422222 233567799999999


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      ..+|||.|.     ++. .-..+++.|+++|+..++-|||.+|+.+|... |++.|++
T Consensus        86 ~~aGAd~v~-----~p~-~d~~v~~~ar~~g~~~i~Gv~t~~e~~~A~~~-Gad~vk~  136 (224)
T 1vhc_A           86 KSSGADFVV-----TPG-LNPKIVKLCQDLNFPITPGVNNPMAIEIALEM-GISAVKF  136 (224)
T ss_dssp             HHHTCSEEE-----CSS-CCHHHHHHHHHTTCCEECEECSHHHHHHHHHT-TCCEEEE
T ss_pred             HHCCCCEEE-----ECC-CCHHHHHHHHHhCCCEEeccCCHHHHHHHHHC-CCCEEEE
Confidence            999999993     332 33567889999999999999999999999996 9999999

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=97.55  E-value=4e-05  Score=71.27  Aligned_cols=125  Identities=18%  Similarity=0.105  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCC-----CC-CCH-HHHHHH------HhcCCCCCeeccccccCHHHHHHHHHcCCcc
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKY-----FK-GSF-ENLEAV------RSAGVKCPLLCKEFIVDAWQIYYARTKGADA  264 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~f-----F~-GS~-edL~~V------R~a~v~lPVLrKDFIIdpyQI~eAr~~GADA  264 (355)
                      +..+..+.-.++|+.+|=+- ++..     |+ -+. +.+..+      ++. ...|++-.    |.+|+  |+.+|||+
T Consensus        44 ~~~~~~~~al~~Gv~~vqlR-~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~-~~~~liIn----d~~~l--A~~~gAdG  115 (243)
T 3o63_A           44 DLAQFAEAALAGGVDIIQLR-DKGSPGELRFGPLQARDELAACEILADAAHR-YGALFAVN----DRADI--ARAAGADV  115 (243)
T ss_dssp             CHHHHHHHHHHTTCSEEEEC-CTTCHHHHHHCSCCHHHHHHHHHHHHHHHHH-TTCEEEEE----SCHHH--HHHHTCSE
T ss_pred             hHHHHHHHHHHCCCCEEEEc-cCCCCccccccCCCHHHHHHHHHHHHHHHHh-hCCEEEEe----CHHHH--HHHhCCCE
Confidence            56777777778898886543 4331     11 112 223222      221 34564433    67788  88899999


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCC---CCcc--ccChhhHHhhhc
Q 018446          265 VLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRN---LETF--EVDNSNTKKLLE  335 (355)
Q Consensus       265 VLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRd---L~Tf--evDl~~t~~L~~  335 (355)
                      |.|...-|+..+++.++.    .++..=+.+||.+|+.+|... |++.||+++.-   .++.  .++++...++..
T Consensus       116 VHLg~~dl~~~~~r~~~~----~~~~iG~S~ht~~Ea~~A~~~-GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~  186 (243)
T 3o63_A          116 LHLGQRDLPVNVARQILA----PDTLIGRSTHDPDQVAAAAAG-DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAE  186 (243)
T ss_dssp             EEECTTSSCHHHHHHHSC----TTCEEEEEECSHHHHHHHHHS-SCSEEEECCSSCCCC-----CCCHHHHHHHHT
T ss_pred             EEecCCcCCHHHHHHhhC----CCCEEEEeCCCHHHHHHHhhC-CCCEEEEcCccCCCCCCCcchhhHHHHHHHHH
Confidence            999999998866665432    244455588999999999986 99999999843   2222  355666666654

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=97.55  E-value=0.00031  Score=64.49  Aligned_cols=119  Identities=13%  Similarity=0.143  Sum_probs=89.4

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA  257 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA  257 (355)
                      .||+=+...++.        +..+++++..++|+.+|=+- +..  .+..+.++.+++...++-+- -+.+++..|+..|
T Consensus        27 ~ii~V~r~~~~~--------~~~~~~~al~~gGv~~iel~-~k~--~~~~~~i~~l~~~~~~~~ig-agtvl~~d~~~~A   94 (225)
T 1mxs_A           27 RILPVITIAREE--------DILPLADALAAGGIRTLEVT-LRS--QHGLKAIQVLREQRPELCVG-AGTVLDRSMFAAV   94 (225)
T ss_dssp             SEEEEECCSCGG--------GHHHHHHHHHHTTCCEEEEE-SSS--THHHHHHHHHHHHCTTSEEE-EECCCSHHHHHHH
T ss_pred             CEEEEEeCCCHH--------HHHHHHHHHHHCCCCEEEEe-cCC--ccHHHHHHHHHHhCcccEEe-eCeEeeHHHHHHH
Confidence            366666544443        57789999999999998764 432  23456666666542233332 3567899999999


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      ..+|||.|.     ++. .-..+.+.|+.+|+..+..+||.+|+.+|+.. |++.|++
T Consensus        95 ~~aGAd~v~-----~p~-~d~~v~~~~~~~g~~~i~G~~t~~e~~~A~~~-Gad~vk~  145 (225)
T 1mxs_A           95 EAAGAQFVV-----TPG-ITEDILEAGVDSEIPLLPGISTPSEIMMGYAL-GYRRFKL  145 (225)
T ss_dssp             HHHTCSSEE-----CSS-CCHHHHHHHHHCSSCEECEECSHHHHHHHHTT-TCCEEEE
T ss_pred             HHCCCCEEE-----eCC-CCHHHHHHHHHhCCCEEEeeCCHHHHHHHHHC-CCCEEEE
Confidence            999999995     332 33567899999999999999999999999996 9999999

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=97.43  E-value=0.00074  Score=60.83  Aligned_cols=117  Identities=21%  Similarity=0.255  Sum_probs=87.7

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA  257 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA  257 (355)
                      .||+=+...+|.        +..++++...++|+.+|=+ |+..-  ...+.++.+|+  .++.+- -+.+++..|+..|
T Consensus        14 ~ii~vi~~~~~~--------~~~~~~~~l~~gGv~~iel-~~k~~--~~~~~i~~~~~--~~~~~g-ag~vl~~d~~~~A   79 (207)
T 2yw3_A           14 RLLPLLTVRGGE--------DLLGLARVLEEEGVGALEI-TLRTE--KGLEALKALRK--SGLLLG-AGTVRSPKEAEAA   79 (207)
T ss_dssp             CEEEEECCCSCC--------CHHHHHHHHHHTTCCEEEE-ECSST--HHHHHHHHHTT--SSCEEE-EESCCSHHHHHHH
T ss_pred             CEEEEEeCCCHH--------HHHHHHHHHHHcCCCEEEE-eCCCh--HHHHHHHHHhC--CCCEEE-eCeEeeHHHHHHH
Confidence            467666554443        5788999999999999975 44321  22455555554  344443 3567799999999


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      ..+|||.|.     ++. .-..+.+.++.+|+..+..|||.+|+.+|... |++.|++
T Consensus        80 ~~~GAd~v~-----~~~-~d~~v~~~~~~~g~~~i~G~~t~~e~~~A~~~-Gad~v~~  130 (207)
T 2yw3_A           80 LEAGAAFLV-----SPG-LLEEVAALAQARGVPYLPGVLTPTEVERALAL-GLSALKF  130 (207)
T ss_dssp             HHHTCSEEE-----ESS-CCHHHHHHHHHHTCCEEEEECSHHHHHHHHHT-TCCEEEE
T ss_pred             HHcCCCEEE-----cCC-CCHHHHHHHHHhCCCEEecCCCHHHHHHHHHC-CCCEEEE
Confidence            999999985     332 22467899999999999999999999999996 9999999

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=97.22  E-value=0.00064  Score=65.21  Aligned_cols=127  Identities=9%  Similarity=0.069  Sum_probs=97.0

Q ss_pred             CHHHHHHHHHHcC--ceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcC
Q 018446          198 DPVEIARSYEKGG--AACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVL  272 (355)
Q Consensus       198 Dp~~iA~~Ye~~G--AaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL  272 (355)
                      +..+.++.+.+.|  +.+|.+.+-..++...+++++.+|+. ++.|++-|..+.++-+...+..+|||+|.+.-   ..+
T Consensus       106 ~~~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~-~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~  184 (336)
T 1ypf_A          106 DEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKH-LPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVC  184 (336)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHH-CTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTC
T ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHh-CCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCcee
Confidence            3456788888999  99998755222333456788999986 66566668889999999999999999998821   011


Q ss_pred             --------CHH--HHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCccccC
Q 018446          273 --------PDL--DIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETFEVD  326 (355)
Q Consensus       273 --------~~~--~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~TfevD  326 (355)
                              ...  .+..+.+.+...++..+.  -|++..|+.+|+.+ ||+.++|-..-|.|.|-.
T Consensus       185 ~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalal-GAdaV~iGr~~l~t~Es~  249 (336)
T 1ypf_A          185 ITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRF-GATMVMIGSLFAGHEESP  249 (336)
T ss_dssp             HHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHT-TCSEEEESGGGTTCTTSS
T ss_pred             ecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc-CCCEEEeChhhhccccCC
Confidence                    101  466777888888999999  89999999999997 999999999988765543

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.14  E-value=0.0012  Score=66.59  Aligned_cols=128  Identities=16%  Similarity=0.106  Sum_probs=98.8

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH------HHh
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL------IAA  270 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL------Iaa  270 (355)
                      -|..+.++.+.++||++|.+-|-..+..+..+.++.+|+...++||+..+ +.++-+...+..+|||+|.+      +..
T Consensus       228 ~~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~-v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~  306 (490)
T 4avf_A          228 ADTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGN-IATAEAAKALAEAGADAVKVGIGPGSICT  306 (490)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHTTCSEEEECSSCSTTCH
T ss_pred             cchHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEee-eCcHHHHHHHHHcCCCEEEECCCCCcCCC
Confidence            46788999999999999999988777777789999999862378999864 67888999999999999985      211


Q ss_pred             -----cCCHHH---HHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCccccC
Q 018446          271 -----VLPDLD---IRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETFEVD  326 (355)
Q Consensus       271 -----iL~~~~---L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~TfevD  326 (355)
                           -.+..+   +.++.+.++..++..+.  =|.+.+++.+|+.+ ||+.++|-..=+.|-|-.
T Consensus       307 t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~-GAd~V~vGs~~~~~~Esp  371 (490)
T 4avf_A          307 TRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVA-GAYCVMMGSMFAGTEEAP  371 (490)
T ss_dssp             HHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHH-TCSEEEECTTTTTBTTSS
T ss_pred             ccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHc-CCCeeeecHHHhcCCCCC
Confidence                 111113   34445555566888888  59999999999997 999999987766665533

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.99  E-value=0.0027  Score=63.40  Aligned_cols=118  Identities=17%  Similarity=0.229  Sum_probs=90.5

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCC-CCCeeccccccCHHHHHHHHHcCCcchHHH-------
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLI-------  268 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~~GADAVLLI-------  268 (355)
                      .+..+.+..+.++|+++|.+-+...++.+.++.+..+|+. + ++||+.+ .+.++-+...+..+|||+|.+-       
T Consensus       236 ~~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~-~p~~pvi~g-~~~t~e~a~~l~~~G~d~I~v~~~~G~~~  313 (494)
T 1vrd_A          236 PETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKAD-YPDLPVVAG-NVATPEGTEALIKAGADAVKVGVGPGSIC  313 (494)
T ss_dssp             TTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHH-CTTSCEEEE-EECSHHHHHHHHHTTCSEEEECSSCSTTC
T ss_pred             HhHHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHH-CCCceEEeC-CcCCHHHHHHHHHcCCCEEEEcCCCCccc
Confidence            4567889999999999999977655566678899999986 5 7999886 5788888899999999999761       


Q ss_pred             -----Hhc-CCH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeC
Q 018446          269 -----AAV-LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       269 -----aai-L~~-~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINN  317 (355)
                           ... .+. ..+.++.+.+...++..+.  -|++..++.+++.+ ||+.+++-.
T Consensus       314 ~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~-GAd~V~iGr  370 (494)
T 1vrd_A          314 TTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAA-GAESVMVGS  370 (494)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHT-TCSEEEESH
T ss_pred             cccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHc-CCCEEEECH
Confidence                 111 222 2234444555557898888  89999999999997 999999643

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.94  E-value=0.0027  Score=64.32  Aligned_cols=128  Identities=14%  Similarity=0.139  Sum_probs=100.0

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH------HH-
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL------IA-  269 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL------Ia-  269 (355)
                      -|..+.|+.+.++||++|.+-+-..++.+-++.++.+|+...++||+.. .+.+.-+...+..+|||+|.+      +. 
T Consensus       230 ~d~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~  308 (496)
T 4fxs_A          230 PGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGG-NVATAEGARALIEAGVSAVKVGIGPGSICT  308 (496)
T ss_dssp             SCCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEE-EECSHHHHHHHHHHTCSEEEECSSCCTTBC
T ss_pred             cchHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEEc-ccCcHHHHHHHHHhCCCEEEECCCCCcCcc
Confidence            4567889999999999999998876677778999999986337899884 467888999999999999974      11 


Q ss_pred             ----hcC--C-HHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCccccC
Q 018446          270 ----AVL--P-DLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETFEVD  326 (355)
Q Consensus       270 ----aiL--~-~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~TfevD  326 (355)
                          .-.  + ...+.++.+.++..|+-.+.  =|.+.+++.+|+.+ ||+.++|-.+=+.|.|-.
T Consensus       309 tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~-GAd~V~iGs~f~~t~Esp  373 (496)
T 4fxs_A          309 TRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAA-GASCVMVGSMFAGTEEAP  373 (496)
T ss_dssp             HHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTBTTSS
T ss_pred             cccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHc-CCCeEEecHHHhcCCCCC
Confidence                111  1 12345566666678988888  49999999999997 999999988877776644

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.93  E-value=0.0042  Score=62.43  Aligned_cols=125  Identities=10%  Similarity=0.072  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCC-CCCeeccccccCHHHHHHHHHcCCcchHHHH------
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIA------  269 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa------  269 (355)
                      .+..+.++.+.++|+++|.+.+-..+-.+.++.++.+|+. + ++||+.|+. .+.-+...+..+|||+|.+-.      
T Consensus       254 ~~~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~-~~~~pvi~~~v-~t~~~a~~l~~aGad~I~vg~~~G~~~  331 (514)
T 1jcn_A          254 EDDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQK-YPHLQVIGGNV-VTAAQAKNLIDAGVDGLRVGMGCGSIC  331 (514)
T ss_dssp             TTHHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHH-CTTCEEEEEEE-CSHHHHHHHHHHTCSEEEECSSCSCCB
T ss_pred             hhhHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHh-CCCCceEeccc-chHHHHHHHHHcCCCEEEECCCCCccc
Confidence            4567888899999999999977532222235788999986 6 899998875 678888899999999997711      


Q ss_pred             --------hcCCHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          270 --------AVLPDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       270 --------aiL~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                              .......+..+.+++...++..+.  -|.+..++.+++.+ ||+.++|-..=+.+-+
T Consensus       332 ~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~-GAd~V~iG~~~l~~~e  395 (514)
T 1jcn_A          332 ITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALAL-GASTVMMGSLLAATTE  395 (514)
T ss_dssp             TTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTSTT
T ss_pred             ccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHc-CCCeeeECHHHHcCCc
Confidence                    011133456666777888988887  89999999999997 9999999887766543

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=96.85  E-value=0.0037  Score=63.52  Aligned_cols=128  Identities=15%  Similarity=0.176  Sum_probs=100.2

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH------H--
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL------I--  268 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL------I--  268 (355)
                      .|..+.++.+.++|+++|.|-+...++.|-++.++.+|+...++||+.++. .+.-+...+..+|||+|.+      |  
T Consensus       255 ~d~~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v-~t~e~a~~~~~aGad~i~vg~g~gsi~~  333 (511)
T 3usb_A          255 ADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNV-ATAEATKALIEAGANVVKVGIGPGSICT  333 (511)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEE-CSHHHHHHHHHHTCSEEEECSSCSTTCC
T ss_pred             cchHHHHHHHHhhccceEEecccccchhhhhhHHHHHHHhCCCceEEeeee-ccHHHHHHHHHhCCCEEEECCCCccccc
Confidence            356788889999999999999988778888889999998634689999884 5788888999999999974      1  


Q ss_pred             ----Hhc-CCH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCccccC
Q 018446          269 ----AAV-LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETFEVD  326 (355)
Q Consensus       269 ----aai-L~~-~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~TfevD  326 (355)
                          ..+ .+. ..+.++.+.+..+|+..+.  -|.+..++.+|+.+ ||+.++|-..=+.|-+-.
T Consensus       334 ~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~-GA~~V~vGs~~~~~~es~  398 (511)
T 3usb_A          334 TRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAA-GAHVVMLGSMFAGVAESP  398 (511)
T ss_dssp             HHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTBTTSS
T ss_pred             cccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHh-CchhheecHHHhcCccCc
Confidence                111 221 2344556677888988777  79999999999997 999999988766666543

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=96.82  E-value=0.0015  Score=58.74  Aligned_cols=128  Identities=16%  Similarity=0.244  Sum_probs=90.2

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe---ccCCCCCC---------------C----HHHHHH
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL---TDEKYFKG---------------S----FENLEA  232 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL---TD~~fF~G---------------S----~edL~~  232 (355)
                      ++..+|+=+-...|+.      -+..+.++.++++ |+.|-+-   +||. ..|               +    ++.++.
T Consensus         3 ~~~~~~~~i~~~~~~~------~~~~~~a~~~~~~-ad~iel~~p~sdp~-~DG~~~~~~~~~al~~g~~~~~~~~~i~~   74 (248)
T 1geq_A            3 KDGSLIPYLTAGDPDK------QSTLNFLLALDEY-AGAIELGIPFSDPI-ADGKTIQESHYRALKNGFKLREAFWIVKE   74 (248)
T ss_dssp             CTTEEEEEEETTSSCH------HHHHHHHHHHGGG-BSCEEEECCCSCCT-TSCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CCccEEEEEeCCCCCH------HHHHHHHHHHHHc-CCEEEECCCCCCCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3456777776666642      1356889999999 9999988   4443 333               2    678888


Q ss_pred             HHhcCCCCCeeccccccCH-------HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC--CHHHHHH
Q 018446          233 VRSAGVKCPLLCKEFIVDA-------WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH--DEREMDR  303 (355)
Q Consensus       233 VR~a~v~lPVLrKDFIIdp-------yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH--~~eELer  303 (355)
                      +|+. +++||..... +++       ..+..+..+|||.|.+-  .++.++...+++.++++|+..++=+.  |..|.-+
T Consensus        75 i~~~-~~~pv~~~~~-~~~~~~~~~~~~~~~~~~~Gad~v~~~--~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~  150 (248)
T 1geq_A           75 FRRH-SSTPIVLMTY-YNPIYRAGVRNFLAEAKASGVDGILVV--DLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLK  150 (248)
T ss_dssp             HHTT-CCCCEEEEEC-HHHHHHHCHHHHHHHHHHHTCCEEEET--TCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHH
T ss_pred             HHhh-CCCCEEEEec-cchhhhcCHHHHHHHHHHCCCCEEEEC--CCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHH
Confidence            8885 7899775432 243       68888999999999885  45556889999999999999887764  5555555


Q ss_pred             HhccCCCe-EEEe
Q 018446          304 VLGIEGIE-LIGI  315 (355)
Q Consensus       304 Al~l~ga~-iIGI  315 (355)
                      ++.. +++ +|.+
T Consensus       151 ~~~~-~~d~~i~~  162 (248)
T 1geq_A          151 VIDD-MTTGFVYL  162 (248)
T ss_dssp             HHHH-HCSSEEEE
T ss_pred             HHHh-cCCCeEEE
Confidence            4442 344 5544

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=96.80  E-value=0.0049  Score=59.89  Aligned_cols=124  Identities=15%  Similarity=0.171  Sum_probs=89.5

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC---CCCC--CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh--
Q 018446          198 DPVEIARSYEKGGAACLSILTDE---KYFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA--  270 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~---~fF~--GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa--  270 (355)
                      +..+.++.+.+.||++|.+-..+   .|++  +.++++..+|+. +++||+.|+ |.++-+...+..+|||+|.+-..  
T Consensus       166 ~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~-~~~pvi~gg-i~t~e~a~~~~~~Gad~i~vg~Gg~  243 (393)
T 2qr6_A          166 NVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGS-LDVPVIAGG-VNDYTTALHMMRTGAVGIIVGGGEN  243 (393)
T ss_dssp             THHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHH-CSSCEEEEC-CCSHHHHHHHHTTTCSEEEESCCSC
T ss_pred             cHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHh-cCCCEEECC-cCCHHHHHHHHHcCCCEEEECCCcc
Confidence            56788999989999999774332   2443  367889999986 899999985 67888999999999999988320  


Q ss_pred             ------cCCHHHHHHHHHHHHH-------cC---CcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          271 ------VLPDLDIRYMTKICKL-------LG---LTALV--EVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       271 ------iL~~~~L~~L~~~A~~-------LG---LeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                            -.+...+..+.+.+..       +|   +..+.  -|++..++.+++.+ ||+.++|-..-+.+.+
T Consensus       244 ~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalal-GA~~V~iG~~~l~~~e  314 (393)
T 2qr6_A          244 TNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIAC-GADAVVLGSPLARAEE  314 (393)
T ss_dssp             CHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHH-TCSEEEECGGGGGSTT
T ss_pred             cccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHc-CCCEEEECHHHHcCCC
Confidence                  0112244445444443       56   66665  49999999999998 9999999888776665

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=96.70  E-value=0.011  Score=57.88  Aligned_cols=122  Identities=10%  Similarity=0.120  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHHcCceEEEEec---------c-CCCCC-CCHHHHHHHHhcCCCCCeeccc--cccCHHHHHHHHHcCCc
Q 018446          197 FDPVEIARSYEKGGAACLSILT---------D-EKYFK-GSFENLEAVRSAGVKCPLLCKE--FIVDAWQIYYARTKGAD  263 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLT---------D-~~fF~-GS~edL~~VR~a~v~lPVLrKD--FIIdpyQI~eAr~~GAD  263 (355)
                      +++..+.++.+..+|.|+-|-.         + ..-|. |..+.++.+|+. +++||+.|-  +.+++.....+..+|||
T Consensus       135 ~~~~~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~-~~vPVivK~vG~g~s~~~A~~l~~aGad  213 (368)
T 3vkj_A          135 YGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKE-LSVPIIVKESGNGISMETAKLLYSYGIK  213 (368)
T ss_dssp             CCHHHHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTT-CSSCEEEECSSSCCCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHH-cCCCEEEEeCCCCCCHHHHHHHHhCCCC
Confidence            5677666656555555555532         1 23344 789999999985 899999995  44899999999999999


Q ss_pred             chHHHHh------------c-------------C---CHHHHHHHHHHHHHcC-CcEEE--EeCCHHHHHHHhccCCCeE
Q 018446          264 AVLLIAA------------V-------------L---PDLDIRYMTKICKLLG-LTALV--EVHDEREMDRVLGIEGIEL  312 (355)
Q Consensus       264 AVLLIaa------------i-------------L---~~~~L~~L~~~A~~LG-LeaLV--EVH~~eELerAl~l~ga~i  312 (355)
                      +|.+.-.            .             +   +......+...+..++ +..+.  -|+|..++.+++.+ ||+.
T Consensus       214 ~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~l-GA~~  292 (368)
T 3vkj_A          214 NFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIAL-GADI  292 (368)
T ss_dssp             EEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHH-TCSE
T ss_pred             EEEEeCCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHc-CCCE
Confidence            9976321            0             0   1112234556666664 65555  48999999999998 9999


Q ss_pred             EEeeCCCC
Q 018446          313 IGINNRNL  320 (355)
Q Consensus       313 IGINNRdL  320 (355)
                      ++|-..-|
T Consensus       293 v~ig~~~l  300 (368)
T 3vkj_A          293 AGMALPVL  300 (368)
T ss_dssp             EEECHHHH
T ss_pred             EEEcHHHH
Confidence            99976444

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=96.61  E-value=0.0069  Score=58.80  Aligned_cols=122  Identities=11%  Similarity=0.100  Sum_probs=88.7

Q ss_pred             HHHHHHHHc--CceEEEEeccCCCCCCCHHHHHHHHhcCC-CCCeeccccccCHHHHHHHHHcCCcchHHHH--------
Q 018446          201 EIARSYEKG--GAACLSILTDEKYFKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIA--------  269 (355)
Q Consensus       201 ~iA~~Ye~~--GAaaISVLTD~~fF~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa--------  269 (355)
                      +.++...+.  |+.++++-+...+..+.+++++.+|+. . ++||+.++ +.++-+...|..+|||+|.+-.        
T Consensus       121 ~~~~~l~~~~~g~~~i~i~~~~g~~~~~~~~i~~lr~~-~~~~~vi~g~-v~t~e~A~~a~~aGaD~I~v~~g~G~~~~~  198 (351)
T 2c6q_A          121 EQLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKR-FPQHTIMAGN-VVTGEMVEELILSGADIIKVGIGPGSVCTT  198 (351)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSCTTBHHHHHHHHHHHHH-CTTSEEEEEE-ECSHHHHHHHHHTTCSEEEECSSCSTTBCH
T ss_pred             HHHHHHHhccCCCCEEEEEecCCCcHHHHHHHHHHHHh-cCCCeEEEEe-CCCHHHHHHHHHhCCCEEEECCCCCcCcCc
Confidence            455555555  899998755322222345678888886 5 79999885 6788999999999999994411        


Q ss_pred             ----h-cCCH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          270 ----A-VLPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       270 ----a-iL~~-~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                          . -.+. .-|.++.+.+...++..+.  =+.|..|+.+|+.+ ||+.++|=.+=|.+-|.
T Consensus       199 r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlal-GA~~V~vG~~fl~~~Es  261 (351)
T 2c6q_A          199 RKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGA-GADFVMLGGMLAGHSES  261 (351)
T ss_dssp             HHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTBTTS
T ss_pred             cccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHc-CCCceeccHHHhcCccC
Confidence                0 0111 2345556667778998888  89999999999998 99999999988876443

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=96.40  E-value=0.0047  Score=54.83  Aligned_cols=101  Identities=13%  Similarity=0.044  Sum_probs=70.6

Q ss_pred             HHHHHHcCceEEEEeccCCCCCCCHHH----HHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446          203 ARSYEKGGAACLSILTDEKYFKGSFEN----LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR  278 (355)
Q Consensus       203 A~~Ye~~GAaaISVLTD~~fF~GS~ed----L~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~  278 (355)
                      +....++|++.+-+  +.+.  .+.+.    ++.+++.  ..|..  .|+++. ++..+..+|||+|.|....++.+.++
T Consensus        35 ~~~~~~~G~~~v~l--r~~~--~~~~~~~~~~~~l~~~--~~~~~--~l~v~~-~~~~a~~~gad~v~l~~~~~~~~~~~  105 (221)
T 1yad_A           35 IIITIQNEVDFIHI--RERS--KSAADILKLLDLIFEG--GIDKR--KLVMNG-RVDIALFSTIHRVQLPSGSFSPKQIR  105 (221)
T ss_dssp             HHHHHGGGCSEEEE--CCTT--SCHHHHHHHHHHHHHT--TCCGG--GEEEES-CHHHHHTTTCCEEEECTTSCCHHHHH
T ss_pred             HHHHHHCCCCEEEE--ccCC--CCHHHHHHHHHHHHHh--cCcCC--eEEEeC-hHHHHHHcCCCEEEeCCCccCHHHHH
Confidence            44556789997643  3332  34443    3344442  23422  677774 67889999999999987766655554


Q ss_pred             HHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          279 YMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       279 ~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR  318 (355)
                      .+.    . |+..-+.|||.+|+.++... |++.|++.+-
T Consensus       106 ~~~----~-~~~ig~sv~t~~~~~~a~~~-gaD~i~~~~~  139 (221)
T 1yad_A          106 ARF----P-HLHIGRSVHSLEEAVQAEKE-DADYVLFGHV  139 (221)
T ss_dssp             HHC----T-TCEEEEEECSHHHHHHHHHT-TCSEEEEECC
T ss_pred             HHC----C-CCEEEEEcCCHHHHHHHHhC-CCCEEEECCc
Confidence            432    2 89999999999999999986 9999999874

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.37  E-value=0.0099  Score=59.06  Aligned_cols=122  Identities=19%  Similarity=0.164  Sum_probs=93.1

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCC-CCCeeccccccCHHHHHHHHHcCCcchHHH--------
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLI--------  268 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~~GADAVLLI--------  268 (355)
                      +..+.|+.+.++|+++|.+-+-..+|.+.++.+..+++. + ++|++.+ .+.+.-....+..+|||+|.+-        
T Consensus       233 ~~~~~a~~l~~~G~d~ivi~~a~g~~~~~~~~i~~l~~~-~p~~pvi~G-~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~  310 (491)
T 1zfj_A          233 DTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAH-FPNRTLIAG-NIATAEGARALYDAGVDVVKVGIGPGSICT  310 (491)
T ss_dssp             THHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHH-CSSSCEEEE-EECSHHHHHHHHHTTCSEEEECSSCCTTBC
T ss_pred             hHHHHHHHHHHcCCCeEEEeeecCcchhHHHHHHHHHHH-CCCCcEeCC-CccCHHHHHHHHHcCCCEEEECccCCcceE
Confidence            456788999999999999888666777777888899886 5 8999965 5567888889999999998431        


Q ss_pred             ---Hh---cCCHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCc
Q 018446          269 ---AA---VLPDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLET  322 (355)
Q Consensus       269 ---aa---iL~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~T  322 (355)
                         ..   .-..+.+.++...+...++..+.  -|++..++.+|+.+ ||+.+++-..=+.+
T Consensus       311 tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~-GA~~v~vG~~~~~~  371 (491)
T 1zfj_A          311 TRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAA-GGNAVMLGSMFAGT  371 (491)
T ss_dssp             HHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTB
T ss_pred             EeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHc-CCcceeeCHHhhCC
Confidence               10   11123455566666678888887  68999999999997 99999996555443

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=96.35  E-value=0.0085  Score=53.71  Aligned_cols=92  Identities=18%  Similarity=0.071  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHcCceEEEEe---ccCCCCCCCHHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhcC
Q 018446          197 FDPVEIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVL---TD~~fF~GS~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaaiL  272 (355)
                      .++.+.++.+++.||..|-+.   .|..+++=+++.++.+++. +++||+.- +.|. +-++.+....|||+|+..-+++
T Consensus       152 ~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~-~~ipvia~-GGI~~~~d~~~~~~~Gadgv~vgsal~  229 (252)
T 1ka9_F          152 LHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEA-VGVPVIAS-GGAGRMEHFLEAFQAGAEAALAASVFH  229 (252)
T ss_dssp             EEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHH-CSSCEEEE-SCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             CcHHHHHHHHHHcCCCEEEEecccCCCCcCCCCHHHHHHHHHH-cCCCEEEe-CCCCCHHHHHHHHHCCCHHHHHHHHHH
Confidence            467899999999999988775   2444554479999999986 89999986 5555 7999999999999999988888


Q ss_pred             CHH-HHHHHHHHHHHcCCc
Q 018446          273 PDL-DIRYMTKICKLLGLT  290 (355)
Q Consensus       273 ~~~-~L~~L~~~A~~LGLe  290 (355)
                      ... .++++.+++.+-|+.
T Consensus       230 ~~~~~~~~~~~~l~~~~~~  248 (252)
T 1ka9_F          230 FGEIPIPKLKRYLAEKGVH  248 (252)
T ss_dssp             TTSSCHHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHHHHHHHCCCC
Confidence            765 788888888888874

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=96.32  E-value=0.014  Score=51.36  Aligned_cols=123  Identities=15%  Similarity=0.157  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      +.+.++...++|+++|-+- ++..-...+    +.+..+++.  ...+||+-.|+      +..|..+|||.|.|  ...
T Consensus        33 ~~~~~~~~~~~G~~~i~l~-~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~~~------~~~a~~~gad~v~l--~~~  103 (227)
T 2tps_A           33 PVTVVQKALKGGATLYQFR-EKGGDALTGEARIKFAEKAQAACREAGVPFIVNDD------VELALNLKADGIHI--GQE  103 (227)
T ss_dssp             HHHHHHHHHHHTCSEEEEC-CCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEESC------HHHHHHHTCSEEEE--CTT
T ss_pred             HHHHHHHHHHCCCCEEEEe-cCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEcCH------HHHHHHcCCCEEEE--CCC
Confidence            8899999999999998654 322111222    333333321  13578877654      46788999999976  222


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEe---eCCCCC---ccccChhhHHhhhcc
Q 018446          273 PDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGI---NNRNLE---TFEVDNSNTKKLLEG  336 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGI---NNRdL~---TfevDl~~t~~L~~~  336 (355)
                      +. .   +.++++.+|. .++.  +||.+|+.++... |++.|.+   ....-+   ....+++...++...
T Consensus       104 ~~-~---~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~-g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~  169 (227)
T 2tps_A          104 DA-N---AKEVRAAIGD-MILGVSAHTMSEVKQAEED-GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ  169 (227)
T ss_dssp             SS-C---HHHHHHHHTT-SEEEEEECSHHHHHHHHHH-TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT
T ss_pred             cc-C---HHHHHHhcCC-cEEEEecCCHHHHHHHHhC-CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHh
Confidence            22 1   3455566786 5555  5999999998886 9999986   222111   123455666666543

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=96.31  E-value=0.0049  Score=53.83  Aligned_cols=109  Identities=17%  Similarity=0.190  Sum_probs=78.5

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCC-CCCeec--cccccC-HHH-HHHHHHcCCcchHHHHhcCCH
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV-KCPLLC--KEFIVD-AWQ-IYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v-~lPVLr--KDFIId-pyQ-I~eAr~~GADAVLLIaaiL~~  274 (355)
                      .++++.... |+.+|=| +++.|....++.++.+|+. . +.|++.  |  +.| +.+ +..+..+|||.|.+-.. -++
T Consensus        16 ~~~~~~~~~-~v~~iev-~~~~~~~~g~~~i~~l~~~-~~~~~i~~~l~--~~di~~~~~~~a~~~Gad~v~vh~~-~~~   89 (207)
T 3ajx_A           16 LELAGKVAE-YVDIIEL-GTPLIKAEGLSVITAVKKA-HPDKIVFADMK--TMDAGELEADIAFKAGADLVTVLGS-ADD   89 (207)
T ss_dssp             HHHHHHHGG-GCSEEEE-CHHHHHHHCTHHHHHHHHH-STTSEEEEEEE--ECSCHHHHHHHHHHTTCSEEEEETT-SCH
T ss_pred             HHHHHHhhc-cCCEEEE-CcHHHHhhCHHHHHHHHHh-CCCCeEEEEEE--ecCccHHHHHHHHhCCCCEEEEecc-CCh
Confidence            345555555 7788888 5555555667889999985 4 788774  4  335 444 88899999999875433 234


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeC---CHHH-HHHHhccCCCeEEEe
Q 018446          275 LDIRYMTKICKLLGLTALVEVH---DERE-MDRVLGIEGIELIGI  315 (355)
Q Consensus       275 ~~L~~L~~~A~~LGLeaLVEVH---~~eE-LerAl~l~ga~iIGI  315 (355)
                      +.+..+.+.+++.|+..-|.+|   |.+| ++.+... |++.|++
T Consensus        90 ~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~-g~d~v~~  133 (207)
T 3ajx_A           90 STIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRAL-GAKFVEM  133 (207)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHT-TCSEEEE
T ss_pred             HHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHh-CCCEEEE
Confidence            6788999999999999778887   6666 5565554 7888854

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=96.28  E-value=0.013  Score=57.64  Aligned_cols=125  Identities=15%  Similarity=0.181  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH------HH--h
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL------IA--A  270 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL------Ia--a  270 (355)
                      -.+.++...++|++.|.|-|-..+..+-.+.++.+|+...++||+.. .+.++-+...+..+|||+|.+      +.  .
T Consensus       109 ~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G-~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr  187 (366)
T 4fo4_A          109 NEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGG-NVATAEGARALIEAGVSAVKVGIGPGSICTTR  187 (366)
T ss_dssp             CHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEE-EECSHHHHHHHHHHTCSEEEECSSCSTTBCHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEee-eeCCHHHHHHHHHcCCCEEEEecCCCCCCCcc
Confidence            45778888999999999877433333334557778875337888875 467889999999999999987      10  0


Q ss_pred             ----c-CCH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          271 ----V-LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       271 ----i-L~~-~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                          . .+. ..+.++.+.++..++-.+.  =+.+..++.+|+.+ ||+.+++-.+=+.|-|-
T Consensus       188 ~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~-GAd~V~vGs~f~~t~Es  249 (366)
T 4fo4_A          188 IVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAA-GASCVMVGSMFAGTEEA  249 (366)
T ss_dssp             HHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTBTTS
T ss_pred             cccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEChHhhcCCCC
Confidence                1 121 2344455555678988888  79999999999997 99999998887776653

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=96.27  E-value=0.017  Score=56.35  Aligned_cols=122  Identities=15%  Similarity=0.223  Sum_probs=89.1

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH--------Hh-
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI--------AA-  270 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI--------aa-  270 (355)
                      .+.++.+.++||+.|.|.+-.....+-.+.++.+|+. .++||+.+. +.++-+...+..+|||+|.+-        .. 
T Consensus       107 ~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~-~~~~Vivg~-v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~  184 (361)
T 3khj_A          107 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK-MNIDVIVGN-VVTEEATKELIENGADGIKVGIGPGSICTTRI  184 (361)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHH-CCCEEEEEE-ECSHHHHHHHHHTTCSEEEECSSCCTTCCHHH
T ss_pred             HHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHh-cCCcEEEcc-CCCHHHHHHHHHcCcCEEEEecCCCcCCCccc
Confidence            6788999999999998866532222224677778875 589999865 578889999999999999861        01 


Q ss_pred             ---c-CCH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          271 ---V-LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       271 ---i-L~~-~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                         . .+. ..+.++.+.++..++-.+.  =|+|.+++.+++.+ ||+.+++-..=+.|-|
T Consensus       185 ~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~-GAd~V~vGs~~~~t~E  244 (361)
T 3khj_A          185 VAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAV-GASSVMIGSILAGTEE  244 (361)
T ss_dssp             HTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHH-TCSEEEESTTTTTBTT
T ss_pred             ccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHc-CCCEEEEChhhhcCCc
Confidence               1 221 2344555556778887777  48999999999997 9999998777666544

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=96.22  E-value=0.013  Score=57.11  Aligned_cols=118  Identities=16%  Similarity=0.159  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCC-CCCeeccccccCHHHHHHHHHcCCcchHH------H--
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLL------I--  268 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~~GADAVLL------I--  268 (355)
                      +-.+.++...++|+++|.+.+-..+-....+.+..+|+. + ++||+.+ .+.++-+...+..+|||+|.+      +  
T Consensus       153 ~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~-~~~~pviv~-~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~  230 (404)
T 1eep_A          153 DTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTK-YPNLDLIAG-NIVTKEAALDLISVGADCLKVGIGPGSICT  230 (404)
T ss_dssp             THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHH-CTTCEEEEE-EECSHHHHHHHHTTTCSEEEECSSCSTTSH
T ss_pred             hHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHH-CCCCeEEEc-CCCcHHHHHHHHhcCCCEEEECCCCCcCcC
Confidence            345677788889999999843211111136677888885 5 7999875 456788888899999999977      1  


Q ss_pred             ---HhcCCHHHH---HHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          269 ---AAVLPDLDI---RYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       269 ---aaiL~~~~L---~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNR  318 (355)
                         ..-.+..++   ..+.+.+...++..+.  -|+|.+++.+++.+ ||+.++|-..
T Consensus       231 ~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~-GAd~V~iG~~  287 (404)
T 1eep_A          231 TRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAA-GADSVMIGNL  287 (404)
T ss_dssp             HHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHH-TCSEEEECHH
T ss_pred             ccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHc-CCCHHhhCHH
Confidence               111221133   3333444456777777  69999999999997 9999999433

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=96.22  E-value=0.03  Score=54.88  Aligned_cols=95  Identities=13%  Similarity=0.247  Sum_probs=72.9

Q ss_pred             CCCCC--CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cC--CHHHHHHHHHHHHHc--CCcE
Q 018446          221 KYFKG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLL--GLTA  291 (355)
Q Consensus       221 ~fF~G--S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL--~~~~L~~L~~~A~~L--GLea  291 (355)
                      .+|.+  ++++++.+|+. +++||+.|.. .++-....|..+|||+|.+.-.   .+  ....+..|.+++..+  .+..
T Consensus       198 ~~~d~~~~w~~i~~lr~~-~~~PvivK~v-~~~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipV  275 (352)
T 3sgz_A          198 LFPKASFCWNDLSLLQSI-TRLPIILKGI-LTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEV  275 (352)
T ss_dssp             -CCCTTCCHHHHHHHHHH-CCSCEEEEEE-CSHHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEE
T ss_pred             hccCCCCCHHHHHHHHHh-cCCCEEEEec-CcHHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeE
Confidence            34554  47999999996 8999999986 6788888999999999986221   11  123556666776767  5777


Q ss_pred             EEE--eCCHHHHHHHhccCCCeEEEeeCC
Q 018446          292 LVE--VHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       292 LVE--VH~~eELerAl~l~ga~iIGINNR  318 (355)
                      +..  |++.+++.+++.+ ||+.++|-..
T Consensus       276 ia~GGI~~g~Dv~kaLal-GA~aV~iGr~  303 (352)
T 3sgz_A          276 YMDGGVRTGTDVLKALAL-GARCIFLGRP  303 (352)
T ss_dssp             EEESSCCSHHHHHHHHHT-TCSEEEESHH
T ss_pred             EEECCCCCHHHHHHHHHc-CCCEEEECHH
Confidence            776  8999999999997 9999998653

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=96.20  E-value=0.008  Score=59.07  Aligned_cols=153  Identities=14%  Similarity=0.140  Sum_probs=102.8

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccC----------CCCCCCHHHHHHHHhcCCCCCeecccc--ccCHHHHHHHHHcCCcc
Q 018446          197 FDPVEIARSYEKGGAACLSILTDE----------KYFKGSFENLEAVRSAGVKCPLLCKEF--IVDAWQIYYARTKGADA  264 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~----------~fF~GS~edL~~VR~a~v~lPVLrKDF--IIdpyQI~eAr~~GADA  264 (355)
                      ....+..+..+..||+||.+-.+.          .-|.+-+++++.+|+. +++||+.|..  ..++.....+..+|||+
T Consensus       155 ~~~e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~-~~~PVivK~vg~g~s~e~A~~l~~aGad~  233 (365)
T 3sr7_A          155 KPYQAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKK-LQLPFILKEVGFGMDVKTIQTAIDLGVKT  233 (365)
T ss_dssp             SCHHHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHH-CCSCEEEEECSSCCCHHHHHHHHHHTCCE
T ss_pred             CCHHHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHh-hCCCEEEEECCCCCCHHHHHHHHHcCCCE
Confidence            345678888889999999988764          2244545889999986 8999999952  27899999999999999


Q ss_pred             hHHHHh-----------------cC---CHHHHHHHHHHHHHc--CCcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446          265 VLLIAA-----------------VL---PDLDIRYMTKICKLL--GLTALVE--VHDEREMDRVLGIEGIELIGINNRNL  320 (355)
Q Consensus       265 VLLIaa-----------------iL---~~~~L~~L~~~A~~L--GLeaLVE--VH~~eELerAl~l~ga~iIGINNRdL  320 (355)
                      |.+.-.                 .+   +...+..|. .+..+  .+..+..  |+|..|+-+++.+ ||+.++|-..-|
T Consensus       234 I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~-~v~~~~~~ipvia~GGI~~g~Dv~KaLal-GAdaV~ig~~~l  311 (365)
T 3sr7_A          234 VDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLL-NAQPLMDKVEILASGGIRHPLDIIKALVL-GAKAVGLSRTML  311 (365)
T ss_dssp             EECCCBC--------------CGGGTTCSCBHHHHHH-HHGGGTTTSEEEECSSCCSHHHHHHHHHH-TCSEEEESHHHH
T ss_pred             EEEeCCCCcccchhhccccccccccccccccHHHHHH-HHHHhcCCCeEEEeCCCCCHHHHHHHHHc-CCCEEEECHHHH
Confidence            976311                 00   111222333 34455  4555554  8999999999998 999999965433


Q ss_pred             ---------------CccccChhhHHhhhccccccccccCceEEecc
Q 018446          321 ---------------ETFEVDNSNTKKLLEGERGEIIRQKNIIVSGP  352 (355)
Q Consensus       321 ---------------~TfevDl~~t~~L~~~~~~~~l~~~~i~~V~~  352 (355)
                                     ..+.-++..+..+...-.-..|+...+++-|+
T Consensus       312 ~a~~~~G~~~v~~~l~~l~~eL~~~m~~~G~~si~eL~~~~~~~~~~  358 (365)
T 3sr7_A          312 ELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQTIAELRNVDYLLYGR  358 (365)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCSSTGGGGGCCEEECHH
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHhCCcCHHHhccCCEEEccc
Confidence                           23334445555555443445666666555554

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=96.16  E-value=0.012  Score=52.69  Aligned_cols=93  Identities=20%  Similarity=0.125  Sum_probs=74.3

Q ss_pred             CCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhcC
Q 018446          197 FDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaaiL  272 (355)
                      .++.+.++.+++.|+..|-+.+   |..+++=+++.+..+++. +++||+.- ..|. +-++.+...+|||+|+..-+++
T Consensus       151 ~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~-~~ipvia~-GGI~~~~d~~~~~~~Gadgv~vGsal~  228 (253)
T 1thf_D          151 ILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPL-TTLPIIAS-GGAGKMEHFLEAFLAGADAALAASVFH  228 (253)
T ss_dssp             EEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGG-CCSCEEEE-SCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             CCHHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHHh-cCCCEEEE-CCCCCHHHHHHHHHcCChHHHHHHHHH
Confidence            3688999999999999888753   223333468999999986 79999884 6666 6999999999999999988888


Q ss_pred             CHH-HHHHHHHHHHHcCCcE
Q 018446          273 PDL-DIRYMTKICKLLGLTA  291 (355)
Q Consensus       273 ~~~-~L~~L~~~A~~LGLea  291 (355)
                      ... ++++..++.++.|+.+
T Consensus       229 ~~~~~~~~~~~~l~~~g~~~  248 (253)
T 1thf_D          229 FREIDVRELKEYLKKHGVNV  248 (253)
T ss_dssp             TTCSCHHHHHHHHHHTTCCC
T ss_pred             cCCCCHHHHHHHHHHcCCcc
Confidence            765 7888888888888753

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=96.05  E-value=0.011  Score=53.51  Aligned_cols=91  Identities=21%  Similarity=0.123  Sum_probs=60.9

Q ss_pred             CCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhcC
Q 018446          197 FDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaaiL  272 (355)
                      .++.+.++.+++.|+..|-+..   |..+++=+++.++.+++. +++||+.- +.|. +-++.+...+|||+|++.-+++
T Consensus       156 ~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~-~~ipvia~-GGI~~~ed~~~~~~~Gadgv~vgsal~  233 (266)
T 2w6r_A          156 ILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPL-TTLPIIAS-GGAGKMEHFLEAFLAGADAALAASVFH  233 (266)
T ss_dssp             EEHHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHGGG-CCSCEEEE-SCCCSHHHHHHHHHHTCSEEEESTTTC
T ss_pred             hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHH-cCCCEEEe-CCCCCHHHHHHHHHcCCHHHHccHHHH
Confidence            3688999999999999998732   344555578999999986 89999886 5555 7999999999999999998888


Q ss_pred             CHH-HHHHHHHHHHHcCC
Q 018446          273 PDL-DIRYMTKICKLLGL  289 (355)
Q Consensus       273 ~~~-~L~~L~~~A~~LGL  289 (355)
                      ... .++++.++..+.|+
T Consensus       234 ~~~~~~~~~~~~l~~~g~  251 (266)
T 2w6r_A          234 FREIDMRELKEYLKKHGV  251 (266)
T ss_dssp             ------------------
T ss_pred             cCCCCHHHHHHHHHHCCC
Confidence            765 67777777766665

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=96.04  E-value=0.028  Score=54.85  Aligned_cols=92  Identities=14%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcC--CHHHHHHHHHHHHHc--CCcEEEE--
Q 018446          224 KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVL--PDLDIRYMTKICKLL--GLTALVE--  294 (355)
Q Consensus       224 ~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL--~~~~L~~L~~~A~~L--GLeaLVE--  294 (355)
                      ..++++++.+|+. +++||+-|.. .++-....+..+|||+|.+.-   ..+  ....+..+.++...+  ++..+..  
T Consensus       215 ~~~~~~i~~lr~~-~~~PvivK~v-~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GG  292 (368)
T 2nli_A          215 KISPRDIEEIAGH-SGLPVFVKGI-QHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSG  292 (368)
T ss_dssp             BCCHHHHHHHHHH-SSSCEEEEEE-CSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSS
T ss_pred             hhhHHHHHHHHHH-cCCCEEEEcC-CCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECC
Confidence            3578999999996 8999999974 778888889999999998732   122  123556666666666  4777764  


Q ss_pred             eCCHHHHHHHhccCCCeEEEeeCC
Q 018446          295 VHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       295 VH~~eELerAl~l~ga~iIGINNR  318 (355)
                      |++.+++.+++.+ ||+.++|-.-
T Consensus       293 I~~g~D~~kalal-GAd~V~iGr~  315 (368)
T 2nli_A          293 VRRGEHVAKALAS-GADVVALGRP  315 (368)
T ss_dssp             CCSHHHHHHHHHT-TCSEEEECHH
T ss_pred             CCCHHHHHHHHHc-CCCEEEECHH
Confidence            8999999999997 9999999653

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=95.92  E-value=0.018  Score=50.62  Aligned_cols=93  Identities=25%  Similarity=0.283  Sum_probs=72.5

Q ss_pred             CCHHHHHHHHHHcCceEEEEec-cCCCC-CC-CHHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhcC
Q 018446          197 FDPVEIARSYEKGGAACLSILT-DEKYF-KG-SFENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLT-D~~fF-~G-S~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaaiL  272 (355)
                      .++.+.++.+.+.||+.|-+.. ++... +| +++.+..+++. +++||+. +..|. +-++.+...+|||+|++--+++
T Consensus       154 ~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~-~~~pvia-~GGi~~~~~~~~~~~~Ga~~v~vgsal~  231 (253)
T 1h5y_A          154 LDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADS-VRIPVIA-SGGAGRVEHFYEAAAAGADAVLAASLFH  231 (253)
T ss_dssp             EEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHH-CSSCEEE-ESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             CCHHHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHh-cCCCEEE-eCCCCCHHHHHHHHHcCCcHHHHHHHHH
Confidence            4788999999999999998753 22111 11 57889999986 7899886 57776 6899999999999999888877


Q ss_pred             CHH-HHHHHHHHHHHcCCcE
Q 018446          273 PDL-DIRYMTKICKLLGLTA  291 (355)
Q Consensus       273 ~~~-~L~~L~~~A~~LGLea  291 (355)
                      ... .++++.++..+.|+.+
T Consensus       232 ~~~~~~~~~~~~l~~~g~~~  251 (253)
T 1h5y_A          232 FRVLSIAQVKRYLKERGVEV  251 (253)
T ss_dssp             TTSSCHHHHHHHHHHTTCBC
T ss_pred             cCCCCHHHHHHHHHHcCCCC
Confidence            543 5788888888888763

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=95.90  E-value=0.018  Score=57.32  Aligned_cols=124  Identities=14%  Similarity=0.206  Sum_probs=88.0

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH------H--hc
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI------A--AV  271 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI------a--ai  271 (355)
                      .+.++.+.++|++.|++-|-..+-.+-.+.++.+|+. .++||+.+.. .++-+...+..+|||+|.+-      .  ..
T Consensus       146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~-~~i~Vi~g~V-~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~  223 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK-MNIDVIVGNV-VTEEATKELIENGADGIKVGIGPGSICTTRI  223 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTT-CCCEEEEEEE-CSHHHHHHHHHTTCSEEEECC---------C
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhc-CCCeEEEeec-CCHHHHHHHHHcCCCEEEEeCCCCcCccccc
Confidence            5789999999999998755421111115777888875 5899998754 67889999999999999871      1  11


Q ss_pred             -----CCH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCccccC
Q 018446          272 -----LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETFEVD  326 (355)
Q Consensus       272 -----L~~-~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~TfevD  326 (355)
                           .+. ..+.++.+.++..++-.+.  -|+|.+++.+++.+ ||+.++|-.+=+.|-|-.
T Consensus       224 ~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalal-GAd~V~vGt~f~~t~Es~  285 (400)
T 3ffs_A          224 VAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAV-GASSVMIGSILAGTEESP  285 (400)
T ss_dssp             CSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTT-TCSEEEECGGGTTBTTSS
T ss_pred             ccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHc-CCCEEEEChHHhcCCCCC
Confidence                 111 1234444445557888877  49999999999997 999999877766665543

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=95.80  E-value=0.026  Score=52.57  Aligned_cols=119  Identities=13%  Similarity=0.116  Sum_probs=77.4

Q ss_pred             CHHHHHHHHHHcCce-EEEEecc------CCCCCCCHHH----HHHHHhcCCCCCeecc---ccccCHHHH----HHHHH
Q 018446          198 DPVEIARSYEKGGAA-CLSILTD------EKYFKGSFEN----LEAVRSAGVKCPLLCK---EFIVDAWQI----YYART  259 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAa-aISVLTD------~~fF~GS~ed----L~~VR~a~v~lPVLrK---DFIIdpyQI----~eAr~  259 (355)
                      +..+.|+..+++|++ +|-+.--      ...|+|+++.    ++.+|++ +++||+.|   |+  +..++    ..+..
T Consensus       107 ~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~-~~~Pv~vKi~~~~--~~~~~~~~a~~~~~  183 (311)
T 1jub_A          107 ENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTF-FTKPLGVKLPPYF--DLVHFDIMAEILNQ  183 (311)
T ss_dssp             HHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTT-CCSCEEEEECCCC--SHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHh-cCCCEEEEECCCC--CHHHHHHHHHHHHH
Confidence            455677777888999 8888432      1235667754    5566664 68999877   53  65564    34455


Q ss_pred             cCCcchHHHHhc-----C-------------------C----HHHHHHHHHHHHHc--CCcEEE--EeCCHHHHHHHhcc
Q 018446          260 KGADAVLLIAAV-----L-------------------P----DLDIRYMTKICKLL--GLTALV--EVHDEREMDRVLGI  307 (355)
Q Consensus       260 ~GADAVLLIaai-----L-------------------~----~~~L~~L~~~A~~L--GLeaLV--EVH~~eELerAl~l  307 (355)
                      +|+|+|.+.-..     +                   +    +..+..+.++.+.+  ++..+.  -|+|.+++.+++.+
T Consensus       184 ~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~  263 (311)
T 1jub_A          184 FPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLC  263 (311)
T ss_dssp             SCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHH
T ss_pred             cCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHc
Confidence            699998775432     1                   1    12344555555556  454444  36899999999986


Q ss_pred             CCCeEEEeeCCCC
Q 018446          308 EGIELIGINNRNL  320 (355)
Q Consensus       308 ~ga~iIGINNRdL  320 (355)
                       ||+.|+|-..-+
T Consensus       264 -GAd~V~vg~~~l  275 (311)
T 1jub_A          264 -GATMLQIGTALH  275 (311)
T ss_dssp             -TCSEEEECHHHH
T ss_pred             -CCCEEEEchHHH
Confidence             999999865433

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=95.76  E-value=0.018  Score=56.56  Aligned_cols=123  Identities=12%  Similarity=0.112  Sum_probs=87.2

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---c---
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---V---  271 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---i---  271 (355)
                      +-.+.++...++|+++|-|-|-..+..+-.+.++.+|++..++||+.|. +.++-+...+..+|||+|.+-..   .   
T Consensus       100 ~~~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~-V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~t  178 (361)
T 3r2g_A          100 NELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGN-VATYAGADYLASCGADIIKAGIGGGSVCST  178 (361)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEE-ECSHHHHHHHHHTTCSEEEECCSSSSCHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcC-cCCHHHHHHHHHcCCCEEEEcCCCCcCccc
Confidence            3467888999999998887654333222246888888752378999986 57888999999999999986110   0   


Q ss_pred             -----CCHHHHHHHHHHHHHcCCcEEE---EeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          272 -----LPDLDIRYMTKICKLLGLTALV---EVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       272 -----L~~~~L~~L~~~A~~LGLeaLV---EVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                           .+..++..+.+.+....  +++   -|.+..++.+|+.+ ||+.|+|-.+=+.|-|
T Consensus       179 r~~~g~g~p~l~aI~~~~~~~~--PVIAdGGI~~~~di~kALa~-GAd~V~iGr~f~~t~E  236 (361)
T 3r2g_A          179 RIKTGFGVPMLTCIQDCSRADR--SIVADGGIKTSGDIVKALAF-GADFVMIGGMLAGSAP  236 (361)
T ss_dssp             HHHHCCCCCHHHHHHHHTTSSS--EEEEESCCCSHHHHHHHHHT-TCSEEEESGGGTTBTT
T ss_pred             cccCCccHHHHHHHHHHHHhCC--CEEEECCCCCHHHHHHHHHc-CCCEEEEChHHhCCcc
Confidence                 01115555555555444  666   58999999999997 9999999766555543

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=95.69  E-value=0.025  Score=52.57  Aligned_cols=134  Identities=13%  Similarity=-0.020  Sum_probs=79.2

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCC-C-CCCHHHHH-HHHhcCCCCCeeccccccCHH--
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKY-F-KGSFENLE-AVRSAGVKCPLLCKEFIVDAW--  252 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~f-F-~GS~edL~-~VR~a~v~lPVLrKDFIIdpy--  252 (355)
                      -.|+-++-.||-----..+-|+....+.++++||++|.|-. +.. . +.+.+++- .+++  ...|++-........  
T Consensus         4 ~~i~~~~~~~~~~~~t~g~p~~~~~~~~l~~~Gad~ielg~-pr~~~~g~~~~~~~~~l~~--~~~~~~pn~~~~~~~~~   80 (264)
T 1xm3_A            4 LTIGGKSFQSRLLLGTGKYPSFDIQKEAVAVSESDILTFAV-RRMNIFEASQPNFLEQLDL--SKYTLLPNTAGASTAEE   80 (264)
T ss_dssp             EEETTEEESCCEEEECSCSSCHHHHHHHHHHHTCSEEEEET-TSSTTC-------CTTCCG--GGSEEEEECTTCSSHHH
T ss_pred             eEECCEEecCCCEEEecCCCCHHHHHHHHHHcCCeEEEEcc-cccccCCCCHHHHHHHHHh--cCCeEcCCccccCCHHH
Confidence            45777777888210011245788889999999999997654 321 1 22333332 2222  345555554432222  


Q ss_pred             ---HHHHHHHc-CCcchHH-HHhcCC--HHHHHHHHHHHHHc---CCcEE-EEeCCHHHHHHHhccCCCeEEEe
Q 018446          253 ---QIYYARTK-GADAVLL-IAAVLP--DLDIRYMTKICKLL---GLTAL-VEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       253 ---QI~eAr~~-GADAVLL-IaaiL~--~~~L~~L~~~A~~L---GLeaL-VEVH~~eELerAl~l~ga~iIGI  315 (355)
                         -...++.+ |++.|.| +..-++  .+++.++++.|+++   |+.++ +++||.++++++.+. |++.|+.
T Consensus        81 ~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~-gad~v~~  153 (264)
T 1xm3_A           81 AVRIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEEL-GVHAIMP  153 (264)
T ss_dssp             HHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHH-TCSCBEE
T ss_pred             HHHHHHHHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHh-CCCEEEE
Confidence               22335555 4454332 222121  24678999999999   99999 899999999999886 8887643

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=95.66  E-value=0.02  Score=51.04  Aligned_cols=117  Identities=17%  Similarity=0.188  Sum_probs=80.4

