Citrus Sinensis ID: 018448

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAALQLLMFLLPHHLLDGTNFILREFCFNHFKPLLLQLCVSLNFFMFCKELWLFSFFFWHSYSSRH
cccccccccccccccHHHHHHHHHcccccccccccccccccEEEEEccccEEEEHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHcccccEEEEEccccccccEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccccccccHHHHcccHHHHHHHHHHcccccccccccccccEEEEEccccEEEEEccHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHccccEEEcccccccHHHHHHHHcccccEEEEEccccccccHHHHHEccccEEEEEcccccccEEEEEEEcccccHcHHHHHHHHHHHHHHHHcccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHcccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
matgtataprqlsQKEADIQMMLAAEVHlgtkncdfQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIenpgdiivqsarpygqRAVLKFAKYTHAhaiagrhtpgtftnqmqtsfneprlliltdprtdhqpikeaalgniptiafcdtdspmryvdigipannkgkhsIGCLFWLLARMVLQmrgtirpghkwdVMVDLFfyrepeetkqaEEEETAAIDYATAeyntnltsgdqwpsqiadggwaggevqkpipgvpyfpeaapaatvplggdgwdavpapPMAALQLLMFLlphhlldgtnFILREFCFNHFKPLLLQLCVSLNFFMFCKELWLFSFFFwhsyssrh
matgtataprqlsqkEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPikeaalgniptiaFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGtirpghkwDVMVDLFFYREPEETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAALQLLMFLLPHHLLDGTNFILREFCFNHFKPLLLQLCVSLNFFMFCKELWLFSFFFWHSYSSRH
MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRepeetkqaeeeetaaIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDavpappmaalqllmfllphhllDGTNFILREFCFNHFKPLLLQLCVSLNFFMFCKELWLFSFFFWHSYSSRH
******************IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR**************AIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAALQLLMFLLPHHLLDGTNFILREFCFNHFKPLLLQLCVSLNFFMFCKELWLFSFFFWHSY****
***************EADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREP******************AEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAALQLLMFLLPHHLLDGTNFILREFCFNHFKPLLLQLCVSLNFFMFCKELWLFSFFFWHSYS***
***********LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPE********ETAAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAALQLLMFLLPHHLLDGTNFILREFCFNHFKPLLLQLCVSLNFFMFCKELWLFSFFFWHSYSSRH
*******APRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEET*****************************************************************PPMAALQLLMFLLPHHLLDGTNFILREFCFNHFKPLLLQLCVSLNFFMFCKELWLFSFFFWHSY****
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MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAALQLLMFLLPHHLLDGTNFILREFCFNHFKPLLLQLCVSLNFFMFCKELWLFSFFFWHSYSSRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
O65751300 40S ribosomal protein SA N/A no 0.794 0.94 0.788 1e-126
Q8H173280 40S ribosomal protein Sa- yes no 0.766 0.971 0.746 1e-120
A5BUU4312 40S ribosomal protein SA yes no 0.783 0.891 0.777 1e-120
O22518310 40S ribosomal protein SA no no 0.715 0.819 0.856 1e-119
O80377297 40S ribosomal protein SA N/A no 0.726 0.868 0.799 1e-117
Q9ZSR8292 40S ribosomal protein SA N/A no 0.783 0.952 0.743 1e-117
Q08682298 40S ribosomal protein Sa- no no 0.701 0.835 0.788 1e-115
Q01CH5287 40S ribosomal protein SA yes no 0.566 0.700 0.766 6e-90
A4RUK2290 40S ribosomal protein SA yes no 0.566 0.693 0.751 2e-88
A8IB25279 40S ribosomal protein SA N/A no 0.557 0.709 0.747 8e-86
>sp|O65751|RSSA_CICAR 40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1 Back     alignment and function desciption
 Score =  450 bits (1158), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/289 (78%), Positives = 247/289 (85%), Gaps = 7/289 (2%)

Query: 1   MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT TA + RQL+QKEADIQMMLAA+VHLGTKNC+FQMERY+FKRRNDGIYIINLGKTW+
Sbjct: 1   MATTTAPS-RQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWD 59

Query: 61  KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF 120
           KL +AAR+IVAIEN  DIIVQSARPYGQRAVLKFA+YT AHAIAGRHTPGTFTNQ+QTSF
Sbjct: 60  KLNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 119

Query: 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFW
Sbjct: 120 SEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFW 179

Query: 181 LLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEYNTNLTSGD 240
           LLARMVLQMRGTIRPG KWDVMVDLFFYREPEE KQ EE+E AA DYA A++N +    D
Sbjct: 180 LLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNVSAIPSD 239