Q ss_pred             CHHHHHHHHHHcCceEEEEe-ccCCCCC---CCHHHHHHHHhcCCCCCeeccccccCH-HHHHHHHHcCCcchHHHHhcC
Q 018446          198 DPVEIARSYEKGGAACLSIL-TDEKYFK---GSFENLEAVRSAGVKCPLLCKEFIVDA-WQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL-TD~~fF~---GS~edL~~VR~a~v~lPVLrKDFIIdp-yQI~eAr~~GADAVLLIaaiL  272 (355)
                      +..+.++...++|+++|=+- -|..|++   ..++.++.+|+. ++.|+...=++-|+ ..+..+..+|||.|.+-....
T Consensus        24 ~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~-~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~  102 (230)
T 1rpx_A           24 KLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPI-TDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQS  102 (230)
T ss_dssp             GHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGG-CCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTT
T ss_pred             HHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhc-cCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCc
Confidence            45677888889999998774 2544533   348899999875 56675443344444 478899999999986654311


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEe--CCHHHHHHHhccCCCeEE---Eee
Q 018446          273 PDLDIRYMTKICKLLGLTALVEV--HDEREMDRVLGIEGIELI---GIN  316 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLVEV--H~~eELerAl~l~ga~iI---GIN  316 (355)
                      +.+.+.++++.+++.|+...+-+  ++..|.-++.. .+++.|   +++
T Consensus       103 ~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~-~~~d~vl~~~~~  150 (230)
T 1rpx_A          103 STIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVL-DAVDLVLIMSVN  150 (230)
T ss_dssp             TCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTT-TTCSEEEEESSC
T ss_pred             cchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-hhCCEEEEEEEc
Confidence            33466788899999999999999  44444444443 378888   554

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=95.64  E-value=0.023  Score=57.32  Aligned_cols=125  Identities=14%  Similarity=0.053  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCC-CCeeccccccCHHHHHHHHHcCCcchHHHH------
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIA------  269 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~~GADAVLLIa------  269 (355)
                      .+..+.++...+.|+.++.|-+...+-.|..+.+..+++...+ +||+.++ +.+.-+...+..+|||+|.+=.      
T Consensus       241 ~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G~-V~t~~~a~~l~~aGad~I~Vg~~~g~~~  319 (503)
T 1me8_A          241 RDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGN-IVDGEGFRYLADAGADFIKIGIGGGSIC  319 (503)
T ss_dssp             SSHHHHHHHHHHHTCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEEE-ECSHHHHHHHHHHTCSEEEECSSCSTTC
T ss_pred             hhHHHHHHHHHhhhccceEEecccCcccchhhHHHHHHHhCCCCceEeecc-ccCHHHHHHHHHhCCCeEEecccCCcCc
Confidence            4566778888888999999977766667778888888875225 8998765 6678888889999999985521      


Q ss_pred             --hc-----CCH-HHHHHHHHHHHHc------CCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCcc
Q 018446          270 --AV-----LPD-LDIRYMTKICKLL------GLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETF  323 (355)
Q Consensus       270 --ai-----L~~-~~L~~L~~~A~~L------GLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~Tf  323 (355)
                        ..     .+. .-+.+..+.+..+      ++..+.  -+++..|+-+|+.+ ||+.++|-.+=+.|-
T Consensus       320 ~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlal-GA~~V~iG~~~~~~~  388 (503)
T 1me8_A          320 ITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAM-GADFIMLGRYFARFE  388 (503)
T ss_dssp             CSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHT-TCSEEEESHHHHTBT
T ss_pred             ccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHc-CCCEEEECchhhccc
Confidence              11     121 2344555566666      888888  79999999999998 999999988766553

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=95.56  E-value=0.034  Score=52.93  Aligned_cols=74  Identities=26%  Similarity=0.205  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCC---CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~---GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      || .+|+.+++.|++++-.+..+---+   -+++.|+.+++. .++||++.==|-+|-|..+|..+|||+|++--+|..
T Consensus       145 d~-~~akrl~~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~-~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~  221 (265)
T 1wv2_A          145 DP-IIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAH  221 (265)
T ss_dssp             CH-HHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred             CH-HHHHHHHHhCCCEEEeCCccCCCCCCcCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence            45 599999999999997777753222   268999999985 899999977888999999999999999999888765

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=95.53  E-value=0.11  Score=46.64  Aligned_cols=120  Identities=17%  Similarity=0.153  Sum_probs=81.7

Q ss_pred             CHHHHHHHHHHcCceEEEEe-ccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCH--HHHHHHHHcCCcchHHHHhc
Q 018446          198 DPVEIARSYEKGGAACLSIL-TDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDA--WQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL-TD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdp--yQI~eAr~~GADAVLLIaai  271 (355)
                      +..+..+...++||+.|=+- -|..|+..   .++.++.+|+. ++.|+...=|+-||  | +..+..+|||.|.+-...
T Consensus        20 ~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~-~~~~~~v~lmv~d~~~~-i~~~~~agad~v~vH~~~   97 (228)
T 1h1y_A           20 NLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKH-TKAYLDCHLMVTNPSDY-VEPLAKAGASGFTFHIEV   97 (228)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTT-CCSEEEEEEESSCGGGG-HHHHHHHTCSEEEEEGGG
T ss_pred             HHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhh-cCCcEEEEEEecCHHHH-HHHHHHcCCCEEEECCCC
Confidence            56677788889999997544 34444433   47899999985 56665544444444  5 778888999999887766


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEe--CCHHHHHHHhccC--CCeEEEeeCCCC
Q 018446          272 LPDLDIRYMTKICKLLGLTALVEV--HDEREMDRVLGIE--GIELIGINNRNL  320 (355)
Q Consensus       272 L~~~~L~~L~~~A~~LGLeaLVEV--H~~eELerAl~l~--ga~iIGINNRdL  320 (355)
                      .+. .+...++.++..|+.+.+-+  ++..|.-+.+...  +++.|++-..+-
T Consensus        98 ~~~-~~~~~~~~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~p  149 (228)
T 1h1y_A           98 SRD-NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEP  149 (228)
T ss_dssp             CTT-THHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCT
T ss_pred             ccc-HHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecC
Confidence            542 23677888899999999999  5544433333211  578888855543

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=95.50  E-value=0.038  Score=52.52  Aligned_cols=122  Identities=18%  Similarity=0.206  Sum_probs=85.5

Q ss_pred             CCHHHHHHHHHHcCceEEEEecc--------C-CCCCCCHHHHHHHHhcCCCCCeeccc--cccCHHHHHHHHHcCCcch
Q 018446          197 FDPVEIARSYEKGGAACLSILTD--------E-KYFKGSFENLEAVRSAGVKCPLLCKE--FIVDAWQIYYARTKGADAV  265 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD--------~-~fF~GS~edL~~VR~a~v~lPVLrKD--FIIdpyQI~eAr~~GADAV  265 (355)
                      +++..+.+..+..||.++-+-.+        + .-|.+..+.++.+|+  +++||+.|.  +..++-....+..+|||+|
T Consensus       132 ~~~~~~~~a~~~~~~~a~~i~~n~~~~~~~~~~~~~~~~~~~i~~vr~--~~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I  209 (332)
T 1vcf_A          132 YGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLP--LPFPVMVKEVGHGLSREAALALRDLPLAAV  209 (332)
T ss_dssp             CCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCS--CSSCEEEECSSSCCCHHHHHHHTTSCCSEE
T ss_pred             cChHHHHHHHhhcCCCceeeccchHHHHhcCCCccHHHHHHHHHHHHc--CCCCEEEEecCCCCCHHHHHHHHHcCCCEE
Confidence            56777776666667776544321        1 124555789999986  699999996  2278888888999999999


Q ss_pred             HHHH------------hc---------C--CHHHHHHHHHHHHHc-CCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCC
Q 018446          266 LLIA------------AV---------L--PDLDIRYMTKICKLL-GLTALV--EVHDEREMDRVLGIEGIELIGINNRN  319 (355)
Q Consensus       266 LLIa------------ai---------L--~~~~L~~L~~~A~~L-GLeaLV--EVH~~eELerAl~l~ga~iIGINNRd  319 (355)
                      .+.-            ..         +  ....+..+.+....+ ++..+.  -|++.+++.+++.+ ||+.++|-..-
T Consensus       210 ~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~-GAd~V~igr~~  288 (332)
T 1vcf_A          210 DVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALAL-GADLLAVARPL  288 (332)
T ss_dssp             ECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHH-TCSEEEECGGG
T ss_pred             EeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHh-CCChHhhhHHH
Confidence            7732            11         1  112445556666677 677777  68999999999997 99999997765


Q ss_pred             CC
Q 018446          320 LE  321 (355)
Q Consensus       320 L~  321 (355)
                      |.
T Consensus       289 l~  290 (332)
T 1vcf_A          289 LR  290 (332)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=95.43  E-value=0.022  Score=51.01  Aligned_cols=94  Identities=17%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHc---CCc
Q 018446          190 RGILREDFDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK---GAD  263 (355)
Q Consensus       190 kG~I~~~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~---GAD  263 (355)
                      +|+....-++.+.++.+++.|+..|-+.+   |..+++-+++.+.++++. +++||+.-==|-++-.+.+...+   |||
T Consensus       139 ~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~-~~ipvia~GGI~~~~d~~~~~~~~~~Gad  217 (244)
T 1vzw_A          139 RGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAA-TDRPVVASGGVSSLDDLRAIAGLVPAGVE  217 (244)
T ss_dssp             SSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHT-CSSCEEEESCCCSHHHHHHHHTTGGGTEE
T ss_pred             cCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHhhccCCCc
Confidence            45444333889999999999999887765   222344468999999985 89999986555667999999999   999


Q ss_pred             chHHHHhcCCHH-HHHHHHHHH
Q 018446          264 AVLLIAAVLPDL-DIRYMTKIC  284 (355)
Q Consensus       264 AVLLIaaiL~~~-~L~~L~~~A  284 (355)
                      +|++.-+++... .+++..++.
T Consensus       218 gv~vG~al~~~~~~~~~~~~~~  239 (244)
T 1vzw_A          218 GAIVGKALYAKAFTLEEALEAT  239 (244)
T ss_dssp             EEEECHHHHTTSSCHHHHHHHH
T ss_pred             eeeeeHHHHcCCCCHHHHHHHh
Confidence            999988888653 455555543

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=95.18  E-value=0.086  Score=53.73  Aligned_cols=92  Identities=20%  Similarity=0.316  Sum_probs=67.9

Q ss_pred             HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cC--CHHHHHHHHHHHHHc-------CCcEEE-
Q 018446          227 FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLL-------GLTALV-  293 (355)
Q Consensus       227 ~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL--~~~~L~~L~~~A~~L-------GLeaLV-  293 (355)
                      ++++..+|+. +++||+.|.. .++-....+..+|||+|.+.-.   .+  ....+..+..++..+       ++..+. 
T Consensus       332 ~~~i~~lr~~-~~~PvivKgv-~~~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~  409 (511)
T 1kbi_A          332 WKDIEELKKK-TKLPIVIKGV-QRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVD  409 (511)
T ss_dssp             HHHHHHHHHH-CSSCEEEEEE-CSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEE
T ss_pred             HHHHHHHHHH-hCCcEEEEeC-CCHHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEE
Confidence            7899999996 8999999964 4566677888999999988211   11  112355555666655       566666 


Q ss_pred             -EeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446          294 -EVHDEREMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       294 -EVH~~eELerAl~l~ga~iIGINNRdL~  321 (355)
                       -|++.+++.+++.+ ||+.++|-..-|.
T Consensus       410 GGI~~g~Dv~kaLal-GAdaV~iGr~~l~  437 (511)
T 1kbi_A          410 GGVRRGTDVLKALCL-GAKGVGLGRPFLY  437 (511)
T ss_dssp             SSCCSHHHHHHHHHH-TCSEEEECHHHHH
T ss_pred             CCCCCHHHHHHHHHc-CCCEEEECHHHHH
Confidence             48999999999998 9999999764443

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=95.14  E-value=0.039  Score=55.19  Aligned_cols=121  Identities=14%  Similarity=0.157  Sum_probs=91.5

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH-----------
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI-----------  268 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI-----------  268 (355)
                      .+.+..+.+.|++++-|-|...+|.+-++.+..+++. .++|++.|... ++-....+.  |||+|-+=           
T Consensus       230 ~~~a~~l~~~gvd~lvvdta~G~~~~~L~~I~~l~~~-~~vpvi~k~v~-~~~~a~~l~--G~d~v~vg~g~g~~~~~r~  305 (486)
T 2cu0_A          230 IKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQK-VDADFIVGNIA-NPKAVDDLT--FADAVKVGIGPGSICTTRI  305 (486)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHT-CCSEEEEEEEC-CHHHHTTCT--TSSEEEECSSCSTTBCHHH
T ss_pred             HHHHHHHHHhcCCceEEEecCCcEeehhhHHHHHHHH-hCCccccCCcC-CHHHHHHhh--CCCeEEEeeeeccceeeeE
Confidence            6678889999999998888777888888899999985 69999999988 444443333  99998750           


Q ss_pred             ---HhcCCHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          269 ---AAVLPDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       269 ---aaiL~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                         ..+-....+..+.+.+...++.++.  -+.+..++-+|+.+ ||+.+++-.+=+.|.|.
T Consensus       306 ~~~~g~~~~~~l~~~~~~~~~~~vpVia~GGi~~~~di~kalal-GA~~v~~g~~~~~~~e~  366 (486)
T 2cu0_A          306 VAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAA-GADAVMLGNLLAGTKEA  366 (486)
T ss_dssp             HTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHT-TCSEEEESTTTTTBTTC
T ss_pred             EeecCcchHHHHHHHHHHHHHcCCcEEecCCCCCHHHHHHHHHc-CCCceeeChhhhcCccC
Confidence               0011123455556667777886666  59999999999997 99999999998877553

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=95.13  E-value=0.012  Score=53.84  Aligned_cols=122  Identities=18%  Similarity=0.265  Sum_probs=77.4

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec---cCCC----C---------CC-----CHHHHHHH
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT---DEKY----F---------KG-----SFENLEAV  233 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT---D~~f----F---------~G-----S~edL~~V  233 (355)
                      ++..+|.=+--..|+.      -+..++++.++++||++|-+-+   ||..    .         +|     .++.++.+
T Consensus        16 ~~~~~~~~i~~g~~~~------~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~i   89 (262)
T 1rd5_A           16 GKTAFIPYITAGDPDL------ATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREV   89 (262)
T ss_dssp             TCCEEEEEEETTSSCH------HHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             CCceEEEEeeCCCCCH------HHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            3446766663333331      1356789999999999999953   2211    0         11     25678888


Q ss_pred             HhcCCCCCeeccccccCH---HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe--CC-HHHHHHHhc
Q 018446          234 RSAGVKCPLLCKEFIVDA---WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV--HD-EREMDRVLG  306 (355)
Q Consensus       234 R~a~v~lPVLrKDFIIdp---yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV--H~-~eELerAl~  306 (355)
                      |+. +++||...+. .++   |-+..+..+|||+|.+.  -++.+++.++++.+++.|+..++=+  ++ .+.++.+..
T Consensus        90 r~~-~~~Pv~~m~~-~~~~~~~~~~~a~~aGadgv~v~--d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~  164 (262)
T 1rd5_A           90 TPE-LSCPVVLLSY-YKPIMFRSLAKMKEAGVHGLIVP--DLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITK  164 (262)
T ss_dssp             GGG-CSSCEEEECC-SHHHHSCCTHHHHHTTCCEEECT--TCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHH
T ss_pred             Hhc-CCCCEEEEec-CcHHHHHHHHHHHHcCCCEEEEc--CCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHh
Confidence            886 8999865431 122   12345999999998875  3344578899999999999865544  34 444455444

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=95.11  E-value=0.025  Score=55.55  Aligned_cols=53  Identities=11%  Similarity=0.159  Sum_probs=49.7

Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       272 L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      |+.+.++.|.++|+++||..+-|+.|.+.++.+.+. +++++=|-.||+..|..
T Consensus        88 l~~e~~~~L~~~~~~~Gi~~~st~~d~~svd~l~~~-~v~~~KI~S~~~~n~~L  140 (349)
T 2wqp_A           88 LNEEDEIKLKEYVESKGMIFISTLFSRAAALRLQRM-DIPAYKIGSGECNNYPL  140 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHH-TCSCEEECGGGTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCeEEEeeCCHHHHHHHHhc-CCCEEEECcccccCHHH
Confidence            788999999999999999999999999999998886 89999999999998765

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=95.01  E-value=0.13  Score=47.06  Aligned_cols=127  Identities=13%  Similarity=0.109  Sum_probs=90.5

Q ss_pred             cCCCCCCCCCCC-CHHHHHHHHHHcCceEEEE-eccCCC---CCCCHHHHHHHHhc-CCCCCeeccccccCHH-HHHHHH
Q 018446          186 ASPSRGILREDF-DPVEIARSYEKGGAACLSI-LTDEKY---FKGSFENLEAVRSA-GVKCPLLCKEFIVDAW-QIYYAR  258 (355)
Q Consensus       186 aSPSkG~I~~~~-Dp~~iA~~Ye~~GAaaISV-LTD~~f---F~GS~edL~~VR~a-~v~lPVLrKDFIIdpy-QI~eAr  258 (355)
                      -|||  +++-|| +..+-.+..+++||..+=| .-|..|   +.-..+.++.+|+. +.++|+.++=.+-+|. -+..+.
T Consensus         7 i~ps--il~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~   84 (228)
T 3ovp_A            7 IGPS--ILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMA   84 (228)
T ss_dssp             EEEB--CTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHH
T ss_pred             eeee--heeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHH
Confidence            3577  466665 5667778888999998887 445555   45678899999986 2578877655555443 366778


Q ss_pred             HcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCC---HHHHHHHhccCCCeEEEeeCC
Q 018446          259 TKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHD---EREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       259 ~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~---~eELerAl~l~ga~iIGINNR  318 (355)
                      .+|||.|.+-.....  .+.++++.++++|+.+-|-++.   .+.++..+.  .++.|.+-..
T Consensus        85 ~aGad~itvH~Ea~~--~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~--~~D~Vl~msv  143 (228)
T 3ovp_A           85 VAGANQYTFHLEATE--NPGALIKDIRENGMKVGLAIKPGTSVEYLAPWAN--QIDMALVMTV  143 (228)
T ss_dssp             HHTCSEEEEEGGGCS--CHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGG--GCSEEEEESS
T ss_pred             HcCCCEEEEccCCch--hHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhc--cCCeEEEeee
Confidence            899999999876653  6788999999999999999984   444444443  3566655333

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=94.95  E-value=0.05  Score=49.42  Aligned_cols=129  Identities=19%  Similarity=0.139  Sum_probs=90.5

Q ss_pred             CCCCCCCCCCC-CHHHHHHHHHHcCceEEEEe-ccCCCC---CCCHHHHHHHHhcCCCCCeeccccccCH-HHHHHHHHc
Q 018446          187 SPSRGILREDF-DPVEIARSYEKGGAACLSIL-TDEKYF---KGSFENLEAVRSAGVKCPLLCKEFIVDA-WQIYYARTK  260 (355)
Q Consensus       187 SPSkG~I~~~~-Dp~~iA~~Ye~~GAaaISVL-TD~~fF---~GS~edL~~VR~a~v~lPVLrKDFIIdp-yQI~eAr~~  260 (355)
                      +||-  +.-|+ +..+..+..+++||+.|=+= -|..|.   .-.++.++.+|+. ++.|+.+.=.+-|| .-+..+..+
T Consensus         8 ~psi--la~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~-~~~~~~vhlmv~dp~~~i~~~~~a   84 (230)
T 1tqj_A            8 APSI--LSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPL-TKKTLDVHLMIVEPEKYVEDFAKA   84 (230)
T ss_dssp             EEBG--GGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGG-CCSEEEEEEESSSGGGTHHHHHHH
T ss_pred             EEEe--eecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhh-cCCcEEEEEEccCHHHHHHHHHHc
Confidence            5652  34343 56677888889999985332 254443   3456889999985 67776554444454 126778999


Q ss_pred             CCcchHHHHh--cCCHHHHHHHHHHHHHcCCcEEEEe--CCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446          261 GADAVLLIAA--VLPDLDIRYMTKICKLLGLTALVEV--HDEREMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       261 GADAVLLIaa--iL~~~~L~~L~~~A~~LGLeaLVEV--H~~eELerAl~l~ga~iIGINNRdL~  321 (355)
                      |||.|.+-..  ..  +.+.++++.+++.|+.+-+-+  +|..|.-+++. .+++.|++=..+-.
T Consensus        85 Gadgv~vh~e~~~~--~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~-~~~D~v~~msv~pg  146 (230)
T 1tqj_A           85 GADIISVHVEHNAS--PHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVL-PVCDLILIMSVNPG  146 (230)
T ss_dssp             TCSEEEEECSTTTC--TTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTG-GGCSEEEEESSCC-
T ss_pred             CCCEEEECcccccc--hhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHH-hcCCEEEEEEeccc
Confidence            9999987755  33  367889999999999999999  78777666554 37899977777665

>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}

Probab=94.84  E-value=0.08  Score=52.05  Aligned_cols=54  Identities=22%  Similarity=0.325  Sum_probs=50.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      -|+.+.++.|.++|+++||..+-|+-|.+.++...+. |++++=|-.||+..|..
T Consensus        74 el~~e~~~~L~~~~~~~Gi~~~st~fD~~svd~l~~~-~v~~~KI~S~~~~N~pL  127 (350)
T 3g8r_A           74 RLQPEQMQKLVAEMKANGFKAICTPFDEESVDLIEAH-GIEIIKIASCSFTDWPL  127 (350)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHT-TCCEEEECSSSTTCHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCcEEeccCCHHHHHHHHHc-CCCEEEECcccccCHHH
Confidence            4899999999999999999999999999999999887 89999999999988864

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=94.74  E-value=0.69  Score=41.00  Aligned_cols=134  Identities=16%  Similarity=0.217  Sum_probs=85.6

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCC-C-C-HHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK-G-S-FENLEAVRSAGVKCPLLCKEFIVDAWQI  254 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~-G-S-~edL~~VR~a~v~lPVLrKDFIIdpyQI  254 (355)
                      .+|.-+++.-|..+.+-.  ++.+.++.+.++||++|.+-++...-. | . .+.+..+|+...+++++..=  -++-+.
T Consensus        71 p~i~~~~~~~~~~~~~i~--~~~~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~--~t~~ea  146 (234)
T 1yxy_A           71 PIIGIIKKDYPPQEPFIT--ATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADI--STFDEG  146 (234)
T ss_dssp             CEEEECBCCCTTSCCCBS--CSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEEC--SSHHHH
T ss_pred             CEEeeEcCCCCccccccC--ChHHHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeC--CCHHHH
Confidence            456555655554333221  356778889999999998877643221 2 2 57788888752366766532  245567


Q ss_pred             HHHHHcCCcch--HHHH---hcC--CHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeC
Q 018446          255 YYARTKGADAV--LLIA---AVL--PDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       255 ~eAr~~GADAV--LLIa---aiL--~~~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINN  317 (355)
                      ..+..+|||.|  ++.-   .-.  ...++..+-++... ++..++.  |+|.+++..++.+ ||+.+.|=.
T Consensus       147 ~~a~~~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~-Gad~v~vGs  216 (234)
T 1yxy_A          147 LVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKINDL-GVAGIVVGG  216 (234)
T ss_dssp             HHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHTT-CCSEEEECH
T ss_pred             HHHHHcCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHC-CCCEEEEch
Confidence            78889999998  4442   110  11234445455555 6666664  8899999999996 999888754

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=94.71  E-value=0.063  Score=49.29  Aligned_cols=126  Identities=16%  Similarity=0.150  Sum_probs=87.9

Q ss_pred             CCCCCCCCCCC-CHHHHHHHHHHcCceEE--EEeccCCC---CCCCHHHHHHHHhcCCCCCeeccccccCHHH-HHHHHH
Q 018446          187 SPSRGILREDF-DPVEIARSYEKGGAACL--SILTDEKY---FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQ-IYYART  259 (355)
Q Consensus       187 SPSkG~I~~~~-Dp~~iA~~Ye~~GAaaI--SVLTD~~f---F~GS~edL~~VR~a~v~lPVLrKDFIIdpyQ-I~eAr~  259 (355)
                      |||  +++-|| +..+-.+.. ++||+.+  =|. |..|   +.=.+..++.+|+. ++.|+.+.=-+-||-+ +..+..
T Consensus         4 ~pS--ila~D~~~l~~~i~~~-~~gad~lHvDvm-DG~fvpn~t~G~~~v~~lr~~-~~~~~dvhLmv~dp~~~i~~~~~   78 (231)
T 3ctl_A            4 SPS--LMCMDLLKFKEQIEFI-DSHADYFHIDIM-DGHFVPNLTLSPFFVSQVKKL-ATKPLDCHLMVTRPQDYIAQLAR   78 (231)
T ss_dssp             EEB--GGGSCGGGHHHHHHHH-HTTCSCEEEEEE-CSSSSSCCCBCHHHHHHHHTT-CCSCEEEEEESSCGGGTHHHHHH
T ss_pred             Eee--hhhCChhhHHHHHHHH-HcCCCEEEEEEE-eCccCccchhcHHHHHHHHhc-cCCcEEEEEEecCHHHHHHHHHH
Confidence            576  355554 555556666 8899874  444 5443   33357899999985 6788766555556554 788899


Q ss_pred             cCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC--CHH-HHHHHhccCCCeEEEeeCCCC
Q 018446          260 KGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH--DER-EMDRVLGIEGIELIGINNRNL  320 (355)
Q Consensus       260 ~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH--~~e-ELerAl~l~ga~iIGINNRdL  320 (355)
                      +|||.|.+.+..+++ .+.++++.++++|+.+-|.++  |.. .++..+.  ++++|.+=..|.
T Consensus        79 aGAd~itvh~Ea~~~-~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~--~~D~VlvmsV~p  139 (231)
T 3ctl_A           79 AGADFITLHPETING-QAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIH--KADKITVMTVDP  139 (231)
T ss_dssp             HTCSEEEECGGGCTT-THHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGG--GCSEEEEESSCT
T ss_pred             cCCCEEEECcccCCc-cHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHh--cCCEEEEeeecc
Confidence            999999988777443 688999999999999999986  333 3333333  688887655544

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=94.70  E-value=0.063  Score=47.01  Aligned_cols=112  Identities=16%  Similarity=0.091  Sum_probs=78.4

Q ss_pred             CHHHHHHHHHHcCceEEEEec-cC---CCCCCCHHHHHHHHhcCCCCCeeccccccCHH-HHHHHHHcCCcchHHHHhcC
Q 018446          198 DPVEIARSYEKGGAACLSILT-DE---KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAW-QIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT-D~---~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpy-QI~eAr~~GADAVLLIaaiL  272 (355)
                      +..+.++...++||..+-+-- |.   .++.-.++.++.+|+. ++.|+..-=++-|+- .+..+..+|||.|.+-....
T Consensus        17 ~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~-~~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~~   95 (220)
T 2fli_A           17 NFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKH-SKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTEST   95 (220)
T ss_dssp             GHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTT-CCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGC
T ss_pred             HHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHh-CCCCEEEEEeecCHHHHHHHHHHcCCCEEEEccCcc
Confidence            567788889999999875542 32   3334448999999985 677776543333432 47889999999998866554


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEe--CCHHHHHHHhccCCCeEE
Q 018446          273 PDLDIRYMTKICKLLGLTALVEV--HDEREMDRVLGIEGIELI  313 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLVEV--H~~eELerAl~l~ga~iI  313 (355)
                        +.+..+.+.+++.|+...+-+  ++..|.-+++. .+++.|
T Consensus        96 --~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~-~~~d~v  135 (220)
T 2fli_A           96 --RHIHGALQKIKAAGMKAGVVINPGTPATALEPLL-DLVDQV  135 (220)
T ss_dssp             --SCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGT-TTCSEE
T ss_pred             --ccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHH-hhCCEE
Confidence              356778888888999999999  55555444444 357777

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=94.61  E-value=0.13  Score=50.78  Aligned_cols=93  Identities=15%  Similarity=0.264  Sum_probs=69.6

Q ss_pred             CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cC--CHHHHHHHHHHHHHcC--CcEEEE--e
Q 018446          225 GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLLG--LTALVE--V  295 (355)
Q Consensus       225 GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL--~~~~L~~L~~~A~~LG--LeaLVE--V  295 (355)
                      .++++++.+|+. +++||+.|.. .++-....+..+|||+|.+.-.   .+  +...+..+.+....++  +..+..  |
T Consensus       239 ~~~~~i~~lr~~-~~~PvivKgv-~~~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI  316 (392)
T 2nzl_A          239 ISWEDIKWLRRL-TSLPIVAKGI-LRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGV  316 (392)
T ss_dssp             CCHHHHHHHC---CCSCEEEEEE-CCHHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSC
T ss_pred             HHHHHHHHHHHh-hCCCEEEEec-CCHHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCC
Confidence            468999999985 8999999965 6788888899999999987321   11  1235566666766664  666663  8


Q ss_pred             CCHHHHHHHhccCCCeEEEeeCCCC
Q 018446          296 HDEREMDRVLGIEGIELIGINNRNL  320 (355)
Q Consensus       296 H~~eELerAl~l~ga~iIGINNRdL  320 (355)
                      ++.+++.+++.+ ||+.++|-.--|
T Consensus       317 ~~g~Dv~kalal-GAd~V~iGr~~l  340 (392)
T 2nzl_A          317 RKGTDVLKALAL-GAKAVFVGRPIV  340 (392)
T ss_dssp             CSHHHHHHHHHT-TCSEEEECHHHH
T ss_pred             CCHHHHHHHHHh-CCCeeEECHHHH
Confidence            999999999997 999999965433

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=94.59  E-value=0.02  Score=51.15  Aligned_cols=112  Identities=18%  Similarity=0.081  Sum_probs=77.0

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee--ccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI  277 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL--rKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L  277 (355)
                      .++++.. .+|++.+=+=+.. ++...++.++.+|+...+.|+.  .|=.-...+.+.++..+|||.|.+-... +++.+
T Consensus        22 ~~~~~~~-~~~vd~ie~g~~~-~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~-~~~~~   98 (218)
T 3jr2_A           22 VAVASNV-ASYVDVIEVGTIL-AFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAA-HIATI   98 (218)
T ss_dssp             HHHHHHH-GGGCSEEEECHHH-HHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTS-CHHHH
T ss_pred             HHHHHHh-cCCceEEEeCcHH-HHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCC-CHHHH
Confidence            3555554 4577777654422 2334578899998752345553  3322245678889999999987765433 34568


Q ss_pred             HHHHHHHHHcCCcEEEE---eCCHHHHHHHhccCCCeEEEe
Q 018446          278 RYMTKICKLLGLTALVE---VHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVE---VH~~eELerAl~l~ga~iIGI  315 (355)
                      +++++.+++.|+.+.++   +.|.++++.+... |++.+++
T Consensus        99 ~~~~~~~~~~g~~~~~d~l~~~T~~~~~~~~~~-g~d~v~~  138 (218)
T 3jr2_A           99 AACKKVADELNGEIQIEIYGNWTMQDAKAWVDL-GITQAIY  138 (218)
T ss_dssp             HHHHHHHHHHTCEEEEECCSSCCHHHHHHHHHT-TCCEEEE
T ss_pred             HHHHHHHHHhCCccceeeeecCCHHHHHHHHHc-Cccceee
Confidence            89999999999998654   5688899998886 8987776

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=94.26  E-value=0.06  Score=49.82  Aligned_cols=124  Identities=17%  Similarity=0.206  Sum_probs=79.9

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec---cCCCCCC-------------------CHHHHHH
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT---DEKYFKG-------------------SFENLEA  232 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~G-------------------S~edL~~  232 (355)
                      ++.++|.=+=-..|+..      +-.++++.++++||++|=+=+   ||. ..|                   .++.++.
T Consensus        15 ~~~~~i~~i~~gdp~~~------~~~~~~~~l~~~GaD~ieig~P~sdp~-~DG~~i~~a~~~al~~G~~~~~~~~~v~~   87 (268)
T 1qop_A           15 REGAFVPFVTLGDPGIE------QSLKIIDTLIDAGADALELGVPFSDPL-ADGPTIQNANLRAFAAGVTPAQCFEMLAI   87 (268)
T ss_dssp             TCCEEEEEEETTSSCHH------HHHHHHHHHHHTTCSSEEEECCCSCCT-TCCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CCceEEEEeeCCCCCHH------HHHHHHHHHHHCCCCEEEECCCCCCcc-CCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            34567777644444321      346789999999999988744   221 112                   2467888


Q ss_pred             HHhcCCCCCeec---cccccC---HHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe---CCHHHHHH
Q 018446          233 VRSAGVKCPLLC---KEFIVD---AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV---HDEREMDR  303 (355)
Q Consensus       233 VR~a~v~lPVLr---KDFIId---pyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV---H~~eELer  303 (355)
                      +|+..+++||..   -+-+..   ..-+..+..+|||+|++.  -++.+++..+++.+++.|+..++=+   .+.+.++.
T Consensus        88 ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~--d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~  165 (268)
T 1qop_A           88 IREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVA--DVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQ  165 (268)
T ss_dssp             HHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEET--TCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHH
T ss_pred             HHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEc--CCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence            887547899754   111110   345677889999987764  4445678999999999999754422   44566666


Q ss_pred             Hhcc
Q 018446          304 VLGI  307 (355)
Q Consensus       304 Al~l  307 (355)
                      ....
T Consensus       166 i~~~  169 (268)
T 1qop_A          166 VASY  169 (268)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            5543

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=94.14  E-value=0.077  Score=49.28  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=73.1

Q ss_pred             CCHHHHHHHHHHcCceEEEEec----------------------------cCC------CCCCCHHHHHHHHhcCCCCCe
Q 018446          197 FDPVEIARSYEKGGAACLSILT----------------------------DEK------YFKGSFENLEAVRSAGVKCPL  242 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLT----------------------------D~~------fF~GS~edL~~VR~a~v~lPV  242 (355)
                      .+|.+..+ ..+.||+.|+|--                            +..      .+..+++.+..+++. +++|+
T Consensus       133 ~~~~~~~~-a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~-~~~pv  210 (297)
T 2zbt_A          133 RNLGEALR-RIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDH-GRLPV  210 (297)
T ss_dssp             SSHHHHHH-HHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHH-SSCSS
T ss_pred             CCHHHHHH-HHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHh-cCCCc
Confidence            46666544 5788999998751                            111      245567888999885 78997


Q ss_pred             e-cccccc-CHHHHHHHHHcCCcchHHHHhcCCH----HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEee
Q 018446          243 L-CKEFIV-DAWQIYYARTKGADAVLLIAAVLPD----LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       243 L-rKDFII-dpyQI~eAr~~GADAVLLIaaiL~~----~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGIN  316 (355)
                      + -=+-.| ++-++.++..+|||+|++--+++..    +.++.|.+..+.        ..+.+.+....+.-|..+.+|+
T Consensus       211 i~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~~--------~~~~~~~~~~~~~~g~~~~~~~  282 (297)
T 2zbt_A          211 VNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAH--------YNDPEVLAEVSEDLGEPMVGIN  282 (297)
T ss_dssp             CEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHT--------TTCHHHHHHHHTTCCCCC----
T ss_pred             EEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHH--------HhchHhhhHHHHhcCceeEEee
Confidence            5 246788 9999999999999999998888832    344555544443        2355666655555566788888


Q ss_pred             CCCC
Q 018446          317 NRNL  320 (355)
Q Consensus       317 NRdL  320 (355)
                      -++|
T Consensus       283 ~~~~  286 (297)
T 2zbt_A          283 LDQL  286 (297)
T ss_dssp             ----
T ss_pred             chhc
Confidence            7765

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=94.12  E-value=0.074  Score=49.62  Aligned_cols=121  Identities=12%  Similarity=0.043  Sum_probs=77.1

Q ss_pred             CHHHHHHHHHHcCce---EEEEecc------CCCCCCCHH----HHHHHHhcCCCCCeeccccc-cCHHH----HHHHHH
Q 018446          198 DPVEIARSYEKGGAA---CLSILTD------EKYFKGSFE----NLEAVRSAGVKCPLLCKEFI-VDAWQ----IYYART  259 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAa---aISVLTD------~~fF~GS~e----dL~~VR~a~v~lPVLrKDFI-IdpyQ----I~eAr~  259 (355)
                      +..+.|+...++|++   +|-+.--      ...|+|+++    .++.+|++ +++||+.|=-. ++..+    ...+..
T Consensus       107 ~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~-~~~Pv~vK~~~~~~~~~~~~~a~~~~~  185 (314)
T 2e6f_A          107 ENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLA-YGLPFGVKMPPYFDIAHFDTAAAVLNE  185 (314)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHH-HCSCEEEEECCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHh-cCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            345566666777888   7777432      123455765    56667775 68999877211 36556    344567


Q ss_pred             cC-CcchHHHHhc--------------C--------------CHHHHHHHHHHHHHc-CCcEEE--EeCCHHHHHHHhcc
Q 018446          260 KG-ADAVLLIAAV--------------L--------------PDLDIRYMTKICKLL-GLTALV--EVHDEREMDRVLGI  307 (355)
Q Consensus       260 ~G-ADAVLLIaai--------------L--------------~~~~L~~L~~~A~~L-GLeaLV--EVH~~eELerAl~l  307 (355)
                      +| +|+|.+.-..              +              .+..+..+.++.+.+ ++..+.  -|+|.+++.+++.+
T Consensus       186 aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~  265 (314)
T 2e6f_A          186 FPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILA  265 (314)
T ss_dssp             CTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHH
T ss_pred             cCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHc
Confidence            89 9998754322              0              022355555666666 555444  47999999999986


Q ss_pred             CCCeEEEeeCCCC
Q 018446          308 EGIELIGINNRNL  320 (355)
Q Consensus       308 ~ga~iIGINNRdL  320 (355)
                       ||+.|+|-..-+
T Consensus       266 -GAd~V~ig~~~l  277 (314)
T 2e6f_A          266 -GASMVQVGTALQ  277 (314)
T ss_dssp             -TCSSEEECHHHH
T ss_pred             -CCCEEEEchhhH
Confidence             999999865433

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=94.09  E-value=0.049  Score=53.96  Aligned_cols=68  Identities=21%  Similarity=0.319  Sum_probs=55.6

Q ss_pred             HHHHHcCCcchHHHHh----------cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          255 YYARTKGADAVLLIAA----------VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       255 ~eAr~~GADAVLLIaa----------iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                      ..++.+|||+|-.-+-          -|+.+.++.|.++|+++||..+.|+|+.+.++.+.+.  ++++=|..|+...|.
T Consensus       163 ~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~~d~~~~~~l~~~--vd~lkIgs~~~~n~~  240 (385)
T 3nvt_A          163 ESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEIVTPADIEVALDY--VDVIQIGARNMQNFE  240 (385)
T ss_dssp             HHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCSGGGHHHHTTT--CSEEEECGGGTTCHH
T ss_pred             HHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHHhh--CCEEEECcccccCHH
Confidence            3455667776543221          2678899999999999999999999999999999875  899999999998873

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=94.00  E-value=0.036  Score=55.14  Aligned_cols=54  Identities=17%  Similarity=0.180  Sum_probs=50.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      -|+.+.++.|.++|+++||..+-|+.|.+.++.+.+. +++++=|-.||+..|..
T Consensus        97 ~l~~e~~~~L~~~~~~~Gi~~~stpfD~~svd~l~~~-~vd~~KIgS~~~~N~pL  150 (385)
T 1vli_A           97 EMPAEWILPLLDYCREKQVIFLSTVCDEGSADLLQST-SPSAFKIASYEINHLPL  150 (385)
T ss_dssp             SSCGGGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTT-CCSCEEECGGGTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEccCCHHHHHHHHhc-CCCEEEECcccccCHHH
Confidence            4789999999999999999999999999999998886 89999999999998764

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=93.91  E-value=0.2  Score=46.30  Aligned_cols=121  Identities=18%  Similarity=0.191  Sum_probs=77.4

Q ss_pred             CceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec---cCCCCCC-------------------CHHHHHHH
Q 018446          176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT---DEKYFKG-------------------SFENLEAV  233 (355)
Q Consensus       176 ~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~G-------------------S~edL~~V  233 (355)
                      +.++|.=+=.-.|+..      .-.++++.++++||++|=+=+   ||.. .|                   .++.++.+
T Consensus        16 ~~~~i~~i~~g~p~~~------~~~~~~~~l~~~G~D~IElG~P~sdP~a-dgp~i~~a~~~al~~G~~~~~~~~~v~~i   88 (262)
T 2ekc_A           16 EKALVSYLMVGYPDYE------TSLKAFKEVLKNGTDILEIGFPFSDPVA-DGPTIQVAHEVALKNGIRFEDVLELSETL   88 (262)
T ss_dssp             BCEEEEEEETTSSCHH------HHHHHHHHHHHTTCSEEEEECCCSCCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CceEEEEecCCCCChH------HHHHHHHHHHHcCCCEEEECCCCCCccc-ccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            4466766644444421      346799999999999998843   1110 11                   24668888


Q ss_pred             HhcCC-CCCeecc-ccc-cC----HHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEE--EEe-CCHHHHHH
Q 018446          234 RSAGV-KCPLLCK-EFI-VD----AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL--VEV-HDEREMDR  303 (355)
Q Consensus       234 R~a~v-~lPVLrK-DFI-Id----pyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaL--VEV-H~~eELer  303 (355)
                      |+. + ++|++.- ++= ++    ..-+..+..+|||+|++.  -|+.+++..+.+.|++.|++.+  +.- ++.+.++.
T Consensus        89 r~~-~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~--dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~  165 (262)
T 2ekc_A           89 RKE-FPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVP--DLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKL  165 (262)
T ss_dssp             HHH-CTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECT--TCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHH
T ss_pred             Hhh-cCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH
Confidence            886 6 8998772 000 00    122456889999997764  4566789999999999998743  333 44555655


Q ss_pred             Hhc
Q 018446          304 VLG  306 (355)
Q Consensus       304 Al~  306 (355)
                      ...
T Consensus       166 ia~  168 (262)
T 2ekc_A          166 ICE  168 (262)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=93.82  E-value=1.7  Score=38.01  Aligned_cols=146  Identities=12%  Similarity=0.110  Sum_probs=92.8

Q ss_pred             cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCC-CC-HHHHHHHHhcCCC
Q 018446          162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK-GS-FENLEAVRSAGVK  239 (355)
Q Consensus       162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~-GS-~edL~~VR~a~v~  239 (355)
                      +....++...   + ..++.-+|+.-|..+.+-.  .+.+.+..+.+.||+.+.+-++-..-. .+ .+.+..+|+....
T Consensus        46 ~~i~~i~~~~---~-~pv~~~~~~~~~~~~~~i~--~~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~  119 (223)
T 1y0e_A           46 EDILAIKETV---D-LPVIGIVKRDYDHSDVFIT--ATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPN  119 (223)
T ss_dssp             HHHHHHHHHC---C-SCEEEECBCCCTTCCCCBS--CSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhc---C-CCEEeeeccCCCccccccC--CcHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCC
Confidence            3444555432   3 3466666665433232211  234556677888999999988643211 23 4667888875225


Q ss_pred             CCeeccccccCHHHHHHHHHcCCcchHHHHh-------cC--CHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccC
Q 018446          240 CPLLCKEFIVDAWQIYYARTKGADAVLLIAA-------VL--PDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIE  308 (355)
Q Consensus       240 lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa-------iL--~~~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~  308 (355)
                      .+++. + +-++.+..++..+|||.|.+-..       -.  ....+..+-+++..+++..++.  |+|.+++.+++.+ 
T Consensus       120 ~~v~~-~-~~t~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~-  196 (223)
T 1y0e_A          120 VEIMA-D-IATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDL-  196 (223)
T ss_dssp             SEEEE-E-CSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHT-
T ss_pred             ceEEe-c-CCCHHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHc-
Confidence            56654 3 23566788889999998754221       12  3445666767777788777774  7899999999996 


Q ss_pred             CCeEEEee
Q 018446          309 GIELIGIN  316 (355)
Q Consensus       309 ga~iIGIN  316 (355)
                      |++.+.|-
T Consensus       197 Gad~v~vG  204 (223)
T 1y0e_A          197 GVHCSVVG  204 (223)
T ss_dssp             TCSEEEEC
T ss_pred             CCCEEEEC
Confidence            99999885

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=93.67  E-value=0.064  Score=50.25  Aligned_cols=49  Identities=29%  Similarity=0.506  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       274 ~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                      .+.|+.|.++|+++||..+.|+||...++.+.++  ++++-|..|++..+.
T Consensus        73 ~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~--vd~~kIga~~~~n~~  121 (262)
T 1zco_A           73 EKALRWMREAADEYGLVTVTEVMDTRHVELVAKY--SDILQIGARNSQNFE  121 (262)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECCCGGGHHHHHHH--CSEEEECGGGTTCHH
T ss_pred             HHHHHHHHHHHHHcCCcEEEeeCCHHhHHHHHhh--CCEEEECcccccCHH
Confidence            8899999999999999999999999999999886  899999999998765

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=93.66  E-value=0.037  Score=48.28  Aligned_cols=78  Identities=18%  Similarity=0.154  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHcCceEEEEecc--CCCCC-CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446          198 DPVEIARSYEKGGAACLSILTD--EKYFK-GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD--~~fF~-GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~  274 (355)
                      ++.+.++.+.+.|++.|.|-+.  ..-|. ..++.++.+|+...++||.. ++.|.+-++.++..+|||+|..--++...
T Consensus       115 t~~~~~~~~~~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~-~gGI~~~~~~~~~~~Gad~vvvGsai~~~  193 (211)
T 3f4w_A          115 DLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAV-AGGISSQTVKDYALLGPDVVIVGSAITHA  193 (211)
T ss_dssp             SHHHHHHHHHHHTCCEEEEECCHHHHHTTCCSHHHHHHHHHHCSSCEEEE-ESSCCTTTHHHHHTTCCSEEEECHHHHTC
T ss_pred             CHHHHHHHHHHcCCCEEEEcCCCcccccCCCCHHHHHHHHHHcCCCcEEE-ECCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence            5778889999999999876421  00122 26889999998523788754 99999999999999999999988777754


Q ss_pred             HH
Q 018446          275 LD  276 (355)
Q Consensus       275 ~~  276 (355)
                      ++
T Consensus       194 ~d  195 (211)
T 3f4w_A          194 AD  195 (211)
T ss_dssp             SS
T ss_pred             CC
Confidence            33

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=93.65  E-value=0.1  Score=48.73  Aligned_cols=128  Identities=17%  Similarity=0.187  Sum_probs=91.4

Q ss_pred             ecCCCCCCCCCCC-CHHHHHHHHHHcCceEEEE-eccCCC---CCCCHHHHHHHHhcCC-CCCeeccccccCHHH-HHHH
Q 018446          185 KASPSRGILREDF-DPVEIARSYEKGGAACLSI-LTDEKY---FKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQ-IYYA  257 (355)
Q Consensus       185 RaSPSkG~I~~~~-Dp~~iA~~Ye~~GAaaISV-LTD~~f---F~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQ-I~eA  257 (355)
                      +-|||  +++-|| +..+-.+..+++||.-+=| .-|..|   +.=..+.++.+|+. + ++|+.++=-+-+|.. +..+
T Consensus        29 ~i~pS--ilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~-~p~~~ldvHLmv~~p~~~i~~~  105 (246)
T 3inp_A           29 QINPS--ILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDY-GITAGMDVHLMVKPVDALIESF  105 (246)
T ss_dssp             EEEEB--GGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHH-TCCSCEEEEEECSSCHHHHHHH
T ss_pred             eeehh--hhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHh-CCCCeEEEEEeeCCHHHHHHHH
Confidence            34788  466665 4777888889999997777 335444   45567999999986 5 889877555665543 6677


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcc-CCCeEEEeeC
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGI-EGIELIGINN  317 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l-~ga~iIGINN  317 (355)
                      ..+|||.|.+-....+  .+.+.++.++++|+.+-|.++....++++..+ ++.+.|.+=.
T Consensus       106 ~~aGAd~itvH~Ea~~--~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMs  164 (246)
T 3inp_A          106 AKAGATSIVFHPEASE--HIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMS  164 (246)
T ss_dssp             HHHTCSEEEECGGGCS--CHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEEC
T ss_pred             HHcCCCEEEEccccch--hHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEee
Confidence            8899999999877763  68889999999999999999744444432211 2466665433

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=93.50  E-value=0.076  Score=54.36  Aligned_cols=139  Identities=18%  Similarity=0.151  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCC------CHHHHHHHHhcCCCCCee----ccc------cccCHHH-HHHHHH
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKG------SFENLEAVRSAGVKCPLL----CKE------FIVDAWQ-IYYART  259 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G------S~edL~~VR~a~v~lPVL----rKD------FIIdpyQ-I~eAr~  259 (355)
                      -||+++|+.|.++||..|.|+-=.-+..|      +++.++.+++. +.+||.    -+|      ||..-.+ +.+...
T Consensus       280 ~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~-~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~  358 (555)
T 1jvn_A          280 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKT-VFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR  358 (555)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTT-CCSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhh-CCCcEEEeCccccchhcccccchHHHHHHHHHH
Confidence            49999999999999999988543333332      35677777764 789987    333      2333333 455567


Q ss_pred             cCCcchHHHHhcCCHH-H----------HHHHHHHHHHcC-------CcEEE----------------------------
Q 018446          260 KGADAVLLIAAVLPDL-D----------IRYMTKICKLLG-------LTALV----------------------------  293 (355)
Q Consensus       260 ~GADAVLLIaaiL~~~-~----------L~~L~~~A~~LG-------LeaLV----------------------------  293 (355)
                      +|||.|.+-...+.+- .          -.-+-++++.+|       +++--                            
T Consensus       359 aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  438 (555)
T 1jvn_A          359 SGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCW  438 (555)
T ss_dssp             HTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEE
T ss_pred             cCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCccee
Confidence            8999998876665320 0          112334555555       44320                            


Q ss_pred             ------------EeCCHHHHHHHhccCCCeEEEeeCCCCCcc--ccChhhHHhhhccc
Q 018446          294 ------------EVHDEREMDRVLGIEGIELIGINNRNLETF--EVDNSNTKKLLEGE  337 (355)
Q Consensus       294 ------------EVH~~eELerAl~l~ga~iIGINNRdL~Tf--evDl~~t~~L~~~~  337 (355)
                                  ++...+.++++.++ |+.-|-+++++-...  -.|++...+|.+..
T Consensus       439 ~~v~~~Gw~~~~~~~~~e~a~~~~~~-Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~  495 (555)
T 1jvn_A          439 YQCTIKGGRESRDLGVWELTRACEAL-GAGEILLNCIDKDGSNSGYDLELIEHVKDAV  495 (555)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHHHT-TCCEEEECCGGGTTTCSCCCHHHHHHHHHHC
T ss_pred             EEEEEecCccCCCCCHHHHHHHHHHc-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHhC
Confidence                        01124666777775 899888998876332  25777788877643

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=93.48  E-value=0.1  Score=50.99  Aligned_cols=74  Identities=19%  Similarity=0.185  Sum_probs=59.8

Q ss_pred             CHHHHHHHHHHcCceEEEEe-cc--C---------CCCCC---------CHHHHHHHHhcCC--CCCeeccccccCHHHH
Q 018446          198 DPVEIARSYEKGGAACLSIL-TD--E---------KYFKG---------SFENLEAVRSAGV--KCPLLCKEFIVDAWQI  254 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL-TD--~---------~fF~G---------S~edL~~VR~a~v--~lPVLrKDFIIdpyQI  254 (355)
                      +..++|+..+++||++|.|- |-  .         ..++|         +++.+..++++ +  ++||+.-==|-++-++
T Consensus       235 ~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~-v~~~ipvI~~GGI~s~~da  313 (367)
T 3zwt_A          235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYAL-TQGRVPIIGVGGVSSGQDA  313 (367)
T ss_dssp             HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHH-TTTCSCEEEESSCCSHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHH-cCCCceEEEECCCCCHHHH
Confidence            46789999999999999975 21  1         12344         46889999986 7  8999999999999999


Q ss_pred             HHHHHcCCcchHHHHhcC
Q 018446          255 YYARTKGADAVLLIAAVL  272 (355)
Q Consensus       255 ~eAr~~GADAVLLIaaiL  272 (355)
                      .++..+|||+|.+--+++
T Consensus       314 ~~~l~~GAd~V~vgra~l  331 (367)
T 3zwt_A          314 LEKIRAGASLVQLYTALT  331 (367)
T ss_dssp             HHHHHHTCSEEEESHHHH
T ss_pred             HHHHHcCCCEEEECHHHH
Confidence            999999999998766654

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=93.47  E-value=0.2  Score=46.15  Aligned_cols=120  Identities=13%  Similarity=0.220  Sum_probs=76.5

Q ss_pred             HHHHHHHHHH-cCceEEEEecc-------CCCCCCCH----HHHHHHHhcCCCCCeecc---ccccCHHH-HHHHHHcCC
Q 018446          199 PVEIARSYEK-GGAACLSILTD-------EKYFKGSF----ENLEAVRSAGVKCPLLCK---EFIVDAWQ-IYYARTKGA  262 (355)
Q Consensus       199 p~~iA~~Ye~-~GAaaISVLTD-------~~fF~GS~----edL~~VR~a~v~lPVLrK---DFIIdpyQ-I~eAr~~GA  262 (355)
                      ..+.|+...+ +|+++|-+.--       ...|+++.    +.++.+|++ +++||..|   ++ -+..+ ...+..+|+
T Consensus       113 ~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~-~~~pv~vk~~~~~-~~~~~~a~~l~~~G~  190 (311)
T 1ep3_A          113 YVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAV-SKVPLYVKLSPNV-TDIVPIAKAVEAAGA  190 (311)
T ss_dssp             HHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHH-CSSCEEEEECSCS-SCSHHHHHHHHHTTC
T ss_pred             HHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHh-cCCCEEEEECCCh-HHHHHHHHHHHHcCC
Confidence            4455555555 89998866432       12355564    556667775 68999987   44 24445 556778999


Q ss_pred             cchHHHH-----------h----------cCCHH----HHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEe
Q 018446          263 DAVLLIA-----------A----------VLPDL----DIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       263 DAVLLIa-----------a----------iL~~~----~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGI  315 (355)
                      |+|.+.-           .          .-++.    .+..+.++...+++..+.  -|+|.+++.+++.+ ||+.|+|
T Consensus       191 d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~-GAd~V~v  269 (311)
T 1ep3_A          191 DGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMA-GASAVAV  269 (311)
T ss_dssp             SEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHH-TCSEEEE
T ss_pred             CEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHc-CCCEEEE
Confidence            9998732           0          11111    123333445555666555  47999999999986 9999999


Q ss_pred             eCCCCC
Q 018446          316 NNRNLE  321 (355)
Q Consensus       316 NNRdL~  321 (355)
                      -..-+.
T Consensus       270 g~~~l~  275 (311)
T 1ep3_A          270 GTANFA  275 (311)
T ss_dssp             CTHHHH
T ss_pred             CHHHHc
Confidence            765443

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=93.39  E-value=0.31  Score=46.36  Aligned_cols=113  Identities=14%  Similarity=0.118  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHH----HHHHHhcCCCCCeeccccccC---HHHHHHHHHcCCcchHHHHh
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFEN----LEAVRSAGVKCPLLCKEFIVD---AWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~ed----L~~VR~a~v~lPVLrKDFIId---pyQI~eAr~~GADAVLLIaa  270 (355)
                      ++ ++|.+..++|+  +.++.- .+  -+.+.    +..+|+. ++.|+-..=|+.+   .-++..+...|+|.|.+-..
T Consensus        39 ~~-~la~av~~aGg--lG~i~~-~~--~~~~~l~~~i~~i~~~-~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~g  111 (326)
T 3bo9_A           39 TP-TLAAAVSEAGG--LGIIGS-GA--MKPDDLRKAISELRQK-TDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAG  111 (326)
T ss_dssp             CH-HHHHHHHHTTS--BEEEEC-TT--CCHHHHHHHHHHHHTT-CSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEESS
T ss_pred             CH-HHHHHHHhCCC--cEEeCC-CC--CCHHHHHHHHHHHHHh-cCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECCC
Confidence            44 46777777774  333321 12  15554    4455653 5567644433322   35677788999999887544


Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcc
Q 018446          271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETF  323 (355)
Q Consensus       271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tf  323 (355)
                       .+    ..+++..++.|+.+++.|++.+++.++.+. |++.|.+.++...+.
T Consensus       112 -~p----~~~~~~l~~~g~~v~~~v~s~~~a~~a~~~-GaD~i~v~g~~~GG~  158 (326)
T 3bo9_A          112 -NP----TKYIRELKENGTKVIPVVASDSLARMVERA-GADAVIAEGMESGGH  158 (326)
T ss_dssp             -CC----HHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TCSCEEEECTTSSEE
T ss_pred             -Cc----HHHHHHHHHcCCcEEEEcCCHHHHHHHHHc-CCCEEEEECCCCCcc
Confidence             33    345677788899999999999999999986 999999998776554

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=93.38  E-value=0.061  Score=49.61  Aligned_cols=74  Identities=26%  Similarity=0.332  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHcCceEEEEe-----------ccCC-------CCCCC------HHHHHHHHhcCCCCCeeccccccCHHH
Q 018446          198 DPVEIARSYEKGGAACLSIL-----------TDEK-------YFKGS------FENLEAVRSAGVKCPLLCKEFIVDAWQ  253 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL-----------TD~~-------fF~GS------~edL~~VR~a~v~lPVLrKDFIIdpyQ  253 (355)
                      ++.++|+.+++.|+++|.|-           |...       .|.|.      ++.+..++++ +++||+.-==|-++-+
T Consensus       177 ~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~-~~ipvia~GGI~~~~d  255 (311)
T 1ep3_A          177 DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQD-VDIPIIGMGGVANAQD  255 (311)
T ss_dssp             CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTT-CSSCEEECSSCCSHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHh-cCCCEEEECCcCCHHH
Confidence            67889999999999999993           1111       13343      4788889885 7999988555558999


Q ss_pred             HHHHHHcCCcchHHHHhcC
Q 018446          254 IYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       254 I~eAr~~GADAVLLIaaiL  272 (355)
                      +.++..+|||+|.+--+++
T Consensus       256 ~~~~l~~GAd~V~vg~~~l  274 (311)
T 1ep3_A          256 VLEMYMAGASAVAVGTANF  274 (311)
T ss_dssp             HHHHHHHTCSEEEECTHHH
T ss_pred             HHHHHHcCCCEEEECHHHH
Confidence            9999999999997655444

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=93.07  E-value=0.079  Score=50.64  Aligned_cols=71  Identities=20%  Similarity=0.153  Sum_probs=57.8

Q ss_pred             HHHHHHHHcCceEEEEeccC--------CCCCC----CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446          201 EIARSYEKGGAACLSILTDE--------KYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI  268 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD~--------~fF~G----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI  268 (355)
                      +.|+..+++||++|.|-.-.        ....|    .++.|..++++ +++||+.-==|-++-.+.+|.++|||+|.+=
T Consensus       161 e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~-~~ipVIa~GGI~~g~Dv~kalalGAdaV~iG  239 (336)
T 1ypf_A          161 EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-ASKPIIADGGIRTNGDVAKSIRFGATMVMIG  239 (336)
T ss_dssp             HHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHT-CSSCEEEESCCCSTHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence            68899999999999992211        01112    58888999886 7999999888999999999999999999987


Q ss_pred             HhcC
Q 018446          269 AAVL  272 (355)
Q Consensus       269 aaiL  272 (355)
                      -++|
T Consensus       240 r~~l  243 (336)
T 1ypf_A          240 SLFA  243 (336)
T ss_dssp             GGGT
T ss_pred             hhhh
Confidence            7777

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=93.05  E-value=0.18  Score=48.47  Aligned_cols=91  Identities=21%  Similarity=0.237  Sum_probs=71.3

Q ss_pred             CCHHHHHHHHHHcCceEEEEec---cCC---CCCC-CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHH
Q 018446          197 FDPVEIARSYEKGGAACLSILT---DEK---YFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLI  268 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLT---D~~---fF~G-S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLI  268 (355)
                      -|..++|+.+++.|++.|.|-.   ++.   ...| .++.+..+|++ +++||+.--=|-++-+..++...| ||+|.+=
T Consensus       229 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~-~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iG  307 (340)
T 3gr7_A          229 KDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRRE-ADIPTGAVGLITSGWQAEEILQNGRADLVFLG  307 (340)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH-TTCCEEEESSCCCHHHHHHHHHTTSCSEEEEC
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHH-cCCcEEeeCCCCCHHHHHHHHHCCCeeEEEec
Confidence            4788999999999999999963   211   1233 57788899986 899999998888999999999999 9999887


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCc
Q 018446          269 AAVLPDLDIRYMTKICKLLGLT  290 (355)
Q Consensus       269 aaiL~~~~L~~L~~~A~~LGLe  290 (355)
                      -++|.+-++  ..++++.+|.+
T Consensus       308 R~~lanPdl--~~ki~~~l~~~  327 (340)
T 3gr7_A          308 RELLRNPYW--PYAAARELGAK  327 (340)
T ss_dssp             HHHHHCTTH--HHHHHHHTTCC
T ss_pred             HHHHhCchH--HHHHHHHCCCC
Confidence            666655444  34677778865

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=93.04  E-value=0.069  Score=47.82  Aligned_cols=87  Identities=17%  Similarity=0.227  Sum_probs=66.0

Q ss_pred             CCCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHc-----C-CcchH
Q 018446          196 DFDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-----G-ADAVL  266 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~-----G-ADAVL  266 (355)
                      +.++.++++.+++.|+..|-+.+   |..+++=+++.++.+++. +++||+.-==|-++-++.+.+.+     | ||+|+
T Consensus       143 ~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~-~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~  221 (241)
T 1qo2_A          143 EIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIE-AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI  221 (241)
T ss_dssp             CCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHH-HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             CCCHHHHHHHHHhCCCCEEEEEeecccccCCcCCHHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence            35899999999999999887743   223455579999999986 79999987444447999999988     9 99999


Q ss_pred             HHHhcCCH-HHHHHHHHH
Q 018446          267 LIAAVLPD-LDIRYMTKI  283 (355)
Q Consensus       267 LIaaiL~~-~~L~~L~~~  283 (355)
                      +.-+++.. -.++++.++
T Consensus       222 vgsal~~~~~~~~~~~~~  239 (241)
T 1qo2_A          222 VGRAFLEGILTVEVMKRY  239 (241)
T ss_dssp             ECHHHHTTSSCHHHHHHH
T ss_pred             eeHHHHcCCCCHHHHHHH
Confidence            88777643 244555444

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=92.98  E-value=0.12  Score=48.47  Aligned_cols=84  Identities=19%  Similarity=0.147  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHcCceEEEEec-cCCCCCCCHHHHHHHHhcCC--CCCeeccccccC-HHHHHHHHHcCCcchHHHHhcCC
Q 018446          198 DPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGV--KCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT-D~~fF~GS~edL~~VR~a~v--~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      ++.++.++. +.||+.|.|.- +.+-|.-+++.+..+++. +  ++|++. .++|. +-++.+.+.+|||+|+..-+++.
T Consensus       171 t~ee~~~A~-~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~-v~~~~pvVa-egGI~t~edv~~l~~~GadgvlVGsal~~  247 (272)
T 3qja_A          171 TEQEADRAL-KAGAKVIGVNARDLMTLDVDRDCFARIAPG-LPSSVIRIA-ESGVRGTADLLAYAGAGADAVLVGEGLVT  247 (272)
T ss_dssp             SHHHHHHHH-HHTCSEEEEESBCTTTCCBCTTHHHHHGGG-SCTTSEEEE-ESCCCSHHHHHHHHHTTCSEEEECHHHHT
T ss_pred             CHHHHHHHH-HCCCCEEEECCCcccccccCHHHHHHHHHh-CcccCEEEE-ECCCCCHHHHHHHHHcCCCEEEEcHHHhC
Confidence            566766655 45999999973 335677788999988875 5  689888 78887 99999999999999999888876


Q ss_pred             HHHHHHHHHHH
Q 018446          274 DLDIRYMTKIC  284 (355)
Q Consensus       274 ~~~L~~L~~~A  284 (355)
                      ..+....++.-
T Consensus       248 a~dp~~~~~~l  258 (272)
T 3qja_A          248 SGDPRAAVADL  258 (272)
T ss_dssp             CSCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            55555544433

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=92.98  E-value=0.12  Score=45.86  Aligned_cols=85  Identities=11%  Similarity=0.150  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHcCceEEEEec-cCCCC-CC-CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHc---CCcchHHHHhc
Q 018446          198 DPVEIARSYEKGGAACLSILT-DEKYF-KG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK---GADAVLLIAAV  271 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT-D~~fF-~G-S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~---GADAVLLIaai  271 (355)
                      ++.+.++.+++.|+..|-|.+ ++..+ +| +++.+.++++. +++||+.-==|-++-.+.+...+   |||+|++--++
T Consensus       150 ~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~-~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al  228 (244)
T 2y88_A          150 DLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADR-TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL  228 (244)
T ss_dssp             EHHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTT-CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred             CHHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence            688999999999999998876 43322 33 67888899885 89999987666667999999988   99999998887


Q ss_pred             CCHH-HHHHHHHH
Q 018446          272 LPDL-DIRYMTKI  283 (355)
Q Consensus       272 L~~~-~L~~L~~~  283 (355)
                      +... .+.++.++
T Consensus       229 ~~~~~~~~~~~~~  241 (244)
T 2y88_A          229 YARRFTLPQALAA  241 (244)
T ss_dssp             HTTSSCHHHHHHH
T ss_pred             HCCCcCHHHHHHH
Confidence            7643 34444443

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=92.89  E-value=0.21  Score=47.57  Aligned_cols=75  Identities=19%  Similarity=0.065  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCC---CCHHHHHHHHhcCCC-CCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~---GS~edL~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      || .+|+..++.|++++=.+..+---+   -+.++|..+++...+ +||++-==|-+|-+.++|..+|||+||+--+|..
T Consensus       134 D~-~~ak~l~~~G~~aVmPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~  212 (268)
T 2htm_A          134 DL-VLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAE  212 (268)
T ss_dssp             CH-HHHHHHHHHTCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHT
T ss_pred             CH-HHHHHHHhcCCCEEEecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence            56 699999999999997666653221   147789999882368 9999977778899999999999999999888876

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=92.84  E-value=0.089  Score=52.71  Aligned_cols=74  Identities=15%  Similarity=0.118  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHcCceEEEEec-cC---------CCCC---C------CHHHHHHHHhcCC--CCCeeccccccCHHHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILT-DE---------KYFK---G------SFENLEAVRSAGV--KCPLLCKEFIVDAWQIYY  256 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT-D~---------~fF~---G------S~edL~~VR~a~v--~lPVLrKDFIIdpyQI~e  256 (355)
                      +..++|+..+++||++|.|-. -.         .-++   |      +++.+..++++ +  ++||+.-==|-++-++++
T Consensus       284 ~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~-v~~~iPIIg~GGI~s~eDa~e  362 (415)
T 3i65_A          284 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNY-TNKQIPIIASGGIFSGLDALE  362 (415)
T ss_dssp             HHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHH-TTTCSCEEECSSCCSHHHHHH
T ss_pred             HHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHH-hCCCCCEEEECCCCCHHHHHH
Confidence            368899999999999998752 11         0123   2      35788888886 6  799999999999999999


Q ss_pred             HHHcCCcchHHHHhcC
Q 018446          257 ARTKGADAVLLIAAVL  272 (355)
Q Consensus       257 Ar~~GADAVLLIaaiL  272 (355)
                      +..+|||+|.+--+++
T Consensus       363 ~l~aGAd~VqIgra~l  378 (415)
T 3i65_A          363 KIEAGASVCQLYSCLV  378 (415)
T ss_dssp             HHHHTEEEEEESHHHH
T ss_pred             HHHcCCCEEEEcHHHH
Confidence            9999999998866665

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=92.82  E-value=0.05  Score=51.92  Aligned_cols=114  Identities=16%  Similarity=0.191  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHH-HHHHHhcCCCCCee---------cccc----ccC-HHHHHHHHHcC
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFEN-LEAVRSAGVKCPLL---------CKEF----IVD-AWQIYYARTKG  261 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~ed-L~~VR~a~v~lPVL---------rKDF----IId-pyQI~eAr~~G  261 (355)
                      .|+..+......+|++|  ||.|+.|-    ++ +...+....++|++         +.|+    .++ .|.+.+|..+|
T Consensus        48 ~~~k~lv~~~~~~~~~a--vl~~~g~~----~~a~~~~~~~~~~~glil~l~~~~~l~~~~~~~~l~~~~~~ve~a~~~G  121 (304)
T 1to3_A           48 TDFKVNAAKILSPYASA--VLLDQQFC----YRQAVEQNAVAKSCAMIVAADDFIPGNGIPVDNVVLDKKINAQAVKRDG  121 (304)
T ss_dssp             HHHHHHHHHHHGGGCSE--EEECTTTT----HHHHHHTTCSCTTSEEEEECEEEEEETTEEEEEEEECSSCCHHHHHHTT
T ss_pred             hhHHHHHHHHHhcCCCE--EEeCHHHH----HHHhhcccccCCCCcEEEEECCCCCCCCCccchhhccCchhHHHHHHcC
Confidence            46777888888888887  56666532    11 00011112344544         4333    333 68999999999


Q ss_pred             CcchHHHHhcCCH-------HHHHHHHHHHHHcCCcEEEEeC--------------CHHH-HHHHhccCCCeEEEeeC
Q 018446          262 ADAVLLIAAVLPD-------LDIRYMTKICKLLGLTALVEVH--------------DERE-MDRVLGIEGIELIGINN  317 (355)
Q Consensus       262 ADAVLLIaaiL~~-------~~L~~L~~~A~~LGLeaLVEVH--------------~~eE-LerAl~l~ga~iIGINN  317 (355)
                      ||+|-+.+.+=++       +.+.++.+.|+++||..++|+-              ...+ +..+.++ |+++|++.-
T Consensus       122 AdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~l-GaD~iKv~~  198 (304)
T 1to3_A          122 AKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDS-GADLYKVEM  198 (304)
T ss_dssp             CCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTS-SCSEEEECC
T ss_pred             CCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHc-CCCEEEeCC
Confidence            9999755544443       5788889999999999999983              2345 5556665 999999876

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=92.77  E-value=0.14  Score=50.99  Aligned_cols=123  Identities=11%  Similarity=0.123  Sum_probs=56.5

Q ss_pred             CCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecccc--------ccC-----HHHHHHHHH
Q 018446          193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEF--------IVD-----AWQIYYART  259 (355)
Q Consensus       193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDF--------IId-----pyQI~eAr~  259 (355)
                      +.++.+..+.++.+.+.+...+-|+.+...+-|-...-.-++.  ..-|+.+||+        .+.     ..++..+..
T Consensus       170 v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~--~~~~~~~~D~~~~l~vga~ig~~~~~~~~a~~l~~  247 (494)
T 1vrd_A          170 APPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSV--IEHPNAARDEKGRLLVGAAVGTSPETMERVEKLVK  247 (494)
T ss_dssp             ---------------------------------------CHHH--HTCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhh--hccccccccchhhhccccccCcCHhHHHHHHHHHH
Confidence            4556678889999999999999999888778886654443443  2446667775        122     468888899


Q ss_pred             cCCcchHHHHhc-CCHHHHHHHHHHHHHc-CCcEEE-EeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          260 KGADAVLLIAAV-LPDLDIRYMTKICKLL-GLTALV-EVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       260 ~GADAVLLIaai-L~~~~L~~L~~~A~~L-GLeaLV-EVH~~eELerAl~l~ga~iIGINNR  318 (355)
                      +|+|+|.+..+. .....++.+-.+...+ |+-.++ .+.+.+|+.++.++ |++.|-|.|.
T Consensus       248 aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~-G~d~I~v~~~  308 (494)
T 1vrd_A          248 AGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA-GADAVKVGVG  308 (494)
T ss_dssp             TTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT-TCSEEEECSS
T ss_pred             hCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc-CCCEEEEcCC
Confidence            999998874443 2333444444555555 676654 59999999999986 9999999663

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=92.72  E-value=0.45  Score=44.79  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=78.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHH----HHHHHhcCCCCCeeccccccC--------HHHH
Q 018446          187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFEN----LEAVRSAGVKCPLLCKEFIVD--------AWQI  254 (355)
Q Consensus       187 SPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~ed----L~~VR~a~v~lPVLrKDFIId--------pyQI  254 (355)
                      +|-.|+ .   ++ ++|.+..++|+  +.++....  ..+.+.    +..+|+. .+.|+-. .++++        ..++
T Consensus        21 apM~gv-s---~~-~la~av~~aGg--lG~i~~~~--~~s~~~l~~~i~~i~~~-~~~p~~v-~l~v~~~~~~~~~~~~~   89 (328)
T 2gjl_A           21 GGMQWV-G---RA-EMAAAVANAGG--LATLSALT--QPSPEALAAEIARCREL-TDRPFGV-NLTLLPTQKPVPYAEYR   89 (328)
T ss_dssp             CCCTTT-C---SH-HHHHHHHHTTS--BCEEETTT--SSSHHHHHHHHHHHHHH-CSSCCEE-EEEECCCSSCCCHHHHH
T ss_pred             CCCCCC-C---cH-HHHHHHHHCCC--eEEeCCCC--CCCHHHHHHHHHHHHHh-cCCCeEE-EEeccccccCccHHHHH
Confidence            455452 2   45 47777777774  33332221  123555    4556664 5566533 33443        3678


Q ss_pred             HHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446          255 YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNL  320 (355)
Q Consensus       255 ~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL  320 (355)
                      ..+..+|+|.|.+-.. .+    .++++..++.|+..++-|++.+++.++... |++.|.+.++.-
T Consensus        90 ~~~~~~g~d~V~~~~g-~p----~~~~~~l~~~gi~vi~~v~t~~~a~~~~~~-GaD~i~v~g~~~  149 (328)
T 2gjl_A           90 AAIIEAGIRVVETAGN-DP----GEHIAEFRRHGVKVIHKCTAVRHALKAERL-GVDAVSIDGFEC  149 (328)
T ss_dssp             HHHHHTTCCEEEEEES-CC----HHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TCSEEEEECTTC
T ss_pred             HHHHhcCCCEEEEcCC-Cc----HHHHHHHHHcCCCEEeeCCCHHHHHHHHHc-CCCEEEEECCCC
Confidence            8899999999887654 23    356677788899999999999999999886 999999987754

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=92.62  E-value=0.038  Score=52.90  Aligned_cols=90  Identities=9%  Similarity=0.039  Sum_probs=62.9

Q ss_pred             CCCHHHHHHHHhcCCCCCee-cccccc-CHHHHHHHHHcCCcchHHHHhcCCH----HHHHHHHHHHHHcCCcEEEEeCC
Q 018446          224 KGSFENLEAVRSAGVKCPLL-CKEFIV-DAWQIYYARTKGADAVLLIAAVLPD----LDIRYMTKICKLLGLTALVEVHD  297 (355)
Q Consensus       224 ~GS~edL~~VR~a~v~lPVL-rKDFII-dpyQI~eAr~~GADAVLLIaaiL~~----~~L~~L~~~A~~LGLeaLVEVH~  297 (355)
                      +.+++.+..+++. +++||+ -=+..| ++-++.+++.+|||+|++.-+++..    +.++.|.+..+        +..+
T Consensus       193 ~~~~~ll~~i~~~-~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~--------~~~~  263 (297)
T 4adt_A          193 RAPIDLILLTRKL-KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVS--------NFNN  263 (297)
T ss_dssp             TCCHHHHHHHHHH-TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHH--------TTTC
T ss_pred             CCCHHHHHHHHHh-cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHH--------hhCC
Confidence            4467888888885 789986 478888 9999999999999999998888842    24555555443        3467


Q ss_pred             HHHHHHHhccCCCeEEEeeCCCCCc
Q 018446          298 EREMDRVLGIEGIELIGINNRNLET  322 (355)
Q Consensus       298 ~eELerAl~l~ga~iIGINNRdL~T  322 (355)
                      .+++..+-.--|-.+.|||..+|..
T Consensus       264 ~~~~~~i~~~~~~~~~~~~~~~~~~  288 (297)
T 4adt_A          264 PKILLNVSLGLGKAMHGNTKVSNKW  288 (297)
T ss_dssp             HHHHHHTTTTCCCCCCCCCC-----
T ss_pred             HHHHHHHHhhcccCCCCCCcccccc
Confidence            7776665432266799999887754

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=92.56  E-value=0.54  Score=45.22  Aligned_cols=92  Identities=14%  Similarity=0.216  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~~  276 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.++...| +|.|.+ ...+=+-.+
T Consensus       206 a~~~~~~l~~~~i~~i----EqP~~~~~~~~~~~l~~~-~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~  280 (384)
T 2pgw_A          206 AINMCRKLEKYDIEFI----EQPTVSWSIPAMAHVREK-VGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQP  280 (384)
T ss_dssp             HHHHHHHHGGGCCSEE----ECCSCTTCHHHHHHHHHH-CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHH
T ss_pred             HHHHHHHHHhcCCCEE----eCCCChhhHHHHHHHHhh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHHH
Confidence            4467788888887765    344556789999999986 899999999999999999988876 788888 444435567


Q ss_pred             HHHHHHHHHHcCCcEEEEe
Q 018446          277 IRYMTKICKLLGLTALVEV  295 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEV  295 (355)
                      ...+.++|+..|+.+.+-.
T Consensus       281 ~~~i~~~A~~~g~~~~~~~  299 (384)
T 2pgw_A          281 MMKAAAVAEAAGLKICIHS  299 (384)
T ss_dssp             HHHHHHHHHHTTCCEEECC
T ss_pred             HHHHHHHHHHCCCeEeecc
Confidence            7889999999999976643

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=92.56  E-value=0.56  Score=41.52  Aligned_cols=117  Identities=15%  Similarity=0.088  Sum_probs=77.9

Q ss_pred             CCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHh----cCCCCCeecccc----ccCHHHHHHHHHcCCcchHH
Q 018446          196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS----AGVKCPLLCKEF----IVDAWQIYYARTKGADAVLL  267 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~----a~v~lPVLrKDF----IIdpyQI~eAr~~GADAVLL  267 (355)
                      +.++.+..+...+.|..+|-+..+.-.+.-+.+++..+|+    ++..+..+.-.+    =.-.-.|..|..+||..|.+
T Consensus        29 ~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~  108 (257)
T 3lmz_A           29 NFDLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVG  108 (257)
T ss_dssp             TSCHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEe
Confidence            3578888888888999999888762113445666666553    233333322111    11133577899999999886


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCcEEEEeC--------CHHHHHHHhccCCCeEEEee
Q 018446          268 IAAVLPDLDIRYMTKICKLLGLTALVEVH--------DEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       268 IaaiL~~~~L~~L~~~A~~LGLeaLVEVH--------~~eELerAl~l~ga~iIGIN  316 (355)
                      ..   +.+.|+++.++|.+.|+...+|-|        +.+++.+.++. .-+-+|++
T Consensus       109 ~p---~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~ll~~-~~p~vg~~  161 (257)
T 3lmz_A          109 VP---NYELLPYVDKKVKEYDFHYAIHLHGPDIKTYPDATDVWVHTKD-LDPRIGMC  161 (257)
T ss_dssp             EE---CGGGHHHHHHHHHHHTCEEEEECCCTTCSSSCSHHHHHHHHTT-SCTTEEEE
T ss_pred             cC---CHHHHHHHHHHHHHcCCEEEEecCCCcccccCCHHHHHHHHHh-CCCCccEE
Confidence            42   357899999999999999999999        46778777763 22345553

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=92.55  E-value=0.26  Score=50.42  Aligned_cols=92  Identities=22%  Similarity=0.125  Sum_probs=73.2

Q ss_pred             CCHHHHHHHHHHcCceEEEEecc----CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHH-cCCcchHHHHhc
Q 018446          197 FDPVEIARSYEKGGAACLSILTD----EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAVLLIAAV  271 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD----~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~-~GADAVLLIaai  271 (355)
                      .++.++|+.+++.||+.|- +|+    ..+-+=+++.++.++++ +++||+.-==|-++-++.++.. .|||+|+.=-++
T Consensus       452 ~~~~e~a~~~~~~Ga~~il-~t~~~~dG~~~G~d~~li~~l~~~-~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~  529 (555)
T 1jvn_A          452 LGVWELTRACEALGAGEIL-LNCIDKDGSNSGYDLELIEHVKDA-VKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMF  529 (555)
T ss_dssp             EEHHHHHHHHHHTTCCEEE-ECCGGGTTTCSCCCHHHHHHHHHH-CSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHH
T ss_pred             CCHHHHHHHHHHcCCCEEE-EeCCCCCCCCCCCCHHHHHHHHHh-CCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHH
Confidence            5789999999999999995 455    33333368888999986 8999999888889999999997 899999876666


Q ss_pred             CCH-HHHHHHHHHHHHcCCc
Q 018446          272 LPD-LDIRYMTKICKLLGLT  290 (355)
Q Consensus       272 L~~-~~L~~L~~~A~~LGLe  290 (355)
                      +.. -.++++.++...-|+.
T Consensus       530 ~~~~~~~~e~~~~l~~~gi~  549 (555)
T 1jvn_A          530 HRGEFTVNDVKEYLLEHGLK  549 (555)
T ss_dssp             HTTSCCHHHHHHHHHHTTCC
T ss_pred             HcCCCCHHHHHHHHHHCCCc
Confidence            554 3577777888887764

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=92.47  E-value=0.3  Score=47.33  Aligned_cols=89  Identities=17%  Similarity=0.281  Sum_probs=69.7

Q ss_pred             CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcCC--HHHHHHHHHHHHHc--CCcEEEE--eC
Q 018446          226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVLP--DLDIRYMTKICKLL--GLTALVE--VH  296 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL~--~~~L~~L~~~A~~L--GLeaLVE--VH  296 (355)
                      +++++..+|+. +++||+-|-. .++-.+..+..+|||+|.+.-   ..++  ...+..+.++...+  .+..+..  |+
T Consensus       213 ~~~~i~~l~~~-~~~pv~vK~~-~~~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~  290 (370)
T 1gox_A          213 SWKDVAWLQTI-TSLPILVKGV-ITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVR  290 (370)
T ss_dssp             CHHHHHHHHHH-CCSCEEEECC-CSHHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCC
T ss_pred             hHHHHHHHHHH-hCCCEEEEec-CCHHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            57899999986 8999999875 678899999999999998732   1111  12555666666667  5766664  89


Q ss_pred             CHHHHHHHhccCCCeEEEeeC
Q 018446          297 DEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       297 ~~eELerAl~l~ga~iIGINN  317 (355)
                      +.+++.+++.+ ||+.++|-.
T Consensus       291 ~~~D~~k~l~~-GAdaV~iGr  310 (370)
T 1gox_A          291 RGTDVFKALAL-GAAGVFIGR  310 (370)
T ss_dssp             SHHHHHHHHHH-TCSEEEECH
T ss_pred             CHHHHHHHHHc-CCCEEeecH
Confidence            99999999997 999999864

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=92.46  E-value=0.43  Score=43.51  Aligned_cols=74  Identities=16%  Similarity=0.073  Sum_probs=58.5

Q ss_pred             HHHHHHHHcCceEEEE----ecc-CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446          201 EIARSYEKGGAACLSI----LTD-EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL  275 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISV----LTD-~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~  275 (355)
                      +.|+..++.||+.|.+    +|+ .+-+..+++.+..+++.  ++||+.-==|-++-++.++..+|||+|++--++..+.
T Consensus       140 eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~p~  217 (232)
T 3igs_A          140 DDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA--GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITRLE  217 (232)
T ss_dssp             HHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHCHH
T ss_pred             HHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcCHH
Confidence            5677788899999975    222 22467789999999884  8999976555589999999999999999988877664


Q ss_pred             H
Q 018446          276 D  276 (355)
Q Consensus       276 ~  276 (355)
                      +
T Consensus       218 ~  218 (232)
T 3igs_A          218 H  218 (232)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=92.21  E-value=0.58  Score=43.83  Aligned_cols=115  Identities=18%  Similarity=0.185  Sum_probs=69.0

Q ss_pred             CHHHHHHHHHHcCceEEEEe-------------------------c---cCCC------CCCCHHHHHHHHhcCCCCCee
Q 018446          198 DPVEIARSYEKGGAACLSIL-------------------------T---DEKY------FKGSFENLEAVRSAGVKCPLL  243 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL-------------------------T---D~~f------F~GS~edL~~VR~a~v~lPVL  243 (355)
                      ++.+..++. +.||++|.+-                         |   ....      ...+++.+..+++. +++||+
T Consensus       134 ~~~e~~~a~-~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~-~~iPvi  211 (305)
T 2nv1_A          134 DLGEATRRI-AEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKD-GKLPVV  211 (305)
T ss_dssp             SHHHHHHHH-HTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHH-TSCSSC
T ss_pred             CHHHHHHHH-HCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHHHh-cCCCEE
Confidence            567777776 7899999982                         1   1111      34678889999885 789987


Q ss_pred             -cccccc-CHHHHHHHHHcCCcchHHHHhcCCH----HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          244 -CKEFIV-DAWQIYYARTKGADAVLLIAAVLPD----LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       244 -rKDFII-dpyQI~eAr~~GADAVLLIaaiL~~----~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                       -=...| ++-++.++..+|||+|.+--+++..    ..++.|.+..+.        ..+.+.+...-+.-|..+-|||.
T Consensus       212 ~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~  283 (305)
T 2nv1_A          212 NFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTH--------FTDYKLIAELSKELGTAMKGIEI  283 (305)
T ss_dssp             EEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT--------TTCHHHHHHHTSCC---------
T ss_pred             EEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHHHHHH--------hcChhhHHHHHHHhhhhhcCCCh
Confidence             246667 8999999999999999999998842    234555544332        33566665544433667888887


Q ss_pred             CCCCc
Q 018446          318 RNLET  322 (355)
Q Consensus       318 RdL~T  322 (355)
                      ..|..
T Consensus       284 ~~~~~  288 (305)
T 2nv1_A          284 SNLLP  288 (305)
T ss_dssp             -----
T ss_pred             hhcch
Confidence            77743

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=92.12  E-value=0.087  Score=49.74  Aligned_cols=125  Identities=15%  Similarity=0.234  Sum_probs=79.5

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec---cC----CCCC--------------CCHHHHHHH
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT---DE----KYFK--------------GSFENLEAV  233 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT---D~----~fF~--------------GS~edL~~V  233 (355)
                      ++.++|.=+=--=|+..      .-.++++.++++||+.|.+=.   ||    ...+              .-++.++.+
T Consensus        18 ~~~ali~yi~aGdP~~~------~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~   91 (271)
T 3nav_A           18 QQGAFVPFVTIGDPNPE------QSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQI   91 (271)
T ss_dssp             TBCEEEEEEETTSSCHH------HHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHH------HHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            45577776622222211      235788899999999998853   21    1122              225677888


Q ss_pred             HhcCCCCCeecc-c---cccCHHH--HHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe--C-CHHHHHHH
Q 018446          234 RSAGVKCPLLCK-E---FIVDAWQ--IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV--H-DEREMDRV  304 (355)
Q Consensus       234 R~a~v~lPVLrK-D---FIIdpyQ--I~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV--H-~~eELerA  304 (355)
                      |+..+++|++-. .   +...++.  +.+++.+|+|++++.  =|+.++..++.+.|++.|++.+.=+  . +.+.++++
T Consensus        92 r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip--Dlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i  169 (271)
T 3nav_A           92 RARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIA--DVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAV  169 (271)
T ss_dssp             HHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEET--TSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHH
T ss_pred             HhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH
Confidence            864478997542 1   1122223  778899999997663  4666789999999999999854333  2 35667776


Q ss_pred             hcc
Q 018446          305 LGI  307 (355)
Q Consensus       305 l~l  307 (355)
                      .+.
T Consensus       170 ~~~  172 (271)
T 3nav_A          170 AQL  172 (271)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=92.12  E-value=0.084  Score=51.58  Aligned_cols=81  Identities=15%  Similarity=0.125  Sum_probs=59.9

Q ss_pred             CCCCCCHHHH---HHHHHHcC-ceEEEEe------------cc------CCCCCC---------CHHHHHHHHhcCCCCC
Q 018446          193 LREDFDPVEI---ARSYEKGG-AACLSIL------------TD------EKYFKG---------SFENLEAVRSAGVKCP  241 (355)
Q Consensus       193 I~~~~Dp~~i---A~~Ye~~G-AaaISVL------------TD------~~fF~G---------S~edL~~VR~a~v~lP  241 (355)
                      |++++|..++   |+.++++| |++|++-            +.      ...++|         +++.+..++++..++|
T Consensus       200 i~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ip  279 (354)
T 4ef8_A          200 MPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKL  279 (354)
T ss_dssp             ECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSE
T ss_pred             ecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCC
Confidence            3445666555   55556887 9999861            11      134555         5888999988623799


Q ss_pred             eeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       242 VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      |+.-==|-++-++.++..+|||+|.+--+++-
T Consensus       280 II~~GGI~s~~da~~~l~aGAd~V~vgra~l~  311 (354)
T 4ef8_A          280 IFGCGGVYTGEDAFLHVLAGASMVQVGTALQE  311 (354)
T ss_dssp             EEEESCCCSHHHHHHHHHHTEEEEEECHHHHH
T ss_pred             EEEECCcCCHHHHHHHHHcCCCEEEEhHHHHH
Confidence            99988899999999999999999987666653

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=92.04  E-value=0.47  Score=46.20  Aligned_cols=84  Identities=17%  Similarity=0.131  Sum_probs=58.0

Q ss_pred             HHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHH-HHHHcCCcEEE-EeCCHHHHHHHhcc
Q 018446          230 LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTK-ICKLLGLTALV-EVHDEREMDRVLGI  307 (355)
Q Consensus       230 L~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~-~A~~LGLeaLV-EVH~~eELerAl~l  307 (355)
                      ++++|+. ..+|+-..=.+-+.-++..+..+|||.|.|-.+.-....+.+.++ +.+.+++..++ .|++.++++++.++
T Consensus        87 I~~vk~~-~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a  165 (361)
T 3khj_A           87 VLKVKNS-GGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN  165 (361)
T ss_dssp             HHHHHHT-TCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT
T ss_pred             HHHHHhc-cCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc
Confidence            4445553 566754443333366778888999998877544433334444444 44556999998 99999999999997


Q ss_pred             CCCeEEEe
Q 018446          308 EGIELIGI  315 (355)
Q Consensus       308 ~ga~iIGI  315 (355)
                       |++.|.|
T Consensus       166 -GaD~I~V  172 (361)
T 3khj_A          166 -GADGIKV  172 (361)
T ss_dssp             -TCSEEEE
T ss_pred             -CcCEEEE
Confidence             9999988

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=91.97  E-value=0.061  Score=50.13  Aligned_cols=73  Identities=12%  Similarity=0.060  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHcCceEEEEec--------c----CC---------CCCC------CHHHHHHHHhcCC--CCCeecccccc
Q 018446          199 PVEIARSYEKGGAACLSILT--------D----EK---------YFKG------SFENLEAVRSAGV--KCPLLCKEFIV  249 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLT--------D----~~---------fF~G------S~edL~~VR~a~v--~lPVLrKDFII  249 (355)
                      ..++|+..+++||++|.|-.        |    ..         .+.|      +++.+..++++ +  ++||+.-==|-
T Consensus       174 ~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~-~~~~ipvi~~GGI~  252 (311)
T 1jub_A          174 FDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTR-LKPEIQIIGTGGIE  252 (311)
T ss_dssp             HHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTT-SCTTSEEEEESSCC
T ss_pred             HHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHh-cCCCCCEEEECCCC
Confidence            34569999999999998732        2    00         1114      36888889885 7  89999877777


Q ss_pred             CHHHHHHHHHcCCcchHHHHhcC
Q 018446          250 DAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       250 dpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      ++-++.++..+|||+|.+=-+++
T Consensus       253 ~~~da~~~l~~GAd~V~vg~~~l  275 (311)
T 1jub_A          253 TGQDAFEHLLCGATMLQIGTALH  275 (311)
T ss_dssp             SHHHHHHHHHHTCSEEEECHHHH
T ss_pred             CHHHHHHHHHcCCCEEEEchHHH
Confidence            99999999999999998766666

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=91.95  E-value=0.36  Score=45.51  Aligned_cols=116  Identities=15%  Similarity=0.099  Sum_probs=69.8

Q ss_pred             HHHHHHHHH--HcCceEEEEeccCCCCCCC---------HHHHHHHHhcCC---------CCCeeccccc-cCH---HH-
Q 018446          199 PVEIARSYE--KGGAACLSILTDEKYFKGS---------FENLEAVRSAGV---------KCPLLCKEFI-VDA---WQ-  253 (355)
Q Consensus       199 p~~iA~~Ye--~~GAaaISVLTD~~fF~GS---------~edL~~VR~a~v---------~lPVLrKDFI-Idp---yQ-  253 (355)
                      +.+++++.+  ..|+++|-+..-.....|.         .+.+..||++ +         ++||+.|=-. ++.   .+ 
T Consensus       152 ~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~-~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~  230 (336)
T 1f76_A          152 KDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNK-QNDLQAMHHKYVPIAVKIAPDLSEEELIQV  230 (336)
T ss_dssp             HHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHH-HHHHHHHHTSCCCEEEECCSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HHhhhhcccccCceEEEecCCCCHHHHHHH
Confidence            444444443  2268887765422222221         3667778875 5         8999888110 111   22 


Q ss_pred             HHHHHHcCCcchHHHHhc-----------------CC-----HHHHHHHHHHHHHc--CCcEEE--EeCCHHHHHHHhcc
Q 018446          254 IYYARTKGADAVLLIAAV-----------------LP-----DLDIRYMTKICKLL--GLTALV--EVHDEREMDRVLGI  307 (355)
Q Consensus       254 I~eAr~~GADAVLLIaai-----------------L~-----~~~L~~L~~~A~~L--GLeaLV--EVH~~eELerAl~l  307 (355)
                      ...+..+|+|+|.+.-..                 ++     +..+..+..+.+.+  ++..+.  -|+|.+++++++.+
T Consensus       231 a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~  310 (336)
T 1f76_A          231 ADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAA  310 (336)
T ss_dssp             HHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHC
Confidence            245567899999875332                 11     11234444555556  566655  48999999999997


Q ss_pred             CCCeEEEee
Q 018446          308 EGIELIGIN  316 (355)
Q Consensus       308 ~ga~iIGIN  316 (355)
                       ||+.|+|-
T Consensus       311 -GAd~V~ig  318 (336)
T 1f76_A          311 -GASLVQIY  318 (336)
T ss_dssp             -TCSEEEES
T ss_pred             -CCCEEEee
Confidence             99999884

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=91.94  E-value=0.93  Score=39.81  Aligned_cols=64  Identities=16%  Similarity=0.110  Sum_probs=45.3

Q ss_pred             HHHHHHHHHcCCcchHHHHhcCC--------HHHHHHHHHHHHHcCCcEEEEeC--------CHHHHHHHhccCCCeEEE
Q 018446          251 AWQIYYARTKGADAVLLIAAVLP--------DLDIRYMTKICKLLGLTALVEVH--------DEREMDRVLGIEGIELIG  314 (355)
Q Consensus       251 pyQI~eAr~~GADAVLLIaaiL~--------~~~L~~L~~~A~~LGLeaLVEVH--------~~eELerAl~l~ga~iIG  314 (355)
                      ...|..|..+||+.|.+....-+        -+.|.++.++|.+.|+...+|-|        +.+++.+.++.-+ +-+|
T Consensus        88 ~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~l~~~v~-~~~g  166 (272)
T 2q02_A           88 EGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREAG-SPFK  166 (272)
T ss_dssp             HHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHHHHHT-CCCE
T ss_pred             HHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCHHHHHHHHHHhC-cCeE
Confidence            45677788999998876433211        45678889999999999999998        4677777665323 4455


Q ss_pred             e
Q 018446          315 I  315 (355)
Q Consensus       315 I  315 (355)
                      +
T Consensus       167 ~  167 (272)
T 2q02_A          167 V  167 (272)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=91.85  E-value=0.21  Score=48.14  Aligned_cols=73  Identities=10%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCC--CCCC---------CHHHHHHHHhcCC-CCCeeccccccCHHHHHHHHHcCCcch
Q 018446          198 DPVEIARSYEKGGAACLSILTDEK--YFKG---------SFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAV  265 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~--fF~G---------S~edL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~~GADAV  265 (355)
                      +..++|+.++++|+++|.|-.-..  .|.|         .++.+..++++ + ++||+.-==|-++-++.++.. |||+|
T Consensus       145 ~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~-~~~iPVianGgI~s~eda~~~l~-GaD~V  222 (350)
T 3b0p_A          145 GLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGD-FPQLTFVTNGGIRSLEEALFHLK-RVDGV  222 (350)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHH-CTTSEEEEESSCCSHHHHHHHHT-TSSEE
T ss_pred             HHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHh-CCCCeEEEECCcCCHHHHHHHHh-CCCEE
Confidence            567899999999999999854321  2333         58889999986 7 899999888889999999987 99999


Q ss_pred             HHHHhcC
Q 018446          266 LLIAAVL  272 (355)
Q Consensus       266 LLIaaiL  272 (355)
                      .+=-++|
T Consensus       223 ~iGRa~l  229 (350)
T 3b0p_A          223 MLGRAVY  229 (350)
T ss_dssp             EECHHHH
T ss_pred             EECHHHH
Confidence            7744443

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=91.83  E-value=0.13  Score=48.67  Aligned_cols=74  Identities=14%  Similarity=0.132  Sum_probs=58.0

Q ss_pred             CHHHHHHHHHHcCceEEEEecc---CC---------CC---CC------CHHHHHHHHhcCC--CCCeeccccccCHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTD---EK---------YF---KG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQI  254 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD---~~---------fF---~G------S~edL~~VR~a~v--~lPVLrKDFIIdpyQI  254 (355)
                      |..++|+..+++|+++|.|-.-   ..         -+   .|      +++.+..++++ +  ++||+.-==|-++-++
T Consensus       226 ~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~-~~~~ipVi~~GGI~~~~da  304 (336)
T 1f76_A          226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLE-LNGRLPIIGVGGIDSVIAA  304 (336)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHH-HTTSSCEEEESSCCSHHHH
T ss_pred             HHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHH-hCCCCCEEEECCCCCHHHH
Confidence            4577899999999999997411   00         12   23      25788888886 6  8999999999999999


Q ss_pred             HHHHHcCCcchHHHHhcC
Q 018446          255 YYARTKGADAVLLIAAVL  272 (355)
Q Consensus       255 ~eAr~~GADAVLLIaaiL  272 (355)
                      .++...|||+|.+=-++|
T Consensus       305 ~~~l~~GAd~V~igr~~l  322 (336)
T 1f76_A          305 REKIAAGASLVQIYSGFI  322 (336)
T ss_dssp             HHHHHHTCSEEEESHHHH
T ss_pred             HHHHHCCCCEEEeeHHHH
Confidence            999999999998766555

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=91.79  E-value=0.22  Score=47.89  Aligned_cols=116  Identities=15%  Similarity=0.078  Sum_probs=82.0

Q ss_pred             HHHHHHHHcCceEEEEeccCCC-------------CCCCHHHHHHH-Hh---cCCCCCeeccccccCH-----HHHHHHH
Q 018446          201 EIARSYEKGGAACLSILTDEKY-------------FKGSFENLEAV-RS---AGVKCPLLCKEFIVDA-----WQIYYAR  258 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD~~f-------------F~GS~edL~~V-R~---a~v~lPVLrKDFIIdp-----yQI~eAr  258 (355)
                      --|+.-+++||+-|=++--..|             |+-+.+-.... ++   ...++||++-=.-.||     +=+.+-+
T Consensus        39 lsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk  118 (286)
T 2p10_A           39 LSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELK  118 (286)
T ss_dssp             HHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHH
T ss_pred             hhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHH
Confidence            4678888999999988765544             32222222222 21   1126788765222332     3346678


Q ss_pred             HcCCcchHHHHh----------------cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          259 TKGADAVLLIAA----------------VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       259 ~~GADAVLLIaa----------------iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR  318 (355)
                      .+|+.+| +...                =|+-++..++++.|+++||..++-|.|.+|...+..+ |+++|.++==
T Consensus       119 ~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~v~~~eeA~amA~a-gpDiI~~h~g  192 (286)
T 2p10_A          119 EIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYVFSPEDAVAMAKA-GADILVCHMG  192 (286)
T ss_dssp             HHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEECSHHHHHHHHHH-TCSEEEEECS
T ss_pred             HhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHc-CCCEEEECCC
Confidence            8999999 5544                2466788899999999999999999999999999887 9999988744

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=91.78  E-value=0.48  Score=47.84  Aligned_cols=154  Identities=14%  Similarity=0.139  Sum_probs=111.7

Q ss_pred             CceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec-cCCCCCCCHHHHHHHHhc-CCCCCeeccccccCHHH
Q 018446          176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSA-GVKCPLLCKEFIVDAWQ  253 (355)
Q Consensus       176 ~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT-D~~fF~GS~edL~~VR~a-~v~lPVLrKDFIIdpyQ  253 (355)
                      ..-+++|+             .|..++.++.. .||..|.|.- |-+-|.=+++....++.. ..+.++++-==|-.|-|
T Consensus       157 gm~~LvEv-------------h~~eE~~~A~~-lga~iIGinnr~L~t~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~ed  222 (452)
T 1pii_A          157 EMGVLTEV-------------SNEEEQERAIA-LGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQ  222 (452)
T ss_dssp             TCEEEEEE-------------CSHHHHHHHHH-TTCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHH
T ss_pred             CCeEEEEe-------------CCHHHHHHHHH-CCCCEEEEeCCCCCCCCCCHHHHHHHHHhCCCCCeEEEECCCCCHHH
Confidence            35789998             26677766654 6999999963 333466677777776653 12567888877888999


Q ss_pred             HHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhh
Q 018446          254 IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL  333 (355)
Q Consensus       254 I~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L  333 (355)
                      +..++.+ |||||.=-+++..++....++--. .|.--+.-+.+.+++..|.++ ||+.+|..=-.-.--.|+++++.+|
T Consensus       223 v~~~~~~-a~avLVGealmr~~d~~~~~~~l~-~~~~KICGit~~eda~~a~~~-Gad~iGfIf~~~SpR~V~~~~a~~i  299 (452)
T 1pii_A          223 VRELSHF-ANGFLIGSALMAHDDLHAAVRRVL-LGENKVCGLTRGQDAKAAYDA-GAIYGGLIFVATSPRCVNVEQAQEV  299 (452)
T ss_dssp             HHHHTTT-CSEEEECHHHHTCSCHHHHHHHHH-HCSCEECCCCSHHHHHHHHHH-TCSEEEEECCTTCTTBCCHHHHHHH
T ss_pred             HHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHH-HHhccccCCCcHHHHHHHHhc-CCCEEEeecCCCCCCCCCHHHHHHH
Confidence            9999999 999998777665444333222111 366678888999999999997 9999999954334456899999999


Q ss_pred             hccccccccccCceEEecccc
Q 018446          334 LEGERGEIIRQKNIIVSGPFT  354 (355)
Q Consensus       334 ~~~~~~~~l~~~~i~~V~~~~  354 (355)
                      ...        ..+..||-|.
T Consensus       300 ~~~--------~~v~~VgVFv  312 (452)
T 1pii_A          300 MAA--------APLQYVGVFR  312 (452)
T ss_dssp             HHH--------CCCEEEEEES
T ss_pred             Hhc--------CCCCEEEEEe
Confidence            765        1467888774

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=91.77  E-value=0.14  Score=48.26  Aligned_cols=125  Identities=20%  Similarity=0.263  Sum_probs=81.0

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe---ccC----CCCC---------C-----CHHHHHHH
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL---TDE----KYFK---------G-----SFENLEAV  233 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL---TD~----~fF~---------G-----S~edL~~V  233 (355)
                      ++.++|.=+=-.=|+..      .-.++++.++++||+.|-+=   +||    .+.+         |     -++.++.+
T Consensus        16 ~~~ali~yi~aGdP~~~------~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~i   89 (267)
T 3vnd_A           16 DKGAFVPFVTIGDPSPE------LSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKV   89 (267)
T ss_dssp             TCCEEEEEEETTSSCHH------HHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHH------HHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            45578876622222210      23578899999999999985   232    2222         2     16778888


Q ss_pred             HhcCCCCCeecc---ccc-cC--HHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHH
Q 018446          234 RSAGVKCPLLCK---EFI-VD--AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRV  304 (355)
Q Consensus       234 R~a~v~lPVLrK---DFI-Id--pyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerA  304 (355)
                      |+..+++||+-.   +-| ..  +--+..++.+|+|+|++.  =|+.++..++.+.|++.|++.+.=+.   +.+.++.+
T Consensus        90 r~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~--Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i  167 (267)
T 3vnd_A           90 RAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIA--DVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMV  167 (267)
T ss_dssp             HHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEET--TSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHH
T ss_pred             HhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeC--CCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH
Confidence            874378997542   111 11  112778899999997663  56667899999999999999764442   35777777


Q ss_pred             hcc
Q 018446          305 LGI  307 (355)
Q Consensus       305 l~l  307 (355)
                      .+.
T Consensus       168 ~~~  170 (267)
T 3vnd_A          168 SEQ  170 (267)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            665

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=91.74  E-value=0.26  Score=48.98  Aligned_cols=138  Identities=13%  Similarity=0.053  Sum_probs=76.0

Q ss_pred             CccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccC-----CCC--CCCHHHHHH
Q 018446          160 ARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDE-----KYF--KGSFENLEA  232 (355)
Q Consensus       160 ~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~-----~fF--~GS~edL~~  232 (355)
                      ...+..|+.+.    |.+++|.             .+.+|.++++...+....---+.++|     +.|  +-+++..+.
T Consensus        55 ~~~lA~Ava~a----GGlGvi~-------------~~~~~e~~~~~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~~~  117 (400)
T 3ffs_A           55 EHLMAVGMARL----GGIGIIH-------------KNMDMESQVNEVLKVKNWISNLEKNESTPDQNLDKESTDGKDTKS  117 (400)
T ss_dssp             SSHHHHHHHTT----TCEEEEC-------------SSSCHHHHHHHHHHHHCCC--------------------------
T ss_pred             cHHHHHHHHHC----CCEEEeC-------------CCCCHHHHHHHHHHHHhhccCcccCCCCccccccCCCCCHHHHHH
Confidence            44677777664    6788887             14567777766654322110011121     112  112222333


Q ss_pred             HHhcCCCCCeecccc-----------ccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHH-cCCcEEE-EeCCHH
Q 018446          233 VRSAGVKCPLLCKEF-----------IVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL-LGLTALV-EVHDER  299 (355)
Q Consensus       233 VR~a~v~lPVLrKDF-----------IIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~-LGLeaLV-EVH~~e  299 (355)
                      +.++ ...|--+||-           +-+.-++..+...|+|.|.+-.+.-.+..+.++++..++ +|+..++ .|++.+
T Consensus       118 ~~~~-~~~p~~~~d~~g~l~v~~~v~~~~~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e  196 (400)
T 3ffs_A          118 NNNI-DAYSNENLDNKGRLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEE  196 (400)
T ss_dssp             ------CCTTCCBCTTSSBCCEEEECCC-CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHH
T ss_pred             HHHh-hhCcchhhccccceeEEeecCCCHHHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHH
Confidence            3332 2345555551           012457777888999998774444333355555655544 5999997 999999


Q ss_pred             HHHHHhccCCCeEEEee
Q 018446          300 EMDRVLGIEGIELIGIN  316 (355)
Q Consensus       300 ELerAl~l~ga~iIGIN  316 (355)
                      +++.+.++ |++.|.+.
T Consensus       197 ~A~~a~~a-GAD~I~vG  212 (400)
T 3ffs_A          197 ATKELIEN-GADGIKVG  212 (400)
T ss_dssp             HHHHHHHT-TCSEEEEC
T ss_pred             HHHHHHHc-CCCEEEEe
Confidence            99999997 99999884

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=91.44  E-value=1.3  Score=39.14  Aligned_cols=59  Identities=12%  Similarity=0.134  Sum_probs=45.0

Q ss_pred             HHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCC-------HHHHHHHhccCCCeEEEe
Q 018446          253 QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHD-------EREMDRVLGIEGIELIGI  315 (355)
Q Consensus       253 QI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~-------~eELerAl~l~ga~iIGI  315 (355)
                      .|..|..+||+.|.+..   +.+.++.+.++|.+.|+...+|-|.       .+++.+.++. +.+-+|+
T Consensus        96 ~i~~A~~lGa~~v~~~~---~~~~~~~l~~~a~~~gv~l~~En~~~~~~~~~~~~~~~ll~~-~~~~~g~  161 (262)
T 3p6l_A           96 MFKFAKAMDLEFITCEP---ALSDWDLVEKLSKQYNIKISVHNHPQPSDYWKPENLLKAISG-RSQSLGS  161 (262)
T ss_dssp             HHHHHHHTTCSEEEECC---CGGGHHHHHHHHHHHTCEEEEECCSSSSSSSSHHHHHHHHTT-SCTTEEE
T ss_pred             HHHHHHHcCCCEEEecC---CHHHHHHHHHHHHHhCCEEEEEeCCCccccCCHHHHHHHHHh-CCCceEE
Confidence            57778899999887753   4578899999999999999999885       3677777653 3344454

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=91.37  E-value=0.28  Score=47.85  Aligned_cols=70  Identities=26%  Similarity=0.233  Sum_probs=56.6

Q ss_pred             HHHHHHHHHcCceEEEEec----cCCCCCCCHHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446          200 VEIARSYEKGGAACLSILT----DEKYFKGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLT----D~~fF~GS~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa  270 (355)
                      .+.|+..+++||++|.|--    ...+..+.++.|..++++ +  ++||+.-==|-++-++.+|.++|||+|.+=-.
T Consensus       240 ~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~-v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~  315 (368)
T 2nli_A          240 PEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAER-VNKRVPIVFDSGVRRGEHVAKALASGADVVALGRP  315 (368)
T ss_dssp             HHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHH-HTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHH-hCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence            3678888999999999932    223445678888899875 5  69999999999999999999999999986433

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=91.27  E-value=0.8  Score=43.79  Aligned_cols=101  Identities=8%  Similarity=0.002  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+=..-+ +-.+
T Consensus       207 a~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~  281 (371)
T 2ovl_A          207 AIRAARALAPFDLHWI----EEPTIPDDLVGNARIVRE-SGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTT  281 (371)
T ss_dssp             HHHHHHHHGGGCCSEE----ECCSCTTCHHHHHHHHHH-HCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHH
T ss_pred             HHHHHHHHHhcCCCEE----ECCCCcccHHHHHHHHhh-CCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHHH
Confidence            4467788888887765    455666789999999986 799999999999999999987776 78887744444 5667


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCHHHHHHHhc
Q 018446          277 IRYMTKICKLLGLTALVEVHDEREMDRVLG  306 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~eELerAl~  306 (355)
                      ...+.++|+..|+.+.+  |+.-|....+.
T Consensus       282 ~~~i~~~A~~~gi~~~~--h~~~~a~~hla  309 (371)
T 2ovl_A          282 FRKVAALAEANNMLLTS--HGVHDLTVHAL  309 (371)
T ss_dssp             HHHHHHHHHHTTCCEEE--CSCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEcc--ccHHHHHHHHH
Confidence            78899999999999776  77666554443

>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}

Probab=91.24  E-value=1.7  Score=39.32  Aligned_cols=126  Identities=17%  Similarity=0.086  Sum_probs=82.6

Q ss_pred             CceEEeEeeecCCCCCCCCCCCC-HHHHHHHHHHcCceEEEEeccCCCCCC-CHHHHHHHHhcCCCCC--eec-cccccC
Q 018446          176 LPALIAEVKKASPSRGILREDFD-PVEIARSYEKGGAACLSILTDEKYFKG-SFENLEAVRSAGVKCP--LLC-KEFIVD  250 (355)
Q Consensus       176 ~~aVIAEvKRaSPSkG~I~~~~D-p~~iA~~Ye~~GAaaISVLTD~~fF~G-S~edL~~VR~a~v~lP--VLr-KDFIId  250 (355)
                      +..+..|+|......    ...+ ...+++...+.|..      +.-.|+. +.+.|..+|+....+|  .|. ..+..+
T Consensus       108 ~~~l~iEiK~~~~~~----~~~~~~~~v~~~l~~~~~~------~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~  177 (258)
T 2o55_A          108 NLKLNLELKGEEWKR----KESGDHQRLLLLVEKYHMQ------ERVDYCSFHHEALAHLKALCPDVKITYLFNYMGQPT  177 (258)
T ss_dssp             CCEEEEEECCSSSSS----TTSSHHHHHHHHHHTTTCG------GGEEEEESSHHHHHHHHHHCTTCEEEEECCTTSCCC
T ss_pred             ceEEEEEEccCCccc----cchHHHHHHHHHHHHcCCC------CCEEEEeCCHHHHHHHHHHCCCCcEEEEEeCCCCCC
Confidence            467999999644210    1112 23566666666643      2222322 5788888887545565  344 444445


Q ss_pred             HHHH-HHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe-----CCHHHHHHHhccCCCeEEEee
Q 018446          251 AWQI-YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV-----HDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       251 pyQI-~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV-----H~~eELerAl~l~ga~iIGIN  316 (355)
                      +++. ..++..|+++|-.-...+++    .+++.+++.|+.+.+=.     .+.+++++.+++ |++.|--|
T Consensus       178 ~~~~~~~~~~~~~~~v~~~~~~~~~----~~v~~~~~~G~~v~~wTv~~~~n~~~~~~~l~~~-GvdgI~TD  244 (258)
T 2o55_A          178 PLDFVEQACYGDANGVSMLFHYLTK----EQVCTAHEKGLSVTVWMPWIFDDSEEDWKKCLEL-QVDLICSN  244 (258)
T ss_dssp             CTTHHHHHHHTTCSEEEEEGGGCCH----HHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHH-TCSEEEES
T ss_pred             HHHHHHHHHhcCCeEEecChhhcCH----HHHHHHHHCCCEEEEeeCCCCCCCHHHHHHHHHc-CCCEEEeC
Confidence            5543 23778999998776667764    67899999999998765     589999999987 88877654

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=91.19  E-value=0.22  Score=47.88  Aligned_cols=90  Identities=24%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHcCceEEEEec---cCC----CCC-CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHH
Q 018446          198 DPVEIARSYEKGGAACLSILT---DEK----YFK-GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLI  268 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT---D~~----fF~-GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLI  268 (355)
                      |..++|+.+++.|++.|.|-.   ++.    ... -.++.+..+|++ +++||+.---|-++.+..++...| ||+|-+-
T Consensus       240 ~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iG  318 (349)
T 3hgj_A          240 DTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKR-VGLRTGAVGLITTPEQAETLLQAGSADLVLLG  318 (349)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHH-HCCEEEECSSCCCHHHHHHHHHTTSCSEEEES
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHH-cCceEEEECCCCCHHHHHHHHHCCCceEEEec
Confidence            466889999999999999873   211    112 257788899986 899999999889999999999999 9999887


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCc
Q 018446          269 AAVLPDLDIRYMTKICKLLGLT  290 (355)
Q Consensus       269 aaiL~~~~L~~L~~~A~~LGLe  290 (355)
                      -++|.+-++  ..+.++.||.+
T Consensus       319 R~~lanPdl--~~k~~~~l~~~  338 (349)
T 3hgj_A          319 RVLLRDPYF--PLRAAKALGVA  338 (349)
T ss_dssp             THHHHCTTH--HHHHHHHTTCC
T ss_pred             HHHHhCchH--HHHHHHHCCCC
Confidence            777765554  34777788854

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=91.16  E-value=0.3  Score=44.41  Aligned_cols=71  Identities=13%  Similarity=0.164  Sum_probs=49.0

Q ss_pred             HHHHHHHHHcCceEEEEeccC-------CCCCCCHHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhc
Q 018446          200 VEIARSYEKGGAACLSILTDE-------KYFKGSFENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~-------~fF~GS~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaai  271 (355)
                      .+..+.+.+.+...+-+.|=.       .+-...++.+..+|+. +++||+. +|.|. +-++.+...+|||+|..--++
T Consensus       156 ~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~-~~~pI~v-gGGI~~~e~~~~~~~~GAdgvvVGSai  233 (262)
T 1rd5_A          156 EDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKV-TNKPVAV-GFGISKPEHVKQIAQWGADGVIIGSAM  233 (262)
T ss_dssp             HHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHH-CSSCEEE-ESCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred             HHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhh-cCCeEEE-ECCcCCHHHHHHHHHcCCCEEEEChHH
Confidence            344455555555455554421       1111234577888886 7899887 99999 999999999999999887665


Q ss_pred             C
Q 018446          272 L  272 (355)
Q Consensus       272 L  272 (355)
                      .
T Consensus       234 ~  234 (262)
T 1rd5_A          234 V  234 (262)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=91.13  E-value=0.22  Score=48.62  Aligned_cols=90  Identities=20%  Similarity=0.265  Sum_probs=67.8

Q ss_pred             CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH--h-cC--CHHHHHHHHHHHHHcCCcEEE--EeCCH
Q 018446          226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA--A-VL--PDLDIRYMTKICKLLGLTALV--EVHDE  298 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa--a-iL--~~~~L~~L~~~A~~LGLeaLV--EVH~~  298 (355)
                      +++.++.+|+. +++||+.|. +..+-.+..+..+|||+|.+.-  . .+  ....+..+.++...++...+.  -|++.
T Consensus       213 ~~~~i~~i~~~-~~~Pv~vkg-v~t~e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia~GGI~~~  290 (380)
T 1p4c_A          213 NWEALRWLRDL-WPHKLLVKG-LLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRRG  290 (380)
T ss_dssp             CHHHHHHHHHH-CCSEEEEEE-ECCHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCSH
T ss_pred             cHHHHHHHHHh-cCCCEEEEe-cCcHHHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEEECCCCCH
Confidence            47999999986 899999996 6789999999999999998821  1 11  011344555666667774443  28999


Q ss_pred             HHHHHHhccCCCeEEEeeCC
Q 018446          299 REMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       299 eELerAl~l~ga~iIGINNR  318 (355)
                      +++.+++.+ ||+.++|-.-
T Consensus       291 ~dv~kal~~-GAdaV~iGr~  309 (380)
T 1p4c_A          291 SDIVKALAL-GAEAVLLGRA  309 (380)
T ss_dssp             HHHHHHHHT-TCSCEEESHH
T ss_pred             HHHHHHHHh-CCcHhhehHH
Confidence            999999997 9999998654

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=91.05  E-value=1.6  Score=41.89  Aligned_cols=65  Identities=12%  Similarity=0.016  Sum_probs=52.9

Q ss_pred             HHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446          251 AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNL  320 (355)
Q Consensus       251 pyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL  320 (355)
                      ..++..+...|+|.|.+.....+.    ++++..++.|+.+++.|+|.+++.++.+. |++.|.+.++..
T Consensus       112 ~~~~~~~~~~g~~~V~~~~g~~~~----~~i~~~~~~g~~v~~~v~t~~~a~~a~~~-GaD~i~v~g~~~  176 (369)
T 3bw2_A          112 DAKLAVLLDDPVPVVSFHFGVPDR----EVIARLRRAGTLTLVTATTPEEARAVEAA-GADAVIAQGVEA  176 (369)
T ss_dssp             HHHHHHHHHSCCSEEEEESSCCCH----HHHHHHHHTTCEEEEEESSHHHHHHHHHT-TCSEEEEECTTC
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCcH----HHHHHHHHCCCeEEEECCCHHHHHHHHHc-CCCEEEEeCCCc
Confidence            457888889999999887665443    34555667899999999999999999986 999999988754