Query: 241 -QWPSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAP 288
            QWP+ I D  W    V +PIP VP    AAP A   + GD  +AVP P
Sbjct: 240 GQWPAAI-DQPW-NDAVPQPIPAVPAVNWAAPEA---VAGDWGEAVPPP 283
Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
Cicer arietinum (taxid: 3827)
>sp|Q8H173|RSSA2_ARATH 40S ribosomal protein Sa-2 OS=Arabidopsis thaliana GN=RPSaB PE=1 SV=2 Back     alignment and function description
>sp|A5BUU4|RSSA_VITVI 40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1 Back     alignment and function description
>sp|O22518|RSSA_SOYBN 40S ribosomal protein SA OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|O80377|RSSA_DAUCA 40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSR8|RSSA_BRANA 40S ribosomal protein SA OS=Brassica napus GN=LRP PE=2 SV=1 Back     alignment and function description
>sp|Q08682|RSSA1_ARATH 40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3 Back     alignment and function description
>sp|Q01CH5|RSSA_OSTTA 40S ribosomal protein SA OS=Ostreococcus tauri GN=Ot03g03270 PE=3 SV=2 Back     alignment and function description
>sp|A4RUK2|RSSA_OSTLU 40S ribosomal protein SA OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_12355 PE=3 SV=1 Back     alignment and function description
>sp|A8IB25|RSSA_CHLRE 40S ribosomal protein SA OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_126059 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
3914935300 RecName: Full=40S ribosomal protein SA; 0.794 0.94 0.788 1e-124
358348100297 40S ribosomal protein SA [Medicago trunc 0.783 0.936 0.816 1e-120
255578243309 40S ribosomal protein sa, putative [Rici 0.715 0.822 0.828 1e-119
118481845316 unknown [Populus trichocarpa] 0.721 0.810 0.821 1e-119
224115486281 predicted protein [Populus trichocarpa] 0.746 0.943 0.779 1e-119
15229347280 40S ribosomal protein Sa-2 [Arabidopsis 0.766 0.971 0.746 1e-119
225442018312 PREDICTED: 40S ribosomal protein SA [Vit 0.783 0.891 0.777 1e-119
118484199316 unknown [Populus trichocarpa] 0.721 0.810 0.817 1e-118
449441203308 PREDICTED: 40S ribosomal protein SA-like 0.771 0.889 0.773 1e-118
21593022280 putative 40S ribosomal protein [Arabidop 0.766 0.971 0.743 1e-118
>gi|3914935|sp|O65751.1|RSSA_CICAR RecName: Full=40S ribosomal protein SA; AltName: Full=p40 gi|3204099|emb|CAA07226.1| ribosome-associated protein p40 [Cicer arietinum] Back     alignment and taxonomy information
 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/289 (78%), Positives = 247/289 (85%), Gaps = 7/289 (2%)

Query: 1   MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT TA + RQL+QKEADIQMMLAA+VHLGTKNC+FQMERY+FKRRNDGIYIINLGKTW+
Sbjct: 1   MATTTAPS-RQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWD 59

Query: 61  KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF 120
           KL +AAR+IVAIEN  DIIVQSARPYGQRAVLKFA+YT AHAIAGRHTPGTFTNQ+QTSF
Sbjct: 60  KLNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 119

Query: 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFW
Sbjct: 120 SEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFW 179

Query: 181 LLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEYNTNLTSGD 240
           LLARMVLQMRGTIRPG KWDVMVDLFFYREPEE KQ EE+E AA DYA A++N +    D
Sbjct: 180 LLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNVSAIPSD 239

Query: 241 -QWPSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAP 288
            QWP+ I D  W    V +PIP VP    AAP A   + GD  +AVP P
Sbjct: 240 GQWPAAI-DQPW-NDAVPQPIPAVPAVNWAAPEA---VAGDWGEAVPPP 283

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|358348100|ref|XP_003638087.1| 40S ribosomal protein SA [Medicago truncatula] gi|355504022|gb|AES85225.1| 40S ribosomal protein SA [Medicago truncatula] Back     alignment and taxonomy information
>gi|255578243|ref|XP_002529989.1| 40S ribosomal protein sa, putative [Ricinus communis] gi|223530512|gb|EEF32394.1| 40S ribosomal protein sa, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118481845|gb|ABK92859.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115486|ref|XP_002332146.1| predicted protein [Populus trichocarpa] gi|222875196|gb|EEF12327.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15229347|ref|NP_187128.1| 40S ribosomal protein Sa-2 [Arabidopsis thaliana] gi|73919128|sp|Q8H173.2|RSSA2_ARATH RecName: Full=40S ribosomal protein Sa-2; AltName: Full=p40 protein homolog gi|6175177|gb|AAF04903.1|AC011437_18 putative 40S ribosomal protein [Arabidopsis thaliana] gi|1498629|gb|AAB67866.1| p40 protein homolog [Arabidopsis thaliana] gi|332640613|gb|AEE74134.1| 40S ribosomal protein Sa-2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225442018|ref|XP_002268664.1| PREDICTED: 40S ribosomal protein SA [Vitis vinifera] gi|229891614|sp|A5BUU4.1|RSSA_VITVI RecName: Full=40S ribosomal protein SA gi|147782664|emb|CAN61790.1| hypothetical protein VITISV_015795 [Vitis vinifera] Back     alignment and taxonomy information
>gi|118484199|gb|ABK93980.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449441203|ref|XP_004138372.1| PREDICTED: 40S ribosomal protein SA-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|21593022|gb|AAM64971.1| putative 40S ribosomal protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2193997298 P40 "AT1G72370" [Arabidopsis t 0.785 0.936 0.718 5.3e-104
UNIPROTKB|Q8H3I3305 B1056G08.113 "Os07g0616600 pro 0.771 0.898 0.724 2e-102
TAIR|locus:2084988332 RPSAb "AT3G04770" [Arabidopsis 0.571 0.611 0.876 2.3e-94
UNIPROTKB|A8IB25279 CHLREDRAFT_126059 "40S ribosom 0.557 0.709 0.747 6.2e-78
UNIPROTKB|Q6P8D1306 rpsa "40S ribosomal protein SA 0.749 0.869 0.538 3.3e-70
FB|FBgn0003517313 sta "stubarista" [Drosophila m 0.557 0.632 0.676 1.1e-69
UNIPROTKB|P50890296 RPSA "40S ribosomal protein SA 0.715 0.858 0.552 3e-69
ZFIN|ZDB-GENE-040426-811308 rpsa "ribosomal protein SA" [D 0.735 0.847 0.542 3e-69
UNIPROTKB|P26452295 RPSA "40S ribosomal protein SA 0.557 0.671 0.656 1.7e-68
UNIPROTKB|E2RJ06314 RPSA "Uncharacterized protein" 0.557 0.630 0.656 1.7e-68
TAIR|locus:2193997 P40 "AT1G72370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 207/288 (71%), Positives = 223/288 (77%)