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=90.97  E-value=0.7  Score=42.13  Aligned_cols=74  Identities=15%  Similarity=0.069  Sum_probs=58.0

Q ss_pred             HHHHHHHHcCceEEEE----eccC-CCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446          201 EIARSYEKGGAACLSI----LTDE-KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL  275 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISV----LTD~-~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~  275 (355)
                      +.|+..++.||+.|.+    +|+. +-+.-+++.+..+++.  ++||+.-==|-++-++.++..+|||+|++--++..+.
T Consensus       140 eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~p~  217 (229)
T 3q58_A          140 NEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA--GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRIE  217 (229)
T ss_dssp             HHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT--TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHCHH
T ss_pred             HHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcChH
Confidence            5667778899999975    2322 2356688999999874  8999976555589999999999999999988877664


Q ss_pred             H
Q 018446          276 D  276 (355)
Q Consensus       276 ~  276 (355)
                      +
T Consensus       218 ~  218 (229)
T 3q58_A          218 H  218 (229)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=90.54  E-value=0.77  Score=39.03  Aligned_cols=94  Identities=20%  Similarity=0.186  Sum_probs=69.4

Q ss_pred             CCHHHHHHHHHHcCceEEEEec--cCCCCCCC-HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC-
Q 018446          197 FDPVEIARSYEKGGAACLSILT--DEKYFKGS-FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL-  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLT--D~~fF~GS-~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL-  272 (355)
                      .++.++.+.+...|+..+-+..  ......|- .+.+..+++. +++|++.-.=+-++-++.++...|||+++..-++. 
T Consensus       130 ~~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~i~~~~~~-~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~  208 (237)
T 3cwo_X          130 ILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF  208 (237)
T ss_dssp             EEHHHHHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHGGG-CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred             cCHHHHHHHHhhcCCCeEEEEecCCCCccccccHHHHHHHHHh-cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHc
Confidence            4678888999888888665543  33333332 6778888775 79999988777789999999999999998777663 


Q ss_pred             CHHHHHHHHHHHHHcCCcE
Q 018446          273 PDLDIRYMTKICKLLGLTA  291 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLea  291 (355)
                      .+-.++++.++..+.|...
T Consensus       209 ~~~~~~~~~~~l~~~~~~~  227 (237)
T 3cwo_X          209 REIDVRELKEYLKKHGVNV  227 (237)
T ss_dssp             TSSCHHHHHHHHHTTTCCC
T ss_pred             CCCCHHHHHHHHHHCCCce
Confidence            3446777777777777643

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A

Probab=90.41  E-value=0.53  Score=44.70  Aligned_cols=95  Identities=13%  Similarity=0.206  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCC-HHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLP-DLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~-~~~  276 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+=..-++ -.+
T Consensus       205 a~~~~~~l~~~~i~~i----E~P~~~~~~~~~~~l~~~-~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~  279 (359)
T 1mdl_A          205 AIKRSQALQQEGVTWI----EEPTLQHDYEGHQRIQSK-LNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTG  279 (359)
T ss_dssp             HHHHHHHHHHHTCSCE----ECCSCTTCHHHHHHHHHT-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHH
T ss_pred             HHHHHHHHHHhCCCeE----ECCCChhhHHHHHHHHHh-CCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCCHHH
Confidence            4467788888887765    455666789999999985 899999999999999999988776 788877555553 456


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCHHH
Q 018446          277 IRYMTKICKLLGLTALVEVHDERE  300 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~eE  300 (355)
                      ...+.++|+..|+.+.+  |+..+
T Consensus       280 ~~~i~~~A~~~g~~~~~--~~~~~  301 (359)
T 1mdl_A          280 WIRASALAQQFGIPMSS--HLFQE  301 (359)
T ss_dssp             HHHHHHHHHHTTCCBCC--BSCHH
T ss_pred             HHHHHHHHHHcCCeEee--ccHHH
Confidence            77889999999999665  45444

>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}

Probab=90.40  E-value=0.51  Score=42.04  Aligned_cols=63  Identities=16%  Similarity=0.089  Sum_probs=46.2

Q ss_pred             HHHHHHHcCCcchHHHHhcCCH------------HHHHHHHHHHHHcCCcEEEEeC------CHHHHHHHhccCCCeEEE
Q 018446          253 QIYYARTKGADAVLLIAAVLPD------------LDIRYMTKICKLLGLTALVEVH------DEREMDRVLGIEGIELIG  314 (355)
Q Consensus       253 QI~eAr~~GADAVLLIaaiL~~------------~~L~~L~~~A~~LGLeaLVEVH------~~eELerAl~l~ga~iIG  314 (355)
                      .|..|..+||..|.+.....+.            +.|.++.++|.+.|+...+|-|      +.+++.+.++.-+.+-+|
T Consensus        89 ~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~~~~vg  168 (286)
T 3dx5_A           89 LAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMYVLLETHPNTLTDTLPSTLELLGEVDHPNLK  168 (286)
T ss_dssp             HHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSTTSSHHHHHHHHHHHCCTTEE
T ss_pred             HHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCCcCcCCHHHHHHHHHhcCCCCeE
Confidence            5777889999998765544321            4577888999999999999999      678888777542333445


Q ss_pred             e
Q 018446          315 I  315 (355)
Q Consensus       315 I  315 (355)
                      +
T Consensus       169 ~  169 (286)
T 3dx5_A          169 I  169 (286)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=90.40  E-value=1.3  Score=42.40  Aligned_cols=91  Identities=15%  Similarity=0.183  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcC-CcchHH-HHhcCCHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKG-ADAVLL-IAAVLPDL  275 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~G-ADAVLL-IaaiL~~~  275 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.+ +.++.+....| +|.|.+ +..+=+-.
T Consensus       216 a~~~~~~l~~~~i~~i----E~P~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit  290 (382)
T 1rvk_A          216 ALALGRGLEKLGFDWI----EEPMDEQSLSSYKWLSDN-LDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGIT  290 (382)
T ss_dssp             HHHHHHHHHTTTCSEE----ECCSCTTCHHHHHHHHHH-CSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTSHH
T ss_pred             HHHHHHHHHhcCCCEE----eCCCChhhHHHHHHHHhh-CCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCCHH
Confidence            3467788888887754    455666789999999986 8999999999999 99999998877 688887 44443556


Q ss_pred             HHHHHHHHHHHcCCcEEEE
Q 018446          276 DIRYMTKICKLLGLTALVE  294 (355)
Q Consensus       276 ~L~~L~~~A~~LGLeaLVE  294 (355)
                      +...+.++|+..|+.+.+-
T Consensus       291 ~~~~i~~~A~~~g~~~~~~  309 (382)
T 1rvk_A          291 PALKTMHLAEAFGMECEVH  309 (382)
T ss_dssp             HHHHHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHHHHcCCeEeec
Confidence            7788999999999997766

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*

Probab=90.29  E-value=0.92  Score=43.87  Aligned_cols=97  Identities=15%  Similarity=0.087  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~~  276 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.++...| +|.|.+ +..+=+-.+
T Consensus       223 a~~~~~~l~~~~i~~i----E~P~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~  297 (393)
T 2og9_A          223 AQRMCRIFEPFNLVWI----EEPLDAYDHEGHAALALQ-FDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGITP  297 (393)
T ss_dssp             HHHHHHHHGGGCCSCE----ECCSCTTCHHHHHHHHHH-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHH
T ss_pred             HHHHHHHHHhhCCCEE----ECCCCcccHHHHHHHHHh-CCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeCccccCCHHH
Confidence            3467777788787654    455666789999999986 899999999999999999998887 788877 444435567


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCHHHHH
Q 018446          277 IRYMTKICKLLGLTALVEVHDEREMD  302 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~eELe  302 (355)
                      ...+.++|+..|+.+.  +|..-+.-
T Consensus       298 ~~~i~~~A~~~gi~~~--~h~~~~~~  321 (393)
T 2og9_A          298 FLKIASLAEHAGLMLA--PHFAMELH  321 (393)
T ss_dssp             HHHHHHHHHHTTCEEC--CCSCHHHH
T ss_pred             HHHHHHHHHHcCCEEe--ccCccHHH
Confidence            7889999999999876  67655543

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=90.29  E-value=0.24  Score=49.79  Aligned_cols=74  Identities=15%  Similarity=0.118  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC----------CCCCC---------CHHHHHHHHhcCC--CCCeeccccccCHHHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDE----------KYFKG---------SFENLEAVRSAGV--KCPLLCKEFIVDAWQIYY  256 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~----------~fF~G---------S~edL~~VR~a~v--~lPVLrKDFIIdpyQI~e  256 (355)
                      |..++|+..+++||++|.|-.--          ..++|         +++.+..++++ +  ++||+.-==|-++-++++
T Consensus       312 d~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~-v~~~iPVIg~GGI~s~~DA~e  390 (443)
T 1tv5_A          312 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNY-TNKQIPIIASGGIFSGLDALE  390 (443)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHH-TTTCSCEEEESSCCSHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHH-cCCCCcEEEECCCCCHHHHHH
Confidence            46778999999999999875421          11223         36788899886 6  899999999999999999


Q ss_pred             HHHcCCcchHHHHhcC
Q 018446          257 ARTKGADAVLLIAAVL  272 (355)
Q Consensus       257 Ar~~GADAVLLIaaiL  272 (355)
                      +..+|||+|.+--+++
T Consensus       391 ~l~aGAd~Vqigrall  406 (443)
T 1tv5_A          391 KIEAGASVCQLYSCLV  406 (443)
T ss_dssp             HHHTTEEEEEESHHHH
T ss_pred             HHHcCCCEEEEcHHHH
Confidence            9999999997755544

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=90.22  E-value=0.34  Score=44.97  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=83.8

Q ss_pred             CCCCHHHHHHHHHHcCceEEEEe-ccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          195 EDFDPVEIARSYEKGGAACLSIL-TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISVL-TD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      ..-||.++|+.|.+.||..|=++ -|.    .+.+.++.+++. +.+||-- +-.|...++.+.. +|||-|.+=.+++.
T Consensus        36 ~~~dp~~~A~~~~~~Ga~~l~vvDL~~----~n~~~i~~i~~~-~~~pv~v-gGGir~~~~~~~l-~Ga~~Viigs~a~~  108 (260)
T 2agk_A           36 SQHPSSYYAKLYKDRDVQGCHVIKLGP----NNDDAAREALQE-SPQFLQV-GGGINDTNCLEWL-KWASKVIVTSWLFT  108 (260)
T ss_dssp             -CCCHHHHHHHHHHTTCTTCEEEEESS----SCHHHHHHHHHH-STTTSEE-ESSCCTTTHHHHT-TTCSCEEECGGGBC
T ss_pred             cCCCHHHHHHHHHHcCCCEEEEEeCCC----CCHHHHHHHHhc-CCceEEE-eCCCCHHHHHHHh-cCCCEEEECcHHHh
Confidence            34589999999999999987663 122    678999999886 8899875 4444444777777 99999999888776


Q ss_pred             H------HHHHHHHHHHHHcC-------CcEE--------EEeC--------CHH-HHHHHhccCCCeEEEeeCCCCCcc
Q 018446          274 D------LDIRYMTKICKLLG-------LTAL--------VEVH--------DER-EMDRVLGIEGIELIGINNRNLETF  323 (355)
Q Consensus       274 ~------~~L~~L~~~A~~LG-------LeaL--------VEVH--------~~e-ELerAl~l~ga~iIGINNRdL~Tf  323 (355)
                      +      +.++++   ++.+|       +++=        |=++        +.. |+-+.+... +.-|-++.++-...
T Consensus       109 ~~g~~~p~~~~~~---~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~t~i~~dG~  184 (260)
T 2agk_A          109 KEGHFQLKRLERL---TELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKY-TNEFLIHAADVEGL  184 (260)
T ss_dssp             TTCCBCHHHHHHH---HHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEEEC------
T ss_pred             hcCCCCHHHHHHH---HHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHh-cCEEEEEeeccccC
Confidence            4      344444   44444       3321        1111        122 555555444 77777888877333


Q ss_pred             --ccChhhHHhhhccc
Q 018446          324 --EVDNSNTKKLLEGE  337 (355)
Q Consensus       324 --evDl~~t~~L~~~~  337 (355)
                        ..|++...+|.+..
T Consensus       185 ~~G~d~eli~~l~~~~  200 (260)
T 2agk_A          185 CGGIDELLVSKLFEWT  200 (260)
T ss_dssp             -CCCCHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhh
Confidence              25888888887653

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=90.18  E-value=0.52  Score=45.24  Aligned_cols=126  Identities=23%  Similarity=0.325  Sum_probs=85.9

Q ss_pred             HHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCee------ccccccCHH-------HHHHHHHcCCcch
Q 018446          202 IARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLL------CKEFIVDAW-------QIYYARTKGADAV  265 (355)
Q Consensus       202 iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVL------rKDFIIdpy-------QI~eAr~~GADAV  265 (355)
                      =|..-+++||+-|=.+ +.-+.+|   |+..++.+|+. +++||-      --||+.+++       .|..++.+|||+|
T Consensus        51 ~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~-~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGv  128 (287)
T 3iwp_A           51 SAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQS-VQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGL  128 (287)
T ss_dssp             HHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTT-CCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHh-cCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Confidence            3444567899999988 4455555   68999999985 789975      359999954       5778999999999


Q ss_pred             HHHH----hcCCHHHHHHHHHHHHHcCCcEEEEeCCH--------HHHHHHhccCCCeEEEeeCCCCCccccChhhHHhh
Q 018446          266 LLIA----AVLPDLDIRYMTKICKLLGLTALVEVHDE--------REMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL  333 (355)
Q Consensus       266 LLIa----aiL~~~~L~~L~~~A~~LGLeaLVEVH~~--------eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L  333 (355)
                      .+=+    .-++.+.++.|++.|..++++    .|-.        +-++..+++ |++-|--.+-- .+-.-.++.-.+|
T Consensus       129 VfG~L~~dg~iD~~~~~~Li~~a~~l~vT----FHRAFD~~~d~~~Ale~Li~l-GvdrILTSG~~-~~a~~Gl~~Lk~L  202 (287)
T 3iwp_A          129 VFGALTEDGHIDKELCMSLMAICRPLPVT----FHRAFDMVHDPMAALETLLTL-GFERVLTSGCD-SSALEGLPLIKRL  202 (287)
T ss_dssp             EECCBCTTSCBCHHHHHHHHHHHTTSCEE----ECGGGGGCSCHHHHHHHHHHH-TCSEEEECTTS-SSTTTTHHHHHHH
T ss_pred             EEeeeCCCCCcCHHHHHHHHHHcCCCcEE----EECchhccCCHHHHHHHHHHc-CCCEEECCCCC-CChHHhHHHHHHH
Confidence            8753    346667899999988866533    4433        345566665 77777666642 2223344555555


Q ss_pred             hc
Q 018446          334 LE  335 (355)
Q Consensus       334 ~~  335 (355)
                      ..
T Consensus       203 v~  204 (287)
T 3iwp_A          203 IE  204 (287)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=90.17  E-value=0.89  Score=43.63  Aligned_cols=88  Identities=16%  Similarity=0.128  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ..++++.+++.|. .|   -+| + . +++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+=..-+ +-.+
T Consensus       205 a~~~~~~l~~~~i-~i---E~P-~-~-~~~~~~~l~~~-~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~  276 (379)
T 2rdx_A          205 AIRLARATRDLDY-IL---EQP-C-R-SYEECQQVRRV-ADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSK  276 (379)
T ss_dssp             HHHHHHHTTTSCC-EE---ECC-S-S-SHHHHHHHHTT-CCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHH
T ss_pred             HHHHHHHHHhCCe-EE---eCC-c-C-CHHHHHHHHhh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHH
Confidence            3456777777775 43   344 3 3 99999999985 899999999999999999987776 78888744444 5567


Q ss_pred             HHHHHHHHHHcCCcEEEE
Q 018446          277 IRYMTKICKLLGLTALVE  294 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVE  294 (355)
                      ...+.++|+..|+.+.+-
T Consensus       277 ~~~i~~~A~~~g~~~~~~  294 (379)
T 2rdx_A          277 ARRTRDFLIDNRMPVVAE  294 (379)
T ss_dssp             HHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHcCCeEEEe
Confidence            788999999999997766

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=89.92  E-value=0.46  Score=42.93  Aligned_cols=64  Identities=16%  Similarity=0.145  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCC--CHHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcc
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADA  264 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G--S~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADA  264 (355)
                      +..++|+..+++||++|-+.|  .|+.|  +++++..+++. +  ++||..-==|-++-+..+...+|||.
T Consensus       133 ~~~~~a~~a~eaGad~I~tst--g~~~gga~~~~i~~v~~~-v~~~ipVia~GGI~t~~da~~~l~aGA~~  200 (225)
T 1mzh_A          133 EIKKAVEICIEAGADFIKTST--GFAPRGTTLEEVRLIKSS-AKGRIKVKASGGIRDLETAISMIEAGADR  200 (225)
T ss_dssp             HHHHHHHHHHHHTCSEEECCC--SCSSSCCCHHHHHHHHHH-HTTSSEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHhCCCEEEECC--CCCCCCCCHHHHHHHHHH-hCCCCcEEEECCCCCHHHHHHHHHhCchH
Confidence            356788999999999995455  45445  78999999875 4  79999888788899999999999993

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}

Probab=89.86  E-value=0.91  Score=43.89  Aligned_cols=93  Identities=10%  Similarity=-0.021  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ..++++.+++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+=..-. +-.+
T Consensus       210 a~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~  284 (391)
T 2qgy_A          210 TKSFLKEVSSFNPYWI----EEPVDGENISLLTEIKNT-FNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGLID  284 (391)
T ss_dssp             HHHHHHHHGGGCCSEE----ECSSCTTCHHHHHHHHHH-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCHHH
T ss_pred             HHHHHHHHHhcCCCeE----eCCCChhhHHHHHHHHhh-CCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCHHH
Confidence            4467788888887755    445566789999999986 899999999999999999988877 78877734443 5667


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCH
Q 018446          277 IRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ...+.++|+..|+.+.  +|+.
T Consensus       285 ~~~i~~~A~~~gi~~~--~~~~  304 (391)
T 2qgy_A          285 IIEISNEASNNGIFIS--PHCW  304 (391)
T ss_dssp             HHHHHHHHHHTTCEEC--CBCC
T ss_pred             HHHHHHHHHHCCCEEe--ccCC
Confidence            7889999999999855  5544

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1

Probab=89.82  E-value=1.3  Score=42.16  Aligned_cols=92  Identities=11%  Similarity=0.123  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~~  276 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+ ...+=+-.+
T Consensus       204 a~~~~~~l~~~~i~~i----EqP~~~~~~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~  278 (370)
T 1nu5_A          204 ASIWIPRLEEAGVELV----EQPVPRANFGALRRLTEQ-NGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIAN  278 (370)
T ss_dssp             HHHHHHHHHHHTCCEE----ECCSCTTCHHHHHHHHHH-CSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHH
T ss_pred             HHHHHHHHHhcCcceE----eCCCCcccHHHHHHHHHh-CCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEchhhcCCHHH
Confidence            3467778888886653    444566889999999986 899999999999999999998887 788877 444445667


Q ss_pred             HHHHHHHHHHcCCcEEEEeCC
Q 018446          277 IRYMTKICKLLGLTALVEVHD  297 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~  297 (355)
                      ...+.++|+..|+.+.  +|+
T Consensus       279 ~~~i~~~A~~~g~~~~--~~~  297 (370)
T 1nu5_A          279 TLKVAAVAEAAGISSY--GGT  297 (370)
T ss_dssp             HHHHHHHHHHHTCEEE--ECC
T ss_pred             HHHHHHHHHHcCCcEE--ecC
Confidence            7889999999999976  554

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=89.79  E-value=0.14  Score=52.07  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=50.6

Q ss_pred             HHHHHHHHHcCceEEEE-------eccC---CCCCCCHHHHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHH
Q 018446          200 VEIARSYEKGGAACLSI-------LTDE---KYFKGSFENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLL  267 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISV-------LTD~---~fF~GS~edL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL  267 (355)
                      .+.|+...++||++|.|       +|..   .+-...++.+..++++  ..++||+.-==|-++-+|..|.++|||+|.+
T Consensus       308 ~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v  387 (511)
T 3usb_A          308 AEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML  387 (511)
T ss_dssp             HHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence            46788999999999987       2211   0112225555554322  2579999877777999999999999999987


Q ss_pred             HHhcC
Q 018446          268 IAAVL  272 (355)
Q Consensus       268 IaaiL  272 (355)
                      =-+++
T Consensus       388 Gs~~~  392 (511)
T 3usb_A          388 GSMFA  392 (511)
T ss_dssp             STTTT
T ss_pred             cHHHh
Confidence            55543

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=89.71  E-value=1.2  Score=43.42  Aligned_cols=116  Identities=13%  Similarity=0.063  Sum_probs=73.7

Q ss_pred             HHHHHHHH---HcCceEEEEeccC------CCCCCCHH----HHHHHHhcCCCCCeecc---ccccCHHHHHHHH----H
Q 018446          200 VEIARSYE---KGGAACLSILTDE------KYFKGSFE----NLEAVRSAGVKCPLLCK---EFIVDAWQIYYAR----T  259 (355)
Q Consensus       200 ~~iA~~Ye---~~GAaaISVLTD~------~fF~GS~e----dL~~VR~a~v~lPVLrK---DFIIdpyQI~eAr----~  259 (355)
                      .+.|+..+   +.|+++|=++.--      ..|+.+.+    .++.||++ +++||+.|   |+  |.-++.++.    .
T Consensus       142 ~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~-~~~PV~vKi~p~~--d~~~~~~~a~~~~~  218 (354)
T 4ef8_A          142 VEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEV-YPHSFGVKMPPYF--DFAHFDAAAEILNE  218 (354)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHH-CCSCEEEEECCCC--SHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHh-hCCCeEEEecCCC--CHHHHHHHHHHHHh
Confidence            34444443   5688898887531      23444544    45566775 78999877   54  555555543    5


Q ss_pred             cC-CcchHHHHhc-----------------------CC-----HHHHHHHHHHHHHcC-CcEEE--EeCCHHHHHHHhcc
Q 018446          260 KG-ADAVLLIAAV-----------------------LP-----DLDIRYMTKICKLLG-LTALV--EVHDEREMDRVLGI  307 (355)
Q Consensus       260 ~G-ADAVLLIaai-----------------------L~-----~~~L~~L~~~A~~LG-LeaLV--EVH~~eELerAl~l  307 (355)
                      +| ||+|.++-.+                       |+     +..++.+.++.+..+ +..+.  -|+|.+++.+++.+
T Consensus       219 ~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~a  298 (354)
T 4ef8_A          219 FPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLA  298 (354)
T ss_dssp             CTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHH
T ss_pred             CCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHc
Confidence            66 9999764221                       11     235666666666653 44443  47999999999986


Q ss_pred             CCCeEEEeeCCC
Q 018446          308 EGIELIGINNRN  319 (355)
Q Consensus       308 ~ga~iIGINNRd  319 (355)
                       ||+.|+|-.-.
T Consensus       299 -GAd~V~vgra~  309 (354)
T 4ef8_A          299 -GASMVQVGTAL  309 (354)
T ss_dssp             -TEEEEEECHHH
T ss_pred             -CCCEEEEhHHH
Confidence             99999986543

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}

Probab=89.70  E-value=1.5  Score=39.12  Aligned_cols=117  Identities=17%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHh-cCCCCCeeccc---cc--cCH-----------HHHHHHHH
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS-AGVKCPLLCKE---FI--VDA-----------WQIYYART  259 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~-a~v~lPVLrKD---FI--Idp-----------yQI~eAr~  259 (355)
                      .++.+..+...+.|..+|-+....  +....+.+++..+ .+..++.++-.   ++  .|+           ..|..|..
T Consensus        38 ~~~~~~l~~~~~~G~~~vEl~~~~--~~~~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~  115 (287)
T 3kws_A           38 ESLNEKLDFMEKLGVVGFEPGGGG--LAGRVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAGE  115 (287)
T ss_dssp             SSHHHHHHHHHHTTCCEEECBSTT--CGGGHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCEEEecCCc--hHHHHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            577788888888888888877662  3444555544432 23333333332   11  133           35777899


Q ss_pred             cCCcchHHHHhc------CC---------HHHHHHHHHHHHHcCCcEEEEeCC---------HHHHHHHhccCCCeEEEe
Q 018446          260 KGADAVLLIAAV------LP---------DLDIRYMTKICKLLGLTALVEVHD---------EREMDRVLGIEGIELIGI  315 (355)
Q Consensus       260 ~GADAVLLIaai------L~---------~~~L~~L~~~A~~LGLeaLVEVH~---------~eELerAl~l~ga~iIGI  315 (355)
                      +||+.|.+....      ++         -+.|.++.++|.+.|+...+|-|+         .+++.+.++.-+.+-+|+
T Consensus       116 lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~~ll~~v~~~~vg~  195 (287)
T 3kws_A          116 LGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIFEPLNRKECFYLRQVADAASLCRDINNPGVRC  195 (287)
T ss_dssp             TTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSSCCCHHHHHHHHHHHCCTTEEE
T ss_pred             cCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHHHHcCCCCeeE
Confidence            999988765431      11         246788889999999999999774         667766665323333554

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=89.60  E-value=0.91  Score=44.46  Aligned_cols=71  Identities=20%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             HHHHHHHHcCceEEEEecc--CCCC--CCCHHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          201 EIARSYEKGGAACLSILTD--EKYF--KGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD--~~fF--~GS~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      +.|+..++.||++|.|---  ..+.  ..+++-|..++++ +  ++||+.-==|-++-++.+|.++|||+|.+=-.+|
T Consensus       229 e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~a-v~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l  305 (352)
T 3sgz_A          229 EDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAA-VKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPIL  305 (352)
T ss_dssp             HHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHH-HTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHH-hCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            5788888999999998321  1111  2346788888775 5  7999999999999999999999999998744443

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=89.53  E-value=0.91  Score=43.22  Aligned_cols=69  Identities=19%  Similarity=0.146  Sum_probs=44.7

Q ss_pred             cccc-ccCHHHHHHHHHcCCc--------chHHHHhcCCHHHH-------HHHHHHHHHcC--CcEEEEeCCHHHHHHHh
Q 018446          244 CKEF-IVDAWQIYYARTKGAD--------AVLLIAAVLPDLDI-------RYMTKICKLLG--LTALVEVHDEREMDRVL  305 (355)
Q Consensus       244 rKDF-IIdpyQI~eAr~~GAD--------AVLLIaaiL~~~~L-------~~L~~~A~~LG--LeaLVEVH~~eELerAl  305 (355)
                      ||.. .+-.++-|.++.-|++        +|++     .+..+       +.+-.+.+.++  ....|||+|.+|+..|+
T Consensus       140 Rkt~p~~r~~e~~A~~~GG~~~hr~~l~d~vli-----k~~Hi~~~g~~~~ai~~~r~~~~~~~~i~vev~tlee~~~A~  214 (299)
T 2jbm_A          140 RKTTPGFRLVEKYGLLVGGAASHRYDLGGLVMV-----KDNHVVAAGGVEKAVRAARQAADFALKVEVECSSLQEAVQAA  214 (299)
T ss_dssp             SCCCTTCHHHHHHHHHHTTCBCCCCSTTSSEEE-----CHHHHHHHTSHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHH
T ss_pred             CCCChhhHHHHHHHHHHCCCCceecCccceEEe-----cccHHHHcCCHHHHHHHHHHhCCcCCeEEEecCCHHHHHHHH
Confidence            4443 2334555667777887        6652     22222       12223333344  57899999999999999


Q ss_pred             ccCCCeEEEeeCC
Q 018446          306 GIEGIELIGINNR  318 (355)
Q Consensus       306 ~l~ga~iIGINNR  318 (355)
                      .. |+++|++.|-
T Consensus       215 ~a-GaD~I~ld~~  226 (299)
T 2jbm_A          215 EA-GADLVLLDNF  226 (299)
T ss_dssp             HT-TCSEEEEESC
T ss_pred             Hc-CCCEEEECCC
Confidence            96 9999999883

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=89.52  E-value=0.42  Score=46.24  Aligned_cols=90  Identities=23%  Similarity=0.159  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHcCceEEEEecc---CC----CCCC-CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTD---EK----YFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLI  268 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD---~~----fF~G-S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLI  268 (355)
                      |..++|+.+++.|++.|.|-.-   +.    +..| ..+.+..+|++ +++||+.---|-++.+..++...| ||.|-+-
T Consensus       247 ~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iG  325 (363)
T 3l5l_A          247 ESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRRE-AKLPVTSAWGFGTPQLAEAALQANQLDLVSVG  325 (363)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH-HTCCEEECSSTTSHHHHHHHHHTTSCSEEECC
T ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHHCCCccEEEec
Confidence            5678899999999999998641   11    1122 46778899986 899999998888999999999999 9999887


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCc
Q 018446          269 AAVLPDLDIRYMTKICKLLGLT  290 (355)
Q Consensus       269 aaiL~~~~L~~L~~~A~~LGLe  290 (355)
                      -++|.+-+|  ..++++.||.+
T Consensus       326 R~~lanPdl--~~k~~~~lg~~  345 (363)
T 3l5l_A          326 RAHLADPHW--AYFAAKELGVE  345 (363)
T ss_dssp             HHHHHCTTH--HHHHHHHTTCT
T ss_pred             HHHHhCchH--HHHHHHHcCCC
Confidence            777765454  34677788853

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=89.52  E-value=0.43  Score=47.00  Aligned_cols=72  Identities=18%  Similarity=0.154  Sum_probs=54.7

Q ss_pred             HHHHHHHHHcCceEEEEe--ccCCCC--CCCHHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          200 VEIARSYEKGGAACLSIL--TDEKYF--KGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVL--TD~~fF--~GS~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      .+.|+..+++||++|.|=  .-...+  ...++-|..++++ +  ++||+.-==|-++-++.+|.++|||+|.+=-.+|
T Consensus       263 ~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~a-v~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l  340 (392)
T 2nzl_A          263 GDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEA-VEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIV  340 (392)
T ss_dssp             HHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHH-HTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             HHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHH-cCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHH
Confidence            356889999999999992  111112  2346778888875 4  5999999999999999999999999997644333

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=89.49  E-value=0.43  Score=51.94  Aligned_cols=92  Identities=22%  Similarity=0.174  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHHcCceEEEEe------------------------ccCCCCCCC------HHHHHHHHhcCC-CCCeeccc
Q 018446          198 DPVEIARSYEKGGAACLSIL------------------------TDEKYFKGS------FENLEAVRSAGV-KCPLLCKE  246 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL------------------------TD~~fF~GS------~edL~~VR~a~v-~lPVLrKD  246 (355)
                      |..++|+..+++||++|+|-                        +....+.|.      ++.+..++++ + ++||+.-=
T Consensus       716 ~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~-~~~ipvi~~G  794 (1025)
T 1gte_A          716 DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARA-LPGFPILATG  794 (1025)
T ss_dssp             CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHH-STTCCEEEES
T ss_pred             HHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHH-cCCCCEEEec
Confidence            78999999999999999992                        111112232      4678888886 6 89999999


Q ss_pred             cccCHHHHHHHHHcCCcchHHHHhcCC--H----HHHHHHHHHHHHcCCc
Q 018446          247 FIVDAWQIYYARTKGADAVLLIAAVLP--D----LDIRYMTKICKLLGLT  290 (355)
Q Consensus       247 FIIdpyQI~eAr~~GADAVLLIaaiL~--~----~~L~~L~~~A~~LGLe  290 (355)
                      =|-++-++.++..+|||+|.+--++|.  .    +-+.+|-.+...+|..
T Consensus       795 GI~s~~da~~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~l~~~G~~  844 (1025)
T 1gte_A          795 GIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIE  844 (1025)
T ss_dssp             SCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHTTCG
T ss_pred             CcCCHHHHHHHHHcCCCEEEEeeccccCCccHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999998777763  2    2233445556666764

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=89.48  E-value=0.4  Score=43.92  Aligned_cols=137  Identities=20%  Similarity=0.190  Sum_probs=91.2

Q ss_pred             CCCHHHHHHHHHHcCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          196 DFDPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      .-||.++|+.|.+.||.-|-|+=-...+.|.   ++-++.+.+. +.+|+--===|-+.-++.....+|||-|.+-.+++
T Consensus        30 ~~dP~~~a~~~~~~gad~lhvvDld~a~~~~~~~~~~i~~i~~~-~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~  108 (243)
T 4gj1_A           30 KYNPLKKFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEKLAKE-VSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAI  108 (243)
T ss_dssp             CCCHHHHHHHHHHHTCCEEEEEEHHHHHCGGGCCHHHHHHHHHH-CCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTT
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEecCcccccchhHHHHHHHHHHh-cCCCeEeccccccHHHHHHHHHcCCCEEEEccccc
Confidence            3589999999999999998877433333343   4566677665 78898776667788899999999999999988777


Q ss_pred             CHHHHHHHHHHHHHcCCcEEE---E----------eCC---------HHHHHHHhccCCCeEEEeeCC--CCCccccChh
Q 018446          273 PDLDIRYMTKICKLLGLTALV---E----------VHD---------EREMDRVLGIEGIELIGINNR--NLETFEVDNS  328 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLV---E----------VH~---------~eELerAl~l~ga~iIGINNR--dL~TfevDl~  328 (355)
                      .+.++  +.+.+..+|=+.+|   .          +|.         .+-+++..+. |+.=|-+|+=  |=.---.|++
T Consensus       109 ~~p~l--i~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~-g~~eil~t~Id~DGt~~G~d~~  185 (243)
T 4gj1_A          109 KDATL--CLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNK-GLKHILCTDISKDGTMQGVNVR  185 (243)
T ss_dssp             TCHHH--HHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTT-TCCEEEEEETTC-----CCCHH
T ss_pred             cCCch--HHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhc-CCcEEEeeeecccccccCCCHH
Confidence            66443  34667777755433   1          121         2335555554 7777777744  4334446777


Q ss_pred             hHHhhhcc
Q 018446          329 NTKKLLEG  336 (355)
Q Consensus       329 ~t~~L~~~  336 (355)
                      ...+|.+.
T Consensus       186 l~~~l~~~  193 (243)
T 4gj1_A          186 LYKLIHEI  193 (243)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77777654

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=89.42  E-value=1  Score=41.47  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=37.3

Q ss_pred             HHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhc
Q 018446          227 FENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       227 ~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaai  271 (355)
                      .+.++.+|+. +++||.. ||.|+ +-|+.++...|||+|..=-++
T Consensus       194 ~~~i~~lr~~-~~~pi~v-ggGI~t~e~~~~~~~agAD~vVVGSai  237 (268)
T 1qop_A          194 HHLIEKLKEY-HAAPALQ-GFGISSPEQVSAAVRAGAAGAISGSAI  237 (268)
T ss_dssp             HHHHHHHHHT-TCCCEEE-ESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred             HHHHHHHHhc-cCCcEEE-ECCCCCHHHHHHHHHcCCCEEEEChHH
Confidence            7899999986 7899776 99998 999999999999999874444

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=89.26  E-value=0.63  Score=40.70  Aligned_cols=74  Identities=23%  Similarity=0.202  Sum_probs=54.7

Q ss_pred             CHHHHHHHHHHcCceEEEE---e-ccCC---CCCCCHHHHHHHHhcCCC-CCeeccccccCHHHHHHHHHcCCcchHHHH
Q 018446          198 DPVEIARSYEKGGAACLSI---L-TDEK---YFKGSFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIA  269 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISV---L-TD~~---fF~GS~edL~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~~GADAVLLIa  269 (355)
                      ++.++ ..+.+.||+.+-+   . |..+   +-..+++.+..+++. ++ +||+. ...|.+-.+.++..+|||+|.+.-
T Consensus       125 t~~e~-~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~-~~~~pvia-~GGI~~~nv~~~~~~Ga~gv~vgs  201 (227)
T 2tps_A          125 TMSEV-KQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ-GISIPIVG-IGGITIDNAAPVIQAGADGVSMIS  201 (227)
T ss_dssp             SHHHH-HHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT-TCCCCEEE-ESSCCTTTSHHHHHTTCSEEEESH
T ss_pred             CHHHH-HHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHh-CCCCCEEE-EcCCCHHHHHHHHHcCCCEEEEhH
Confidence            56664 4455679999886   2 2211   122368899999885 67 99766 788999999999999999999988


Q ss_pred             hcCCH
Q 018446          270 AVLPD  274 (355)
Q Consensus       270 aiL~~  274 (355)
                      ++...
T Consensus       202 ~i~~~  206 (227)
T 2tps_A          202 AISQA  206 (227)
T ss_dssp             HHHTS
T ss_pred             HhhcC
Confidence            88753

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}

Probab=89.26  E-value=1.1  Score=43.36  Aligned_cols=92  Identities=11%  Similarity=0.091  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHh-cCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS-AGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDL  275 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~-a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~  275 (355)
                      ..++++..++.|...|    |..+-..+++.+..+++ . +++||..-+-+.++.++.+....| +|+|.+ +..+=+-.
T Consensus       211 a~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit  285 (401)
T 2hzg_A          211 AAARLPTLDAAGVLWL----EEPFDAGALAAHAALAGRG-ARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLG  285 (401)
T ss_dssp             HHTTHHHHHHTTCSEE----ECCSCTTCHHHHHHHHTTC-CSSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHHHTSHH
T ss_pred             HHHHHHHHHhcCCCEE----ECCCCccCHHHHHHHHhhC-CCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcchhCCHH
Confidence            3457788888887765    45566678999999997 6 799999999999999999888776 788877 44443556


Q ss_pred             HHHHHHHHHHHcCCcEEEEeCC
Q 018446          276 DIRYMTKICKLLGLTALVEVHD  297 (355)
Q Consensus       276 ~L~~L~~~A~~LGLeaLVEVH~  297 (355)
                      +...+.++|+..|+.+.  +|+
T Consensus       286 ~~~~i~~~A~~~g~~~~--~h~  305 (401)
T 2hzg_A          286 PAKRVADAAQARGITYV--NHT  305 (401)
T ss_dssp             HHHHHHHHHHHHTCEEE--ECC
T ss_pred             HHHHHHHHHHHcCCEEe--cCC
Confidence            77789999999999966  663

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=89.23  E-value=0.76  Score=44.31  Aligned_cols=92  Identities=11%  Similarity=0.100  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCCHHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLPDLDI  277 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~~~~L  277 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.++...| +|+|.+=..-=+-.+.
T Consensus       224 a~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~GGit~~  298 (388)
T 2nql_A          224 ALELIAEMQPFDPWFA----EAPVWTEDIAGLEKVSKN-TDVPIAVGEEWRTHWDMRARIERCRIAIVQPEMGHKGITNF  298 (388)
T ss_dssp             HHHHHHHHGGGCCSCE----ECCSCTTCHHHHHHHHTS-CCSCEEECTTCCSHHHHHHHHTTSCCSEECCCHHHHCHHHH
T ss_pred             HHHHHHHHhhcCCCEE----ECCCChhhHHHHHHHHhh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecCCCCCHHHH
Confidence            4467788888887755    455656789999999985 899999999999999999998877 7888772332345567


Q ss_pred             HHHHHHHHHcCCcEEEEeCC
Q 018446          278 RYMTKICKLLGLTALVEVHD  297 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVEVH~  297 (355)
                      ..+.++|+..|+.+.+  |+
T Consensus       299 ~~i~~~A~~~g~~~~~--h~  316 (388)
T 2nql_A          299 IRIGALAAEHGIDVIP--HA  316 (388)
T ss_dssp             HHHHHHHHHHTCEECC--CC
T ss_pred             HHHHHHHHHcCCeEEe--ec
Confidence            7889999999998766  73

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=89.21  E-value=1.2  Score=43.15  Aligned_cols=116  Identities=14%  Similarity=0.083  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHcCce-EEEEeccC------CCCCCCHHHH----HHHHhcCCCCCeecc---ccccCHHHHHHH-HHcCCc
Q 018446          199 PVEIARSYEKGGAA-CLSILTDE------KYFKGSFENL----EAVRSAGVKCPLLCK---EFIVDAWQIYYA-RTKGAD  263 (355)
Q Consensus       199 p~~iA~~Ye~~GAa-aISVLTD~------~fF~GS~edL----~~VR~a~v~lPVLrK---DFIIdpyQI~eA-r~~GAD  263 (355)
                      ..+.|+..++.|++ +|=++.--      ..|+.+.+.+    +.||++ +++||+.|   |  .|.-++.++ ..+|||
T Consensus       143 ~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~-~~~PV~vKi~p~--~~~~~~a~~~~~aga~  219 (345)
T 3oix_A          143 THTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTY-FTKPLGIKLPPY--FDIVHFDQAAAIFNXY  219 (345)
T ss_dssp             HHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTT-CCSCEEEEECCC--CCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHH-hCCCeEEEECCC--CCHHHHHHHHHHhCCC
Confidence            33444555556766 77776431      2344455444    455664 78999877   6  366776554 567999


Q ss_pred             chHHHHhc------------------------CC-----HHHHHHHHHHHHHc--CCcEEE--EeCCHHHHHHHhccCCC
Q 018446          264 AVLLIAAV------------------------LP-----DLDIRYMTKICKLL--GLTALV--EVHDEREMDRVLGIEGI  310 (355)
Q Consensus       264 AVLLIaai------------------------L~-----~~~L~~L~~~A~~L--GLeaLV--EVH~~eELerAl~l~ga  310 (355)
                      +|-+|..+                        |+     +..+..+.++.+.+  .+..+.  -|+|.+++.+++.+ ||
T Consensus       220 ~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~a-GA  298 (345)
T 3oix_A          220 PLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILC-GA  298 (345)
T ss_dssp             CCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHH-TC
T ss_pred             ceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHh-CC
Confidence            98655322                        11     11245566677777  354444  47999999999986 99


Q ss_pred             eEEEeeCC
Q 018446          311 ELIGINNR  318 (355)
Q Consensus       311 ~iIGINNR  318 (355)
                      +.|+|---
T Consensus       299 d~V~igra  306 (345)
T 3oix_A          299 SMVQIGTA  306 (345)
T ss_dssp             SEEEESHH
T ss_pred             CEEEEChH
Confidence            99998543

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=89.08  E-value=0.47  Score=45.48  Aligned_cols=67  Identities=24%  Similarity=0.272  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHcCC--------cchHH----HHhcCCHHHHHHHHHHHHHc--CCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          250 DAWQIYYARTKGA--------DAVLL----IAAVLPDLDIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       250 dpyQI~eAr~~GA--------DAVLL----IaaiL~~~~L~~L~~~A~~L--GLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      -..|-|-.+.-|+        |+||+    |+.. +  .+..-++.+++.  +....|||+|.+|++.|+.+ |+++|..
T Consensus       149 R~l~kyAV~~GGg~nHR~gL~d~vlikdNHi~~~-G--~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~a-GaD~I~L  224 (287)
T 3tqv_A          149 RLAQKYAVRCGGGFNHRIGLFDAYLIKENHIRSA-G--GIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAA-KADIVML  224 (287)
T ss_dssp             HHHHHHHHHHTTCBCCCSSSSSSEEECTTTC-------CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHT-TCSEEEE
T ss_pred             HHHHHHHHHhcCchheeccCccEEEEeHHHHHHh-C--CHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHc-CCCEEEE
Confidence            3466777777776        67666    3332 2  133444555554  47789999999999999997 9999999


Q ss_pred             eCCCC
Q 018446          316 NNRNL  320 (355)
Q Consensus       316 NNRdL  320 (355)
                      .|-++
T Consensus       225 Dn~~~  229 (287)
T 3tqv_A          225 DNFSG  229 (287)
T ss_dssp             ESCCH
T ss_pred             cCCCH
Confidence            99544

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=89.07  E-value=0.4  Score=48.87  Aligned_cols=69  Identities=14%  Similarity=0.072  Sum_probs=53.6

Q ss_pred             HHHHHHHHHcCceEEEEec--c--CCCCCCCHHHHHHHHhcCC-------CCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446          200 VEIARSYEKGGAACLSILT--D--EKYFKGSFENLEAVRSAGV-------KCPLLCKEFIVDAWQIYYARTKGADAVLLI  268 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLT--D--~~fF~GS~edL~~VR~a~v-------~lPVLrKDFIIdpyQI~eAr~~GADAVLLI  268 (355)
                      .+.|+..+++||++|.|=.  -  -......++.|..++++ +       ++||+.-==|-++-++.+|.++|||+|.+=
T Consensus       354 ~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~-v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iG  432 (511)
T 1kbi_A          354 TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPI-LEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG  432 (511)
T ss_dssp             HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHH-HHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHH-HHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            4678888999999999921  1  11122346788888775 4       799999999999999999999999999763


Q ss_pred             H
Q 018446          269 A  269 (355)
Q Consensus       269 a  269 (355)
                      -
T Consensus       433 r  433 (511)
T 1kbi_A          433 R  433 (511)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=88.99  E-value=0.44  Score=44.29  Aligned_cols=74  Identities=14%  Similarity=0.069  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHcC-ceEEEEec--------cCC----------CCC---C------CHHHHHHHHhcCC-CCCeeccccc
Q 018446          198 DPVEIARSYEKGG-AACLSILT--------DEK----------YFK---G------SFENLEAVRSAGV-KCPLLCKEFI  248 (355)
Q Consensus       198 Dp~~iA~~Ye~~G-AaaISVLT--------D~~----------fF~---G------S~edL~~VR~a~v-~lPVLrKDFI  248 (355)
                      +..++|+..+++| |++|.|-.        |..          .++   |      +++.+..++++ + ++||+.-==|
T Consensus       175 ~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~-~~~ipvi~~GGI  253 (314)
T 2e6f_A          175 HFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRR-CPDKLVFGCGGV  253 (314)
T ss_dssp             HHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHH-CTTSEEEEESSC
T ss_pred             HHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHh-cCCCCEEEECCC
Confidence            3455688899999 99998642        210          122   3      37888999886 7 8999987777


Q ss_pred             cCHHHHHHHHHcCCcchHHHHhcC
Q 018446          249 VDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       249 IdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      -++-++.++..+|||+|-+=-+++
T Consensus       254 ~~~~da~~~l~~GAd~V~ig~~~l  277 (314)
T 2e6f_A          254 YSGEDAFLHILAGASMVQVGTALQ  277 (314)
T ss_dssp             CSHHHHHHHHHHTCSSEEECHHHH
T ss_pred             CCHHHHHHHHHcCCCEEEEchhhH
Confidence            789999999999999998766666

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=88.95  E-value=0.25  Score=47.98  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=60.5

Q ss_pred             CCCCCCHHHHHHHHHHcCceEEEEe-------------ccCC------CCCC---------CHHHHHHHHhcCC--CCCe
Q 018446          193 LREDFDPVEIARSYEKGGAACLSIL-------------TDEK------YFKG---------SFENLEAVRSAGV--KCPL  242 (355)
Q Consensus       193 I~~~~Dp~~iA~~Ye~~GAaaISVL-------------TD~~------fF~G---------S~edL~~VR~a~v--~lPV  242 (355)
                      |++++|..++|+..+.+||++|+..             ++..      -++|         +++.+..++++ +  ++||
T Consensus       200 i~p~~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~-~~~~ipI  278 (345)
T 3oix_A          200 LPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKR-LNPSIQI  278 (345)
T ss_dssp             ECCCCCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTT-SCTTSEE
T ss_pred             ECCCCCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHH-cCCCCcE
Confidence            4556799999999999999887632             1111      1333         26888999986 6  7999


Q ss_pred             eccccccCHHHHHHHHHcCCcchHHHHh
Q 018446          243 LCKEFIVDAWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       243 LrKDFIIdpyQI~eAr~~GADAVLLIaa  270 (355)
                      +.-==|-++-++.++..+|||+|.+=-+
T Consensus       279 Ig~GGI~s~~da~~~l~aGAd~V~igra  306 (345)
T 3oix_A          279 IGTGGVXTGRDAFEHILCGASMVQIGTA  306 (345)
T ss_dssp             EEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred             EEECCCCChHHHHHHHHhCCCEEEEChH
Confidence            9999999999999999999999987555

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=88.94  E-value=0.13  Score=45.73  Aligned_cols=97  Identities=8%  Similarity=-0.017  Sum_probs=63.1

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHH-HHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHH
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFE-NLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD  276 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~e-dL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~  276 (355)
                      .+.++...++|+.+|-+- ++.   -+.+ .+..+++.  ....|++-.|      ++..|..+|||.|-|     +.++
T Consensus        16 ~~~~~~a~~~Gv~~v~lr-~k~---~~~~~~~~~i~~l~~~~~~~livnd------~~~~A~~~gadgvhl-----~~~~   80 (210)
T 3ceu_A           16 DKIITALFEEGLDILHLR-KPE---TPAMYSERLLTLIPEKYHRRIVTHE------HFYLKEEFNLMGIHL-----NARN   80 (210)
T ss_dssp             HHHHHHHHHTTCCEEEEC-CSS---CCHHHHHHHHHHSCGGGGGGEEESS------CTTHHHHTTCSEEEC-----CSSS
T ss_pred             HHHHHHHHHCCCCEEEEc-cCC---CCHHHHHHHHHHHHHHhCCeEEEeC------CHHHHHHcCCCEEEE-----Cccc
Confidence            467777788999999654 543   2333 33344432  1234554443      336788999999944     4433


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          277 IRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                      +.    .+...++-..+-+||.+|+.+|. . |++.|++-.
T Consensus        81 ~~----~~~~~~~~ig~s~~t~~e~~~A~-~-GaDyv~~g~  115 (210)
T 3ceu_A           81 PS----EPHDYAGHVSCSCHSVEEVKNRK-H-FYDYVFMSP  115 (210)
T ss_dssp             CS----CCTTCCSEEEEEECSHHHHHTTG-G-GSSEEEECC
T ss_pred             cc----cccccCCEEEEecCCHHHHHHHh-h-CCCEEEECC
Confidence            31    12224888889999999999997 6 999999643

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=88.76  E-value=0.22  Score=45.96  Aligned_cols=123  Identities=11%  Similarity=0.015  Sum_probs=81.2

Q ss_pred             cCCCCCCCCCCC-CHHHHHHHHHHcCceEEEEec-cCCCC---CCCHHHHHHHHhcCC--CCCeeccccccCHHHHHHHH
Q 018446          186 ASPSRGILREDF-DPVEIARSYEKGGAACLSILT-DEKYF---KGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYAR  258 (355)
Q Consensus       186 aSPSkG~I~~~~-Dp~~iA~~Ye~~GAaaISVLT-D~~fF---~GS~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr  258 (355)
                      -|||  ++.-|| +..+..+..+++||+.+=+=. |..|.   .=.+..++.+|+. +  ++.++..|-   .+.+..+.
T Consensus        16 i~ps--ila~D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~~~v~~lr~~-~~~DvhLMv~~p---~~~i~~~~   89 (237)
T 3cu2_A           16 LSVG--ILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFPTH-CFKDVHLMVRNQ---LEVAKAVV   89 (237)
T ss_dssp             EEEE--GGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCTHHHHTSCTT-SEEEEEEECSCH---HHHHHHHH
T ss_pred             EEEe--eeeCCcccHHHHHHHHHHcCCCEEEEEEecCccccchhhhHHHHHHHhhh-CCCCeEEEEECH---HHHHHHHH
Confidence            4676  356555 566777888899999854332 54433   2223667777653 3  333332221   35678889


Q ss_pred             HcCCcchHHHHhcCCHHHHHHHHHHHHHc---------CCcEEEEe--CCHHHHHHHhccCCCeEEEeeC
Q 018446          259 TKGADAVLLIAAVLPDLDIRYMTKICKLL---------GLTALVEV--HDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       259 ~~GADAVLLIaaiL~~~~L~~L~~~A~~L---------GLeaLVEV--H~~eELerAl~l~ga~iIGINN  317 (355)
                      .+|||.|.+.+..-  ..+...++.++++         |+.+-|.+  +|..|.-+.+. ++++.|++=.
T Consensus        90 ~aGAd~itvH~ea~--~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l-~~~D~vlvMs  156 (237)
T 3cu2_A           90 ANGANLVTLQLEQY--HDFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYL-DQIDVIQLLT  156 (237)
T ss_dssp             HTTCSEEEEETTCT--TSHHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTT-TTCSEEEEES
T ss_pred             HcCCCEEEEecCCc--ccHHHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHh-hcCceeeeee
Confidence            99999988877664  3588899999999         99999999  56555444333 3789997733

>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7

Probab=88.68  E-value=0.84  Score=40.52  Aligned_cols=64  Identities=19%  Similarity=0.283  Sum_probs=47.9

Q ss_pred             HHHHHHHHcCCcchHHHHhcCCH-HHHHHHHHHHHHcCCcEEEEeCC------HHHHHHHhccC---CCeEEEee
Q 018446          252 WQIYYARTKGADAVLLIAAVLPD-LDIRYMTKICKLLGLTALVEVHD------EREMDRVLGIE---GIELIGIN  316 (355)
Q Consensus       252 yQI~eAr~~GADAVLLIaaiL~~-~~L~~L~~~A~~LGLeaLVEVH~------~eELerAl~l~---ga~iIGIN  316 (355)
                      -.|..|..+||..|.+...-... ..|..+.++|.+.|+...+|-|.      .+++.+.++.-   +.+ +|++
T Consensus        88 ~~i~~A~~lGa~~v~~~~g~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~ll~~v~~~~~~-vg~~  161 (264)
T 1yx1_A           88 PTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLERFFRLAERQQLD-LAMT  161 (264)
T ss_dssp             HHHHHHHHTTCSEEEEEEECCCSSCCHHHHHHHHTTSSCEEEEECCSSHHHHCHHHHHHHHHHHHHTTCS-EEEE
T ss_pred             HHHHHHHHcCCCEEEEecCCCCcHHHHHHHHHHHHhcCCEEEEecCCCCCCCCHHHHHHHHHHHHhcCCC-eEEE
Confidence            45777889999988775544332 37899999999999999999985      47777766532   346 7774

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=88.68  E-value=1.1  Score=42.27  Aligned_cols=50  Identities=22%  Similarity=0.407  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       274 ~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      .+.|+.|.++|+++||..+.|+||.+.++.+.++  ++++-|-.|++..+..
T Consensus        88 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~--vd~~kIgs~~~~n~~l  137 (276)
T 1vs1_A           88 LEGLKLLRRAGDEAGLPVVTEVLDPRHVETVSRY--ADMLQIGARNMQNFPL  137 (276)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECCCGGGHHHHHHH--CSEEEECGGGTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHh--CCeEEECcccccCHHH
Confidence            6789999999999999999999999999999886  7999999999987754

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=88.67  E-value=0.48  Score=40.87  Aligned_cols=74  Identities=23%  Similarity=0.184  Sum_probs=54.6

Q ss_pred             CHHHHHHHHHHcCceEEEEec--c----CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446          198 DPVEIARSYEKGGAACLSILT--D----EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT--D----~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      ++.++. .+.+.||+.|-+-+  +    +.+...+++.+..+++. .++||+. +..|.+-++.++..+|||+|.+.-++
T Consensus       117 t~~e~~-~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~pvia-~GGI~~~nv~~~~~~Ga~gv~vgs~i  193 (215)
T 1xi3_A          117 SLEEAL-EAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES-VKIPVVA-IGGINKDNAREVLKTGVDGIAVISAV  193 (215)
T ss_dssp             SHHHHH-HHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHH-CSSCEEE-ESSCCTTTHHHHHTTTCSEEEESHHH
T ss_pred             CHHHHH-HHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh-CCCCEEE-ECCcCHHHHHHHHHcCCCEEEEhHHH
Confidence            566644 45567999987632  1    11123367888888875 6899877 88999999999999999999988887


Q ss_pred             CCH
Q 018446          272 LPD  274 (355)
Q Consensus       272 L~~  274 (355)
                      ...
T Consensus       194 ~~~  196 (215)
T 1xi3_A          194 MGA  196 (215)
T ss_dssp             HTS
T ss_pred             hCC
Confidence            753

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=88.52  E-value=0.38  Score=44.08  Aligned_cols=128  Identities=10%  Similarity=0.072  Sum_probs=88.7

Q ss_pred             CCCCCCCCCCC-CHHHHHHHHHHcCceEE--EEeccCCC---CCCCHHHHHHHHhcCC-CCCeeccccccCHHHHHHHHH
Q 018446          187 SPSRGILREDF-DPVEIARSYEKGGAACL--SILTDEKY---FKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYART  259 (355)
Q Consensus       187 SPSkG~I~~~~-Dp~~iA~~Ye~~GAaaI--SVLTD~~f---F~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~  259 (355)
                      |||  +++-|| +..+-.+..+++||+.+  =|. |..|   +.=....++.+|+. + +.|+.+.=.|-||....+...
T Consensus         9 ~pS--ila~D~~~l~~~i~~~~~~g~d~iHvDvm-Dg~fvpn~t~G~~~v~~lr~~-~p~~~~dvhLmv~dp~~~i~~~~   84 (227)
T 1tqx_A            9 APS--VLASNISKLAEETQRMESLGAEWIHLDVM-DMHFVPNLSFGPPVINNLKKY-TKSIFFDVHLMVEYPEKYVPLLK   84 (227)
T ss_dssp             EEB--GGGSCGGGHHHHHHHHHHTTCSEEEEEEE-BSSSSSCBCCCHHHHHHHGGG-CSSCEEEEEEESSCGGGGGGGCT
T ss_pred             Eee--hhcCChhhHHHHHHHHHHcCCCEEEEEEE-eCCcCcchhcCHHHHHHHHHh-CCCCcEEEEEEEcCHHHHHHHHH
Confidence            677  356554 66677778888899984  444 5442   33347889999986 6 789888777888776666666


Q ss_pred             cCCcchHHHHhcCCHHHHHHHHH---HHHHcCCcEEEEeC--C-HHHHHHHhccCCCeEEEeeCCCC
Q 018446          260 KGADAVLLIAAVLPDLDIRYMTK---ICKLLGLTALVEVH--D-EREMDRVLGIEGIELIGINNRNL  320 (355)
Q Consensus       260 ~GADAVLLIaaiL~~~~L~~L~~---~A~~LGLeaLVEVH--~-~eELerAl~l~ga~iIGINNRdL  320 (355)
                      . ||.|...+..-. +.+...++   .++++|+.+-|.++  | .+.++..+.+..++.|.+=..|.
T Consensus        85 ~-Ad~itvH~ea~~-~~~~~~i~~~~~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~p  149 (227)
T 1tqx_A           85 T-SNQLTFHFEALN-EDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEP  149 (227)
T ss_dssp             T-SSEEEEEGGGGT-TCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCT
T ss_pred             h-CCEEEEeecCCc-cCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeecc
Confidence            6 999987776642 24677788   99999999999993  3 34556666531388884444443

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A

Probab=88.46  E-value=2.2  Score=40.56  Aligned_cols=91  Identities=16%  Similarity=0.239  Sum_probs=70.6

Q ss_pred             HHHHHHHHHH--cCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCH
Q 018446          199 PVEIARSYEK--GGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPD  274 (355)
Q Consensus       199 p~~iA~~Ye~--~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~  274 (355)
                      ..++++..++  .|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+ +..+=+-
T Consensus       201 a~~~~~~l~~~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi  275 (366)
T 1tkk_A          201 AVTAIRKMEDAGLGIELV----EQPVHKDDLAGLKKVTDA-TDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGI  275 (366)
T ss_dssp             HHHHHHHHHHTTCCEEEE----ECCSCTTCHHHHHHHHHH-CSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSH
T ss_pred             HHHHHHHHhhcCCCceEE----ECCCCcccHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehhhhcCH
Confidence            3467777877  664433    444566899999999986 899999999999999999887766 788877 4444356


Q ss_pred             HHHHHHHHHHHHcCCcEEEE
Q 018446          275 LDIRYMTKICKLLGLTALVE  294 (355)
Q Consensus       275 ~~L~~L~~~A~~LGLeaLVE  294 (355)
                      .+...+.++|+..|+.+.+-
T Consensus       276 t~~~~i~~~A~~~g~~~~~~  295 (366)
T 1tkk_A          276 SGAEKINAMAEACGVECMVG  295 (366)
T ss_dssp             HHHHHHHHHHHHHTCCEEEC
T ss_pred             HHHHHHHHHHHHcCCcEEec
Confidence            67788999999999997654

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=88.45  E-value=0.76  Score=41.65  Aligned_cols=89  Identities=21%  Similarity=0.249  Sum_probs=61.4

Q ss_pred             ceEEeEeeecCCCCCC-CCCCCCH---HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccC--
Q 018446          177 PALIAEVKKASPSRGI-LREDFDP---VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD--  250 (355)
Q Consensus       177 ~aVIAEvKRaSPSkG~-I~~~~Dp---~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIId--  250 (355)
                      ..+|.|+-   |. |. +..+.++   .+.++..++.||+.|.+-     |.++++.+..+++. +++||+.-==|-.  
T Consensus       146 ~~viv~~~---~~-G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~-----~~~~~~~l~~i~~~-~~ipvva~GGi~~~~  215 (273)
T 2qjg_A          146 MPLIAMMY---PR-GKHIQNERDPELVAHAARLGAELGADIVKTS-----YTGDIDSFRDVVKG-CPAPVVVAGGPKTNT  215 (273)
T ss_dssp             CCEEEEEE---EC-STTCSCTTCHHHHHHHHHHHHHTTCSEEEEC-----CCSSHHHHHHHHHH-CSSCEEEECCSCCSS
T ss_pred             CCEEEEeC---CC-CcccCCCCCHhHHHHHHHHHHHcCCCEEEEC-----CCCCHHHHHHHHHh-CCCCEEEEeCCCCCC
Confidence            34777763   32 33 2233444   455678889999988864     36889999999985 7899876432321  


Q ss_pred             HHH----HHHHHHcCCcchHHHHhcCCHH
Q 018446          251 AWQ----IYYARTKGADAVLLIAAVLPDL  275 (355)
Q Consensus       251 pyQ----I~eAr~~GADAVLLIaaiL~~~  275 (355)
                      +-+    +.++..+|||+|...-+++...
T Consensus       216 ~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~  244 (273)
T 2qjg_A          216 DEEFLQMIKDAMEAGAAGVAVGRNIFQHD  244 (273)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECCHHHHTSS
T ss_pred             HHHHHHHHHHHHHcCCcEEEeeHHhhCCC
Confidence            333    7788889999999988887543

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=88.31  E-value=1.2  Score=41.75  Aligned_cols=67  Identities=16%  Similarity=0.261  Sum_probs=42.7

Q ss_pred             cCHHHHHHHHHcCCc--------chHHH---HhcCCHHHHHHHHHHHHH-cC--CcEEEEeCCHHHHHHHhccCCCeEEE
Q 018446          249 VDAWQIYYARTKGAD--------AVLLI---AAVLPDLDIRYMTKICKL-LG--LTALVEVHDEREMDRVLGIEGIELIG  314 (355)
Q Consensus       249 IdpyQI~eAr~~GAD--------AVLLI---aaiL~~~~L~~L~~~A~~-LG--LeaLVEVH~~eELerAl~l~ga~iIG  314 (355)
                      +-.++-|.++.-|++        +|++-   ....+.  ...-++.+++ ++  +...|||+|.+|+..|+.. |+++|+
T Consensus       131 ~r~~~~~A~~~gG~~~hr~~l~d~vlik~~Hi~~~g~--~~~ai~~~r~~~~~~~~i~vev~tlee~~~A~~a-GaD~I~  207 (273)
T 2b7n_A          131 LRIFEKYSVLNGGASNHRLGLDDALMLKDTHLRHVKD--LKSFLTHARKNLPFTAKIEIECESFEEAKNAMNA-GADIVM  207 (273)
T ss_dssp             CHHHHHHHHHTTTCCCCCSSTTTCEEECHHHHTTCSS--HHHHHHHHGGGSCTTCCEEEEESSHHHHHHHHHH-TCSEEE
T ss_pred             hHHHHHHHHHhCCCcceEcCccceEEeeCCHHHHhCC--HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc-CCCEEE
Confidence            334555666667855        55521   111121  1223344444 44  5789999999999999996 999999


Q ss_pred             eeCC
Q 018446          315 INNR  318 (355)
Q Consensus       315 INNR  318 (355)
                      +.|-
T Consensus       208 ld~~  211 (273)
T 2b7n_A          208 CDNL  211 (273)
T ss_dssp             EETC
T ss_pred             ECCC
Confidence            9873

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=88.24  E-value=0.9  Score=41.99  Aligned_cols=71  Identities=25%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             HHHHHHHHcCceEEEEe---ccCCCCCCCHHHHHHHHhcCCCCCeecccccc-CHHHHHHHHHcCCcchHHHHhcCC
Q 018446          201 EIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVL---TD~~fF~GS~edL~~VR~a~v~lPVLrKDFII-dpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      +.++..++.|+..|-.+   |....=..+.+.|+.+|+. +++||+. +|.| ++-|+.++..+|||+|+..-++..
T Consensus       138 ~~a~~~~~~gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~-~~iPviv-~gGI~t~eda~~~~~~GAdgViVGSAi~~  212 (264)
T 1xm3_A          138 VLARKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQ-AKVPVIV-DAGIGSPKDAAYAMELGADGVLLNTAVSG  212 (264)
T ss_dssp             HHHHHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEE-ESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             HHHHHHHHhCCCEEEECCcccCCCCCCCCHHHHHHHHhc-CCCCEEE-EeCCCCHHHHHHHHHcCCCEEEEcHHHhC
Confidence            35666777888887221   1111000148899999985 7999886 5777 599999999999999999888774

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=88.19  E-value=0.53  Score=45.89  Aligned_cols=72  Identities=25%  Similarity=0.163  Sum_probs=54.0

Q ss_pred             HHHHHHHHHcCceEEEEec--cCC--CCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          200 VEIARSYEKGGAACLSILT--DEK--YFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLT--D~~--fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      .+.|+...++||++|.|-.  ...  +-..+++.|..++++ ++.||+.-==|-++-.+.++..+|||+|.+=-++|
T Consensus       236 ~e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~-~~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l  311 (380)
T 1p4c_A          236 AEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAK-TGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATL  311 (380)
T ss_dssp             HHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHH-HCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHH-cCCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHH
Confidence            3578888999999999921  111  112236778888875 67899988888899999999999999997644443

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=88.18  E-value=1.2  Score=48.47  Aligned_cols=116  Identities=23%  Similarity=0.263  Sum_probs=76.1

Q ss_pred             HHHHHHHHHcCceEEEEeccCCC------CCCC--------HHHHHHHHhcCCCCCeecccc--ccCHHHHH-HHHHcCC
Q 018446          200 VEIARSYEKGGAACLSILTDEKY------FKGS--------FENLEAVRSAGVKCPLLCKEF--IVDAWQIY-YARTKGA  262 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~f------F~GS--------~edL~~VR~a~v~lPVLrKDF--IIdpyQI~-eAr~~GA  262 (355)
                      .+.|+..+++||++|-+.-.-..      ++++        .+.+..+|++ +++||+.|=-  +.|..++. .+..+||
T Consensus       651 ~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~-~~~Pv~vK~~~~~~~~~~~a~~~~~~G~  729 (1025)
T 1gte_A          651 MELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQA-VQIPFFAKLTPNVTDIVSIARAAKEGGA  729 (1025)
T ss_dssp             HHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHH-CSSCEEEEECSCSSCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHh-hCCceEEEeCCChHHHHHHHHHHHHcCC
Confidence            34555666789999999754222      2333        3477788886 7999998721  12444543 4457899


Q ss_pred             cchHHHHh--------------------------cC-CHHH----HHHHHHHHHHc-CCcEEE--EeCCHHHHHHHhccC
Q 018446          263 DAVLLIAA--------------------------VL-PDLD----IRYMTKICKLL-GLTALV--EVHDEREMDRVLGIE  308 (355)
Q Consensus       263 DAVLLIaa--------------------------iL-~~~~----L~~L~~~A~~L-GLeaLV--EVH~~eELerAl~l~  308 (355)
                      |+|.++-.                          -+ ++..    +..+.+++..+ ++..+.  -|+|.+++.+++.+ 
T Consensus       730 d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~-  808 (1025)
T 1gte_A          730 DGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHS-  808 (1025)
T ss_dssp             SEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHT-
T ss_pred             CEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHc-
Confidence            99988310                          01 1111    44556667777 666666  48999999999996 


Q ss_pred             CCeEEEeeC
Q 018446          309 GIELIGINN  317 (355)
Q Consensus       309 ga~iIGINN  317 (355)
                      ||+.|+|-.
T Consensus       809 Ga~~v~vg~  817 (1025)
T 1gte_A          809 GASVLQVCS  817 (1025)
T ss_dssp             TCSEEEESH
T ss_pred             CCCEEEEee
Confidence            999999965

>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*

Probab=87.99  E-value=1.2  Score=42.71  Aligned_cols=89  Identities=12%  Similarity=0.101  Sum_probs=71.5

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCHHHH
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDLDI  277 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~~L  277 (355)
                      ..+++.+++.|..-|    |+.+-.++++.+..+|+. +++||..-+-+.+++++.+....| +|.|.+ +..+ +-.+.
T Consensus       202 ~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~-Git~~  275 (367)
T 3dg3_A          202 LRAMREMADLDLLFA----EELCPADDVLSRRRLVGQ-LDMPFIADESVPTPADVTREVLGGSATAISIKTART-GFTGS  275 (367)
T ss_dssp             HHHHHHTTTSCCSCE----ESCSCTTSHHHHHHHHHH-CSSCEEECTTCSSHHHHHHHHHHTSCSEEEECHHHH-TTHHH
T ss_pred             HHHHHHHHHhCCCEE----ECCCCcccHHHHHHHHHh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEEeehhhh-hHHHH
Confidence            456777777775443    344566889999999986 899999999999999999988777 788877 5566 77788


Q ss_pred             HHHHHHHHHcCCcEEEE
Q 018446          278 RYMTKICKLLGLTALVE  294 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVE  294 (355)
                      ..+..+|+..|+.+.+-
T Consensus       276 ~~ia~~A~~~gi~~~~~  292 (367)
T 3dg3_A          276 TRVHHLAEGLGLDMVMG  292 (367)
T ss_dssp             HHHHHHHHHHTCEEEEC
T ss_pred             HHHHHHHHHcCCeEEEC
Confidence            88999999999997653

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=87.95  E-value=0.71  Score=43.88  Aligned_cols=75  Identities=19%  Similarity=0.139  Sum_probs=53.5

Q ss_pred             CCHHHHHHHHHHcCceEEEEe-c-----------cCC------CCC--CCHHHHHHHHhcCCCCCeeccccccCHHHHHH
Q 018446          197 FDPVEIARSYEKGGAACLSIL-T-----------DEK------YFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY  256 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVL-T-----------D~~------fF~--GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~e  256 (355)
                      +++ +.|+..+++||++|.|- +           .+.      ...  -+.+.|..++++..++||+.-==|-++-++.+
T Consensus       190 ~~~-~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k  268 (349)
T 1p0k_A          190 MSK-ASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAK  268 (349)
T ss_dssp             CCH-HHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHH
T ss_pred             CCH-HHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHH
Confidence            344 56888888999999984 1           110      121  24566777877523899988777778999999


Q ss_pred             HHHcCCcchHHHHhcC
Q 018446          257 ARTKGADAVLLIAAVL  272 (355)
Q Consensus       257 Ar~~GADAVLLIaaiL  272 (355)
                      +..+|||+|.+=-+++
T Consensus       269 ~l~~GAd~V~iG~~~l  284 (349)
T 1p0k_A          269 AIALGASCTGMAGHFL  284 (349)
T ss_dssp             HHHTTCSEEEECHHHH
T ss_pred             HHHcCCCEEEEcHHHH
Confidence            9999999998755554

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=87.93  E-value=0.12  Score=52.00  Aligned_cols=74  Identities=14%  Similarity=0.121  Sum_probs=56.1

Q ss_pred             HHHHHHHHHcCceEEEEeccCCC------C--CC-----CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH
Q 018446          200 VEIARSYEKGGAACLSILTDEKY------F--KG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL  266 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~f------F--~G-----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL  266 (355)
                      .+.|+..+++||++|.|-..+..      +  -|     .+..+..+++. +++||+.-==|-++..+.+|.++|||+|.
T Consensus       307 ~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~-~~ipVia~GGI~~~~di~kala~GAd~V~  385 (514)
T 1jcn_A          307 AAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARR-FGVPIIADGGIQTVGHVVKALALGASTVM  385 (514)
T ss_dssp             HHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGG-GTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHcCCCeee
Confidence            45788889999999988221110      1  12     35667777775 78999988778899999999999999999


Q ss_pred             HHHhcCCH
Q 018446          267 LIAAVLPD  274 (355)
Q Consensus       267 LIaaiL~~  274 (355)
                      +--++|..
T Consensus       386 iG~~~l~~  393 (514)
T 1jcn_A          386 MGSLLAAT  393 (514)
T ss_dssp             ESTTTTTS
T ss_pred             ECHHHHcC
Confidence            88777754

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=87.91  E-value=0.68  Score=45.34  Aligned_cols=74  Identities=15%  Similarity=0.074  Sum_probs=51.4

Q ss_pred             HHHHHHHHcCceEEEEeccCCC----------CCCCHHHHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446          201 EIARSYEKGGAACLSILTDEKY----------FKGSFENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLI  268 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD~~f----------F~GS~edL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI  268 (355)
                      +.|+..+++||++|-|=.++-.          -...++.|..++++  .+++||+.-==|-++.+|.+|..+|||+|.+-
T Consensus       161 e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG  240 (366)
T 4fo4_A          161 EGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG  240 (366)
T ss_dssp             HHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHcCCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence            5778888899999998211111          01123445555431  26899987555559999999999999999988


Q ss_pred             HhcCCH
Q 018446          269 AAVLPD  274 (355)
Q Consensus       269 aaiL~~  274 (355)
                      -+++..
T Consensus       241 s~f~~t  246 (366)
T 4fo4_A          241 SMFAGT  246 (366)
T ss_dssp             TTTTTB
T ss_pred             hHhhcC
Confidence            777754

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=87.89  E-value=2.5  Score=40.05  Aligned_cols=120  Identities=12%  Similarity=0.179  Sum_probs=88.0

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc----CC
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV----LP  273 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai----L~  273 (355)
                      +..++++.+.+.|++.|.+-     |+-..+.+..+++.  .+||+.+  +-+.-+...+..+|||+|++--.-    .+
T Consensus        90 ~~~~~~~~~~~~g~d~V~l~-----~g~p~~~~~~l~~~--g~~v~~~--v~s~~~a~~a~~~GaD~i~v~g~~~GG~~G  160 (326)
T 3bo9_A           90 WADDLVKVCIEEKVPVVTFG-----AGNPTKYIRELKEN--GTKVIPV--VASDSLARMVERAGADAVIAEGMESGGHIG  160 (326)
T ss_dssp             THHHHHHHHHHTTCSEEEEE-----SSCCHHHHHHHHHT--TCEEEEE--ESSHHHHHHHHHTTCSCEEEECTTSSEECC
T ss_pred             CHHHHHHHHHHCCCCEEEEC-----CCCcHHHHHHHHHc--CCcEEEE--cCCHHHHHHHHHcCCCEEEEECCCCCccCC
Confidence            45778888889999999863     33346778888874  6788863  456777778889999998884311    11


Q ss_pred             -HHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCCCccccCh
Q 018446          274 -DLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINNRNLETFEVDN  327 (355)
Q Consensus       274 -~~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINNRdL~TfevDl  327 (355)
                       ...+..+-++...+++..++.  ++|.+++.+++.+ ||+-+.|..+=+.+-+.+.
T Consensus       161 ~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~-GA~gV~vGs~~~~~~e~~~  216 (326)
T 3bo9_A          161 EVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFAL-GAEAVQMGTRFVASVESDV  216 (326)
T ss_dssp             SSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHH-TCSEEEESHHHHTBSSCCS
T ss_pred             CccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHh-CCCEEEechHHHcCccccc
Confidence             124444555666677776664  8999999999997 9999999999888877543

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}

Probab=87.85  E-value=1.8  Score=41.78  Aligned_cols=91  Identities=15%  Similarity=0.227  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~~  276 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+ +..+=+-.+
T Consensus       205 a~~~~~~l~~~~i~~i----EqP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~  279 (397)
T 2qde_A          205 ALTTIRALEKYNLSKI----EQPLPAWDLDGMARLRGK-VATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLK  279 (397)
T ss_dssp             HHHHHHHHGGGCCSCE----ECCSCTTCHHHHHHHHTT-CSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred             HHHHHHHHHhCCCCEE----ECCCChhhHHHHHHHHhh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHH
Confidence            3457777888787654    455666789999999985 899999999999999999888766 788877 444435557


Q ss_pred             HHHHHHHHHHcCCcEEEE
Q 018446          277 IRYMTKICKLLGLTALVE  294 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVE  294 (355)
                      ...+.++|+..|+.+.+-
T Consensus       280 ~~~i~~~A~~~g~~~~~~  297 (397)
T 2qde_A          280 AQRWLTLARLANLPVICG  297 (397)
T ss_dssp             HHHHHHHHHHHTCCEEEC
T ss_pred             HHHHHHHHHHcCCeEEEe
Confidence            788999999999996543

>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*

Probab=87.84  E-value=1.7  Score=42.22  Aligned_cols=97  Identities=13%  Similarity=0.058  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~~  276 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+ +..+=+-.+
T Consensus       236 ai~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite  310 (398)
T 2pp0_A          236 AIRMGRKMEQFNLIWI----EEPLDAYDIEGHAQLAAA-LDTPIATGEMLTSFREHEQLILGNASDFVQPDAPRVGGISP  310 (398)
T ss_dssp             HHHHHHHHGGGTCSCE----ECCSCTTCHHHHHHHHHH-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHH
T ss_pred             HHHHHHHHHHcCCcee----eCCCChhhHHHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence            3466777777786643    455566789999999986 899999999999999999998777 788877 444435567


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCHHHHH
Q 018446          277 IRYMTKICKLLGLTALVEVHDEREMD  302 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~eELe  302 (355)
                      ...+.++|+..|+.+.  +|..-|.-
T Consensus       311 ~~~i~~~A~~~gi~~~--~h~~~~~~  334 (398)
T 2pp0_A          311 FLKIMDLAAKHGRKLA--PHFAMEVH  334 (398)
T ss_dssp             HHHHHHHHHHTTCEEC--CCSCHHHH
T ss_pred             HHHHHHHHHHcCCeEe--ecCccHHH
Confidence            7889999999999876  67765543

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=87.78  E-value=1.4  Score=42.56  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=71.5

Q ss_pred             CHHHHHHHHHHcCceEEEE----------------------------e-ccCCC------CCCCHHHHHHHHhcCCCCCe
Q 018446          198 DPVEIARSYEKGGAACLSI----------------------------L-TDEKY------FKGSFENLEAVRSAGVKCPL  242 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISV----------------------------L-TD~~f------F~GS~edL~~VR~a~v~lPV  242 (355)
                      |..+..+... .||+.|+.                            + |+...      .+=+++.|..+++. +++||
T Consensus       124 ~l~EAlrri~-eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~-~~IPV  201 (291)
T 3o07_A          124 DLGEALRRIN-EGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEK-GKLPV  201 (291)
T ss_dssp             SHHHHHHHHH-HTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH-TSCSS
T ss_pred             CHHHHHHHHH-CCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHc-cCCCE
Confidence            5666555555 48999997                            3 54431      36678999999986 89999


Q ss_pred             ec--cccccCHHHHHHHHHcCCcchHHHHhcCC---HHH-HHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEee
Q 018446          243 LC--KEFIVDAWQIYYARTKGADAVLLIAAVLP---DLD-IRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       243 Lr--KDFIIdpyQI~eAr~~GADAVLLIaaiL~---~~~-L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGIN  316 (355)
                      +.  .==|-+|-+..++..+|||+|++.-+++.   +.. .+.|.+... ..       .|.+-|-.+-.--|-.+.|||
T Consensus       202 V~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~-~~-------~~~~~~~~~s~~l~~~m~g~~  273 (291)
T 3o07_A          202 VNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATT-HF-------DNPSKLLEVSSDLGELMGGVS  273 (291)
T ss_dssp             CEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHH-TT-------TCHHHHHHHHSSCCCC-----
T ss_pred             EEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHH-hc-------cCHHHHHHHHhcccccccCcc
Confidence            64  44455899999999999999999999986   433 333433333 22       566666665432266799999


Q ss_pred             CCCCCc
Q 018446          317 NRNLET  322 (355)
Q Consensus       317 NRdL~T  322 (355)
                      ..+|..
T Consensus       274 ~~~~~~  279 (291)
T 3o07_A          274 IESISH  279 (291)
T ss_dssp             ------
T ss_pred             hhhhcc
Confidence            988843

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=87.71  E-value=1.2  Score=42.43  Aligned_cols=66  Identities=23%  Similarity=0.290  Sum_probs=43.3

Q ss_pred             cCHHHHHHHHHcCCc--------chHHHHhcCCHHHH-------HHHHHHHHHcC--CcEEEEeCCHHHHHHHhccCCCe
Q 018446          249 VDAWQIYYARTKGAD--------AVLLIAAVLPDLDI-------RYMTKICKLLG--LTALVEVHDEREMDRVLGIEGIE  311 (355)
Q Consensus       249 IdpyQI~eAr~~GAD--------AVLLIaaiL~~~~L-------~~L~~~A~~LG--LeaLVEVH~~eELerAl~l~ga~  311 (355)
                      +-.++-|.++.-|++        +|+     +.+..+       +.+-.+.+.++  +...|||+|.+|+..|+.. |++
T Consensus       148 ~r~~e~~A~~~GG~~~hr~~l~d~vl-----ik~nh~~~~g~i~~ai~~~r~~~~~~~~i~vev~tlee~~~A~~a-GaD  221 (294)
T 3c2e_A          148 LRRLEKYSMLVGGCDTHRYDLSSMVM-----LKDNHIWATGSITNAVKNARAVCGFAVKIEVECLSEDEATEAIEA-GAD  221 (294)
T ss_dssp             CHHHHHHHHHHTTCBCCCCSTTTSEE-----ECHHHHHHHSSHHHHHHHHHHHHCTTSCEEEECSSSHHHHHHHHH-TCS
T ss_pred             HHHHHHHHHHhCCCCceecCccceEE-----eecchhhhcCCHHHHHHHHHHhcCcCCeEEEecCCHHHHHHHHHc-CCC
Confidence            335666667777877        555     222222       22333333454  5789999999999999996 999


Q ss_pred             EEEeeCCCC
Q 018446          312 LIGINNRNL  320 (355)
Q Consensus       312 iIGINNRdL  320 (355)
                      +|++.|-++
T Consensus       222 ~I~ld~~~~  230 (294)
T 3c2e_A          222 VIMLDNFKG  230 (294)
T ss_dssp             EEECCC---
T ss_pred             EEEECCCCH
Confidence            999988543

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*

Probab=87.70  E-value=1.4  Score=41.95  Aligned_cols=92  Identities=13%  Similarity=0.141  Sum_probs=71.4

Q ss_pred             CHH-HHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCH
Q 018446          198 DPV-EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPD  274 (355)
Q Consensus       198 Dp~-~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~  274 (355)
                      +.. ++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+ ...+=+-
T Consensus       200 ~a~~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi  274 (369)
T 2p8b_A          200 ANTLTALRSLGHLNIDWI----EQPVIADDIDAMAHIRSK-TDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGI  274 (369)
T ss_dssp             HHHHHHHHTSTTSCCSCE----ECCBCTTCHHHHHHHHHT-CCSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSH
T ss_pred             HHHHHHHHHHHhCCCcEE----ECCCCcccHHHHHHHHHh-CCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeecchhCCH
Confidence            344 66777777776644    444566789999999985 899999999999999999988766 788877 4444355


Q ss_pred             HHHHHHHHHHHHcCCcEEEE
Q 018446          275 LDIRYMTKICKLLGLTALVE  294 (355)
Q Consensus       275 ~~L~~L~~~A~~LGLeaLVE  294 (355)
                      .+...+.++|+..|+.+.+-
T Consensus       275 t~~~~i~~~A~~~g~~~~~~  294 (369)
T 2p8b_A          275 YPAVKLAHQAEMAGIECQVG  294 (369)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHHHHHHcCCcEEec
Confidence            67788999999999997643

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=87.64  E-value=1.3  Score=43.43  Aligned_cols=50  Identities=20%  Similarity=0.447  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       274 ~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      .+.|+.|.++|+++||..+.|++|.+.++.+.++  ++++-|-.|++..|.+
T Consensus       156 ~egl~~l~~~~~e~Gl~~~te~~d~~~~~~l~~~--vd~lkIgAr~~~n~~L  205 (350)
T 1vr6_A          156 EKGLEYLREAADKYGMYVVTEALGEDDLPKVAEY--ADIIQIGARNAQNFRL  205 (350)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHH--CSEEEECGGGTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh--CCEEEECcccccCHHH
Confidence            5789999999999999999999999999999886  8999999999988754

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}

Probab=87.57  E-value=1  Score=43.41  Aligned_cols=93  Identities=13%  Similarity=0.138  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.+++++.+....| +|.|.+=+.-. +-.+
T Consensus       225 ai~~~~~l~~~~i~~i----E~P~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite  299 (403)
T 2ox4_A          225 AIQFAKAIEEFNIFFY----EEINTPLNPRLLKEAKKK-IDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCGGFTE  299 (403)
T ss_dssp             HHHHHHHHGGGCEEEE----ECCSCTTSTHHHHHHHHT-CCSCEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHTHHHH
T ss_pred             HHHHHHHHHhhCCCEE----eCCCChhhHHHHHHHHHh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence            3466777777775543    444666789999999985 899999999999999999998877 78887733333 3456


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCH
Q 018446          277 IRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ...+.++|+..|+.+.+  |+.
T Consensus       300 ~~~i~~~A~~~g~~~~~--h~~  319 (403)
T 2ox4_A          300 FKKIADMAHIFEVTVQA--HVA  319 (403)
T ss_dssp             HHHHHHHHHHTTCEECC--CCC
T ss_pred             HHHHHHHHHHcCCEEee--cCC
Confidence            67889999999999776  654

>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*

Probab=87.36  E-value=2  Score=40.90  Aligned_cols=92  Identities=14%  Similarity=0.139  Sum_probs=73.1

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHHH
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLDI  277 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~L  277 (355)
                      .++++..++.|..-|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+=+.-. +-.+.
T Consensus       199 ~~~~~~l~~~~i~~i----E~P~~~~~~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~  273 (368)
T 1sjd_A          199 APQLARLDPFGLLLI----EQPLEEEDVLGHAELARR-IQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEA  273 (368)
T ss_dssp             HHHHHTTGGGCCSEE----ECCSCTTCHHHHHHHHTT-CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHH
T ss_pred             HHHHHHHHhcCCCeE----eCCCChhhHHHHHHHHHh-CCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHH
Confidence            678888888886643    455667899999999985 899999999999999999988777 68877744444 45677


Q ss_pred             HHHHHHHHHcCCcEEEEeC
Q 018446          278 RYMTKICKLLGLTALVEVH  296 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVEVH  296 (355)
                      ..+.++|+..|+.+++--.
T Consensus       274 ~~i~~~A~~~g~~~~~~~~  292 (368)
T 1sjd_A          274 RRVHDVCAAHGIPVWCGGM  292 (368)
T ss_dssp             HHHHHHHHHTTCCEEECCC
T ss_pred             HHHHHHHHHcCCcEEeCCc
Confidence            8899999999999866433

>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}

Probab=87.35  E-value=1.8  Score=41.33  Aligned_cols=89  Identities=16%  Similarity=0.176  Sum_probs=68.8

Q ss_pred             HHHHHHH-HHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCHHH
Q 018446          200 VEIARSY-EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDLD  276 (355)
Q Consensus       200 ~~iA~~Y-e~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~~  276 (355)
                      .++++.+ ++.|. .   +-|| +-  +++.+..+|+. +++||..-+-+.++.++.++...| +|.|.+ +..+=+-.+
T Consensus       207 ~~~~~~l~~~~~i-~---iE~P-~~--~~~~~~~l~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~  278 (371)
T 2ps2_A          207 LRLLRLLPHGLDF-A---LEAP-CA--TWRECISLRRK-TDIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTR  278 (371)
T ss_dssp             HHHHHHSCTTCCC-E---EECC-BS--SHHHHHHHHTT-CCSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHH
T ss_pred             HHHHHHHHhhcCC-c---CcCC-cC--CHHHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHhCCCCEEEechhhcCCHHH
Confidence            3556666 66665 3   3444 33  99999999985 899999999999999999987776 688877 444445667


Q ss_pred             HHHHHHHHHHcCCcEEEEeC
Q 018446          277 IRYMTKICKLLGLTALVEVH  296 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH  296 (355)
                      ...+.++|+..|+.+.+-..
T Consensus       279 ~~~i~~~A~~~g~~~~~~~~  298 (371)
T 2ps2_A          279 GRRQRDICLAAGYSVSVQET  298 (371)
T ss_dssp             HHHHHHHHHHHTCEEEEECS
T ss_pred             HHHHHHHHHHcCCeEEecCC
Confidence            78899999999999987643

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=87.15  E-value=0.51  Score=44.20  Aligned_cols=120  Identities=23%  Similarity=0.257  Sum_probs=74.1

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCC-----------------------CCCHHHHH
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYF-----------------------KGSFENLE  231 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF-----------------------~GS~edL~  231 (355)
                      ++.++|.=+=.-.|+..      ...++++.++++ |++|=+=+  .|-                       .+.++.++
T Consensus        14 ~~~~li~~i~~GdP~~~------~~~~~~~~l~~~-aD~IElG~--PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~   84 (271)
T 1ujp_A           14 GRAALIPYLTAGFPSRE------GFLQAVEEVLPY-ADLLEIGL--PYSDPLGDGPVIQRASELALRKGMSVQGALELVR   84 (271)
T ss_dssp             TBCEEEEEEETTSSCHH------HHHHHHHHHGGG-CSSEEEEC--CCCC----CHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCceEEEEecCCCCChH------HHHHHHHHHHhc-CCEEEECC--CCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            34567776655555431      244677788887 88877632  111                       12367899


Q ss_pred             HHHhcCCCCCeeccc-c-ccC----HHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE--Ee-CCHHHHH
Q 018446          232 AVRSAGVKCPLLCKE-F-IVD----AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV--EV-HDEREMD  302 (355)
Q Consensus       232 ~VR~a~v~lPVLrKD-F-IId----pyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV--EV-H~~eELe  302 (355)
                      .+|+. +++||+.-. + .++    ..-+..+..+|||++++.  =|+.+++.++.+.+++.|++.+.  -- .+.+.++
T Consensus        85 ~ir~~-~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~--Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~  161 (271)
T 1ujp_A           85 EVRAL-TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILP--DLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIA  161 (271)
T ss_dssp             HHHHH-CCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECT--TCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHH
T ss_pred             HHHhc-CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEec--CCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHH
Confidence            99986 899977621 0 011    122556889999987664  34457899999999999986333  22 2245555


Q ss_pred             HHhc
Q 018446          303 RVLG  306 (355)
Q Consensus       303 rAl~  306 (355)
                      ....
T Consensus       162 ~ia~  165 (271)
T 1ujp_A          162 TVVR  165 (271)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            5433

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=87.09  E-value=1.1  Score=42.07  Aligned_cols=39  Identities=21%  Similarity=0.097  Sum_probs=34.1

Q ss_pred             HHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHH
Q 018446          227 FENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLL  267 (355)
Q Consensus       227 ~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLL  267 (355)
                      .+.++.+|+. +++||+. +|.|+ +-|+.++...|||+|+.
T Consensus       195 ~~~v~~vr~~-~~~pv~v-GfGI~~~e~~~~~~~~gADgvVV  234 (267)
T 3vnd_A          195 ENILTQLAEF-NAPPPLL-GFGIAEPEQVRAAIKAGAAGAIS  234 (267)
T ss_dssp             HHHHHHHHTT-TCCCEEE-CSSCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHh-cCCCEEE-ECCcCCHHHHHHHHHcCCCEEEE
Confidence            4778899986 7999887 99995 99999899999999976

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=87.01  E-value=0.59  Score=44.85  Aligned_cols=72  Identities=31%  Similarity=0.290  Sum_probs=54.5

Q ss_pred             HHHHHHHcCceEEEEe-ccC----CCC----------CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH
Q 018446          202 IARSYEKGGAACLSIL-TDE----KYF----------KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL  266 (355)
Q Consensus       202 iA~~Ye~~GAaaISVL-TD~----~fF----------~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL  266 (355)
                      .|+..++.||++|.|- .+.    ..|          .|.++.+..+++. +++||+.-==|-++-.+.++..+|||+|.
T Consensus       157 ~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~-~~iPViaaGGI~~~~~~~~~l~~GAd~V~  235 (369)
T 3bw2_A          157 EARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA-VDIPVVAAGGIMRGGQIAAVLAAGADAAQ  235 (369)
T ss_dssp             HHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH-CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh-cCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence            4677778899999882 110    011          2347888899886 79999876666699999999999999999


Q ss_pred             HHHhcCCH
Q 018446          267 LIAAVLPD  274 (355)
Q Consensus       267 LIaaiL~~  274 (355)
                      +.-+++..
T Consensus       236 vGs~~~~~  243 (369)
T 3bw2_A          236 LGTAFLAT  243 (369)
T ss_dssp             ESHHHHTS
T ss_pred             EChHHhCC
Confidence            88777644

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=86.92  E-value=0.23  Score=50.06  Aligned_cols=74  Identities=19%  Similarity=0.184  Sum_probs=52.2

Q ss_pred             HHHHHHHHHcCceEEEEeccC-C--------CC-CCCHHHHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHH
Q 018446          200 VEIARSYEKGGAACLSILTDE-K--------YF-KGSFENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLL  267 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~-~--------fF-~GS~edL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL  267 (355)
                      .+.|+...++||++|.|-..+ .        .+ ...++-+..++++  ..++||+.-==|-++-+|.+|..+|||+|.+
T Consensus       281 ~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v  360 (490)
T 4avf_A          281 AEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM  360 (490)
T ss_dssp             HHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence            367888999999999982111 0        11 1234555555542  2479998766666999999999999999998


Q ss_pred             HHhcCC
Q 018446          268 IAAVLP  273 (355)
Q Consensus       268 IaaiL~  273 (355)
                      =-+++.
T Consensus       361 Gs~~~~  366 (490)
T 4avf_A          361 GSMFAG  366 (490)
T ss_dssp             CTTTTT
T ss_pred             cHHHhc
Confidence            766654

>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*

Probab=86.91  E-value=10  Score=34.20  Aligned_cols=137  Identities=10%  Similarity=0.065  Sum_probs=85.8

Q ss_pred             ccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCC
Q 018446          161 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC  240 (355)
Q Consensus       161 rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~l  240 (355)
                      ..|.+.|....  .+...+..|+|..+.  +. ...--...+++...+.|..-=.+     +..-+.+.|..+|+....+
T Consensus        86 ptL~evl~~~~--~~~~~l~iEiK~~~~--~~-~~~~~~~~v~~~l~~~~~~~~v~-----~~SF~~~~l~~~~~~~p~~  155 (250)
T 3ks6_A           86 MTLEELCALYV--DSHVNFRCEIKPGVD--GL-PYEGFVALVIAGLERHSMLERTT-----FSSFLLASMDELWKATTRP  155 (250)
T ss_dssp             EEHHHHHHHHT--TCSCEEEEEECCCTT--SC-CCTTHHHHHHHHHHHTTCGGGEE-----EEESCHHHHHHHHHHCCSC
T ss_pred             cCHHHHHHHHh--ccCcEEEEEeCCCcc--cC-cchHHHHHHHHHHHhcCCCCCEE-----EEeCCHHHHHHHHHHCCCC
Confidence            35666665432  134689999996431  11 11111345666666666421011     1123678888898765566


Q ss_pred             CeeccccccCHH--------H-HHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCC
Q 018446          241 PLLCKEFIVDAW--------Q-IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGI  310 (355)
Q Consensus       241 PVLrKDFIIdpy--------Q-I~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga  310 (355)
                      |+-   + +..+        + +..++..|++++-.-...+++    ++++.|+..|+.+.+ -|.+++++++.+++ |+
T Consensus       156 ~~~---l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~G~~V~~WTvn~~~~~~~l~~~-GV  226 (250)
T 3ks6_A          156 RLW---L-VSPSVLQQLGPGAVIETAIAHSIHEIGVHIDTADA----GLMAQVQAAGLDFGCWAAHTPSQITKALDL-GV  226 (250)
T ss_dssp             EEE---E-ECHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCH----HHHHHHHHTTCEEEEECCCSHHHHHHHHHH-TC
T ss_pred             cEE---E-EecccccccchhHHHHHHHhcCCCEEecchhhCCH----HHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CC
Confidence            642   1 2221        1 234578899987766666764    688999999999877 57889999999997 88


Q ss_pred             eEEEee
Q 018446          311 ELIGIN  316 (355)
Q Consensus       311 ~iIGIN  316 (355)
                      +-|--|
T Consensus       227 DgIiTD  232 (250)
T 3ks6_A          227 KVFTTD  232 (250)
T ss_dssp             SEEEES
T ss_pred             CEEEcC
Confidence            877655

>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}

Probab=86.73  E-value=2.4  Score=40.72  Aligned_cols=117  Identities=15%  Similarity=0.200  Sum_probs=85.1

Q ss_pred             HHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCe
Q 018446          163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL  242 (355)
Q Consensus       163 F~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPV  242 (355)
                      ...++++...  ....+..+.     . |-+.. -+...+++..++.|..-|    |+.+-.++++.+..+|+. +++||
T Consensus       180 ~v~avR~~~g--~~~~l~vDa-----n-~~~~~-~~A~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~ipI  245 (377)
T 3my9_A          180 ILETMRGEFG--ERIDLRLDF-----N-QALTP-FGAMKILRDVDAFRPTFI----EQPVPRRHLDAMAGFAAA-LDTPI  245 (377)
T ss_dssp             HHHHHHHHHG--GGSEEEEEC-----T-TCCCT-TTHHHHHHHHHTTCCSCE----ECCSCTTCHHHHHHHHHH-CSSCE
T ss_pred             HHHHHHHHhC--CCCeEEEeC-----C-CCcCH-HHHHHHHHHHhhcCCCEE----ECCCCccCHHHHHHHHHh-CCCCE
Confidence            3455665431  124577764     2 22332 356788999998886554    455667899999999986 89999


Q ss_pred             eccccccCHHHHHHHHHcC-CcchHH-HHhcCCHHHHHHHHHHHHHcCCcEEE
Q 018446          243 LCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDLDIRYMTKICKLLGLTALV  293 (355)
Q Consensus       243 LrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~~L~~L~~~A~~LGLeaLV  293 (355)
                      ..-+-+.+++|+.+....| +|.|.+ +..+=+-.+...+..+|+..|+.+.+
T Consensus       246 a~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~  298 (377)
T 3my9_A          246 LADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYG  298 (377)
T ss_dssp             EESTTCSSHHHHHHHHHHTCCSEEECCHHHHTSHHHHHHHHHHHHHHTCCEEC
T ss_pred             EECCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEec
Confidence            9999999999999888766 788777 33333456778889999999999864

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=86.59  E-value=0.21  Score=50.51  Aligned_cols=74  Identities=15%  Similarity=0.099  Sum_probs=50.4

Q ss_pred             HHHHHHHHHcCceEEEEeccCCC---------C-CCCHHHHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHH
Q 018446          200 VEIARSYEKGGAACLSILTDEKY---------F-KGSFENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLL  267 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~f---------F-~GS~edL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL  267 (355)
                      .+.|+...++||++|.|-.-+..         + ...++-+..+.++  ..++||+.-==|-++-+|.+|.++|||+|.+
T Consensus       283 ~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i  362 (496)
T 4fxs_A          283 AEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV  362 (496)
T ss_dssp             HHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence            36788899999999997421111         1 1233444555432  1379999855566899999999999999987


Q ss_pred             HHhcCC
Q 018446          268 IAAVLP  273 (355)
Q Consensus       268 IaaiL~  273 (355)
                      =-+++.
T Consensus       363 Gs~f~~  368 (496)
T 4fxs_A          363 GSMFAG  368 (496)
T ss_dssp             STTTTT
T ss_pred             cHHHhc
Confidence            655554

>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}

Probab=86.57  E-value=2.7  Score=37.38  Aligned_cols=64  Identities=19%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             HHHHHHHHcCCcchHHHH------hcC-----------CH-------HHHHHHHHHHHHcCCcEEEEeC------CHHHH
Q 018446          252 WQIYYARTKGADAVLLIA------AVL-----------PD-------LDIRYMTKICKLLGLTALVEVH------DEREM  301 (355)
Q Consensus       252 yQI~eAr~~GADAVLLIa------aiL-----------~~-------~~L~~L~~~A~~LGLeaLVEVH------~~eEL  301 (355)
                      -.|..|..+||+.|.+..      ...           .+       +.|.++.++|.+.|+...+|-|      +.+++
T Consensus        94 ~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~  173 (301)
T 3cny_A           94 KHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLKVAYHHHMGTGIQTKEET  173 (301)
T ss_dssp             HHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSSSCSHHHH
T ss_pred             HHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCcccCCHHHH
Confidence            356678889999877653      111           11       3567888999999999999987      67888


Q ss_pred             HHHhccCCCeEEEe
Q 018446          302 DRVLGIEGIELIGI  315 (355)
Q Consensus       302 erAl~l~ga~iIGI  315 (355)
                      .+.++.-+.+-+|+
T Consensus       174 ~~l~~~~~~~~vg~  187 (301)
T 3cny_A          174 DRLMANTDPKLVGL  187 (301)
T ss_dssp             HHHHHTSCTTTCEE
T ss_pred             HHHHHhCCccceeE
Confidence            88776423333444

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=86.38  E-value=3.8  Score=38.66  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=72.5

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHH----HHHHHhcCCCCCeeccccccC---HHHHHHHHHcCCcchHHHHh
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFEN----LEAVRSAGVKCPLLCKEFIVD---AWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~ed----L~~VR~a~v~lPVLrKDFIId---pyQI~eAr~~GADAVLLIaa  270 (355)
                      ++ +++.+..++|+-.  ++.-. +  -+.+.    +..+|+. ++.|+-..=|+.+   ..++..+...|+|+|.+-..
T Consensus        25 ~~-~la~av~~aG~lG--~i~~~-~--~~~~~~~~~i~~i~~~-~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~~g   97 (332)
T 2z6i_A           25 DG-DLAGAVSKAGGLG--IIGGG-N--APKEVVKANIDKIKSL-TDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAG   97 (332)
T ss_dssp             CH-HHHHHHHHHTSBE--EEECT-T--CCHHHHHHHHHHHHHH-CCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEECSS
T ss_pred             cH-HHHHHHHhCCCcE--EeCCC-C--CCHHHHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEECCC
Confidence            44 4666777777622  22111 1  24444    4456654 5567644333323   35678889999999987665


Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCC
Q 018446          271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRN  319 (355)
Q Consensus       271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRd  319 (355)
                       .+.    ++++..++.|+..++-|++.+++.++.+. |++.|.+.++.
T Consensus        98 -~p~----~~i~~l~~~g~~v~~~v~~~~~a~~~~~~-GaD~i~v~g~~  140 (332)
T 2z6i_A           98 -NPS----KYMERFHEAGIIVIPVVPSVALAKRMEKI-GADAVIAEGME  140 (332)
T ss_dssp             -CGG----GTHHHHHHTTCEEEEEESSHHHHHHHHHT-TCSCEEEECTT
T ss_pred             -ChH----HHHHHHHHcCCeEEEEeCCHHHHHHHHHc-CCCEEEEECCC
Confidence             332    34566667899999999999999999986 99999998764

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=86.33  E-value=3.3  Score=36.31  Aligned_cols=134  Identities=22%  Similarity=0.217  Sum_probs=83.4

Q ss_pred             cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCC
Q 018446          162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP  241 (355)
Q Consensus       162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lP  241 (355)
                      ++.+.|++..   + ..+++++|..     +|-.  +|..+++.+.++||++++|..+.     ..+.|+.+++.+ .++
T Consensus        41 ~~i~~lr~~~---~-~~v~~D~kl~-----DI~~--t~~~~v~~~~~~Gad~vtvh~~~-----g~~~i~~~~~~~-gv~  103 (208)
T 2czd_A           41 DIIRRLKEET---G-VEIIADLKLA-----DIPN--TNRLIARKVFGAGADYVIVHTFV-----GRDSVMAVKELG-EII  103 (208)
T ss_dssp             THHHHHHHHH---C-CEEEEEEEEC-----SCHH--HHHHHHHHHHHTTCSEEEEESTT-----CHHHHHHHHTTS-EEE
T ss_pred             HHHHHHHHcC---C-CEEEEEeeeC-----chHH--HHHHHHHHHHhcCCCEEEEeccC-----CHHHHHHHHHhC-CcE
Confidence            4777787642   2 3699999997     2221  47788899999999999998763     356688888753 444


Q ss_pred             eecc-------ccccCH--HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHH--HHHHHhcc
Q 018446          242 LLCK-------EFIVDA--WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DER--EMDRVLGI  307 (355)
Q Consensus       242 VLrK-------DFIIdp--yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~e--ELerAl~l  307 (355)
                      ++..       +++.+-  +-...+...|+|++..+...+  ++++.+.+.   +|...++ |-   +.+  ....++++
T Consensus       104 vl~~t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~~~--~~i~~lr~~---~~~~~~i-v~gGI~~~g~~~~~~~~a  177 (208)
T 2czd_A          104 MVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRP--ERIGYIRDR---LKEGIKI-LAPGIGAQGGKAKDAVKA  177 (208)
T ss_dssp             EECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSST--HHHHHHHHH---SCTTCEE-EECCCCSSTTHHHHHHHH
T ss_pred             EEEecCCcchhhHHHHHHHHHHHHHHHhCCcEEEECCCCh--HHHHHHHHh---CCCCeEE-EECCCCCCCCCHHHHHHc
Confidence            4433       111111  123467788999986665543  344444433   3654433 32   233  67777876


Q ss_pred             CCCeEEEeeCCCC
Q 018446          308 EGIELIGINNRNL  320 (355)
Q Consensus       308 ~ga~iIGINNRdL  320 (355)
                       |++++-+ +|.+
T Consensus       178 -Gad~vvv-Gr~I  188 (208)
T 2czd_A          178 -GADYIIV-GRAI  188 (208)
T ss_dssp             -TCSEEEE-CHHH
T ss_pred             -CCCEEEE-ChHH
Confidence             8887765 5655

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}

Probab=86.28  E-value=2.1  Score=41.34  Aligned_cols=115  Identities=12%  Similarity=0.137  Sum_probs=84.0

Q ss_pred             HHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCH---HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCC
Q 018446          163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDP---VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK  239 (355)
Q Consensus       163 F~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp---~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~  239 (355)
                      ...++++...  ....+..+.          +..+++   ..+++.+++.|...|    |+.+-..+++.+..+|+. ++
T Consensus       183 ~v~avR~a~g--~~~~l~vDa----------n~~~~~~~A~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~  245 (383)
T 3i4k_A          183 RVAELAREVG--DRVSLRIDI----------NARWDRRTALHYLPILAEAGVELF----EQPTPADDLETLREITRR-TN  245 (383)
T ss_dssp             HHHHHHHTTT--TTSEEEEEC----------TTCSCHHHHHHHHHHHHHTTCCEE----ESCSCTTCHHHHHHHHHH-HC
T ss_pred             HHHHHHHHcC--CCCEEEEEC----------CCCCCHHHHHHHHHHHHhcCCCEE----ECCCChhhHHHHHHHHhh-CC
Confidence            3455655421  234577764          223344   457888888886554    444667789999999986 79


Q ss_pred             CCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHHHHHHHHHHHHcCCcEEEE
Q 018446          240 CPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLDIRYMTKICKLLGLTALVE  294 (355)
Q Consensus       240 lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~L~~L~~~A~~LGLeaLVE  294 (355)
                      +||..-+-+.+++++.+....| +|.|.+=+.-+ +-.+...+.++|+..|+.+.+-
T Consensus       246 iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~  302 (383)
T 3i4k_A          246 VSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHGA  302 (383)
T ss_dssp             CEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred             CCEEecCccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEeC
Confidence            9999999999999999988877 78887755555 4567888999999999987653

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=86.14  E-value=2.7  Score=39.90  Aligned_cols=132  Identities=16%  Similarity=0.219  Sum_probs=80.9

Q ss_pred             HHHHHHHHHcCceEEEEec----------------cCCCCCCCH--------HHHHHHHhcCCCCCeecc----cc---c
Q 018446          200 VEIARSYEKGGAACLSILT----------------DEKYFKGSF--------ENLEAVRSAGVKCPLLCK----EF---I  248 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLT----------------D~~fF~GS~--------edL~~VR~a~v~lPVLrK----DF---I  248 (355)
                      .+-|+...++|+++|=+..                ...-|+||+        |-+.+||++ ++.||..|    ||   .
T Consensus       147 ~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~-v~~pv~vris~~~~~~~g  225 (338)
T 1z41_A          147 KQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQV-WDGPLFVRVSASDYTDKG  225 (338)
T ss_dssp             HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHH-CCSCEEEEEECCCCSTTS
T ss_pred             HHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHH-cCCcEEEEecCcccCCCC
Confidence            4445666788999997653                223478986        556778886 69999877    22   1


Q ss_pred             cC---HHHHH-HHHHcCCcchHHHHhcC-------CH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEE
Q 018446          249 VD---AWQIY-YARTKGADAVLLIAAVL-------PD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIG  314 (355)
Q Consensus       249 Id---pyQI~-eAr~~GADAVLLIaaiL-------~~-~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIG  314 (355)
                      .+   ..++. ....+|+|.|-+.....       .+ ..+..+..+.+.+++-.++  -++|.+++++++...++++|+
T Consensus       226 ~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~  305 (338)
T 1z41_A          226 LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIF  305 (338)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEe
Confidence            22   22333 33468999987754311       11 1344444555566765444  468999999999862399999


Q ss_pred             eeCCCCCccccChhhHHhhhcc
Q 018446          315 INNRNLETFEVDNSNTKKLLEG  336 (355)
Q Consensus       315 INNRdL~TfevDl~~t~~L~~~  336 (355)
                      +---    |--|++-..++...
T Consensus       306 iGR~----~i~nPdl~~ki~~~  323 (338)
T 1z41_A          306 IGRE----LLRDPFFARTAAKQ  323 (338)
T ss_dssp             ECHH----HHHCTTHHHHHHHH
T ss_pred             ecHH----HHhCchHHHHHHcC
Confidence            8532    22345555666544

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=86.01  E-value=0.78  Score=43.21  Aligned_cols=39  Identities=23%  Similarity=0.201  Sum_probs=34.0

Q ss_pred             HHHHHHHHhcCCCCCeecccccc-CHHHHHHHHHcCCcchHH
Q 018446          227 FENLEAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLL  267 (355)
Q Consensus       227 ~edL~~VR~a~v~lPVLrKDFII-dpyQI~eAr~~GADAVLL  267 (355)
                      .+.+..+|+. +++||+. .|.| ++-|+.++...|||+|+.
T Consensus       197 ~~~v~~vr~~-~~~Pv~v-GfGIst~e~~~~~~~~gADgvIV  236 (271)
T 3nav_A          197 HALLERLQQF-DAPPALL-GFGISEPAQVKQAIEAGAAGAIS  236 (271)
T ss_dssp             HHHHHHHHHT-TCCCEEE-CSSCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHh-cCCCEEE-ECCCCCHHHHHHHHHcCCCEEEE
Confidence            4678899986 7999987 9999 599999899999999976

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*

Probab=85.99  E-value=2.1  Score=41.45  Aligned_cols=93  Identities=11%  Similarity=0.013  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHH-hcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR-SAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDL  275 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR-~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~  275 (355)
                      ..++++.+++.|...|    |+.+-..+++.+..+| +. +++||..-+-+.++++..+....| +|.|.+=..-+ +-.
T Consensus       211 A~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~~-~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit  285 (389)
T 3ozy_A          211 ALAMLRILDEAGCYWF----EEPLSIDDIEGHRILRAQG-TPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGGIT  285 (389)
T ss_dssp             HHHHHHHHHHTTCSEE----ESCSCTTCHHHHHHHHTTC-CSSEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTSSCHH
T ss_pred             HHHHHHHHHhcCCCEE----ECCCCcccHHHHHHHHhcC-CCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence            3467788888887766    4556677999999999 85 899999999999999999888766 78887755555 466


Q ss_pred             HHHHHHHHHHHcCCcEEEEeCCH
Q 018446          276 DIRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       276 ~L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      +...+..+|+..|+.+.  +|+.
T Consensus       286 ~~~~ia~~A~~~gi~~~--~h~~  306 (389)
T 3ozy_A          286 EALAISASAASAHLAWN--PHTF  306 (389)
T ss_dssp             HHHHHHHHHHHTTCEEC--CCCT
T ss_pred             HHHHHHHHHHHcCCEEE--ecCC
Confidence            78889999999999876  5654

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*

Probab=85.98  E-value=1.6  Score=42.15  Aligned_cols=102  Identities=12%  Similarity=0.049  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-----CcchHHHHhcC-
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-----ADAVLLIAAVL-  272 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-----ADAVLLIaaiL-  272 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++.++.+....|     +|.|.+=..-. 
T Consensus       226 a~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~~~~G  300 (392)
T 1tzz_A          226 GIAYAKMLRDYPLFWY----EEVGDPLDYALQAALAEF-YPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSY  300 (392)
T ss_dssp             HHHHHHHHTTSCCSEE----ECCSCTTCHHHHHHHTTT-CCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTTT
T ss_pred             HHHHHHHHHHcCCCee----cCCCChhhHHHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECccccC
Confidence            3466777777776643    455667899999999985 899999999999999999999888     89888834433 


Q ss_pred             CHHHHHHHHHHHHHcCCc---EEEEeC--CHHHHHHHhcc
Q 018446          273 PDLDIRYMTKICKLLGLT---ALVEVH--DEREMDRVLGI  307 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLe---aLVEVH--~~eELerAl~l  307 (355)
                      +-.+...+.++|+..|+.   +.  +|  ...++.-+..+
T Consensus       301 Git~~~~i~~~A~~~gi~~~~~~--~~~~~~~~~hl~aa~  338 (392)
T 1tzz_A          301 GLCEYQRTLEVLKTHGWSPSRCI--PHGGHQMSLNIAAGL  338 (392)
T ss_dssp             CHHHHHHHHHHHHHTTCCGGGBC--CSCCBHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCCceEe--ecHHHHHHHHHHHhC
Confidence            556778899999999998   55  45  67776666544

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A

Probab=85.93  E-value=2.7  Score=36.70  Aligned_cols=106  Identities=9%  Similarity=0.060  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC----
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL----  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL----  272 (355)
                      .++.++.+...+.|-...|+-+...+..++.+.-....+.             -...|..|..+||+.|.+....-    
T Consensus        46 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~a~~lG~~~v~~~~g~~~~~~  112 (278)
T 1i60_A           46 HSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITE-------------FKGMMETCKTLGVKYVVAVPLVTEQKI  112 (278)
T ss_dssp             SCHHHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHH-------------HHHHHHHHHHHTCCEEEEECCBCSSCC
T ss_pred             CCHHHHHHHHHHcCCCeeeeccccccccCCHHHHHHHHHH-------------HHHHHHHHHHcCCCEEEEecCCCCCCC
Confidence            3556666666666665555444332222332221111110             12356678888998877643321    


Q ss_pred             C--------HHHHHHHHHHHHHcCCcEEEEeCC--------HHHHHHHhccCCCeEEEe
Q 018446          273 P--------DLDIRYMTKICKLLGLTALVEVHD--------EREMDRVLGIEGIELIGI  315 (355)
Q Consensus       273 ~--------~~~L~~L~~~A~~LGLeaLVEVH~--------~eELerAl~l~ga~iIGI  315 (355)
                      +        -+.|..+.++|.+.|+...+|-|.        .+++.+.++.-+.+-+|+
T Consensus       113 ~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~l~~~~~~~~~g~  171 (278)
T 1i60_A          113 VKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVNTVNRDNVGL  171 (278)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSSCSHHHHHHHHHHHCCTTEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecCCccchhcCHHHHHHHHHHhCCCCeeE
Confidence            2        135677888899999999999884        567777665323333554

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=85.85  E-value=1.1  Score=43.62  Aligned_cols=63  Identities=11%  Similarity=0.092  Sum_probs=49.1

Q ss_pred             HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHc--CCcEEE-EeCCHHHHHHHhccCCCeEEEe
Q 018446          252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALV-EVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       252 yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~L--GLeaLV-EVH~~eELerAl~l~ga~iIGI  315 (355)
                      -++..+...|+|+|.+..+.-.+..+.++++.+++.  |+..++ .+++.++++++.++ |++.|.|
T Consensus       156 ~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~-Gad~I~v  221 (404)
T 1eep_A          156 ERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISV-GADCLKV  221 (404)
T ss_dssp             HHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTT-TCSEEEE
T ss_pred             HHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhc-CCCEEEE
Confidence            455566778999988754444445667777777776  898887 89999999999996 9999999

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=85.84  E-value=3.1  Score=39.89  Aligned_cols=128  Identities=17%  Similarity=0.241  Sum_probs=78.1

Q ss_pred             HHHHHHcCceEEEEecc----------------CCCCCCCHHH--------HHHHHhcCCCCCeecc----cc------c
Q 018446          203 ARSYEKGGAACLSILTD----------------EKYFKGSFEN--------LEAVRSAGVKCPLLCK----EF------I  248 (355)
Q Consensus       203 A~~Ye~~GAaaISVLTD----------------~~fF~GS~ed--------L~~VR~a~v~lPVLrK----DF------I  248 (355)
                      |+.-.++|+++|=+..-                ..-|+||+++        +++||++ ++.||..|    ||      .
T Consensus       150 A~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~-v~~pv~vRls~~~~~~~g~~~  228 (340)
T 3gr7_A          150 ARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREV-WDGPLFVRISASDYHPDGLTA  228 (340)
T ss_dssp             HHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHH-CCSCEEEEEESCCCSTTSCCG
T ss_pred             HHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHh-cCCceEEEeccccccCCCCCH
Confidence            44445679999887622                2358999764        5577876 68898654    22      1


Q ss_pred             cCHHHHHH-HHHcCCcchHHHHhcCC-------H-HHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCC-CeEEEee
Q 018446          249 VDAWQIYY-ARTKGADAVLLIAAVLP-------D-LDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEG-IELIGIN  316 (355)
Q Consensus       249 IdpyQI~e-Ar~~GADAVLLIaaiL~-------~-~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~g-a~iIGIN  316 (355)
                      -+..++.+ ...+|+|.|-+...-..       + -.+....++.+.+++-.++-  ++|.+++++++.. | +++|++-
T Consensus       229 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~-G~aD~V~iG  307 (340)
T 3gr7_A          229 KDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQN-GRADLVFLG  307 (340)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHT-TSCSEEEEC
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHC-CCeeEEEec
Confidence            22333333 34579998877643221       1 13344445555677766553  6799999999986 6 9999986


Q ss_pred             CCCCCccccChhhHHhhhcc
Q 018446          317 NRNLETFEVDNSNTKKLLEG  336 (355)
Q Consensus       317 NRdL~TfevDl~~t~~L~~~  336 (355)
                      ---|    .|++-..++...
T Consensus       308 R~~l----anPdl~~ki~~~  323 (340)
T 3gr7_A          308 RELL----RNPYWPYAAARE  323 (340)
T ss_dssp             HHHH----HCTTHHHHHHHH
T ss_pred             HHHH----hCchHHHHHHHH
Confidence            3322    345555555443