Query:     1 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWE 60
             MAT  + +  QLSQKEAD++MM AAEVHLGTKNC++QMERYVFKRRNDGIYI NLGKTWE
Sbjct:     1 MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query:    61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF 120
             KLQMAARVIVAIENP DIIVQSARPYGQRAVLKFA+YT A+AIAGRHTPGTFTNQMQTSF
Sbjct:    61 KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query:   121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
             +EPRLLILTDPRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFW
Sbjct:   121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query:   181 LLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXX-XIDYATA---EYNTNL 236
             LLARMVLQMRGTI  G KWDVMVDLFFYR                 +Y      EY   +
Sbjct:   181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYG--M 238

Query:   237 TSGDQWPS-QIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWD 283
               GDQW + QI D  W G E Q PI   P     + +A  P  G GW+
Sbjct:   239 VGGDQWTTAQIPDAAWPG-EGQAPISAAPAAASWSDSAAAPADG-GWE 284
GO:0000028 "ribosomal small subunit assembly" evidence=IBA
GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA
GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS;IBA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005840 "ribosome" evidence=IEA
GO:0006407 "rRNA export from nucleus" evidence=IBA
GO:0006412 "translation" evidence=IEA;ISS;IBA
GO:0015935 "small ribosomal subunit" evidence=IEA;IDA
GO:0030686 "90S preribosome" evidence=IBA
GO:0042256 "mature ribosome assembly" evidence=IDA
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA
GO:0005634 "nucleus" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0006970 "response to osmotic stress" evidence=IEP
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
UNIPROTKB|Q8H3I3 B1056G08.113 "Os07g0616600 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2084988 RPSAb "AT3G04770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8IB25 CHLREDRAFT_126059 "40S ribosomal protein SA" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P8D1 rpsa "40S ribosomal protein SA" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
FB|FBgn0003517 sta "stubarista" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P50890 RPSA "40S ribosomal protein SA" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-811 rpsa "ribosomal protein SA" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P26452 RPSA "40S ribosomal protein SA" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJ06 RPSA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H173RSSA2_ARATHNo assigned EC number0.74650.76610.9714yesno
Q9ZSR8RSSA_BRANANo assigned EC number0.74320.78300.9520N/Ano
P50890RSSA_CHICKNo assigned EC number0.55630.74640.8952yesno
O65751RSSA_CICARNo assigned EC number0.78890.79430.94N/Ano
B5FXT6RSSA_TAEGUNo assigned EC number0.55630.74640.8952yesno
P38982RSSA_CRIGRNo assigned EC number0.63590.60280.7254yesno
P38983RSSA_RATNo assigned EC number0.63180.61400.7389yesno
P14206RSSA_MOUSENo assigned EC number0.64050.60280.7254yesno
O80377RSSA_DAUCANo assigned EC number0.79920.72670.8686N/Ano
P26452RSSA_BOVINNo assigned EC number0.64050.60280.7254yesno
Q6P8D1RSSA_XENTRNo assigned EC number0.55550.76330.8856yesno
Q4GWZ2RSSA_PIGNo assigned EC number0.64050.60280.7254yesno
P08865RSSA_HUMANNo assigned EC number0.63180.61400.7389yesno
Q803F6RSSA_DANRENo assigned EC number0.54540.75490.8701yesno
A4RUK2RSSA_OSTLUNo assigned EC number0.75120.56610.6931yesno
Q01CH5RSSA_OSTTANo assigned EC number0.76610.56610.7003yesno
A5BUU4RSSA_VITVINo assigned EC number0.77700.78300.8910yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0200000501
hypothetical protein (281 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_LG_VIII0253
RecName- Full=60S acidic ribosomal protein P0; (323 aa)
  •• •• 0.609
estExt_fgenesh4_pg.C_LG_X1707
RecName- Full=60S acidic ribosomal protein P0; (321 aa)
  •• •• 0.609
eugene3.00121232
hypothetical protein (152 aa)
  •• •  0.559
estExt_fgenesh4_pg.C_LG_II1328
SubName- Full=Putative uncharacterized protein; (152 aa)
  •• •  0.557
grail3.0005049701
SubName- Full=Putative uncharacterized protein; (152 aa)
  •• •  0.557
grail3.0035003102
hypothetical protein (152 aa)
  •• •  0.557
estExt_fgenesh4_pm.C_LG_III0216
SubName- Full=Putative uncharacterized protein; (146 aa)
  •• •  0.518
estExt_fgenesh4_pg.C_LG_V0222
SubName- Full=Putative uncharacterized protein; (147 aa)
  •• •  0.518
estExt_fgenesh4_pg.C_LG_VII0552
SubName- Full=Putative uncharacterized protein; (146 aa)
  •• •  0.516
eugene3.00030772
hypothetical protein (464 aa)
  ••••  0.504

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
PTZ00254249 PTZ00254, PTZ00254, 40S ribosomal protein SA; Prov 1e-136
TIGR01012196 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosol 1e-130
cd01425193 cd01425, RPS2, Ribosomal protein S2 (RPS2), involv 1e-70
PRK04020204 PRK04020, rps2P, 30S ribosomal protein S2; Provisi 1e-66
pfam00318205 pfam00318, Ribosomal_S2, Ribosomal protein S2 3e-63
COG0052252 COG0052, RpsB, Ribosomal protein S2 [Translation, 1e-56
TIGR01011225 TIGR01011, rpsB_bact, ribosomal protein S2, bacter 2e-13
CHL00067230 CHL00067, rps2, ribosomal protein S2 3e-12
PRK05299258 PRK05299, rpsB, 30S ribosomal protein S2; Provisio 3e-07
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional Back     alignment and domain information 
 Score =  388 bits (998), Expect = e-136
 Identities = 139/227 (61%), Positives = 175/227 (77%)

Query: 5   TATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQM 64
            ++ P+ L+ KE DI+ MLA + H+GTKN +  M++YV+KR  +G++IINL KTWEKL++
Sbjct: 1   VSSGPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKL 60

Query: 65  AARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPR 124
           AARVI AIENP D++V S+RPYGQRAVLKFA+YT A AIAGR TPGTFTNQ+Q  F EPR
Sbjct: 61  AARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPR 120

Query: 125 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLAR 184
           LLI+TDPRTDHQ I+EA+  NIP IA CDTDSP+ YVDI IP NN+GK SI  ++WLLAR
Sbjct: 121 LLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMYWLLAR 180

Query: 185 MVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAE 231
            VL++RGT+    +WDVMVDLFF+R+PEE ++ EE          A 
Sbjct: 181 EVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEKEEAAAETAGVEDAA 227

Length = 249
>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal) Back     alignment and domain information
>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome Back     alignment and domain information
>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional Back     alignment and domain information
>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2 Back     alignment and domain information
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type Back     alignment and domain information
>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2 Back     alignment and domain information
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
PTZ00254249 40S ribosomal protein SA; Provisional 100.0
KOG0830254 consensus 40S ribosomal protein SA (P40)/Laminin r 100.0
TIGR01012196 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa 100.0
PRK04020204 rps2P 30S ribosomal protein S2; Provisional 100.0
COG0052252 RpsB Ribosomal protein S2 [Translation, ribosomal 100.0
PRK12311326 rpsB 30S ribosomal protein S2/unknown domain fusio 100.0
PRK05299258 rpsB 30S ribosomal protein S2; Provisional 100.0
TIGR01011225 rpsB_bact ribosomal protein S2, bacterial type. TI 100.0
CHL00067230 rps2 ribosomal protein S2 100.0
cd01425193 RPS2 Ribosomal protein S2 (RPS2), involved in form 100.0
PF00318211 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR0 100.0
KOG0832251 consensus Mitochondrial/chloroplast ribosomal prot 100.0
PRK12570296 N-acetylmuramic acid-6-phosphate etherase; Reviewe 95.86
cd05007257 SIS_Etherase N-acetylmuramic acid 6-phosphate ethe 95.1
PRK05441299 murQ N-acetylmuramic acid-6-phosphate etherase; Re 95.05
TIGR00274291 N-acetylmuramic acid 6-phosphate etherase. This pr 93.8
PRK00414192 gmhA phosphoheptose isomerase; Reviewed 91.89
TIGR03127179 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of 91.38
cd05005179 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI 91.33
PRK10892326 D-arabinose 5-phosphate isomerase; Provisional 91.19
PRK13938196 phosphoheptose isomerase; Provisional 90.43
PF13580138 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_ 90.19
cd05006177 SIS_GmhA Phosphoheptose isomerase is a member of t 90.15
PRK13936197 phosphoheptose isomerase; Provisional 90.08
PRK10886196 DnaA initiator-associating protein DiaA; Provision 89.82
PRK00331604 glucosamine--fructose-6-phosphate aminotransferase 88.87
PRK02947246 hypothetical protein; Provisional 88.34
PF1008797 DUF2325: Uncharacterized protein conserved in bact 87.84
PRK11302284 DNA-binding transcriptional regulator HexR; Provis 87.35
PRK15482285 transcriptional regulator MurR; Provisional 85.77
cd05710120 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISo 85.61
PRK13937188 phosphoheptose isomerase; Provisional 85.46
PRK11557278 putative DNA-binding transcriptional regulator; Pr 85.19
cd05013139 SIS_RpiR RpiR-like protein. RpiR contains a SIS (S 85.19
PRK14101638 bifunctional glucokinase/RpiR family transcription 84.47
TIGR00441154 gmhA phosphoheptose isomerase. Involved in lipopol 84.23
TIGR00393268 kpsF KpsF/GutQ family protein. This model describe 83.7
cd05008126 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repea 83.21
cd05014128 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5 81.62
PRK11382340 frlB fructoselysine-6-P-deglycase; Provisional 80.62
PRK08674337 bifunctional phosphoglucose/phosphomannose isomera 80.14
>PTZ00254 40S ribosomal protein SA; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.6e-86  Score=622.00  Aligned_cols=219  Identities=63%  Similarity=1.059  Sum_probs=212.9