>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}

Probab=85.77  E-value=1.5  Score=42.20  Aligned_cols=93  Identities=6%  Similarity=0.028  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ..++++..++.|...|    |..+-..+++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+=+.-. +-.+
T Consensus       215 a~~~~~~l~~~~i~~i----E~P~~~~~~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~  289 (392)
T 2poz_A          215 TIRFCRKIGELDICFV----EEPCDPFDNGALKVISEQ-IPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAGGLME  289 (392)
T ss_dssp             HHHHHHHHGGGCEEEE----ECCSCTTCHHHHHHHHHH-CSSCEEECTTCCHHHHHHHHHTTTCCSEECCCTTTSSCHHH
T ss_pred             HHHHHHHHHhcCCCEE----ECCCCcccHHHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence            3466777777775433    444556789999999986 899999999999999999988877 78877734333 5567


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCH
Q 018446          277 IRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ...+.++|+..|+.+.+  |+.
T Consensus       290 ~~~i~~~A~~~g~~~~~--h~~  309 (392)
T 2poz_A          290 TKKICAMAEAYNMRVAP--HVC  309 (392)
T ss_dssp             HHHHHHHHHTTTCEECC--CCC
T ss_pred             HHHHHHHHHHcCCeEec--CCC
Confidence            78899999999998776  653

>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*

Probab=85.72  E-value=2  Score=41.87  Aligned_cols=93  Identities=11%  Similarity=0.064  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC-HHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP-DLDI  277 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~-~~~L  277 (355)
                      ...+++..++.|..-|    |+.+-.++++.+..+|+. +++||..-+-+.++++..+....|+|.|.+=+.-.+ -.+.
T Consensus       207 A~~~~~~L~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~d~v~~k~~~~GGit~~  281 (393)
T 4dwd_A          207 AIRVGRALEDLGYSWF----EEPVQHYHVGAMGEVAQR-LDITVSAGEQTYTLQALKDLILSGVRMVQPDIVKMGGITGM  281 (393)
T ss_dssp             HHHHHHHHHHTTCSEE----ECCSCTTCHHHHHHHHHH-CSSEEEBCTTCCSHHHHHHHHHHTCCEECCCTTTTTHHHHH
T ss_pred             HHHHHHHHHhhCCCEE----ECCCCcccHHHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCEEEeCccccCCHHHH
Confidence            3467788888886655    455667899999999986 899999999999999999998888999888555553 4567


Q ss_pred             HHHHHHHHHcCCcEEEEeCCH
Q 018446          278 RYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ..+.++|+..|+.+.  +|+.
T Consensus       282 ~~ia~~A~~~gi~~~--~h~~  300 (393)
T 4dwd_A          282 MQCAALAHAHGVEFV--PHQT  300 (393)
T ss_dssp             HHHHHHHHHHTCEEC--CCCC
T ss_pred             HHHHHHHHHcCCEEe--ecCC
Confidence            789999999999865  7776

>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A

Probab=85.69  E-value=1.7  Score=41.48  Aligned_cols=118  Identities=13%  Similarity=0.094  Sum_probs=84.5

Q ss_pred             cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCC
Q 018446          162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP  241 (355)
Q Consensus       162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lP  241 (355)
                      ....++++..   ....+..+.     . |-+... + .++++..++.|..-|    |+.+-..+++.+..+|+. +++|
T Consensus       178 ~~v~avr~a~---~~~~l~vDa-----n-~~~~~~-~-~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~ip  241 (375)
T 1r0m_A          178 QPVRATREAF---PDIRLTVDA-----N-SAYTLA-D-AGRLRQLDEYDLTYI----EQPLAWDDLVDHAELARR-IRTP  241 (375)
T ss_dssp             HHHHHHHHHC---TTSCEEEEC-----T-TCCCGG-G-HHHHHTTGGGCCSCE----ECCSCTTCSHHHHHHHHH-CSSC
T ss_pred             HHHHHHHHHc---CCCeEEEeC-----C-CCCCHH-H-HHHHHHHHhCCCcEE----ECCCCcccHHHHHHHHHh-CCCC
Confidence            3455666542   224566664     1 223333 4 677888888776544    444566789999999986 8999


Q ss_pred             eeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHHHHHHHHHHHHcCCcEEEEe
Q 018446          242 LLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLDIRYMTKICKLLGLTALVEV  295 (355)
Q Consensus       242 VLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~L~~L~~~A~~LGLeaLVEV  295 (355)
                      |..-+-+.++.++.+....| +|.|.+=+.-. +-.+...+.++|+..|+.+++--
T Consensus       242 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~  297 (375)
T 1r0m_A          242 LCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGG  297 (375)
T ss_dssp             EEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECC
T ss_pred             EEecCccCCHHHHHHHHHhCCCCEEEECcchhcCHHHHHHHHHHHHHcCCcEEecC
Confidence            99999999999999988777 78877744444 45677889999999999986643

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=85.69  E-value=0.85  Score=43.17  Aligned_cols=74  Identities=16%  Similarity=0.075  Sum_probs=54.7

Q ss_pred             CCHHHHHHHHHHcCceEEEEe----c--------cC------CC--CC--CCHHHHHHHHhcCC-CCCeeccccccCHHH
Q 018446          197 FDPVEIARSYEKGGAACLSIL----T--------DE------KY--FK--GSFENLEAVRSAGV-KCPLLCKEFIVDAWQ  253 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVL----T--------D~------~f--F~--GS~edL~~VR~a~v-~lPVLrKDFIIdpyQ  253 (355)
                      .++. .|+..+++||++|.|=    |        -.      .|  ..  ..++.|..++++ + ++||+.-==|-++.+
T Consensus       193 ~~~e-~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~-~~~ipvia~GGI~~~~d  270 (332)
T 1vcf_A          193 LSRE-AALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREV-LPHLPLVASGGVYTGTD  270 (332)
T ss_dssp             CCHH-HHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHH-CSSSCEEEESSCCSHHH
T ss_pred             CCHH-HHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHh-cCCCeEEEECCCCCHHH
Confidence            4454 5788889999999882    1        11      11  11  245667888876 6 799999999999999


Q ss_pred             HHHHHHcCCcchHHHHhcC
Q 018446          254 IYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       254 I~eAr~~GADAVLLIaaiL  272 (355)
                      +.++..+|||+|.+=-.+|
T Consensus       271 ~~kal~~GAd~V~igr~~l  289 (332)
T 1vcf_A          271 GAKALALGADLLAVARPLL  289 (332)
T ss_dssp             HHHHHHHTCSEEEECGGGH
T ss_pred             HHHHHHhCCChHhhhHHHH
Confidence            9999999999997644443

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*

Probab=85.51  E-value=2.7  Score=40.05  Aligned_cols=117  Identities=15%  Similarity=0.169  Sum_probs=82.4

Q ss_pred             HHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHH---HHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCC
Q 018446          163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPV---EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK  239 (355)
Q Consensus       163 F~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~---~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~  239 (355)
                      ...++++...  ....+..+.          +..+++.   ++++.+++.|..-   + |+.+-.++++.+..+|+. ++
T Consensus       172 ~v~avR~a~g--~~~~l~vDa----------n~~~~~~~a~~~~~~L~~~~i~~---i-EqP~~~~d~~~~~~l~~~-~~  234 (354)
T 3jva_A          172 RVKAIREAVG--FDIKLRLDA----------NQAWTPKDAVKAIQALADYQIEL---V-EQPVKRRDLEGLKYVTSQ-VN  234 (354)
T ss_dssp             HHHHHHHHHC--TTSEEEEEC----------TTCSCHHHHHHHHHHTTTSCEEE---E-ECCSCTTCHHHHHHHHHH-CS
T ss_pred             HHHHHHHHcC--CCCeEEEEC----------CCCCCHHHHHHHHHHHHhcCCCE---E-ECCCChhhHHHHHHHHHh-CC
Confidence            3445555431  234566664          2234544   5667777666443   3 445667899999999986 89


Q ss_pred             CCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHHHHHHHHHHHHcCCcEEEEeC
Q 018446          240 CPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLDIRYMTKICKLLGLTALVEVH  296 (355)
Q Consensus       240 lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~L~~L~~~A~~LGLeaLVEVH  296 (355)
                      +||..-+-+.+++++.+....| +|.|.+=..-. +-.+...+.++|+..|+.+.+-..
T Consensus       235 iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~  293 (354)
T 3jva_A          235 TTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCM  293 (354)
T ss_dssp             SEEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCC
T ss_pred             CCEEEcCCcCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCeEEecCC
Confidence            9999999999999998887765 68887744443 556778899999999999886443

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=85.50  E-value=1.2  Score=42.80  Aligned_cols=68  Identities=22%  Similarity=0.252  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHcCC--------cchHH----HHhcCCHHHHHHHHHHHHHc--CCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          250 DAWQIYYARTKGA--------DAVLL----IAAVLPDLDIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       250 dpyQI~eAr~~GA--------DAVLL----IaaiL~~~~L~~L~~~A~~L--GLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      -..|-|-.+.-|+        |+||+    |++.=+   +..-++.+++.  +....|||+|.+|++.|+.+ |+++|..
T Consensus       160 r~l~kyAv~~GGg~nHR~gL~d~vlikdNHi~~~G~---i~~Av~~~r~~~p~~~ieVEvdtlde~~eAl~a-GaD~I~L  235 (298)
T 3gnn_A          160 RLAQKYAVRVGGGANQRLALYAGILIKENHIAAAGG---VGEALDAAFALNAEVPVQIEVETLDQLRTALAH-GARSVLL  235 (298)
T ss_dssp             HHHHHHHHHHTTCCCC-------------------C---HHHHHHHHHHHC--CCCEEEESSHHHHHHHHHT-TCEEEEE
T ss_pred             HHHHHhhHHhcCccceecCCCcEEEEeHHHHHHcCC---HHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc-CCCEEEE
Confidence            3466777777776        56666    333322   33334444443  46778999999999999996 9999999


Q ss_pred             eCCCCC
Q 018446          316 NNRNLE  321 (355)
Q Consensus       316 NNRdL~  321 (355)
                      .|-++.
T Consensus       236 Dn~~~~  241 (298)
T 3gnn_A          236 DNFTLD  241 (298)
T ss_dssp             ESCCHH
T ss_pred             CCCCHH
Confidence            996553

>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A

Probab=85.47  E-value=12  Score=33.04  Aligned_cols=130  Identities=18%  Similarity=0.103  Sum_probs=80.6

Q ss_pred             cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCC-CCCCCHHHHHHHHhcCCCC
Q 018446          162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEK-YFKGSFENLEAVRSAGVKC  240 (355)
Q Consensus       162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~-fF~GS~edL~~VR~a~v~l  240 (355)
                      .|.+.|..... .++..+..|+|......    +. -...+++.+.+         .+.- +...+.+.|..+|+...++
T Consensus        81 tL~evl~~~~~-~~~~~l~iEiK~~~~~~----~~-~~~~v~~~l~~---------~~~v~i~Sf~~~~l~~~~~~~p~~  145 (224)
T 1vd6_A           81 RLEEVLALKEA-FPQAVFNVELKSFPGLG----EE-AARRLAALLRG---------REGVWVSSFDPLALLALRKAAPGL  145 (224)
T ss_dssp             BHHHHHGGGGT-CTTCEEEEEECCCTTSH----HH-HHHHHHHHTTT---------CSSEEEEESCHHHHHHHHHHCTTS
T ss_pred             CHHHHHHhhhc-cCCceEEEEECCCCCcc----HH-HHHHHHHHHhc---------CCcEEEEeCCHHHHHHHHHHCCCC
Confidence            45555544320 13467999999543320    00 01234444443         1111 1224678899998754556


Q ss_pred             C--eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEEEee
Q 018446          241 P--LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       241 P--VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iIGIN  316 (355)
                      |  .|..++.     ...++..|+|+|-.-...+++    .+++.+++.|+.+.+= |.+.+++++.++. |++.|--|
T Consensus       146 ~~~~l~~~~~-----~~~~~~~~~~~i~~~~~~~~~----~~v~~~~~~G~~v~~wtvn~~~~~~~l~~~-GvdgI~TD  214 (224)
T 1vd6_A          146 PLGFLMAEDH-----SALLPCLGVEAVHPHHALVTE----EAVAGWRKRGLFVVAWTVNEEGEARRLLAL-GLDGLIGD  214 (224)
T ss_dssp             CEEEEESSCC-----GGGGGGSCCSEEEEBGGGCCH----HHHHHHHHTTCEEEEECCCCHHHHHHHHHT-TCSEEEES
T ss_pred             CEEEEecccc-----HHHHHHcCCcEEecCcccCCH----HHHHHHHHCCCEEEEEeCCCHHHHHHHHhc-CCCEEEcC
Confidence            6  3433322     234567899988776666764    6789999999998875 6899999999997 88877544

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=85.36  E-value=0.8  Score=44.39  Aligned_cols=77  Identities=18%  Similarity=0.064  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHcCceEEEEecc--CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCCHH
Q 018446          199 PVEIARSYEKGGAACLSILTD--EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLPDL  275 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD--~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~~~  275 (355)
                      ..++|+..++.|++.|.|-.-  .....+..+.+..+|++ +++||+.--=| ++.+..++...| ||+|-+-=++|.+-
T Consensus       253 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~-~~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~~P  330 (364)
T 1vyr_A          253 ALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRER-FHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIANP  330 (364)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHH-CCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred             HHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHH-CCCCEEEECCc-CHHHHHHHHHCCCccEEEECHHHHhCh
Confidence            456899999999999998642  11123467888999986 89999887666 999999999998 99998877777654


Q ss_pred             HH
Q 018446          276 DI  277 (355)
Q Consensus       276 ~L  277 (355)
                      ++
T Consensus       331 ~~  332 (364)
T 1vyr_A          331 DL  332 (364)
T ss_dssp             TH
T ss_pred             hH
Confidence            44

>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*

Probab=85.20  E-value=2.5  Score=41.00  Aligned_cols=161  Identities=16%  Similarity=0.133  Sum_probs=101.1

Q ss_pred             CCceEEeEeeecCCC------CCCCCCCCCHHHHHHHHH-HcCceEEEEe---ccCCCCCCCHHHHH----HHHhcCCCC
Q 018446          175 GLPALIAEVKKASPS------RGILREDFDPVEIARSYE-KGGAACLSIL---TDEKYFKGSFENLE----AVRSAGVKC  240 (355)
Q Consensus       175 g~~aVIAEvKRaSPS------kG~I~~~~Dp~~iA~~Ye-~~GAaaISVL---TD~~fF~GS~edL~----~VR~a~v~l  240 (355)
                      ++|.++.||--.+|-      .-.-...-++.++|+.+. +.||+.|-|-   |+|..-.=+.+.+.    .+++. +++
T Consensus        52 n~p~iam~V~D~~pe~~~~v~~~~~~~~~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~-~~v  130 (323)
T 4djd_D           52 NRPVIGMEVQDIVPDWPDVLKDPFTDVINEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQA-VGV  130 (323)
T ss_dssp             SCCEEEEEEESSCCSCCHHHHGGGTTTTTCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHH-CCS
T ss_pred             CCCeEEEEEecCCccchhhHHHHHHHHHHhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhh-CCc
Confidence            567899999999887      211122457999999998 9999999995   66654444555443    44554 788


Q ss_pred             Ceecc---ccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHhccCCCeEEEee
Q 018446          241 PLLCK---EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH-DEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       241 PVLrK---DFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH-~~eELerAl~l~ga~iIGIN  316 (355)
                      ||--.   +---++-=+.+|..+||+...+|-++-.+ .+..+...|.++|.-+++--. |.+.+++....  +.=.||.
T Consensus       131 PlsIDg~~~~T~~~eV~eaAleagag~~~lINsv~~~-~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~--a~~~GI~  207 (323)
T 4djd_D          131 PLVVVGCGDVEKDHEVLEAVAEAAAGENLLLGNAEQE-NYKSLTAACMVHKHNIIARSPLDINICKQLNIL--INEMNLP  207 (323)
T ss_dssp             CEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEEBTT-BCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHH--HHTTTCC
T ss_pred             eEEEECCCCCCCCHHHHHHHHHhcCCCCCeEEECCcc-cHHHHHHHHHHhCCeEEEEccchHHHHHHHHHH--HHHcCCC
Confidence            86311   12223445667777899976666666654 457889999999998888532 44444433321  1122332


Q ss_pred             CCC------CCccccChhhHHhhhccccc
Q 018446          317 NRN------LETFEVDNSNTKKLLEGERG  339 (355)
Q Consensus       317 NRd------L~TfevDl~~t~~L~~~~~~  339 (355)
                      ..|      +-+|..+++.+..++..++.
T Consensus       208 ~e~IIlDPg~g~fgk~~e~~l~~l~~ir~  236 (323)
T 4djd_D          208 LDHIVIDPSIGGLGYGIEYSFSIMERIRL  236 (323)
T ss_dssp             GGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred             HHHEEEeCCCccccCCHHHHHHHHHHHHH
Confidence            221      22466677777777665553

>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}

Probab=85.12  E-value=4.9  Score=36.44  Aligned_cols=63  Identities=21%  Similarity=0.167  Sum_probs=43.9

Q ss_pred             HHHHHHHcCCcchHHHHhcCC----------------------HHHHHHHHHHHHHcCCcEEEEeC------CHHHHHHH
Q 018446          253 QIYYARTKGADAVLLIAAVLP----------------------DLDIRYMTKICKLLGLTALVEVH------DEREMDRV  304 (355)
Q Consensus       253 QI~eAr~~GADAVLLIaaiL~----------------------~~~L~~L~~~A~~LGLeaLVEVH------~~eELerA  304 (355)
                      .|..|..+||..|.+......                      -+.|.++.++|.+.|+...+|-|      +.+++.+.
T Consensus       116 ~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~l  195 (340)
T 2zds_A          116 TARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRA  195 (340)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECCTTSSCCSHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCcccCCHHHHHHH
Confidence            467788999998876533211                      12567788899999999999987      66788777


Q ss_pred             hccCC-CeEEEe
Q 018446          305 LGIEG-IELIGI  315 (355)
Q Consensus       305 l~l~g-a~iIGI  315 (355)
                      ++.-+ .+-+|+
T Consensus       196 l~~v~~~~~vg~  207 (340)
T 2zds_A          196 LEAVGHRPAFGL  207 (340)
T ss_dssp             HHHTTTCTTEEE
T ss_pred             HHhcCCCCCeeE
Confidence            76423 334665

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*

Probab=85.12  E-value=1.6  Score=42.17  Aligned_cols=93  Identities=13%  Similarity=0.075  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ..++++..++.|...   +-| .+-..+++.+..+|+. +++||..-+-+.+++++.+....| +|.|.+=+.-. +-.+
T Consensus       234 ai~~~~~l~~~~i~~---iE~-P~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~  308 (410)
T 2gl5_A          234 AIQFAKAIEKYRIFL---YEE-PIHPLNSDNMQKVSRS-TTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGITE  308 (410)
T ss_dssp             HHHHHHHHGGGCEEE---EEC-SSCSSCHHHHHHHHHH-CSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred             HHHHHHHHHhcCCCe---EEC-CCChhhHHHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence            346677777766543   334 4556789999999986 899999999999999999998887 68877744444 3456


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCH
Q 018446          277 IRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ...+.++|+..|+.+.+  |+.
T Consensus       309 ~~~ia~~A~~~gi~~~~--h~~  328 (410)
T 2gl5_A          309 GKKICDYANIYDTTVQV--HVC  328 (410)
T ss_dssp             HHHHHHHHHTTTCEECC--CCC
T ss_pred             HHHHHHHHHHcCCeEee--cCC
Confidence            77889999999999766  654

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}

Probab=85.11  E-value=3.3  Score=39.93  Aligned_cols=87  Identities=13%  Similarity=0.123  Sum_probs=66.8

Q ss_pred             HHHHHHHHHH--cCceEEEEeccCCCCCCCHHHHHHHHhcCC-CCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCCH
Q 018446          199 PVEIARSYEK--GGAACLSILTDEKYFKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLPD  274 (355)
Q Consensus       199 p~~iA~~Ye~--~GAaaISVLTD~~fF~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~~  274 (355)
                      ..++++..++  .|...   + |+.+-.++++.+..+|+. + ++||..-+-+ ++.++.+....| +|.|.+=   =+-
T Consensus       206 a~~~~~~l~~~g~~i~~---i-EqP~~~~~~~~~~~l~~~-~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik---GGi  276 (389)
T 2oz8_A          206 ALTKLVAIREAGHDLLW---V-EDPILRHDHDGLRTLRHA-VTWTQINSGEYL-DLQGKRLLLEAHAADILNVH---GQV  276 (389)
T ss_dssp             HHHHHHHHHHTTCCCSE---E-ESCBCTTCHHHHHHHHHH-CCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC---SCH
T ss_pred             HHHHHHHHHhcCCCceE---E-eCCCCCcCHHHHHHHHhh-CCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC---cCH
Confidence            3467778888  45433   2 555667899999999986 8 8999999999 999999998888 5766553   333


Q ss_pred             HHHHHHHHHHHHcCCcEEEE
Q 018446          275 LDIRYMTKICKLLGLTALVE  294 (355)
Q Consensus       275 ~~L~~L~~~A~~LGLeaLVE  294 (355)
                      .+...+.++|+..|+.+.+-
T Consensus       277 t~a~~i~~~A~~~gi~~~~~  296 (389)
T 2oz8_A          277 TDVMRIGWLAAELGIPISIG  296 (389)
T ss_dssp             HHHHHHHHHHHHHTCCEEEC
T ss_pred             HHHHHHHHHHHHcCCeEeec
Confidence            45678889999999996665

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=84.86  E-value=2.8  Score=39.53  Aligned_cols=90  Identities=19%  Similarity=0.214  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHcCce--EEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCH
Q 018446          199 PVEIARSYEKGGAA--CLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPD  274 (355)
Q Consensus       199 p~~iA~~Ye~~GAa--aISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~  274 (355)
                      ..++++..++.|..  .|    |+.+-..+++.+..+|+. +++||..-+-+.+++++.+....| +|.|.+ +.. =+-
T Consensus       198 a~~~~~~l~~~~i~~~~i----E~P~~~~~~~~~~~l~~~-~~ipia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGi  271 (345)
T 2zad_A          198 AVEFARAVYQKGIDIAVY----EQPVRREDIEGLKFVRFH-SPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMK-SGI  271 (345)
T ss_dssp             HHHHHHHHHHTTCCCSEE----ECCSCTTCHHHHHHHHHH-SSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHH-HHH
T ss_pred             HHHHHHHHHhcCCCeeee----eCCCCcccHHHHHHHHHh-CCCCEEEeCCcCCHHHHHHHHHhCCCCEEEEeccc-ccH
Confidence            34677788888866  43    444566889999999986 899999999999999999988777 677766 233 233


Q ss_pred             HHHHHHHHHHHHcCCcEEEE
Q 018446          275 LDIRYMTKICKLLGLTALVE  294 (355)
Q Consensus       275 ~~L~~L~~~A~~LGLeaLVE  294 (355)
                      .+...+.++|+..|+.+.+-
T Consensus       272 t~~~~i~~~A~~~g~~~~~~  291 (345)
T 2zad_A          272 SDALAIVEIAESSGLKLMIG  291 (345)
T ss_dssp             HHHHHHHHHHHTTTCEEEEC
T ss_pred             HHHHHHHHHHHHcCCeEEEe
Confidence            45677889999999996654

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=84.70  E-value=0.82  Score=43.54  Aligned_cols=88  Identities=18%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             CHHHHHHHHHHcCceEEEEecc----C--CCCCC-CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTD----E--KYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIA  269 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD----~--~fF~G-S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIa  269 (355)
                      +..++|+.+++.|++.|.|-.-    .  ....| .++.+..+|++ +++||+.--=|-++.+..++...| ||+|.+--
T Consensus       230 ~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR  308 (338)
T 1z41_A          230 DHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQ-ADMATGAVGMITDGSMAEEILQNGRADLIFIGR  308 (338)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH-HCCEEEECSSCCSHHHHHHHHHTTSCSEEEECH
T ss_pred             HHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHcCCceEEeecH
Confidence            4678999999999999998532    1  11222 46888899986 899999988888999999999999 99998876


Q ss_pred             hcCCHHHHHHHHHHHHHcC
Q 018446          270 AVLPDLDIRYMTKICKLLG  288 (355)
Q Consensus       270 aiL~~~~L~~L~~~A~~LG  288 (355)
                      ++|.+-++-  .++...++
T Consensus       309 ~~i~nPdl~--~ki~~~~~  325 (338)
T 1z41_A          309 ELLRDPFFA--RTAAKQLN  325 (338)
T ss_dssp             HHHHCTTHH--HHHHHHTT
T ss_pred             HHHhCchHH--HHHHcCCC
Confidence            666554442  24444444

>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B

Probab=84.69  E-value=3.8  Score=39.16  Aligned_cols=68  Identities=16%  Similarity=0.183  Sum_probs=56.9

Q ss_pred             CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCHHHHHHHHHHHHHcCCcEEEE
Q 018446          226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDLDIRYMTKICKLLGLTALVE  294 (355)
Q Consensus       226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~~L~~L~~~A~~LGLeaLVE  294 (355)
                      +++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+ ...+=+-.+...+.++|+..|+.+.+-
T Consensus       225 d~~~~~~l~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~  294 (378)
T 2qdd_A          225 TLDQCAHVARR-VANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIE  294 (378)
T ss_dssp             SHHHHHHHHTT-CCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEEC
T ss_pred             CHHHHHHHHHh-CCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEec
Confidence            99999999985 899999999999999999887766 788887 444435667788999999999996654

>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A

Probab=84.49  E-value=2.4  Score=41.74  Aligned_cols=100  Identities=5%  Similarity=-0.022  Sum_probs=76.6

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHHH
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLDI  277 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~L  277 (355)
                      ..+++..++.|...|    |+.+-.++++.+..+|+. +++||..-+-+.++++..+....| +|.|.+=+.-+ +-.+.
T Consensus       247 i~~~~~Le~~~i~~i----EeP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~~~~GGit~a  321 (412)
T 3stp_A          247 KRMLPKLAPYEPRWL----EEPVIADDVAGYAELNAM-NIVPISGGEHEFSVIGCAELINRKAVSVLQYDTNRVGGITAA  321 (412)
T ss_dssp             HHHHHHHGGGCCSEE----ECCSCTTCHHHHHHHHHT-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHH
T ss_pred             HHHHHHHHhcCCCEE----ECCCCcccHHHHHHHHhC-CCCCEEeCCCCCCHHHHHHHHHcCCCCEEecChhhcCCHHHH
Confidence            456788888887665    555667899999999996 899999999999999999998876 78887744444 34567


Q ss_pred             HHHHHHHHHcCCcEEEEeCCHHHHHHH
Q 018446          278 RYMTKICKLLGLTALVEVHDEREMDRV  304 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVEVH~~eELerA  304 (355)
                      ..+..+|+..|+.+.+-.-...-+.-+
T Consensus       322 ~kia~~A~a~gi~v~~h~~~aa~~hla  348 (412)
T 3stp_A          322 QKINAIAEAAQIPVIPHAGQMHNYHLT  348 (412)
T ss_dssp             HHHHHHHHHHTCCBCCSSCSHHHHHHH
T ss_pred             HHHHHHHHHcCCEEEeccHHHHHHHHH
Confidence            788999999999977544333333333

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=84.43  E-value=0.72  Score=43.67  Aligned_cols=96  Identities=20%  Similarity=0.169  Sum_probs=67.4

Q ss_pred             CccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEecc-CCCC---CCCHHHHHHHHh
Q 018446          160 ARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTD-EKYF---KGSFENLEAVRS  235 (355)
Q Consensus       160 ~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD-~~fF---~GS~edL~~VR~  235 (355)
                      +..+...++..    + ..||.-+              +..+.|+..++.||++|.|-.- ....   ..+++.+..+++
T Consensus        99 p~~~i~~l~~~----g-~~v~~~v--------------~~~~~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~  159 (332)
T 2z6i_A           99 PSKYMERFHEA----G-IIVIPVV--------------PSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVAT  159 (332)
T ss_dssp             GGGTHHHHHHT----T-CEEEEEE--------------SSHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHc----C-CeEEEEe--------------CCHHHHHHHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHH
Confidence            35677777653    3 3566544              1235678888899999998431 1111   124678888888


Q ss_pred             cCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446          236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL  275 (355)
Q Consensus       236 a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~  275 (355)
                      . +++||+.-==|-++-++.++..+|||+|.+--+++...
T Consensus       160 ~-~~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~  198 (332)
T 2z6i_A          160 A-ISIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAK  198 (332)
T ss_dssp             H-CSSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBT
T ss_pred             h-cCCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCc
Confidence            6 89999886555679999999999999999877776543

>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}

Probab=84.32  E-value=3.7  Score=37.05  Aligned_cols=136  Identities=13%  Similarity=0.108  Sum_probs=85.4

Q ss_pred             ccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCC-CCCHHHHHHHHhcCCC
Q 018446          161 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYF-KGSFENLEAVRSAGVK  239 (355)
Q Consensus       161 rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF-~GS~edL~~VR~a~v~  239 (355)
                      ..|.+.|....  .....+..|+|.....    .+. -...+++...+.|..      +.-.| .-+.+.|..+|+...+
T Consensus       100 PtL~evL~~~~--~~~~~l~iEiK~~~~~----~~~-~~~~v~~~l~~~~~~------~~vii~SF~~~~l~~~~~~~p~  166 (252)
T 2pz0_A          100 PTLYEVFELIG--DKDFLVNIEIKSGIVL----YPG-IEEKLIKAIKEYNFE------ERVIISSFNHYSLRDVKKMAPH  166 (252)
T ss_dssp             CBHHHHHHHHT--TSCCEEEEEECCSSCC----CTT-HHHHHHHHHHHTTCT------TTEEEEESBHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHhh--hcCCeEEEEeCCCCcc----cHH-HHHHHHHHHHhcCCC------CCEEEEeCCHHHHHHHHHHCCC
Confidence            34666665432  1246799999954321    011 123455666665532      22122 2467888888875455


Q ss_pred             CCe--eccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEEee
Q 018446          240 CPL--LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       240 lPV--LrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIGIN  316 (355)
                      +|+  |..+..-+..  ..++..|+|++-.-...+++    .+++.+++.|+.+.+ -|++.+++++.+++ |++-|--|
T Consensus       167 ~~~~~l~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~----~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~-GvdgIiTD  239 (252)
T 2pz0_A          167 LKIGLLYQCGLVEPW--HMALRMEAYSLHPFYFNIIP----ELVEGCKKNGVKLFPWTVDRKEDMERMIKA-GVDGIITD  239 (252)
T ss_dssp             SEEEEEECSBCSSTH--HHHHHTTCSEEEEBGGGCCH----HHHHHHHHTTCEECCBCCCSHHHHHHHHHH-TCSEEEES
T ss_pred             CCEEEEecCccccHH--HHHHHcCCeEEecchhcCCH----HHHHHHHHCCCEEEEECCCCHHHHHHHHHc-CCCEEEcC
Confidence            653  3343333322  34677899998776666764    678999999998876 57899999999987 88876544

>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0

Probab=84.04  E-value=5.4  Score=35.30  Aligned_cols=62  Identities=16%  Similarity=0.176  Sum_probs=42.4

Q ss_pred             HHHHHHHcCCcchHHHHhcCC------------HHHHHHHHHHHHHcCCcEEEEe-----------CCHHHHHHHhccCC
Q 018446          253 QIYYARTKGADAVLLIAAVLP------------DLDIRYMTKICKLLGLTALVEV-----------HDEREMDRVLGIEG  309 (355)
Q Consensus       253 QI~eAr~~GADAVLLIaaiL~------------~~~L~~L~~~A~~LGLeaLVEV-----------H~~eELerAl~l~g  309 (355)
                      -|..|..+||+.|.+... .+            -+.|.++.++|.+.|+...+|.           .+.+++.+.++.-+
T Consensus        98 ~i~~A~~lGa~~v~~~~g-~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~l~~~v~  176 (269)
T 3ngf_A           98 ALHYALALDCRTLHAMSG-ITEGLDRKACEETFIENFRYAADKLAPHGITVLVEPLNTRNMPGYFIVHQLEAVGLVKRVN  176 (269)
T ss_dssp             HHHHHHHTTCCEEECCBC-BCTTSCHHHHHHHHHHHHHHHHHHHGGGTCEEEECCCCTTTSTTBSCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCEEEEccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCcccCccchhcCHHHHHHHHHHhC
Confidence            366688888888776444 22            1357778889999999999995           36777777665323


Q ss_pred             CeEEEe
Q 018446          310 IELIGI  315 (355)
Q Consensus       310 a~iIGI  315 (355)
                      .+-+|+
T Consensus       177 ~~~vg~  182 (269)
T 3ngf_A          177 RPNVAV  182 (269)
T ss_dssp             CTTEEE
T ss_pred             CCCCCe
Confidence            334555

>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A

Probab=84.04  E-value=4.4  Score=39.18  Aligned_cols=116  Identities=15%  Similarity=0.074  Sum_probs=83.2

Q ss_pred             HHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCe
Q 018446          163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL  242 (355)
Q Consensus       163 F~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPV  242 (355)
                      ...++++..   ....+..+.     . |-+.. -+...+++..++.|..-|    |+.+-..+++.+..+|+. +++||
T Consensus       182 ~v~avR~a~---~~~~l~vDa-----n-~~~~~-~~A~~~~~~L~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~iPI  246 (385)
T 3i6e_A          182 RLELIARDF---PEFRVRVDY-----N-QGLEI-DEAVPRVLDVAQFQPDFI----EQPVRAHHFELMARLRGL-TDVPL  246 (385)
T ss_dssp             HHHHHHHHC---TTSEEEEEC-----T-TCCCG-GGHHHHHHHHHTTCCSCE----ECCSCTTCHHHHHHHHTT-CSSCE
T ss_pred             HHHHHHHhC---CCCeEEEEC-----C-CCCCH-HHHHHHHHHHHhcCCCEE----ECCCCcccHHHHHHHHHh-CCCCE
Confidence            344555543   224577664     1 22221 245678888988886554    555667889999999985 89999


Q ss_pred             eccccccCHHHHHHHHHcC-CcchHHHHh-cCCHHHHHHHHHHHHHcCCcEEE
Q 018446          243 LCKEFIVDAWQIYYARTKG-ADAVLLIAA-VLPDLDIRYMTKICKLLGLTALV  293 (355)
Q Consensus       243 LrKDFIIdpyQI~eAr~~G-ADAVLLIaa-iL~~~~L~~L~~~A~~LGLeaLV  293 (355)
                      ..-+-+.+.+++.+....| +|.|.+=+. +=+-.+...+.++|+..|+.+.+
T Consensus       247 a~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~  299 (385)
T 3i6e_A          247 LADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYG  299 (385)
T ss_dssp             EESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEE
T ss_pred             EEeCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCEEEe
Confidence            9999999999999888766 677776333 33455778899999999999865

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=84.01  E-value=0.87  Score=42.85  Aligned_cols=77  Identities=21%  Similarity=0.220  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHHcCceEEEEec--cCCCCCC--CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHH-cCCcchHHHHhcC
Q 018446          198 DPVEIARSYEKGGAACLSILT--DEKYFKG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAVLLIAAVL  272 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLT--D~~fF~G--S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~-~GADAVLLIaaiL  272 (355)
                      |..++|+.+++.|+++|.|-.  ....+.|  .++.+..+++   ++||+.-==|-++-++.++.. .|||+|.+=-++|
T Consensus       141 ~~~~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~---~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l  217 (318)
T 1vhn_A          141 EVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAI  217 (318)
T ss_dssp             CHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC---SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGT
T ss_pred             HHHHHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc---CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHH
Confidence            566999999999999999852  1223333  4555666653   799999888899999999998 7999998876666


Q ss_pred             CHHHH
Q 018446          273 PDLDI  277 (355)
Q Consensus       273 ~~~~L  277 (355)
                      .+..+
T Consensus       218 ~~P~l  222 (318)
T 1vhn_A          218 GRPWI  222 (318)
T ss_dssp             TCTTH
T ss_pred             hCcch
Confidence            65444

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=83.88  E-value=2.2  Score=36.88  Aligned_cols=105  Identities=10%  Similarity=0.127  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI  277 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L  277 (355)
                      ++.+ ++...+.||+.| |.  + .|.  .+.+...++  ..+|++. + +.++-++.+|..+|||+|-+...-+  ..+
T Consensus        72 ~~~~-~~~a~~~Gad~i-v~--~-~~~--~~~~~~~~~--~g~~vi~-g-~~t~~e~~~a~~~Gad~vk~~~~~~--~g~  138 (205)
T 1wa3_A           72 SVEQ-CRKAVESGAEFI-VS--P-HLD--EEISQFCKE--KGVFYMP-G-VMTPTELVKAMKLGHTILKLFPGEV--VGP  138 (205)
T ss_dssp             SHHH-HHHHHHHTCSEE-EC--S-SCC--HHHHHHHHH--HTCEEEC-E-ECSHHHHHHHHHTTCCEEEETTHHH--HHH
T ss_pred             CHHH-HHHHHHcCCCEE-Ec--C-CCC--HHHHHHHHH--cCCcEEC-C-cCCHHHHHHHHHcCCCEEEEcCccc--cCH
Confidence            5654 456666899999 44  2 233  455555555  4789987 2 3468899999999999986542211  134


Q ss_pred             HHHHHHHHHc-CCcEEEE--eCCHHHHHHHhccCCCeEEEeeC
Q 018446          278 RYMTKICKLL-GLTALVE--VHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       278 ~~L~~~A~~L-GLeaLVE--VH~~eELerAl~l~ga~iIGINN  317 (355)
                      ..+-++...+ ++-.++.  | +.+.+..++.+ |++.+++=.
T Consensus       139 ~~~~~l~~~~~~~pvia~GGI-~~~~~~~~~~~-Ga~~v~vGs  179 (205)
T 1wa3_A          139 QFVKAMKGPFPNVKFVPTGGV-NLDNVCEWFKA-GVLAVGVGS  179 (205)
T ss_dssp             HHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHHH-TCSCEEECH
T ss_pred             HHHHHHHHhCCCCcEEEcCCC-CHHHHHHHHHC-CCCEEEECc
Confidence            4444555555 4444443  3 46788888886 888888754

>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A

Probab=83.68  E-value=2.5  Score=37.02  Aligned_cols=62  Identities=21%  Similarity=0.210  Sum_probs=44.1

Q ss_pred             HHHHHHHcCCcchHHHHhcCC-------------HHHHHHHHHHHHHcCCcEEEEeC------------CHHHHHHHhcc
Q 018446          253 QIYYARTKGADAVLLIAAVLP-------------DLDIRYMTKICKLLGLTALVEVH------------DEREMDRVLGI  307 (355)
Q Consensus       253 QI~eAr~~GADAVLLIaaiL~-------------~~~L~~L~~~A~~LGLeaLVEVH------------~~eELerAl~l  307 (355)
                      .|..|..+||+.|.+.....+             -+.|.++.++|.+.|+...+|-|            +.+++.+.++.
T Consensus        88 ~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~~~~~~~l~~~  167 (275)
T 3qc0_A           88 AVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLAIEPLHPMYAADRACVNTLGQALDICET  167 (275)
T ss_dssp             HHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCGGGTTTTBSCCCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeECCCcccCCccccCCHHHHHHHHHH
Confidence            467788899998877664443             14588889999999999999964            46777776653


Q ss_pred             CCCeEEEe
Q 018446          308 EGIELIGI  315 (355)
Q Consensus       308 ~ga~iIGI  315 (355)
                      -+. -+|+
T Consensus       168 ~~~-~vg~  174 (275)
T 3qc0_A          168 LGP-GVGV  174 (275)
T ss_dssp             HCT-TEEE
T ss_pred             hCc-ccEE
Confidence            232 3444

>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A*

Probab=83.64  E-value=2.4  Score=39.93  Aligned_cols=73  Identities=16%  Similarity=0.205  Sum_probs=56.4

Q ss_pred             HHHHHcCCcchHHHHh-------------cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446          255 YYARTKGADAVLLIAA-------------VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       255 ~eAr~~GADAVLLIaa-------------iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~  321 (355)
                      .+....|+|.|-+.+.             .+++++++.+++.|+++|+.+-+-+++.++++.++++ |++.|.      +
T Consensus       182 ~~~~~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~al~~-G~~~i~------H  254 (426)
T 2r8c_A          182 REELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRC-GVRTIE------H  254 (426)
T ss_dssp             HHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHT-TCSEEE------E
T ss_pred             HHHHHcCCCEEEEEecCCCCCCCCCcccccCCHHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHc-CCCEEe------c
Confidence            3344578888887765             7899999999999999999999999999999999996 876554      3


Q ss_pred             ccccChhhHHhhh
Q 018446          322 TFEVDNSNTKKLL  334 (355)
Q Consensus       322 TfevDl~~t~~L~  334 (355)
                      .+-++.+....+.
T Consensus       255 ~~~~~~~~~~~~~  267 (426)
T 2r8c_A          255 GNLIDDETARLVA  267 (426)
T ss_dssp             CTTCCHHHHHHHH
T ss_pred             CCcCCHHHHHHHH
Confidence            3445555544444

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=83.62  E-value=2  Score=40.90  Aligned_cols=41  Identities=15%  Similarity=0.174  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHcC---CcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          277 IRYMTKICKLLG---LTALVEVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       277 L~~L~~~A~~LG---LeaLVEVH~~eELerAl~l~ga~iIGINNR  318 (355)
                      +..-++.+++..   ....|||+|.+|++.|+.+ |+++|+..|-
T Consensus       179 i~~av~~ar~~~~~~~~I~VEV~tleea~eA~~a-GaD~I~LDn~  222 (285)
T 1o4u_A          179 AERAVQEVRKIIPFTTKIEVEVENLEDALRAVEA-GADIVMLDNL  222 (285)
T ss_dssp             HHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHT-TCSEEEEESC
T ss_pred             HHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc-CCCEEEECCC
Confidence            344566677765   6789999999999999996 9999999994

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=83.56  E-value=1.6  Score=42.07  Aligned_cols=68  Identities=18%  Similarity=0.253  Sum_probs=48.1

Q ss_pred             cCHHHHHHHHHcCC--------cchHH----HHhcCCHHHHHHHHHHHHHc--CCcEEEEeCCHHHHHHHhccCCCeEEE
Q 018446          249 VDAWQIYYARTKGA--------DAVLL----IAAVLPDLDIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIG  314 (355)
Q Consensus       249 IdpyQI~eAr~~GA--------DAVLL----IaaiL~~~~L~~L~~~A~~L--GLeaLVEVH~~eELerAl~l~ga~iIG  314 (355)
                      +-..|-|-.+.-|+        |+||+    |+++=+   +..-++.+++.  .+...|||.|.+|++.|+.+ |+++|.
T Consensus       157 lR~lekyAV~~GGg~nHR~gL~D~vLIKdNHi~~~G~---i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a-GaDiIm  232 (300)
T 3l0g_A          157 LRMLDKYSVCIGGGESYRDNLCDGVLIKDNHIASCGS---ITLAIQRLRKNLKNEYIAIECDNISQVEESLSN-NVDMIL  232 (300)
T ss_dssp             CHHHHHHHHHHTTCBCSCSSTTSCEEECHHHHHHHSC---HHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT-TCSEEE
T ss_pred             hhHHHHHHHHhcCCcccccCCcceEEEcHhHHHHhCC---HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc-CCCEEE
Confidence            44577788888787        67776    332212   23334444443  57889999999999999997 999999


Q ss_pred             eeCCCC
Q 018446          315 INNRNL  320 (355)
Q Consensus       315 INNRdL  320 (355)
                      ..|-+.
T Consensus       233 LDn~s~  238 (300)
T 3l0g_A          233 LDNMSI  238 (300)
T ss_dssp             EESCCH
T ss_pred             ECCCCH
Confidence            998544

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=83.53  E-value=5.6  Score=38.97  Aligned_cols=108  Identities=16%  Similarity=0.098  Sum_probs=67.5

Q ss_pred             HHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeec--cccccCHHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446          201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC--KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR  278 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLr--KDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~  278 (355)
                      ++|.+..+.|  ++.|+.-  +  -+.+++....+. +..+++.  .+--.+.-.+..+..+|+|.|.+=.+.-....+.
T Consensus        57 ~lA~A~a~~G--g~gvi~~--~--~s~ee~~~~i~~-~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~id~a~G~~~~~~  129 (361)
T 3r2g_A           57 NMANFMHSKG--AMGALHR--F--MTIEENIQEFKK-CKGPVFVSVGCTENELQRAEALRDAGADFFCVDVAHAHAKYVG  129 (361)
T ss_dssp             HHHHHHHHTT--CEEBCCS--C--SCHHHHHHHHHT-CCSCCBEEECSSHHHHHHHHHHHHTTCCEEEEECSCCSSHHHH
T ss_pred             HHHHHHHHcC--CCEEEeC--C--CCHHHHHHHHhh-cceEEEEEcCCCHHHHHHHHHHHHcCCCEEEEeCCCCCcHhHH
Confidence            5888887766  3445542  2  577777655442 3333322  1111123456677788999765533322223444


Q ss_pred             HHHHHHHHc--CCcEEE-EeCCHHHHHHHhccCCCeEEEee
Q 018446          279 YMTKICKLL--GLTALV-EVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       279 ~L~~~A~~L--GLeaLV-EVH~~eELerAl~l~ga~iIGIN  316 (355)
                      +.++..++.  ++..++ .|.|.+++..+.++ |++.|-|-
T Consensus       130 e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a-GaD~I~Vg  169 (361)
T 3r2g_A          130 KTLKSLRQLLGSRCIMAGNVATYAGADYLASC-GADIIKAG  169 (361)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT-TCSEEEEC
T ss_pred             HHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc-CCCEEEEc
Confidence            556666654  899999 79999999999996 99988884

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=83.42  E-value=1.7  Score=40.80  Aligned_cols=74  Identities=20%  Similarity=0.145  Sum_probs=54.0

Q ss_pred             HHHHHHHHcCceEEEEec-cCCCC-----CCCHHHHHHHHhcCCCCCeecccccc-CHHHHHHHHHcCCcchHHHHhcCC
Q 018446          201 EIARSYEKGGAACLSILT-DEKYF-----KGSFENLEAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLT-D~~fF-----~GS~edL~~VR~a~v~lPVLrKDFII-dpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      +.|+..++.||++|.|-. +....     ..+++.+..+++. +++||+. +..| ++-++.++..+|||+|.+--+++.
T Consensus       129 ~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~-~~iPvia-aGGI~~~~~v~~al~~GAdgV~vGs~~~~  206 (328)
T 2gjl_A          129 RHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR-LRVPIIA-SGGFADGRGLVAALALGADAINMGTRFLA  206 (328)
T ss_dssp             HHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT-CCSCEEE-ESSCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred             HHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh-cCCCEEE-ECCCCCHHHHHHHHHcCCCEEEECHHHHc
Confidence            356667778999998732 11111     1346788888875 7999876 5666 899999999999999998777765


Q ss_pred             HHH
Q 018446          274 DLD  276 (355)
Q Consensus       274 ~~~  276 (355)
                      ..+
T Consensus       207 ~~e  209 (328)
T 2gjl_A          207 TRE  209 (328)
T ss_dssp             SSS
T ss_pred             Ccc
Confidence            443

>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}

Probab=83.25  E-value=2  Score=41.78  Aligned_cols=93  Identities=11%  Similarity=0.009  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ...+++.+++.|...|    |+.+-.++++.+..+|+. +++||..-+-+.++++..+....| +|.|.+=+.-. +-.+
T Consensus       217 A~~~~~~L~~~~i~~i----EeP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~  291 (394)
T 3mqt_A          217 ARWTFRQLEDIDLYFI----EACLQHDDLIGHQKLAAA-INTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRCGGVTE  291 (394)
T ss_dssp             HHHHHHHTGGGCCSEE----ESCSCTTCHHHHHHHHHH-SSSEEEECTTCCHHHHHHHHHHHHCCSEECCCTTTSSCHHH
T ss_pred             HHHHHHHHhhcCCeEE----ECCCCcccHHHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHcCCCCeEecCccccCCHHH
Confidence            4578888888887665    555667899999999986 899999999999999999888765 78887755554 4567


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCH
Q 018446          277 IRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ...+..+|+..|+.+.  +|+.
T Consensus       292 ~~~ia~~A~~~gi~~~--~h~~  311 (394)
T 3mqt_A          292 LLRIMDICEHHNAQLM--PHNW  311 (394)
T ss_dssp             HHHHHHHHHHHTCEEC--CCCC
T ss_pred             HHHHHHHHHHcCCEEe--ccCC
Confidence            7889999999999975  7874

>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}

Probab=83.05  E-value=2.7  Score=40.71  Aligned_cols=93  Identities=18%  Similarity=0.201  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCCHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~~  276 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.+++++.+....| +|.|.+ +..+=+-.+
T Consensus       226 a~~~~~~l~~~~i~~i----EeP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite  300 (410)
T 2qq6_A          226 SIRFARAMEPFGLLWL----EEPTPPENLDALAEVRRS-TSTPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCGGLAE  300 (410)
T ss_dssp             HHHHHHHHGGGCCSEE----ECCSCTTCHHHHHHHHTT-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHHH
T ss_pred             HHHHHHHHhhcCCCeE----ECCCChhhHHHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence            3456677777776543    444556789999999985 899999999999999999998877 788777 333323446


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCH
Q 018446          277 IRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ...+.++|+..|+.+.+  |+.
T Consensus       301 ~~~ia~~A~~~g~~~~~--h~~  320 (410)
T 2qq6_A          301 AKRIANLAELDYIPFAP--HNV  320 (410)
T ss_dssp             HHHHHHHHHTTTCCBCC--BCC
T ss_pred             HHHHHHHHHHcCCeEee--cCC
Confidence            77889999999999776  654

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=82.98  E-value=0.52  Score=40.81  Aligned_cols=77  Identities=19%  Similarity=0.049  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHcCceEE-EEeccCCCCCC-CH--HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          198 DPVEIARSYEKGGAACL-SILTDEKYFKG-SF--ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaI-SVLTD~~fF~G-S~--edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      +|.+.++.+.+.|++.+ ..++-...|.| ++  +.++.++..  ++|+ .=++.|.+-.+.++..+|||+|...-++..
T Consensus       115 ~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~--~~pi-~v~GGI~~~~~~~~~~aGad~vvvGsaI~~  191 (207)
T 3ajx_A          115 DKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA--RVPF-SVAGGVKVATIPAVQKAGAEVAVAGGAIYG  191 (207)
T ss_dssp             SHHHHHHHHHHTTCSEEEEECCHHHHTSTTCCTHHHHHHHHHH--TSCE-EEESSCCGGGHHHHHHTTCSEEEESHHHHT
T ss_pred             ChHHHHHHHHHhCCCEEEEEecccccccCCCchHHHHHHhhCC--CCCE-EEECCcCHHHHHHHHHcCCCEEEEeeeccC
Confidence            57776777777799999 55443222333 22  344444431  5675 458999999999999999999998888876


Q ss_pred             HHHH
Q 018446          274 DLDI  277 (355)
Q Consensus       274 ~~~L  277 (355)
                      .++.
T Consensus       192 ~~dp  195 (207)
T 3ajx_A          192 AADP  195 (207)
T ss_dssp             SSSH
T ss_pred             CCCH
Confidence            5443

>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}

Probab=82.88  E-value=3.2  Score=40.46  Aligned_cols=93  Identities=13%  Similarity=0.113  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ...+++.+++.|...|    |+.+-.++++.+..+|+. +++||..-+-+.++++..+....| +|.|.+=+.-. +-.+
T Consensus       224 A~~~~~~l~~~~i~~i----EeP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~  298 (404)
T 4e5t_A          224 AKRLARRLEAYDPLWF----EEPIPPEKPEDMAEVARY-TSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVGGLLE  298 (404)
T ss_dssp             HHHHHHHHGGGCCSEE----ECCSCTTCHHHHHHHHHH-CSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTSSCHHH
T ss_pred             HHHHHHHHhhcCCcEE----ECCCCcccHHHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence            3467788888886655    445666799999999996 899999999999999999988877 68877755555 4567


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCH
Q 018446          277 IRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ...+.++|+..|+.+  -+|+.
T Consensus       299 ~~~ia~~A~~~gi~~--~~h~~  318 (404)
T 4e5t_A          299 AKKIAAMAECHSAQI--APHLY  318 (404)
T ss_dssp             HHHHHHHHHHTTCEE--CCCCS
T ss_pred             HHHHHHHHHHcCCEE--eecCC
Confidence            788999999999985  56763

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=82.74  E-value=3.1  Score=36.13  Aligned_cols=100  Identities=12%  Similarity=0.165  Sum_probs=61.3

Q ss_pred             HHHHHHHcCceEEEEeccCCCCCC-CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH-hcCCHHHHHH
Q 018446          202 IARSYEKGGAACLSILTDEKYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA-AVLPDLDIRY  279 (355)
Q Consensus       202 iA~~Ye~~GAaaISVLTD~~fF~G-S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa-aiL~~~~L~~  279 (355)
                      .+..+.+.||+++.       +++ ..+.+...++.  ..+++.-  +-++.++.+|...|||.|++-. ..++   +..
T Consensus        72 ~i~~a~~~Gad~V~-------~~~~~~~~~~~~~~~--g~~~~~g--~~t~~e~~~a~~~G~d~v~v~~t~~~g---~~~  137 (212)
T 2v82_A           72 QVDALARMGCQLIV-------TPNIHSEVIRRAVGY--GMTVCPG--CATATEAFTALEAGAQALKIFPSSAFG---PQY  137 (212)
T ss_dssp             HHHHHHHTTCCEEE-------CSSCCHHHHHHHHHT--TCEEECE--ECSHHHHHHHHHTTCSEEEETTHHHHC---HHH
T ss_pred             HHHHHHHcCCCEEE-------eCCCCHHHHHHHHHc--CCCEEee--cCCHHHHHHHHHCCCCEEEEecCCCCC---HHH
Confidence            56777788999985       222 34555555443  4555443  4578899999999999998521 1122   333


Q ss_pred             HHHHHHHcC--CcEEEE--eCCHHHHHHHhccCCCeEEEeeC
Q 018446          280 MTKICKLLG--LTALVE--VHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       280 L~~~A~~LG--LeaLVE--VH~~eELerAl~l~ga~iIGINN  317 (355)
                      +-+++..++  +..++.  | +.+++..++.+ |++.+.|=.
T Consensus       138 ~~~l~~~~~~~ipvia~GGI-~~~~i~~~~~~-Ga~gv~vGs  177 (212)
T 2v82_A          138 IKALKAVLPSDIAVFAVGGV-TPENLAQWIDA-GCAGAGLGS  177 (212)
T ss_dssp             HHHHHTTSCTTCEEEEESSC-CTTTHHHHHHH-TCSEEEECT
T ss_pred             HHHHHHhccCCCeEEEeCCC-CHHHHHHHHHc-CCCEEEECh
Confidence            444444444  444333  3 37778887876 888887753

>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}

Probab=82.65  E-value=2  Score=42.30  Aligned_cols=91  Identities=9%  Similarity=0.016  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCC-CCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDL  275 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~  275 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. ++ +||..-+-+.++.++.+....| +|.|.+=..-. +-.
T Consensus       245 ai~~~~~L~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit  319 (428)
T 3bjs_A          245 ARRVLPVLAEIQAGWL----EEPFACNDFASYREVAKI-TPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPDLSKCGGIT  319 (428)
T ss_dssp             HHHHHHHHHHTTCSCE----ECCSCTTCHHHHHHHTTT-CSSSCEEECTTCCSHHHHHHHHTTCCEEEECCBTTTSSCHH
T ss_pred             HHHHHHHHHhcCCCEE----ECCCCccCHHHHHHHHHh-CCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHH
Confidence            3466777888887643    455666789999999985 88 9999999999999999998877 67777734443 556


Q ss_pred             HHHHHHHHHHHcCCcEEEE
Q 018446          276 DIRYMTKICKLLGLTALVE  294 (355)
Q Consensus       276 ~L~~L~~~A~~LGLeaLVE  294 (355)
                      +...+.++|+..|+.+.+-
T Consensus       320 ea~~ia~~A~~~gi~~~~~  338 (428)
T 3bjs_A          320 EGIRIAAMASAYRIPINAH  338 (428)
T ss_dssp             HHHHHHHHHHHTTCCBCCB
T ss_pred             HHHHHHHHHHHcCCeEEec
Confidence            7788999999999997665

>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A

Probab=82.62  E-value=3.6  Score=39.34  Aligned_cols=117  Identities=10%  Similarity=0.070  Sum_probs=83.5

Q ss_pred             HHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCe
Q 018446          163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL  242 (355)
Q Consensus       163 F~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPV  242 (355)
                      ...++++...  ....+..+.     . |-+.. -+...+++..++.|..-   + |+.+-..+++.+..+|+. +++||
T Consensus       177 ~v~avR~~~g--~~~~l~vDa-----n-~~~~~-~~a~~~~~~l~~~~i~~---i-EqP~~~~~~~~~~~l~~~-~~iPi  242 (370)
T 1chr_A          177 HMEALSNSLG--SKAYLRVDV-----N-QAWDE-QVASVYIPELEALGVEL---I-EQPVGRENTQALRRLSDN-NRVAI  242 (370)
T ss_dssp             HHHHHHHHSS--TTCCEEEEC-----T-TCCCT-THHHHHTHHHHTTTEEE---E-ECCSCTTCHHHHHHHHHH-SCSEE
T ss_pred             HHHHHHHhcC--CCCEEEEEC-----C-CCCCH-HHHHHHHHHHHhcCCCE---E-ECCCCcccHHHHHHHHhh-CCCCE
Confidence            3455665431  224577664     1 22332 24556788888877443   4 444667889999999986 89999


Q ss_pred             eccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHHHHHHHHHHHHcCCcEEE
Q 018446          243 LCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLDIRYMTKICKLLGLTALV  293 (355)
Q Consensus       243 LrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~L~~L~~~A~~LGLeaLV  293 (355)
                      ..-+-+.+.+++.+....| +|.|.+=..-+ +-.+...+.++|+..|+.+.+
T Consensus       243 a~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g~~~~~  295 (370)
T 1chr_A          243 MADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYG  295 (370)
T ss_dssp             EESSSCCSHHHHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHHTCEEEE
T ss_pred             EeCCCcCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEe
Confidence            9999999999999988776 78877745444 456788899999999999764

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=82.34  E-value=2.7  Score=36.86  Aligned_cols=86  Identities=16%  Similarity=0.163  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHcCceEEEEecc--CCCCCC----CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446          198 DPVEIARSYEKGGAACLSILTD--EKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD--~~fF~G----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      ++.+ ++.+.+.||+.|.+-+=  ...|.|    +++.++.+++. +++||+. +=.|++-.+.++..+|||+|.+.-++
T Consensus       119 t~~~-~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~-~~~pvia-~GGI~~~nv~~~~~~Ga~gv~vgs~i  195 (221)
T 1yad_A          119 SLEE-AVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR-ISIPVIA-IGGMTPDRLRDVKQAGADGIAVMSGI  195 (221)
T ss_dssp             SHHH-HHHHHHTTCSEEEEECCC----------CHHHHHHHHHHH-CCSCEEE-ESSCCGGGHHHHHHTTCSEEEESHHH
T ss_pred             CHHH-HHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHh-CCCCEEE-ECCCCHHHHHHHHHcCCCEEEEhHHh
Confidence            4554 45566789999877431  111222    36778888775 6889765 45569999999999999999999888


Q ss_pred             CCH----HHHHHHHHHHHH
Q 018446          272 LPD----LDIRYMTKICKL  286 (355)
Q Consensus       272 L~~----~~L~~L~~~A~~  286 (355)
                      +..    +.++.|.+..++
T Consensus       196 ~~~~d~~~~~~~~~~~~~~  214 (221)
T 1yad_A          196 FSSAEPLEAARRYSRKLKE  214 (221)
T ss_dssp             HTSSSHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHH
Confidence            853    234445444443

>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}

Probab=82.33  E-value=3.7  Score=39.01  Aligned_cols=119  Identities=9%  Similarity=0.027  Sum_probs=83.6