Q ss_pred             CCccCCCcHHHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchh
Q 018448            8 APRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYG   87 (355)
Q Consensus         8 ~~~~l~~ke~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~   87 (355)
                      +++++++|++++++||+||+||||++|||+|++||||+|.||+|||||+|||++|++|+++|++++++++|+|||||+++
T Consensus         4 ~~~~~~~~~~~i~~lL~agvHlG~~~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~   83 (249)
T PTZ00254          4 GPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAIENPADVVVVSSRPYG   83 (249)
T ss_pred             CcccCCCCHHHHHHHHhcCceeccCcCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHH
Confidence            47899999999999999999999999999999999998778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecC
Q 018448           88 QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPA  167 (355)
Q Consensus        88 qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~  167 (355)
                      +++|+|||++||++||+|||+|||||||++.+|++||+|||+||+.|||||+||+++||||||||||||||++|||||||
T Consensus        84 ~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~  163 (249)
T PTZ00254         84 QRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPC  163 (249)
T ss_pred             HHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCCCcccCceeeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhHHhhhhhh
Q 018448          168 NNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAID  226 (355)
Q Consensus       168 NndS~~SI~Li~~lLareVL~~rGtis~~~~wev~pDLffyRdpeEie~ee~~~~~~~~  226 (355)
                      ||||.+||+||||+|+|+|+++||+++|+++|+|||||||||||||+|+||+++++.++
T Consensus       164 Ndds~~SI~li~~lLar~Vl~~rG~~~r~~~~~v~~d~f~~r~~~~~~~~~~~~~~~~~  222 (249)
T PTZ00254        164 NNRGKESIALMYWLLAREVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEKEEAAAETAG  222 (249)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhCccccCCCCCcCceeccccChhhhhhHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999887665444

>KOG0830 consensus 40S ribosomal protein SA (P40)/Laminin receptor 1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal) Back     alignment and domain information
>PRK04020 rps2P 30S ribosomal protein S2; Provisional Back     alignment and domain information
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK05299 rpsB 30S ribosomal protein S2; Provisional Back     alignment and domain information
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type Back     alignment and domain information
>CHL00067 rps2 ribosomal protein S2 Back     alignment and domain information
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome Back     alignment and domain information
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed Back     alignment and domain information
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase Back     alignment and domain information
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed Back     alignment and domain information
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase Back     alignment and domain information
>PRK00414 gmhA phosphoheptose isomerase; Reviewed Back     alignment and domain information
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase Back     alignment and domain information
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI) Back     alignment and domain information
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional Back     alignment and domain information
>PRK13938 phosphoheptose isomerase; Provisional Back     alignment and domain information
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D Back     alignment and domain information
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily Back     alignment and domain information
>PRK13936 phosphoheptose isomerase; Provisional Back     alignment and domain information
>PRK10886 DnaA initiator-associating protein DiaA; Provisional Back     alignment and domain information
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed Back     alignment and domain information
>PRK02947 hypothetical protein; Provisional Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional Back     alignment and domain information
>PRK15482 transcriptional regulator MurR; Provisional Back     alignment and domain information
>cd05710 SIS_1 A subgroup of the SIS domain Back     alignment and domain information
>PRK13937 phosphoheptose isomerase; Provisional Back     alignment and domain information
>PRK11557 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>cd05013 SIS_RpiR RpiR-like protein Back     alignment and domain information
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional Back     alignment and domain information
>TIGR00441 gmhA phosphoheptose isomerase Back     alignment and domain information
>TIGR00393 kpsF KpsF/GutQ family protein Back     alignment and domain information
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD) Back     alignment and domain information
>cd05014 SIS_Kpsf KpsF-like protein Back     alignment and domain information
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional Back     alignment and domain information
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
3iz6_A305 Localization Of The Small Subunit Ribosomal Protein 1e-108
3bch_A253 Crystal Structure Of The Human Laminin Receptor Pre 2e-77
2zkq_b295 Structure Of A Mammalian Ribosomal 40s Subunit With 3e-76
3zey_C277 High-resolution Cryo-electron Microscopy Structure 5e-66
3izb_A252 Localization Of The Small Subunit Ribosomal Protein 4e-62
3jyv_B193 Structure Of The 40s Rrna And Proteins And PE TRNA 2e-59
1s1h_B185 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 6e-58
2xzm_B241 Crystal Structure Of The Eukaryotic 40s Ribosomal S 5e-55
3j20_B202 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-40
1vi6_A208 Crystal Structure Of Ribosomal Protein S2p Length = 1e-33
1vi5_A208 Crystal Structure Of Ribosomal Protein S2p Length = 3e-32
1x18_E231 Contact Sites Of Era Gtpase On The Thermus Thermoph 2e-07
1i94_B255 Crystal Structures Of The Small Ribosomal Subunit W 3e-07
1fjg_B256 Structure Of The Thermus Thermophilus 30s Ribosomal 3e-07
2e5l_B227 A Snapshot Of The 30s Ribosomal Subunit Capturing M 3e-07
3fic_B235 T. Thermophilus 70s Ribosome In Complex With Mrna, 4e-07
1pns_B234 Crystal Structure Of A Streptomycin Dependent Ribos 4e-07
>pdb|3IZ6|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 305 Back     alignment and structure 
Iteration: 1

 Score =  387 bits (994), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/198 (92%), Positives = 192/198 (96%)
Query: 12  LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVA 71
           LSQ+E DIQMMLAA+VHLGTKNCDFQMERYV+KRR DGIYIINLGKTWEKLQ+AARVIVA
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 72  IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDP 131
           IENP DIIVQSARPYGQRAVLKFA+YT AHAIAGRHTPGTFTNQ+QTSF+EPRLLILTDP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 132 RTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191
           RTDHQPIKE+ALGNIPTIAFCDTDSPMRYVDIGIPANNKGK SIGCLFWLLARMVLQMRG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 192 TIRPGHKWDVMVDLFFYR 209
           TI PGHKWDVMVDLFFYR
Sbjct: 192 TILPGHKWDVMVDLFFYR 209
>pdb|3BCH|A Chain A, Crystal Structure Of The Human Laminin Receptor Precursor Length = 253 Back     alignment and structure
>pdb|2ZKQ|BB Chain b, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 295 Back     alignment and structure
>pdb|3ZEY|C Chain C, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 277 Back     alignment and structure
>pdb|3IZB|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 252 Back     alignment and structure
>pdb|3JYV|B Chain B, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 193 Back     alignment and structure
>pdb|1S1H|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 185 Back     alignment and structure
>pdb|2XZM|B Chain B, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 241 Back     alignment and structure
>pdb|3J20|B Chain B, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 202 Back     alignment and structure
>pdb|1VI6|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208 Back     alignment and structure
>pdb|1VI5|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208 Back     alignment and structure
>pdb|1X18|E Chain E, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 231 Back     alignment and structure
>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 255 Back     alignment and structure
>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 256 Back     alignment and structure
>pdb|2E5L|B Chain B, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via The Shine- Dalgarno Interaction Length = 227 Back     alignment and structure
>pdb|3FIC|B Chain B, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 235 Back     alignment and structure
>pdb|1PNS|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 234 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
3iz6_A305 40S ribosomal protein SA (S2P); eukaryotic ribosom 1e-113
3u5c_A252 40S ribosomal protein S0-A; translation, ribosome, 1e-113
2xzm_B241 RPS0E; ribosome, translation; 3.93A {Tetrahymena t 1e-112
2zkq_b295 40S ribosomal protein SA; protein-RNA complex, 40S 1e-109
3bch_A253 40S ribosomal protein SA; laminin receptor, P40 ri 1e-105
1vi6_A208 30S ribosomal protein S2P; structural genomics, ri 1e-102
3bbn_B231 Ribosomal protein S2; small ribosomal subunit, spi 5e-06
3r8n_B218 30S ribosomal protein S2; protein biosynthesis, RN 1e-05
2vqe_B256 30S ribosomal protein S2; tRNA-binding, rRNA-bindi 2e-05
2vqe_B256 30S ribosomal protein S2; tRNA-binding, rRNA-bindi 7e-05
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 Back     alignment and structure
 Score =  331 bits (849), Expect = e-113
 Identities = 211/299 (70%), Positives = 225/299 (75%), Gaps = 7/299 (2%)

Query: 1   MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWE 60
           MA     A R LSQ+E DIQMMLAA+VHLGTKNCDFQMERYV+KRR DGIYIINLGKTWE
Sbjct: 1   MAAEGGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWE 60

Query: 61  KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF 120
           KLQ+AARVIVAIENP DIIVQSARPYGQRAVLKFA+YT AHAIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKE+ALGNIPTIAFCDTDSPMRYVDIGIPANNKGK SIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFW 180

Query: 181 LLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETA-AIDYATAEYNTNLTSG 239
           LLARMVLQMRGTI PGHKWDVMVDLFFYR+PEE K+ EEEE A       A       + 
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAA 240