Q ss_pred             HHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCe
Q 018446          163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL  242 (355)
Q Consensus       163 F~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPV  242 (355)
                      ...++++..   ....+..+.     . |-+... + .++++..++.|..-   +-|| +-..+++.+..+|+. +++||
T Consensus       172 ~v~avr~a~---~~~~l~vDa-----n-~~~~~~-~-~~~~~~l~~~~i~~---iEqP-~~~~d~~~~~~l~~~-~~ipI  235 (369)
T 2zc8_A          172 VLKAVREAF---PEATLTADA-----N-SAYSLA-N-LAQLKRLDELRLDY---IEQP-LAYDDLLDHAKLQRE-LSTPI  235 (369)
T ss_dssp             HHHHHHHHC---TTSCEEEEC-----T-TCCCGG-G-HHHHHGGGGGCCSC---EECC-SCTTCSHHHHHHHHH-CSSCE
T ss_pred             HHHHHHHHc---CCCeEEEec-----C-CCCCHH-H-HHHHHHHHhCCCcE---EECC-CCcccHHHHHHHHhh-CCCCE
Confidence            455666542   123466665     1 223322 3 67778777777543   3344 456789999999986 89999


Q ss_pred             eccccccCHHHHHHHHHcC-CcchHH-HHhcCCHHHHHHHHHHHHHcCCcEEEEeCC
Q 018446          243 LCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLPDLDIRYMTKICKLLGLTALVEVHD  297 (355)
Q Consensus       243 LrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~~~~L~~L~~~A~~LGLeaLVEVH~  297 (355)
                      ..-+-+.+++++.+....| +|.|.+ +..+=+-.+...+.++|+..|+.+++--..
T Consensus       236 a~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~  292 (369)
T 2zc8_A          236 CLDESLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWMGGML  292 (369)
T ss_dssp             EESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred             EEcCccCCHHHHHHHHHhCCCCEEEEchhhhCCHHHHHHHHHHHHHcCCcEEecCcc
Confidence            9999999999999998888 788877 443335557788999999999998664433

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}

Probab=82.28  E-value=1.7  Score=41.90  Aligned_cols=93  Identities=15%  Similarity=0.152  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ..++++..++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.+++++.+....| +|.|.+=+.-. +-.+
T Consensus       231 a~~~~~~l~~~~i~~i----E~P~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite  305 (407)
T 2o56_A          231 AIQFGRMIEELGIFYY----EEPVMPLNPAQMKQVADK-VNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGITE  305 (407)
T ss_dssp             HHHHHHHHGGGCCSCE----ECSSCSSSHHHHHHHHHH-CCSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred             HHHHHHHHHhcCCCEE----eCCCChhhHHHHHHHHHh-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence            3467777888776643    444566789999999986 899999999999999999998887 68877744444 3456


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCH
Q 018446          277 IRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ...+.++|+..|+.+.+  |+.
T Consensus       306 ~~~i~~~A~~~g~~~~~--h~~  325 (407)
T 2o56_A          306 VKKICDMAHVYDKTVQI--HVC  325 (407)
T ss_dssp             HHHHHHHHHTTTCEECC--CCC
T ss_pred             HHHHHHHHHHcCCeEee--cCC
Confidence            77889999999999766  654

>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}

Probab=82.28  E-value=5.3  Score=38.95  Aligned_cols=116  Identities=10%  Similarity=0.083  Sum_probs=83.5

Q ss_pred             HHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCe
Q 018446          163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL  242 (355)
Q Consensus       163 F~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPV  242 (355)
                      ...++++...  ....+..+.     . |-+... + .++++.+++.|..-|    |+.+-.++++.+..+|+. +++||
T Consensus       194 ~v~avR~a~G--~~~~L~vDa-----N-~~w~~~-~-~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~iPI  258 (400)
T 3mwc_A          194 PLQETRRAVG--DHFPLWTDA-----N-SSFELD-Q-WETFKAMDAAKCLFH----EQPLHYEALLDLKELGER-IETPI  258 (400)
T ss_dssp             HHHHHHHHHC--TTSCEEEEC-----T-TCCCGG-G-HHHHHHHGGGCCSCE----ESCSCTTCHHHHHHHHHH-SSSCE
T ss_pred             HHHHHHHhcC--CCCEEEEeC-----C-CCCCHH-H-HHHHHHHHhcCCCEE----eCCCChhhHHHHHHHHhh-CCCCE
Confidence            4556666431  234567663     2 223322 3 678888888886554    455667899999999986 89999


Q ss_pred             eccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHHHHHHHHHHHHcCCcEEE
Q 018446          243 LCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLDIRYMTKICKLLGLTALV  293 (355)
Q Consensus       243 LrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~L~~L~~~A~~LGLeaLV  293 (355)
                      ..-+-+.+.+++.+....| +|.|.+=+.-. +-.+...+.++|+..|+.+.+
T Consensus       259 a~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~  311 (400)
T 3mwc_A          259 CLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLWG  311 (400)
T ss_dssp             EESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEE
T ss_pred             EEeCCcCCHHHHHHHHhcCCCCEEEEcchhhCCHHHHHHHHHHHHHcCCEEEe
Confidence            9999999999999988877 67777633333 456778899999999998754

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*

Probab=82.19  E-value=1.9  Score=41.41  Aligned_cols=126  Identities=18%  Similarity=0.136  Sum_probs=81.9

Q ss_pred             CCceEEeEeeecCCC---CC---CCCCC-CCHHHHHHHHHHcCceEEEEecc---CCCCCCCHH----HHHHHHhcCCCC
Q 018446          175 GLPALIAEVKKASPS---RG---ILRED-FDPVEIARSYEKGGAACLSILTD---EKYFKGSFE----NLEAVRSAGVKC  240 (355)
Q Consensus       175 g~~aVIAEvKRaSPS---kG---~I~~~-~Dp~~iA~~Ye~~GAaaISVLTD---~~fF~GS~e----dL~~VR~a~v~l  240 (355)
                      +++.|+.||--.+|-   .|   .+... -++.+.|+.+.+.||+.|-|-.+   |..+.=|.+    -++.+++. +++
T Consensus        45 ~~p~i~m~I~n~tpdsf~d~i~~~~~~~~~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~-~~v  123 (310)
T 2h9a_B           45 NPPRFALEVFDTPPTDWPDILVEPFKDVINDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADA-IDV  123 (310)
T ss_dssp             SCCEEEEEEESSCCSSCCHHHHGGGTTTTTCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHH-CSS
T ss_pred             CCCeEEEEEeeCCCcccchhhhhhhccHHHHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHh-CCc
Confidence            456789999999993   34   23222 37899999999999999999864   554444443    45556664 688


Q ss_pred             Ceeccccc---cCHHHHHHHHHcCCc--chHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHH
Q 018446          241 PLLCKEFI---VDAWQIYYARTKGAD--AVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH-DEREMDRV  304 (355)
Q Consensus       241 PVLrKDFI---IdpyQI~eAr~~GAD--AVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH-~~eELerA  304 (355)
                      ||---|-.   -++-=+.+|..+|||  +++-=+..+   ....+...|.++|.-.++--. |.+.+++.
T Consensus       124 plsI~DT~~~~~~~~V~eaal~aga~~k~iINdvs~~---~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~  190 (310)
T 2h9a_B          124 PLMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSATKD---NYKPIVATCMVHGHSVVASAPLDINLSKQL  190 (310)
T ss_dssp             CEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEECTT---THHHHHHHHHHHTCEEEEECSSCHHHHHHH
T ss_pred             eEEEECCCCCCCCHHHHHHHHHhCCCCCCEEEECCCC---ccHHHHHHHHHhCCCEEEEChhHHHHHHHH
Confidence            87321211   234446667779998  444333333   457889999999987777433 45555543

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=82.18  E-value=5.8  Score=37.86  Aligned_cols=136  Identities=13%  Similarity=0.142  Sum_probs=82.7

Q ss_pred             CHHHHHHHHHHcCceEEEEe-------ccCCC---CCCCHHHHHHHHhcCCCCCeecc---ccccCHHHHHHHHHcCCcc
Q 018446          198 DPVEIARSYEKGGAACLSIL-------TDEKY---FKGSFENLEAVRSAGVKCPLLCK---EFIVDAWQIYYARTKGADA  264 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVL-------TD~~f---F~GS~edL~~VR~a~v~lPVLrK---DFIIdpyQI~eAr~~GADA  264 (355)
                      +-.++++.+.+.|+..|=|=       +++.|   -.+.++.++.+++...+.|+..-   -.. ..--|..|..+|+|.
T Consensus        31 ~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~-~~~~i~~a~~aGvd~  109 (345)
T 1nvm_A           31 DVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIG-SVHDLKNAYQAGARV  109 (345)
T ss_dssp             HHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTB-CHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcc-cHHHHHHHHhCCcCE
Confidence            34577888888888888762       23322   12456777777764234443221   111 244577888899998


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe-----CCHHHHHH----HhccCCCeEEEeeCCCCCccccChhhHHhhhc
Q 018446          265 VLLIAAVLPDLDIRYMTKICKLLGLTALVEV-----HDEREMDR----VLGIEGIELIGINNRNLETFEVDNSNTKKLLE  335 (355)
Q Consensus       265 VLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV-----H~~eELer----Al~l~ga~iIGINNRdL~TfevDl~~t~~L~~  335 (355)
                      |.+-..+=.-+.....+++|++.|+++.+=+     .+.+.+.+    +.+. |+..|.+..-.  . -..++...+++.
T Consensus       110 v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~-Ga~~i~l~DT~--G-~~~P~~v~~lv~  185 (345)
T 1nvm_A          110 VRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESY-GATCIYMADSG--G-AMSMNDIRDRMR  185 (345)
T ss_dssp             EEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHH-TCSEEEEECTT--C-CCCHHHHHHHHH
T ss_pred             EEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHC-CCCEEEECCCc--C-ccCHHHHHHHHH
Confidence            7664333223578889999999999988777     34444443    3333 78888776431  1 123677777666


Q ss_pred             ccc
Q 018446          336 GER  338 (355)
Q Consensus       336 ~~~  338 (355)
                      .++
T Consensus       186 ~l~  188 (345)
T 1nvm_A          186 AFK  188 (345)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=82.16  E-value=2  Score=41.44  Aligned_cols=72  Identities=17%  Similarity=0.108  Sum_probs=50.2

Q ss_pred             HHHHHHHHcCceEEEEeccCCCC----------CCCHHHHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446          201 EIARSYEKGGAACLSILTDEKYF----------KGSFENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLI  268 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD~~fF----------~GS~edL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI  268 (355)
                      +.|+...++||++|.|-.-+.++          ...+.-|..++++  ..++||+.-==|-++-+|..|.++|||+|.+=
T Consensus       173 e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG  252 (351)
T 2c6q_A          173 EMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLG  252 (351)
T ss_dssp             HHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceecc
Confidence            57888889999999883222111          1123344444332  15799999888999999999999999999664


Q ss_pred             HhcC
Q 018446          269 AAVL  272 (355)
Q Consensus       269 aaiL  272 (355)
                      -.+|
T Consensus       253 ~~fl  256 (351)
T 2c6q_A          253 GMLA  256 (351)
T ss_dssp             TTTT
T ss_pred             HHHh
Confidence            4444

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=82.07  E-value=7.5  Score=37.23  Aligned_cols=114  Identities=18%  Similarity=0.158  Sum_probs=71.1

Q ss_pred             HHHHHHHHHcCceEEEEeccC-------CCCCCCH--------HHHHHHHhcCCCCCeeccc-cccC-------HHH-HH
Q 018446          200 VEIARSYEKGGAACLSILTDE-------KYFKGSF--------ENLEAVRSAGVKCPLLCKE-FIVD-------AWQ-IY  255 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~-------~fF~GS~--------edL~~VR~a~v~lPVLrKD-FIId-------pyQ-I~  255 (355)
                      .+.|+..+++|+++|-+..--       .-|+|++        +-+..+|++ +++||..|= ...+       ..+ +.
T Consensus        73 ~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~-v~~PV~vKiR~g~~~~~~~~~~~~~a~  151 (350)
T 3b0p_A           73 AEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEA-VRVPVTVKMRLGLEGKETYRGLAQSVE  151 (350)
T ss_dssp             HHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHH-CSSCEEEEEESCBTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHH-hCCceEEEEecCcCccccHHHHHHHHH
Confidence            445555667899999887421       2366664        455677775 789998852 2222       122 23


Q ss_pred             HHHHcCCcchHHHHhc----CCH--------HHHHHHHHHHHHc-CCcEEE--EeCCHHHHHHHhccCCCeEEEee
Q 018446          256 YARTKGADAVLLIAAV----LPD--------LDIRYMTKICKLL-GLTALV--EVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       256 eAr~~GADAVLLIaai----L~~--------~~L~~L~~~A~~L-GLeaLV--EVH~~eELerAl~l~ga~iIGIN  316 (355)
                      .+..+|+|+|.+-...    ++.        .++..+.++.... ++-.+.  -|.|.+++++++.  |++.|+|-
T Consensus       152 ~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~--GaD~V~iG  225 (350)
T 3b0p_A          152 AMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK--RVDGVMLG  225 (350)
T ss_dssp             HHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT--TSSEEEEC
T ss_pred             HHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--CCCEEEEC
Confidence            5567899999875432    221        1344444555666 665554  3689999999996  79988875

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A

Probab=81.87  E-value=2.9  Score=40.61  Aligned_cols=93  Identities=10%  Similarity=0.029  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCC-HHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLP-DLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~-~~~  276 (355)
                      ...+++.+++.|...|    |+.+-.++++.+..+|+. +++||..-+-+.++++..+....| +|.|.+=+.-.+ -.+
T Consensus       222 A~~~~~~L~~~~i~~i----EeP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~  296 (394)
T 3mkc_A          222 VARLLNSIEDLELYFA----EATLQHDDLSGHAKLVEN-TRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCGGLTE  296 (394)
T ss_dssp             HHHHHHHTGGGCCSEE----ESCSCTTCHHHHHHHHHH-CSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred             HHHHHHHhhhcCCeEE----ECCCCchhHHHHHHHHhh-CCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCccccCCHHH
Confidence            4567888888886655    555667899999999986 899999999999999999998876 788777555554 456


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCH
Q 018446          277 IRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ...+..+|+..|+.+.  +|+.
T Consensus       297 ~~~ia~~A~~~gi~~~--~h~~  316 (394)
T 3mkc_A          297 LRRITEMATANNVQVM--PHNW  316 (394)
T ss_dssp             HHHHHHHHHHTTCEEC--CCCC
T ss_pred             HHHHHHHHHHcCCEEe--ecCC
Confidence            7788999999999975  6875

>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A

Probab=81.80  E-value=3.2  Score=40.35  Aligned_cols=93  Identities=13%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ...+++.+++.|...|    |+.+-..+++.+..+|+. +++||..-+-+.++++..+....| +|.|.+=+.-. +-.+
T Consensus       217 A~~~~~~L~~~~i~~i----EqP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~  291 (401)
T 3sbf_A          217 AIQFAKEVEQYKPYFI----EDILPPNQTEWLDNIRSQ-SSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITP  291 (401)
T ss_dssp             HHHHHHHHGGGCCSCE----ECSSCTTCGGGHHHHHTT-CCCCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHH
T ss_pred             HHHHHHHHHhcCCCEE----ECCCChhHHHHHHHHHhh-CCCCEEeCCccCCHHHHHHHHhcCCCCEEecCccccCCHHH
Confidence            3467788888886554    445566789999999985 899999999999999999998877 78877744444 4567


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCH
Q 018446          277 IRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ...+..+|+..|+.+.  +|+.
T Consensus       292 ~~kia~~A~~~gi~~~--~h~~  311 (401)
T 3sbf_A          292 ALKLGHLCQNFGVRIA--WHCA  311 (401)
T ss_dssp             HHHHHHHHHHHTCEEC--CCCC
T ss_pred             HHHHHHHHHHcCCEEE--ecCC
Confidence            7889999999999854  6655

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}

Probab=81.78  E-value=3.6  Score=39.65  Aligned_cols=90  Identities=14%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ..++++..++.|. .   +-|| +-  +++.+..+|+. +++||..-+-+.++.+..+....| +|.|.+=..-+ +-..
T Consensus       205 a~~~~~~l~~~~i-~---iEqP-~~--~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~  276 (378)
T 3eez_A          205 ALRVMRATEDLHV-M---FEQP-GE--TLDDIAAIRPL-HSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTR  276 (378)
T ss_dssp             HHHHHHHTGGGTC-C---EECC-SS--SHHHHHHTGGG-CCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHH
T ss_pred             HHHHHHHhccCCe-E---EecC-CC--CHHHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHH
Confidence            3456777777774 3   3344 33  89999999986 899999999999999999988877 68887744443 4567


Q ss_pred             HHHHHHHHHHcCCcEEEEeC
Q 018446          277 IRYMTKICKLLGLTALVEVH  296 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH  296 (355)
                      ...+.++|+..|+.+.+-..
T Consensus       277 ~~~ia~~A~~~g~~~~~~~~  296 (378)
T 3eez_A          277 AARMRDIALTHGIDMFVMAT  296 (378)
T ss_dssp             HHHHHHHHHHTTCEEEEECS
T ss_pred             HHHHHHHHHHcCCEEEcCCC
Confidence            78899999999999887643

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=81.65  E-value=5.2  Score=40.15  Aligned_cols=80  Identities=8%  Similarity=0.156  Sum_probs=52.2

Q ss_pred             CCCC-eecc---cccc-CHHHH-HHHHHcCCcchHHHHhcCCH--------------------HHHHHHHHHHHHc--CC
Q 018446          238 VKCP-LLCK---EFIV-DAWQI-YYARTKGADAVLLIAAVLPD--------------------LDIRYMTKICKLL--GL  289 (355)
Q Consensus       238 v~lP-VLrK---DFII-dpyQI-~eAr~~GADAVLLIaaiL~~--------------------~~L~~L~~~A~~L--GL  289 (355)
                      +++| |+.|   |+-. +-.+| ..+..+|||+|.++-.....                    ..+..+.++.+.+  .+
T Consensus       295 ~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~i  374 (443)
T 1tv5_A          295 KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQI  374 (443)
T ss_dssp             SSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCC
Confidence            4689 8777   3211 11223 34467899999887764421                    1244455666666  55


Q ss_pred             cEEE--EeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          290 TALV--EVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       290 eaLV--EVH~~eELerAl~l~ga~iIGINNR  318 (355)
                      ..+.  -|+|.+++.+++.+ ||++|+|---
T Consensus       375 PVIg~GGI~s~~DA~e~l~a-GAd~Vqigra  404 (443)
T 1tv5_A          375 PIIASGGIFSGLDALEKIEA-GASVCQLYSC  404 (443)
T ss_dssp             CEEEESSCCSHHHHHHHHHT-TEEEEEESHH
T ss_pred             cEEEECCCCCHHHHHHHHHc-CCCEEEEcHH
Confidence            5554  68999999999996 9999998644

>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*

Probab=81.52  E-value=4.8  Score=38.99  Aligned_cols=89  Identities=10%  Similarity=0.073  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHcCc--eEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CH
Q 018446          199 PVEIARSYEKGGA--ACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PD  274 (355)
Q Consensus       199 p~~iA~~Ye~~GA--aaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~  274 (355)
                      ...+++..++.|.  .-|    |+.+-.++++.+..+|+. +++||  -+-+.+++++.+....| +|.|.+=..-+ +-
T Consensus       203 A~~~~~~l~~~~i~~~~i----EqP~~~~d~~~~~~l~~~-~~iPI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGi  275 (391)
T 3gd6_A          203 AHRAIKRLTKYDLGLEMI----ESPAPRNDFDGLYQLRLK-TDYPI--SEHVWSFKQQQEMIKKDAIDIFNISPVFIGGL  275 (391)
T ss_dssp             HHHHHHHHTTCCSSCCEE----ECCSCTTCHHHHHHHHHH-CSSCE--EEECCCHHHHHHHHHHTCCSEEEECHHHHTSH
T ss_pred             HHHHHHHHHhcCCCccee----cCCCChhhHHHHHHHHHH-cCCCc--CCCCCCHHHHHHHHHcCCCCEEEECchhcCCH
Confidence            3456788888775  433    344667899999999986 89999  77888999998888776 68887744444 45


Q ss_pred             HHHHHHHHHHHHcCCcEEEE
Q 018446          275 LDIRYMTKICKLLGLTALVE  294 (355)
Q Consensus       275 ~~L~~L~~~A~~LGLeaLVE  294 (355)
                      .+...+.++|+..|+.+.+-
T Consensus       276 t~~~~ia~~A~~~gi~~~~~  295 (391)
T 3gd6_A          276 TSAKKAAYAAEVASKDVVLG  295 (391)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHHHHHHcCCEEEec
Confidence            67788999999999997653

>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A

Probab=81.28  E-value=2.3  Score=40.96  Aligned_cols=89  Identities=13%  Similarity=0.098  Sum_probs=68.0

Q ss_pred             HHHHHHHHc-CceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHHH
Q 018446          201 EIARSYEKG-GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLDI  277 (355)
Q Consensus       201 ~iA~~Ye~~-GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~L  277 (355)
                      ++++..++. |...   + |+.+-..+++.+..+|+. +++||..-+-+.++.++.+....| +|.|.+=+.-. +-.+.
T Consensus       202 ~~~~~l~~~~~i~~---i-EqP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~  276 (382)
T 2gdq_A          202 KWERYFSEWTNIGW---L-EEPLPFDQPQDYAMLRSR-LSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEF  276 (382)
T ss_dssp             TTHHHHTTCSCEEE---E-ECCSCSSCHHHHHHHHTT-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHH
T ss_pred             HHHHHHhhccCCeE---E-ECCCCcccHHHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHH
Confidence            456666666 6443   3 445666789999999985 899999999999999999988877 78777744444 34566


Q ss_pred             HHHHHHHHHcCCcEEEE
Q 018446          278 RYMTKICKLLGLTALVE  294 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVE  294 (355)
                      ..+.++|+..|+.+.+-
T Consensus       277 ~~i~~~A~~~g~~~~~~  293 (382)
T 2gdq_A          277 RDCLQLARYFGVRASAH  293 (382)
T ss_dssp             HHHHHHHHHHTCEECCC
T ss_pred             HHHHHHHHHcCCEEeec
Confidence            78899999999986654

>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A

Probab=81.20  E-value=1.5  Score=41.85  Aligned_cols=116  Identities=11%  Similarity=0.156  Sum_probs=84.4

Q ss_pred             HHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCH---HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCC
Q 018446          163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDP---VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK  239 (355)
Q Consensus       163 F~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp---~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~  239 (355)
                      ...++++...  ....+..+.          +..+++   ..+++..++.|...|    |+.+-.++++.+..+|+. ++
T Consensus       173 ~v~avR~~~g--~~~~l~vDa----------n~~~~~~~a~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~  235 (356)
T 3ro6_B          173 RLRRLHETLA--GRAVVRVDP----------NQSYDRDGLLRLDRLVQELGIEFI----EQPFPAGRTDWLRALPKA-IR  235 (356)
T ss_dssp             HHHHHHHHHT--TSSEEEEEC----------TTCCCHHHHHHHHHHHHHTTCCCE----ECCSCTTCHHHHHTSCHH-HH
T ss_pred             HHHHHHHHhC--CCCEEEEeC----------CCCCCHHHHHHHHHHHHhcCCCEE----ECCCCCCcHHHHHHHHhc-CC
Confidence            3445555431  234566664          223444   457788888886655    455667899999999875 78


Q ss_pred             CCeeccccccCHHHHHHHHHcC--CcchHHHHhcC-CHHHHHHHHHHHHHcCCcEEEEe
Q 018446          240 CPLLCKEFIVDAWQIYYARTKG--ADAVLLIAAVL-PDLDIRYMTKICKLLGLTALVEV  295 (355)
Q Consensus       240 lPVLrKDFIIdpyQI~eAr~~G--ADAVLLIaaiL-~~~~L~~L~~~A~~LGLeaLVEV  295 (355)
                      +||..-+-+.+++++.+....|  +|.|.+=..-+ +-.+...+.++|+..|+.+.+-.
T Consensus       236 iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~  294 (356)
T 3ro6_B          236 RRIAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWGC  294 (356)
T ss_dssp             HTEEESTTCCSHHHHHHHHSSSCSCSEEEECHHHHCSHHHHHHHHHHHHHHTCEEEECC
T ss_pred             CCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcccccCCHHHHHHHHHHHHHcCCEEEecC
Confidence            9999999999999999988875  88888744433 55677889999999999987643

>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*

Probab=80.81  E-value=3.8  Score=39.59  Aligned_cols=87  Identities=13%  Similarity=0.027  Sum_probs=68.9

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhc----CCCCCeeccccccCHHHHHHHHHcC-CcchHH-HHhcCC
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA----GVKCPLLCKEFIVDAWQIYYARTKG-ADAVLL-IAAVLP  273 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a----~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLL-IaaiL~  273 (355)
                      .++++..++.|..   .+-|| +- .+++.+..+|+.    ++++||..-+ +.++.++.+....| +|.|.+ +..+ +
T Consensus       218 i~~~~~l~~~~i~---~iE~P-~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~~-G  290 (392)
T 3p3b_A          218 KEVLAALSDVNLY---WLEEA-FH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIWP-G  290 (392)
T ss_dssp             HHHHHHTTTSCEE---EEECS-SS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTTB-C
T ss_pred             HHHHHHHHhcCCC---EEecC-Cc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCcccc-C
Confidence            3456666665543   33444 44 889999999874    2789999999 99999999998888 788888 6667 8


Q ss_pred             HHHHHHHHHHHHHcCCcEEE
Q 018446          274 DLDIRYMTKICKLLGLTALV  293 (355)
Q Consensus       274 ~~~L~~L~~~A~~LGLeaLV  293 (355)
                      -.+...+.++|+..|+.+.+
T Consensus       291 it~~~~i~~~A~~~gi~~~~  310 (392)
T 3p3b_A          291 FTHWMELGEKLDAHGLRSAP  310 (392)
T ss_dssp             HHHHHHHHHHHHHTTCEECC
T ss_pred             HHHHHHHHHHHHHcCCEEEe
Confidence            88888999999999999776

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A

Probab=80.67  E-value=4.6  Score=39.93  Aligned_cols=92  Identities=11%  Similarity=0.102  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ...+++..++.|...|    |+..-..+++.+..+|+. +++||..-+-+.++++..+....| +|.|.+=+.-. +-.+
T Consensus       219 A~~~~~~Le~~~i~~i----EeP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~  293 (433)
T 3rcy_A          219 AIRLGQAIEPYSPLWY----EEPVPPDNVGAMAQVARA-VRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIWE  293 (433)
T ss_dssp             HHHHHHHHGGGCCSEE----ECCSCTTCHHHHHHHHHH-SSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHH
T ss_pred             HHHHHHHhhhcCCCEE----ECCCChhhHHHHHHHHhc-cCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHH
Confidence            3457788888886655    445566799999999986 899999999999999999998887 78887744444 3456


Q ss_pred             HHHHHHHHHHcCCcEEEEeCC
Q 018446          277 IRYMTKICKLLGLTALVEVHD  297 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~  297 (355)
                      ...+..+|+..|+.+.  +|+
T Consensus       294 ~~kia~lA~~~gv~~~--~h~  312 (433)
T 3rcy_A          294 MKKVAAMAEVYNAQMA--PHL  312 (433)
T ss_dssp             HHHHHHHHHTTTCEEC--CCC
T ss_pred             HHHHHHHHHHcCCEEE--ecC
Confidence            7788999999999854  676

>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}

Probab=80.57  E-value=4.8  Score=39.43  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~  276 (355)
                      ...+++.+++.|...|    |+.+-.++++.+..+|+. +++||..-+-+.++++..+....| +|.|.+=+.-. +-.+
T Consensus       217 A~~~~~~L~~~~i~~i----EeP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~  291 (412)
T 4e4u_A          217 AIRLAKRLEKYDPLWF----EEPVPPGQEEAIAQVAKH-TSIPIATGERLTTKYEFHKLLQAGGASILQLNVARVGGLLE  291 (412)
T ss_dssp             HHHHHHHHGGGCCSEE----ECCSCSSCHHHHHHHHHT-CSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTSHHH
T ss_pred             HHHHHHHhhhcCCcEE----ECCCChhhHHHHHHHHhh-CCCCEEecCccCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence            3457788888886554    444667899999999985 899999999999999999998887 68877744444 4567


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCH
Q 018446          277 IRYMTKICKLLGLTALVEVHDE  298 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLVEVH~~  298 (355)
                      ...+..+|+..|+.+  -+|..
T Consensus       292 ~~kia~~A~~~gi~v--~~h~~  311 (412)
T 4e4u_A          292 AKKIATLAEVHYAQI--APHLY  311 (412)
T ss_dssp             HHHHHHHHHHTTCEE--CCCCC
T ss_pred             HHHHHHHHHHcCCEE--EecCC
Confidence            788999999999985  55763

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=80.50  E-value=3.3  Score=38.39  Aligned_cols=131  Identities=12%  Similarity=0.072  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHcCceEEEEec--cCCCCC---CCHHHHHHHHhcCCCCC--eeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446          199 PVEIARSYEKGGAACLSILT--DEKYFK---GSFENLEAVRSAGVKCP--LLCKEFIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLT--D~~fF~---GS~edL~~VR~a~v~lP--VLrKDFIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      -..+++...+.|...|=+-+  .++|+.   +.++.++.+++. .++|  +|.    -..-.|..|..+|+|.|-+-.+.
T Consensus        28 k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~-~~~~v~~l~----~n~~~i~~a~~~G~~~V~i~~~~  102 (295)
T 1ydn_A           28 KIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRA-DGVRYSVLV----PNMKGYEAAAAAHADEIAVFISA  102 (295)
T ss_dssp             HHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCC-SSSEEEEEC----SSHHHHHHHHHTTCSEEEEEEES
T ss_pred             HHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhC-CCCEEEEEe----CCHHHHHHHHHCCCCEEEEEEec
Confidence            34567777777777666543  233333   234444444332 2333  333    34556677778888876553211


Q ss_pred             ----------CCH----HHHHHHHHHHHHcCCcEEEE-----------eCCHHHHHHHh----ccCCCeEEEeeCCCCCc
Q 018446          272 ----------LPD----LDIRYMTKICKLLGLTALVE-----------VHDEREMDRVL----GIEGIELIGINNRNLET  322 (355)
Q Consensus       272 ----------L~~----~~L~~L~~~A~~LGLeaLVE-----------VH~~eELerAl----~l~ga~iIGINNRdL~T  322 (355)
                                .+.    +.+.+.+++|++.|+.+-.+           -+|.+++.+..    ++ |++.|.|-+  -..
T Consensus       103 S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~-G~d~i~l~D--t~G  179 (295)
T 1ydn_A          103 SEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSL-GCHEVSLGD--TIG  179 (295)
T ss_dssp             CHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHH-TCSEEEEEE--TTS
T ss_pred             CHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhc-CCCEEEecC--CCC
Confidence                      121    34566789999999997533           35778777655    44 899998883  111


Q ss_pred             cccChhhHHhhhcccc
Q 018446          323 FEVDNSNTKKLLEGER  338 (355)
Q Consensus       323 fevDl~~t~~L~~~~~  338 (355)
                      . ..+....+++..++
T Consensus       180 ~-~~P~~~~~lv~~l~  194 (295)
T 1ydn_A          180 R-GTPDTVAAMLDAVL  194 (295)
T ss_dssp             C-CCHHHHHHHHHHHH
T ss_pred             C-cCHHHHHHHHHHHH
Confidence            1 45677777666543

>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5

Probab=80.44  E-value=3.1  Score=36.22  Aligned_cols=112  Identities=19%  Similarity=0.172  Sum_probs=64.7

Q ss_pred             CCCHHHHHHHHHHcCceEEEEeccC-CCCCCCHHHHHHHHhcCCCCCeeccccc-cCHHHHHHHHHcCCcchHHHHhcCC
Q 018446          196 DFDPVEIARSYEKGGAACLSILTDE-KYFKGSFENLEAVRSAGVKCPLLCKEFI-VDAWQIYYARTKGADAVLLIAAVLP  273 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLTD~-~fF~GS~edL~~VR~a~v~lPVLrKDFI-IdpyQI~eAr~~GADAVLLIaaiL~  273 (355)
                      +.++.++.+...+.|-.+.|+-+-. .|+.|... +       ..-|-.++..+ .-...|..|..+||..|.+.....+
T Consensus        39 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~g~~~-~-------~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~  110 (260)
T 1k77_A           39 NYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWG-L-------SALPGREHEAHADIDLALEYALALNCEQVHVMAGVVP  110 (260)
T ss_dssp             TSCHHHHHHHHHHTTCEEEEEECCCCCGGGTCSC-S-------TTCTTCHHHHHHHHHHHHHHHHHTTCSEEECCCCBCC
T ss_pred             CCCHHHHHHHHHHcCCceEEEecCCcccccccCC-C-------CCChhHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCC
Confidence            4578899999999999988876632 23222100 0       00000000000 0123456677788877765443322


Q ss_pred             ------------HHHHHHHHHHHHHcCCcEEEEeCC-----------HHHHHHHhccCCCeEEEe
Q 018446          274 ------------DLDIRYMTKICKLLGLTALVEVHD-----------EREMDRVLGIEGIELIGI  315 (355)
Q Consensus       274 ------------~~~L~~L~~~A~~LGLeaLVEVH~-----------~eELerAl~l~ga~iIGI  315 (355)
                                  -+.|.++.++|.+.|+...+|-|+           .+++.+.++.-+.+-+|+
T Consensus       111 ~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  175 (260)
T 1k77_A          111 AGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFI  175 (260)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHGGGTCEEEECCCCTTTSTTBSCCSHHHHHHHHHHHCCTTEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCccCCCcCccCCHHHHHHHHHHhCCCCEEE
Confidence                        235677888999999999999983           456666654323334555

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=80.41  E-value=2.7  Score=37.86  Aligned_cols=112  Identities=17%  Similarity=0.167  Sum_probs=64.0

Q ss_pred             HHHHHHcCceEEEEeccCC-CCCCC----HHHHHHHHhcCCCCCeeccc----cccCHHHHH----HHHHcCCcchHHHH
Q 018446          203 ARSYEKGGAACLSILTDEK-YFKGS----FENLEAVRSAGVKCPLLCKE----FIVDAWQIY----YARTKGADAVLLIA  269 (355)
Q Consensus       203 A~~Ye~~GAaaISVLTD~~-fF~GS----~edL~~VR~a~v~lPVLrKD----FIIdpyQI~----eAr~~GADAVLLIa  269 (355)
                      ++.-.+.||++|.+.-.-. .-.|.    .+++..+|++ +. |++.|=    -.+++-++.    .+..+|||+|..-.
T Consensus        76 ~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a-~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~tst  153 (225)
T 1mzh_A           76 AVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRE-TP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTST  153 (225)
T ss_dssp             HHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHT-CT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred             HHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHH-hc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence            3455578999999533211 11233    3577888886 66 776553    113443332    34556999993222


Q ss_pred             hc----CCHHHHHHHHHHHH-HcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          270 AV----LPDLDIRYMTKICK-LLGLTALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       270 ai----L~~~~L~~L~~~A~-~LGLeaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                      ..    .+.+.++.+.+... .+++-+-=-++|.+++.+.+.+ ||+.||+-.
T Consensus       154 g~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~a-GA~~iG~s~  205 (225)
T 1mzh_A          154 GFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEA-GADRIGTSS  205 (225)
T ss_dssp             SCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHT-TCSEEEESC
T ss_pred             CCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHh-CchHHHHcc
Confidence            11    12234444433221 2233333347999999999996 999999863

>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}

Probab=80.24  E-value=4.7  Score=39.19  Aligned_cols=125  Identities=17%  Similarity=0.161  Sum_probs=88.1

Q ss_pred             HHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCH---HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCC
Q 018446          163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDP---VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK  239 (355)
Q Consensus       163 F~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp---~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~  239 (355)
                      ...++++...  ....+..+.          +..+++   ..+++..++.|...|    |+.+-.++++.+..+|+. ++
T Consensus       208 ~v~avR~a~G--~~~~l~vDa----------N~~~~~~~A~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~  270 (390)
T 3ugv_A          208 TAEAVWDAVG--RDTALMVDF----------NQGLDMAEAMHRTRQIDDLGLEWI----EEPVVYDNFDGYAQLRHD-LK  270 (390)
T ss_dssp             HHHHHHHHHC--TTSEEEEEC----------TTCCCHHHHHHHHHHHTTSCCSEE----ECCSCTTCHHHHHHHHHH-CS
T ss_pred             HHHHHHHHhC--CCCEEEEEC----------CCCCCHHHHHHHHHHHHhhCCCEE----ECCCCcccHHHHHHHHHh-cC
Confidence            3445655431  234577664          233444   456777877776554    455667899999999986 89


Q ss_pred             CCeeccccccCHHHHHHHHHcC-CcchHHHHhcCC-HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhc
Q 018446          240 CPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLP-DLDIRYMTKICKLLGLTALVEVHDEREMDRVLG  306 (355)
Q Consensus       240 lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~-~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~  306 (355)
                      +||..-+-+.+++++.+....| +|.|.+=+.-++ -.+...+..+|+..|+.+.  +|+.-|.-..+.
T Consensus       271 iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~--~h~~~~a~lhl~  337 (390)
T 3ugv_A          271 TPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVSGWMRAAGVAGAWGIPMS--THLYPEVGAHVM  337 (390)
T ss_dssp             SCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHHHHHHHHHHHHHHTCCBC--CBSCHHHHHHHH
T ss_pred             CCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEe--ecCHHHHHHHHH
Confidence            9999999999999999998877 687776444443 4567788999999999965  677766554443

>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A

Probab=80.22  E-value=5.9  Score=38.21  Aligned_cols=90  Identities=11%  Similarity=0.106  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHH-hcCCHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIA-AVLPDLD  276 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIa-aiL~~~~  276 (355)
                      ...+++..++.|..-|    |+.+-.++++.+..+|+. +++||..-+-+.+.+++.+....| +|.|.+=+ .+=+-.+
T Consensus       210 A~~~~~~l~~~~i~~i----EqP~~~~d~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~  284 (382)
T 3dgb_A          210 ALRACRILGGNGIDLI----EQPISRNNRAGMVRLNAS-SPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRA  284 (382)
T ss_dssp             HHHHHHHHHTTTCCCE----ECCBCTTCHHHHHHHHHH-CSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred             HHHHHHHHhhcCcCee----eCCCCccCHHHHHHHHHh-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEEecccccCCHHH
Confidence            3456788888775433    445667899999999986 899999999999999999888765 77777633 3334567


Q ss_pred             HHHHHHHHHHcCCcEEE
Q 018446          277 IRYMTKICKLLGLTALV  293 (355)
Q Consensus       277 L~~L~~~A~~LGLeaLV  293 (355)
                      ...+.++|+..|+.+.+
T Consensus       285 ~~~i~~~A~~~gi~~~~  301 (382)
T 3dgb_A          285 TLRTAAIAEAAGIGLYG  301 (382)
T ss_dssp             HHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHcCCeEee
Confidence            78889999999999864

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=80.08  E-value=2.8  Score=39.72  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=44.0

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHH----HHHHHHhcCCCCCeec
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSAGVKCPLLC  244 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~e----dL~~VR~a~v~lPVLr  244 (355)
                      ++..||+=+-- |        ..+..++++..++.||+|+.|++ |-||..+.+    +++.|.++ +++||+-
T Consensus        80 grvpViaGvg~-s--------t~~ai~la~~A~~~Gadavlv~~-P~y~~~s~~~l~~~f~~va~a-~~lPiil  142 (314)
T 3d0c_A           80 GRATVVAGIGY-S--------VDTAIELGKSAIDSGADCVMIHQ-PVHPYITDAGAVEYYRNIIEA-LDAPSII  142 (314)
T ss_dssp             TSSEEEEEECS-S--------HHHHHHHHHHHHHTTCSEEEECC-CCCSCCCHHHHHHHHHHHHHH-SSSCEEE
T ss_pred             CCCeEEecCCc-C--------HHHHHHHHHHHHHcCCCEEEECC-CCCCCCCHHHHHHHHHHHHHh-CCCCEEE
Confidence            56789997732 2        12577899999999999999997 678888754    45577765 7888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d1vc4a_	254	c.1.2.4 (A:) Indole-3-glycerophosphate synthase, I	7e-44
d1i4na_	251	c.1.2.4 (A:) Indole-3-glycerophosphate synthase, I	1e-38
d1piia2	254	c.1.2.4 (A:1-254) Indole-3-glycerophosphate syntha	4e-35
d1a53a_	247	c.1.2.4 (A:) Indole-3-glycerophosphate synthase, I	5e-34
d1y0ea_	222	c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph	2e-09
d1yxya1	230	c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p	2e-08

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

 Score =  149 bits (378), Expect = 7e-44
 Identities = 84/240 (35%), Positives = 123/240 (51%), Gaps = 20/240 (8%)

Query: 116 IQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTG 175
           ++ + +    +L EI   +  EV       P           P    F  AL+       
Sbjct: 1   MRPDLSRVPGVLGEIARKRASEVAPYPLPEP-----------PSVPSFKEALLRPG---- 45

Query: 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS 235
             ++IAEVK+ SPS G++R + DPVE A +Y +GGA  +S+LT+   F GS  +L+ VR 
Sbjct: 46  -LSVIAEVKRQSPSEGLIR-EVDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVRE 103

Query: 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV 295
           A V  PLL K+F+VD + +  AR  GA A LLI A+L +L   Y+ +  + LGL ALVEV
Sbjct: 104 A-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYL-EEARRLGLEALVEV 161

Query: 296 HDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGPFTR 355
           H ERE++      G E++GINNR+L T  ++     +L    R        +  SG   +
Sbjct: 162 HTERELEIA-LEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRK 220

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

 Score =  136 bits (342), Expect = 1e-38
 Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 21/231 (9%)

Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
           L EIV  K  ++ ++     +   +N          F+  L    +      +IAE KKA
Sbjct: 3   LWEIVEAKKKDILEIDGENLIVQRRN--------HRFLEVLSGKER----VKIIAEFKKA 50

Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
           SPS G +  D    +  R Y++   A  SILT++ YFKG    + A R+     P+L K+
Sbjct: 51  SPSAGDINADASLEDFIRMYDELADAI-SILTEKHYFKGDPAFVRAARNL-TCRPILAKD 108

Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
           F +D  Q+  A + GADA+L+IA +L    I+ + +  + LG+ +LVEVH   ++++V  
Sbjct: 109 FYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFS 168

Query: 307 IEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV--SGPFTR 355
           +   ++IGIN R+L+TFE+  +   +LL      ++    ++V  SG    
Sbjct: 169 VIRPKIIGINTRDLDTFEIKKNVLWELL-----PLVPDDTVVVAESGIKDP 214

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} Length = 254

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

 Score =  127 bits (319), Expect = 4e-35
 Identities = 86/234 (36%), Positives = 129/234 (55%), Gaps = 17/234 (7%)

Query: 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEV 183
           + +L +IV  K + V   KQ++PL+  +N +   P  R F  AL     +    A I E 
Sbjct: 2   QTVLAKIVADKAIWVEARKQQQPLASFQNEV--QPSTRHFYDAL-----QGARTAFILEC 54

Query: 184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
           KKASPS+G++R+DFDP  I  +  K  A+ +S+LTDEKYF+GSF  L  V       P+L
Sbjct: 55  KKASPSKGVIRDDFDPARI-AAIYKHYASAISVLTDEKYFQGSFNFLPIVSQ-IAPQPIL 112

Query: 244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
           CK+FI+D +QIY AR   ADA LL+ +VL D   R +  +   L +  L EV +E E +R
Sbjct: 113 CKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQER 172

Query: 304 VLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV--SGPFTR 355
            + +   +++GINNR+L    +D + T++L        +     ++  SG  T 
Sbjct: 173 AIALG-AKVVGINNRDLRDLSIDLNRTRELA-----PKLGHNVTVISESGINTY 220

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 247

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  123 bits (310), Expect = 5e-34
 Identities = 85/235 (36%), Positives = 123/235 (52%), Gaps = 22/235 (9%)

Query: 123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAE 182
           PR  L+   W KDV   QL  RRP            P       ++  N +  + A+IAE
Sbjct: 1   PR-YLKG--WLKDVV--QLSLRRPSFRASRQR----PIISLNERILEFN-KRNITAIIAE 50

Query: 183 VKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL 242
            K+ SPS      + DP+E ++  E+  A  LSILT+EKYF GS+E L  + S  V  P+
Sbjct: 51  YKRKSPSGLD--VERDPIEYSKFMERY-AVGLSILTEEKYFNGSYETLRKIAS-SVSIPI 106

Query: 243 LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
           L K+FIV   QI  A   GAD VLLI  +L + ++  + +  +  G+  L+E++DE ++D
Sbjct: 107 LMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD 166

Query: 303 RVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIV--SGPFTR 355
             L I G   IGIN+R+LET E++  N +KL+      +I    + V  SG   R
Sbjct: 167 IALRI-GARFIGINSRDLETLEINKENQRKLI-----SMIPSNVVKVAESGISER 215

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 22/169 (13%)

Query: 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-G 237
           LI   +  +     L   F   ++A +  +GGA  +           + E++ A++    
Sbjct: 7   LIVSCQ--ALPDEPLHSSFIMSKMALAAYEGGAVGIRA--------NTKEDILAIKETVD 56

Query: 238 VKCPLLCKEFIVDAWQIYYARTK--------GADAVLLIAAVLP--DLDIRYMTKICKLL 287
           +    + K     +     A +K          + + L A +       +  +    +  
Sbjct: 57  LPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTH 116

Query: 288 GLTALVEVHDEREMDRVLGIE-GIELIGINNRNLETFEVDNSNTKKLLE 335
                +        +       G + IG       ++       +   +
Sbjct: 117 APNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQ 165

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 16/164 (9%), Positives = 43/164 (26%), Gaps = 11/164 (6%)

Query: 179 LIAEVKKASPSRGILREDFDPV-EIARSYEKGGAACLSI--LTDEKYFKGSFENLEAVRS 235
           +I   + A P   +  E    +  +A++ ++ GA  +    + D K  +   +       
Sbjct: 15  IIVSCQ-ALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGII 73

Query: 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLL-----GLT 290
                P           ++          + +        D   +    + +        
Sbjct: 74  K-KDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQL 132

Query: 291 ALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLL 334
            + ++    E        GI+ +G        +    +     L
Sbjct: 133 LMADISTFDEGLVAHQA-GIDFVGTTLSGYTPYSRQEAGPDVAL 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	100.0
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	100.0
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	100.0
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	100.0
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.13
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.69
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	97.15
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	96.65
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	95.37
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	94.81
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	94.44
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	94.15
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	93.87
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	93.86
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	93.81
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	93.54
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	92.42
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	92.4
d1vlia2	295	Spore coat polysaccharide biosynthesis protein Sps	91.54
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	91.51
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	91.33
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	91.22
d2zdra2	280	Capsule biosynthesis protein SiaC, N-terminal doma	91.21
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	90.87
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	90.6
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	88.28
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	88.02
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	87.94
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	87.63
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	86.5
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	85.02
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	84.84
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	84.27
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	84.19
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	83.57
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	82.61
d1zcca1	240	Glycerophosphodiester phosphodiesterase UgpQ {Agro	81.91

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-71  Score=520.10  Aligned_cols=207  Identities=41%  Similarity=0.656  Sum_probs=196.6

Q ss_pred             cccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHH
Q 018446          123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEI  202 (355)
Q Consensus       123 p~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~i  202 (355)
                      |.|||++|+++|++||+++|++.|+.+|++.+  .|++++|.++|++     ++++|||||||+|||+|.|++++||.++
T Consensus         1 M~~iL~~Ii~~K~~ev~~~k~~~~l~~l~~~~--~~~~~~f~~aL~~-----~~~~iIAEiKraSPSkG~i~~~~~p~~~   73 (254)
T d1piia2           1 MQTVLAKIVADKAIWVEARKQQQPLASFQNEV--QPSTRHFYDALQG-----ARTAFILECKKASPSKGVIRDDFDPARI   73 (254)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHSCGGGTGGGC--CCCCSCHHHHHCS-----SSCEEEEEECSEETTTEESCSSCCHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHhcCCHHHHHHhc--cccccCHHHHHhc-----CCCceehhhhhcccchhhhcccchhHHH
Confidence            57999999999999999999999999998865  3678999999975     4689999999999999999999999998


Q ss_pred             HHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHH
Q 018446          203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTK  282 (355)
Q Consensus       203 A~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~  282 (355)
                      |+ |+++||+|||||||++||+||++||..||++ +++||||||||||||||||||.+||||||||+++|++++|++|++
T Consensus        74 a~-~~~~gA~aiSVLTe~~~F~Gs~~~l~~v~~~-~~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L~~~~l~~l~~  151 (254)
T d1piia2          74 AA-IYKHYASAISVLTDEKYFQGSFNFLPIVSQI-APQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAA  151 (254)
T ss_dssp             HH-HHTTTCSEEEEECCSTTTCCCTTHHHHHHHH-CCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCCHHHHHHHHH
T ss_pred             HH-HHHhccCceEEecccccCCCCHHHHHHHHhc-cccccchhcccCcHHHHHHHHhhccchhhhhHhhhcccHHHHHHH
Confidence            87 7789999999999999999999999999997 999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccc
Q 018446          283 ICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERG  339 (355)
Q Consensus       283 ~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~  339 (355)
                      +|++|||++||||||++|+++|+++ |+++||||||||+||++|+++|.+|++.+|.
T Consensus       152 ~a~~lgl~~LVEvh~~~El~~a~~~-~a~iIGINnRnL~tf~vd~~~t~~L~~~ip~  207 (254)
T d1piia2         152 VAHSLEMGVLTEVSNEEEQERAIAL-GAKVVGINNRDLRDLSIDLNRTRELAPKLGH  207 (254)
T ss_dssp             HHHHTTCEEEEEECSHHHHHHHHHT-TCSEEEEESEETTTTEECTHHHHHHHHHHCT
T ss_pred             HHHHHhhhHHHhhccHHHHHHHHhh-cccccCccccchhhhhhhhHHHHHHHHhCCC
Confidence            9999999999999999999999997 9999999999999999999999999876543

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.4e-66  Score=484.57  Aligned_cols=207  Identities=32%  Similarity=0.478  Sum_probs=187.4

Q ss_pred             HHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHH
Q 018446          126 ILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARS  205 (355)
Q Consensus       126 iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~  205 (355)
                      -|++|+++|++++...+...++        ...+.++|.++|++.    ++++|||||||+|||+|.|++++||.++|+.
T Consensus         2 ~L~~Iv~~Kk~~~~~~~~~~~~--------~~~~~~~f~~al~~~----~~~~iIAEiKr~SPS~G~i~~~~d~~~~a~~   69 (251)
T d1i4na_           2 RLWEIVEAKKKDILEIDGENLI--------VQRRNHRFLEVLSGK----ERVKIIAEFKKASPSAGDINADASLEDFIRM   69 (251)
T ss_dssp             CHHHHHHHHHHHGGGCCGGGCC--------CCCCCCHHHHHHCCS----SSCEEEEEECSBCSSSCBSCTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhh--------hccccchHHHHHhcC----CCCeEEEeeecCCCCCCCCcCCccHHHHHHH
Confidence            3899999999999876665432        234678999999643    5689999999999999999999999999999


Q ss_pred             HHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHH
Q 018446          206 YEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICK  285 (355)
Q Consensus       206 Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~  285 (355)
                      |+ +||+|||||||++||+||++||..||++ +++||||||||||||||+||+.+||||||||+++|++++|++|+++|+
T Consensus        70 ye-~GA~aiSVLTd~~~F~Gs~~~l~~vr~~-~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~  147 (251)
T d1i4na_          70 YD-ELADAISILTEKHYFKGDPAFVRAARNL-TCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAE  147 (251)
T ss_dssp             HH-HHCSEEEEECCCSSSCCCTHHHHHHHTT-CCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred             Hh-cCCcceEEecccCCCCCCHHHHHHHhhc-ccCchhhhhhhhCHHHHHHHHhhccceEEeecccccHHHHHHHHHHHH
Confidence            96 5999999999999999999999999986 999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccccccccCceEEecc
Q 018446          286 LLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGP  352 (355)
Q Consensus       286 ~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~~~l~~~~i~~V~~  352 (355)
                      +|||++||||||++|+++|+...++++||||||||+||++|+++|.+|++.+|     +. +++|.|
T Consensus       148 ~lgle~LvEvh~~~El~~al~~~~a~iiGINnRdL~t~~vd~~~~~~L~~~ip-----~~-~~~IaE  208 (251)
T d1i4na_         148 ELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVP-----DD-TVVVAE  208 (251)
T ss_dssp             TTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSC-----TT-SEEEEE
T ss_pred             HhCCeeecccCCHHHHHHHhcccccceeeeeecchhccchhhhHHHHHHhhCC-----CC-CEEEEc
Confidence            99999999999999999999654799999999999999999999999987654     33 356665

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.1e-65  Score=478.72  Aligned_cols=198  Identities=40%  Similarity=0.588  Sum_probs=181.7

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCC
Q 018446          119 EGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFD  198 (355)
Q Consensus       119 ~~~~p~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~D  198 (355)
                      .-....+||++|+++|+.|++..+.           ...++.++|.++|.+.     +++|||||||+|||+|.|+ ++|
T Consensus         4 ~~~~~~~iL~~I~~~k~~e~~~~~~-----------~~~~~~~~f~~al~~~-----~~~vIAEiKr~SPS~G~i~-~~d   66 (254)
T d1vc4a_           4 DLSRVPGVLGEIARKRASEVAPYPL-----------PEPPSVPSFKEALLRP-----GLSVIAEVKRQSPSEGLIR-EVD   66 (254)
T ss_dssp             CCTTCCHHHHHHHHHHHHTCCCCCC-----------CCCCCCCCHHHHHTSS-----SCEEEEEECSCCTTTCCCC-SCC
T ss_pred             cccccchHHHHHHHHHHHHHHhccc-----------cCCCCCccHHHHHhcC-----CCeEEEEeeecCCCCCccc-cCC
Confidence            3455679999999999998864322           2346788999999753     4799999999999999998 589


Q ss_pred             HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446          199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR  278 (355)
Q Consensus       199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~  278 (355)
                      |.++|+.|+++||+|||||||++||+||++||..||++ +++||||||||+|||||+|||.+||||||||+++|++ ++.
T Consensus        67 p~~~A~~y~~~GA~aiSVLTe~~~F~Gs~~dl~~v~~~-~~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall~~-~l~  144 (254)
T d1vc4a_          67 PVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREA-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGE-LTG  144 (254)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHH-CCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHGG-GHH
T ss_pred             HHHHHHHHHhcCCceEEEEcCcccccccHHHHHHHHHH-cCCCcccCCccccHHHHHHHHhccchHHHHHHHHHHH-HHH
Confidence            99999999999999999999999999999999999996 9999999999999999999999999999999999865 789


Q ss_pred             HHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcc
Q 018446          279 YMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEG  336 (355)
Q Consensus       279 ~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~  336 (355)
                      +|+++|+++||++||||||++|+++|+++ |+++||||||||+||++|+++|.+|.+.
T Consensus       145 ~l~~~A~~lgl~~LVEvh~~~El~~a~~~-~a~iIGINnRdL~t~~vd~~~~~~l~~~  201 (254)
T d1vc4a_         145 AYLEEARRLGLEALVEVHTERELEIALEA-GAEVLGINNRDLATLHINLETAPRLGRL  201 (254)
T ss_dssp             HHHHHHHHHTCEEEEEECSHHHHHHHHHH-TCSEEEEESBCTTTCCBCTTHHHHHHHH
T ss_pred             HHHHHHHHhCCceEEEeccHHHHhhhhcC-CCCEEEEeccchhhhhcchHHHHHhhhc
Confidence            99999999999999999999999999998 9999999999999999999999999765

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=3.6e-61  Score=450.28  Aligned_cols=183  Identities=37%  Similarity=0.596  Sum_probs=167.6

Q ss_pred             CCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcC
Q 018446          158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAG  237 (355)
Q Consensus       158 pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~  237 (355)
                      .|..+|.++|.+.. .+++++|||||||+|||+|.++  +||.++|+ |.++||+|||||||++||+||++||..+|++ 
T Consensus        27 ~p~~~l~~~i~~~~-~~~~~~iIaEiKr~SPS~g~i~--~d~~~~a~-~~~~gA~aiSVLTd~~~F~Gs~~dl~~v~~~-  101 (247)
T d1a53a_          27 RPIISLNERILEFN-KRNITAIIAEYKRKSPSGLDVE--RDPIEYSK-FMERYAVGLSILTEEKYFNGSYETLRKIASS-  101 (247)
T ss_dssp             SCCCCHHHHHHHHH-HTTCCCEEEEECSBCTTSCBCC--CCHHHHHH-HHTTTCSEEEEECCCTTTCCCHHHHHHHHHH-
T ss_pred             CCccCHHHHHHHHH-hcCCCeEEeeEecCCCCCCccc--cCHHHHHH-HHHhCCCeEEEecCccccccchHHHHHHHhc-
Confidence            46678999887754 3477899999999999999995  58999996 6678999999999999999999999999996 


Q ss_pred             CCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          238 VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       238 v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                      +++||||||||||||||+||+.+||||||||+++|++++|++|+++|++|||++||||||++|+++|+.+ |+++|||||
T Consensus       102 ~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~-~a~iIGINn  180 (247)
T d1a53a_         102 VSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALRI-GARFIGINS  180 (247)
T ss_dssp             CCSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHT-TCSEEEEES
T ss_pred             cccceeecccccChHHHHHHHHhhcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHhC-CCCeEeeec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997 999999999


Q ss_pred             CCCCccccChhhHHhhhccccccccccCceEEecc
Q 018446          318 RNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGP  352 (355)
Q Consensus       318 RdL~TfevDl~~t~~L~~~~~~~~l~~~~i~~V~~  352 (355)
                      |||+||++|+++|.+|.+.+|     + ++++|.|
T Consensus       181 RnL~t~~vd~~~~~~L~~~ip-----~-~~~~IaE  209 (247)
T d1a53a_         181 RDLETLEINKENQRKLISMIP-----S-NVVKVAE  209 (247)
T ss_dssp             BCTTTCCBCHHHHHHHHHHSC-----T-TSEEEEE
T ss_pred             cChhhhhhhhhHHHHHHhhCC-----C-CCeEEEe
Confidence            999999999999999987644     3 3366665

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.13  E-value=5.6e-11  Score=103.32  Aligned_cols=139  Identities=10%  Similarity=0.113  Sum_probs=106.7

Q ss_pred             EEeEeeecCCCCCCCCCCCCH-HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc----------cc
Q 018446          179 LIAEVKKASPSRGILREDFDP-VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK----------EF  247 (355)
Q Consensus       179 VIAEvKRaSPSkG~I~~~~Dp-~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK----------DF  247 (355)
                      |.++....+|..   ..+... .++|++++++||.||++        ++.+++..+|+. ++.|++..          ++
T Consensus        17 vs~q~~~~~p~~---~~~~~~v~~~A~a~~~~Ga~~i~~--------~~~~~~~~ir~~-~~~~~~~~~~~~~~~~~~~~   84 (230)
T d1yxya1          17 VSCQALPGEPLY---SETGGIMPLMAKAAQEAGAVGIRA--------NSVRDIKEIQAI-TDLPIIGIIKKDYPPQEPFI   84 (230)
T ss_dssp             EECCCCTTSTTC---CTTCCSHHHHHHHHHHHTCSEEEE--------ESHHHHHHHHTT-CCSCEEEECBCCCTTSCCCB
T ss_pred             EEEecCCCCccc---CCChHHHHHHHHHHHHCCCeEEEe--------cChhhHHHHHhh-hhcchhhhhcccCCcceeee
Confidence            334445555543   333333 47899999999999999        467899999985 88887644          45


Q ss_pred             ccCHHHHHHHHHcCCcchHHHHhcCCHH---HHHHHHHHHHHc--CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCc
Q 018446          248 IVDAWQIYYARTKGADAVLLIAAVLPDL---DIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLET  322 (355)
Q Consensus       248 IIdpyQI~eAr~~GADAVLLIaaiL~~~---~L~~L~~~A~~L--GLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~T  322 (355)
                      ..+.++...+...|||.+.++...+...   ++.++++.+...  |+..+.++||.+|.+++.++ |+++|+++||+..+
T Consensus        85 ~~~~~~~~~~~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~-Gad~i~~~~~~~~~  163 (230)
T d1yxya1          85 TATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQA-GIDFVGTTLSGYTP  163 (230)
T ss_dssp             SCSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT-TCSEEECTTTTSST
T ss_pred             chhHHHHHHHHhcCCCEEEEecccccccchhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhc-CCCEEEeecccccc
Confidence            5667899999999999999988776533   445566655553  78888999999999999997 99999999999988