Query: 240 DQWPSQIADGGWAGGEVQKPIPGVPYFPEAAPAAT------VPLGGDGWDAVPAPPMAA 292
           D W  +      A         G  +    APAA        P  G    + P P  A 
Sbjct: 241 DTWGGEWGTDAAAQPAAIPAQAGADWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAAAP 299
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252 Back     alignment and structure
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Length = 241 Back     alignment and structure
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 295 Back     alignment and structure
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Length = 253 Back     alignment and structure
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Length = 208 Back     alignment and structure
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 231 Back     alignment and structure
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Length = 256 Back     alignment and structure
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Length = 256 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
3iz6_A305 40S ribosomal protein SA (S2P); eukaryotic ribosom 100.0
3u5c_A252 40S ribosomal protein S0-A; translation, ribosome, 100.0
2zkq_b295 40S ribosomal protein SA; protein-RNA complex, 40S 100.0
3bch_A253 40S ribosomal protein SA; laminin receptor, P40 ri 100.0
2xzm_B241 RPS0E; ribosome, translation; 3.93A {Tetrahymena t 100.0
3j20_B202 30S ribosomal protein S2P; archaea, archaeal, KINK 100.0
1vi6_A208 30S ribosomal protein S2P; structural genomics, ri 100.0
2vqe_B256 30S ribosomal protein S2; tRNA-binding, rRNA-bindi 100.0
3bbn_B231 Ribosomal protein S2; small ribosomal subunit, spi 100.0
3r8n_B218 30S ribosomal protein S2; protein biosynthesis, RN 100.0
2yva_A196 DNAA initiator-associating protein DIAA; intermole 95.3
1m3s_A186 Hypothetical protein YCKF; structural genomics, PS 94.83
2i2w_A212 Phosphoheptose isomerase; lipopolysaccharide biosy 94.15
1vim_A200 Hypothetical protein AF1796; structural genomics, 93.63
1nri_A306 Hypothetical protein HI0754; structural genomics, 93.46
3etn_A220 Putative phosphosugar isomerase involved in capsu 93.4
1x92_A199 APC5045, phosphoheptose isomerase; midwest centre 92.99
1jeo_A180 MJ1247, hypothetical protein MJ1247; RUMP pathway, 92.93
2xbl_A198 Phosphoheptose isomerase; capsule; HET: M7P PGE PG 92.71
3trj_A201 Phosphoheptose isomerase; lipopolysaccharide biosy 92.19
3fxa_A201 SIS domain protein; structural genomics, joint cen 91.95
3sho_A187 Transcriptional regulator, RPIR family; structural 91.84
2xhz_A183 KDSD, YRBH, arabinose 5-phosphate isomerase; lipop 91.03
2a3n_A355 Putative glucosamine-fructose-6-phosphate aminotr; 90.24
3knz_A366 Putative sugar binding protein; structural genomic 89.77
1tk9_A188 Phosphoheptose isomerase 1; lipopolysaccharide bio 89.11
2aml_A373 SIS domain protein; 46906266, LMO0035 protein, str 88.2
3jx9_A170 Putative phosphoheptose isomerase; YP_001815198.1, 86.76
3g68_A352 Putative phosphosugar isomerase; SIS domain, doubl 86.16
3cvj_A243 Putative phosphoheptose isomerase; rossman fold, 3 85.76
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
Probab=100.00  E-value=1.1e-96  Score=708.06  Aligned_cols=277  Identities=78%  Similarity=1.260  Sum_probs=239.6

Q ss_pred             CCCCCCCCCccCCCcHHHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018448            1 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIV   80 (355)
Q Consensus         1 ~~~~~~~~~~~l~~ke~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILf   80 (355)
                      ||+.++..+++|+|||+++++||+||+||||++|||+|++||||+|+||||||||+|||++|++|+++|++++|+++|||
T Consensus         1 ~~~~~~~~~~~l~~ke~dv~kLLaAGvH~Gt~~wNpkM~pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i~~~~~ILf   80 (305)
T 3iz6_A            1 MAAEGGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIV   80 (305)
T ss_dssp             CCSCCCSSCCCCSSCCSCCCCHHHHHHSSCBSCCCTTTTTSCCEEETTTEEECCHHHHHHHHHHHHHHHHHTTSSCCEEE
T ss_pred             CCcccccccccccccHHHHHHHHHcCeeccCCcCCcCccccEEeeecCCceEECHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            88877778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCC
Q 018448           81 QSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRY  160 (355)
Q Consensus        81 VsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~  160 (355)
                      ||||+++|++|+|||+++|++||++||+|||||||+|.+|++||+|||+||+.|||+|+||+++||||||||||||||++
T Consensus        81 VgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtIALvDTnsdp~~  160 (305)
T 3iz6_A           81 QSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY  160 (305)
T ss_dssp             ECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTSCGGG
T ss_pred             EeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCcccchHHHHHHHHcCCCEEEEEcCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecCCCCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhHHhh--hhhhhh-hhhhccCCC
Q 018448          161 VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEET--AAIDYA-TAEYNTNLT  237 (355)
Q Consensus       161 VDypIP~NndS~~SI~Li~~lLareVL~~rGtis~~~~wev~pDLffyRdpeEie~ee~~~~--~~~~~~-~~~~~~~~~  237 (355)
                      |||+|||||||.+||+||+|+|+++|+++||++||+|||||||||||||||||+|||||+++  ++++|. .++|..  .
T Consensus       161 VDy~IP~NDds~rSI~Li~~lLA~aVl~~rgtis~~~~w~v~pdl~fyrdpee~ek~~~~~~~~~~~~~~~~~~~~~--~  238 (305)
T 3iz6_A          161 VDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAA--P  238 (305)
T ss_dssp             CSEEEESCCSSTHHHHHHHHHHHHHHHHTTSSCCSCCCCCCCCSSSCCCCCCCSCSHHHHHHHHHHHHHHHSCCSSC--C
T ss_pred             cceEEeCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCcccCceeeeeeChhhhhhhhhhhccccccchhhhhhhcc--c
Confidence            99999999999999999999999999999999999999999999999999999999999877  667774 447743  3