Q ss_pred             cccChhhH
Q 018446          323 FEVDNSNT  330 (355)
Q Consensus       323 fevDl~~t  330 (355)
                      +......+
T Consensus       164 ~~~~~~~~  171 (230)
T d1yxya1         164 YSRQEAGP  171 (230)
T ss_dssp             TSCCSSSC
T ss_pred             cccccchH
Confidence            77665543

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.69  E-value=1.8e-08  Score=86.21  Aligned_cols=140  Identities=14%  Similarity=0.181  Sum_probs=103.9

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCe--eccccccC-----
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL--LCKEFIVD-----  250 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPV--LrKDFIId-----  250 (355)
                      ++|.+++.  |..+.+....-..++|+++..+||.+|++        ++.+++..+|+. .+.|+  +.|++..+     
T Consensus         6 glivs~Q~--~~~~Pm~~~~~~a~~A~aa~~~Ga~~i~~--------~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~   74 (222)
T d1y0ea_           6 GLIVSCQA--LPDEPLHSSFIMSKMALAAYEGGAVGIRA--------NTKEDILAIKET-VDLPVIGIVKRDYDHSDVFI   74 (222)
T ss_dssp             EEEEECCC--CTTSTTCCHHHHHHHHHHHHHHTCSEEEE--------ESHHHHHHHHHH-CCSCEEEECBCCCTTCCCCB
T ss_pred             CeEEEEec--CCCCCCCCcHHHHHHHHHHHHCCCeEEec--------CCHHHHHHHHHh-cCCccceeeccCCcchHHhh
Confidence            68888843  33332322112257899999999999988        467899999986 77776  55555433     


Q ss_pred             ---HHHHHHHHHcCCcchHHHHhcCC--HHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCcc
Q 018446          251 ---AWQIYYARTKGADAVLLIAAVLP--DLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLETF  323 (355)
Q Consensus       251 ---pyQI~eAr~~GADAVLLIaaiL~--~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~Tf  323 (355)
                         ..+..++...|||.|++......  .+++.+.++++...++..+|  .+++.+|..++.+. |++.|+++++...+.
T Consensus        75 ~~~~~~~~~~~~agad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~-g~d~i~~~~~~~~~~  153 (222)
T d1y0ea_          75 TATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARL-GFDYIGTTLHGYTSY  153 (222)
T ss_dssp             SCSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-TCSEEECTTTTSSTT
T ss_pred             cccHHHHHhHHHcCCCEEEeeccccccccchHHHHHHHHHHhCCceEEeecCCCHHHHHHHHHc-CCCeEEEeccCCccc
Confidence               22455566689999887665543  45788999999999988877  78999999999986 999999999988887


Q ss_pred             ccChhh
Q 018446          324 EVDNSN  329 (355)
Q Consensus       324 evDl~~  329 (355)
                      ..+...
T Consensus       154 ~~~~~~  159 (222)
T d1y0ea_         154 TQGQLL  159 (222)
T ss_dssp             STTCCT
T ss_pred             ccCccc
Confidence            776544

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.15  E-value=0.00039  Score=61.33  Aligned_cols=115  Identities=19%  Similarity=0.216  Sum_probs=95.2

Q ss_pred             cCCCCCCCCCCC-CHHHHHHHHHHcCceEEEE-eccCCC---CCCCHHHHHHHHhcCCCCCeeccccccCHH-HHHHHHH
Q 018446          186 ASPSRGILREDF-DPVEIARSYEKGGAACLSI-LTDEKY---FKGSFENLEAVRSAGVKCPLLCKEFIVDAW-QIYYART  259 (355)
Q Consensus       186 aSPSkG~I~~~~-Dp~~iA~~Ye~~GAaaISV-LTD~~f---F~GS~edL~~VR~a~v~lPVLrKDFIIdpy-QI~eAr~  259 (355)
                      -|||  +++.++ +..+..+.++++|++.|.| ++|.+|   |.-+++.++.+|+. +++|+-+.=.+.+|. .|.+...
T Consensus         4 IspS--il~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~~~i~~i~~~-t~~~~dvHLMv~~P~~~i~~~~~   80 (217)
T d2flia1           4 IAPS--ILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKH-SKLVFDCHLMVVDPERYVEAFAQ   80 (217)
T ss_dssp             EEEB--GGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTT-CCSEEEEEEESSSGGGGHHHHHH
T ss_pred             EEee--hhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCccccCHHHHHHHHhc-CCCceEeEEEecCHHHHHHHHHH
Confidence            4787  567665 7778889999999999999 999999   88899999999985 888877665666665 6777777


Q ss_pred             cCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHh
Q 018446          260 KGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL  305 (355)
Q Consensus       260 ~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl  305 (355)
                      +|||.|.+-+-...  ++.++++.+++.|+.+=+-++-..+++...
T Consensus        81 ~ga~~i~~H~E~~~--~~~~~i~~i~~~g~~~Gial~p~T~~~~~~  124 (217)
T d2flia1          81 AGADIMTIHTESTR--HIHGALQKIKAAGMKAGVVINPGTPATALE  124 (217)
T ss_dssp             HTCSEEEEEGGGCS--CHHHHHHHHHHTTSEEEEEECTTSCGGGGG
T ss_pred             cCCcEEEecccccc--CHHHHHHHHHhcCCeEEEEecCCcchhHHH
Confidence            99999999988876  578899999999999999998876655543

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=96.65  E-value=0.0014  Score=57.46  Aligned_cols=137  Identities=22%  Similarity=0.264  Sum_probs=98.9

Q ss_pred             CceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHc-CceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecccccc-----
Q 018446          176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKG-GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV-----  249 (355)
Q Consensus       176 ~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~-GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFII-----  249 (355)
                      +|-||+-.|=-....|     -+..++++.+++. ....+.|..-|.|+     +|..+++. .++++...|+-.     
T Consensus         3 ~p~ii~N~K~y~~~~g-----~~~~~la~~~~~~~~~~~~~v~iaP~~~-----~l~~~~~~-~~i~v~aQn~~~~~~ga   71 (226)
T d1w0ma_           3 LPILIINFKAYGEAAG-----KRAVELAKAAERAARELGVNIVVAPNHL-----ELGLVSQS-VDIPVYAQGADVEAGGA   71 (226)
T ss_dssp             SSEEEEECTBCGGGST-----HHHHHHHHHHHHHHHHHTCEEEEECCGG-----GHHHHHTT-CSSCBEESCCSBSSCSS
T ss_pred             CCEEEEEeCCCcCchh-----HHHHHHHHHHHhcccccCCEEEEeCChH-----hHHHHhhc-ccceecccccccccccc
Confidence            4678888885433322     2456788777652 12234455567665     67778874 789999999832     


Q ss_pred             --CHHHHHHHHHcCCcchHHHHhc--CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446          250 --DAWQIYYARTKGADAVLLIAAV--LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE  324 (355)
Q Consensus       250 --dpyQI~eAr~~GADAVLLIaai--L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe  324 (355)
                        ..+.....+..|++.+++--+=  ....++.++++.|.+.||+++|.|++.+|..++..+ +..+|++.+...-...
T Consensus        72 ~TG~is~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~gl~~ivcvge~~~~~~~~~~-~~~iIayep~waIGtg  149 (226)
T d1w0ma_          72 HTAHVSLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAPDPRTSLAAAAL-GPHAVAVEPPELIGTG  149 (226)
T ss_dssp             CTTCCBHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-CCSEEEECCGGGTTTS
T ss_pred             cceeeeHhhhcccccceEEeechhhhhhccchHHHHHHHHHcCCEEEEecCchHHhhhhhcc-ccceeeecchhhccCC
Confidence              2345677788899999874421  334578899999999999999999999999999987 8899999998764443

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.37  E-value=0.041  Score=49.27  Aligned_cols=116  Identities=27%  Similarity=0.312  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCC----------CHHH----HHHHHhcCCCCCeecc---ccccCHHHHHH-HHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKG----------SFEN----LEAVRSAGVKCPLLCK---EFIVDAWQIYY-ART  259 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G----------S~ed----L~~VR~a~v~lPVLrK---DFIIdpyQI~e-Ar~  259 (355)
                      |..+.|+..+..||++|-+..--....+          +.+.    +..+|++ +++||+.|   |+. +.-.|.+ +..
T Consensus       117 d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~-~~~pv~vKl~~~~~-~~~~i~~~~~~  194 (312)
T d1gtea2         117 DWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQA-VQIPFFAKLTPNVT-DIVSIARAAKE  194 (312)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHH-CSSCEEEEECSCSS-CHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhc-cCCceeecccccch-hHHHHHHHHHH
Confidence            5667888888999999999764322221          2333    4556775 89999998   553 5556554 558


Q ss_pred             cCCcchHHHHhcC-------------------------------CHHHHHHHHHHHHHc-CCcEEE--EeCCHHHHHHHh
Q 018446          260 KGADAVLLIAAVL-------------------------------PDLDIRYMTKICKLL-GLTALV--EVHDEREMDRVL  305 (355)
Q Consensus       260 ~GADAVLLIaaiL-------------------------------~~~~L~~L~~~A~~L-GLeaLV--EVH~~eELerAl  305 (355)
                      +|+|+|.++-.+-                               .+.-|+.+..+++.+ ++..+-  =|+|.+|+.+.+
T Consensus       195 ~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l  274 (312)
T d1gtea2         195 GGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFL  274 (312)
T ss_dssp             HTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHH
T ss_pred             hcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHH
Confidence            9999998764321                               122355555556666 343332  288999999999


Q ss_pred             ccCCCeEEEee
Q 018446          306 GIEGIELIGIN  316 (355)
Q Consensus       306 ~l~ga~iIGIN  316 (355)
                      .+ ||+.|+|-
T Consensus       275 ~a-GA~~Vqv~  284 (312)
T d1gtea2         275 HS-GASVLQVC  284 (312)
T ss_dssp             HT-TCSEEEES
T ss_pred             Hc-CCCeeEEC
Confidence            87 99999983

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=94.81  E-value=0.033  Score=50.40  Aligned_cols=74  Identities=28%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCC---CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~---GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      -||+ +|+..++.|++|+--|--|---+   -+..+|+.+++. .++||+-.==|=.|-|..+|-++||||||+..++-
T Consensus       134 ~D~v-~ak~Le~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~~~-~~vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA  210 (251)
T d1xm3a_         134 DDVV-LARKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVS  210 (251)
T ss_dssp             SCHH-HHHHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             CCHH-HHHHHHHcCChhHHHhhhhhhcCCCcCChHHHHHHHhc-CCccEEEecCCCCHHHHHHHHHccCCEEEechhhh
Confidence            3786 99999999999999887765221   137899999986 89999988888899999999999999999966553

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.44  E-value=0.038  Score=48.02  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=81.0

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI  277 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L  277 (355)
                      +...++++..++|..+|=|--..   .+.++-++.+++....--++===-|+++-|+.+|..+||+-++  .--++    
T Consensus        22 ~a~~~~~al~~~Gi~~iEitlr~---p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fiv--sP~~~----   92 (202)
T d1wa3a1          22 EAKEKALAVFEGGVHLIEITFTV---PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIV--SPHLD----   92 (202)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETTS---TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEE--CSSCC----
T ss_pred             HHHHHHHHHHHcCCCEEEEecCC---ccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEe--CCCCc----
Confidence            56789999999999999863322   3556777766542011112222345899999999999999874  22333    


Q ss_pred             HHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          278 RYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      .+++++|++.|+..+-=|-|..|+..|++. |++++-+
T Consensus        93 ~~v~~~~~~~~i~~iPGv~TpsEi~~A~~~-G~~~lK~  129 (202)
T d1wa3a1          93 EEISQFCKEKGVFYMPGVMTPTELVKAMKL-GHTILKL  129 (202)
T ss_dssp             HHHHHHHHHHTCEEECEECSHHHHHHHHHT-TCCEEEE
T ss_pred             HHHHHHHHhcCCceeCCcCcHHHHHHHHHC-CCCEEEe
Confidence            478999999999999999999999999997 9998866

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.15  E-value=0.089  Score=47.26  Aligned_cols=73  Identities=26%  Similarity=0.234  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCC---CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYF---KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF---~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      ||+ +|+.++..|++++--+..|---   -=+...|+.+++. .++||++.==|=.|-+..+|-++|||+||+.-+|-
T Consensus       137 D~v-~ak~le~~Gc~~vMplgsPIGsg~Gi~n~~~l~~i~~~-~~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa  212 (243)
T d1wv2a_         137 DPI-IARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIA  212 (243)
T ss_dssp             CHH-HHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             CHH-HHhHHHHcCceeeeecccccccccccccHHHHHhcccc-CCcceEeecccCCHHHHHHHHHccCCEEEechHhh
Confidence            776 9999999999999999888421   1246788888875 89999999999999999999999999999966654

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=93.87  E-value=0.12  Score=46.02  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=84.0

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCC----------CCCCCHHHHHHHHhcCCCCCeecccc--ccCHHHHHHHHHcCCcch
Q 018446          198 DPVEIARSYEKGGAACLSILTDEK----------YFKGSFENLEAVRSAGVKCPLLCKEF--IVDAWQIYYARTKGADAV  265 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~----------fF~GS~edL~~VR~a~v~lPVLrKDF--IIdpyQI~eAr~~GADAV  265 (355)
                      ....+.+.-++.|+.++-+-.+..          ++....++++.+|+. .+.|++.|-.  +.++.-...+..+|||+|
T Consensus       108 ~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~vivk~v~~~~~~~~a~~~~~~GaD~i  186 (329)
T d1p0ka_         108 TAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSR-VSVPVIVKEVGFGMSKASAGKLYEAGAAAV  186 (329)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHH-CSSCEEEEEESSCCCHHHHHHHHHHTCSEE
T ss_pred             hHHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHH-cCCCcEEEecCCcchHHHHHHHHhcCCCEE
Confidence            345556666777888887766543          366778999999986 8999999875  478888888999999999


Q ss_pred             HHHHh-------c--------------CCHHHHHHHHHHHHHc-CCcEEE--EeCCHHHHHHHhccCCCeEEEeeC
Q 018446          266 LLIAA-------V--------------LPDLDIRYMTKICKLL-GLTALV--EVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       266 LLIaa-------i--------------L~~~~L~~L~~~A~~L-GLeaLV--EVH~~eELerAl~l~ga~iIGINN  317 (355)
                      .+.-.       +              -....+..+.+..... ++..++  -|++-.|+-+|+.+ ||+.++|=.
T Consensus       187 ~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~Dv~KAlal-GAdaV~iGr  261 (329)
T d1p0ka_         187 DIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIAL-GASCTGMAG  261 (329)
T ss_dssp             EEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT-TCSEEEECH
T ss_pred             EEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHHHHHHHHc-CCCchhccH
Confidence            87210       0              0011233444333322 677777  79999999999998 999999854

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=93.86  E-value=0.3  Score=42.54  Aligned_cols=120  Identities=18%  Similarity=0.291  Sum_probs=91.0

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA  257 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA  257 (355)
                      .+|+=+.-.++.        +...++++..++|..+|-|--..   .+.++-+..+++...++ ++===-|++.-|+..|
T Consensus        15 ~iipvlr~~~~~--------~~~~~~~al~~~Gi~~iEitl~~---~~a~~~I~~l~~~~p~~-~vGaGTV~~~~~~~~a   82 (212)
T d1vhca_          15 KIVPVIALDNAD--------DILPLADTLAKNGLSVAEITFRS---EAAADAIRLLRANRPDF-LIAAGTVLTAEQVVLA   82 (212)
T ss_dssp             CEEEEECCSSGG--------GHHHHHHHHHHTTCCEEEEETTS---TTHHHHHHHHHHHCTTC-EEEEESCCSHHHHHHH
T ss_pred             CEEEEEeCCCHH--------HHHHHHHHHHHCCCCEEEEeCCC---hhHHHHHHHHHhcCCCc-eEeeeecccHHHHHHH
Confidence            366666444332        67899999999999999986543   36788888887642221 2223335799999999


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEee
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGIN  316 (355)
                      ..+||+-++--  .++    .+++++|++.|+-.+=-|-|..|+..|++. |++++=+-
T Consensus        83 ~~aGa~FivSP--~~~----~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~-G~~~vK~F  134 (212)
T d1vhca_          83 KSSGADFVVTP--GLN----PKIVKLCQDLNFPITPGVNNPMAIEIALEM-GISAVKFF  134 (212)
T ss_dssp             HHHTCSEEECS--SCC----HHHHHHHHHTTCCEECEECSHHHHHHHHHT-TCCEEEET
T ss_pred             HhhCCcEEECC--CCC----HHHHHHHHhcCCCccCCcCCHHHHHHHHHC-CCCEEEEc
Confidence            99999975432  233    478999999999999999999999999997 99887553

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.16  Score=44.49  Aligned_cols=119  Identities=11%  Similarity=0.155  Sum_probs=92.2

Q ss_pred             eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446          178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA  257 (355)
Q Consensus       178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA  257 (355)
                      .||+=+.-.+|.        +...++++..++|..+|=|--..   .+.++.+..+++...++ ++===-|+++-|+.+|
T Consensus        16 ~iipvlr~~~~~--------~a~~~~~al~~~Gi~~iEitl~t---p~a~~~I~~l~~~~p~~-~vGaGTV~~~~~~~~a   83 (213)
T d1wbha1          16 PVVPVIVVKKLE--------HAVPMAKALVAGGVRVLNVTLRT---ECAVDAIRAIAKEVPEA-IVGAGTVLNPQQLAEV   83 (213)
T ss_dssp             SEEEEECCSSGG--------GHHHHHHHHHHTTCCEEEEESCS---TTHHHHHHHHHHHCTTS-EEEEESCCSHHHHHHH
T ss_pred             CEEEEEECCCHH--------HHHHHHHHHHHCCCCEEEEeCCC---hhHHHHHHHHHHHCCCC-eeeccccccHHHHHHH
Confidence            477777544443        57899999999999999886443   36789999998752222 3333446899999999


Q ss_pred             HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      ..+|||-++-  -.++    .+++++|+..|+-.+=-|-|..|+..|++. |++++=+
T Consensus        84 ~~aGa~FivS--P~~~----~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~-G~~~vKl  134 (213)
T d1wbha1          84 TEAGAQFAIS--PGLT----EPLLKAATEGTIPLIPGISTVSELMLGMDY-GLKEFKF  134 (213)
T ss_dssp             HHHTCSCEEE--SSCC----HHHHHHHHHSSSCEEEEESSHHHHHHHHHT-TCCEEEE
T ss_pred             HHCCCcEEEC--CCCC----HHHHHHHHhcCCCccCCcCCHHHHHHHHHC-CCCEEEe
Confidence            9999997543  2344    468999999999999999999999999997 9988744

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=93.54  E-value=0.22  Score=43.57  Aligned_cols=118  Identities=12%  Similarity=0.154  Sum_probs=90.1

Q ss_pred             EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHH
Q 018446          179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR  258 (355)
Q Consensus       179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr  258 (355)
                      ||+=+.-.+|.        +...++++..++|..+|=|--..   .+.++-+..+|+...++ ++===-|+++-|+.+|.
T Consensus        19 iipvl~~~~~~--------~a~~~~~al~~~Gi~~iEitl~~---p~a~~~i~~l~~~~p~~-~vGaGTV~~~~~~~~a~   86 (216)
T d1mxsa_          19 ILPVITIAREE--------DILPLADALAAGGIRTLEVTLRS---QHGLKAIQVLREQRPEL-CVGAGTVLDRSMFAAVE   86 (216)
T ss_dssp             EEEEECCSCGG--------GHHHHHHHHHHTTCCEEEEESSS---THHHHHHHHHHHHCTTS-EEEEECCCSHHHHHHHH
T ss_pred             EEEEEECCCHH--------HHHHHHHHHHHCCCCEEEEeCCC---hhHHHHHHHHHHhCCCc-ceeeeeeecHHHHHHHH
Confidence            77777555554        68899999999999998765432   26678888888642221 23333468999999999


Q ss_pred             HcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446          259 TKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       259 ~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI  315 (355)
                      .+||+-++-  -.++    .+++++|++.|+-.+=-|-|..|+..|++. |++++=+
T Consensus        87 ~aGa~Fivs--P~~~----~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~-G~~~vKl  136 (216)
T d1mxsa_          87 AAGAQFVVT--PGIT----EDILEAGVDSEIPLLPGISTPSEIMMGYAL-GYRRFKL  136 (216)
T ss_dssp             HHTCSSEEC--SSCC----HHHHHHHHHCSSCEECEECSHHHHHHHHTT-TCCEEEE
T ss_pred             hCCCCEEEC--CCCc----HHHHHHHHhcCCCccCCcCCHHHHHHHHHC-CCCEEEe
Confidence            999997532  2233    478999999999999999999999999997 9987643

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.42  E-value=0.33  Score=41.27  Aligned_cols=135  Identities=16%  Similarity=0.150  Sum_probs=77.7

Q ss_pred             CCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC-HHHHHHHHhcC
Q 018446          159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS-FENLEAVRSAG  237 (355)
Q Consensus       159 p~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS-~edL~~VR~a~  237 (355)
                      |..++-++|..... -|--  -.|+ +.......+....++.++.+..++.|..++|+.+-. .|.+. -+....+++  
T Consensus        16 p~l~lee~l~~a~~-~G~d--giEl-~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~~l~~~~-~~~~~~~~~~~~~~~--   88 (271)
T d2q02a1          16 PGLSIEAFFRLVKR-LEFN--KVEL-RNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVY-PFNQLTEEVVKKTEG--   88 (271)
T ss_dssp             TTSCHHHHHHHHHH-TTCC--EEEE-ETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEET-TTTSCCHHHHHHHHH--
T ss_pred             CCCCHHHHHHHHHH-hCCC--EEEE-ecCcccccccccCCHHHHHHHHHHcCCcEEEeeccc-ccCCCCHHHHHHHHH--
Confidence            45666666655432 2322  2355 222222233445567777777777787766665432 23332 222333222  


Q ss_pred             CCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC----C----HHHHHHHHHHHHHcCCcEEEEeC--------CHHHH
Q 018446          238 VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL----P----DLDIRYMTKICKLLGLTALVEVH--------DEREM  301 (355)
Q Consensus       238 v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL----~----~~~L~~L~~~A~~LGLeaLVEVH--------~~eEL  301 (355)
                                     .|..|+.+||+.|.+....-    +    -+.|+++.++|.+.|+...+|-|        +.+++
T Consensus        89 ---------------~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~  153 (271)
T d2q02a1          89 ---------------LLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWA  153 (271)
T ss_dssp             ---------------HHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHH
T ss_pred             ---------------HHHHHHHcCCcEEEEecCCCCccchHHHHHHHHHHHHHHhccCCeEEEEeecCCcCcccCCHHHH
Confidence                           25678888999887643211    1    24678899999999999999974        66666


Q ss_pred             HHHhccCCCeEEEee
Q 018446          302 DRVLGIEGIELIGIN  316 (355)
Q Consensus       302 erAl~l~ga~iIGIN  316 (355)
                      .+.++..+.. +|++
T Consensus       154 ~~li~~~~~~-~g~~  167 (271)
T d2q02a1         154 QQLIREAGSP-FKVL  167 (271)
T ss_dssp             HHHHHHHTCC-CEEE
T ss_pred             HHHHHHhCCc-ccee
Confidence            6655533444 5765

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.40  E-value=0.15  Score=42.06  Aligned_cols=74  Identities=18%  Similarity=0.167  Sum_probs=54.5

Q ss_pred             HHHHHHHcCceEEEEecc--CCCCCC------CHHHHHHHHhcCCCCCeecccccc-CHHHHHHHHHcCCcchHHHHhcC
Q 018446          202 IARSYEKGGAACLSILTD--EKYFKG------SFENLEAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       202 iA~~Ye~~GAaaISVLTD--~~fF~G------S~edL~~VR~a~v~lPVLrKDFII-dpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      -+....+.|+++|.+-.-  .....+      .++.+..+++. +++||+ =++.| ++-++.++..+|||+|++--++.
T Consensus       131 ~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~iPVi-a~GGI~t~~d~~~~~~~GAdgV~iGsAi~  208 (222)
T d1y0ea_         131 EAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS-VDAKVI-AEGNVITPDMYKRVMDLGVHCSVVGGAIT  208 (222)
T ss_dssp             HHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH-CCSEEE-EESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             HHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhc-CCCcEE-EeCCCCCHHHHHHHHHcCCCEEEEchhhc
Confidence            456677889999875321  111111      15677777775 899999 46776 89999999999999999988888


Q ss_pred             CHHHH
Q 018446          273 PDLDI  277 (355)
Q Consensus       273 ~~~~L  277 (355)
                      .++++
T Consensus       209 rp~~~  213 (222)
T d1y0ea_         209 RPKEI  213 (222)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            77654

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.54  E-value=0.093  Score=47.25  Aligned_cols=54  Identities=17%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      -|+.++...|.++|+++|++.+..+.|.+.++.+..+ +++.+=|-..|+..+.+
T Consensus        84 els~~~~~~l~~~~k~~gi~~~~s~fd~~s~~~l~~l-~~~~iKIaS~d~~n~~L  137 (295)
T d1vlia2          84 EMPAEWILPLLDYCREKQVIFLSTVCDEGSADLLQST-SPSAFKIASYEINHLPL  137 (295)
T ss_dssp             SSCGGGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTT-CCSCEEECGGGTTCHHH
T ss_pred             ecCHHHhhhHHHHhhhcccceeeecccceeeeeeccc-CcceeEecccccccHHH
Confidence            4788999999999999999999999999999999987 88888888888876543

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.51  E-value=0.3  Score=43.71  Aligned_cols=99  Identities=20%  Similarity=0.223  Sum_probs=78.5

Q ss_pred             HHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc--CCHHHHH
Q 018446          201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV--LPDLDIR  278 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai--L~~~~L~  278 (355)
                      +-...|.++|...        |++|.+-.....+  +.          ++.| +.+++.+|-|+|=+-...  ++.++..
T Consensus        59 eKI~l~~~~~V~v--------~~GGtlfE~a~~q--g~----------~~~y-~~~~~~lGf~~iEiSdg~~~i~~~~~~  117 (251)
T d1qwga_          59 EKINYYKDWGIKV--------YPGGTLFEYAYSK--GK----------FDEF-LNECEKLGFEAVEISDGSSDISLEERN  117 (251)
T ss_dssp             HHHHHHHTTTCEE--------EECHHHHHHHHHT--TC----------HHHH-HHHHHHHTCCEEEECCSSSCCCHHHHH
T ss_pred             HHHHHHHHcCCeE--------eCCcHHHHHHHHc--CC----------HHHH-HHHHHHcCCCEEEEcCCccCCCHHHHH
Confidence            5567899999876        8899877765443  21          4566 889999999998775443  6888999


Q ss_pred             HHHHHHHHcCCcEEEEeCCH--H------------HHHHHhccCCCeEEEeeCCCCC
Q 018446          279 YMTKICKLLGLTALVEVHDE--R------------EMDRVLGIEGIELIGINNRNLE  321 (355)
Q Consensus       279 ~L~~~A~~LGLeaLVEVH~~--e------------ELerAl~l~ga~iIGINNRdL~  321 (355)
                      ++++.|.+.||.++-||+.+  .            .+++-|++ ||..|-|..|..-
T Consensus       118 ~~I~~~~~~G~~V~~EvG~K~~~~~~~~~~~~~i~~~~~~Lea-GA~~ViiEarEsg  173 (251)
T d1qwga_         118 NAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA-GADYVIIEGRESG  173 (251)
T ss_dssp             HHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH-TCSEEEECCTTTC
T ss_pred             HHHHHHHhCCCEEeecccCCCCCCccccCHHHHHHHHHHHHHC-CCceeEeehhhcC
Confidence            99999999999999999965  1            16777886 9999999988754

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=91.33  E-value=0.14  Score=44.67  Aligned_cols=138  Identities=20%  Similarity=0.160  Sum_probs=92.2

Q ss_pred             CCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHH---HHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446          195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFEN---LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV  271 (355)
Q Consensus       195 ~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~ed---L~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai  271 (355)
                      ..-||.++|+.|.+.||+-|-|+--.....|...+   +..+++. +.+|+----=|=+.-|+.....+|||-|.+-..+
T Consensus        28 ~~gdP~~~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~-~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~  106 (253)
T d1thfd_          28 DSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINTAA  106 (253)
T ss_dssp             CTTCHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred             ECCCHHHHHHHHHHcCCCEEEEEeecccccCcccHHHHHHHHHhc-cCccceeecccccchhhhhHHhcCCCEEEEChHH
Confidence            34589999999999999999875544555555444   5555654 7899877666666669999999999999997777


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEE---Ee-----------CC---------HHHHHHHhccCCCeEEEeeC--CCCCccccC
Q 018446          272 LPDLDIRYMTKICKLLGLTALV---EV-----------HD---------EREMDRVLGIEGIELIGINN--RNLETFEVD  326 (355)
Q Consensus       272 L~~~~L~~L~~~A~~LGLeaLV---EV-----------H~---------~eELerAl~l~ga~iIGINN--RdL~TfevD  326 (355)
                      +.+  ...+.+.+..+|=+.+|   .+           |.         .+-+++..+. |+.=|-+++  ||=.---.|
T Consensus       107 ~~n--~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~eii~tdI~~dGt~~G~d  183 (253)
T d1thfd_         107 VEN--PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYD  183 (253)
T ss_dssp             HHC--THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHT-TCSEEEEEETTTTTSCSCCC
T ss_pred             hhC--hHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhc-cCCEEEEEEecccCccCCcc
Confidence            743  23466777787766443   22           11         2346666664 665444443  333344467


Q ss_pred             hhhHHhhhcc
Q 018446          327 NSNTKKLLEG  336 (355)
Q Consensus       327 l~~t~~L~~~  336 (355)
                      ++...++...
T Consensus       184 ~~ll~~i~~~  193 (253)
T d1thfd_         184 TEMIRFVRPL  193 (253)
T ss_dssp             HHHHHHHGGG
T ss_pred             cccccccccc
Confidence            7777777544

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.22  E-value=1  Score=37.07  Aligned_cols=114  Identities=13%  Similarity=0.083  Sum_probs=78.4

Q ss_pred             HHHHHHHHcCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC----
Q 018446          201 EIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP----  273 (355)
Q Consensus       201 ~iA~~Ye~~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~----  273 (355)
                      .....+...||+.+.+.+...++...   .+.++.++.. ...+++..+ +.++-+...+..+|||.|-.-..-..    
T Consensus        89 ~~~~~~~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~-v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~  166 (230)
T d1yxya1          89 TEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEK-YPNQLLMAD-ISTFDEGLVAHQAGIDFVGTTLSGYTPYSR  166 (230)
T ss_dssp             HHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHH-CTTCEEEEE-CSSHHHHHHHHHTTCSEEECTTTTSSTTSC
T ss_pred             HHHHHHHhcCCCEEEEecccccccchhhHHHHHHHHHhc-CCCceEecC-CCCHHHHHHHHhcCCCEEEeeccccccccc
Confidence            44556666799999998887776665   3444455543 334455443 56777888899999998854322111    


Q ss_pred             --HHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeC
Q 018446          274 --DLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       274 --~~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINN  317 (355)
                        ......+...+...+.-.+++  |+|.+++.+++.+ ||+-|.|-.
T Consensus       167 ~~~~~~~~~~~~~~~~~ipvia~GGI~t~~d~~~al~~-GAd~V~vGs  213 (230)
T d1yxya1         167 QEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDL-GVAGIVVGG  213 (230)
T ss_dssp             CSSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHTT-CCSEEEECH
T ss_pred             ccchHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHc-CCCEEEECh
Confidence              011233567778889988887  8999999999997 999888753

>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Capsule biosynthesis protein SiaC, N-terminal domain
species: Neisseria meningitidis [TaxId: 487]

Probab=91.21  E-value=0.089  Score=46.87  Aligned_cols=54  Identities=11%  Similarity=0.134  Sum_probs=48.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446          271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV  325 (355)
Q Consensus       271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev  325 (355)
                      -|+.++..+|.++|+..|+..++-+.+.+.++.+... |++.+=|-..|+..+..
T Consensus        86 el~~~~~~~l~~~~k~~~i~~~~s~fd~~s~~~~~~~-~~~~~KIaS~d~~n~~L  139 (280)
T d2zdra2          86 ALNEEDEIKLKEYVESKGMIFISTPFSRAAALRLQRM-DIPAYKIGSGECNNYPL  139 (280)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHH-TCSCEEECGGGTTCHHH
T ss_pred             cccchhhHHHHHHHHhcCCccccccchhhcccccccc-cccceeccchhccccHh
Confidence            4788999999999999999999999999999999987 89999999998876653

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=90.87  E-value=0.52  Score=40.83  Aligned_cols=67  Identities=16%  Similarity=0.048  Sum_probs=50.3

Q ss_pred             CCHHHHHHHHHHcCceEEEEeccCCCCCC-------------------------CHHHHHHHHhcCCCCCeeccccccCH
Q 018446          197 FDPVEIARSYEKGGAACLSILTDEKYFKG-------------------------SFENLEAVRSAGVKCPLLCKEFIVDA  251 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G-------------------------S~edL~~VR~a~v~lPVLrKDFIIdp  251 (355)
                      .++ +.++.+.++||++|-|-.   +.++                         ..+.|..++++..++||+.-==|-++
T Consensus       171 ~~~-e~a~~~~~aGvd~i~vsn---~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g  246 (310)
T d1vcfa1         171 LSR-EAALALRDLPLAAVDVAG---AGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTG  246 (310)
T ss_dssp             CCH-HHHHHHTTSCCSEEECCC---BTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSH
T ss_pred             ccH-HHHHHHHHcCCCEEEecc---ccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCch
Confidence            344 567778889999987642   2222                         34456666666568999998888899


Q ss_pred             HHHHHHHHcCCcchHH
Q 018446          252 WQIYYARTKGADAVLL  267 (355)
Q Consensus       252 yQI~eAr~~GADAVLL  267 (355)
                      .-|..|.++|||+|.+
T Consensus       247 ~Dv~KALalGAdaV~i  262 (310)
T d1vcfa1         247 TDGAKALALGADLLAV  262 (310)
T ss_dssp             HHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHhCCCEeeE
Confidence            9999999999999954

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=0.26  Score=39.94  Aligned_cols=112  Identities=13%  Similarity=0.008  Sum_probs=75.5

Q ss_pred             HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccc--cCHHHHHHHHHcCCcchHHHHhcCCHHHH
Q 018446          200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI--VDAWQIYYARTKGADAVLLIAAVLPDLDI  277 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFI--IdpyQI~eAr~~GADAVLLIaaiL~~~~L  277 (355)
                      .++++... .+.+.+-+-++..+-.| .+.+..+|+...+.+++..-.+  +..++...+..+|||.|.+.+.. +.+.+
T Consensus        17 ~~~~~~~~-~~vdiikig~~~~~~~G-~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~gad~vtvh~~~-g~~~~   93 (213)
T d1q6oa_          17 YETTRLIA-EEVDIIEVGTILCVGEG-VRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCA-DINTA   93 (213)
T ss_dssp             HHHHHHHG-GGCSEEEECHHHHHHHC-THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS-CHHHH
T ss_pred             HHHHHhcC-CCccEEEeCeeccccCC-HHHHHHHHHhcccccceeEEeeccchHHHHHHHHHcCCCEEEEeccC-CchHH
Confidence            34555443 46788888776543333 6778888875446676643333  34456677788999998776443 56679


Q ss_pred             HHHHHHHHHcCCcEEEEe---CCHHHHHHHhccCCCeEEEe
Q 018446          278 RYMTKICKLLGLTALVEV---HDEREMDRVLGIEGIELIGI  315 (355)
Q Consensus       278 ~~L~~~A~~LGLeaLVEV---H~~eELerAl~l~ga~iIGI  315 (355)
                      +.+++.++++|+...+..   ++.+........ ++..+.+
T Consensus        94 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~  133 (213)
T d1q6oa_          94 KGALDVAKEFNGDVQIELTGYWTWEQAQQWRDA-GIGQVVY  133 (213)
T ss_dssp             HHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHT-TCCEEEE
T ss_pred             HHHHHHHHHcCCceecccCCCCCHHHHHHHHHh-HHHHHHH
Confidence            999999999999998885   455666666654 6655544

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.28  E-value=0.33  Score=42.47  Aligned_cols=135  Identities=21%  Similarity=0.279  Sum_probs=90.0

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD  274 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~  274 (355)
                      ||.++|+.|...||.-|-|.-=.....|.   ++.+..+.+. +.+|+-.===|-+.-|+......|||-|.+-...+.+
T Consensus        33 dP~~~a~~~~~~gadei~ivDl~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~  111 (252)
T d1h5ya_          33 DPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEA-VSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN  111 (252)
T ss_dssp             CHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHH-CSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHC
T ss_pred             CHHHHHHHHHHCCCCEEEEEeccccccccccHHHHHHHHHhh-cCCcceeecccchhhhhhhHhhcCCcEEEecccccCC
Confidence            89999999999999999666433333343   3456667765 8999877666667889999999999999886555543


Q ss_pred             HHHHHHHHHHHHcCCcEEE---Ee-----------C--------CHHHH-HHHhccCCCeEEEeeCCCCC--ccccChhh
Q 018446          275 LDIRYMTKICKLLGLTALV---EV-----------H--------DEREM-DRVLGIEGIELIGINNRNLE--TFEVDNSN  329 (355)
Q Consensus       275 ~~L~~L~~~A~~LGLeaLV---EV-----------H--------~~eEL-erAl~l~ga~iIGINNRdL~--TfevDl~~  329 (355)
                      .  ..+.+.+..+|=+.+|   .+           |        +..|+ +++.+. |+.=|-+++-+-.  --..|++.
T Consensus       112 ~--~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-g~~eii~tdI~~dG~~~G~d~~~  188 (252)
T d1h5ya_         112 P--QLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEEL-GAGEILLTSIDRDGTGLGYDVEL  188 (252)
T ss_dssp             T--HHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHH-TCSEEEEEETTTTTTCSCCCHHH
T ss_pred             c--chHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhc-CCCEEEEEeecccCccCCcCHHH
Confidence            2  3355677777766443   22           1        34443 444554 6666666655443  33367777


Q ss_pred             HHhhhcc
Q 018446          330 TKKLLEG  336 (355)
Q Consensus       330 t~~L~~~  336 (355)
                      .+++...
T Consensus       189 ~~~i~~~  195 (252)
T d1h5ya_         189 IRRVADS  195 (252)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7777654

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.02  E-value=1.6  Score=39.32  Aligned_cols=91  Identities=12%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cCC--HHHHHHHHHHHHH--cCCcEEEE-
Q 018446          223 FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VLP--DLDIRYMTKICKL--LGLTALVE-  294 (355)
Q Consensus       223 F~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL~--~~~L~~L~~~A~~--LGLeaLVE-  294 (355)
                      ...+++++..+|+. .++|++-|.. .++--...|..+|+|+|.+--.   .|+  ..-+..|.+++..  -.++.++- 
T Consensus       202 ~~~~~~~i~~l~~~-~~~pii~Kgi-~~~~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadG  279 (349)
T d1tb3a1         202 ASFCWNDLSLLQSI-TRLPIILKGI-LTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDG  279 (349)
T ss_dssp             CCCCHHHHHHHHTT-CCSCEEEEEE-CSHHHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEES
T ss_pred             CCCCHHHHHHHHHh-cCCCcccchh-hhhHHHHHHHHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEecc
Confidence            44678999999985 8999999986 7888899999999999865211   111  1123334444443  45677775 


Q ss_pred             -eCCHHHHHHHhccCCCeEEEee
Q 018446          295 -VHDEREMDRVLGIEGIELIGIN  316 (355)
Q Consensus       295 -VH~~eELerAl~l~ga~iIGIN  316 (355)
                       |.+-.|+-+||.+ ||+.+||-
T Consensus       280 GIR~G~Dv~KALAL-GA~~V~ig  301 (349)
T d1tb3a1         280 GVRTGTDVLKALAL-GARCIFLG  301 (349)
T ss_dssp             SCCSHHHHHHHHHT-TCSCEEES
T ss_pred             CcCcHHHHHHHHHc-CCCEEEEC
Confidence             8999999999998 99999993

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=87.94  E-value=0.92  Score=38.47  Aligned_cols=127  Identities=16%  Similarity=0.214  Sum_probs=84.3

Q ss_pred             CceEEeEeeecCCCCCCCCCCCCHHHHHHHHH----HcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecccccc--
Q 018446          176 LPALIAEVKKASPSRGILREDFDPVEIARSYE----KGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV--  249 (355)
Q Consensus       176 ~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye----~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFII--  249 (355)
                      ++-||+=.|=--...|     -+...+++.+.    ..++.+   ..-|.     +-+|..+.+. .++|+-+.|.--  
T Consensus         5 k~iii~NwKmn~~~~~-----~~~~~~~~~~~~~~~~~~~~v---vvaP~-----~~~L~~~~~~-~~i~vgaQn~~~~~   70 (224)
T d1hg3a_           5 EPIIAINFKTYIEATG-----KRALEIAKAAEKVYKETGVTI---VVAPQ-----LVDLRMIAES-VEIPVFAQHIDPIK   70 (224)
T ss_dssp             SSEEEEECTBCGGGSH-----HHHHHHHHHHHHHHHTTCCEE---EEECC-----HHHHHHHHHS-CSSCBEESCCCSCC
T ss_pred             CCEEEEEcccCcChHH-----HHHHHHHHHHHhccccCCceE---EEeCC-----HHHHHhhccc-cceeeeeccccccc
Confidence            4567777765421111     12344554444    334443   23343     4478888774 899999888742  


Q ss_pred             -----CHHHHHHHHHcCCcchHHH--HhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446          250 -----DAWQIYYARTKGADAVLLI--AAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN  317 (355)
Q Consensus       250 -----dpyQI~eAr~~GADAVLLI--aaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINN  317 (355)
                           -+......+.+|++.+++-  =.-+.-.+..+.++.|.+.||.++++|++..|...+..+ +..+|++..
T Consensus        71 ~Ga~TGeis~~~l~~~g~~~~iiGHSErr~~~~e~~~~i~~~~~~gl~~i~cv~~~~~~~~~~~~-~~~iiAyEp  144 (224)
T d1hg3a_          71 PGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSNNPAVSAAVAAL-NPDYVAVEP  144 (224)
T ss_dssp             SBSCTTCCCHHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT-CCSEEEECC
T ss_pred             ccchhheechhhccccCcceeeeccccccccccchhHHHHHHHHcCCceeechhhHHHHHhhhhc-ccceEEecc
Confidence                 1123344667899999872  223445577888999999999999999999999998887 788998854

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.63  E-value=1.6  Score=37.63  Aligned_cols=126  Identities=15%  Similarity=0.047  Sum_probs=84.8

Q ss_pred             CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHH----HHHHHHhcCCCCCeeccc----
Q 018446          175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSAGVKCPLLCKE----  246 (355)
Q Consensus       175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~e----dL~~VR~a~v~lPVLrKD----  246 (355)
                      ++..||+=+--.|.        .+..++|+.+++.||+++.|+. |.||..+.+    +.+.|.++ +++|++-=+    
T Consensus        69 ~~~~vi~gv~~~st--------~~ai~~a~~A~~~Gad~v~v~p-P~y~~~s~~~i~~~~~~ia~a-~~~pi~iYn~P~~  138 (295)
T d1o5ka_          69 GKIPVIVGAGTNST--------EKTLKLVKQAEKLGANGVLVVT-PYYNKPTQEGLYQHYKYISER-TDLGIVVYNVPGR  138 (295)
T ss_dssp             TSSCEEEECCCSCH--------HHHHHHHHHHHHHTCSEEEEEC-CCSSCCCHHHHHHHHHHHHTT-CSSCEEEEECHHH
T ss_pred             cCCceEeecccccH--------HHHHHHHHHHHHcCCCEEEEeC-CCCCCCCHHHHHHHHHHHHhc-cCCCeeEEeccch
Confidence            45678886632222        2678999999999999999977 678888864    45567765 899988644    


Q ss_pred             --cccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCe
Q 018446          247 --FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIE  311 (355)
Q Consensus       247 --FIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~  311 (355)
                        +-+++-++.+-...--.-+-+--+.-+......++......+-...|-.-....+-..+.. |++
T Consensus       139 ~g~~~~~~~~~~l~~~~~ni~~iK~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~-Ga~  204 (295)
T d1o5ka_         139 TGVNVLPETAARIAADLKNVVGIKEANPDIDQIDRTVSLTKQARSDFMVWSGNDDRTFYLLCA-GGD  204 (295)
T ss_dssp             HSCCCCHHHHHHHHHHCTTEEEEEECCCCHHHHHHHHHHHHHHCTTCEEEESSGGGHHHHHHH-TCC
T ss_pred             hcccchhHHHHHHHhhcccccceecCCcchhhhhhHHHHhhhcCCcceeccccccchhhhhhc-CCC
Confidence              4567777766433333333333334444566667777777788888888888777766665 554

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=86.50  E-value=0.38  Score=41.39  Aligned_cols=107  Identities=18%  Similarity=0.188  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHH-------HHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446          198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENL-------EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA  270 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL-------~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa  270 (355)
                      |+.++++.-.++|+.+|=.- |+..=..+.+.+       ..+++. .+.|++-.|    -++  .|...|||+|=|-..
T Consensus        31 ~~~~~v~~al~~Gv~~iqlR-~K~~~~~~~~~~~~~a~~l~~lc~~-~~~~liInd----~~~--lA~~~~adGvHl~~~  102 (226)
T d2tpsa_          31 DPVTVVQKALKGGATLYQFR-EKGGDALTGEARIKFAEKAQAACRE-AGVPFIVND----DVE--LALNLKADGIHIGQE  102 (226)
T ss_dssp             CHHHHHHHHHHHTCSEEEEC-CCSTTCCCHHHHHHHHHHHHHHHHH-HTCCEEEES----CHH--HHHHHTCSEEEECTT
T ss_pred             CHHHHHHHHHHCCCCEEEEc-CCCccchhHHHHHHHHHHHHHHHHH-hCCeEEEcC----CHH--HHhhccCCEEEeccc
Confidence            67888888888899997543 433222232222       222222 356766555    344  477789999987666


Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446          271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR  318 (355)
Q Consensus       271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR  318 (355)
                      -++.........     .+-..+-+||.+|+.+|... |++.|++-.-
T Consensus       103 d~~~~~~r~~~~-----~~iig~S~h~~~e~~~a~~~-g~DYi~~gpv  144 (226)
T d2tpsa_         103 DANAKEVRAAIG-----DMILGVSAHTMSEVKQAEED-GADYVGLGPI  144 (226)
T ss_dssp             SSCHHHHHHHHT-----TSEEEEEECSHHHHHHHHHH-TCSEEEECCS
T ss_pred             cchhhhhhhccc-----ceeeeeeccchHHHHHHHhC-cCCeEEEecc
Confidence            666544333221     23355679999999999997 9999998763

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.02  E-value=0.32  Score=44.66  Aligned_cols=67  Identities=18%  Similarity=0.145  Sum_probs=50.1

Q ss_pred             HHHHHHHHHcCceEEEEeccCC-------CCC---CC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH
Q 018446          200 VEIARSYEKGGAACLSILTDEK-------YFK---GS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL  266 (355)
Q Consensus       200 ~~iA~~Ye~~GAaaISVLTD~~-------fF~---GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL  266 (355)
                      .+.|+.+.++||+++-|=-.+-       --+   +.   .-+...++. ..++||+.--=|-++-.|..|.++|||+|.
T Consensus       150 ~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~-~~~vpvIAdGGi~~~gdiakAla~GAd~Vm  228 (330)
T d1vrda1         150 PEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVAR-KYDVPIIADGGIRYSGDIVKALAAGAESVM  228 (330)
T ss_dssp             HHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHH-TTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHcCCCEEeeccccCccccccceeccccccchhHHHHHHHHH-hcCceEEecCCcccCCchheeeeccCceee
Confidence            3678889999999997733321       111   11   334455565 378999999999999999999999999997


Q ss_pred             H
Q 018446          267 L  267 (355)
Q Consensus       267 L  267 (355)
                      +
T Consensus       229 ~  229 (330)
T d1vrda1         229 V  229 (330)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=84.84  E-value=2.1  Score=36.77  Aligned_cols=141  Identities=22%  Similarity=0.154  Sum_probs=93.9

Q ss_pred             CCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHH---HHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENL---EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL---~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      .-||.++|+.|.+.||.-|=|+--.....|...++   ..+.+. +.+|+--===|-+.-|+.....+|||.|.+-..++
T Consensus        29 ~gdP~~~a~~~~~~g~dei~iiDl~~~~~~~~~~~~~i~~i~~~-~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~  107 (251)
T d1ka9f_          29 AGDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAER-VFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAV  107 (251)
T ss_dssp             TTCHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEecccccccchhHHHHHHHHHhc-cCcchheeccccCHHHHHHHHHcCCCEEEECchhh
Confidence            34899999999999999988777555666554444   455553 78898775555566788888899999998866665


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEE--------------eC--------CH-HHHHHHhccCCCeEEEeeC--CCCCccccCh
Q 018446          273 PDLDIRYMTKICKLLGLTALVE--------------VH--------DE-REMDRVLGIEGIELIGINN--RNLETFEVDN  327 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLVE--------------VH--------~~-eELerAl~l~ga~iIGINN--RdL~TfevDl  327 (355)
                      .+.  .-+-+.++.+|-+.+|-              +|        +. +-+++..+. |+.=|-+++  ||=..--.|+
T Consensus       108 ~n~--~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~eii~tdi~~dG~~~G~d~  184 (251)
T d1ka9f_         108 RRP--ELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVEL-GAGEILLTSMDRDGTKEGYDL  184 (251)
T ss_dssp             HCT--HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHH-TCCEEEEEETTTTTTCSCCCH
T ss_pred             hCH--HHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhc-CCCEEEEEeecccCccCCcch
Confidence            432  34567888888776652              11        22 335555554 666555555  3333344778


Q ss_pred             hhHHhhhcccccc
Q 018446          328 SNTKKLLEGERGE  340 (355)
Q Consensus       328 ~~t~~L~~~~~~~  340 (355)
                      +...++......+
T Consensus       185 ~l~~~i~~~~~~p  197 (251)
T d1ka9f_         185 RLTRMVAEAVGVP  197 (251)
T ss_dssp             HHHHHHHHHCSSC
T ss_pred             hHHHHHHhhccee
Confidence            8787776553333

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.27  E-value=0.22  Score=46.55  Aligned_cols=81  Identities=22%  Similarity=0.250  Sum_probs=55.9

Q ss_pred             EeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC-----------------HHHHHHHHhcCCCCCeec
Q 018446          182 EVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS-----------------FENLEAVRSAGVKCPLLC  244 (355)
Q Consensus       182 EvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS-----------------~edL~~VR~a~v~lPVLr  244 (355)
                      ++|...|..-+|..+.--.+.|+.+.++||++|-|=.    ..||                 ..+...+++. ...||+.
T Consensus       141 ~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGi----G~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~-~~~~iIA  215 (365)
T d1zfja1         141 EIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGI----GPGSICTTRVVAGVGVPQVTAIYDAAAVARE-YGKTIIA  215 (365)
T ss_dssp             HHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECS----SCCTTBCHHHHTCCCCCHHHHHHHHHHHHHH-TTCEEEE
T ss_pred             HHHhhCCCcceeecccccHHHHHHHHhcCCceEEeee----cccccccCcceeeeeccchhHHHHHHHHHHh-CCceEEe
Confidence            3444445443333332223678888899999997732    3344                 2334444543 6789999


Q ss_pred             cccccCHHHHHHHHHcCCcchHH
Q 018446          245 KEFIVDAWQIYYARTKGADAVLL  267 (355)
Q Consensus       245 KDFIIdpyQI~eAr~~GADAVLL  267 (355)
                      .-=|-++-.|..|.++|||+|.|
T Consensus       216 DGGi~~~GDi~KAla~GAd~VMl  238 (365)
T d1zfja1         216 DGGIKYSGDIVKALAAGGNAVML  238 (365)
T ss_dssp             ESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             cCCcCcchhhhhhhhccCCEEEe
Confidence            99999999999999999999986

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.19  E-value=0.98  Score=39.84  Aligned_cols=75  Identities=24%  Similarity=0.255  Sum_probs=58.9

Q ss_pred             CHHHHHHHHHHcCceEEEEecc----------C-----------CCCCC---------CHHHHHHHHhcCCCCCeecccc
Q 018446          198 DPVEIARSYEKGGAACLSILTD----------E-----------KYFKG---------SFENLEAVRSAGVKCPLLCKEF  247 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD----------~-----------~fF~G---------S~edL~~VR~a~v~lPVLrKDF  247 (355)
                      +..++++..+++|+++|.+..-          .           ..++|         +++.+..+|+...++||+.--=
T Consensus       184 ~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GG  263 (312)
T d1gtea2         184 DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGG  263 (312)
T ss_dssp             CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESS
T ss_pred             hHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcC
Confidence            6788999999999999976421          0           11222         2678888888634699999999


Q ss_pred             ccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          248 IVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       248 IIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      |-++..+.+...+|||+|-+--+++
T Consensus       264 I~~~~d~~~~l~aGA~~Vqv~ta~~  288 (312)
T d1gtea2         264 IDSAESGLQFLHSGASVLQVCSAVQ  288 (312)
T ss_dssp             CCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             CCCHHHHHHHHHcCCCeeEECHhhh
Confidence            9999999999999999999977765

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=83.57  E-value=1.2  Score=38.08  Aligned_cols=94  Identities=20%  Similarity=0.175  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHHcCceEEEEe----ccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446          197 FDPVEIARSYEKGGAACLSIL----TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL  272 (355)
Q Consensus       197 ~Dp~~iA~~Ye~~GAaaISVL----TD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL  272 (355)
                      -||.++|+.|.+.||.-|-|.    ....  .-.++.+..+.+. +.+|+-.=-=|-+..|+......|||.|++-..++
T Consensus        31 ~dP~~~a~~~~~~ga~~l~i~DLd~~~~~--~~~~~~i~~i~~~-~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~  107 (239)
T d1vzwa1          31 GSPLEAALAWQRSGAEWLHLVDLDAAFGT--GDNRALIAEVAQA-MDIKVELSGGIRDDDTLAAALATGCTRVNLGTAAL  107 (239)
T ss_dssp             CCHHHHHHHHHHTTCSEEEEEEHHHHHTS--CCCHHHHHHHHHH-CSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeecccccc--cchHHHHHHHHhh-cCcceEeecccccchhhhhhhccccccchhhHHhh
Confidence            389999999999999999887    2211  2256777778775 78999888888899999999999999999977766


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEe
Q 018446          273 PDLDIRYMTKICKLLGLTALVEV  295 (355)
Q Consensus       273 ~~~~L~~L~~~A~~LGLeaLVEV  295 (355)
                      .+.+  .+.+.+...|-+.+|-+
T Consensus       108 ~~~~--~~~~~~~~~g~~~vv~~  128 (239)
T d1vzwa1         108 ETPE--WVAKVIAEHGDKIAVGL  128 (239)
T ss_dssp             HCHH--HHHHHHHHHGGGEEEEE
T ss_pred             hccc--cchhhhccCCceeeeee
Confidence            5433  34466777787777644

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=82.61  E-value=0.79  Score=39.88  Aligned_cols=92  Identities=21%  Similarity=0.252  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHcCceEEEEeccC---------------CCCCC---------CHHHHHHHHhcCCCCCeeccccccCHHH
Q 018446          198 DPVEIARSYEKGGAACLSILTDE---------------KYFKG---------SFENLEAVRSAGVKCPLLCKEFIVDAWQ  253 (355)
Q Consensus       198 Dp~~iA~~Ye~~GAaaISVLTD~---------------~fF~G---------S~edL~~VR~a~v~lPVLrKDFIIdpyQ  253 (355)
                      |..++|+..+++|++++.+.-..               ...+|         +++.+..+++. +++||+--==|.++-+
T Consensus       177 ~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~-~~ipIig~GGI~s~~D  255 (311)
T d1ep3a_         177 DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQD-VDIPIIGMGGVANAQD  255 (311)
T ss_dssp             CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTT-CSSCEEECSSCCSHHH
T ss_pred             chHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhh-cceeEEEeCCcCCHHH
Confidence            56789999999999998874210               01111         27888899885 8999999998999999


Q ss_pred             HHHHHHcCCcchHHHHhcCC-H----HHHHHHHHHHHHcCCc
Q 018446          254 IYYARTKGADAVLLIAAVLP-D----LDIRYMTKICKLLGLT  290 (355)
Q Consensus       254 I~eAr~~GADAVLLIaaiL~-~----~~L~~L~~~A~~LGLe  290 (355)
                      +++...+|||+|.+--+++. +    +-+++|.++-.+.|.+
T Consensus       256 a~~~i~~GAd~V~ig~~~~~~P~i~~~I~~~L~~~m~~~g~~  297 (311)
T d1ep3a_         256 VLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQYRIE  297 (311)
T ss_dssp             HHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHcCCCEEEecHHHHcCChHHHHHHHHHHHHHHHcCCC
Confidence            99999999999988444442 1    2233444555566643

>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Glycerophosphodiester phosphodiesterase UgpQ
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=81.91  E-value=4.1  Score=33.69  Aligned_cols=129  Identities=13%  Similarity=0.124  Sum_probs=72.5

Q ss_pred             cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCC-CCHHHHHHHHhcCCCC
Q 018446          162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK-GSFENLEAVRSAGVKC  240 (355)
Q Consensus       162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~-GS~edL~~VR~a~v~l  240 (355)
                      .|.++|....   ++..+..|+|-..           +..++....+.|..      +.-+|. -+.+.+..+|+...++
T Consensus        91 tL~evl~~~~---~~~~l~iEiK~~~-----------~~~v~~l~~~~~~~------~~v~~~Sf~~~~l~~~~~~~P~~  150 (240)
T d1zcca1          91 RLDAYLEHLR---GRAGVYIELKYCD-----------PAKVAALVRHLGMV------RDTFYFSFSEEMRQGLQSIAPEF  150 (240)
T ss_dssp             BHHHHHHHHT---TTCEEEEEEEESC-----------HHHHHHHHHHHTCS------TTEEEECSCHHHHHHHHHHCTTS
T ss_pred             hHHHhhhccc---ccceeEEEEccCc-----------chhhhHHHHHHHhh------cccccccccHHHHHHHHHhhhcc
Confidence            4666665432   4568999999643           33444444444431      222333 4789999999864566


Q ss_pred             Cee-ccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHH-HHHHhccCCCeEEEee
Q 018446          241 PLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDERE-MDRVLGIEGIELIGIN  316 (355)
Q Consensus       241 PVL-rKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eE-LerAl~l~ga~iIGIN  316 (355)
                      |+. .-|..-++ ....+...+....+.-..+++    ..+++.++..|+.+.+ -|.|..+ ++.+.++ |++.|--|
T Consensus       151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~Gl~v~~wTvnd~~~~~~~l~~~-gVdgI~TD  223 (240)
T d1zcca1         151 RRMMTLDIAKSP-SLVGAVHHASIIEITPAQMRR----PGIIEASRKAGLEIMVYYGGDDMAVHREIATS-DVDYINLD  223 (240)
T ss_dssp             EEEEEHHHHSST-HHHHHTTCCSEEEECHHHHHS----HHHHHHHHHHTCEEEEECCCCCHHHHHHHHHS-SCSEEEES
T ss_pred             ceEEeecccccc-hhHHHHhcccccccchhhhCC----HHHHHHHHHCCCEEEEEccCCHHHHHHHHHHc-CCCEEEeC
Confidence            632 22222222 222232222222222223333    3578999999999988 4666555 4566676 88877655