Q ss_pred             CCCCCCCcccCCCCCCCCCC--CCCCCC--CCCCCCCCCCcccCCCCCCCCCCCCc
Q 018448          238 SGDQWPSQIADGGWAGGEVQ--KPIPGV--PYFPEAAPAATVPLGGDGWDAVPAPP  289 (355)
Q Consensus       238 ~~~~~~~~~~~~~w~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (355)
                      ++++|++     +|++++++  +++|++  +.|+ ++++   ++ ++|||+|++|.
T Consensus       239 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~~~~~  284 (305)
T 3iz6_A          239 AADTWGG-----EWGTDAAAQPAAIPAQAGADWT-AAPA---PA-AGGWDTAAAPA  284 (305)
T ss_dssp             CSSHHHH-----HHHHHHHHHHHCSCC-----------------------------
T ss_pred             ccccccc-----ccccccccccCCCCCCCCCCcc-cccC---cc-CCCcccCCCCC
Confidence            6779954     79998774  234444  3485 3332   22 77888875443
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Back     alignment and structure
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Back     alignment and structure
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Back     alignment and structure
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Back     alignment and structure
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Back     alignment and structure
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli} Back     alignment and structure
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A Back     alignment and structure
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A Back     alignment and structure
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3 Back     alignment and structure
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3 Back     alignment and structure
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A Back     alignment and structure
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3 Back     alignment and structure
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A Back     alignment and structure
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp} Back     alignment and structure
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str} Back     alignment and structure
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus} Back     alignment and structure
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli} Back     alignment and structure
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium} Back     alignment and structure
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp} Back     alignment and structure
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3 Back     alignment and structure
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile} Back     alignment and structure
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d1vi6a_193 c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Arch 3e-59
d2uubb1234 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus 1e-43
d2gy9b1218 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escheric 2e-37
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  187 bits (476), Expect = 3e-59
 Identities = 65/187 (34%), Positives = 109/187 (58%), Gaps = 1/187 (0%)

Query: 19  IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDI 78
               LAA VH+GT+     M++++FK R DG+Y++++ K  E++++AA+  ++   P  I
Sbjct: 8   PDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAK-FLSRYEPSKI 66

Query: 79  IVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPI 138
           ++ +AR Y  + V  F+K   +  I GR  PGT TN M + + EP ++ + DP  D Q +
Sbjct: 67  LLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAV 126

Query: 139 KEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHK 198
            EA    IP +A CD+++    VD+ IP NNKG+ ++  ++WLLAR + ++RG       
Sbjct: 127 SEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQDFTYSI 186

Query: 199 WDVMVDL 205
            D   +L
Sbjct: 187 EDFEAEL 193
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d1vi6a_193 Ribosomal protein S2 {Archaeon Archaeoglobus fulgi 100.0
d2uubb1234 Ribosomal protein S2 {Thermus thermophilus [TaxId: 100.0
d2gy9b1218 Ribosomal protein S2 {Escherichia coli [TaxId: 562 100.0
d1x94a_191 Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T 95.75
d1tk9a_188 Phosphoheptose isomerase GmhA1 {Campylobacter jeju 94.95
d1x92a_194 Phosphoheptose isomerase GmhA1 {Pseudomonas aerugi 92.79
d1nria_248 Hypothetical protein HI0754 {Haemophilus influenza 92.19
d1m3sa_186 Hypothetical protein YckF {Bacillus subtilis [TaxI 92.09
d1ir6a_385 Exonuclease RecJ {Thermus thermophilus [TaxId: 274 89.08
d1jeoa_177 Probable 3-hexulose-6-phosphate isomerase MJ1247 { 87.82
d1vima_192 Hypothetical protein AF1796 {Archaeon Archaeoglobu 87.33
d2ji7a1175 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 80.57
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=8.4e-62  Score=440.51  Aligned_cols=176  Identities=36%  Similarity=0.681  Sum_probs=171.3

Q ss_pred             HHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH
Q 018448           17 ADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK   96 (355)
Q Consensus        17 ~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~   96 (355)
                      .++++||+||+|+||++++++|++||||+|+||+|||||++|+++|++|++++..+ ++++|||||||++++++|+++|+
T Consensus         6 v~i~~ll~agvH~G~~~~~~~M~~YIy~~r~ngi~IIdL~kT~~~L~~A~~~l~~~-~~~~ILfVgtk~~~~~~v~~~A~   84 (193)
T d1vi6a_           6 VPPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSK   84 (193)
T ss_dssp             SCHHHHHHHTTTBCCSCCCTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHH
T ss_pred             eeHHHHHHhCeeeCCCcCCCCCccccccccCCCeEEeeHHHHHHHHHHHHHHHHHh-ccCceEEeecccchHHHHHHHHH
Confidence            47899999999999999999999999999989999999999999999999999877 78999999999999999999999


Q ss_pred             HcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHH
Q 018448           97 YTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIG  176 (355)
Q Consensus        97 ~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~  176 (355)
                      ++|++||++||+||+|||+++..+++|++|||+||..|++||+||+++||||||||||||||++|||||||||||.+||+
T Consensus        85 ~~g~~~v~~RWlgG~LTN~~~~~~~~P~~liv~dp~~d~~ai~Ea~~l~IPvI~ivDTn~~p~~vdy~IP~Ndds~~Si~  164 (193)
T d1vi6a_          85 VVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALA  164 (193)
T ss_dssp             HHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHH
T ss_pred             hcCCCcccccccCCcccchHHhhcccceEEEEEcCcchHHHHHHHHHcCCCeeeEeccCCCCcccceEEeCCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 018448          177 CLFWLLARMVLQMRGTI  193 (355)
Q Consensus       177 Li~~lLareVL~~rGti  193 (355)
                      |++|+|+++|+++||..
T Consensus       165 li~~~l~~ai~~~k~~~  181 (193)
T d1vi6a_         165 IVYWLLAREIAKIRGQD  181 (193)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCCc
Confidence            99999999999999863
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure