Citrus Sinensis ID: 018454

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MAKTKEKKVNVSGKPKHSLDANRTDGKSGSRSASTVRRLNMYKTRPKRDRKGKVLQHEFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFGEW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHcccccccHHHHHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHccccccccccccccEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccEEEccccccccccccEccccccccccEEEcHHHHHHHHHHHHHHHccccEEEEEccccccHHccccccccccEEEEcccHHHHcccHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHcccEEEccccccHHHHHHHEHEEEEEcc
Coil and Loop (DISEMBL)
maktkekkvnvsgkpkhsldanrtdgksgsrsaSTVRRLNMyktrpkrdrkgkvlqhefqskelpntriqpdrrwfgntrcvNQKQLEFFREELQSHMSSSYNVILrekklpfsllNDHQKQARVHlldtepfqdafgpkgkrkrpkllASDYESLVKradgsqdafeqkndastsaegvegdgfRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLdardpqgtrchHLERHLKEHCKHKHMILLLNkcdlvpawatkGWLRVLSkeypslafhasinksfgkgSLLSVLRQFARLKSDKQAISVGfvgypnvgkssvintlrtknviLFFPASVVWYWFYCQLLFYFGEW
Flexible Loop (DISEMBL)
maktkekkvnvsgkpkhsldanrtdgksgsrsastvrrlnmyktrpkrdrkgkvlqhefqskelpntriqpdrrwfGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLdtepfqdafgpkgkrkrpkLLASDYESLVKradgsqdafeqkndastsaegvegdgfRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFvgypnvgkssvINTLRTKNVILFFPASVVWYWFYCQLLFYFGEW
Low Complexity Region (SEG)
MAKTKEKKVNVSGKPKHSLDANRTDGKSGSRSASTVRRLNMYKTRPKRDRKGKVLQHEFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFGEW
Disordered region (IsUnstruct)
************************************************************************RRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDH****RVHLL********************************************************FRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG**
Disordered Region (DISOPRED)
**********************************TVRRLNMYKTRPKRDR**KV***************Q*DRRWFGNTRCVNQKQL***************************************************************************************************************SKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSV*R********KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFGEW
Disordered Region (DISEMBL)
**********************************TVRRLNMYKTRP*********QHEFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRA********************EGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFGEW
Disordered Region (DISPRO)
****************************GSRSASTVRRLNMYKTRPKRDRKGKVLQHEFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKND***********GFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFGEW
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKTKEKKVNVSGKPKHSLDANRTDGKSGSRSASTVRRLNMYKTRPKRDRKGKVLQHEFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFGEW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
Q13823	731	Nucleolar GTP-binding pro	yes	no	0.974	0.473	0.492	6e-96
Q99LH1	728	Nucleolar GTP-binding pro	yes	no	0.974	0.475	0.495	1e-95
O14236	537	Nucleolar GTP-binding pro	yes	no	0.921	0.608	0.509	3e-93
Q6C036	509	Nucleolar GTP-binding pro	yes	no	0.912	0.636	0.509	4e-91
P53742	486	Nucleolar GTP-binding pro	yes	no	0.929	0.679	0.495	3e-89
Q75DA4	502	Nucleolar GTP-binding pro	yes	no	0.929	0.657	0.482	6e-88
Q6FWS1	494	Nucleolar GTP-binding pro	yes	no	0.929	0.668	0.475	5e-87
Q9C3Z4	483	Nucleolar GTP-binding pro	N/A	no	0.833	0.612	0.528	1e-86
Q6CSP9	513	Nucleolar GTP-binding pro	yes	no	0.929	0.643	0.482	2e-86
J9VQ03	720	Nucleolar GTP-binding pro	N/A	no	0.892	0.440	0.466	4e-78

>sp|Q13823|NOG2_HUMAN Nucleolar GTP-binding protein 2 OS=Homo sapiens GN=GNL2 PE=1 SV=1

 Score =  350 bits (899), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 176/357 (49%), Positives = 242/357 (67%), Gaps = 11/357 (3%)

Query: 1   MAKTKEKKVNVSGKPKHSLDANRTDGKSGS--RSASTVRRLNMYKTRPKRDRKGKVLQH- 57
           M K K K  +     K S + +R  G  G   R  +T+RRLNMY+ + +R+ +GK+++  
Sbjct: 1   MVKPKYKGRSTINPSKASTNPDRVQGAGGQNMRDRATIRRLNMYRQKERRNSRGKIIKPL 60

Query: 58  EFQSKELPNT--RIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSL 115
           ++QS     T  R++P+ +WFGNTR + Q  L+ F+EE+ + M   Y V++++ KLP SL
Sbjct: 61  QYQSTVASGTVARVEPNIKWFGNTRVIKQSSLQKFQEEMDTVMKDPYKVVMKQSKLPMSL 120

Query: 116 LNDHQK--QARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDA 173
           L+D  +    +VH+LDTE F+  FGPK +RKRP L ASD +SL++ A+ S ++++Q  D 
Sbjct: 121 LHDRIRPHNLKVHILDTESFETTFGPKSQRKRPNLFASDMQSLIENAEMSTESYDQGKDR 180

Query: 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL 233
               E     G R+  +  +++KGQSKRIWGELYKVIDSSDVVVQVLDARDP GTR  H+
Sbjct: 181 DLVTEDT---GVRNEAQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHI 237

Query: 234 ERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSV 293
           E +LK+    KH+I +LNKCDLVP WATK W+ VLS++YP+LAFHAS+   FGKG+ + +
Sbjct: 238 ETYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQL 297

Query: 294 LRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
           LRQF +L +DK+ ISVGF+GYPNVGKSSVINTLR+K V    P A     W Y  L+
Sbjct: 298 LRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLM 354

GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation.
Homo sapiens (taxid: 9606)

>sp|Q99LH1|NOG2_MOUSE Nucleolar GTP-binding protein 2 OS=Mus musculus GN=Gnl2 PE=2 SV=2

 Score =  350 bits (897), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/357 (49%), Positives = 241/357 (67%), Gaps = 11/357 (3%)

Query: 1   MAKTKEKKVNVSGKPKHSLDANRTDGKSGS--RSASTVRRLNMYKTRPKRDRKGKVLQH- 57
           M K K K  +   +   S + +R  G  G   R   T+RRLNMY+ + +R+ +GKV++  
Sbjct: 1   MVKPKYKGRSTINRSAASTNPDRVQGAGGQNMRDRGTIRRLNMYRQKERRNSRGKVIKPL 60

Query: 58  EFQSKELPNT--RIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSL 115
           ++QS     T  R++P+ +WFGNTR + Q  L+ F+EE+   M   Y V++++ KLP SL
Sbjct: 61  QYQSTVASGTVARVEPNIKWFGNTRVIKQASLQKFQEEMDKVMKDPYKVVMKQSKLPMSL 120

Query: 116 LND--HQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDA 173
           L+D      A+VH+LDTE F+  FGPK +RKRP L ASD +SL++ A+ S ++++Q  D 
Sbjct: 121 LHDRIQPHNAKVHILDTESFESTFGPKSQRKRPNLFASDMQSLLENAEMSTESYDQGKDR 180

Query: 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL 233
                 +E  G R+  +  +++KGQSKRIWGELYKVIDSSDVVVQVLDARDP GTR  H+
Sbjct: 181 DLV---MEDTGVRNEAQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHI 237

Query: 234 ERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSV 293
           E +LK+    KH+I +LNKCDLVP WATK W+ VLS++YP+LAFHAS+   FGKG+ + +
Sbjct: 238 EAYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQL 297

Query: 294 LRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
           LRQF +L +DK+ ISVGF+GYPNVGKSSVINTLR+K V    P A     W Y  L+
Sbjct: 298 LRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLM 354

GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation.

Mus musculus (taxid: 10090)

>sp|O14236|NOG2_SCHPO Nucleolar GTP-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nog2 PE=1 SV=1

 Score =  342 bits (877), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 168/330 (50%), Positives = 221/330 (66%), Gaps = 3/330 (0%)

Query: 23  RTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTR 80
           R  G++  R+A  V R+NMY+  + K +  G++++  EFQS E+P  RIQPDRRWF NTR
Sbjct: 25  RVKGENFYRNAKDVARVNMYRGGKAKYNAAGELVRAAEFQSSEVPKARIQPDRRWFNNTR 84

Query: 81  CVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPK 140
            + Q  L  FRE +   ++  Y V+LR  KLP SLL ++ +  +V +L++EPF++ FGPK
Sbjct: 85  VIAQPTLTQFREAMGQKLNDPYQVLLRRNKLPMSLLQENTEIPKVRVLESEPFENTFGPK 144

Query: 141 GKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSK 200
            +RKRPK+       L K +D  Q+A+E+K +    A   E D      R  +F KGQSK
Sbjct: 145 SQRKRPKISFDSVAELAKESDEKQNAYEEKIEERILANPDESDDVMLAARDAIFSKGQSK 204

Query: 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA 260
           RIW ELYKVIDSSDV++QVLDARDP GTRC  +ER+L+    HKHMIL+LNK DLVP   
Sbjct: 205 RIWNELYKVIDSSDVLIQVLDARDPVGTRCGTVERYLRNEASHKHMILVLNKVDLVPTSV 264

Query: 261 TKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKS 320
              W+++L+KEYP++AFHASIN SFGKGSL+ +LRQFA L SDK+ ISVG +G+PN GKS
Sbjct: 265 AAAWVKILAKEYPTIAFHASINNSFGKGSLIQILRQFASLHSDKKQISVGLIGFPNAGKS 324

Query: 321 SVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
           S+INTLR K V    P       W Y  L+
Sbjct: 325 SIINTLRKKKVCNVAPIPGETKVWQYVALM 354

GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6C036|NOG2_YARLI Nucleolar GTP-binding protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NOG2 PE=3 SV=1

 Score =  335 bits (858), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 168/330 (50%), Positives = 219/330 (66%), Gaps = 6/330 (1%)

Query: 23  RTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQHE-FQSKELPNTRIQPDRRWFGNTR 80
           R  G +  R A  V++L+MYK  R K + +G+ +Q   FQSKE+PN RI P+RRWFGNTR
Sbjct: 25  RVKGVNFYRDAKKVKKLSMYKEGRAKHNARGEEVQAATFQSKEIPNARIDPNRRWFGNTR 84

Query: 81  CVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPK 140
            + Q  L  FRE L      SY V+LR+ KLP SLL ++ K  +V +++TE + + FGPK
Sbjct: 85  VIAQDALNHFREALGETKRDSYQVLLRQNKLPMSLLEENNKIPQVKVVETESYANTFGPK 144

Query: 141 GKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSK 200
            +RK+P+L   D+  L   AD SQ  FE K +   S +    DG+    +  +F KGQSK
Sbjct: 145 AQRKKPQLAVGDFAELASAADESQQDFEAKKEEDNSWKV---DGWSQEAKEAIFHKGQSK 201

Query: 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA 260
           RIW ELYKVIDSSDVV+ VLDARDP GTRC  +E+++K+   HKH+I +LNKCDLVP W 
Sbjct: 202 RIWNELYKVIDSSDVVIHVLDARDPLGTRCTSVEQYIKKEAPHKHLIFVLNKCDLVPTWV 261

Query: 261 TKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKS 320
              W++ LS++YP+LAFHASI  SFGKGSL+ +LRQ++ L  D+Q ISVGF+GYPN GKS
Sbjct: 262 AAAWVKHLSQDYPTLAFHASITNSFGKGSLIQLLRQYSALHPDRQQISVGFIGYPNTGKS 321

Query: 321 SVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
           S+INTLR K V    P       W Y  L+
Sbjct: 322 SIINTLRKKKVCKTAPIPGETKVWQYITLM 351

GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|P53742|NOG2_YEAST Nucleolar GTP-binding protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOG2 PE=1 SV=1

 Score =  328 bits (842), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 169/341 (49%), Positives = 223/341 (65%), Gaps = 11/341 (3%)

Query: 20  DAN-RTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWF 76
           D N R  G++  R +  V+ LNMY + +  R++KG +++   FQ   +P+ R+QPDRRWF
Sbjct: 19  DGNLRVKGENFYRDSKRVKFLNMYTSGKEIRNKKGNLIRAASFQDSTIPDARVQPDRRWF 78

Query: 77  GNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLN--DHQKQARVHLLDTEPFQ 134
           GNTR ++Q  L+ FR  L      +Y V+LR  KLP SLL   D  +  +  +LDTE + 
Sbjct: 79  GNTRVISQDALQHFRSALGETQKDTYQVLLRRNKLPMSLLEEKDADESPKARILDTESYA 138

Query: 135 DAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKN--DASTSAEGVEGD---GFRDLV 189
           DAFGPK +RKRP+L AS+ E LVK  +     +E+K   DA+    G + D   G+    
Sbjct: 139 DAFGPKAQRKRPRLAASNLEDLVKATNEDITKYEEKQVLDATLGLMGNQEDKENGWTSAA 198

Query: 190 RHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILL 249
           +  +F KGQSKRIW ELYKVIDSSDVV+ VLDARDP GTRC  +E ++K+   HKH+I +
Sbjct: 199 KEAIFSKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLIYV 258

Query: 250 LNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISV 309
           LNKCDLVP W    W++ LSKE P+LAFHASI  SFGKGSL+ +LRQF++L +D++ ISV
Sbjct: 259 LNKCDLVPTWVAAAWVKHLSKERPTLAFHASITNSFGKGSLIQLLRQFSQLHTDRKQISV 318

Query: 310 GFVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
           GF+GYPN GKSS+INTLR K V    P       W Y  L+
Sbjct: 319 GFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLM 359

GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q75DA4|NOG2_ASHGO Nucleolar GTP-binding protein 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NOG2 PE=3 SV=1

 Score =  324 bits (831), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 164/340 (48%), Positives = 219/340 (64%), Gaps = 10/340 (2%)

Query: 20  DAN-RTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWF 76
           D N R  G++  R    V+ LNMYK  +  R+ KG +++    QS ++P  R+QPDRRWF
Sbjct: 19  DGNLRVKGENFYRDGKRVKFLNMYKGGKSIRNAKGDLIRAAPLQSTDVPTARVQPDRRWF 78

Query: 77  GNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLN--DHQKQARVHLLDTEPFQ 134
           GNTR ++Q  L+ FR+ L    + SY V+LR  KLP SLL   D  +     ++DTEP+ 
Sbjct: 79  GNTRVISQDALQHFRDALGDKKNDSYQVLLRRNKLPMSLLEEKDTSESPTAKIIDTEPYG 138

Query: 135 DAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTS----AEGVEGDGFRDLVR 190
             FGPK +RK+P++ A+  E L K  D     +E+K +  ++    A   + DG+  + +
Sbjct: 139 ATFGPKAQRKKPRVAAASLEDLAKATDSDSQKYEEKKELDSTLGLMAATEQEDGWSQVAK 198

Query: 191 HTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLL 250
             +F KGQSKRIW ELYKVIDSSDVV+ VLDARDP GTRC  +E ++K+   HKH+I +L
Sbjct: 199 EAIFHKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLIYVL 258

Query: 251 NKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVG 310
           NKCDLVP W    W++ LSK+ P+LAFHASI  SFGKGSL+ +LRQF++L  D+Q ISVG
Sbjct: 259 NKCDLVPTWLAAAWVKHLSKDRPTLAFHASITNSFGKGSLIQLLRQFSQLHKDRQQISVG 318

Query: 311 FVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
           F+GYPN GKSS+INTLR K V    P       W Y  L+
Sbjct: 319 FIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLM 358

GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6FWS1|NOG2_CANGA Nucleolar GTP-binding protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOG2 PE=3 SV=1

 Score =  321 bits (823), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 162/341 (47%), Positives = 224/341 (65%), Gaps = 11/341 (3%)

Query: 20  DAN-RTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWF 76
           D N R  G++  R +  V+ LNMYK+ +  +++ G V++  ++Q   +P+ R+QPDRRWF
Sbjct: 19  DGNIRVKGENFYRDSKRVQFLNMYKSGKAIKNKHGDVIRAADYQDTTIPDARVQPDRRWF 78

Query: 77  GNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLN--DHQKQARVHLLDTEPFQ 134
           GNTR ++Q  L+ FR+ L      +Y V+LR  KLP SLL+  D  +  R  +L+TE F 
Sbjct: 79  GNTRVISQDALQHFRDALGETQKDTYQVLLRRNKLPMSLLDEKDSTESPRARILETESFD 138

Query: 135 DAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKND--ASTSAEGVEGD---GFRDLV 189
             FGPK +RK+P++ AS  E LV+  +     +E+K +  A+    G + D   G+  + 
Sbjct: 139 QTFGPKAQRKKPRVAASSLEELVQATEEENKTYEEKEELKATLGLMGKQEDEENGWTQVT 198

Query: 190 RHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILL 249
           +  +F KGQSKRIW ELYKVIDSSDVV+ VLDARDP GTRC  +E ++K+   HKH+I +
Sbjct: 199 KEAIFSKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLIYV 258

Query: 250 LNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISV 309
           LNKCDLVP W    W++ LSK+ P+LAFHASI  SFGKGSL+ +LRQF++L +D++ ISV
Sbjct: 259 LNKCDLVPTWVAAAWVKHLSKDRPTLAFHASITNSFGKGSLIQLLRQFSQLHTDRKQISV 318

Query: 310 GFVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
           GF+GYPN GKSS+INTLR K V    P       W Y  L+
Sbjct: 319 GFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLM 359

GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q9C3Z4|NOG2_PNECA Nucleolar GTP-binding protein 2 OS=Pneumocystis carinii GN=NOG2 PE=2 SV=1

 Score =  320 bits (820), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 160/303 (52%), Positives = 213/303 (70%), Gaps = 7/303 (2%)

Query: 31  RSASTVRRLNMYKT-RPKRDRKGKVL-QHEFQSKELPNTRIQPDRRWFGNTRCVNQKQLE 88
           R A  VR +N+ K+ + KR++ GK++ Q EFQSK++ + RIQP RRWF NTR ++Q  L 
Sbjct: 20  RDAKKVRWINLLKSGKAKRNKSGKIIKQGEFQSKDVQDARIQPYRRWFSNTRVISQDVLN 79

Query: 89  FFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKL 148
            FRE     ++    V+L++ KLP SLL +  K  + +++D EPF D FG K  RKR KL
Sbjct: 80  MFRESFAEKLNDPCKVLLKQNKLPMSLLMEPTKTRKANIIDIEPFDDTFGKKSXRKRAKL 139

Query: 149 LASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYK 208
            AS  E+L   A  S + + +KN   +  E V+ +  +      +F KG SKRIW ELYK
Sbjct: 140 YASSIENLSNFAFESYENYIKKN---SEYENVDKNIQKSF--EAIFSKGTSKRIWNELYK 194

Query: 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL 268
            IDSSDV++Q+LDAR+P GTRC H+E +LK+   HKHMILLLNKCDL+P W T+ W++ L
Sbjct: 195 XIDSSDVIIQLLDARNPLGTRCKHVEEYLKKEKPHKHMILLLNKCDLIPTWCTREWIKQL 254

Query: 269 SKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328
           SKEYP+LAFHASIN  FGKGSL+ +LRQF++L S+++ ISVGF+GYPN GKSSVINTLR+
Sbjct: 255 SKEYPTLAFHASINNPFGKGSLIQLLRQFSKLHSNRRQISVGFIGYPNTGKSSVINTLRS 314

Query: 329 KNV 331
           K V
Sbjct: 315 KKV 317

GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation.

Pneumocystis carinii (taxid: 4754)

>sp|Q6CSP9|NOG2_KLULA Nucleolar GTP-binding protein 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NOG2 PE=3 SV=1

 Score =  319 bits (818), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 164/340 (48%), Positives = 210/340 (61%), Gaps = 10/340 (2%)

Query: 20  DAN-RTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWF 76
           D N R  G++  R    V+ LNMYK  R  R+ KG +++    Q    P  R+ PDRRWF
Sbjct: 19  DGNLRVKGENFYRDTKRVQFLNMYKGGRSVRNAKGDIIKAAPLQDTAAPTARVAPDRRWF 78

Query: 77  GNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLN--DHQKQARVHLLDTEPFQ 134
           GNTR ++Q  L  FRE L  +   SY V+LR  KLP SLLN  D  +     +L+TEPF+
Sbjct: 79  GNTRVISQDSLSHFREALGENKRDSYQVLLRRNKLPMSLLNEKDSAESPTAKILETEPFE 138

Query: 135 DAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTS----AEGVEGDGFRDLVR 190
             FGPK +RK+P++ AS  E L+         FE+K +  ++     +  E DG+    +
Sbjct: 139 QTFGPKAQRKKPRIAASSLEELISSTSTDNKTFEEKQELDSTLGLMGKQEEEDGWTQAAK 198

Query: 191 HTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLL 250
             +F KGQSKRIW ELYKVIDSSDVV+ VLDARDP GTRC  +  ++     HKH+I +L
Sbjct: 199 EAIFHKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVTDYMTNETPHKHLIYVL 258

Query: 251 NKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVG 310
           NKCDLVP W    W++ LSKE P+LAFHASI  SFGKGSL+ +LRQF++L  D+  ISVG
Sbjct: 259 NKCDLVPTWVAAAWVKHLSKERPTLAFHASITNSFGKGSLIQLLRQFSQLHKDRHQISVG 318

Query: 311 FVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
           F+GYPN GKSS+INTLR K V    P       W Y  L+
Sbjct: 319 FIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLM 358

GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|J9VQ03|NOG2_CRYNH Nucleolar GTP-binding protein 2 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=NOG2 PE=3 SV=2

 Score =  291 bits (746), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/341 (46%), Positives = 209/341 (61%), Gaps = 24/341 (7%)

Query: 30  SRSASTVRRLNMYKTRPKRDRKGKVLQHE-FQ--SKELPNTRIQPDRRWFGNTRCVNQKQ 86
           ++SAS V+ LN  K    RDR GK+++   FQ   KE    R++PDRRWFGNTR ++Q  
Sbjct: 43  AKSASRVKMLNGGKA--VRDRDGKIVEAAAFQKGEKEAEPGRVKPDRRWFGNTRVISQSA 100

Query: 87  LEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQA--RVHLLDTEPFQDAFGPKGKRK 144
           L+ FR  L+   +  Y+V+L+  KLP  LL D  K    R H+++TEPF + FGPK +RK
Sbjct: 101 LDHFRTALKEQKADPYSVLLKRNKLPMGLLQDDTKDGGRRPHIVETEPFGNTFGPKAQRK 160

Query: 145 RPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLV----------RHTMF 194
           RP+L     E L      S  A      A T+    +G+G  DL           R  ++
Sbjct: 161 RPRLDIGSIEEL----GESSAASAAAAAAETATAESQGNGTADLADIYHPTTSTAREPIY 216

Query: 195 EKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254
            KG S+RIWGELYKV+DSSDVV+ VLDARDP GTRC  +  +L++   HKH++ +LNK D
Sbjct: 217 AKGTSRRIWGELYKVLDSSDVVIHVLDARDPLGTRCKPVVEYLRKEKAHKHLVYVLNKVD 276

Query: 255 LVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGY 314
           LVP W T  W++ LS   P++AFHASIN SFGKGSL+ +LRQF+ L SDK+ ISVGF+GY
Sbjct: 277 LVPTWVTARWVKHLSLSAPTIAFHASINNSFGKGSLIQLLRQFSVLHSDKKQISVGFIGY 336

Query: 315 PNVGKSSVINTLRTKNVILFFP---ASVVWYWFYCQLLFYF 352
           PN GKSS+INTL+ K V    P    + VW +       Y 
Sbjct: 337 PNTGKSSIINTLKKKKVCTVAPIPGETKVWQYITLMRRIYL 377

GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation.

Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) (taxid: 235443)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
225461399	530	PREDICTED: nucleolar GTP-binding protein	0.969	0.649	0.853	1e-173
147775210	530	hypothetical protein VITISV_000763 [Viti	0.969	0.649	0.850	1e-172
354464677	567	GTP-binding family protein [Carica papay	0.969	0.606	0.844	1e-170
224128358	554	predicted protein [Populus trichocarpa]	0.969	0.620	0.822	1e-169
356549741	549	PREDICTED: nucleolar GTP-binding protein	0.969	0.626	0.839	1e-169
356544026	549	PREDICTED: nucleolar GTP-binding protein	0.969	0.626	0.836	1e-168
449449188	557	PREDICTED: nucleolar GTP-binding protein	0.969	0.617	0.813	1e-165
449492670	557	PREDICTED: LOW QUALITY PROTEIN: nucleola	0.969	0.617	0.813	1e-165
255575328	559	GTP-binding protein, putative [Ricinus c	0.957	0.608	0.816	1e-160
255550774	537	GTP-binding protein, putative [Ricinus c	0.957	0.633	0.790	1e-156

>gi|225461399|ref|XP_002284849.1| PREDICTED: nucleolar GTP-binding protein 2-like [Vitis vinifera]

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/347 (85%), Positives = 315/347 (90%), Gaps = 3/347 (0%)

Query: 1   MAKTKEKKVNVSGKPKHSLDANRTDGKSGSRSASTVRRLNMYKTRPKRDRKGKVLQHEFQ 60
           MAK KE+KVNVSGKPKHSLD NR +G    RSA+TVRRL MY TRPKRDRKGK+L+HE Q
Sbjct: 1   MAKKKERKVNVSGKPKHSLDVNRGNGDKEGRSAATVRRLKMYNTRPKRDRKGKILKHELQ 60

Query: 61  SKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQ 120
           SKELP+TRIQPDRRWFGNTR VNQK+LEFFREELQS MSSSYNVIL+EKKLP SLLNDHQ
Sbjct: 61  SKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQSRMSSSYNVILKEKKLPMSLLNDHQ 120

Query: 121 KQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGV 180
           KQARVHLLDTEPF+DAFGPK KR RPKL+A DYESLVK+ADGSQDAFEQK+  S  AEG 
Sbjct: 121 KQARVHLLDTEPFEDAFGPKKKRIRPKLMAMDYESLVKKADGSQDAFEQKHAGSAYAEGS 180

Query: 181 EGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH 240
           EGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC+HLE+HLKEH
Sbjct: 181 EGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKEH 240

Query: 241 CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL 300
           CKHKHMILLLNKCDL+PAWATKGWLRVLSKE+P+LAFHASINKSFGKGSLLSVLRQFARL
Sbjct: 241 CKHKHMILLLNKCDLIPAWATKGWLRVLSKEFPTLAFHASINKSFGKGSLLSVLRQFARL 300

Query: 301 KSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP---ASVVWYWF 344
           KSDKQAISVGFVGYPNVGKSSVINTLRTKNV    P    + VW + 
Sbjct: 301 KSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775210|emb|CAN68109.1| hypothetical protein VITISV_000763 [Vitis vinifera]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 295/347 (85%), Positives = 314/347 (90%), Gaps = 3/347 (0%)

Query: 1   MAKTKEKKVNVSGKPKHSLDANRTDGKSGSRSASTVRRLNMYKTRPKRDRKGKVLQHEFQ 60
           MAK KE+KVNVSGKPKHSLD NR +G    RSA+TVRRL MY TRPKRDRKGK+L+HE Q
Sbjct: 1   MAKKKERKVNVSGKPKHSLDVNRGNGDKEGRSAATVRRLKMYNTRPKRDRKGKILKHELQ 60

Query: 61  SKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQ 120
           SKELP+TRIQPDRRWFGNTR VNQK+LEFFREEL S MSSSYNVIL+EKKLP SLLNDHQ
Sbjct: 61  SKELPSTRIQPDRRWFGNTRVVNQKELEFFREELXSRMSSSYNVILKEKKLPMSLLNDHQ 120

Query: 121 KQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGV 180
           KQARVHLLDTEPF+DAFGPK KR RPKL+A DYESLVK+ADGSQDAFEQK+  S  AEG 
Sbjct: 121 KQARVHLLDTEPFEDAFGPKKKRIRPKLMAMDYESLVKKADGSQDAFEQKHAGSAYAEGS 180

Query: 181 EGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH 240
           EGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC+HLE+HLKEH
Sbjct: 181 EGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKEH 240

Query: 241 CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL 300
           CKHKHMILLLNKCDL+PAWATKGWLRVLSKE+P+LAFHASINKSFGKGSLLSVLRQFARL
Sbjct: 241 CKHKHMILLLNKCDLIPAWATKGWLRVLSKEFPTLAFHASINKSFGKGSLLSVLRQFARL 300

Query: 301 KSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP---ASVVWYWF 344
           KSDKQAISVGFVGYPNVGKSSVINTLRTKNV    P    + VW + 
Sbjct: 301 KSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|354464677|gb|AER26534.1| GTP-binding family protein [Carica papaya]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 294/348 (84%), Positives = 314/348 (90%), Gaps = 4/348 (1%)

Query: 1   MAKTKEKKVNVSGKPKHSLDANRTDGK-SGSRSASTVRRLNMYKTRPKRDRKGKVLQHEF 59
           M K KEK VNV+GKPKHSLDANR +GK S  RSASTVRRL MY TRP RD KGK+L++EF
Sbjct: 1   MVKKKEKTVNVNGKPKHSLDANRKNGKTSNVRSASTVRRLKMYNTRPTRDSKGKILKNEF 60

Query: 60  QSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDH 119
           QSKELP+TRIQPDRRWFGNTR VNQK+LEFFREELQS MSSSYNVIL+EKKLP SLL DH
Sbjct: 61  QSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQSRMSSSYNVILKEKKLPLSLLTDH 120

Query: 120 QKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEG 179
           +KQARVHLLDTEPFQDAFGPK KRKRPKLLASDYESLVK+AD S DA++QK  A TSAEG
Sbjct: 121 RKQARVHLLDTEPFQDAFGPKTKRKRPKLLASDYESLVKKADDSYDAYDQKYGAGTSAEG 180

Query: 180 VEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE 239
            +GDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC+HLE+HLKE
Sbjct: 181 TDGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKE 240

Query: 240 HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299
           HC HKH+ILLLNKCDLVPAWATKGWLRVLSKEYP+LAFHASINKSFGKGSLLSVLRQF+R
Sbjct: 241 HCSHKHLILLLNKCDLVPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFSR 300

Query: 300 LKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP---ASVVWYWF 344
           LKSDKQAISVGFVGYPNVGKSSVINTLRTKNV    P    + VW + 
Sbjct: 301 LKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI 348

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128358|ref|XP_002329142.1| predicted protein [Populus trichocarpa] gi|222869811|gb|EEF06942.1| predicted protein [Populus trichocarpa]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 288/350 (82%), Positives = 312/350 (89%), Gaps = 6/350 (1%)

Query: 1   MAKTKEKKVNVSGKPKHSLDANRTDG---KSGSRSASTVRRLNMYKTRPKRDRKGKVLQH 57
           MAK KE+K N+SGKPKHSLD NR++G    + SRSA+TVRRL MY  RPKRD KGK+L+H
Sbjct: 1   MAKQKERKSNISGKPKHSLDTNRSNGTIKNTNSRSAATVRRLQMYNVRPKRDSKGKILKH 60

Query: 58  EFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLN 117
           +FQS ELPNTRIQPDRRWFGNTR VNQK+LEFFREELQS MSSSYNVIL+E+KLP SLLN
Sbjct: 61  DFQSNELPNTRIQPDRRWFGNTRVVNQKELEFFREELQSRMSSSYNVILKERKLPLSLLN 120

Query: 118 DHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSA 177
           DHQKQARVHLLDT+PF+DAFGPK KRKRP+LLA+DYESLVK+ADGSQD FEQK     + 
Sbjct: 121 DHQKQARVHLLDTQPFEDAFGPKTKRKRPRLLAADYESLVKKADGSQDDFEQKCGDEATR 180

Query: 178 EGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHL 237
           EG E DGFRDLVRH MFEKGQSKRIWGELYKVIDSSDVVVQV+DARDPQGTRC+HLERHL
Sbjct: 181 EGTEADGFRDLVRHNMFEKGQSKRIWGELYKVIDSSDVVVQVIDARDPQGTRCYHLERHL 240

Query: 238 KEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQF 297
           KEHCKHKHMILLLNKCDL+PAWATKGWLRVLSKEYP+LAFHASINKSFGKGSLLSVLRQF
Sbjct: 241 KEHCKHKHMILLLNKCDLIPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQF 300

Query: 298 ARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP---ASVVWYWF 344
           ARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNV    P    + VW + 
Sbjct: 301 ARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549741|ref|XP_003543249.1| PREDICTED: nucleolar GTP-binding protein 2-like [Glycine max]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 292/348 (83%), Positives = 313/348 (89%), Gaps = 4/348 (1%)

Query: 1   MAKTKEKKVNVSGKPKHSLDANRT-DGKSGSRSASTVRRLNMYKTRPKRDRKGKVLQHEF 59
           MAK KEKKVNVSGKPKHSLD NR+ D K  SRSA+TVRRL MY TRP RDRKGKVL HE 
Sbjct: 1   MAKKKEKKVNVSGKPKHSLDVNRSNDAKKESRSAATVRRLKMYNTRPVRDRKGKVLSHEL 60

Query: 60  QSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDH 119
           QSKELP+TRIQPDRRWFGNTR VNQK+LEFFREELQS MSS+YNVIL+EKKLP SLLNDH
Sbjct: 61  QSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQSRMSSNYNVILKEKKLPLSLLNDH 120

Query: 120 QKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEG 179
           QKQARVHLLD EPFQDAFGPK KRKRP L+A+DYESL+K+ADGSQDAFEQK  +S SAE 
Sbjct: 121 QKQARVHLLDREPFQDAFGPKTKRKRPSLMAADYESLLKKADGSQDAFEQKYGSSVSAEA 180

Query: 180 VEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE 239
            + DGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC+HLE+HLKE
Sbjct: 181 NDEDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKE 240

Query: 240 HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299
           +CKHKHM+LLLNKCDLVPAWATKGWLRVLSKE+P+LAFHA+INKSFGKGSLLSVLRQFAR
Sbjct: 241 NCKHKHMVLLLNKCDLVPAWATKGWLRVLSKEFPTLAFHANINKSFGKGSLLSVLRQFAR 300

Query: 300 LKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP---ASVVWYWF 344
           LK DKQAISVGFVGYPNVGKSSVINTLRTKNV    P    + VW + 
Sbjct: 301 LKRDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544026|ref|XP_003540457.1| PREDICTED: nucleolar GTP-binding protein 2-like [Glycine max]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/348 (83%), Positives = 313/348 (89%), Gaps = 4/348 (1%)

Query: 1   MAKTKEKKVNVSGKPKHSLDANRT-DGKSGSRSASTVRRLNMYKTRPKRDRKGKVLQHEF 59
           MAK KEKKVNVSGKPKHSLD NR+ D K  SRSA+TVRRL MY TRP RDRKGKV+ HE 
Sbjct: 1   MAKKKEKKVNVSGKPKHSLDVNRSNDAKKESRSAATVRRLKMYNTRPVRDRKGKVVSHEL 60

Query: 60  QSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDH 119
           QSKELP+TRIQPDRRWFGNTR VNQK+LEFFREELQS MSS+YNVIL+EKKLP SLLNDH
Sbjct: 61  QSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQSRMSSNYNVILKEKKLPLSLLNDH 120

Query: 120 QKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEG 179
           QKQARVHLLD EPFQDAFGPK KRKRP LLA+DYESL+K+ADGSQDAFE+K  +S SAE 
Sbjct: 121 QKQARVHLLDREPFQDAFGPKTKRKRPILLAADYESLLKKADGSQDAFEEKYGSSVSAEA 180

Query: 180 VEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE 239
            + DGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC+HLE+HLKE
Sbjct: 181 NDEDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKE 240

Query: 240 HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299
           +CKHKHM+LLLNKCDLVPAWATKGWLRVLSKE+P+LAFHA+INKSFGKGSLLSVLRQFAR
Sbjct: 241 NCKHKHMVLLLNKCDLVPAWATKGWLRVLSKEFPTLAFHANINKSFGKGSLLSVLRQFAR 300

Query: 300 LKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP---ASVVWYWF 344
           LK DKQAISVGFVGYPNVGKSSVINTLRTKNV    P    + VW + 
Sbjct: 301 LKRDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449188|ref|XP_004142347.1| PREDICTED: nucleolar GTP-binding protein 2-like [Cucumis sativus]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 283/348 (81%), Positives = 311/348 (89%), Gaps = 4/348 (1%)

Query: 1   MAKTKEKKVNVSGKPKHSLDANRTDGKS-GSRSASTVRRLNMYKTRPKRDRKGKVLQHEF 59
           MAK KEKKVNVSGKPKHSLD NR++ K+   R+A+TVRRL MY TRPKRDRKGKVL+++ 
Sbjct: 1   MAKKKEKKVNVSGKPKHSLDVNRSNEKNKNGRTAATVRRLKMYNTRPKRDRKGKVLKNDL 60

Query: 60  QSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDH 119
           QS ELP+TRIQPDRRWFGNTR VNQK+LE FREEL+  MSSSYNVIL+E+KLP SLLNDH
Sbjct: 61  QSNELPDTRIQPDRRWFGNTRVVNQKELEIFREELEKRMSSSYNVILKERKLPLSLLNDH 120

Query: 120 QKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEG 179
           QKQ+RVHLLDTEPFQDAFGPKGKRKRPKLLA+DYESL+++AD S D FE+K   + + EG
Sbjct: 121 QKQSRVHLLDTEPFQDAFGPKGKRKRPKLLAADYESLLQKADKSHDDFEEKYAENATVEG 180

Query: 180 VEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE 239
            E DGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC+HLERHLKE
Sbjct: 181 SEEDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLERHLKE 240

Query: 240 HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299
           HCKHKH++LLLNKCDL+PAWATKGWLRVLSKEYP+LAFHASINKSFGKGSLLSVLRQFAR
Sbjct: 241 HCKHKHVVLLLNKCDLIPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFAR 300

Query: 300 LKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP---ASVVWYWF 344
           LKSDKQAISVGFVGYPNVGKSSVINTLRTK V    P    + VW + 
Sbjct: 301 LKSDKQAISVGFVGYPNVGKSSVINTLRTKTVCKVAPIPGETKVWQYI 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492670|ref|XP_004159067.1| PREDICTED: LOW QUALITY PROTEIN: nucleolar GTP-binding protein 2-like [Cucumis sativus]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 283/348 (81%), Positives = 311/348 (89%), Gaps = 4/348 (1%)

Query: 1   MAKTKEKKVNVSGKPKHSLDANRTDGKS-GSRSASTVRRLNMYKTRPKRDRKGKVLQHEF 59
           MAK KEKKVNVSGKPKHSLD NR++ K+   R+A+TVRRL MY TRPKRDRKGKVL+++ 
Sbjct: 1   MAKKKEKKVNVSGKPKHSLDVNRSNEKNKNGRTAATVRRLKMYNTRPKRDRKGKVLKNDL 60

Query: 60  QSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDH 119
           QS ELP+TRIQPDRRWFGNTR VNQK+LE FREEL+  MSSSYNVIL+E+KLP SLLNDH
Sbjct: 61  QSNELPDTRIQPDRRWFGNTRVVNQKELEIFREELEKRMSSSYNVILKERKLPLSLLNDH 120

Query: 120 QKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEG 179
           QKQ+RVHLLDTEPFQDAFGPKGKRKRPKLLA+DYESL+++AD S D FE+K   + + EG
Sbjct: 121 QKQSRVHLLDTEPFQDAFGPKGKRKRPKLLAADYESLLQKADKSHDDFEEKYAENATVEG 180

Query: 180 VEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE 239
            E DGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC+HLERHLKE
Sbjct: 181 SEEDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLERHLKE 240

Query: 240 HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299
           HCKHKH++LLLNKCDL+PAWATKGWLRVLSKEYP+LAFHASINKSFGKGSLLSVLRQFAR
Sbjct: 241 HCKHKHVVLLLNKCDLIPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFAR 300

Query: 300 LKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP---ASVVWYWF 344
           LKSDKQAISVGFVGYPNVGKSSVINTLRTK V    P    + VW + 
Sbjct: 301 LKSDKQAISVGFVGYPNVGKSSVINTLRTKTVCKVAPIPGETKVWQYI 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575328|ref|XP_002528567.1| GTP-binding protein, putative [Ricinus communis] gi|223532011|gb|EEF33822.1| GTP-binding protein, putative [Ricinus communis]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 281/344 (81%), Positives = 308/344 (89%), Gaps = 4/344 (1%)

Query: 5   KEKKVNVSGKPKHSLDANRTDGKSGSRSAST-VRRLNMYKTRPKRDRKGKVLQHEFQSKE 63
           KE+KVNVSGKPKHSLD NR++G S S  ++  VRRL MYK +P RD KGK+L+H+ QSK+
Sbjct: 4   KERKVNVSGKPKHSLDTNRSNGSSSSTRSAATVRRLKMYKNKPLRDSKGKILKHDLQSKD 63

Query: 64  LPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQA 123
           LP+TRI PDRRWFGNTR VNQK+LEFFR+ELQS MSSSYNVIL+E+KLP SLLNDHQKQA
Sbjct: 64  LPSTRIVPDRRWFGNTRVVNQKELEFFRDELQSRMSSSYNVILKERKLPLSLLNDHQKQA 123

Query: 124 RVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGD 183
           RVHLLDTEPF+DAFGPK KRKRPKLLA+DYESL+K+ADGSQD FE K+     AEG EGD
Sbjct: 124 RVHLLDTEPFEDAFGPKRKRKRPKLLAADYESLLKKADGSQDVFETKHGTDAPAEGSEGD 183

Query: 184 GFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKH 243
           GFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQV+DARDPQGTRC+HLERHLKEHCKH
Sbjct: 184 GFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVIDARDPQGTRCYHLERHLKEHCKH 243

Query: 244 KHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSD 303
           KHM+LLLNKCDLVPAWATKGWLR+LSKEYP+LAFHASINKSFGKGSLLSVLRQFARLKSD
Sbjct: 244 KHMVLLLNKCDLVPAWATKGWLRILSKEYPTLAFHASINKSFGKGSLLSVLRQFARLKSD 303

Query: 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFP---ASVVWYWF 344
           KQAISVGFVGYPNVGKSSVINTLRTKNV    P    + VW + 
Sbjct: 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550774|ref|XP_002516435.1| GTP-binding protein, putative [Ricinus communis] gi|223544255|gb|EEF45776.1| GTP-binding protein, putative [Ricinus communis]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/344 (79%), Positives = 299/344 (86%), Gaps = 4/344 (1%)

Query: 5   KEKKVNVSGKPKHSLDANRTDGKSGS-RSASTVRRLNMYKTRPKRDRKGKVLQHEFQSKE 63
           K+K VNVSGKPKHSLD NR++G + S R+A+TVRRLNMYK +P RD KGK+L+H+ QSK+
Sbjct: 4   KKKNVNVSGKPKHSLDTNRSNGSNTSIRTAATVRRLNMYKNKPVRDYKGKILKHDLQSKD 63

Query: 64  LPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQA 123
           LPNTRIQPDRRW   TR V QK LEFFREELQ  MS  Y+VIL+E+KLP SLLNDHQKQA
Sbjct: 64  LPNTRIQPDRRWSIPTRVVIQKDLEFFREELQKRMSKGYHVILKERKLPLSLLNDHQKQA 123

Query: 124 RVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGD 183
           RVHLLDTEPFQDAFGP  KRKRPKLLA DYESL+ +AD SQDAFE K+D +   E  E +
Sbjct: 124 RVHLLDTEPFQDAFGPNRKRKRPKLLAVDYESLLNKADDSQDAFEMKHDTNAPEEISEEN 183

Query: 184 GFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKH 243
           GFRDLVRHTMFEKGQSKRIWGELYKVIDSS+VVVQVLDARDPQGTRC+HLE+HLKEHCKH
Sbjct: 184 GFRDLVRHTMFEKGQSKRIWGELYKVIDSSNVVVQVLDARDPQGTRCYHLEKHLKEHCKH 243

Query: 244 KHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSD 303
           KHMILLLNKCDLVPAWATKGWLR+L KEYP+LAFHASI+KSFGKGSLLSVLRQFARLKSD
Sbjct: 244 KHMILLLNKCDLVPAWATKGWLRILCKEYPALAFHASISKSFGKGSLLSVLRQFARLKSD 303

Query: 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFP---ASVVWYWF 344
           KQAISVGFVGYPNVGKSSVINTLRTKNV    P    + VW + 
Sbjct: 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2011561	576	AtNug2 "AT1G52980" [Arabidopsi	0.963	0.593	0.8	7.3e-146
UNIPROTKB|Q10LF7	535	Os03g0352400 "Os03g0352400 pro	0.966	0.641	0.752	1.6e-141
UNIPROTKB|A8ITK3	472	CHLREDRAFT_128793 "Predicted p	0.969	0.728	0.604	5.7e-107
UNIPROTKB|E1BVP8	722	GNL2 "Uncharacterized protein"	0.971	0.477	0.511	1.7e-91
RGD|1305006	734	Gnl2 "guanine nucleotide bindi	0.974	0.471	0.501	1.9e-90
UNIPROTKB|F1MDN8	732	GNL2 "Uncharacterized protein"	0.974	0.472	0.498	1.7e-89
DICTYBASE|DDB_G0280289	986	DDB_G0280289 "Nucleolar GTP-bi	0.949	0.341	0.513	2.8e-89
UNIPROTKB|Q13823	731	GNL2 "Nucleolar GTP-binding pr	0.974	0.473	0.492	3.6e-89
MGI|MGI:2385207	728	Gnl2 "guanine nucleotide bindi	0.974	0.475	0.495	5.9e-89
UNIPROTKB|F1PYL5	731	GNL2 "Uncharacterized protein"	0.974	0.473	0.492	9.6e-89

TAIR|locus:2011561 AtNug2 "AT1G52980" [Arabidopsis thaliana (taxid:3702)]

 Score = 1425 (506.7 bits), Expect = 7.3e-146, P = 7.3e-146
 Identities = 280/350 (80%), Positives = 307/350 (87%)

Query:     1 MAKTKEKKVNVSGKPKHSLDANRTDGK---SGSRSASTVRRLNMYKTRPKRDRKGKVLQH 57
             M K KEKK NVSGKPKHSLDANR DGK   + +RS STV RL MYKTRPKR+  GK+L +
Sbjct:     1 MVK-KEKKANVSGKPKHSLDANRADGKKKTTETRSKSTVNRLKMYKTRPKRNAGGKILSN 59

Query:    58 EFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLN 117
             E+QSKELPN+RI PDRRWFGNTR VNQK+LE+FREELQ+ MSS+YNVIL+E+KLP SLL 
Sbjct:    60 EYQSKELPNSRIAPDRRWFGNTRVVNQKELEYFREELQTKMSSNYNVILKERKLPMSLLT 119

Query:   118 DHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSA 177
             D++KQ+RVHLLD EPFQDAFG K KRKRPKL+ASDYE+LVK+A  SQDAFE+KN A  S 
Sbjct:   120 DNKKQSRVHLLDMEPFQDAFGRKTKRKRPKLVASDYEALVKKAAESQDAFEEKNGAGPSG 179

Query:   178 EG-VEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERH 236
             EG  E DGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDV+VQV+DARDPQGTRCHHLE+ 
Sbjct:   180 EGGEEEDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVIVQVIDARDPQGTRCHHLEKT 239

Query:   237 LKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQ 296
             LKEH KHKHMILLLNKCDLVPAWATKGWLRVLSKEYP+LAFHAS+NKSFGKGSLLSVLRQ
Sbjct:   240 LKEHHKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPTLAFHASVNKSFGKGSLLSVLRQ 299

Query:   297 FARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPA---SVVWYW 343
             FARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNV    P    + VW +
Sbjct:   300 FARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY 349

GO:0005525 "GTP binding" evidence=IEA;ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0003924 "GTPase activity" evidence=IDA

GO:0042254 "ribosome biogenesis" evidence=IDA

UNIPROTKB|Q10LF7 Os03g0352400 "Os03g0352400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1384 (492.3 bits), Expect = 1.6e-141, P = 1.6e-141
 Identities = 268/356 (75%), Positives = 301/356 (84%)

Query:     1 MAKTKEKKVNVSGKPKHSLDANRTDGKSGS----------RSASTVRRLNMYKTRPKRDR 50
             MAK KE+ VNVSGKP+HSLD NR + K G+          RSA+TVRRL MYK RP RDR
Sbjct:     1 MAKKKERAVNVSGKPRHSLDVNRANDKKGAGGGAGGGGGGRSAATVRRLKMYKMRPLRDR 60

Query:    51 KGKVLQHEFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKK 110
              GK+L+H+ QSKELPNTRI+PDRRWFGNTR VNQK+LEFFREELQS +S++YNVIL+E+K
Sbjct:    61 GGKILKHDLQSKELPNTRIEPDRRWFGNTRVVNQKELEFFREELQSRLSNNYNVILKERK 120

Query:   111 LPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQK 170
             LP SLL DHQKQAR HLLDTEPF+ AFGPKGKRKRPKL+A DYESL+K+AD SQ AFE K
Sbjct:   121 LPLSLLQDHQKQARAHLLDTEPFEHAFGPKGKRKRPKLMALDYESLLKKADDSQGAFEDK 180

Query:   171 NDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC 230
             +  +   +  E DG RDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDP GTRC
Sbjct:   181 HATAKLLKEEEEDGLRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRC 240

Query:   231 HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL 290
             +HLE+HLKE+ KHKH++ LLNKCDLVPAWATKGWLR LSK+YP+LAFHASIN SFGKGSL
Sbjct:   241 YHLEKHLKENAKHKHLVFLLNKCDLVPAWATKGWLRTLSKDYPTLAFHASINSSFGKGSL 300

Query:   291 LSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPA---SVVWYW 343
             LSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLR+K+V    P    + VW +
Sbjct:   301 LSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRSKSVCKVAPIPGETKVWQY 356

GO:0003924 "GTPase activity" evidence=IBA

GO:0005730 "nucleolus" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|A8ITK3 CHLREDRAFT_128793 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 214/354 (60%), Positives = 254/354 (71%)

Query:     3 KTKEKKVNVSGKPKHSLDANR-TDGKSGSRSASTVRRLNMYKTRPKRDRKGKVLQHEFQS 61
             K K   V  + KPKHSLDANR + GK G R A+TVRRL MYK RP RD+KGK+L  E Q 
Sbjct:    11 KAKVGGVEDNRKPKHSLDANRPSSGKGGMRDAATVRRLKMYKQRPVRDKKGKLLYQELQG 70

Query:    62 KELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQK 121
             KELP TRIQPDRRWFGNTR + QKQLE FR E+ S ++ +Y V+LREKKLP  LL D +K
Sbjct:    71 KELPTTRIQPDRRWFGNTRVIGQKQLEQFRTEMSSKVNDAYAVLLREKKLPLQLLEDPEK 130

Query:   122 -----QARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTS 176
                  QAR  L+ T+PF D FGPK +RKRPKL   + E L + A      F +   A+  
Sbjct:   131 KLGGKQARSSLVATQPFADTFGPKKQRKRPKLAVENLEDLAQTAGDKSTKFME---AAGL 187

Query:   177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERH 236
              +G E    +D +    +EKGQSKRIWGELYKV+DSSDV+VQVLDARDP GTRC+ LE+H
Sbjct:   188 GDGTEMLLLKDTMLERAYEKGQSKRIWGELYKVLDSSDVIVQVLDARDPNGTRCNFLEQH 247

Query:   237 LKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQ 296
             +++H +HKH+ILLLNKCDLVP+W TK WL  LS+++P LAFHASI   FGKG+LLS+LRQ
Sbjct:   248 IRKHLRHKHIILLLNKCDLVPSWVTKRWLHYLSRDFPVLAFHASITNPFGKGALLSLLRQ 307

Query:   297 FARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPA-SVVWYWFYCQLL 349
              ARL+SDKQAISVGFVGYPNVGKSSVINTLRTK V    P       W Y  L+
Sbjct:   308 LARLRSDKQAISVGFVGYPNVGKSSVINTLRTKKVCKAAPIPGETKVWQYITLM 361

GO:0003924 "GTPase activity" evidence=IBA

GO:0005730 "nucleolus" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|E1BVP8 GNL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 183/358 (51%), Positives = 247/358 (68%)

Query:     1 MAKTKEKKVNVSGKPKHSLDANRTDGKSGS--RSASTVRRLNMYKTRPKRDRKGKVLQH- 57
             M K + K  +     + S + +R  G  G+  R  +T+RRLNMY+ + +R+++GKV++  
Sbjct:     1 MVKPRYKGRSTINPSRASTNPDRVAGAGGNNMRDRATIRRLNMYRQKERRNKRGKVIKPL 60

Query:    58 EFQSKELPNT--RIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSL 115
             ++QS   P T  R++P+ +WFGNTR + Q  L+ F+EE+++ M   Y V++++ KLP SL
Sbjct:    61 QYQSTVAPGTVARVEPNIKWFGNTRVIKQSSLQKFQEEMETVMKDPYRVVMKQSKLPMSL 120

Query:   116 LNDHQKQ--ARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDA 173
              +D  K   +RVH+LDTE F+  FGPK +RKRP L ASD +SL++ A+ S + ++Q  D 
Sbjct:   121 FHDRIKPHTSRVHILDTETFETTFGPKAQRKRPNLAASDVQSLLENAEASSEFYDQGKDR 180

Query:   174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL 233
                 E     G RD  +  +F+KGQSKRIWGELYKVIDSSDVVVQVLDARDP GTR  H+
Sbjct:   181 DLVTEDT---GVRDEAQEEIFKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHV 237

Query:   234 ERHLKEHCKH-KHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLS 292
             E +LK+  KH KH+I +LNKCDLVP WATK W+ VLS+EYP+LAFHAS+   FGKG+ + 
Sbjct:   238 ESYLKKE-KHWKHLIFVLNKCDLVPTWATKRWVAVLSQEYPTLAFHASLTNPFGKGAFIQ 296

Query:   293 VLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
             +LRQF +L SDK+ ISVGF+GYPNVGKSSVINTLR+K V    P A     W Y  L+
Sbjct:   297 LLRQFGKLHSDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLM 354

GO:0005525 "GTP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

RGD|1305006 Gnl2 "guanine nucleotide binding protein-like 2 (nucleolar)" [Rattus norvegicus (taxid:10116)]

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 179/357 (50%), Positives = 242/357 (67%)

Query:     1 MAKTKEKKVNVSGKPKHSLDANRTDGKSGS--RSASTVRRLNMYKTRPKRDRKGKVLQH- 57
             M K K K  +   +   S + +R  G  G   R   T+RRLNMY+ + +R+ +GKV++  
Sbjct:     1 MVKPKYKGRSTINRSAASTNPDRVQGAGGQNMRDRGTIRRLNMYRQKERRNSRGKVIKPL 60

Query:    58 EFQSKELPNT--RIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSL 115
             ++QS   P T  R++P+ +WFGNTR + Q  L+ F+EE+   M   Y V++++ KLP SL
Sbjct:    61 QYQSTVAPGTVARVEPNIKWFGNTRVIKQASLQKFQEEMDKVMKDPYKVVMKQSKLPMSL 120

Query:   116 LNDHQK--QARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDA 173
             L+D  +   A+VH+LDTE F+  FGPK +RKRP L ASD +SL++ A+ S ++++Q  D 
Sbjct:   121 LHDRVQPHNAKVHILDTESFESTFGPKSQRKRPNLFASDMQSLLENAEMSTESYDQGKDR 180

Query:   174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL 233
                 E     G R+  +  +++KGQSKRIWGELYKVIDSSDVVVQVLDARDP GTR  H+
Sbjct:   181 DLVTEDT---GVRNEAQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSSHI 237

Query:   234 ERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSV 293
             E +LK+    KH+I +LNKCDLVP WATK W+ VLSK+YP+LAFHAS+   FGKG+ + +
Sbjct:   238 EAYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSKDYPTLAFHASLTNPFGKGAFIQL 297

Query:   294 LRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
             LRQF +L +DK+ ISVGF+GYPNVGKSSVINTLR+K V    P A     W Y  L+
Sbjct:   298 LRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLM 354

GO:0003924 "GTPase activity" evidence=IBA

GO:0005525 "GTP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|F1MDN8 GNL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 178/357 (49%), Positives = 243/357 (68%)

Query:     1 MAKTKEKKVNVSGKPKHSLDANRTDGKSGS--RSASTVRRLNMYKTRPKRDRKGKVLQH- 57
             M K K K  +       S + +R  G  G   R  +T+RRLNMY+ + +R+ +GKV++  
Sbjct:     1 MVKPKYKGRSTINPSNASTNPDRVQGAGGHNMRDRATIRRLNMYRQKERRNSRGKVIKPL 60

Query:    58 EFQSKELPNT--RIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSL 115
             ++QS     T  R++P+ +WFGNTR + Q  L+ F+EE+ + +   Y V++++ KLP SL
Sbjct:    61 QYQSTVASGTVARVEPNIKWFGNTRVIKQSSLQKFQEEMDTVLKDPYKVVMKQSKLPMSL 120

Query:   116 LNDHQK--QARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDA 173
             L+D  +   A+VH+LDTE F+  FGPK +RKRP L ASD +SL++ A+ S ++++Q  D 
Sbjct:   121 LHDRIRPHNAKVHILDTESFETTFGPKAQRKRPNLFASDMQSLIENAETSTESYDQGKDR 180

Query:   174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL 233
                AE     G R+  +  +F+KGQSKRIWGELYKVIDSSDVVVQVLDARDP GTR  H+
Sbjct:   181 DLVAEDT---GVRNEAQEEIFKKGQSKRIWGELYKVIDSSDVVVQVLDARDPVGTRSPHI 237

Query:   234 ERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSV 293
             E +LK+    KH+I +LNKCDLVP WATK W+ VLS++YP+LAFHAS+   FGKG+ + +
Sbjct:   238 ETYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQL 297

Query:   294 LRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
             LRQF +L +DK+ ISVGF+GYPNVGKSSVINTLR+K V    P A     W Y  L+
Sbjct:   298 LRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLM 354

GO:0005730 "nucleolus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

DICTYBASE|DDB_G0280289 DDB_G0280289 "Nucleolar GTP-binding protein 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 177/345 (51%), Positives = 237/345 (68%)

Query:     8 KVNVSGKPKHSLDANRTDGKSGSRSASTVRRLNMYKTRPKRDRKGKVLQHEFQSKELPN- 66
             ++N S   +++ D   +  K+  R  +T++RL MY  RP R R GK++   F SK+  + 
Sbjct:    18 RINKSNN-QNNPDRIVSKTKTNLRDRATIKRLAMYSERPTRTRDGKLISGAFMSKDTSHD 76

Query:    67 TRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVH 126
             TRI+PDRRWFGNTR + Q QL  FREE++S +++ Y V+L   KLP  LL D  K+ +++
Sbjct:    77 TRIRPDRRWFGNTRAIGQDQLNTFREEMESQVNNPYKVLLHASKLPLGLLKDSTKKTQMN 136

Query:   127 LLDTEPFQDAFGPKGKRKRPKLLA-SDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGF 185
             LL TE FQ  FGPK +RKRP L A +DYE+++ +A      +++  D +   +  E    
Sbjct:   137 LLTTESFQTTFGPKKQRKRPNLKAVTDYENMINKAAEITSGYDETKDKNIKPDEDE---- 192

Query:   186 RDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH 245
              +  R  +F+KG SKRIWGELYKVIDSSDV+VQVLDARDP GTR  H+E+ LK+  KHKH
Sbjct:   193 IETRRKDIFDKGTSKRIWGELYKVIDSSDVLVQVLDARDPMGTRSRHVEQQLKKTSKHKH 252

Query:   246 MILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQ 305
             +I +LNKCDLVP WAT  W+++LSKEYP+LAFHASI   FGKGSL+ +LRQF++L SDK+
Sbjct:   253 LIFILNKCDLVPTWATARWVKILSKEYPTLAFHASITNPFGKGSLIQLLRQFSKLHSDKK 312

Query:   306 AISVGFVGYPNVGKSSVINTLRTKNVILFFPA-SVVWYWFYCQLL 349
              ISVGF+GYPNVGKSS+INTL++K V    P       W Y  L+
Sbjct:   313 QISVGFIGYPNVGKSSIINTLKSKVVCKAAPIPGETKVWQYITLM 357

GO:0005730 "nucleolus" evidence=IEA;IBA

GO:0005525 "GTP binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0003924 "GTPase activity" evidence=IBA

UNIPROTKB|Q13823 GNL2 "Nucleolar GTP-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 176/357 (49%), Positives = 242/357 (67%)

Query:     1 MAKTKEKKVNVSGKPKHSLDANRTDGKSGS--RSASTVRRLNMYKTRPKRDRKGKVLQH- 57
             M K K K  +     K S + +R  G  G   R  +T+RRLNMY+ + +R+ +GK+++  
Sbjct:     1 MVKPKYKGRSTINPSKASTNPDRVQGAGGQNMRDRATIRRLNMYRQKERRNSRGKIIKPL 60

Query:    58 EFQSKELPNT--RIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSL 115
             ++QS     T  R++P+ +WFGNTR + Q  L+ F+EE+ + M   Y V++++ KLP SL
Sbjct:    61 QYQSTVASGTVARVEPNIKWFGNTRVIKQSSLQKFQEEMDTVMKDPYKVVMKQSKLPMSL 120

Query:   116 LNDHQK--QARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDA 173
             L+D  +    +VH+LDTE F+  FGPK +RKRP L ASD +SL++ A+ S ++++Q  D 
Sbjct:   121 LHDRIRPHNLKVHILDTESFETTFGPKSQRKRPNLFASDMQSLIENAEMSTESYDQGKDR 180

Query:   174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL 233
                 E     G R+  +  +++KGQSKRIWGELYKVIDSSDVVVQVLDARDP GTR  H+
Sbjct:   181 DLVTEDT---GVRNEAQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHI 237

Query:   234 ERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSV 293
             E +LK+    KH+I +LNKCDLVP WATK W+ VLS++YP+LAFHAS+   FGKG+ + +
Sbjct:   238 ETYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQL 297

Query:   294 LRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
             LRQF +L +DK+ ISVGF+GYPNVGKSSVINTLR+K V    P A     W Y  L+
Sbjct:   298 LRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLM 354

GO:0005634 "nucleus" evidence=TAS

GO:0003924 "GTPase activity" evidence=IBA;NAS

GO:0005525 "GTP binding" evidence=NAS

GO:0042254 "ribosome biogenesis" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=NAS;IBA

MGI|MGI:2385207 Gnl2 "guanine nucleotide binding protein-like 2 (nucleolar)" [Mus musculus (taxid:10090)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 177/357 (49%), Positives = 242/357 (67%)

Query:     1 MAKTKEKKVNVSGKPKHSLDANRTDGKSGS--RSASTVRRLNMYKTRPKRDRKGKVLQH- 57
             M K K K  +   +   S + +R  G  G   R   T+RRLNMY+ + +R+ +GKV++  
Sbjct:     1 MVKPKYKGRSTINRSAASTNPDRVQGAGGQNMRDRGTIRRLNMYRQKERRNSRGKVIKPL 60

Query:    58 EFQSKELPNT--RIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSL 115
             ++QS     T  R++P+ +WFGNTR + Q  L+ F+EE+   M   Y V++++ KLP SL
Sbjct:    61 QYQSTVASGTVARVEPNIKWFGNTRVIKQASLQKFQEEMDKVMKDPYKVVMKQSKLPMSL 120

Query:   116 LNDHQK--QARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDA 173
             L+D  +   A+VH+LDTE F+  FGPK +RKRP L ASD +SL++ A+ S ++++Q  D 
Sbjct:   121 LHDRIQPHNAKVHILDTESFESTFGPKSQRKRPNLFASDMQSLLENAEMSTESYDQGKDR 180

Query:   174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL 233
                   +E  G R+  +  +++KGQSKRIWGELYKVIDSSDVVVQVLDARDP GTR  H+
Sbjct:   181 DLV---MEDTGVRNEAQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHI 237

Query:   234 ERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSV 293
             E +LK+    KH+I +LNKCDLVP WATK W+ VLS++YP+LAFHAS+   FGKG+ + +
Sbjct:   238 EAYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQL 297

Query:   294 LRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
             LRQF +L +DK+ ISVGF+GYPNVGKSSVINTLR+K V    P A     W Y  L+
Sbjct:   298 LRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLM 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|F1PYL5 GNL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 176/357 (49%), Positives = 245/357 (68%)

Query:     1 MAKTKEKKVNVSGKPKHSLDANRTDGKSGS--RSASTVRRLNMYKTRPKRDRKGKVLQH- 57
             M K + K  +     K S + +R  G  G   R  +T+RRLNMY+ + +R+ +GKV++  
Sbjct:     1 MVKPRYKGRSTINPSKASTNPDRVQGAGGQNMRDRATIRRLNMYRQKERRNSRGKVIKPL 60

Query:    58 EFQSKELPNT--RIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSL 115
             ++QS     T  R++P+ +WFGNTR + Q  L+ F+EE+ + M   Y V++++ KLP SL
Sbjct:    61 QYQSTVASGTVARVEPNIKWFGNTRVIKQSSLQKFQEEMGAVMKDPYKVVMKQSKLPMSL 120

Query:   116 LNDHQK--QARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDA 173
             L+D  +   ++VH+LDTE F++ FGPK +RKRP LLASD +SL++ A+ S +++++  D 
Sbjct:   121 LHDRIQPHNSKVHILDTESFENTFGPKSQRKRPNLLASDMQSLLENAEMSTESYDEGKDR 180

Query:   174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL 233
                 E     G R+  +  +++KGQSKRIWGELYKVIDSSDVVVQVLDARDP GTR  H+
Sbjct:   181 DLVTEDT---GVRNEAQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHI 237

Query:   234 ERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSV 293
             E +LK+    KH+I +LNKCDLVP WATK W+ VLS++YP+LAFHAS+   FGKG+ + +
Sbjct:   238 ETYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLPNPFGKGAFIQL 297

Query:   294 LRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-ASVVWYWFYCQLL 349
             LRQF +L +DK+ ISVGF+GYPNVGKSSVINTLR+K V    P A     W Y  L+
Sbjct:   298 LRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLM 354

GO:0005730 "nucleolus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6C036	NOG2_YARLI	No assigned EC number	0.5090	0.9126	0.6365	yes	no
O14236	NOG2_SCHPO	No assigned EC number	0.5090	0.9211	0.6089	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00027646001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (526 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•	•		•		0.945
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•	•		•		0.916
	GSVIVG00028735001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (477 aa)				•	•		•		0.875
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•	•		•		0.862
	GSVIVG00019318001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (245 aa)				•	•		•		0.840
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)				•	•				0.836
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•	•		•		0.831
	GSVIVG00031075001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (573 aa)			•	•	•		•		0.823
	GSVIVG00017910001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (481 aa)			•	•	•				0.822
	GSVIVG00036355001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)				•	•				0.813

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	3e-88
pfam08153	130	pfam08153, NGP1NT, NGP1NT (NUC091) domain	2e-57
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	2e-40
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	2e-36
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	5e-36
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	2e-31
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	1e-28
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	4e-16
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	7e-13
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	3e-11
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	2e-09
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	1e-07
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	3e-06
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	8e-06
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	1e-04
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	1e-04
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	4e-04
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	8e-04
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	0.001
cd01898	170	cd01898, Obg, Obg GTPase	0.002
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	0.004
TIGR03598	178	TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi	0.004

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score =  261 bits (670), Expect = 3e-88
 Identities = 92/127 (72%), Positives = 112/127 (88%)

Query: 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW 264
           ELYKVIDSSDV++QVLDARDP GTRC H+E++L++   HKH+I +LNKCDLVP W TK W
Sbjct: 1   ELYKVIDSSDVIIQVLDARDPMGTRCKHVEKYLRKEKPHKHLIFVLNKCDLVPTWVTKRW 60

Query: 265 LRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVIN 324
           ++VLSKEYP+LAFHASI   FGKG+L+++LRQFA+L SDK+ ISVGF+GYPNVGKSSVIN
Sbjct: 61  VKVLSKEYPTLAFHASITNPFGKGALINLLRQFAKLHSDKKQISVGFIGYPNVGKSSVIN 120

Query: 325 TLRTKNV 331
           TLR+K V
Sbjct: 121 TLRSKKV 127

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|149291 pfam08153, NGP1NT, NGP1NT (NUC091) domain

 Score =  182 bits (464), Expect = 2e-57
 Identities = 67/130 (51%), Positives = 90/130 (69%), Gaps = 3/130 (2%)

Query: 41  MYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHM 98
           MYK+ + KR+ KGK+++   FQSKE P  RI+PDR+WFGNTR ++Q  L+ FREE+    
Sbjct: 1   MYKSGKAKRNAKGKIIKAAPFQSKEGPVARIEPDRKWFGNTRVISQDALQKFREEMGEKK 60

Query: 99  SSSYNVILREKKLPFSLLNDHQ-KQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLV 157
              Y+V+L+  KLP SLL D   KQ +V +L+TEPF+D FGPK +RKRPKL  S  E L 
Sbjct: 61  KDPYSVLLKRSKLPMSLLKDSTKKQKKVKILETEPFEDTFGPKAQRKRPKLAVSSLEELA 120

Query: 158 KRADGSQDAF 167
           K+A+ S D +
Sbjct: 121 KKAEESADTY 130

This N terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1. Length = 130

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score =  140 bits (354), Expect = 2e-40
 Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 23/141 (16%)

Query: 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP 273
           DV+++VLDARDP G RC  +ER +     +K ++L+LNK DLVP    + WL+ L  E+P
Sbjct: 1   DVILEVLDARDPLGCRCPQVERAVLVLGPNKKLVLVLNKIDLVPKENVEKWLKYLRNEFP 60

Query: 274 SLAFHASINK-----------------------SFGKGSLLSVLRQFARLKSDKQAISVG 310
           ++AF AS  +                         G  +LL +L+ +AR K  K +I+VG
Sbjct: 61  TVAFKASTQQQKKNLSRKSKKVKASDDLLSSSACLGADALLKLLKNYARNKGIKTSITVG 120

Query: 311 FVGYPNVGKSSVINTLRTKNV 331
            VGYPNVGKSSVIN+L+    
Sbjct: 121 VVGYPNVGKSSVINSLKRSRA 141

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score =  134 bits (338), Expect = 2e-36
 Identities = 56/145 (38%), Positives = 79/145 (54%), Gaps = 12/145 (8%)

Query: 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255
            G  K+   +L +V+ S DVVV+V+DARDP GTR   LER +KE    K  +L+LNK DL
Sbjct: 18  PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE----KPKLLVLNKADL 73

Query: 256 VPAWATKGWLRVLSKEYPSLAFH-ASINKSFGKGSLLSV-------LRQFARLKSDKQAI 307
            P   TK W +   KE        ++ ++  GK    ++       +++  +    K+ I
Sbjct: 74  APKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKI 133

Query: 308 SVGFVGYPNVGKSSVINTLRTKNVI 332
            VG VGYPNVGKS++IN L  K V 
Sbjct: 134 RVGVVGYPNVGKSTLINRLLGKKVA 158

Length = 322

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score =  127 bits (321), Expect = 5e-36
 Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP 273
           DVVV+V+DARDP  +R   +E  + E   +K +I++LNK DLVP    + W+  LS+ Y 
Sbjct: 1   DVVVEVVDARDPLSSRNPDIEVLINEK--NKKLIMVLNKADLVPKEVLRKWVAELSELYG 58

Query: 274 SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKN 330
           +  F  S     G   L + + +       K+ I VG VG PNVGKSS IN L  K 
Sbjct: 59  TKTFFISATNGQGILKLKAEITKQKLKLKYKKGIRVGVVGLPNVGKSSFINALLNKF 115

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score =  115 bits (290), Expect = 2e-31
 Identities = 50/131 (38%), Positives = 67/131 (51%), Gaps = 23/131 (17%)

Query: 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT 261
           +W +L++VI+ SDVVVQ++DAR+P   RC  LE+++KE    K  +LLLNK DLV     
Sbjct: 1   VWRQLWRVIERSDVVVQIVDARNPLFFRCPDLEKYVKEVDPSKENVLLLNKADLVTEEQR 60

Query: 262 KGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSS 321
           K W R   KE   + F                        S     ++G VGYPNVGKSS
Sbjct: 61  KAWARYFKKEGIVVLF-----------------------FSALNEATIGLVGYPNVGKSS 97

Query: 322 VINTLRTKNVI 332
           +IN L     +
Sbjct: 98  LINALVGSKKV 108

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score =  108 bits (272), Expect = 1e-28
 Identities = 49/131 (37%), Positives = 67/131 (51%), Gaps = 9/131 (6%)

Query: 203 WGELYKVIDS-SDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT 261
           W  L + I   +DVV++V+DARDP+ TR   LER   E    K +I++LNK DLVP    
Sbjct: 1   WKRLVRRIIKEADVVLEVVDARDPELTRSRKLERMALE--LGKKLIIVLNKADLVPREVL 58

Query: 262 KGWLRVLSKE-YPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKS 320
           + W  V   E  P +   A             + R    L  D + + VG VGYP VGKS
Sbjct: 59  EKWKEVFESEGLPVVYVSARERLGTRI-----LRRTIKELAIDGKPVIVGVVGYPKVGKS 113

Query: 321 SVINTLRTKNV 331
           S+IN L+ ++ 
Sbjct: 114 SIINALKGRHS 124

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score = 74.9 bits (185), Expect = 4e-16
 Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 18/128 (14%)

Query: 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP 273
           DVV++V DAR P  +R +     L +   +K  +++LNK DL     TK WL    K + 
Sbjct: 21  DVVIEVRDARIPLSSR-NPD---LDKILGNKPRLIVLNKADLADPAKTKKWL----KYFK 72

Query: 274 SLAFHA-SINKSFGKG------SLLSVLRQFARLKSDKQ---AISVGFVGYPNVGKSSVI 323
           S       +N   GKG          +L++  +LK+       +    VG PNVGKS++I
Sbjct: 73  SQGEPVLFVNAKNGKGVKKLLKKAKKLLKENEKLKAKGLLPRPLRAMVVGIPNVGKSTLI 132

Query: 324 NTLRTKNV 331
           N LR K V
Sbjct: 133 NRLRGKKV 140

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score = 67.5 bits (166), Expect = 7e-13
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 13/126 (10%)

Query: 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP 273
           DVV++VLDAR P  +R   ++    E   +K  +++LNK DL     TK WL+   +E  
Sbjct: 23  DVVIEVLDARIPLSSRNPMID----EIRGNKPRLIVLNKADLADPAVTKQWLKYF-EEKG 77

Query: 274 SLAFHASINKSFGKGSLLSVLRQ--FARLKSDKQ------AISVGFVGYPNVGKSSVINT 325
             A   +  K  G   ++   ++    + +  K        I    VG PNVGKS++IN 
Sbjct: 78  IKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLLNRPIRAMIVGIPNVGKSTLINR 137

Query: 326 LRTKNV 331
           L  K V
Sbjct: 138 LAGKKV 143

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score = 62.9 bits (154), Expect = 3e-11
 Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 15/136 (11%)

Query: 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW 264
           E+ + +   DVV++VLDAR P  +    ++    +   +K  +L+LNK DL     TK W
Sbjct: 17  EIKENLKLVDVVIEVLDARIPLSSENPMID----KIIGNKPRLLILNKSDLADPEVTKKW 72

Query: 265 LRVL-SKEYPSLAFHASINKSFGKGSLLSVLRQ-----FARLKSD---KQAISVGFVGYP 315
           +     +   +LA   +  K  G   +L   ++       R K+     +AI    +G P
Sbjct: 73  IEYFEEQGIKALAI--NAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIP 130

Query: 316 NVGKSSVINTLRTKNV 331
           NVGKS++IN L  K +
Sbjct: 131 NVGKSTLINRLAGKKI 146

Length = 287

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 16/141 (11%)

Query: 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP----AWATKG 263
            +++ + +VV V+D  D  G+    L   +      K +IL+ NK DL+P        K 
Sbjct: 29  TLLNDNALVVHVVDIFDFPGSLIPGLAELIGA----KPVILVGNKIDLLPKDVKPNRLKQ 84

Query: 264 WLRVLSKE---YPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKS 320
           W++   K            S  K +G   L+  +++ A+ + D     V  VG  NVGKS
Sbjct: 85  WVKKRLKIGGLKIKDVILVSAKKGWGVEELIEEIKKLAKYRGD-----VYVVGATNVGKS 139

Query: 321 SVINTLRTKNVILFFPASVVW 341
           ++IN L   N       ++V 
Sbjct: 140 TLINALLKSNGGKVQAQALVQ 160

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%)

Query: 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT--- 261
            L  + DS+ ++V V+D  D +G+    L+R +        ++L+ NK DL+P       
Sbjct: 56  LLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGG----NPVLLVGNKIDLLPKSVNLSK 111

Query: 262 -KGWLRVLSKE---YPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNV 317
            K W++  +KE    P      S  K  G   +  +L +  + ++ K       VG  NV
Sbjct: 112 IKEWMKKRAKELGLKPVDIILVSAKKGNG---IDELLDKIKKARNKKDVY---VVGVTNV 165

Query: 318 GKSSVINTLRTKNVI 332
           GKSS+IN L  +N  
Sbjct: 166 GKSSLINKLLKQNNG 180

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 309 VGFVGYPNVGKSSVINTLRTKNV 331
           V  VG PNVGKS++IN L    V
Sbjct: 2   VALVGRPNVGKSTLINALTGAKV 24

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 29/143 (20%)

Query: 199 SKRIWGELYKVIDSSDVVVQVLDARD---PQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255
            + I  +    I+ +DV++ V+D R+   P       + + L+     K +IL++NK D 
Sbjct: 70  QELIREQALIAIEEADVILFVVDGREGITPAD---EEIAKILRR--SKKPVILVVNKIDN 124

Query: 256 VPAWATKGWLRVLSKEYPSLAF------HASINKSFGKGSLLSVLRQFAR------LKSD 303
           + A            E+ SL F       A   +  G G LL  + +          + +
Sbjct: 125 LKAEELAY-------EFYSLGFGEPVPISAEHGR--GIGDLLDAVLELLPPDEEEEEEEE 175

Query: 304 KQAISVGFVGYPNVGKSSVINTL 326
              I +  +G PNVGKSS+IN +
Sbjct: 176 TDPIKIAIIGRPNVGKSSLINAI 198

Length = 444

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 194 FEKGQSKRIWGELY----KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILL 249
             +G S+    E +    + I  +D+++ V+DA +        +   L++  K K +IL+
Sbjct: 56  LIEGASEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELEKLPK-KPIILV 114

Query: 250 LNK 252
           LNK
Sbjct: 115 LNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 43.5 bits (104), Expect = 1e-04
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 43/138 (31%)

Query: 210 IDSSDVVVQVLDAR------DPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG 263
           I+ +DV++ V+D R      D        + + L++   +K +IL++NK D         
Sbjct: 78  IEEADVILFVVDGRAGLTPAD------EEIAKILRK--SNKPVILVVNKVDGPDE----- 124

Query: 264 WLRVLSKEYPSL---------AFHASINKSFGKG------SLLSVLRQFARLKSDKQAIS 308
                + E+ SL         A H       G+G      ++L  L +      + + I 
Sbjct: 125 --EADAYEFYSLGLGEPYPISAEH-------GRGIGDLLDAILEELPEEEEEDEEDEPIK 175

Query: 309 VGFVGYPNVGKSSVINTL 326
           +  +G PNVGKSS+IN L
Sbjct: 176 IAIIGRPNVGKSSLINAL 193

Length = 435

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 11/66 (16%), Positives = 27/66 (40%)

Query: 194 FEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253
            ++            ++  +D+++ V+D+ D +      L    +   +   +IL+ NK 
Sbjct: 57  LDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPIILVGNKI 116

Query: 254 DLVPAW 259
           DL+   
Sbjct: 117 DLLEER 122

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258
            + I+ +D+V+ V+DA +         +  + E    K +I++LNK DL+  
Sbjct: 77  REAIEEADLVLLVVDASEGLD----EEDLEILELPAKKPVIVVLNKSDLLSD 124

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 40.5 bits (96), Expect = 8e-04
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 24/144 (16%)

Query: 195 EKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLE--RHLKEHCKH-KHMILLLN 251
           + G  K+I  +    I+ +DV++ V+D R+  G      E  + L+   K  K +IL+ N
Sbjct: 61  DDGLDKQIREQAEIAIEEADVILFVVDGRE--GLTPEDEEIAKWLR---KSGKPVILVAN 115

Query: 252 KCDLVPAWATKGWLRVLSKEYPSLAF---HA-SINKSFGKGSLLSVLRQF-----ARLKS 302
           K D       K     ++ E+ SL F      S     G G LL  + +         + 
Sbjct: 116 KID-----GKKE--DAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEE 168

Query: 303 DKQAISVGFVGYPNVGKSSVINTL 326
           +   I +  +G PNVGKS+++N L
Sbjct: 169 EDGPIKIAIIGRPNVGKSTLVNAL 192

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 39.3 bits (93), Expect = 0.001
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 13/81 (16%)

Query: 247 ILLLNKCDLVPAWATKGWLRVLSK-EYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQ 305
           +++LNK DLV     +  L +  K  YP LA    ++   G+G  L  LR    LK  K 
Sbjct: 37  VIVLNKADLVDDEELEELLEIYEKLGYPVLA----VSAKTGEG--LDELR--ELLK-GK- 86

Query: 306 AISVGFVGYPNVGKSSVINTL 326
             SV  VG   VGKS+++N L
Sbjct: 87  -TSV-LVGQSGVGKSTLLNAL 105

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 309 VGFVGYPNVGKSSVINTL 326
           VG VG PN GKS++++ +
Sbjct: 3   VGLVGLPNAGKSTLLSAI 20

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 313 GYPNVGKSSVINTLRTKNV 331
           GYPNVGKSS++N L     
Sbjct: 7   GYPNVGKSSLVNKLTRAKP 25

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 309 VGFVGYPNVGKSSVINTL 326
           + F G  NVGKSS+IN L
Sbjct: 21  IAFAGRSNVGKSSLINAL 38

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
KOG2423	572	consensus Nucleolar GTPase [General function predi	100.0
PF08153	130	NGP1NT: NGP1NT (NUC091) domain; InterPro: IPR01297	100.0
COG1161	322	Predicted GTPases [General function prediction onl	99.97
KOG2484	435	consensus GTPase [General function prediction only	99.96
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	99.96
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.96
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.94
PRK13796	365	GTPase YqeH; Provisional	99.94
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.94
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.94
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.94
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.92
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.92
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.9
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.89
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.89
COG1160	444	Predicted GTPases [General function prediction onl	99.88
PRK12289	352	GTPase RsgA; Reviewed	99.8
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	99.77
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.76
PRK03003	472	GTP-binding protein Der; Reviewed	99.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.75
PRK00093	435	GTP-binding protein Der; Reviewed	99.75
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.73
PRK12288	347	GTPase RsgA; Reviewed	99.7
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.69
PRK00098	298	GTPase RsgA; Reviewed	99.69
COG1162	301	Predicted GTPases [General function prediction onl	99.52
PRK01889	356	GTPase RsgA; Reviewed	99.48
KOG1249	572	consensus Predicted GTPases [General function pred	99.23
COG0486	454	ThdF Predicted GTPase [General function prediction	99.01
COG1160	444	Predicted GTPases [General function prediction onl	98.95
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.91
COG1159	298	Era GTPase [General function prediction only]	98.88
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.85
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	98.83
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.77
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.75
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.74
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.74
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.72
PRK00089	292	era GTPase Era; Reviewed	98.7
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.69
PRK00093	435	GTP-binding protein Der; Reviewed	98.69
PRK15494	339	era GTPase Era; Provisional	98.67
PRK03003	472	GTP-binding protein Der; Reviewed	98.66
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.65
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.65
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.64
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.63
COG2262	411	HflX GTPases [General function prediction only]	98.62
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.61
cd00881	189	GTP_translation_factor GTP translation factor fami	98.61
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.6
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.6
PRK12299	335	obgE GTPase CgtA; Reviewed	98.59
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.58
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.57
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.56
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.55
COG0218	200	Predicted GTPase [General function prediction only	98.53
PRK09866	741	hypothetical protein; Provisional	98.5
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.5
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.49
COG0486	454	ThdF Predicted GTPase [General function prediction	98.49
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.48
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.47
PRK12296	500	obgE GTPase CgtA; Reviewed	98.46
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.46
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.45
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.43
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.41
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.41
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.41
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.4
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.39
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.38
PRK12298	390	obgE GTPase CgtA; Reviewed	98.38
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.38
PRK12298	390	obgE GTPase CgtA; Reviewed	98.36
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.36
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.34
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.33
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.33
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.32
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.32
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.32
PRK04213	201	GTP-binding protein; Provisional	98.32
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.31
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.31
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.31
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.3
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.29
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.28
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.28
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.27
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.26
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.26
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.26
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.26
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.26
PTZ00099	176	rab6; Provisional	98.26
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.26
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.25
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.25
COG1084	346	Predicted GTPase [General function prediction only	98.25
PRK15494	339	era GTPase Era; Provisional	98.25
PRK11058	426	GTPase HflX; Provisional	98.25
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.24
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.24
PTZ00258	390	GTP-binding protein; Provisional	98.24
PRK13768	253	GTPase; Provisional	98.24
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.24
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	98.24
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.24
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.23
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.23
PRK12299	335	obgE GTPase CgtA; Reviewed	98.23
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.23
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.23
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.23
PRK12297	424	obgE GTPase CgtA; Reviewed	98.23
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.22
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.22
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.22
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.22
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.21
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.21
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.21
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.21
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.2
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.2
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.2
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.19
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.19
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.19
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.18
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.18
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.18
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.17
PRK11058	426	GTPase HflX; Provisional	98.17
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.17
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.16
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.16
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.16
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.15
PLN00223	181	ADP-ribosylation factor; Provisional	98.15
PTZ00133	182	ADP-ribosylation factor; Provisional	98.15
COG0218	200	Predicted GTPase [General function prediction only	98.15
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.14
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	98.14
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.14
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.13
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.13
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.13
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.12
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.12
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.12
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	98.11
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.08
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.08
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.08
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.08
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.08
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	98.08
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.07
PRK05433	600	GTP-binding protein LepA; Provisional	98.07
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	98.07
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	98.06
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.06
PRK12297	424	obgE GTPase CgtA; Reviewed	98.05
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.05
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.05
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.04
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.04
PRK12296	500	obgE GTPase CgtA; Reviewed	98.04
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.04
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.04
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.04
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.03
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.03
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	98.03
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	98.03
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.02
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	98.02
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.02
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.02
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.01
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.01
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	98.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.0
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	97.99
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.99
PTZ00369	189	Ras-like protein; Provisional	97.98
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.97
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	97.97
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	97.97
COG0536	369	Obg Predicted GTPase [General function prediction	97.96
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	97.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.95
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	97.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.94
PRK12736	394	elongation factor Tu; Reviewed	97.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.92
PLN03118	211	Rab family protein; Provisional	97.92
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	97.91
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	97.91
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	97.9
PRK00049	396	elongation factor Tu; Reviewed	97.89
CHL00071	409	tufA elongation factor Tu	97.89
PLN03110	216	Rab GTPase; Provisional	97.89
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.88
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	97.87
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.87
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	97.87
PRK12317	425	elongation factor 1-alpha; Reviewed	97.87
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	97.86
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	97.85
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.85
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	97.83
PLN03108	210	Rab family protein; Provisional	97.82
CHL00189	742	infB translation initiation factor 2; Provisional	97.81
KOG0462	650	consensus Elongation factor-type GTP-binding prote	97.81
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	97.8
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.79
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.78
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.77
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.77
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.77
PLN03127	447	Elongation factor Tu; Provisional	97.76
PRK05306	787	infB translation initiation factor IF-2; Validated	97.75
PRK12735	396	elongation factor Tu; Reviewed	97.72
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	97.72
cd01896	233	DRG The developmentally regulated GTP-binding prot	97.71
PRK14845	1049	translation initiation factor IF-2; Provisional	97.71
COG1163	365	DRG Predicted GTPase [General function prediction	97.71
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.7
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	97.7
TIGR00485	394	EF-Tu translation elongation factor TU. This align	97.67
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.66
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	97.66
COG0536	369	Obg Predicted GTPase [General function prediction	97.64
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	97.63
COG2229	187	Predicted GTPase [General function prediction only	97.62
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	97.6
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	97.58
PRK10218	607	GTP-binding protein; Provisional	97.58
PRK04004	586	translation initiation factor IF-2; Validated	97.56
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.56
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	97.56
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.56
PLN03126	478	Elongation factor Tu; Provisional	97.53
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	97.53
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.51
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	97.5
PRK12739	691	elongation factor G; Reviewed	97.49
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	97.45
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	97.44
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.42
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.4
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.4
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	97.39
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	97.39
smart00178	184	SAR Sar1p-like members of the Ras-family of small	97.38
PRK00741	526	prfC peptide chain release factor 3; Provisional	97.38
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.36
PTZ00141	446	elongation factor 1- alpha; Provisional	97.32
COG1163	365	DRG Predicted GTPase [General function prediction	97.31
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	97.27
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.25
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	97.21
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.2
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.2
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	97.18
KOG1145	683	consensus Mitochondrial translation initiation fac	97.18
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	97.14
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.13
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	97.11
PLN03118	211	Rab family protein; Provisional	97.11
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.1
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	97.1
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.1
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	97.08
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	97.08
PLN00043	447	elongation factor 1-alpha; Provisional	97.05
PRK12740	668	elongation factor G; Reviewed	97.05
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	97.02
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.01
PRK00007	693	elongation factor G; Reviewed	96.97
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	96.97
PTZ00133	182	ADP-ribosylation factor; Provisional	96.96
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	96.95
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	96.94
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.93
COG1217	603	TypA Predicted membrane GTPase involved in stress	96.89
PRK13351	687	elongation factor G; Reviewed	96.87
COG2262	411	HflX GTPases [General function prediction only]	96.83
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	96.82
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	96.8
PRK09866	741	hypothetical protein; Provisional	96.78
KOG1249	572	consensus Predicted GTPases [General function pred	96.71
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	96.7
COG3596	296	Predicted GTPase [General function prediction only	96.68
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	96.63
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	96.59
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.58
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	96.54
cd04105	203	SR_beta Signal recognition particle receptor, beta	96.51
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	96.51
PLN03110	216	Rab GTPase; Provisional	96.5
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	96.47
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	96.46
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	96.44
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	96.41
PLN00223	181	ADP-ribosylation factor; Provisional	96.41
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	96.38
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	96.31
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	96.26
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	96.25
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	96.22
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	96.18
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.18
KOG0410	410	consensus Predicted GTP binding protein [General f	96.17
COG1084	346	Predicted GTPase [General function prediction only	96.13
KOG0395	196	consensus Ras-related GTPase [General function pre	96.11
KOG0461	522	consensus Selenocysteine-specific elongation facto	96.09
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	96.04
CHL00071	409	tufA elongation factor Tu	96.03
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	96.01
KOG2486	320	consensus Predicted GTPase [General function predi	95.99
KOG0410	410	consensus Predicted GTP binding protein [General f	95.95
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	95.92
PRK07560	731	elongation factor EF-2; Reviewed	95.9
PLN00116	843	translation elongation factor EF-2 subunit; Provis	95.87
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	95.81
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	95.81
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	95.79
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	95.79
PTZ00416	836	elongation factor 2; Provisional	95.75
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	95.64
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	95.62
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	95.59
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	95.56
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.56
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	95.52
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.51
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	95.51
PRK14738	206	gmk guanylate kinase; Provisional	95.46
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	95.36
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	95.18
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	95.09
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.09
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.04
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	95.0
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	94.99
COG3596	296	Predicted GTPase [General function prediction only	94.97
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	94.96
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	94.87
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	94.74
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	94.73
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	94.63
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	94.6
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.56
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	94.54
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	94.54
PRK12735	396	elongation factor Tu; Reviewed	94.54
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	94.36
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	94.36
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	94.3
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	94.28
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.25
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	94.25
CHL00189	742	infB translation initiation factor 2; Provisional	94.24
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	94.21
COG5258	527	GTPBP1 GTPase [General function prediction only]	94.17
PLN03127	447	Elongation factor Tu; Provisional	94.1
PRK05306	787	infB translation initiation factor IF-2; Validated	94.1
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	94.09
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	93.99
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	93.97
PRK09435	332	membrane ATPase/protein kinase; Provisional	93.97
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	93.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	93.9
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	93.69
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	93.68
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	93.68
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	93.67
PLN00023	334	GTP-binding protein; Provisional	93.54
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	93.46
KOG0394	210	consensus Ras-related GTPase [General function pre	93.44
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	93.41
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	93.18
PRK06696	223	uridine kinase; Validated	93.15
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	92.96
PF13555	62	AAA_29: P-loop containing region of AAA domain	92.94
PF09439	181	SRPRB: Signal recognition particle receptor beta s	92.85
PRK05439	311	pantothenate kinase; Provisional	92.84
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	92.81
COG2884	223	FtsE Predicted ATPase involved in cell division [C	92.79
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	92.76
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	92.74
smart00382	148	AAA ATPases associated with a variety of cellular	92.68
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	92.64
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	92.63
PRK00049	396	elongation factor Tu; Reviewed	92.59
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	92.59
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	92.58
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	92.55
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	92.53
PLN03126	478	Elongation factor Tu; Provisional	92.5
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	92.44
PRK12736	394	elongation factor Tu; Reviewed	92.38
KOG0054	1381	consensus Multidrug resistance-associated protein/	92.36
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	92.3
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	92.29
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	92.22
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	92.19
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	92.17
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	92.17
COG0050	394	TufB GTPases - translation elongation factors [Tra	92.16
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	92.1
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	92.1
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	92.1
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	92.07
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	92.06
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	92.05
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	92.03
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	92.03
TIGR00485	394	EF-Tu translation elongation factor TU. This align	92.03
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	91.95
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	91.93
PLN00023	334	GTP-binding protein; Provisional	91.93
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	91.91
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	91.9
PLN02772	398	guanylate kinase	91.88
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	91.87
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	91.85
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	91.85
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	91.83
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	91.82
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	91.8
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	91.79
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	91.77
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	91.77
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	91.75
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	91.74
cd03269	210	ABC_putative_ATPase This subfamily is involved in	91.72
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	91.68
cd03216	163	ABC_Carb_Monos_I This family represents the domain	91.67
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	91.65
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	91.64
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	91.62
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	91.61
COG0523	323	Putative GTPases (G3E family) [General function pr	91.61
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	91.61
cd03215	182	ABC_Carb_Monos_II This family represents domain II	91.6
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	91.59
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	91.56
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	91.54
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	91.52
PRK13851	344	type IV secretion system protein VirB11; Provision	91.52
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	91.52
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	91.52
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	91.51
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	91.5
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	91.5
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	91.48
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	91.47
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	91.47
COG1100	219	GTPase SAR1 and related small G proteins [General	91.42
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	91.39
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	91.36
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	91.36
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	91.32
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	91.32
COG3638	258	ABC-type phosphate/phosphonate transport system, A	91.3
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	91.29
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	91.28
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	91.23
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	91.21
COG4988	559	CydD ABC-type transport system involved in cytochr	91.18
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	91.14
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	91.14
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	91.12
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	91.08
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	91.07
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	91.06
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	91.06
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	91.05
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	91.02
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	91.01
PRK09602	396	translation-associated GTPase; Reviewed	91.01
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	91.01
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	90.99
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	90.98
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	90.98
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	90.96

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=100.00  E-value=1.5e-112  Score=823.42  Aligned_cols=344  Identities=57%  Similarity=0.933  Sum_probs=331.9

Q ss_pred             cccccccCCCCCCCCCCCCCC--CCCCcccHHhhhhhhhccC-CcCCCCCCCeecc-cccCCCCCCccccCCCcccccee
Q 018454            5 KEKKVNVSGKPKHSLDANRTD--GKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTR   80 (355)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~r~~--~~~~~r~~~~~~~l~m~~~-~~~r~~~g~~~~~-~~~~~~~~~~ri~p~r~wf~ntr   80 (355)
                      ++++.+.+..++||+||+|..  |+++||+++||+|||||++ ||+||+.|+|+++ +||++.+|.||||||||||||||
T Consensus         5 ~k~k~~~~~~~~hs~np~r~~~k~~~~~r~k~tv~rL~Myrs~k~krns~Gkil~~a~fQss~~~~aRieP~rkWFgntR   84 (572)
T KOG2423|consen    5 KKEKSRTIRESKHSTNPGRLRGKGENNYRNKKTVKRLNMYRSGKPKRNSKGKILKAAPFQSSLAPVARIEPDRKWFGNTR   84 (572)
T ss_pred             ccccccccCCccccCCccccccccccccccHHHHHHHHHHhccCcccccCCccccccccccccCcccccCCCchhccCce
Confidence            566777888999999999986  8999999999999999995 9999999999997 89999999999999999999999


Q ss_pred             eechHHHHHHHHHHHhhhcCCcEEEecCCCcccccccchhhhhhhccccccccccccCCCCCCCCCCCCcCCHHHHHHHH
Q 018454           81 CVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRA  160 (355)
Q Consensus        81 vi~q~~l~~f~~~~~~~~~~p~~v~~~~~klp~~l~~~~~~~~~~~~~~~~~f~~~fg~~~qrkrp~l~~~~~~~l~~~~  160 (355)
                      ||+|++||+||++|+++++|||+||||++|||||||+|..+..++|+||+|||++|||+|+|||||+|.++++|+|.+.+
T Consensus        85 vI~q~~Lq~Fr~e~g~~~~dpyqVllk~~KlPmSLL~e~~k~~rvhvldtesF~~tFG~KsqRKRp~L~~s~le~L~k~a  164 (572)
T KOG2423|consen   85 VISQTELQKFREELGKKLKDPYQVLLKQSKLPMSLLQEKTKTPRVHVLDTESFEDTFGPKSQRKRPKLTASSLEELSKAA  164 (572)
T ss_pred             eecHHHHHHHHHHHHhhhcChhhheeecCCCChhhhhccccCcceeeecccchhhhhCchhhhcCcccchhhHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhh
Q 018454          161 DGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH  240 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~  240 (355)
                      +..+..|+.+...+.   ..+++|+....++++|.+|||+|+|.++|++|+++||||+|+|||||+|++|.++++||+++
T Consensus       165 ~e~~~~yee~~~~~~---~~e~~g~~~~~~~~if~kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke  241 (572)
T KOG2423|consen  165 EESDDKYEEKKLGDL---REEEDGVRKAARDAIFSKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKE  241 (572)
T ss_pred             hhhhhhhhhhccccc---hhhcccchHHHHHHHHhccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhc
Confidence            999999998855443   45678899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChh
Q 018454          241 CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKS  320 (355)
Q Consensus       241 ~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKS  320 (355)
                      .+|||+|+|+|||||+|.|++..|+..|++++|+++||+|..+.+|.+.|+++|+||..+|.++++|+||||||||||||
T Consensus       242 ~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKS  321 (572)
T KOG2423|consen  242 KPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKS  321 (572)
T ss_pred             CCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCccccCCCCCee-EEEEEEEeee
Q 018454          321 SVINTLRTKNVILFFPASVVW-YWFYCQLLFY  351 (355)
Q Consensus       321 SLIN~Ll~~~~~~vs~iPGtT-~~~y~~l~~~  351 (355)
                      |+||+|+.+++|+|+||||+| +||||||++.
T Consensus       322 SiINTLR~KkVCkvAPIpGETKVWQYItLmkr  353 (572)
T KOG2423|consen  322 SIINTLRKKKVCKVAPIPGETKVWQYITLMKR  353 (572)
T ss_pred             HHHHHHhhcccccccCCCCcchHHHHHHHHhc
Confidence            999999999999999999999 9999999874

>PF08153 NGP1NT: NGP1NT (NUC091) domain; InterPro: IPR012971 This N-terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 []

Probab=100.00  E-value=3e-56  Score=375.52  Aligned_cols=127  Identities=57%  Similarity=1.014  Sum_probs=122.5

Q ss_pred             hccC-CcCCCCCCCeecc-cccCCCCCCccccCCCccccceeeechHHHHHHHHHHHhhhcCCcEEEecCCCcccccccc
Q 018454           41 MYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLND  118 (355)
Q Consensus        41 m~~~-~~~r~~~g~~~~~-~~~~~~~~~~ri~p~r~wf~ntrvi~q~~l~~f~~~~~~~~~~p~~v~~~~~klp~~l~~~  118 (355)
                      ||++ ||+||++||||++ .||+.+.++||||||||||||||||||++|++|||||+++.+|||+||||++|||||||+|
T Consensus         1 My~~gk~~Rn~~Gkiik~a~~q~~~~~~aRI~PdRrWFgNTRvI~Q~~L~~FReem~~~~~DPy~VlLk~~KLPmsLL~d   80 (130)
T PF08153_consen    1 MYKSGKPKRNRKGKIIKAAPFQSKEGPPARIEPDRRWFGNTRVISQEALEKFREEMGEKVKDPYSVLLKRSKLPMSLLQD   80 (130)
T ss_pred             CCCCCCcccCCCCCEeechhccCCCCCccccccchhhhcCceEECHHHHHHHHHHHHHhhcCCceEeeeCCcCCHHHhcc
Confidence            9997 9999999999997 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-hhhhhhccccccccccccCCCCCCCCCCCCcCCHHHHHHHHhhhHHHH
Q 018454          119 H-QKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAF  167 (355)
Q Consensus       119 ~-~~~~~~~~~~~~~f~~~fg~~~qrkrp~l~~~~~~~l~~~~~~~~~~~  167 (355)
                      . .+..++|||++|||++|||||+|||||+|.++|+|||++.++..+..|
T Consensus        81 ~~~k~~~~~il~te~F~~tFGpKaqRKRpkL~~~~~eeLa~~a~~~~~~Y  130 (130)
T PF08153_consen   81 SGTKQKRVHILETEPFEDTFGPKAQRKRPKLSVSSLEELAKKAEESQESY  130 (130)
T ss_pred             cccccCCcceeecCCHHHHhCCcccccCccccccCHHHHHHHHHHhhccC
Confidence            9 888999999999999999999999999999999999999998776554

>COG1161 Predicted GTPases [General function prediction only]

Probab=99.97  E-value=5.7e-30  Score=250.03  Aligned_cols=166  Identities=36%  Similarity=0.461  Sum_probs=143.3

Q ss_pred             hhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhc
Q 018454          162 GSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC  241 (355)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~  241 (355)
                      .|++|+..+|++.+                .+| +||+.++|+++.++++.+|+|+.|+|||+|.+++++.+++++.   
T Consensus         1 ~~~~~~~~~~~~~i----------------~~~-~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~---   60 (322)
T COG1161           1 QCQRCFRLKHYNKI----------------QWF-PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK---   60 (322)
T ss_pred             CchhhhHHHhcccc----------------cCC-CCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc---
Confidence            49999999998743                234 7889999999999999999999999999999999999999986   


Q ss_pred             CCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHH--------HHHHHHHhhhccccceEEEEee
Q 018454          242 KHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLL--------SVLRQFARLKSDKQAISVGFVG  313 (355)
Q Consensus       242 ~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll--------~~L~q~~~~~~~~~~i~V~~vG  313 (355)
                       +++.++|+||+||+|....+.|.+++....+..++.+|+..+.+...+.        +.+.++.........++|||||
T Consensus        61 -~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG  139 (322)
T COG1161          61 -EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVG  139 (322)
T ss_pred             -cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEc
Confidence             4677999999999999999999999999877777888888888887777        4444444433345568999999


Q ss_pred             cCCCChhHHHHHhhccCccccCCCCCee-EEEEEEE
Q 018454          314 YPNVGKSSVINTLRTKNVILFFPASVVW-YWFYCQL  348 (355)
Q Consensus       314 ~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~~l  348 (355)
                      +||||||||||+|++++.++||+.||+| -.|++.+
T Consensus       140 ~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~  175 (322)
T COG1161         140 YPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL  175 (322)
T ss_pred             CCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc
Confidence            9999999999999999999999999999 6666654

>KOG2484 consensus GTPase [General function prediction only]

Probab=99.96  E-value=4.5e-30  Score=250.65  Aligned_cols=143  Identities=44%  Similarity=0.658  Sum_probs=130.9

Q ss_pred             HHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEE
Q 018454          199 SKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFH  278 (355)
Q Consensus       199 s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~  278 (355)
                      -+...+++.++++.+||||+|+|||||++++|+.+++.+.....++.+|+||||+||+|.++.+.|+.||+.++|+++|.
T Consensus       133 ~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fk  212 (435)
T KOG2484|consen  133 KKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFK  212 (435)
T ss_pred             HHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceee
Confidence            35677999999999999999999999999999999999976556799999999999999999999999999999999998


Q ss_pred             eeec------------CCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          279 ASIN------------KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       279 vSa~------------~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      +|..            ..+|.+.|+..|..++..+.-+..|.||+||||||||||+||+|...+.|.|++.||.|
T Consensus       213 ast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT  287 (435)
T KOG2484|consen  213 ASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT  287 (435)
T ss_pred             cccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch
Confidence            7643            23688899999999988766688999999999999999999999999999999999998

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=99.96  E-value=1.7e-29  Score=252.78  Aligned_cols=256  Identities=26%  Similarity=0.318  Sum_probs=167.5

Q ss_pred             CCCccccceeeechHHHHHHHHH--HHhh----hcCCcEEEe--cCCCcccccccchhhhhhhccccccccccccCCCCC
Q 018454           71 PDRRWFGNTRCVNQKQLEFFREE--LQSH----MSSSYNVIL--REKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGK  142 (355)
Q Consensus        71 p~r~wf~ntrvi~q~~l~~f~~~--~~~~----~~~p~~v~~--~~~klp~~l~~~~~~~~~~~~~~~~~f~~~fg~~~q  142 (355)
                      ++--|.-=+.|..+++|+.|+..  ++..    .+...++|=  .++..+.|    .....+.+-.. |. ..-+..-.-
T Consensus        41 ~~~~~~~l~svt~~s~~d~~l~~ae~a~~~f~ae~~~~~~i~~~~~~~~~~s----~~ee~r~~q~~-ee-~~~~~~L~i  114 (562)
T KOG1424|consen   41 YEWGKLVLESVTEESDLDAFLGTAELAETEFTAEKSNETIIENEQRTGSLSS----ATEEQRELQKQ-EE-ALNASRLDI  114 (562)
T ss_pred             cccccceeeeeecccChHHhhhhhhhhhhhhhhhhccccccchhhccccccc----HHHHhhhhhhh-hh-hhhcccccc
Confidence            33444566788899999999984  3321    122222221  11112222    11111111111 11 001223344


Q ss_pred             CCCCCCCcC-CHHHHHHHHhhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEec
Q 018454          143 RKRPKLLAS-DYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLD  221 (355)
Q Consensus       143 rkrp~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvD  221 (355)
                      ++||.|... +.|+|........-.|.-+-..     ..+.+++    ..++|+++  ..+|+|||++++.||+||+|||
T Consensus       115 PRRP~W~~~~s~eeLd~~EkeaFlewrr~L~~-----Lqe~e~l----~lTpFErN--LE~WRQLWRVlErSDivvqIVD  183 (562)
T KOG1424|consen  115 PRRPPWTLEMSKEELDRQEKEAFLEWRRKLAS-----LQENEKL----VLTPFERN--LEIWRQLWRVLERSDIVVQIVD  183 (562)
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----hhhcCCe----eechhhhC--HHHHHHHHHHHhhcceEEEEee
Confidence            678888764 8888887776665555543222     1222322    35789999  9999999999999999999999


Q ss_pred             CCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC------C----------C
Q 018454          222 ARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK------S----------F  285 (355)
Q Consensus       222 ardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~------~----------~  285 (355)
                      ||+|...+|+.|+.|+.+...+|..+|++||+||+++.....|..||...+.-.+| -||..      +          .
T Consensus       184 ARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf-~SA~~at~~~~~~~~~e~~r~~d  262 (562)
T KOG1424|consen  184 ARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVF-FSALAATEQLESKVLKEDRRSLD  262 (562)
T ss_pred             cCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEE-Eecccccccccccchhhhhhccc
Confidence            99999999999999999877789999999999999999999999999887643333 34332      0          0


Q ss_pred             Ch------------HHHHHHHH-------HHHhh-----------h-ccccceEEEEeecCCCChhHHHHHhhccCcccc
Q 018454          286 GK------------GSLLSVLR-------QFARL-----------K-SDKQAISVGFVGYPNVGKSSVINTLRTKNVILF  334 (355)
Q Consensus       286 Gi------------~~Ll~~L~-------q~~~~-----------~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v  334 (355)
                      |.            +.++..+.       +...+           + ..+..++||+||||||||||+||+|.+.+++.|
T Consensus       263 ~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsV  342 (562)
T KOG1424|consen  263 GVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSV  342 (562)
T ss_pred             chhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeee
Confidence            11            10111000       00000           0 112359999999999999999999999999999


Q ss_pred             CCCCCeeEEE
Q 018454          335 FPASVVWYWF  344 (355)
Q Consensus       335 s~iPGtT~~~  344 (355)
                      |.+||.|+|+
T Consensus       343 S~TPGkTKHF  352 (562)
T KOG1424|consen  343 SSTPGKTKHF  352 (562)
T ss_pred             ecCCCCccee
Confidence            9999999653

>cd01858 NGP_1 NGP-1

Probab=99.96  E-value=1.1e-28  Score=216.15  Aligned_cols=143  Identities=66%  Similarity=1.106  Sum_probs=124.7

Q ss_pred             HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCC
Q 018454          205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ++|..++.+|+|++|+|+++|.++.+..+.+++.....++|+|+|+||+||++......|...+.+.++..++++|++++
T Consensus         1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~   80 (157)
T cd01858           1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP   80 (157)
T ss_pred             ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccc
Confidence            36788999999999999999998889999999875434699999999999998877788999998877776788999999


Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEEE
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYCQ  347 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~~  347 (355)
                      .|+++|++.|.+++.......++.|+|+|.||||||||||+|++...+.++++||+| ..+++.
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~  144 (157)
T cd01858          81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT  144 (157)
T ss_pred             ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE
Confidence            999999999998876544445789999999999999999999999999999999999 444444

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.94  E-value=2.7e-26  Score=219.49  Aligned_cols=148  Identities=28%  Similarity=0.384  Sum_probs=128.3

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCce
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL  275 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~  275 (355)
                      +||+.++++++.+.++.+|+||+|+|+++|.++.+..+++++    .++|+|+|+||+||++......|.+++... ...
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-~~~   79 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEK-GIK   79 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHc-CCe
Confidence            789999999999999999999999999999999998888877    368999999999999877677898888652 345


Q ss_pred             EEEeeecCCCChHHHHHHHHHHHhhhcc--------ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEE
Q 018454          276 AFHASINKSFGKGSLLSVLRQFARLKSD--------KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYC  346 (355)
Q Consensus       276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~--------~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~  346 (355)
                      ++.+|+.++.|+++|++.|.++++....        ...+.+++||+||||||||||+|.+.+.+.|++.||+| ..+++
T Consensus        80 vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~  159 (276)
T TIGR03596        80 ALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWI  159 (276)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEE
Confidence            6778999999999999999888765321        24688999999999999999999999999999999999 66666


Q ss_pred             EE
Q 018454          347 QL  348 (355)
Q Consensus       347 ~l  348 (355)
                      .+
T Consensus       160 ~~  161 (276)
T TIGR03596       160 KL  161 (276)
T ss_pred             Ee
Confidence            54

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK13796 GTPase YqeH; Provisional

Probab=99.94  E-value=4.7e-26  Score=225.98  Aligned_cols=155  Identities=30%  Similarity=0.349  Sum_probs=121.4

Q ss_pred             hhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCC-EEEEEecCCCCCCCcchHHHHHHHh
Q 018454          161 DGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSD-VVVQVLDARDPQGTRCHHLERHLKE  239 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sD-vVL~VvDardp~~s~~~~l~~~L~~  239 (355)
                      ..|||||+++||+++..+..+.++|..                  +.+.+..+| +|++|+|+.|+.++..+.+.+++  
T Consensus        35 ~~C~RC~~l~hy~~~~~~~~~~~~~~~------------------~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--   94 (365)
T PRK13796         35 VYCQRCFRLKHYNEIQDVSLTDDDFLK------------------LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--   94 (365)
T ss_pred             eEchhhhhhhccCcccCCCCCHHHHHH------------------HHHhhcccCcEEEEEEECccCCCchhHHHHHHh--
Confidence            479999999999988766555444432                  334455555 99999999999988877777665  


Q ss_pred             hcCCCcEEEEEeccCCCChh----hHHHHHHHHhhhCC---ceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEe
Q 018454          240 HCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFV  312 (355)
Q Consensus       240 ~~~~k~vILVlNK~DLvp~~----~~~~w~~~l~~~~p---~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~v  312 (355)
                        .++++++|+||+||++..    ....|...+.+...   ..++.+|+++++|+++|++.|.++.      .+..++||
T Consensus        95 --~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~------~~~~v~vv  166 (365)
T PRK13796         95 --GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYR------EGRDVYVV  166 (365)
T ss_pred             --CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhc------CCCeEEEE
Confidence              368999999999998743    34567776554432   3577889999999999999998764      24578999


Q ss_pred             ecCCCChhHHHHHhhcc-----CccccCCCCCeeEE
Q 018454          313 GYPNVGKSSVINTLRTK-----NVILFFPASVVWYW  343 (355)
Q Consensus       313 G~pNVGKSSLIN~Ll~~-----~~~~vs~iPGtT~~  343 (355)
                      |+||||||||||+|++.     ..+++|++||||++
T Consensus       167 G~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~  202 (365)
T PRK13796        167 GVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD  202 (365)
T ss_pred             cCCCCcHHHHHHHHHhhccCccceEEecCCCCccce
Confidence            99999999999999864     46789999999954

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.94  E-value=3.3e-26  Score=226.66  Aligned_cols=163  Identities=28%  Similarity=0.309  Sum_probs=126.0

Q ss_pred             HHhhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH
Q 018454          159 RADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK  238 (355)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~  238 (355)
                      ....|||||+++||+.+..+....++|..                 .+..+...+|+|++|+|+.|++++..+.+.+++ 
T Consensus        27 ~~~~C~RC~~l~hy~~~~~~~~~~e~f~~-----------------~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~-   88 (360)
T TIGR03597        27 EEVYCQRCFRLKHYNEIQDVELNDDDFLN-----------------LLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV-   88 (360)
T ss_pred             CCeeecchhhhhccCccccCCCCHHHHHH-----------------HHhhcccCCcEEEEEEECcCCCCCccHHHHHHh-
Confidence            34589999999999987766544444432                 233356788999999999999998888887776 


Q ss_pred             hhcCCCcEEEEEeccCCCChh----hHHHHHHHHhhhCC---ceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEE
Q 018454          239 EHCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGF  311 (355)
Q Consensus       239 ~~~~~k~vILVlNK~DLvp~~----~~~~w~~~l~~~~p---~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~  311 (355)
                         .++|+++|+||+||++..    ....|...+.+...   ..++.+||++++|+++|++.|.++.      .+..|+|
T Consensus        89 ---~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~------~~~~v~~  159 (360)
T TIGR03597        89 ---GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKAR------NKKDVYV  159 (360)
T ss_pred             ---CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHh------CCCeEEE
Confidence               368999999999998754    34556654333332   2477889999999999999998764      2468999


Q ss_pred             eecCCCChhHHHHHhhcc-----CccccCCCCCee-EEEEEEE
Q 018454          312 VGYPNVGKSSVINTLRTK-----NVILFFPASVVW-YWFYCQL  348 (355)
Q Consensus       312 vG~pNVGKSSLIN~Ll~~-----~~~~vs~iPGtT-~~~y~~l  348 (355)
                      ||.||||||||||+|++.     +.+++|+.|||| ..+++.+
T Consensus       160 vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~  202 (360)
T TIGR03597       160 VGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL  202 (360)
T ss_pred             ECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe
Confidence            999999999999999984     358999999999 4444443

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.94  E-value=9.1e-26  Score=217.00  Aligned_cols=147  Identities=27%  Similarity=0.375  Sum_probs=126.4

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCce
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL  275 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~  275 (355)
                      +||+.+.+++++++++.+|+||+|+|+++|.++.+..+++++.    ++|+++|+||+||++......|.+++... ...
T Consensus         8 pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~-~~~   82 (287)
T PRK09563          8 PGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQ-GIK   82 (287)
T ss_pred             HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHc-CCe
Confidence            7899999999999999999999999999999999888887763    68999999999999876667898888643 234


Q ss_pred             EEEeeecCCCChHHHHHHHHHHHhhhc--------cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEE
Q 018454          276 AFHASINKSFGKGSLLSVLRQFARLKS--------DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYC  346 (355)
Q Consensus       276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~~~--------~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~  346 (355)
                      ++.+|+.++.|+++|++.|.++++...        ....+.|+|||+||||||||||+|.+.+++.+++.||+| .++++
T Consensus        83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~  162 (287)
T PRK09563         83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI  162 (287)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence            567899999999999999988876532        135688999999999999999999999999999999999 44444


Q ss_pred             E
Q 018454          347 Q  347 (355)
Q Consensus       347 ~  347 (355)
                      .
T Consensus       163 ~  163 (287)
T PRK09563        163 K  163 (287)
T ss_pred             E
Confidence            4

>cd01855 YqeH YqeH

Probab=99.94  E-value=8.6e-26  Score=203.44  Aligned_cols=156  Identities=27%  Similarity=0.333  Sum_probs=116.2

Q ss_pred             hHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcC
Q 018454          163 SQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCK  242 (355)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~  242 (355)
                      |+|||+++||++......+..+                .+...+..+++++|+||+|+|++++..+....+...    ..
T Consensus         1 C~rC~~l~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~----~~   60 (190)
T cd01855           1 CQRCFRLKHYNKIDPVEIPDED----------------FILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLF----GG   60 (190)
T ss_pred             CcchhhhhccCccccccCChHH----------------HHHHHHHhcccCCcEEEEEEECccCCCccchhHHHh----cC
Confidence            9999999999977544322211                134556668899999999999999886666555221    24


Q ss_pred             CCcEEEEEeccCCCChhh----HHHHHHHH--hhh-C-CceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeec
Q 018454          243 HKHMILLLNKCDLVPAWA----TKGWLRVL--SKE-Y-PSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGY  314 (355)
Q Consensus       243 ~k~vILVlNK~DLvp~~~----~~~w~~~l--~~~-~-p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~  314 (355)
                      ++|+++|+||+||++...    ...|...+  ... . +..+|.+|++++.|+++|++.|.++++     ....++|||.
T Consensus        61 ~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~-----~~~~~~~~G~  135 (190)
T cd01855          61 NNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK-----KGGDVYVVGA  135 (190)
T ss_pred             CCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh-----cCCcEEEEcC
Confidence            789999999999986433    23344111  111 1 224678999999999999999988875     3467899999


Q ss_pred             CCCChhHHHHHhhccC--------ccccCCCCCeeEE
Q 018454          315 PNVGKSSVINTLRTKN--------VILFFPASVVWYW  343 (355)
Q Consensus       315 pNVGKSSLIN~Ll~~~--------~~~vs~iPGtT~~  343 (355)
                      ||||||||||+|++..        .+.+++.||||++
T Consensus       136 ~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~  172 (190)
T cd01855         136 TNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD  172 (190)
T ss_pred             CCCCHHHHHHHHHHhcccccccccccccCCCCCeeee
Confidence            9999999999999854        3678999999955

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.92  E-value=9.8e-25  Score=195.34  Aligned_cols=134  Identities=40%  Similarity=0.668  Sum_probs=108.0

Q ss_pred             CEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe--------------
Q 018454          214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA--------------  279 (355)
Q Consensus       214 DvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v--------------  279 (355)
                      |+|++|+|+++|+++.++.+.+++.-...++|+|+|+||+||+++.....|.+++.+.+++..|..              
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV   80 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence            899999999999999999999884211247999999999999999888999999988776655432              


Q ss_pred             ----------eecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeE-EEEEE
Q 018454          280 ----------SINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWY-WFYCQ  347 (355)
Q Consensus       280 ----------Sa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~-~~y~~  347 (355)
                                |+.++.|.+.|++.+.++.........+.|+|+|+||||||||||+|.+.+.+.+++.||+|+ .+++.
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~  159 (172)
T cd04178          81 KVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH  159 (172)
T ss_pred             ccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE
Confidence                      333455667777778776654434556899999999999999999999999999999999994 44443

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01856 YlqF YlqF

Probab=99.92  E-value=7.4e-24  Score=188.28  Aligned_cols=148  Identities=28%  Similarity=0.354  Sum_probs=121.8

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCce
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL  275 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~  275 (355)
                      +||+.++++++++.++++|+||+|+|+++|....+..+..++    .++++++|+||+||++......|.+++.... ..
T Consensus         3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~-~~   77 (171)
T cd01856           3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKG-EK   77 (171)
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcC-Ce
Confidence            678999999999999999999999999999877666655544    3689999999999987765567877766543 34


Q ss_pred             EEEeeecCCCChHHHHHHHHHHHhh-------hccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEEE
Q 018454          276 AFHASINKSFGKGSLLSVLRQFARL-------KSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYCQ  347 (355)
Q Consensus       276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~-------~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~~  347 (355)
                      ++.+|++++.|+++|.+.|.++.+.       ........++++|.||||||||||+|.+...+.++++||+| .++++.
T Consensus        78 vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~  157 (171)
T cd01856          78 VLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIK  157 (171)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEE
Confidence            6778999999999999999887531       11234578999999999999999999999989999999999 666555


Q ss_pred             E
Q 018454          348 L  348 (355)
Q Consensus       348 l  348 (355)
                      +
T Consensus       158 ~  158 (171)
T cd01856         158 I  158 (171)
T ss_pred             e
Confidence            4

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.90  E-value=6.1e-23  Score=179.46  Aligned_cols=133  Identities=41%  Similarity=0.561  Sum_probs=108.5

Q ss_pred             CEEEEEecCCCCCCCcchHHH-HHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHH
Q 018454          214 DVVVQVLDARDPQGTRCHHLE-RHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLS  292 (355)
Q Consensus       214 DvVL~VvDardp~~s~~~~l~-~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~  292 (355)
                      |+||+|+|+++|.++.+..+. .++..  .++|+|+|+||+||++......|..++....+..++.+|+.++.|+++|.+
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~   78 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES   78 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence            899999999999988887777 34443  579999999999999887677888777655566678899999999999999


Q ss_pred             HHHHHHhh--------hccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEEEE
Q 018454          293 VLRQFARL--------KSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYCQL  348 (355)
Q Consensus       293 ~L~q~~~~--------~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~~l  348 (355)
                      .|.+....        ........++++|+||||||||||+|.+...+.+++.||+| .++++.+
T Consensus        79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~  143 (155)
T cd01849          79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL  143 (155)
T ss_pred             HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe
Confidence            88654211        11235688999999999999999999999999999999999 6665543

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.89  E-value=1.3e-22  Score=174.81  Aligned_cols=120  Identities=40%  Similarity=0.558  Sum_probs=104.1

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeee
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      +|+++++.++.+|+||+|+|+++|..+.+..+.+++.....++|+++|+||+||++++....|.+++.... ..++.+|+
T Consensus         1 ~~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~-~~ii~iSa   79 (141)
T cd01857           1 VWRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG-IVVVFFSA   79 (141)
T ss_pred             CHHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC-CeEEEEEe
Confidence            47899999999999999999999999888899998876334799999999999998877778888887654 35677899


Q ss_pred             cCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454          282 NKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW  343 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~  343 (355)
                      .++.+                     .++|+|.||||||||||+|.+...+.++..||+|++
T Consensus        80 ~~~~~---------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~  120 (141)
T cd01857          80 LKENA---------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH  120 (141)
T ss_pred             cCCCc---------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccc
Confidence            87655                     579999999999999999999999999999999944

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01859 MJ1464 MJ1464

Probab=99.89  E-value=4.1e-22  Score=173.76  Aligned_cols=141  Identities=35%  Similarity=0.514  Sum_probs=111.6

Q ss_pred             HHHHHHhhhc-CCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEee
Q 018454          202 IWGELYKVID-SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       202 i~~el~kvi~-~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vS  280 (355)
                      +|+++.+.+. ++|+||+|+|+++|....+..+..++..  .++|+++|+||+|+++......|.... ......++.+|
T Consensus         1 ~~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~iS   77 (156)
T cd01859           1 MWKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIK-ESEGIPVVYVS   77 (156)
T ss_pred             CHHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHH-HhCCCcEEEEE
Confidence            3666766665 5999999999999887777777766643  479999999999998765555565332 22233467889


Q ss_pred             ecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEEE
Q 018454          281 INKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYCQ  347 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~~  347 (355)
                      ++++.|+++|++.|.++++.  ......+.+||.|||||||+||+|.+...+.++++||+| ..+++.
T Consensus        78 a~~~~gi~~L~~~l~~~~~~--~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~  143 (156)
T cd01859          78 AKERLGTKILRRTIKELAKI--DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK  143 (156)
T ss_pred             ccccccHHHHHHHHHHHHhh--cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE
Confidence            99999999999999988864  234577899999999999999999998889999999999 445544

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.88  E-value=4.6e-22  Score=198.48  Aligned_cols=149  Identities=21%  Similarity=0.218  Sum_probs=121.8

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      ..+.+|+..+++.||+||+|||++..+...+..+.++|+.  .++|+|+|+||+|-...+.   -...+-..+--.++.+
T Consensus        71 ~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~---~~~efyslG~g~~~~I  145 (444)
T COG1160          71 ELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAEE---LAYEFYSLGFGEPVPI  145 (444)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhhh---hHHHHHhcCCCCceEe
Confidence            6788999999999999999999999999999999999985  5799999999999763221   1122222233446788


Q ss_pred             eecCCCChHHHHHHHHHHHh--hhcc----ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeecc
Q 018454          280 SINKSFGKGSLLSVLRQFAR--LKSD----KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG  353 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~--~~~~----~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~~  353 (355)
                      ||.+|.|+++|++.+.+.++  +...    ..+++|++||.||||||||+|+|++..++.|+++||||+|--.+.+.|=|
T Consensus       146 SA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~  225 (444)
T COG1160         146 SAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG  225 (444)
T ss_pred             ehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC
Confidence            99999999999999998863  1111    14699999999999999999999999999999999999887776666544

>PRK12289 GTPase RsgA; Reviewed

Probab=99.80  E-value=5.7e-19  Score=174.46  Aligned_cols=128  Identities=26%  Similarity=0.296  Sum_probs=102.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK  287 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi  287 (355)
                      .+.++|+||+|+|+.+|... ...+++++.. +..++|+|||+||+||++......|.+.+... ...+|.+|+.++.|+
T Consensus        86 ~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~-g~~v~~iSA~tg~GI  163 (352)
T PRK12289         86 PVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQW-GYQPLFISVETGIGL  163 (352)
T ss_pred             hhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhc-CCeEEEEEcCCCCCH
Confidence            48999999999999987532 3356777654 34689999999999999876667888877543 335678899999999


Q ss_pred             HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC-------eeEEEEEEEee
Q 018454          288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV-------VWYWFYCQLLF  350 (355)
Q Consensus       288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG-------tT~~~y~~l~~  350 (355)
                      ++|++.|..         .+ ++|+|.||||||||||+|++...+.|+++||       ||++  ++|+.
T Consensus       164 ~eL~~~L~~---------ki-~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~--~~l~~  221 (352)
T PRK12289        164 EALLEQLRN---------KI-TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRH--VELFE  221 (352)
T ss_pred             HHHhhhhcc---------ce-EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCce--eEEEE
Confidence            999888752         13 6899999999999999999999999999999       7755  34543

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=99.77  E-value=2.1e-18  Score=164.99  Aligned_cols=144  Identities=27%  Similarity=0.287  Sum_probs=110.3

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCce
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL  275 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~  275 (355)
                      +||+....+.+.+.+...|+||.|-|||-|++++.+.+.+++.    .++-|+|+||+||.+.......++++..+.-..
T Consensus        30 pgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~----~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~  105 (335)
T KOG2485|consen   30 PGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP----PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLES  105 (335)
T ss_pred             chHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC----CCceEEEEecccccCchhhhHHHHHHHhhcccc
Confidence            6788899999999999999999999999999999999988874    689999999999999766666666666553222


Q ss_pred             EEEeeecC--CCChHHHHHHHHHHHhh----h-ccccceEEEEeecCCCChhHHHHHhhc-----cCccccCCCCCeeEE
Q 018454          276 AFHASINK--SFGKGSLLSVLRQFARL----K-SDKQAISVGFVGYPNVGKSSVINTLRT-----KNVILFFPASVVWYW  343 (355)
Q Consensus       276 ~f~vSa~~--~~Gi~~Ll~~L~q~~~~----~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~-----~~~~~vs~iPGtT~~  343 (355)
                      .+..++..  ..++..++..+..+..+    . .......|+|||.||||||||||+++.     .+.++|++.||.|+.
T Consensus       106 ~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~  185 (335)
T KOG2485|consen  106 YIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRR  185 (335)
T ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceee
Confidence            22223333  23355555554433322    1 124678899999999999999999874     578999999999955

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.76  E-value=5.5e-18  Score=159.74  Aligned_cols=119  Identities=26%  Similarity=0.259  Sum_probs=95.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSFG  286 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~G  286 (355)
                      .+.++|.+++|+|+.+|..+.. .+++++.. +..+.++++|+||+||.+... ...|.+.+.. ....+|.+|++++.|
T Consensus        33 ~~~n~D~viiV~d~~~p~~s~~-~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g~~v~~~SAktg~g  110 (245)
T TIGR00157        33 IVANIDQIVIVSSAVLPELSLN-QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IGYQVLMTSSKNQDG  110 (245)
T ss_pred             ccccCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHH-CCCeEEEEecCCchh
Confidence            6889999999999999886543 46666653 236899999999999986433 3467776654 334577899999999


Q ss_pred             hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454          287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV  339 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG  339 (355)
                      +++|++.|.+          ..++|+|.||||||||||+|++...+.|+++++
T Consensus       111 i~eLf~~l~~----------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~  153 (245)
T TIGR00157       111 LKELIEALQN----------RISVFAGQSGVGKSSLINALDPSVKQQVNDISS  153 (245)
T ss_pred             HHHHHhhhcC----------CEEEEECCCCCCHHHHHHHHhhhhhccccceec
Confidence            9999987752          245899999999999999999999999988875

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.76  E-value=6.6e-18  Score=172.92  Aligned_cols=146  Identities=23%  Similarity=0.140  Sum_probs=110.8

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEee
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vS  280 (355)
                      .+..++...+..+|+||+|+|++++....+..+..++..  .++|+|+|+||+|+.....  .....+...+ ...+.+|
T Consensus       106 ~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~~g~-~~~~~iS  180 (472)
T PRK03003        106 SVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWSLGL-GEPHPVS  180 (472)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHhcCC-CCeEEEE
Confidence            455666778899999999999999877666777777765  5799999999999864321  1111221111 2346899


Q ss_pred             ecCCCChHHHHHHHHHHHhhhc-----cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          281 INKSFGKGSLLSVLRQFARLKS-----DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~~~~-----~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      |++|.|+++|++.|.+.++...     ....+.|++||.||||||||||+|++...+.++++||+|++.+...+.+
T Consensus       181 A~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~  256 (472)
T PRK03003        181 ALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL  256 (472)
T ss_pred             cCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE
Confidence            9999999999999887765421     1346899999999999999999999998888999999997655444443

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.75  E-value=2.4e-17  Score=165.91  Aligned_cols=146  Identities=21%  Similarity=0.223  Sum_probs=115.2

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      ..+..++...+..+|+||+|+|++++....+..+.+++.+  .++|+++|+||+|+.......  .+ +.......+|.+
T Consensus        66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~~--~~-~~~lg~~~~~~v  140 (429)
T TIGR03594        66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAVA--AE-FYSLGFGEPIPI  140 (429)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccccH--HH-HHhcCCCCeEEE
Confidence            4566778888999999999999999887777788888876  579999999999997643211  11 222222346889


Q ss_pred             eecCCCChHHHHHHHHHHHhhhc-----cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454          280 SINKSFGKGSLLSVLRQFARLKS-----DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF  350 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~~~-----~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~  350 (355)
                      ||.++.|+++|++.+.+.++...     ....++|+++|.||||||||+|+|++...+.++++||+|++.+...+.
T Consensus       141 Sa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~  216 (429)
T TIGR03594       141 SAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFE  216 (429)
T ss_pred             eCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEE
Confidence            99999999999999987765421     234588999999999999999999999999999999999776544443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=3.3e-17  Score=165.44  Aligned_cols=146  Identities=22%  Similarity=0.226  Sum_probs=111.0

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEee
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vS  280 (355)
                      .+..++...+..+|+||+|+|++++....+..+.+++..  .++|+|+|+||+|+.....  ...+.+ ......++.+|
T Consensus        69 ~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iS  143 (435)
T PRK00093         69 QIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA--DAYEFY-SLGLGEPYPIS  143 (435)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh--hHHHHH-hcCCCCCEEEE
Confidence            355666778899999999999999877777777778776  4799999999999765221  111222 11212357789


Q ss_pred             ecCCCChHHHHHHHHHHHhhhc----cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          281 INKSFGKGSLLSVLRQFARLKS----DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~~~~----~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      +.++.|+++|++.+.+......    +...+.|+++|.||||||||+|+|++...+.++++||+|++.+...+.+
T Consensus       144 a~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~  218 (435)
T PRK00093        144 AEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER  218 (435)
T ss_pred             eeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE
Confidence            9999999999999876433211    2357999999999999999999999999999999999997765554444

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.73  E-value=3.5e-17  Score=175.24  Aligned_cols=149  Identities=21%  Similarity=0.156  Sum_probs=115.1

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      ..+..++...+..+|+||+|+|+++.....+..+.+++..  .++|+|+|+||+|+......  ..+.+...+ ...|.+
T Consensus       342 ~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~--~~~~~~lg~-~~~~~i  416 (712)
T PRK09518        342 SAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYD--AAEFWKLGL-GEPYPI  416 (712)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccchhh--HHHHHHcCC-CCeEEE
Confidence            4566778888999999999999998777767777777765  58999999999998653211  111111112 235788


Q ss_pred             eecCCCChHHHHHHHHHHHhhhc-------cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeec
Q 018454          280 SINKSFGKGSLLSVLRQFARLKS-------DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYF  352 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~~~-------~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~  352 (355)
                      ||.+|.|+++|++.|.+.++...       ....++|+++|.||||||||||+|++.....+++.||||++.+...+.|-
T Consensus       417 SA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~  496 (712)
T PRK09518        417 SAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID  496 (712)
T ss_pred             ECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEEC
Confidence            99999999999998887765421       12347999999999999999999999998889999999988877766654


Q ss_pred             c
Q 018454          353 G  353 (355)
Q Consensus       353 ~  353 (355)
                      |
T Consensus       497 ~  497 (712)
T PRK09518        497 G  497 (712)
T ss_pred             C
Confidence            4

>PRK12288 GTPase RsgA; Reviewed

Probab=99.70  E-value=1.5e-16  Score=157.12  Aligned_cols=119  Identities=26%  Similarity=0.233  Sum_probs=92.7

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChh---hHHHHHHHHhhhCCceEEEeeecC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAW---ATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~---~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      -+++++|.+++|.+.. |..+ ...+++|+.. +..++|+++|+||+||++..   ....|...+... ...+|.+|+.+
T Consensus       116 ~iaANvD~vlIV~s~~-p~~s-~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~-g~~v~~vSA~t  192 (347)
T PRK12288        116 PIAANIDQIVIVSAVL-PELS-LNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI-GYRVLMVSSHT  192 (347)
T ss_pred             eEEEEccEEEEEEeCC-CCCC-HHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence            3579999999888864 4433 2466777654 34578999999999998754   245666665443 34577889999


Q ss_pred             CCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454          284 SFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV  339 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG  339 (355)
                      +.|+++|++.|..         .+ ++|+|.||||||||||+|++...+.|+++|+
T Consensus       193 g~GideL~~~L~~---------ki-~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~  238 (347)
T PRK12288        193 GEGLEELEAALTG---------RI-SIFVGQSGVGKSSLINALLPEAEILVGDVSD  238 (347)
T ss_pred             CcCHHHHHHHHhh---------CC-EEEECCCCCCHHHHHHHhccccceeeccccC
Confidence            9999999988853         12 5899999999999999999999999999997

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.69  E-value=2e-16  Score=152.32  Aligned_cols=120  Identities=22%  Similarity=0.156  Sum_probs=92.4

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .-++.++|++|+|+|+.+|..+ ...+++++.. ...++|+++|+||+||++......|...+.. ....++.+|++++.
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-~g~~v~~vSA~~g~  150 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFN-PRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALA-LGYPVLAVSAKTGE  150 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHh-CCCeEEEEECCCCc
Confidence            3468999999999999988722 3466666653 2357999999999999876444455554433 23456778999999


Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS  338 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP  338 (355)
                      |+++|...|..          ..++|+|.+|||||||||+|++...+.++.++
T Consensus       151 gi~~L~~~L~~----------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~  193 (287)
T cd01854         151 GLDELREYLKG----------KTSVLVGQSGVGKSTLINALLPDLDLATGEIS  193 (287)
T ss_pred             cHHHHHhhhcc----------ceEEEECCCCCCHHHHHHHHhchhhcccccee
Confidence            99998887752          35799999999999999999998877777665

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.69  E-value=1.5e-16  Score=153.97  Aligned_cols=121  Identities=22%  Similarity=0.216  Sum_probs=94.0

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCC-hhhHHHHHHHHhhhCCceEEEeeecCC
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVP-AWATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ..+++++|++|+|+|+.+|.... ..+++++.. ...++|+++|+||+||.+ ......|...+... ...++.+|+.++
T Consensus        75 q~iaaniD~vllV~d~~~p~~~~-~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~-g~~v~~vSA~~g  152 (298)
T PRK00098         75 KLIAANVDQAVLVFAAKEPDFST-DLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAI-GYDVLELSAKEG  152 (298)
T ss_pred             cceeecCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            44689999999999999876442 234555532 236799999999999973 34445676666443 345678899999


Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV  339 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG  339 (355)
                      .|+++|++.|.          +..++|+|.||||||||||+|++...+.++++++
T Consensus       153 ~gi~~L~~~l~----------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~  197 (298)
T PRK00098        153 EGLDELKPLLA----------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE  197 (298)
T ss_pred             ccHHHHHhhcc----------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence            99999888763          2357899999999999999999999899999986

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.52  E-value=1.2e-13  Score=132.91  Aligned_cols=119  Identities=24%  Similarity=0.222  Sum_probs=92.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHH--HHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATK--GWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~--~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+.+.|-+|+|+-+.+|..+ ...|++||.- +..+...|+|+||+||++.....  .+...+.. .+..++.+|++++.
T Consensus        76 ~v~n~d~~iiIvs~~~P~~~-~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~-~gy~v~~~s~~~~~  153 (301)
T COG1162          76 PVANNDQAIIVVSLVDPDFN-TNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYED-IGYPVLFVSAKNGD  153 (301)
T ss_pred             cccccceEEEEEeccCCCCC-HHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHh-CCeeEEEecCcCcc
Confidence            45668888999999988755 3467788764 56789999999999999876554  34444433 34556778999999


Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV  339 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG  339 (355)
                      |+++|...|.         ..++ .|+|.+|||||||||+|.+.....|+.|.+
T Consensus       154 ~~~~l~~~l~---------~~~s-vl~GqSGVGKSSLiN~L~p~~~~~t~eIS~  197 (301)
T COG1162         154 GLEELAELLA---------GKIT-VLLGQSGVGKSTLINALLPELNQKTGEISE  197 (301)
T ss_pred             cHHHHHHHhc---------CCeE-EEECCCCCcHHHHHHhhCchhhhhhhhhcc
Confidence            9999888875         2344 699999999999999999988888888864

>PRK01889 GTPase RsgA; Reviewed

Probab=99.48  E-value=2.2e-13  Score=135.09  Aligned_cols=117  Identities=21%  Similarity=0.167  Sum_probs=87.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSFG  286 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~G  286 (355)
                      +++++|.|++|+++. |.. ....++++|.. +..+.+.+||+||+||++... ...|...+  .....+|.+|+.++.|
T Consensus       109 iaANvD~vliV~s~~-p~~-~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        109 IAANVDTVFIVCSLN-HDF-NLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG  184 (356)
T ss_pred             EEEeCCEEEEEEecC-CCC-ChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence            579999999999995 432 23467777664 446889999999999997521 22333333  1224567789999999


Q ss_pred             hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC
Q 018454          287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS  338 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP  338 (355)
                      +++|.+.|.         .+-.++|+|.||||||||||+|.+.....++.++
T Consensus       185 l~~L~~~L~---------~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~  227 (356)
T PRK01889        185 LDVLAAWLS---------GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVR  227 (356)
T ss_pred             HHHHHHHhh---------cCCEEEEECCCCccHHHHHHHHHHhcccceeeEE
Confidence            999888874         2346799999999999999999997777777665

>KOG1249 consensus Predicted GTPases [General function prediction only]

Probab=99.23  E-value=1.1e-11  Score=125.76  Aligned_cols=155  Identities=16%  Similarity=0.126  Sum_probs=111.3

Q ss_pred             hhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhh
Q 018454          161 DGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH  240 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~  240 (355)
                      ..|.+|..+.|++..+.+......|.+.                 .-+..++-.++..|+|..|.+.+..+.+...+.  
T Consensus        76 ~~cpgc~~l~~~~~~~~~~v~~~~y~k~-----------------~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~--  136 (572)
T KOG1249|consen   76 IVCPGCGFLEHMRAALAVPVVPGEYKKE-----------------KSEKQENPALARKVVDLSDEPCSIDPLLTNDVG--  136 (572)
T ss_pred             ccCCcchHHHHhhhhccCccChhhhhhh-----------------hhhhhhcccceEEeeecccCccccccchhhccc--
Confidence            3699999999999877665555555432                 122334456788899999888887777777764  


Q ss_pred             cCCCcEEEEEeccCCCChhhHHHHHHHHhh--------------hCCce----EEEeeecCCCChHHHHHHHHHHHhhhc
Q 018454          241 CKHKHMILLLNKCDLVPAWATKGWLRVLSK--------------EYPSL----AFHASINKSFGKGSLLSVLRQFARLKS  302 (355)
Q Consensus       241 ~~~k~vILVlNK~DLvp~~~~~~w~~~l~~--------------~~p~~----~f~vSa~~~~Gi~~Ll~~L~q~~~~~~  302 (355)
                        ...+++++||+||+|.....-...++..              .+|..    +..+|++++.|+++|+-.|......  
T Consensus       137 --~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~df--  212 (572)
T KOG1249|consen  137 --SPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVDF--  212 (572)
T ss_pred             --CCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheeec--
Confidence              3458999999999997652111111111              12211    2246889999999999999876642  


Q ss_pred             cccceEEEEeecCCCChhHHHHHhhccCcc-----------ccCCCCCee
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTKNVI-----------LFFPASVVW  341 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-----------~vs~iPGtT  341 (355)
                         ..+++++|+.||||||++|+|+..+.|           +++++||||
T Consensus       213 ---~Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTt  259 (572)
T KOG1249|consen  213 ---RGDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTT  259 (572)
T ss_pred             ---cCceeeeeecccchhhHHHHHhhhccccccccceeeeeecccCCccc
Confidence               356899999999999999999987644           789999998

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.01  E-value=4.7e-10  Score=113.06  Aligned_cols=47  Identities=23%  Similarity=0.270  Sum_probs=42.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF  350 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~  350 (355)
                      +.++++.++|.||||||||+|+|+++..+.|++|||||||.--.-+.
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~  261 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDIN  261 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEE
Confidence            57899999999999999999999999999999999999886544443

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.95  E-value=8e-09  Score=104.03  Aligned_cols=135  Identities=19%  Similarity=0.243  Sum_probs=104.4

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHHHHHHHhhhCC----ce
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVLSKEYP----SL  275 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~w~~~l~~~~p----~~  275 (355)
                      ...++.+.|+.||+|++|+||..|....+..+..++.+  .++++|+|+||+|++..  ...+.+...+...++    ..
T Consensus       250 Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~  327 (444)
T COG1160         250 SVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAP  327 (444)
T ss_pred             eehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCe
Confidence            34678889999999999999999999999999999876  68999999999999986  445666666666544    44


Q ss_pred             EEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCcccc-CCCC-Cee-EEEEEEEeee
Q 018454          276 AFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILF-FPAS-VVW-YWFYCQLLFY  351 (355)
Q Consensus       276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v-s~iP-GtT-~~~y~~l~~~  351 (355)
                      ++++||+++.|++.|++.+.+......-  .+           .+|++|..+......- .|+. |.. +-.|.+...+
T Consensus       328 i~~iSA~~~~~i~~l~~~i~~~~~~~~~--ri-----------~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~~~  393 (444)
T COG1160         328 IVFISALTGQGLDKLFEAIKEIYECATR--RI-----------STSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQVST  393 (444)
T ss_pred             EEEEEecCCCChHHHHHHHHHHHHHhcc--cc-----------CHHHHHHHHHHHHHhCCCCccCCceEEEEEEecCCC
Confidence            6788999999999999998877654332  22           2889999887654443 2333 666 8888876654

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.91  E-value=1.1e-08  Score=91.90  Aligned_cols=101  Identities=24%  Similarity=0.263  Sum_probs=72.9

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh---hHHHHHHHHhhhC
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW---ATKGWLRVLSKEY  272 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~---~~~~w~~~l~~~~  272 (355)
                      +||. .+..++...+..+|++|+|+|+.++...........+..  .+.|+|+|+||+|++...   ..+++...+.+.+
T Consensus        78 PG~~-~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~  154 (188)
T PF00009_consen   78 PGHE-DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEY  154 (188)
T ss_dssp             SSSH-HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHT
T ss_pred             cccc-ceeecccceecccccceeeeecccccccccccccccccc--cccceEEeeeeccchhhhHHHHHHHHHHHhcccc
Confidence            5663 467778888999999999999998876655555555554  578999999999998432   1233333332221


Q ss_pred             ------CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          273 ------PSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       273 ------p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                            ...++++|+.+|+|+++|++.|.+++|
T Consensus       155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  155 GENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence                  235788999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG1159 Era GTPase [General function prediction only]

Probab=98.88  E-value=1.5e-08  Score=97.22  Aligned_cols=100  Identities=20%  Similarity=0.234  Sum_probs=85.1

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCC-ceEE
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYP-SLAF  277 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p-~~~f  277 (355)
                      +.+.+.+++.+..+|+|++|+|+.++.+..+..+.+.++.  .+.|+|+++||+|.++... .....+.+....+ ..++
T Consensus        73 ~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~iv  150 (298)
T COG1159          73 ELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIV  150 (298)
T ss_pred             HHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEE
Confidence            4677899999999999999999999999988888888875  4689999999999998765 4566666666655 3678


Q ss_pred             EeeecCCCChHHHHHHHHHHHhhh
Q 018454          278 HASINKSFGKGSLLSVLRQFARLK  301 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~~~~  301 (355)
                      .+||+++.|++.|++.+..++++.
T Consensus       151 piSA~~g~n~~~L~~~i~~~Lpeg  174 (298)
T COG1159         151 PISALKGDNVDTLLEIIKEYLPEG  174 (298)
T ss_pred             EeeccccCCHHHHHHHHHHhCCCC
Confidence            899999999999999999998864

>TIGR00436 era GTP-binding protein Era

Probab=98.88  E-value=1.8e-08  Score=96.08  Aligned_cols=97  Identities=13%  Similarity=0.023  Sum_probs=72.5

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-ceEEEe
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-SLAFHA  279 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-~~~f~v  279 (355)
                      .+.+.+...+..+|+|++|+|+.++.... ..+...+..  .++|+++|+||+|+++......+...+....+ ..+|.+
T Consensus        68 ~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~i  144 (270)
T TIGR00436        68 LMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPI  144 (270)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEE
Confidence            35566778899999999999999865432 445555544  57899999999999865544444444443333 257889


Q ss_pred             eecCCCChHHHHHHHHHHHhh
Q 018454          280 SINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ||++|.|+++|++.|.++++.
T Consensus       145 SA~~g~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       145 SALTGDNTSFLAAFIEVHLPE  165 (270)
T ss_pred             ecCCCCCHHHHHHHHHHhCCC
Confidence            999999999999999998864

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01894 EngA1 EngA1 subfamily

Probab=98.85  E-value=3.3e-08  Score=84.06  Aligned_cols=93  Identities=22%  Similarity=0.257  Sum_probs=70.6

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      ..++++....+..+|++++|+|++++.......+.+++..  .+.|+++|+||+|+.+....   ...+.......++.+
T Consensus        64 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~  138 (157)
T cd01894          64 KEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPI  138 (157)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEE
Confidence            4566677778899999999999998877767677777765  46999999999999876543   122222222356789


Q ss_pred             eecCCCChHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~  297 (355)
                      |++++.|+++|++.|.+.
T Consensus       139 Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         139 SAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             ecccCCCHHHHHHHHHhh
Confidence            999999999999988653

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=3.5e-09  Score=107.12  Aligned_cols=50  Identities=26%  Similarity=0.320  Sum_probs=44.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeecc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG  353 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~~  353 (355)
                      +.++.|+++|.||||||||+|+|.++.+..|||+||||||---+.+..-|
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G  315 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG  315 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC
Confidence            46799999999999999999999999999999999999887666665544

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.77  E-value=4.1e-08  Score=85.53  Aligned_cols=91  Identities=21%  Similarity=0.196  Sum_probs=74.9

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC-hhhHHHHHHHHhhhCCceEEE
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP-AWATKGWLRVLSKEYPSLAFH  278 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~~~p~~~f~  278 (355)
                      .+++..+.....++|+|++|.|+.++....++.+...+     ++|+|-|+||+|+.+ ....+.-.+.|...+...+|.
T Consensus        51 ~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~  125 (143)
T PF10662_consen   51 PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFE  125 (143)
T ss_pred             HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEE
Confidence            67888888899999999999999999988888887665     589999999999983 333444445565555566799


Q ss_pred             eeecCCCChHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLR  295 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~  295 (355)
                      +|+.++.|+++|.++|+
T Consensus       126 vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  126 VSAVTGEGIEELKDYLE  142 (143)
T ss_pred             EECCCCcCHHHHHHHHh
Confidence            99999999999999885

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01895 EngA2 EngA2 subfamily

Probab=98.75  E-value=9.3e-08  Score=82.22  Aligned_cols=91  Identities=22%  Similarity=0.333  Sum_probs=68.9

Q ss_pred             HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHHHHHHHhhhCC----ceEEE
Q 018454          205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVLSKEYP----SLAFH  278 (355)
Q Consensus       205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~w~~~l~~~~p----~~~f~  278 (355)
                      .....+..+|++++|+|+.++.......+..++..  .++|+++|+||+|+.+.  .....+.+.+....+    ..++.
T Consensus        77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895          77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence            34456789999999999999877655555555543  47899999999999876  445555666655443    45788


Q ss_pred             eeecCCCChHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      +|++++.|+.++++.+.+.
T Consensus       155 ~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         155 ISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EeccCCCCHHHHHHHHHHh
Confidence            8999999999999988754

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.74  E-value=1.7e-07  Score=94.48  Aligned_cols=129  Identities=21%  Similarity=0.224  Sum_probs=87.2

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC-ChhhHHHHHHHHhhhC----CceEEE
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV-PAWATKGWLRVLSKEY----PSLAFH  278 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv-p~~~~~~w~~~l~~~~----p~~~f~  278 (355)
                      .+....+..+|++|+|+|+.++....+..+...+..  .++|+|+|+||+||+ .........+.+....    ...++.
T Consensus       246 ~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       246 LRTLKAIERADVVLLVLDATEGITEQDLRIAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence            445668899999999999999877766666666654  579999999999998 4444444445554432    245678


Q ss_pred             eeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCcccc-CCC-CCee-EEEEEE
Q 018454          279 ASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILF-FPA-SVVW-YWFYCQ  347 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v-s~i-PGtT-~~~y~~  347 (355)
                      +||++|.|+++|++.+.........+  +           .++.+|.++....... .|. -|.. +..|++
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~~~~~--i-----------~t~~ln~~l~~~~~~~~~p~~~~~~~k~~y~~  382 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYENANRR--I-----------STSKLNRVLEEAVAAHPPPLVNGRRLKIKYAT  382 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhcCc--C-----------CHHHHHHHHHHHHHcCCCCCCCCceeeEEEEE
Confidence            99999999999999988766432211  1           3567777775432221 222 2444 677765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.74  E-value=8.7e-08  Score=81.22  Aligned_cols=88  Identities=23%  Similarity=0.183  Sum_probs=59.8

Q ss_pred             HHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHH-HhhhCCceEEEeee
Q 018454          203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRV-LSKEYPSLAFHASI  281 (355)
Q Consensus       203 ~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~-l~~~~p~~~f~vSa  281 (355)
                      ++.+...+..+|++|+|+|+.++.......+...     ..+|+|+|+||+||.+.....+.... +.......+|.+|+
T Consensus        53 ~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  127 (142)
T TIGR02528        53 YSALIVTAADADVIALVQSATDPESRFPPGFASI-----FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISS  127 (142)
T ss_pred             HHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh-----ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEec
Confidence            4444456899999999999999887655433332     23599999999999764322222222 22222234678899


Q ss_pred             cCCCChHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLR  295 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~  295 (355)
                      +++.|+++|++.|.
T Consensus       128 ~~~~gi~~l~~~l~  141 (142)
T TIGR02528       128 VDEQGLEALVDYLN  141 (142)
T ss_pred             CCCCCHHHHHHHHh
Confidence            99999999988763

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01898 Obg Obg subfamily

Probab=98.72  E-value=5.4e-08  Score=84.43  Aligned_cols=95  Identities=22%  Similarity=0.233  Sum_probs=65.8

Q ss_pred             HHHHHhhhcCCCEEEEEecCCCCC-CC-cchHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhC-CceE
Q 018454          203 WGELYKVIDSSDVVVQVLDARDPQ-GT-RCHHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEY-PSLA  276 (355)
Q Consensus       203 ~~el~kvi~~sDvVL~VvDardp~-~s-~~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~-p~~~  276 (355)
                      ....++.+..+|++|+|+|+.++. .. ....+.+.+...   ..++|+++|+||+|+.+......|...+.... ...+
T Consensus        69 ~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  148 (170)
T cd01898          69 GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPV  148 (170)
T ss_pred             hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCE
Confidence            344555677899999999999872 21 112233333321   13689999999999988766666666554442 4457


Q ss_pred             EEeeecCCCChHHHHHHHHHH
Q 018454          277 FHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       277 f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      +.+|++++.|+++|++.|.+.
T Consensus       149 ~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         149 FPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             EEEecCCCCCHHHHHHHHHhh
Confidence            788999999999999988654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK00089 era GTPase Era; Reviewed

Probab=98.70  E-value=1.5e-07  Score=90.28  Aligned_cols=98  Identities=24%  Similarity=0.240  Sum_probs=75.0

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC-ChhhHHHHHHHHhhhCC-ceEEE
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV-PAWATKGWLRVLSKEYP-SLAFH  278 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv-p~~~~~~w~~~l~~~~p-~~~f~  278 (355)
                      .+...+...+..+|++++|+|+.++.......+.+.+..  .++|+++|+||+|++ +........+.+...++ ..+|.
T Consensus        73 ~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~  150 (292)
T PRK00089         73 AMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVP  150 (292)
T ss_pred             HHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEE
Confidence            345566778899999999999998666555556555553  468999999999999 44555556666655444 45788


Q ss_pred             eeecCCCChHHHHHHHHHHHhh
Q 018454          279 ASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      +|++++.|+++|++.|.++++.
T Consensus       151 iSA~~~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        151 ISALKGDNVDELLDVIAKYLPE  172 (292)
T ss_pred             ecCCCCCCHHHHHHHHHHhCCC
Confidence            9999999999999999988754

>cd04171 SelB SelB subfamily

Probab=98.69  E-value=2e-07  Score=79.92  Aligned_cols=95  Identities=18%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh----HHHHHHHHhhh--CCc
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRVLSKE--YPS  274 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~~--~p~  274 (355)
                      ++...+...+..+|++|+|+|+++............+.. ...+|+++|+||+|+.+...    ..++.+.+...  ...
T Consensus        63 ~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  141 (164)
T cd04171          63 KFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADA  141 (164)
T ss_pred             HHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCC
Confidence            344556667889999999999987543322222223322 12359999999999986532    23344444432  235


Q ss_pred             eEEEeeecCCCChHHHHHHHHH
Q 018454          275 LAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       275 ~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      .++.+|++++.|+++|++.|..
T Consensus       142 ~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         142 PIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             cEEEEeCCCCcCHHHHHHHHhh
Confidence            6788999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.69  E-value=3.4e-07  Score=92.69  Aligned_cols=128  Identities=20%  Similarity=0.221  Sum_probs=87.9

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEe
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHA  279 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~v  279 (355)
                      ......+..+|++|+|+|+.++....+..+..++..  .++|+|+|+||+|+++......+.+.+....    ...++.+
T Consensus       247 ~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~  324 (435)
T PRK00093        247 IRTLKAIERADVVLLVIDATEGITEQDLRIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFI  324 (435)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEE
Confidence            455678899999999999999887776666666654  4799999999999986654455555554432    2456788


Q ss_pred             eecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC---Cee-EEEEEE
Q 018454          280 SINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS---VVW-YWFYCQ  347 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP---GtT-~~~y~~  347 (355)
                      ||+++.|+++|++.+.+.......+  +           .++.+|.++....... |-|   |.. +..|++
T Consensus       325 SA~~~~gv~~l~~~i~~~~~~~~~~--i-----------~t~~ln~~l~~~~~~~-~~p~~~~~~~k~~~~~  382 (435)
T PRK00093        325 SALTGQGVDKLLEAIDEAYENANRR--I-----------STSVLNRVLEEAVERH-PPPLVKGRRLKIKYAT  382 (435)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHcCc--C-----------ChHHHHHHHHHHHHcC-CCCCCCCeeeeEEEEE
Confidence            9999999999999987765432211  1           2566777776432222 223   433 666665

>PRK15494 era GTPase Era; Provisional

Probab=98.67  E-value=1.4e-07  Score=93.24  Aligned_cols=97  Identities=22%  Similarity=0.286  Sum_probs=72.1

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-ceEEEe
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-SLAFHA  279 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-~~~f~v  279 (355)
                      .+.+.++..+..+|+||+|+|+.++.......+...+..  .+.|+|+|+||+||.... .....+.+....+ ..+|.+
T Consensus       120 ~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~i  196 (339)
T PRK15494        120 AMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPI  196 (339)
T ss_pred             HHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEE
Confidence            456667778899999999999988765544445555543  467889999999997542 3334444444443 467889


Q ss_pred             eecCCCChHHHHHHHHHHHhh
Q 018454          280 SINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ||++|.|+++|++.|.+.+++
T Consensus       197 SAktg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        197 SALSGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             eccCccCHHHHHHHHHHhCCC
Confidence            999999999999999988875

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.66  E-value=3.1e-07  Score=94.47  Aligned_cols=128  Identities=16%  Similarity=0.121  Sum_probs=85.6

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH----HHHHHhhhCCceEEEeeec
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG----WLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~----w~~~l~~~~p~~~f~vSa~  282 (355)
                      ...+..+|++|+|+|+.++....+..+...+..  .++|+|+|+||+||++......    ....+.......++.+||+
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk  365 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK  365 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence            346789999999999999876655555555544  5799999999999986432211    1122222122346778999


Q ss_pred             CCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCC-C-CCee-EEEEEEEe
Q 018454          283 KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-A-SVVW-YWFYCQLL  349 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~-i-PGtT-~~~y~~l~  349 (355)
                      +|.|+++|++.+.+.......    .|         .++.+|.++........| . -|.. +-.|+|-+
T Consensus       366 ~g~gv~~lf~~i~~~~~~~~~----~i---------~t~~ln~~~~~~~~~~~~p~~~g~~~k~~y~~q~  422 (472)
T PRK03003        366 TGRAVDKLVPALETALESWDT----RI---------PTGRLNAWLGELVAATPPPVRGGKQPRILFATQA  422 (472)
T ss_pred             CCCCHHHHHHHHHHHHHHhcc----cC---------CHHHHHHHHHHHHHcCCCCCCCCeeeeEEEEECC
Confidence            999999999999877653221    21         378889888765433332 1 2555 78887743

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.65  E-value=2.4e-07  Score=86.34  Aligned_cols=99  Identities=17%  Similarity=0.097  Sum_probs=70.3

Q ss_pred             cchHHHHHHHHHhhhc--CCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH----HHHHHh
Q 018454          196 KGQSKRIWGELYKVID--SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG----WLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~--~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~----w~~~l~  269 (355)
                      +|+ .++.+.+...+.  .+|++++|+|+.+++...+..+..++..  .++|+++|+||+|+++......    +.+.+.
T Consensus        92 pG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~  168 (224)
T cd04165          92 AGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA--LNIPVFVVVTKIDLAPANILQETLKDLKRILK  168 (224)
T ss_pred             CCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEECccccCHHHHHHHHHHHHHHhc
Confidence            454 344555565564  6899999999998877666667777665  5799999999999987654333    333332


Q ss_pred             hh-------------------------CCceEEEeeecCCCChHHHHHHHHHH
Q 018454          270 KE-------------------------YPSLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       270 ~~-------------------------~p~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      ..                         .-..+|.+|+.+|.|++.|.+.|..+
T Consensus       169 ~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l  221 (224)
T cd04165         169 VPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL  221 (224)
T ss_pred             CCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence            10                         01257788999999999999988754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.65  E-value=3.1e-07  Score=83.75  Aligned_cols=102  Identities=17%  Similarity=0.136  Sum_probs=67.1

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh---
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE---  271 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~---  271 (355)
                      +|+ .++.......+..+|++|+|+|+.++. ..........+.. ....|+|+|+||+||+.........+.+...   
T Consensus        91 PG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~  168 (203)
T cd01888          91 PGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKG  168 (203)
T ss_pred             CCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhc
Confidence            444 456777788889999999999999852 2222223333322 2235789999999998754322222222221   


Q ss_pred             ---CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          272 ---YPSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       272 ---~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                         ....+|.+||+++.|+++|++.|.+.++
T Consensus       169 ~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         169 TIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence               1345788899999999999999987654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04163 Era Era subfamily

Probab=98.64  E-value=3.5e-07  Score=77.63  Aligned_cols=92  Identities=27%  Similarity=0.320  Sum_probs=71.8

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC-ChhhHHHHHHHHhhhCC-ceEEEeee
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV-PAWATKGWLRVLSKEYP-SLAFHASI  281 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv-p~~~~~~w~~~l~~~~p-~~~f~vSa  281 (355)
                      ......+..+|++++|+|+.++.......+...+..  .+.|+++|+||+|+. .......+...+....+ ..++.+|+
T Consensus        74 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~  151 (168)
T cd04163          74 KAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISA  151 (168)
T ss_pred             HHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEe
Confidence            344567889999999999999865555566666654  358999999999998 45556677777776664 56788899


Q ss_pred             cCCCChHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQF  297 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~  297 (355)
                      +++.|+++|++.|.++
T Consensus       152 ~~~~~~~~l~~~l~~~  167 (168)
T cd04163         152 LKGENVDELLEEIVKY  167 (168)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.63  E-value=1.1e-07  Score=84.62  Aligned_cols=67  Identities=25%  Similarity=0.186  Sum_probs=46.5

Q ss_pred             HHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454          262 KGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV  339 (355)
Q Consensus       262 ~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG  339 (355)
                      ++|.+.+... ...++.+|++++.|+++|.+.|..          -.+.|+|.+|||||||||+|++.....|+.+..
T Consensus         2 ~~~~~~y~~~-gy~v~~~S~~~~~g~~~l~~~l~~----------k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~   68 (161)
T PF03193_consen    2 EELLEQYEKL-GYPVFFISAKTGEGIEELKELLKG----------KTSVLLGQSGVGKSSLINALLPEAKQKTGEISE   68 (161)
T ss_dssp             HHHHHHHHHT-TSEEEE-BTTTTTTHHHHHHHHTT----------SEEEEECSTTSSHHHHHHHHHTSS----S----
T ss_pred             HHHHHHHHHc-CCcEEEEeCCCCcCHHHHHHHhcC----------CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhc
Confidence            4566777654 334677899999999998888752          345899999999999999999988888877753

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG2262 HflX GTPases [General function prediction only]

Probab=98.62  E-value=1.7e-07  Score=93.35  Aligned_cols=116  Identities=21%  Similarity=0.239  Sum_probs=81.7

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP  273 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p  273 (355)
                      |.+....++.+.+.+..+|++|||||+.||....- ....+.|.+ ...++|+|+|+||+|+++....   ...+....|
T Consensus       255 P~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~  331 (411)
T COG2262         255 PHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSP  331 (411)
T ss_pred             ChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCC
Confidence            56667888999999999999999999999943221 223334443 2356899999999999976642   222222234


Q ss_pred             ceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCC
Q 018454          274 SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVG  318 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVG  318 (355)
                       .++.+||.++.|++.|.+.|...+....  .... ..+.+.+.|
T Consensus       332 -~~v~iSA~~~~gl~~L~~~i~~~l~~~~--~~~~-l~lp~~~~~  372 (411)
T COG2262         332 -NPVFISAKTGEGLDLLRERIIELLSGLR--TEVT-LELPYTDAG  372 (411)
T ss_pred             -CeEEEEeccCcCHHHHHHHHHHHhhhcc--cceE-EEcCccccc
Confidence             5677899999999999999988776322  2223 455666777

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.61  E-value=1.9e-07  Score=91.93  Aligned_cols=97  Identities=24%  Similarity=0.271  Sum_probs=69.1

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcc----hHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCc
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRC----HHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPS  274 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~----~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~  274 (355)
                      +..+.++.++.+|++|+|+|+.+...+..    ..+.+.+...   ..++|+++|+||+||.+......+.+.+.+....
T Consensus       225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~  304 (329)
T TIGR02729       225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGK  304 (329)
T ss_pred             HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCC
Confidence            44566677899999999999987532111    1222223221   2468999999999998776555666666555455


Q ss_pred             eEEEeeecCCCChHHHHHHHHHHH
Q 018454          275 LAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       275 ~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      .++.+||+++.|+++|++.|.+.+
T Consensus       305 ~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       305 PVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             cEEEEEccCCcCHHHHHHHHHHHh
Confidence            678899999999999999987654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.61  E-value=3.6e-07  Score=80.23  Aligned_cols=94  Identities=19%  Similarity=0.138  Sum_probs=65.4

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH---H-HHHHhhh--------
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG---W-LRVLSKE--------  271 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~---w-~~~l~~~--------  271 (355)
                      ......+..+|.+++|+|+.++.......+..++..  .++|+++|+||+|+........   + .+.+...        
T Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          77 SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            334456779999999999998765544444444443  5799999999999987432222   2 2222221        


Q ss_pred             -----CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          272 -----YPSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       272 -----~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                           ....+|.+|++++.|++++++.|.+.++
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                 2345678999999999999999987653

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.60  E-value=4.1e-08  Score=81.06  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=33.1

Q ss_pred             EEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW  343 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~  343 (355)
                      +|+|+|.||||||||||+|.+.+.+.+++.||+|++
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~   36 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRD   36 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSS
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceee
Confidence            479999999999999999999888999999999844

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.60  E-value=3.5e-07  Score=78.12  Aligned_cols=84  Identities=24%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454          211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL  290 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L  290 (355)
                      +.+|++|+|+|+.++..  ...+...+..  .++|+++|+||+|+.+......+...+.......++.+|+.++.|+.+|
T Consensus        73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l  148 (158)
T cd01879          73 EKPDLIVNVVDATNLER--NLYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDEL  148 (158)
T ss_pred             CCCcEEEEEeeCCcchh--HHHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHH
Confidence            68999999999987643  2233333333  4799999999999986544444444554444556788999999999999


Q ss_pred             HHHHHHHH
Q 018454          291 LSVLRQFA  298 (355)
Q Consensus       291 l~~L~q~~  298 (355)
                      ++.|.++.
T Consensus       149 ~~~l~~~~  156 (158)
T cd01879         149 KDAIAELA  156 (158)
T ss_pred             HHHHHHHh
Confidence            99987654

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.59  E-value=3.1e-07  Score=90.69  Aligned_cols=100  Identities=18%  Similarity=0.191  Sum_probs=67.7

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh---cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCce
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH---CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSL  275 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~  275 (355)
                      .+..+.++.++.+|++|+|+|+.++.... ...+...|...   ..++|+|+|+||+||.+... .....+.+.......
T Consensus       225 gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~  304 (335)
T PRK12299        225 GLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGP  304 (335)
T ss_pred             cHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC
Confidence            35567777899999999999998765211 12233333321   13689999999999986543 222222222233455


Q ss_pred             EEEeeecCCCChHHHHHHHHHHHhh
Q 018454          276 AFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      +|.+||+++.|+++|++.|.+.+..
T Consensus       305 i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        305 VFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            7889999999999999999887754

>cd01890 LepA LepA subfamily

Probab=98.58  E-value=4.8e-07  Score=79.40  Aligned_cols=92  Identities=21%  Similarity=0.158  Sum_probs=60.5

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEee
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~vS  280 (355)
                      ......+..+|++|+|+|+.++...........+..  .++|+++|+||+|+.....   ...+.+.+. ..+..+|.+|
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~S  158 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADPERVKQQIEDVLG-LDPSEAILVS  158 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCHHHHHHHHHHHhC-CCcccEEEee
Confidence            344456778999999999998654433222222222  4789999999999864321   122222221 1123468899


Q ss_pred             ecCCCChHHHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~  298 (355)
                      |++|.|+++|++.|.+.+
T Consensus       159 a~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         159 AKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ccCCCCHHHHHHHHHhhC
Confidence            999999999999987654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01889 SelB_euk SelB subfamily

Probab=98.57  E-value=6.2e-07  Score=80.60  Aligned_cols=97  Identities=21%  Similarity=0.146  Sum_probs=65.9

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh----HHHHHHHHhhh-----
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRVLSKE-----  271 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~~-----  271 (355)
                      .+++..+..+..+|.+++|+|+.+...........+...  .+.|+++|+||+|++....    .+.+.+.+...     
T Consensus        80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  157 (192)
T cd01889          80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR  157 (192)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            466777777889999999999987653322222222221  3689999999999985432    23333333221     


Q ss_pred             -CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          272 -YPSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       272 -~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                       ....++.+|++++.|+++|++.|....+
T Consensus       158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             2345788999999999999999986553

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.56  E-value=5.6e-07  Score=78.97  Aligned_cols=94  Identities=18%  Similarity=0.202  Sum_probs=65.6

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-ceEEEe
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-SLAFHA  279 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-~~~f~v  279 (355)
                      +..+.+...+..+|++|+|+|+.++.......+...    ..++|+++|+||+|+... ....+.+.+.+... ..+|.+
T Consensus        53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~  127 (158)
T PRK15467         53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFEL  127 (158)
T ss_pred             HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEE
Confidence            345566667899999999999998765444333322    246899999999998543 23333333333322 357788


Q ss_pred             eecCCCChHHHHHHHHHHHh
Q 018454          280 SINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      |++++.|+++|++.|.+...
T Consensus       128 Sa~~g~gi~~l~~~l~~~~~  147 (158)
T PRK15467        128 NSHDPQSVQQLVDYLASLTK  147 (158)
T ss_pred             ECCCccCHHHHHHHHHHhch
Confidence            99999999999999987763

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.55  E-value=4.1e-07  Score=78.86  Aligned_cols=84  Identities=18%  Similarity=0.149  Sum_probs=57.0

Q ss_pred             CCEEEEEecCCCCCCCcch---HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHH
Q 018454          213 SDVVVQVLDARDPQGTRCH---HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGS  289 (355)
Q Consensus       213 sDvVL~VvDardp~~s~~~---~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~  289 (355)
                      +|++|+|+|+.++......   .+...+.....+.|+|+|+||+|+........ ...+.......+|.+||+++.|+++
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEELEGEEVLKISTLTEEGVDE  158 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhhccCceEEEEecccCCHHH
Confidence            5899999999887542111   23334443224789999999999986544332 2223332334577899999999999


Q ss_pred             HHHHHHHH
Q 018454          290 LLSVLRQF  297 (355)
Q Consensus       290 Ll~~L~q~  297 (355)
                      |++.|...
T Consensus       159 l~~~l~~~  166 (168)
T cd01897         159 VKNKACEL  166 (168)
T ss_pred             HHHHHHHH
Confidence            99988654

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.53  E-value=1e-07  Score=87.07  Aligned_cols=37  Identities=30%  Similarity=0.333  Sum_probs=34.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVW  341 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT  341 (355)
                      ....|+|+|.+|||||||||+|.+.+ .+.||..||.|
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrT   60 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRT   60 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCcc
Confidence            56789999999999999999999955 69999999999

>PRK09866 hypothetical protein; Provisional

Probab=98.50  E-value=9e-07  Score=93.14  Aligned_cols=97  Identities=15%  Similarity=0.106  Sum_probs=70.2

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh-----hhHHHHHHH-Hhh-hC-C
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA-----WATKGWLRV-LSK-EY-P  273 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~-----~~~~~w~~~-l~~-~~-p  273 (355)
                      +-+.+.+.+..+|+||+|+|+..+.+..+..+.+.+.+...+.|+++|+||+|+...     .....++.. +.. .. +
T Consensus       248 L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f  327 (741)
T PRK09866        248 LQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITP  327 (741)
T ss_pred             HHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCC
Confidence            333444579999999999999988777777888888763222599999999999752     223333332 221 22 3


Q ss_pred             ceEEEeeecCCCChHHHHHHHHHHH
Q 018454          274 SLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      ..+|++||++|.|++.|++.|.+.-
T Consensus       328 ~eIfPVSAlkG~nid~LLdeI~~~~  352 (741)
T PRK09866        328 QQIFPVSSMWGYLANRARHELANNG  352 (741)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHhCC
Confidence            5688999999999999999988743

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.50  E-value=7e-07  Score=88.69  Aligned_cols=92  Identities=23%  Similarity=0.322  Sum_probs=63.6

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEE
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFH  278 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~  278 (355)
                      ..++.+.+.+..+|+||+|+|+.+|..... ..+..++... ..++|+|+|+||+|+.+......    +...+ ..++.
T Consensus       257 e~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~~~-~~~i~  331 (351)
T TIGR03156       257 AAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEEGY-PEAVF  331 (351)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHhCC-CCEEE
Confidence            445667778899999999999998864322 2223444432 23789999999999986533221    11112 23578


Q ss_pred             eeecCCCChHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      +||+++.|+++|++.|.+.
T Consensus       332 iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       332 VSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             EEccCCCCHHHHHHHHHhh
Confidence            8999999999999988653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.49  E-value=2.8e-07  Score=94.16  Aligned_cols=48  Identities=23%  Similarity=0.205  Sum_probs=41.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      +.+++|.++|.||||||||+|+|.+.....++++||||++.+..-+.+
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~  248 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL  248 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE
Confidence            467899999999999999999999998889999999998876555444

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.49  E-value=4.5e-07  Score=91.80  Aligned_cols=112  Identities=24%  Similarity=0.203  Sum_probs=78.7

Q ss_pred             CcchhhhhhhhccccchHH----HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454          182 GDGFRDLVRHTMFEKGQSK----RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       182 ~~~~~~~~~~~~f~~~~s~----ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp  257 (355)
                      .+|++-.+-++...+.+.-    -=+++.++.+++||+||+|+|+..|....+..+...+.   .++|+++|+||+||.+
T Consensus       262 i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~---~~~~~i~v~NK~DL~~  338 (454)
T COG0486         262 LNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLP---KKKPIIVVLNKADLVS  338 (454)
T ss_pred             ECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcc---cCCCEEEEEechhccc
Confidence            3455444445555543221    12478899999999999999999987666666655232   5799999999999998


Q ss_pred             hhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          258 AWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       258 ~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      .......  .+.  .....+.+|++++.|++.|.+.|.++...
T Consensus       339 ~~~~~~~--~~~--~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~  377 (454)
T COG0486         339 KIELESE--KLA--NGDAIISISAKTGEGLDALREAIKQLFGK  377 (454)
T ss_pred             ccccchh--hcc--CCCceEEEEecCccCHHHHHHHHHHHHhh
Confidence            7643322  111  12235678999999999999999988753

>cd01878 HflX HflX subfamily

Probab=98.48  E-value=1.3e-06  Score=78.93  Aligned_cols=91  Identities=26%  Similarity=0.344  Sum_probs=63.1

Q ss_pred             HHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEee
Q 018454          203 WGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       203 ~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vS  280 (355)
                      +......+..+|++++|+|+.++..... ..+.+++.. ...++|+++|+||+|+.+.....   ..+. .....++.+|
T Consensus       111 ~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~-~~~~~~~~~S  186 (204)
T cd01878         111 FRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLE-AGRPDAVFIS  186 (204)
T ss_pred             HHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhh-cCCCceEEEE
Confidence            3444455778999999999998865432 233444443 12468999999999998765433   2222 2334577899


Q ss_pred             ecCCCChHHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQF  297 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~  297 (355)
                      ++++.|++++++.|.+.
T Consensus       187 a~~~~gi~~l~~~L~~~  203 (204)
T cd01878         187 AKTGEGLDELLEAIEEL  203 (204)
T ss_pred             cCCCCCHHHHHHHHHhh
Confidence            99999999999988653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.47  E-value=9.2e-07  Score=74.96  Aligned_cols=86  Identities=24%  Similarity=0.227  Sum_probs=63.4

Q ss_pred             HHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454          203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       203 ~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      +...+..+..+|++++|+|+.++....+..+...    ..++|+++|+||+|+.+....      .........+.+|++
T Consensus        71 ~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~------~~~~~~~~~~~~Sa~  140 (157)
T cd04164          71 IERAREAIEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL------LSLLAGKPIIAISAK  140 (157)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc------ccccCCCceEEEECC
Confidence            4456667789999999999998776555444332    257999999999999875533      112222446788999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      ++.|+++|++.|.+.+
T Consensus       141 ~~~~v~~l~~~l~~~~  156 (157)
T cd04164         141 TGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            9999999999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.46  E-value=1.3e-06  Score=90.35  Aligned_cols=99  Identities=20%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCc-----chHHHHHHHh------------hcCCCcEEEEEeccCCCChhhHHH
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTR-----CHHLERHLKE------------HCKHKHMILLLNKCDLVPAWATKG  263 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~-----~~~l~~~L~~------------~~~~k~vILVlNK~DLvp~~~~~~  263 (355)
                      .+..+.++.++++|+||+|+|+.+....+     ...+...|..            ...++|.|+|+||+||........
T Consensus       225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e  304 (500)
T PRK12296        225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE  304 (500)
T ss_pred             HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH
Confidence            34456677889999999999997532111     1122222221            114689999999999975443333


Q ss_pred             HH-HHHhhhCCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          264 WL-RVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       264 w~-~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      +. ..+.. ....+|.+||.++.|+++|+..|.+.+..
T Consensus       305 ~l~~~l~~-~g~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        305 FVRPELEA-RGWPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             HHHHHHHH-cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            32 23332 34567889999999999999999887754

>cd00880 Era_like Era (E

Probab=98.46  E-value=1.5e-06  Score=72.43  Aligned_cols=92  Identities=22%  Similarity=0.218  Sum_probs=65.7

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHH---HHhhh-CCceEEEe
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLR---VLSKE-YPSLAFHA  279 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~---~l~~~-~p~~~f~v  279 (355)
                      ..+...+..+|++++|+|+.++.......+.....  ..+.|+++|+||+|+++......+..   ..... ....++.+
T Consensus        67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (163)
T cd00880          67 ELARRVLERADLILFVVDADLRADEEEEKLLELLR--ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAV  144 (163)
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEE
Confidence            45556778899999999999887655444233332  25899999999999998765555532   12122 23456778


Q ss_pred             eecCCCChHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~  297 (355)
                      |+.++.|++++++.|.+.
T Consensus       145 sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         145 SALTGEGIDELREALIEA  162 (163)
T ss_pred             eeeccCCHHHHHHHHHhh
Confidence            999999999999988754

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.45  E-value=2.4e-06  Score=92.26  Aligned_cols=125  Identities=14%  Similarity=0.211  Sum_probs=82.1

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEeeec
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHASIN  282 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~vSa~  282 (355)
                      ...+..+|++|+|+|+.++....+..+...+..  .++|+|+|+||+||++..........+...+    ...++.+||+
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk  604 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKVMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK  604 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence            456789999999999998876655555555543  5799999999999987543333333333221    2345778999


Q ss_pred             CCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC---Cee-EEEEEE
Q 018454          283 KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS---VVW-YWFYCQ  347 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP---GtT-~~~y~~  347 (355)
                      +|.|+++|++.+.+.......+  +           .++.+|..+...... .|-|   |.. +-.|+|
T Consensus       605 tg~gv~~L~~~i~~~~~~~~~~--i-----------~T~~Ln~~l~~~~~~-~~~p~~~g~~~ki~y~~  659 (712)
T PRK09518        605 TGWHTNRLAPAMQEALESWDQR--I-----------PTGKLNAFLGKIQAE-HPHPLRGGKQPRILFAT  659 (712)
T ss_pred             CCCCHHHHHHHHHHHHHHhccc--C-----------ChHHHHHHHHHHHhh-CCCCccCCeeeeEEEEE
Confidence            9999999999998877532211  1           144667777543322 2222   444 677765

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.43  E-value=7e-07  Score=77.58  Aligned_cols=94  Identities=23%  Similarity=0.198  Sum_probs=61.8

Q ss_pred             HHHHHhhhcCCCEEEEEecCCCCC-----CCcc--hHHHHHHHhh--------cCCCcEEEEEeccCCCChhhHHHHHH-
Q 018454          203 WGELYKVIDSSDVVVQVLDARDPQ-----GTRC--HHLERHLKEH--------CKHKHMILLLNKCDLVPAWATKGWLR-  266 (355)
Q Consensus       203 ~~el~kvi~~sDvVL~VvDardp~-----~s~~--~~l~~~L~~~--------~~~k~vILVlNK~DLvp~~~~~~w~~-  266 (355)
                      +.+.+..+..+|+|++|+|+.++.     ....  ..+...+...        ..++|+++|+||+|+........|.. 
T Consensus        65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~  144 (176)
T cd01881          65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVR  144 (176)
T ss_pred             cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHH
Confidence            345556678899999999999874     1111  1122222211        13689999999999987665555521 


Q ss_pred             HHhhhCCceEEEeeecCCCChHHHHHHHHH
Q 018454          267 VLSKEYPSLAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       267 ~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      .........++.+|++++.|+++|++.|..
T Consensus       145 ~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~  174 (176)
T cd01881         145 ELALEEGAEVVPISAKTEEGLDELIRAIYE  174 (176)
T ss_pred             HHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence            111223345778899999999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.41  E-value=4.5e-07  Score=92.81  Aligned_cols=48  Identities=23%  Similarity=0.239  Sum_probs=40.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      +.+++|+++|+||||||||+|+|.+.....++++||+|++.+..-+.+
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~  260 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL  260 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE
Confidence            356899999999999999999999998888999999997766544433

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.41  E-value=8.3e-07  Score=76.32  Aligned_cols=89  Identities=24%  Similarity=0.224  Sum_probs=56.1

Q ss_pred             hhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh-----hhCCceEEEe
Q 018454          208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS-----KEYPSLAFHA  279 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~-----~~~p~~~f~v  279 (355)
                      ..+..+|++|+|+|+.++...  ....+...+.. ...+.|+++|+||+|+............+.     ......++.+
T Consensus        63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  142 (160)
T cd04156          63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPC  142 (160)
T ss_pred             HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEec
Confidence            357889999999999987521  11122222221 124789999999999854322222222221     1112346778


Q ss_pred             eecCCCChHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q  296 (355)
                      ||+++.|++++++.|.+
T Consensus       143 Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         143 SAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             ccccCCChHHHHHHHhc
Confidence            99999999999998753

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04157 Arl6 Arl6 subfamily

Probab=98.41  E-value=1.3e-06  Score=74.97  Aligned_cols=88  Identities=18%  Similarity=0.181  Sum_probs=57.5

Q ss_pred             hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh---hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFH  278 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~  278 (355)
                      ..+..+|.+|+|+|+.++....  ...+..++..   ...+.|+++|+||+|+.+......+...+..    ..+..+|.
T Consensus        64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  143 (162)
T cd04157          64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFA  143 (162)
T ss_pred             HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEE
Confidence            3568899999999999875321  1122222221   0146899999999999764333333333321    12345678


Q ss_pred             eeecCCCChHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLR  295 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~  295 (355)
                      +||+++.|++++++.|.
T Consensus       144 ~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157         144 SNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             eeCCCCCchHHHHHHHh
Confidence            99999999999999875

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01893 Miro1 Miro1 subfamily

Probab=98.40  E-value=1.4e-06  Score=76.06  Aligned_cols=92  Identities=13%  Similarity=0.118  Sum_probs=61.4

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhH---HHHHHHHhhhCC--ceEEEe
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWAT---KGWLRVLSKEYP--SLAFHA  279 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~---~~w~~~l~~~~p--~~~f~v  279 (355)
                      ...+..+|++++|+|+.++.....  ..+...+.....+.|+++|+||+||.+....   +.....+...+.  ...+.+
T Consensus        65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  144 (166)
T cd01893          65 AAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVEC  144 (166)
T ss_pred             hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEe
Confidence            345688999999999988764322  1233344433357899999999999865431   222222222222  246788


Q ss_pred             eecCCCChHHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~  298 (355)
                      ||+++.|++++++.+.+.+
T Consensus       145 Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         145 SAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             ccccccCHHHHHHHHHHHh
Confidence            9999999999999887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01862 Rab7 Rab7 subfamily

Probab=98.39  E-value=2.3e-06  Score=74.17  Aligned_cols=92  Identities=14%  Similarity=0.131  Sum_probs=59.3

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-----cCCCcEEEEEeccCCCC-hhhHHHHHHHHhhhC-CceEEE
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-----CKHKHMILLLNKCDLVP-AWATKGWLRVLSKEY-PSLAFH  278 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-----~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~~~-p~~~f~  278 (355)
                      ...+..+|.+|+|+|+.++..... ..+...+...     ..++|+++|+||+|+.+ ......-...+.+.. ...+|.
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  146 (172)
T cd01862          67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFE  146 (172)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEE
Confidence            346788999999999988753211 1122222211     12789999999999983 221111222222233 356788


Q ss_pred             eeecCCCChHHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      +|+.+|.|++++++.|.+.+
T Consensus       147 ~Sa~~~~gv~~l~~~i~~~~  166 (172)
T cd01862         147 TSAKEAINVEQAFETIARKA  166 (172)
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            99999999999999887654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01861 Rab6 Rab6 subfamily

Probab=98.38  E-value=1.7e-06  Score=74.29  Aligned_cols=91  Identities=18%  Similarity=0.168  Sum_probs=62.8

Q ss_pred             HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcCCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceEEEe
Q 018454          205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      .+...+..+|++|+|+|+.++...  ..+..++.   . ...+.|+++|+||+|+... .........+........+.+
T Consensus        65 ~~~~~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (161)
T cd01861          65 LIPSYIRDSSVAVVVYDITNRQSF--DNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIET  142 (161)
T ss_pred             HHHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEE
Confidence            344567899999999999876432  22333332   2 2125899999999999533 233344444544455667889


Q ss_pred             eecCCCChHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~  297 (355)
                      |++++.|+++|++.|.+.
T Consensus       143 Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         143 SAKAGHNVKELFRKIASA  160 (161)
T ss_pred             eCCCCCCHHHHHHHHHHh
Confidence            999999999999998754

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.38  E-value=1.9e-06  Score=86.74  Aligned_cols=99  Identities=16%  Similarity=0.193  Sum_probs=67.2

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCC----CcchHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQG----TRCHHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-  273 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~----s~~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-  273 (355)
                      +..+..+.++.+|+||+|+|+.....    .....+.+.+...   ..++|.|+|+||+|+............+.+..+ 
T Consensus       227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~  306 (390)
T PRK12298        227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGW  306 (390)
T ss_pred             HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCC
Confidence            44555678999999999999873211    1112333333321   136899999999999876544444444444332 


Q ss_pred             -ceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          274 -SLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       274 -~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                       ..++.+||+++.|+++|++.|.++++.
T Consensus       307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        307 EGPVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence             246788999999999999999888764

>cd04124 RabL2 RabL2 subfamily

Probab=98.38  E-value=2.5e-06  Score=74.20  Aligned_cols=89  Identities=16%  Similarity=0.126  Sum_probs=60.3

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFG  286 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~G  286 (355)
                      ..+..+|++|+|+|+.++..... ..+...+.....+.|+++|+||+||.+.. ...... +...+....+.+|++++.|
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~-~~~~~~~~~~~~Sa~~~~g  145 (161)
T cd04124          68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFN-FAEKHNLPLYYVSAADGTN  145 (161)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHH-HHHHcCCeEEEEeCCCCCC
Confidence            46789999999999987754221 22333333333579999999999996432 222222 2223345567889999999


Q ss_pred             hHHHHHHHHHHH
Q 018454          287 KGSLLSVLRQFA  298 (355)
Q Consensus       287 i~~Ll~~L~q~~  298 (355)
                      ++++++.|.+..
T Consensus       146 v~~l~~~l~~~~  157 (161)
T cd04124         146 VVKLFQDAIKLA  157 (161)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.36  E-value=2.9e-07  Score=92.67  Aligned_cols=44  Identities=20%  Similarity=0.221  Sum_probs=36.7

Q ss_pred             eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      ..|+|||+||||||||||+|.+.+ ..++++|+||+.-...++.+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~  203 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRV  203 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEe
Confidence            468999999999999999999876 58999999996655555543

>cd04151 Arl1 Arl1 subfamily

Probab=98.36  E-value=1.7e-06  Score=74.69  Aligned_cols=88  Identities=20%  Similarity=0.168  Sum_probs=56.9

Q ss_pred             hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~vS  280 (355)
                      ..+..+|++|+|+|+.++....  ...+...+.. ...++|+++|+||+|+.......+....+....    ...+|.+|
T Consensus        62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  141 (158)
T cd04151          62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTS  141 (158)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEee
Confidence            4578899999999998763211  1222222221 124789999999999975432233333332111    12478899


Q ss_pred             ecCCCChHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLR  295 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~  295 (355)
                      ++++.|+++|++.|.
T Consensus       142 a~~~~gi~~l~~~l~  156 (158)
T cd04151         142 AIKGEGLDEGMDWLV  156 (158)
T ss_pred             ccCCCCHHHHHHHHh
Confidence            999999999998875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.34  E-value=5.8e-07  Score=79.52  Aligned_cols=81  Identities=21%  Similarity=0.171  Sum_probs=60.6

Q ss_pred             hcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHH
Q 018454          210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGS  289 (355)
Q Consensus       210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~  289 (355)
                      .+..|+||+|+||...  .++..+...+.+  .++|+|+|+||+|++......--.+.+++...+.++.+||.++.|+++
T Consensus        76 ~~~~D~ii~VvDa~~l--~r~l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   76 SEKPDLIIVVVDATNL--ERNLYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             HTSSSEEEEEEEGGGH--HHHHHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             hcCCCEEEEECCCCCH--HHHHHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            5789999999999874  344455555554  589999999999998765443334555555566688889999999999


Q ss_pred             HHHHH
Q 018454          290 LLSVL  294 (355)
Q Consensus       290 Ll~~L  294 (355)
                      |.+.+
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.33  E-value=1.8e-06  Score=74.75  Aligned_cols=87  Identities=18%  Similarity=0.187  Sum_probs=56.9

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh------CCce
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE------YPSL  275 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~------~p~~  275 (355)
                      ...+..+|++|+|+|+.++.. . ..+..++..     ...+.|+++|+||+|+.+..........+...      ....
T Consensus        68 ~~~~~~~~~~v~vvd~~~~~~-~-~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (167)
T cd04160          68 DKYYAECHAIIYVIDSTDRER-F-EESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCL  145 (167)
T ss_pred             HHHhCCCCEEEEEEECchHHH-H-HHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceE
Confidence            346789999999999987642 1 122222221     12478999999999986643222222222221      2345


Q ss_pred             EEEeeecCCCChHHHHHHHH
Q 018454          276 AFHASINKSFGKGSLLSVLR  295 (355)
Q Consensus       276 ~f~vSa~~~~Gi~~Ll~~L~  295 (355)
                      ++.+||+++.|++++++.|.
T Consensus       146 ~~~~Sa~~g~gv~e~~~~l~  165 (167)
T cd04160         146 VLPVSALEGTGVREGIEWLV  165 (167)
T ss_pred             EEEeeCCCCcCHHHHHHHHh
Confidence            78899999999999998874

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.33  E-value=5.9e-06  Score=73.64  Aligned_cols=91  Identities=20%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHH----HHHhhhCCceEEEeee
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWL----RVLSKEYPSLAFHASI  281 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~----~~l~~~~p~~~f~vSa  281 (355)
                      .+...+.++++++|+|+.++.......+.+++..  .+.|+++|+||+|+++........    ..+... ...++.+|+
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~~Sa  176 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DDEVILFSS  176 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CCceEEEEc
Confidence            3345566789999999988766554455666654  478999999999998764433322    222221 345678899


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +++.|++++++.|.+++.
T Consensus       177 ~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        177 LKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             CCCCCHHHHHHHHHHHhc
Confidence            999999999999988764

>cd04149 Arf6 Arf6 subfamily

Probab=98.32  E-value=2e-06  Score=75.83  Aligned_cols=86  Identities=15%  Similarity=0.144  Sum_probs=55.9

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHh----hhCCceEEE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLS----KEYPSLAFH  278 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~----~~~p~~~f~  278 (355)
                      ..+..+|++|+|+|+.++...  ..+..++..     ...+.|++||+||+||......++..+.+.    ...+...+.
T Consensus        72 ~~~~~a~~ii~v~D~t~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  149 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDRI--DEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP  149 (168)
T ss_pred             HHhccCCEEEEEEeCCchhhH--HHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEE
Confidence            357889999999999987432  222333222     124689999999999864221222222221    112345678


Q ss_pred             eeecCCCChHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLR  295 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~  295 (355)
                      +||++|.|++++++.|.
T Consensus       150 ~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         150 SCATSGDGLYEGLTWLS  166 (168)
T ss_pred             eeCCCCCChHHHHHHHh
Confidence            99999999999998875

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.32  E-value=2.5e-06  Score=75.57  Aligned_cols=91  Identities=18%  Similarity=0.129  Sum_probs=57.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~vS  280 (355)
                      ..+..+|++|+|+|+.++....  ...+...+.. ...+.|++||+||+||.......+....+.-    ..+...+.+|
T Consensus        76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  155 (175)
T smart00177       76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTC  155 (175)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEee
Confidence            3578999999999998874211  1122222222 1246899999999999643222222222211    1233456789


Q ss_pred             ecCCCChHHHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~  298 (355)
                      |++|.|+.++++.|.+.+
T Consensus       156 a~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      156 ATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.32  E-value=2.7e-06  Score=73.41  Aligned_cols=89  Identities=19%  Similarity=0.194  Sum_probs=59.7

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ...+..+|++|+|+|+.++...  ..+..++.   ....+.|+|+|+||+|+.+... .......+...+....+.+|+.
T Consensus        70 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  147 (164)
T cd04101          70 SNYWESPSVFILVYDVSNKASF--ENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSAL  147 (164)
T ss_pred             HHHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCC
Confidence            3467899999999999876422  22333333   2224689999999999976432 1212223333334456789999


Q ss_pred             CCCChHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQF  297 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~  297 (355)
                      ++.|++++++.|.+.
T Consensus       148 ~~~gi~~l~~~l~~~  162 (164)
T cd04101         148 RGVGYEEPFESLARA  162 (164)
T ss_pred             CCCChHHHHHHHHHH
Confidence            999999999988654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PRK04213 GTP-binding protein; Provisional

Probab=98.32  E-value=5.6e-06  Score=74.51  Aligned_cols=88  Identities=19%  Similarity=0.100  Sum_probs=58.3

Q ss_pred             hhcCCCEEEEEecCCCCCCC-----------cchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHhhhCC--
Q 018454          209 VIDSSDVVVQVLDARDPQGT-----------RCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEYP--  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s-----------~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~~p--  273 (355)
                      .++.+|+|++|+|+.+....           .+..+...+..  .++|+++|+||+|+.+..  ....+.+.+....+  
T Consensus        87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  164 (201)
T PRK04213         87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWR  164 (201)
T ss_pred             hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccc
Confidence            56778999999998653211           11233444433  579999999999997643  23344444332101  


Q ss_pred             ---ceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          274 ---SLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       274 ---~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                         ..++.+||++| |+++|++.|.+...
T Consensus       165 ~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        165 QWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             ccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence               13678999999 99999999987654

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.31  E-value=2.1e-06  Score=76.74  Aligned_cols=89  Identities=21%  Similarity=0.198  Sum_probs=58.2

Q ss_pred             hhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh-----------hCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK-----------EYP  273 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~-----------~~p  273 (355)
                      ..+..+|.+|+|+|+.++...  ....+.+.+.. ...+.|+++|+||+|+......++..+.+.-           ..+
T Consensus        80 ~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~  159 (184)
T smart00178       80 DYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRP  159 (184)
T ss_pred             HHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCce
Confidence            356899999999999987421  11123333321 1257899999999998532222223333311           124


Q ss_pred             ceEEEeeecCCCChHHHHHHHHH
Q 018454          274 SLAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      ..+|.+|++++.|+++++++|.+
T Consensus       160 ~~i~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      160 LEVFMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             eEEEEeecccCCChHHHHHHHHh
Confidence            56889999999999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00154 Rab Rab family

Probab=98.31  E-value=3.8e-06  Score=70.71  Aligned_cols=89  Identities=21%  Similarity=0.196  Sum_probs=60.0

Q ss_pred             HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hhhc-CCCcEEEEEeccCCC-ChhhHHHHHHHHhhhCCceEEEe
Q 018454          205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHC-KHKHMILLLNKCDLV-PAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~~-~~k~vILVlNK~DLv-p~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      .....+.++|++|+|+|+.++..  ...+..++   .... .+.|+++|+||+|+. +......-...+.......++.+
T Consensus        65 ~~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (159)
T cd00154          65 ITPSYYRGAHGAILVYDITNRES--FENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFET  142 (159)
T ss_pred             HHHHHhcCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEE
Confidence            44556788999999999988542  12233333   2211 468999999999997 43322222333333455668889


Q ss_pred             eecCCCChHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLR  295 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~  295 (355)
                      |+.++.|++++++.|.
T Consensus       143 sa~~~~~i~~~~~~i~  158 (159)
T cd00154         143 SAKTGENVEELFQSLA  158 (159)
T ss_pred             ecCCCCCHHHHHHHHh
Confidence            9999999999998874

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.31  E-value=2.9e-06  Score=73.98  Aligned_cols=88  Identities=18%  Similarity=0.153  Sum_probs=55.1

Q ss_pred             hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~vS  280 (355)
                      ..+..+|++|+|+|+.++....  ...+...+.. ...+.|++||+||+||.......+....+..    ..+..++.+|
T Consensus        63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  142 (159)
T cd04150          63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATC  142 (159)
T ss_pred             HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEee
Confidence            4678999999999998764211  1112222221 1236899999999999643222222222211    1123456789


Q ss_pred             ecCCCChHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLR  295 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~  295 (355)
                      |++|.|++++++.|.
T Consensus       143 ak~g~gv~~~~~~l~  157 (159)
T cd04150         143 ATSGDGLYEGLDWLS  157 (159)
T ss_pred             CCCCCCHHHHHHHHh
Confidence            999999999998875

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.30  E-value=5.2e-06  Score=71.25  Aligned_cols=93  Identities=16%  Similarity=0.091  Sum_probs=62.2

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEE
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFH  278 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~  278 (355)
                      ......+..+|++|+|+|+.++...  ..+..++..   . ..+.|+++|+||+|+.+... ...-...+...+...++.
T Consensus        64 ~~~~~~~~~~d~~ilv~d~~~~~s~--~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e  141 (164)
T smart00175       64 SITSSYYRGAVGALLVYDITNRESF--ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFE  141 (164)
T ss_pred             HHHHHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEE
Confidence            3445567889999999999886543  233333322   1 14689999999999976321 111122233334455788


Q ss_pred             eeecCCCChHHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      +|+.++.|++++++.|.+.+
T Consensus       142 ~Sa~~~~~i~~l~~~i~~~~  161 (164)
T smart00175      142 TSAKTNTNVEEAFEELAREI  161 (164)
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999887654

Rab GTPases are implicated in vesicle trafficking.

>cd04154 Arl2 Arl2 subfamily

Probab=98.29  E-value=2.8e-06  Score=74.70  Aligned_cols=88  Identities=20%  Similarity=0.141  Sum_probs=57.4

Q ss_pred             hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~vS  280 (355)
                      ..+..+|++|+|+|+.++....  ...+..++.. ...+.|+++|+||+|+..........+.+..    .....+|.+|
T Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (173)
T cd04154          77 NYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCS  156 (173)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEecc
Confidence            4578999999999998863211  1122232221 2257899999999999754322333333321    1234578889


Q ss_pred             ecCCCChHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLR  295 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~  295 (355)
                      |++|.|++++++.|.
T Consensus       157 a~~g~gi~~l~~~l~  171 (173)
T cd04154         157 AVTGEGLLQGIDWLV  171 (173)
T ss_pred             CCCCcCHHHHHHHHh
Confidence            999999999998874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04112 Rab26 Rab26 subfamily

Probab=98.28  E-value=5.4e-06  Score=74.41  Aligned_cols=95  Identities=14%  Similarity=0.110  Sum_probs=63.4

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhhc-CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEHC-KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~~-~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ....+..+|++|+|+|+.++.... ...+...+.... .+.|+++|+||+||.... ........+...+....+.+|++
T Consensus        67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~  146 (191)
T cd04112          67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAK  146 (191)
T ss_pred             hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCC
Confidence            344678899999999998764221 112223333322 367999999999997432 22233344444455567889999


Q ss_pred             CCCChHHHHHHHHHHHhh
Q 018454          283 KSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ++.|+++|++.|.+.+..
T Consensus       147 ~~~~v~~l~~~l~~~~~~  164 (191)
T cd04112         147 TGLNVELAFTAVAKELKH  164 (191)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999877653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.28  E-value=9.4e-06  Score=70.05  Aligned_cols=88  Identities=23%  Similarity=0.138  Sum_probs=58.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh--HHHHHHHHhh----h--CCceEEEee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA--TKGWLRVLSK----E--YPSLAFHAS  280 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~----~--~p~~~f~vS  280 (355)
                      .+..+|++|+|+|+.++...........+..  .++|+++|+||+|+.....  .......+..    .  .+..++.+|
T Consensus        70 ~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (168)
T cd01887          70 GASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTS  147 (168)
T ss_pred             HHhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEee
Confidence            4578999999999987653333333344443  5789999999999975321  1111111111    0  124578899


Q ss_pred             ecCCCChHHHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~  298 (355)
                      +.++.|+++|++.|.++.
T Consensus       148 a~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         148 AKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             cccCCCHHHHHHHHHHhh
Confidence            999999999999998765

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04114 Rab30 Rab30 subfamily

Probab=98.27  E-value=6e-06  Score=71.59  Aligned_cols=94  Identities=16%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEee
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vS  280 (355)
                      ......+..+|++|+|+|+.++.... ...+...+... ..+.|+++|+||+|+.+.. ........+........+.+|
T Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~S  150 (169)
T cd04114          71 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETS  150 (169)
T ss_pred             HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEee
Confidence            33355788999999999998764321 12222223321 1357889999999997532 223344555555556678899


Q ss_pred             ecCCCChHHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQF  297 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~  297 (355)
                      ++++.|+.++++.|.+.
T Consensus       151 a~~~~gv~~l~~~i~~~  167 (169)
T cd04114         151 AKESDNVEKLFLDLACR  167 (169)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999988754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.26  E-value=1.6e-06  Score=86.09  Aligned_cols=45  Identities=24%  Similarity=0.242  Sum_probs=36.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF  350 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~  350 (355)
                      ....|++||+||||||||||+|.+.. ..+++.||+|.+....-+.
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~  232 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLD  232 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEE
Confidence            44889999999999999999999987 6678889988665544443

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.26  E-value=7.7e-06  Score=84.06  Aligned_cols=102  Identities=17%  Similarity=0.211  Sum_probs=67.6

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCC-CCCc-chHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH----HHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDP-QGTR-CHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG----WLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp-~~s~-~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~----w~~~l~  269 (355)
                      +|| .++.+.+...+..+|++|+|+||.++ .... .+++ ..+. ...-+++|+|+||+|+++.....+    ..+.+.
T Consensus       125 PGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~-~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~  201 (460)
T PTZ00327        125 PGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVE-IMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVK  201 (460)
T ss_pred             CCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHH-HcCCCcEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence            565 45677888888999999999999974 2221 1222 1221 112356899999999986443222    222222


Q ss_pred             hh--CCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          270 KE--YPSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       270 ~~--~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ..  ....+|.+|+.+|.|++.|++.|.+.++.
T Consensus       202 ~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        202 GTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             hhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            21  12457889999999999999999876653

>cd04109 Rab28 Rab28 subfamily

Probab=98.26  E-value=4.1e-06  Score=76.87  Aligned_cols=91  Identities=14%  Similarity=0.034  Sum_probs=59.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc----CCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC----KHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~----~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|+||+|+|+.++..... ..+...+....    .+.|+|+|+||+||... .........+...+....+.+||+
T Consensus        70 ~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAk  149 (215)
T cd04109          70 YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAK  149 (215)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECC
Confidence            4678999999999998753221 12223333211    23468999999999742 222223334444445556789999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      +|.|+++|++.|.+.+.
T Consensus       150 tg~gv~~lf~~l~~~l~  166 (215)
T cd04109         150 TGDRVNLLFQQLAAELL  166 (215)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999998876653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.26  E-value=6.5e-06  Score=75.13  Aligned_cols=89  Identities=17%  Similarity=0.129  Sum_probs=59.8

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhH-HH----HHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWAT-KG----WLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~-~~----w~~~l~  269 (355)
                      +|+ ..+...+...+..+|++|+|+|+..........+..++..  .++| +|+|+||+|++..... +.    ....+.
T Consensus        73 PG~-~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~  149 (195)
T cd01884          73 PGH-ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLS  149 (195)
T ss_pred             cCH-HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence            344 3567778888999999999999988766555556666654  4566 7899999999853322 21    222232


Q ss_pred             hh-C---CceEEEeeecCCCCh
Q 018454          270 KE-Y---PSLAFHASINKSFGK  287 (355)
Q Consensus       270 ~~-~---p~~~f~vSa~~~~Gi  287 (355)
                      .. +   ...++++|+.+|.++
T Consensus       150 ~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         150 KYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HhcccccCCeEEEeeCccccCC
Confidence            22 1   145678899998874

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.26  E-value=7e-06  Score=87.22  Aligned_cols=102  Identities=16%  Similarity=0.117  Sum_probs=70.0

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhHH----HHHHHHhh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWATK----GWLRVLSK  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~~----~w~~~l~~  270 (355)
                      +|| .++.......+..+|++++|+|+.++......+...++..  .+.+ +|+|+||+|+++.....    .+.+.+..
T Consensus        59 PGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~  135 (614)
T PRK10512         59 PGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLRE  135 (614)
T ss_pred             CCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence            455 3455666777899999999999998765544444444443  3455 57999999998754322    23333322


Q ss_pred             hC--CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          271 EY--PSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       271 ~~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ..  ...+|.+|+.+|.|+++|++.|.++...
T Consensus       136 ~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        136 YGFAEAKLFVTAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             cCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence            21  2457889999999999999999877653

>PTZ00099 rab6; Provisional

Probab=98.26  E-value=5.4e-06  Score=74.26  Aligned_cols=92  Identities=16%  Similarity=0.099  Sum_probs=59.9

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-h-HHHHHHHHhhhCCceEEEeeecC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-A-TKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~-~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      ..+..+|++|+|+|+.++..... ..+...+.. ...+.|+|||+||+||.... . .... ..+...+....+.+||++
T Consensus        48 ~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~-~~~~~~~~~~~~e~SAk~  126 (176)
T PTZ00099         48 SYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEG-MQKAQEYNTMFHETSAKA  126 (176)
T ss_pred             HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHH-HHHHHHcCCEEEEEECCC
Confidence            35689999999999988643211 122222222 22467889999999996421 1 1111 122223445567899999


Q ss_pred             CCChHHHHHHHHHHHhh
Q 018454          284 SFGKGSLLSVLRQFARL  300 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~~  300 (355)
                      |.|+.++++.|.+.++.
T Consensus       127 g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        127 GHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999887764

>cd04158 ARD1 ARD1 subfamily

Probab=98.26  E-value=3.2e-06  Score=74.25  Aligned_cols=92  Identities=18%  Similarity=0.156  Sum_probs=57.3

Q ss_pred             hhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh--hh---CCceEEEe
Q 018454          208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS--KE---YPSLAFHA  279 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~--~~---~p~~~f~v  279 (355)
                      ..+..+|.+|+|+|+.++...  ....+..++.. ...+.|+++|+||+||............+.  ..   .+..++.+
T Consensus        62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (169)
T cd04158          62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGC  141 (169)
T ss_pred             HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeC
Confidence            456889999999999886421  11222222221 123579999999999964322222222221  11   12245678


Q ss_pred             eecCCCChHHHHHHHHHHHh
Q 018454          280 SINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ||+++.|+++++++|.+.+.
T Consensus       142 Sa~~g~gv~~~f~~l~~~~~  161 (169)
T cd04158         142 DARSGMGLYEGLDWLSRQLV  161 (169)
T ss_pred             cCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999876543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.25  E-value=3.9e-06  Score=73.66  Aligned_cols=89  Identities=11%  Similarity=0.082  Sum_probs=59.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK  287 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi  287 (355)
                      .+..+|++|+|+|+.++..... ..+.+.+.....+.|+++|+||+||....... ....+........|.+||+++.|+
T Consensus        69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v  147 (166)
T cd00877          69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKA-KQITFHRKKNLQYYEISAKSNYNF  147 (166)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCH-HHHHHHHHcCCEEEEEeCCCCCCh
Confidence            4568999999999988753211 12223333333479999999999997433211 122233334556788999999999


Q ss_pred             HHHHHHHHHHH
Q 018454          288 GSLLSVLRQFA  298 (355)
Q Consensus       288 ~~Ll~~L~q~~  298 (355)
                      +++++.|.+.+
T Consensus       148 ~~~f~~l~~~~  158 (166)
T cd00877         148 EKPFLWLARKL  158 (166)
T ss_pred             HHHHHHHHHHH
Confidence            99999987554

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.25  E-value=9.1e-06  Score=82.14  Aligned_cols=102  Identities=16%  Similarity=0.160  Sum_probs=66.4

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHH----HHHHHHhh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK----GWLRVLSK  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~----~w~~~l~~  270 (355)
                      +|| .++.......+..+|++|+|+|+.++. ..........+.. ...+++|+|+||+|+++.....    +..+.+..
T Consensus        88 PGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~  165 (406)
T TIGR03680        88 PGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKG  165 (406)
T ss_pred             CCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhh
Confidence            455 345566677788899999999999864 2222222223322 2346789999999998753221    11222221


Q ss_pred             hC--CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          271 EY--PSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       271 ~~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ..  ...++.+|+.++.|+++|++.|.+.++
T Consensus       166 ~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       166 TVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            11  345788999999999999999988654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.25  E-value=1.7e-06  Score=84.22  Aligned_cols=48  Identities=25%  Similarity=0.180  Sum_probs=42.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeecc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG  353 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~~  353 (355)
                      ..-+|.++||||||||||+++|.+.+ ..++|+|=||+..+++.+.|=+
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~  214 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGY  214 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCC
Confidence            45678899999999999999999766 8999999999999999988644

>PRK15494 era GTPase Era; Provisional

Probab=98.25  E-value=9.7e-07  Score=87.18  Aligned_cols=46  Identities=22%  Similarity=0.364  Sum_probs=39.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF  350 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~  350 (355)
                      +.+.|++||.||||||||||+|++.+.+.++|.|++|++.+...+.
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~   96 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT   96 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE
Confidence            4578999999999999999999999999999999999776655443

>PRK11058 GTPase HflX; Provisional

Probab=98.25  E-value=6e-06  Score=84.13  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=63.5

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcch-HHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCH-HLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~-~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      .+..+.+.+..+|++|+|+|+.+|...... .+.+++... ..++|+|+|+||+|+++....  .........+. .+.+
T Consensus       266 ~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~~~~~~~~~-~v~I  342 (426)
T PRK11058        266 AFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RIDRDEENKPI-RVWL  342 (426)
T ss_pred             HHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHHHHhcCCCc-eEEE
Confidence            345566778999999999999988643322 123344331 246899999999999764221  11111111232 4668


Q ss_pred             eecCCCChHHHHHHHHHHHh
Q 018454          280 SINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ||++|.|+++|++.|.+.+.
T Consensus       343 SAktG~GIdeL~e~I~~~l~  362 (426)
T PRK11058        343 SAQTGAGIPLLFQALTERLS  362 (426)
T ss_pred             eCCCCCCHHHHHHHHHHHhh
Confidence            99999999999999987764

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.24  E-value=3.7e-06  Score=86.10  Aligned_cols=86  Identities=27%  Similarity=0.347  Sum_probs=63.0

Q ss_pred             HHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454          203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       203 ~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ++.++..+..+|++|+|+|+.++....+..+   +.. ..++|+++|+||+||.+.....       ......++.+|++
T Consensus       285 i~~~~~~~~~aD~il~VvD~s~~~s~~~~~~---l~~-~~~~piiiV~NK~DL~~~~~~~-------~~~~~~~i~iSAk  353 (449)
T PRK05291        285 IERSREAIEEADLVLLVLDASEPLTEEDDEI---LEE-LKDKPVIVVLNKADLTGEIDLE-------EENGKPVIRISAK  353 (449)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCChhHHHH---HHh-cCCCCcEEEEEhhhccccchhh-------hccCCceEEEEee
Confidence            3456678999999999999998865433222   222 3578999999999997654322       1223346788999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.+.
T Consensus       354 tg~GI~~L~~~L~~~l~  370 (449)
T PRK05291        354 TGEGIDELREAIKELAF  370 (449)
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988764

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.24  E-value=3.9e-06  Score=74.11  Aligned_cols=88  Identities=18%  Similarity=0.134  Sum_probs=56.2

Q ss_pred             hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~vS  280 (355)
                      ..+..+|++|+|+|+.++....  ...+.+++.. ...+.|+++|+||+|+..........+.+..    .....++.+|
T Consensus        78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S  157 (174)
T cd04153          78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC  157 (174)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecc
Confidence            3567899999999998864321  1123333322 1135899999999998643222222233321    1223467889


Q ss_pred             ecCCCChHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLR  295 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~  295 (355)
                      |+++.|++++++.|.
T Consensus       158 A~~g~gi~e~~~~l~  172 (174)
T cd04153         158 ALTGEGLPEGLDWIA  172 (174)
T ss_pred             cCCCCCHHHHHHHHh
Confidence            999999999999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PTZ00258 GTP-binding protein; Provisional

Probab=98.24  E-value=9.8e-07  Score=88.70  Aligned_cols=44  Identities=25%  Similarity=0.256  Sum_probs=36.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQL  348 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l  348 (355)
                      ...+.|++||.||||||||+|+|.+.. +.++++||||++--.+.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~   62 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTAR   62 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEE
Confidence            456889999999999999999997665 69999999996544443

>PRK13768 GTPase; Provisional

Probab=98.24  E-value=5.4e-06  Score=78.67  Aligned_cols=98  Identities=18%  Similarity=0.076  Sum_probs=65.0

Q ss_pred             HHHHHHhhhcC--CCEEEEEecCCCCCCCcchHHHHHHH---hhcCCCcEEEEEeccCCCChhhHHHHHHHHh-------
Q 018454          202 IWGELYKVIDS--SDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWATKGWLRVLS-------  269 (355)
Q Consensus       202 i~~el~kvi~~--sDvVL~VvDardp~~s~~~~l~~~L~---~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~-------  269 (355)
                      .+..+.+.+..  +++|++|+|++.+....+.....++.   ....++|+++|+||+|++.....+....++.       
T Consensus       116 ~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~  195 (253)
T PRK13768        116 SGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLE  195 (253)
T ss_pred             HHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHH
Confidence            34445555544  89999999998765444433333332   1125799999999999987654333222222       


Q ss_pred             ---------------------hhCC-ceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          270 ---------------------KEYP-SLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       270 ---------------------~~~p-~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                                           ...+ ..++.+|+.++.|+++|++.|.+++.
T Consensus       196 ~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        196 ELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence                                 1122 35678899999999999999998874

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.24  E-value=8.7e-06  Score=82.52  Aligned_cols=103  Identities=14%  Similarity=0.132  Sum_probs=68.0

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH----HHHHHHHhh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSK  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~  270 (355)
                      +|| .++.......+..+|++|+|+|++++. .........++.. ...+++++|+||+|+++....    ......+..
T Consensus        93 PG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~  170 (411)
T PRK04000         93 PGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGIKNIVIVQNKIDLVSKERALENYEQIKEFVKG  170 (411)
T ss_pred             CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCCcEEEEEEeeccccchhHHHHHHHHHHHhcc
Confidence            454 346667777888999999999999875 3333333333332 123578999999999874322    122222221


Q ss_pred             hC--CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          271 EY--PSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       271 ~~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ..  ...++.+|++++.|+++|++.|.+.++.
T Consensus       171 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        171 TVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             ccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            11  2456788999999999999999886553

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=98.24  E-value=4e-06  Score=73.17  Aligned_cols=90  Identities=17%  Similarity=0.128  Sum_probs=59.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhh-H------------HHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWA-T------------KGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-~------------~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++.....  ..+...+....++.|+|+|+||+||.+... .            ..-...+.....
T Consensus        66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  145 (174)
T smart00174       66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG  145 (174)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC
Confidence            4678999999999988643221  123333443346899999999999975321 1            111112333333


Q ss_pred             -ceEEEeeecCCCChHHHHHHHHHHH
Q 018454          274 -SLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       274 -~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                       ...+.+|++++.|+++|++.|.+.+
T Consensus       146 ~~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      146 AVKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHh
Confidence             3578899999999999999886543

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.24  E-value=5.8e-06  Score=73.79  Aligned_cols=90  Identities=20%  Similarity=0.127  Sum_probs=56.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh--hh---CCceEEEee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS--KE---YPSLAFHAS  280 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~--~~---~p~~~f~vS  280 (355)
                      .+..+|++|+|+|+.++.....  ..+..+... ...++|+++|+||+|+............+.  ..   .+..++.+|
T Consensus        72 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (183)
T cd04152          72 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPAC  151 (183)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEee
Confidence            4788999999999988632111  111112111 124689999999999864322222222221  11   123467889


Q ss_pred             ecCCCChHHHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~  298 (355)
                      |+++.|+++|++.|.+..
T Consensus       152 A~~~~gi~~l~~~l~~~l  169 (183)
T cd04152         152 AIIGEGLQEGLEKLYEMI  169 (183)
T ss_pred             cccCCCHHHHHHHHHHHH
Confidence            999999999999887655

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01866 Rab2 Rab2 subfamily

Probab=98.23  E-value=8.6e-06  Score=71.19  Aligned_cols=92  Identities=15%  Similarity=0.108  Sum_probs=63.1

Q ss_pred             HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEe
Q 018454          205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~v  279 (355)
                      .....+..+|.+|+|+|+.++...  ..+..++..    ..++.|+++|+||+|+.... ........+........+.+
T Consensus        69 ~~~~~~~~~d~il~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  146 (168)
T cd01866          69 ITRSYYRGAAGALLVYDITRRETF--NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMET  146 (168)
T ss_pred             HHHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEE
Confidence            344567899999999999976432  344445432    12478999999999997432 22223333434445667889


Q ss_pred             eecCCCChHHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~  298 (355)
                      |++++.|+++++..+...+
T Consensus       147 Sa~~~~~i~~~~~~~~~~~  165 (168)
T cd01866         147 SAKTASNVEEAFINTAKEI  165 (168)
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999998776544

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.23  E-value=1.1e-06  Score=85.02  Aligned_cols=46  Identities=22%  Similarity=0.254  Sum_probs=41.0

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEE
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQL  348 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l  348 (355)
                      +.+.+.|++||.||||||||+|.|++.++|.||.-+.||++.-.++
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi  114 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI  114 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE
Confidence            3567899999999999999999999999999999999998765544

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.23  E-value=1e-06  Score=86.96  Aligned_cols=44  Identities=23%  Similarity=0.271  Sum_probs=37.8

Q ss_pred             eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      -.|+|||+||||||||||+|.+.+ ..++++|+||....+..+.|
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~  202 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRV  202 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEe
Confidence            468999999999999999999865 67999999997777776665

>cd04127 Rab27A Rab27a subfamily

Probab=98.23  E-value=7.7e-06  Score=71.86  Aligned_cols=91  Identities=15%  Similarity=0.218  Sum_probs=60.2

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hh--cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEe
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~--~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~v  279 (355)
                      ....+..+|++|+|+|+.++...  ..+..++.   ..  ..+.|+++|+||+||.+... ...-...+...+....+.+
T Consensus        80 ~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  157 (180)
T cd04127          80 TTAFFRDAMGFLLIFDLTNEQSF--LNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFET  157 (180)
T ss_pred             HHHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEE
Confidence            34467899999999999886432  22333332   21  23678999999999975321 1112233333344557889


Q ss_pred             eecCCCChHHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~  298 (355)
                      ||+++.|++++++.|.+..
T Consensus       158 Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         158 SAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999887543

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04128 Spg1 Spg1p

Probab=98.23  E-value=5.4e-06  Score=74.34  Aligned_cols=91  Identities=15%  Similarity=0.118  Sum_probs=58.8

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCCh----h--hHHHHHHHHhhhCCceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPA----W--ATKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~----~--~~~~w~~~l~~~~p~~~f~vS  280 (355)
                      ..+..+|++|+|+|+.++.+... ..+...+.........|+|+||+||...    .  ........+........+.+|
T Consensus        68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~S  147 (182)
T cd04128          68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCS  147 (182)
T ss_pred             HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEe
Confidence            35789999999999988754322 1222223322223344789999999631    1  112233344444556678899


Q ss_pred             ecCCCChHHHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~  298 (355)
                      |+++.|+++|++.|.+.+
T Consensus       148 Ak~g~~v~~lf~~l~~~l  165 (182)
T cd04128         148 TSHSINVQKIFKIVLAKA  165 (182)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999887554

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.23  E-value=7.8e-06  Score=73.54  Aligned_cols=86  Identities=17%  Similarity=0.174  Sum_probs=55.3

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh---hHHHHHHHHhh------hC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW---ATKGWLRVLSK------EY  272 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~---~~~~w~~~l~~------~~  272 (355)
                      +.......+..+|++|+|+|+.+........+...+..  .++|+++|+||+|+....   ....+.+.+..      ..
T Consensus        78 ~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (194)
T cd01891          78 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL  155 (194)
T ss_pred             HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccC
Confidence            34455567889999999999987543333333333322  478999999999997432   23344444422      12


Q ss_pred             CceEEEeeecCCCChHH
Q 018454          273 PSLAFHASINKSFGKGS  289 (355)
Q Consensus       273 p~~~f~vSa~~~~Gi~~  289 (355)
                      +..++.+|+++|.|+.+
T Consensus       156 ~~~iv~~Sa~~g~~~~~  172 (194)
T cd01891         156 DFPVLYASAKNGWASLN  172 (194)
T ss_pred             ccCEEEeehhccccccc
Confidence            44577889999987643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.23  E-value=5.4e-06  Score=84.37  Aligned_cols=97  Identities=20%  Similarity=0.264  Sum_probs=63.8

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCC----cchHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGT----RCHHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP  273 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s----~~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p  273 (355)
                      .+..+.++.++++|++|+|+|+.+....    ....+.+.|...   ..++|.|+|+||+||....  +.+ +.+.+...
T Consensus       225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l-~~l~~~l~  301 (424)
T PRK12297        225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENL-EEFKEKLG  301 (424)
T ss_pred             hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHH-HHHHHHhC
Confidence            3455667778999999999999754211    112233333321   2468999999999984322  111 22222233


Q ss_pred             ceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          274 SLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ..+|.+||.++.|+++|++.|.+.+..
T Consensus       302 ~~i~~iSA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        302 PKVFPISALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            457788999999999999999877653

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.22  E-value=8.6e-06  Score=69.87  Aligned_cols=87  Identities=18%  Similarity=0.150  Sum_probs=56.9

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc------CCCcEEEEEeccCCCChh-h-HHHHHHHHhhhCCceE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC------KHKHMILLLNKCDLVPAW-A-TKGWLRVLSKEYPSLA  276 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~------~~k~vILVlNK~DLvp~~-~-~~~w~~~l~~~~p~~~  276 (355)
                      ..+..+|++|+|+|+.++...  ..+..++.   ...      .+.|+++|+||+|+.+.. . ...... +........
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~  144 (168)
T cd04119          68 EFYKDTQGVLLVYDVTDRQSF--EALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WAESKGFKY  144 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHH--HhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HHHHcCCeE
Confidence            356889999999999987432  22333322   211      358899999999997421 1 122222 222333557


Q ss_pred             EEeeecCCCChHHHHHHHHHH
Q 018454          277 FHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       277 f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      |.+|++++.|++++++.|.+.
T Consensus       145 ~~~Sa~~~~gi~~l~~~l~~~  165 (168)
T cd04119         145 FETSACTGEGVNEMFQTLFSS  165 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999987644

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04118 Rab24 Rab24 subfamily

Probab=98.22  E-value=5.7e-06  Score=73.86  Aligned_cols=90  Identities=13%  Similarity=0.097  Sum_probs=59.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChh-----hHHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAW-----ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~-----~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|++|+|+|+.++..... ..+...+.....+.|+++|+||+||.+..     ........+...+...++.+|++
T Consensus        70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  149 (193)
T cd04118          70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSK  149 (193)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            4568999999999988643211 12333333333468999999999997532     11122233333344556889999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      ++.|+++|++.|.+.+
T Consensus       150 ~~~gv~~l~~~i~~~~  165 (193)
T cd04118         150 TGQNVDELFQKVAEDF  165 (193)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987655

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04110 Rab35 Rab35 subfamily

Probab=98.22  E-value=7.8e-06  Score=74.01  Aligned_cols=90  Identities=13%  Similarity=0.167  Sum_probs=61.7

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHH---HhhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ...+..+|++|+|+|+.++...  ..+..++   .......|+++|+||+||.+... .......+........|.+|++
T Consensus        73 ~~~~~~a~~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  150 (199)
T cd04110          73 STYYRGTHGVIVVYDVTNGESF--VNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAK  150 (199)
T ss_pred             HHHhCCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECC
Confidence            3467889999999999887532  2233333   33335689999999999976432 1222233333445668899999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      ++.|+++|++.|....
T Consensus       151 ~~~gi~~lf~~l~~~~  166 (199)
T cd04110         151 ENINVEEMFNCITELV  166 (199)
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999999886554

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04142 RRP22 RRP22 subfamily

Probab=98.22  E-value=9.3e-06  Score=73.98  Aligned_cols=93  Identities=19%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh----cCCCcEEEEEeccCCCChhhH-HHHHHHH-hhhCCceEEE
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH----CKHKHMILLLNKCDLVPAWAT-KGWLRVL-SKEYPSLAFH  278 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~----~~~k~vILVlNK~DLvp~~~~-~~w~~~l-~~~~p~~~f~  278 (355)
                      ....+..+|++|+|+|+.++.+.. ...+.+.+...    ..+.|+|+|+||+||...... ..-...+ .+......|.
T Consensus        74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e  153 (198)
T cd04142          74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLE  153 (198)
T ss_pred             HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEE
Confidence            344678999999999998864322 12222223221    256899999999999653211 1111122 2233455788


Q ss_pred             eeecCCCChHHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      +||++|.|+++|++.+....
T Consensus       154 ~Sak~g~~v~~lf~~i~~~~  173 (198)
T cd04142         154 CSAKYNWHILLLFKELLISA  173 (198)
T ss_pred             ecCCCCCCHHHHHHHHHHHh
Confidence            99999999999998776543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.21  E-value=4.1e-06  Score=74.40  Aligned_cols=89  Identities=13%  Similarity=0.112  Sum_probs=60.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhh-------------HHHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------~~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++......  .+...+....++.|+|||+||+||.....             ..+....+.+...
T Consensus        69 ~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~  148 (175)
T cd01874          69 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK  148 (175)
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhC
Confidence            56789999999999887543221  23333443335789999999999865321             1122233333343


Q ss_pred             -ceEEEeeecCCCChHHHHHHHHHH
Q 018454          274 -SLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       274 -~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                       ...|.+||++|.|++++++.+...
T Consensus       149 ~~~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         149 AVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHH
Confidence             567889999999999999887653

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.21  E-value=1e-05  Score=85.43  Aligned_cols=102  Identities=19%  Similarity=0.159  Sum_probs=68.6

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhHH----HHHHHHhh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWATK----GWLRVLSK  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~~----~w~~~l~~  270 (355)
                      +|| .++.......+..+|++|+|+|+.++......+...++..  .+.+ +|+|+||+|+++.....    ...+.+..
T Consensus        58 PGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~  134 (581)
T TIGR00475        58 PGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNS  134 (581)
T ss_pred             CCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            454 3455666777899999999999998643333222333432  4667 99999999998755322    12222222


Q ss_pred             h-C--CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          271 E-Y--PSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       271 ~-~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      . +  ...+|.+|+.+|.|+++|.+.|.++...
T Consensus       135 ~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       135 YIFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             hCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence            1 1  3457889999999999999988877654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.21  E-value=8.5e-06  Score=70.00  Aligned_cols=88  Identities=18%  Similarity=0.265  Sum_probs=59.7

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHH---HhhcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeec
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ...+..+|++++|+|+.++...  ..+..++   .....+.|+++|+||+|+...... ..-...+........|.+|++
T Consensus        69 ~~~~~~~~~~v~v~d~~~~~s~--~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  146 (162)
T cd04106          69 KAYYRGAQACILVFSTTDRESF--EAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVK  146 (162)
T ss_pred             HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence            3467899999999999887532  2333333   223458999999999999753221 111222333344457889999


Q ss_pred             CCCChHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQ  296 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q  296 (355)
                      ++.|+++|++.|.+
T Consensus       147 ~~~~v~~l~~~l~~  160 (162)
T cd04106         147 DDFNVTELFEYLAE  160 (162)
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999999988864

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.21  E-value=6.5e-06  Score=70.70  Aligned_cols=88  Identities=20%  Similarity=0.177  Sum_probs=57.3

Q ss_pred             hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~vS  280 (355)
                      ..+..+|++++|+|+.++....  ...+...+.. ...+.|+++|+||+|+..........+.+...    ....++.+|
T Consensus        62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  141 (158)
T cd00878          62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCS  141 (158)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEee
Confidence            4667899999999999874211  1122222221 12478999999999998644222222333221    234577889


Q ss_pred             ecCCCChHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLR  295 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~  295 (355)
                      ++++.|++++++.|.
T Consensus       142 a~~~~gv~~~~~~l~  156 (158)
T cd00878         142 AVTGDGLDEGLDWLL  156 (158)
T ss_pred             CCCCCCHHHHHHHHh
Confidence            999999999998875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.20  E-value=7e-06  Score=72.90  Aligned_cols=77  Identities=21%  Similarity=0.174  Sum_probs=54.4

Q ss_pred             hcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh----HHHHHHHHhhhC-CceEEEeeecCC
Q 018454          210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRVLSKEY-PSLAFHASINKS  284 (355)
Q Consensus       210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~~~-p~~~f~vSa~~~  284 (355)
                      .+.+|.+|+|+|++.+.......+.+++..  .++|+++|+||+|+.+...    ...+.+.+.... ...+|.+||+++
T Consensus        98 ~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g  175 (179)
T TIGR03598        98 RENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKK  175 (179)
T ss_pred             ChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCC
Confidence            345789999999998776655555556654  4789999999999986543    233444444332 236788999999


Q ss_pred             CChH
Q 018454          285 FGKG  288 (355)
Q Consensus       285 ~Gi~  288 (355)
                      .|++
T Consensus       176 ~gi~  179 (179)
T TIGR03598       176 TGID  179 (179)
T ss_pred             CCCC
Confidence            9873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01864 Rab19 Rab19 subfamily

Probab=98.20  E-value=1.2e-05  Score=69.86  Aligned_cols=92  Identities=13%  Similarity=0.094  Sum_probs=60.1

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCC-ceEEEeee
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYP-SLAFHASI  281 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p-~~~f~vSa  281 (355)
                      ....+..+|++|+|+|+.++.... ...+...+.. ...+.|+++|+||+|+.... ........+.+.+. ...+.+|+
T Consensus        69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (165)
T cd01864          69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSA  148 (165)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEEC
Confidence            344678899999999998875321 1223333332 22468899999999997432 11222233333333 34688999


Q ss_pred             cCCCChHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQF  297 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~  297 (355)
                      ++|.|++++++.|.+.
T Consensus       149 ~~~~~v~~~~~~l~~~  164 (165)
T cd01864         149 KESQNVEEAFLLMATE  164 (165)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999988653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.20  E-value=7e-06  Score=70.01  Aligned_cols=87  Identities=17%  Similarity=0.205  Sum_probs=56.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHH---HHHh--hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLER---HLKE--HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~---~L~~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .+..+|.+++|+|..++...  ..+..   .+..  ...+.|+++|+||+|+........-...+........+.+|+++
T Consensus        69 ~~~~~~~~i~v~~~~~~~s~--~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  146 (162)
T cd04138          69 YMRTGEGFLCVFAINSRKSF--EDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKT  146 (162)
T ss_pred             HHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCC
Confidence            56789999999998875421  12222   2222  12478999999999997643221112222233345578899999


Q ss_pred             CCChHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQF  297 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~  297 (355)
                      +.|++++++.|.+.
T Consensus       147 ~~gi~~l~~~l~~~  160 (162)
T cd04138         147 RQGVEEAFYTLVRE  160 (162)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999988653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.19  E-value=2e-05  Score=66.99  Aligned_cols=92  Identities=17%  Similarity=0.134  Sum_probs=63.7

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHh-----hhCCceEEE
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLS-----KEYPSLAFH  278 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~-----~~~p~~~f~  278 (355)
                      .......+..+.+++|+|+..+.......+.+++..  .+.|+++|+||+|+............+.     ......++.
T Consensus        73 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  150 (170)
T cd01876          73 EEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIIL  150 (170)
T ss_pred             HHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEE
Confidence            333444567789999999987765555556666664  4689999999999986544333322222     122245678


Q ss_pred             eeecCCCChHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      +|++++.|+.++++.|.++
T Consensus       151 ~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         151 FSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             EecCCCCCHHHHHHHHHHh
Confidence            8999999999999998765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd00879 Sar1 Sar1 subfamily

Probab=98.19  E-value=6.6e-06  Score=73.17  Aligned_cols=90  Identities=26%  Similarity=0.300  Sum_probs=58.2

Q ss_pred             hhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh--------------
Q 018454          208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK--------------  270 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~--------------  270 (355)
                      ..+..+|.+|+|+|+.++...  ....+...+.. ...+.|+++|+||+|+............+..              
T Consensus        82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (190)
T cd00879          82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVS  161 (190)
T ss_pred             HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccccccc
Confidence            456889999999999876321  11222222221 1246899999999999643222233333321              


Q ss_pred             -hCCceEEEeeecCCCChHHHHHHHHHH
Q 018454          271 -EYPSLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       271 -~~p~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                       ..+..+|.+||+++.|++++++.|.++
T Consensus       162 ~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         162 GIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             CceeEEEEEeEecCCCChHHHHHHHHhh
Confidence             123457889999999999999998764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.19  E-value=6.1e-06  Score=70.93  Aligned_cols=88  Identities=14%  Similarity=0.130  Sum_probs=58.7

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ..+..+|.+++|+|+.++...  ..+..++   ..  ...+.|+++|+||+||..... .......+.+......+.+||
T Consensus        69 ~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  146 (164)
T cd04145          69 QYMRTGEGFLLVFSVTDRGSF--EEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSA  146 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeC
Confidence            456789999999999886432  2222222   21  124689999999999965321 122233333334456789999


Q ss_pred             cCCCChHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQF  297 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~  297 (355)
                      +++.|++++++.|...
T Consensus       147 ~~~~~i~~l~~~l~~~  162 (164)
T cd04145         147 KDRLNVDKAFHDLVRV  162 (164)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999988654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04121 Rab40 Rab40 subfamily

Probab=98.18  E-value=1.2e-05  Score=72.89  Aligned_cols=92  Identities=13%  Similarity=0.080  Sum_probs=61.5

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      ..+..+|.+|+|+|+.++..... ..+...+....++.|+|||.||+||.... ....-.+.+.+......|.+||++|.
T Consensus        74 ~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~  153 (189)
T cd04121          74 SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNF  153 (189)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCC
Confidence            34579999999999998764322 12233333334678999999999996421 11112223333344567889999999


Q ss_pred             ChHHHHHHHHHHHh
Q 018454          286 GKGSLLSVLRQFAR  299 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~  299 (355)
                      |++++++.|.+.+.
T Consensus       154 ~V~~~F~~l~~~i~  167 (189)
T cd04121         154 NITESFTELARIVL  167 (189)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999998876543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04136 Rap_like Rap-like subfamily

Probab=98.18  E-value=6.7e-06  Score=70.62  Aligned_cols=89  Identities=16%  Similarity=0.220  Sum_probs=58.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|.+|+|+|+.++..... ..+...+..  ...+.|+|+|+||+||.+... .......+.+.+....+.+||+++
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  148 (163)
T cd04136          69 YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSK  148 (163)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence            4678999999999987653211 122223332  124689999999999975321 122223333344455788999999


Q ss_pred             CChHHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQF  297 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~  297 (355)
                      .|+.++++.|.+.
T Consensus       149 ~~v~~l~~~l~~~  161 (163)
T cd04136         149 INVDEVFADLVRQ  161 (163)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999988643

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01865 Rab3 Rab3 subfamily

Probab=98.18  E-value=1.2e-05  Score=69.96  Aligned_cols=90  Identities=14%  Similarity=0.159  Sum_probs=60.1

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ...+..+|++|+|+|+.++...  ..+..++..   . ..+.|+++|+||+||.+.... ..-...+........|.+||
T Consensus        68 ~~~~~~~~~~l~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  145 (165)
T cd01865          68 TAYYRGAMGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASA  145 (165)
T ss_pred             HHHccCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEEC
Confidence            3457899999999999876422  233333332   2 136789999999999754321 11122233334455788999


Q ss_pred             cCCCChHHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~  298 (355)
                      +++.|+++|++.|.+.+
T Consensus       146 ~~~~gv~~l~~~l~~~~  162 (165)
T cd01865         146 KENINVKQVFERLVDII  162 (165)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999887654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04140 ARHI_like ARHI subfamily

Probab=98.17  E-value=6.5e-06  Score=71.65  Aligned_cols=89  Identities=15%  Similarity=0.147  Sum_probs=58.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh----cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH----CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~----~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|.+|+|+|+.++.+.. ...+...+...    ..+.|+++|+||+|+.+.. ....-...+...+....+.+||+
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~  148 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAK  148 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecC
Confidence            456889999999998875431 12233333331    1468999999999997522 11111122223334456789999


Q ss_pred             CCCChHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQF  297 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~  297 (355)
                      +|.|++++++.|.++
T Consensus       149 ~g~~v~~~f~~l~~~  163 (165)
T cd04140         149 TNHNVQELFQELLNL  163 (165)
T ss_pred             CCCCHHHHHHHHHhc
Confidence            999999999988765

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PRK11058 GTPase HflX; Provisional

Probab=98.17  E-value=2.2e-06  Score=87.27  Aligned_cols=45  Identities=22%  Similarity=0.168  Sum_probs=36.7

Q ss_pred             eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeec
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYF  352 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~  352 (355)
                      ..|++||+||||||||+|+|.+.++. +++.||+|++....-+..+
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~  242 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVA  242 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeC
Confidence            47999999999999999999988765 8899999876655444443

>cd01892 Miro2 Miro2 subfamily

Probab=98.17  E-value=6.8e-06  Score=72.39  Aligned_cols=88  Identities=17%  Similarity=0.126  Sum_probs=57.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhh--cCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCc-eEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEH--CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPS-LAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~-~~f~vSa~~~  284 (355)
                      .+..+|++|+|+|+.++...  ..+..++...  ..+.|+++|+||+||.+.... ..-.+.+.+.+.. ..+.+||+++
T Consensus        74 ~~~~~d~~llv~d~~~~~s~--~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (169)
T cd01892          74 ELAACDVACLVYDSSDPKSF--SYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG  151 (169)
T ss_pred             hhhcCCEEEEEEeCCCHHHH--HHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence            46899999999999887321  2333333321  136899999999999754311 0011222232222 2477899999


Q ss_pred             CChHHHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQFA  298 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~  298 (355)
                      .|+++|++.|.+.+
T Consensus       152 ~~v~~lf~~l~~~~  165 (169)
T cd01892         152 DSSNELFTKLATAA  165 (169)
T ss_pred             ccHHHHHHHHHHHh
Confidence            99999999887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.16  E-value=1.1e-05  Score=71.58  Aligned_cols=91  Identities=13%  Similarity=0.086  Sum_probs=58.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChh-----hHHHHHHHHhhhCCc-eEEEee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAW-----ATKGWLRVLSKEYPS-LAFHAS  280 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~-----~~~~w~~~l~~~~p~-~~f~vS  280 (355)
                      .+..+|++|+|+|+.++......  .+...+.....+.|+|+|+||+||.+..     ....-...+...+.. ..|.+|
T Consensus        69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  148 (187)
T cd04132          69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECS  148 (187)
T ss_pred             hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEcc
Confidence            56889999999999886533211  1122222223578999999999997532     111112222233333 568899


Q ss_pred             ecCCCChHHHHHHHHHHHh
Q 018454          281 INKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++++.|+.++++.|.+.+.
T Consensus       149 a~~~~~v~~~f~~l~~~~~  167 (187)
T cd04132         149 AKTMENVEEVFDTAIEEAL  167 (187)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999998876654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=98.16  E-value=1.5e-05  Score=69.28  Aligned_cols=88  Identities=16%  Similarity=0.100  Sum_probs=59.7

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ...+..+|.+|+|+|+.++...  ..+..++..    ..++.|+++|+||+||..... .......+........+.+||
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  146 (166)
T cd04122          69 RSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSA  146 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEEC
Confidence            4467899999999999987532  234444432    124678999999999965321 222223333334556788999


Q ss_pred             cCCCChHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQ  296 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q  296 (355)
                      ++|.|+++++..|..
T Consensus       147 ~~~~~i~e~f~~l~~  161 (166)
T cd04122         147 KTGENVEDAFLETAK  161 (166)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999998877653

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01863 Rab18 Rab18 subfamily

Probab=98.16  E-value=1.2e-05  Score=69.16  Aligned_cols=88  Identities=17%  Similarity=0.071  Sum_probs=59.0

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh--hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE--HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ...+..+|.+|+|+|+.++...  ..+..++   ..  ...+.|+++|+||+|+........-...+........+.+|+
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa  144 (161)
T cd01863          67 SSYYRGAQGVILVYDVTRRDTF--TNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSA  144 (161)
T ss_pred             HHHhCCCCEEEEEEECCCHHHH--HhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEec
Confidence            3456789999999999876532  1233232   22  124688999999999974332222223333344566788999


Q ss_pred             cCCCChHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQ  296 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q  296 (355)
                      ++|.|++++++.|.+
T Consensus       145 ~~~~gi~~~~~~~~~  159 (161)
T cd01863         145 KTRDGVQQAFEELVE  159 (161)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999999988754

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.15  E-value=1.2e-05  Score=69.65  Aligned_cols=90  Identities=14%  Similarity=0.180  Sum_probs=59.7

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ...+..+|.+|+|+|+.++..  ...+..++..   . ..+.|+++|+||+|+...... ..-...+........+.+|+
T Consensus        69 ~~~~~~~~~ii~v~d~~~~~s--~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  146 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQES--FNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSA  146 (166)
T ss_pred             HHHhCcCCEEEEEEECcCHHH--HHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence            345688999999999988642  2233333332   1 146899999999998653211 11122233334456788999


Q ss_pred             cCCCChHHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~  298 (355)
                      +++.|++++++.|.+.+
T Consensus       147 ~~~~~v~~~~~~i~~~~  163 (166)
T cd01869         147 KNATNVEQAFMTMAREI  163 (166)
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999886543

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=98.15  E-value=1.1e-05  Score=72.27  Aligned_cols=90  Identities=18%  Similarity=0.123  Sum_probs=57.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEeee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHASI  281 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~vSa  281 (355)
                      .+..+|++|+|+|+.++.....  ..+..++.. ...+.|++||+||+|+..........+.+.-..    +...+.+||
T Consensus        81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa  160 (181)
T PLN00223         81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
T ss_pred             HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence            5688999999999998643211  122222221 124789999999999865433333333332111    123456899


Q ss_pred             cCCCChHHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~  298 (355)
                      ++|.|+.++++.|.+.+
T Consensus       161 ~~g~gv~e~~~~l~~~~  177 (181)
T PLN00223        161 TSGEGLYEGLDWLSNNI  177 (181)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999986554

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.15  E-value=1.1e-05  Score=72.30  Aligned_cols=92  Identities=20%  Similarity=0.160  Sum_probs=58.2

Q ss_pred             hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~vS  280 (355)
                      ..+..+|++|+|+|+.++....  ...+.+.+.. ...+.|++||+||+||............+...    .+..++.+|
T Consensus        80 ~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S  159 (182)
T PTZ00133         80 HYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCC  159 (182)
T ss_pred             HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeee
Confidence            4578999999999998764211  1123333322 12468999999999986432222222333211    122345689


Q ss_pred             ecCCCChHHHHHHHHHHHh
Q 018454          281 INKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~  299 (355)
                      |++|.|+.++++.|.+.+.
T Consensus       160 a~tg~gv~e~~~~l~~~i~  178 (182)
T PTZ00133        160 ATTAQGLYEGLDWLSANIK  178 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999876553

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.15  E-value=2.3e-05  Score=71.74  Aligned_cols=87  Identities=21%  Similarity=0.183  Sum_probs=67.1

Q ss_pred             cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCce--EEEeeecCC
Q 018454          211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSL--AFHASINKS  284 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~--~f~vSa~~~  284 (355)
                      .+-..+++|+|+|.++...+.++.+++..  .+.|+++|+||+|-++.....+......+    ..+..  ++..|+.++
T Consensus       105 ~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k  182 (200)
T COG0218         105 ANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKK  182 (200)
T ss_pred             hhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccc
Confidence            34578999999999999989999999986  68999999999999987654433333332    22322  566788999


Q ss_pred             CChHHHHHHHHHHHh
Q 018454          285 FGKGSLLSVLRQFAR  299 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~  299 (355)
                      .|+++|.+.|.+.+.
T Consensus       183 ~Gi~~l~~~i~~~~~  197 (200)
T COG0218         183 KGIDELKAKILEWLK  197 (200)
T ss_pred             cCHHHHHHHHHHHhh
Confidence            999999999887764

>cd01868 Rab11_like Rab11-like

Probab=98.14  E-value=1.6e-05  Score=68.73  Aligned_cols=88  Identities=18%  Similarity=0.110  Sum_probs=59.4

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---hc-CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HC-KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~~-~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|.+|+|+|+.++...  ..+.+++..   .. .+.|+++|+||+|+.... ........+........+.+||+
T Consensus        71 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  148 (165)
T cd01868          71 AYYRGAVGALLVYDITKKQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSAL  148 (165)
T ss_pred             HHHCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence            456889999999999876532  334444432   22 258999999999997532 12222223333345567889999


Q ss_pred             CCCChHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQF  297 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~  297 (355)
                      ++.|+++|++.|.+.
T Consensus       149 ~~~~v~~l~~~l~~~  163 (165)
T cd01868         149 DGTNVEEAFKQLLTE  163 (165)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999987643

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01873 RhoBTB RhoBTB subfamily

Probab=98.14  E-value=8.1e-06  Score=74.31  Aligned_cols=88  Identities=22%  Similarity=0.231  Sum_probs=59.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCCh--------------------hhHHHHHH
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPA--------------------WATKGWLR  266 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~--------------------~~~~~w~~  266 (355)
                      .+..+|++|+|.|..++.+....  .+...+....++.|+|+|.||+||...                    .+...-..
T Consensus        84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~  163 (195)
T cd01873          84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR  163 (195)
T ss_pred             cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence            57899999999999987643221  233334433357899999999998631                    11112223


Q ss_pred             HHhhhCCceEEEeeecCCCChHHHHHHHHH
Q 018454          267 VLSKEYPSLAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       267 ~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      .+.+......|.+||+++.|++++++.+.+
T Consensus       164 ~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         164 AVAKELGIPYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             HHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence            333334455678999999999999987754

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.14  E-value=1e-05  Score=68.15  Aligned_cols=90  Identities=18%  Similarity=0.195  Sum_probs=57.6

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEe
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHA  279 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~v  279 (355)
                      ...+..+|++++|+|+.++.....  ..+...+.. ...++|+++|+||+|+........+...+...    .....+.+
T Consensus        62 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (159)
T cd04159          62 ERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSI  141 (159)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEE
Confidence            345788999999999987542110  112222211 12468999999999997654333333333211    12346788


Q ss_pred             eecCCCChHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q  296 (355)
                      |++++.|++++++.|.+
T Consensus       142 Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         142 SCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             EeccCCChHHHHHHHhh
Confidence            99999999999998864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.13  E-value=1.3e-05  Score=72.41  Aligned_cols=90  Identities=18%  Similarity=0.147  Sum_probs=59.4

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHH---HHh-----hcCCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCC-ceEE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKE-----HCKHKHMILLLNKCDLVPA-WATKGWLRVLSKEYP-SLAF  277 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~---L~~-----~~~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p-~~~f  277 (355)
                      ..+..+|++|+|+|+.++....  .+..+   +..     ...+.|+|||+||+||.+. .........+..... ...|
T Consensus        69 ~~~~~a~~~ilv~D~t~~~s~~--~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (201)
T cd04107          69 VYYRGAVGAIIVFDVTRPSTFE--AVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWF  146 (201)
T ss_pred             HHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEE
Confidence            4568999999999998875422  22222   211     1246799999999999732 122222333333333 4578


Q ss_pred             EeeecCCCChHHHHHHHHHHHh
Q 018454          278 HASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      .+||+++.|++++++.|.+.+.
T Consensus       147 e~Sak~~~~v~e~f~~l~~~l~  168 (201)
T cd04107         147 ETSAKEGINIEEAMRFLVKNIL  168 (201)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999998876553

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.13  E-value=1.9e-05  Score=68.86  Aligned_cols=90  Identities=17%  Similarity=0.210  Sum_probs=59.5

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ...+.++|++|+|+|+.++..  ...+..++..   . ..+.|+++|+||+||.... ....-...+........+.+|+
T Consensus        70 ~~~~~~ad~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  147 (167)
T cd01867          70 TAYYRGAMGIILVYDITDEKS--FENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSA  147 (167)
T ss_pred             HHHhCCCCEEEEEEECcCHHH--HHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence            356789999999999987643  2233344332   1 2467999999999997432 1111122222333455788999


Q ss_pred             cCCCChHHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~  298 (355)
                      +++.|++++++.|.+..
T Consensus       148 ~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         148 KANINVEEAFFTLAKDI  164 (167)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999886543

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.13  E-value=1.3e-05  Score=69.10  Aligned_cols=90  Identities=13%  Similarity=0.158  Sum_probs=58.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|.+++|+|+.++..... ..+...+..  ...+.|+++|+||+|+.+... ...-...+...+....|.+||+++
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  147 (164)
T smart00173       68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKER  147 (164)
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCC
Confidence            4678999999999988643211 112222222  123689999999999976321 111222233334456788999999


Q ss_pred             CChHHHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQFA  298 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~  298 (355)
                      .|+++|++.|.+.+
T Consensus       148 ~~i~~l~~~l~~~~  161 (164)
T smart00173      148 VNVDEAFYDLVREI  161 (164)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999887654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04123 Rab21 Rab21 subfamily

Probab=98.12  E-value=1.9e-05  Score=67.37  Aligned_cols=87  Identities=20%  Similarity=0.223  Sum_probs=58.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHH---HHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~---L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .+..+|.+++|+|+.++...  ..+..+   +.. ...+.|+++|+||+|+..... ...-...+........+.+|+++
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  146 (162)
T cd04123          69 YYRDADGAILVYDITDADSF--QKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKT  146 (162)
T ss_pred             HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence            45789999999999876432  222222   222 113689999999999975321 12222223334455678899999


Q ss_pred             CCChHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQF  297 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~  297 (355)
                      +.|++++++.|.+.
T Consensus       147 ~~gi~~~~~~l~~~  160 (162)
T cd04123         147 GKGIEELFLSLAKR  160 (162)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999998654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.12  E-value=1.7e-05  Score=68.19  Aligned_cols=90  Identities=14%  Similarity=0.146  Sum_probs=58.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCC-cchHHHHHHHhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGT-RCHHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s-~~~~l~~~L~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ..+..+|++|+|+|+.++... ....+...+... ..+.|+++|+||+|+.+.. ....-...+........+.+|++++
T Consensus        69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  148 (163)
T cd01860          69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTG  148 (163)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCC
Confidence            356789999999999876422 112232333332 2467899999999987421 1111122223333456788999999


Q ss_pred             CChHHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQF  297 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~  297 (355)
                      .|+.++++.|.+.
T Consensus       149 ~~v~~l~~~l~~~  161 (163)
T cd01860         149 ENVNELFTEIAKK  161 (163)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999988764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd00157 Rho Rho (Ras homology) family

Probab=98.12  E-value=7.3e-06  Score=70.93  Aligned_cols=88  Identities=17%  Similarity=0.123  Sum_probs=57.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH------------HHHHhhhCCc
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW------------LRVLSKEYPS  274 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w------------~~~l~~~~p~  274 (355)
                      .+..+|++++|+|+.++.....  ..+...+.....+.|+++|+||+|+.+......|            ...+...+..
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  147 (171)
T cd00157          68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA  147 (171)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence            4478999999999987643211  1122333333357999999999999765432111            1222222333


Q ss_pred             -eEEEeeecCCCChHHHHHHHHH
Q 018454          275 -LAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       275 -~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                       ..+.+|++++.|+++|++.|.+
T Consensus       148 ~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         148 IGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             eEEEEeecCCCCCHHHHHHHHhh
Confidence             6788899999999999988753

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01871 Rac1_like Rac1-like subfamily

Probab=98.11  E-value=9.7e-06  Score=71.92  Aligned_cols=88  Identities=16%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhh-HH------------HHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-TK------------GWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~-~~------------~w~~~l~~~~p  273 (355)
                      .+..+|.+|+|+|+.++......  .+...+.....+.|+|+|.||+||.+... .+            .-...+.+.+.
T Consensus        69 ~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  148 (174)
T cd01871          69 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  148 (174)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            56789999999999987543221  23333333335789999999999964211 11            11112222333


Q ss_pred             -ceEEEeeecCCCChHHHHHHHHH
Q 018454          274 -SLAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       274 -~~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                       ...+.+||++|.|++++++.|.+
T Consensus       149 ~~~~~e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         149 AVKYLECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             CcEEEEecccccCCHHHHHHHHHH
Confidence             35678999999999999988754

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04176 Rap2 Rap2 subgroup

Probab=98.08  E-value=1.1e-05  Score=69.73  Aligned_cols=88  Identities=16%  Similarity=0.155  Sum_probs=57.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh--cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|.+|+|+|+.++.... ...+...+...  ..++|+++|+||+|+.+... .......+........+.+||+++
T Consensus        69 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  148 (163)
T cd04176          69 YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSK  148 (163)
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCC
Confidence            467899999999998865321 12222223221  24789999999999965322 112223333334455688999999


Q ss_pred             CChHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQ  296 (355)
Q Consensus       285 ~Gi~~Ll~~L~q  296 (355)
                      .|+.+++..|.+
T Consensus       149 ~~v~~l~~~l~~  160 (163)
T cd04176         149 TMVNELFAEIVR  160 (163)
T ss_pred             CCHHHHHHHHHH
Confidence            999999988764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.08  E-value=2.2e-05  Score=66.96  Aligned_cols=93  Identities=22%  Similarity=0.198  Sum_probs=73.6

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      ++.+..+.-...++|++++|..+.||...+++.+....     .+|+|-|++|+||.....++.-.+.|.+.+...+|.+
T Consensus        52 ~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-----~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~  126 (148)
T COG4917          52 PRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-----VKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFET  126 (148)
T ss_pred             hHHHHHHHHHhhccceeeeeecccCccccCCccccccc-----ccceEEEEecccccchHhHHHHHHHHHHcCCcceEEE
Confidence            45556677778999999999999999888887776543     4679999999999865555555555555566678889


Q ss_pred             eecCCCChHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~  297 (355)
                      |+.++.|+++|++.|...
T Consensus       127 s~~d~~gv~~l~~~L~~~  144 (148)
T COG4917         127 SAVDNQGVEELVDYLASL  144 (148)
T ss_pred             eccCcccHHHHHHHHHhh
Confidence            999999999999998754

>cd04120 Rab12 Rab12 subfamily

Probab=98.08  E-value=2.1e-05  Score=72.07  Aligned_cols=91  Identities=12%  Similarity=0.078  Sum_probs=59.9

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhh-CCceEEEeeecC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKE-YPSLAFHASINK  283 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~-~p~~~f~vSa~~  283 (355)
                      ..+..+|.+|+|+|+.++.+... ..+...+... ..+.|+|+|.||+||..... ...-...+... .....|.+||++
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAkt  147 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKD  147 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCC
Confidence            46789999999999998754322 1222333322 24689999999999964322 12222223222 234567899999


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      |.|++++++.|.+.+
T Consensus       148 g~gV~e~F~~l~~~~  162 (202)
T cd04120         148 NFNVDEIFLKLVDDI  162 (202)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999998887554

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.08  E-value=1e-05  Score=70.21  Aligned_cols=92  Identities=23%  Similarity=0.208  Sum_probs=58.9

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh---cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH---CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ...+..+|++|+|+|+.++.+... ..+...+...   ..+.|+|+|+||+|+..... .......+.+.+....|.+|+
T Consensus        66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  145 (165)
T cd04146          66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSA  145 (165)
T ss_pred             HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCC
Confidence            345678999999999988743211 2223333331   24799999999999854321 111222233333455678999


Q ss_pred             cCCC-ChHHHHHHHHHHH
Q 018454          282 NKSF-GKGSLLSVLRQFA  298 (355)
Q Consensus       282 ~~~~-Gi~~Ll~~L~q~~  298 (355)
                      +++. |++++++.|.+.+
T Consensus       146 ~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         146 AEDYDGVHSVFHELCREV  163 (165)
T ss_pred             CCCchhHHHHHHHHHHHH
Confidence            9995 9999999887654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04175 Rap1 Rap1 subgroup

Probab=98.08  E-value=1.4e-05  Score=69.24  Aligned_cols=89  Identities=17%  Similarity=0.180  Sum_probs=58.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|.+|+|+|..++..... ..+...+..  ...+.|+++|+||+||.+... .......+.+......+.+||+++
T Consensus        69 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  148 (164)
T cd04175          69 YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAK  148 (164)
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCC
Confidence            5678999999999876643211 122222322  235789999999999975321 112223333334455788999999


Q ss_pred             CChHHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQF  297 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~  297 (355)
                      .|+.+++..|.+.
T Consensus       149 ~~v~~~~~~l~~~  161 (164)
T cd04175         149 INVNEIFYDLVRQ  161 (164)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999988654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04133 Rop_like Rop subfamily

Probab=98.08  E-value=1.5e-05  Score=71.48  Aligned_cols=90  Identities=13%  Similarity=0.058  Sum_probs=61.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChh-----------hHHHHHHHHhhhCCc-
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAW-----------ATKGWLRVLSKEYPS-  274 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~-----------~~~~w~~~l~~~~p~-  274 (355)
                      .+..+|.+|+|.|..++.+....  .+...+.....+.|+|||.||+||.+..           +..+-...+.+.+.. 
T Consensus        69 ~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~  148 (176)
T cd04133          69 SYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAA  148 (176)
T ss_pred             hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCC
Confidence            56799999999999987654321  2233333333578999999999996531           112222333344444 


Q ss_pred             eEEEeeecCCCChHHHHHHHHHHH
Q 018454          275 LAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       275 ~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      ..+.+||+++.|++++++.|.+.+
T Consensus       149 ~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         149 AYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             EEEECCCCcccCHHHHHHHHHHHH
Confidence            467899999999999999887653

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.07  E-value=2.4e-05  Score=66.95  Aligned_cols=90  Identities=16%  Similarity=0.131  Sum_probs=57.9

Q ss_pred             hhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCCh-hh-HHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPA-WA-TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~-~~-~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|.+++|+|+.++...  ....+..++.. ...++|+++|+||+|+... .. ...... +...+...++.+|++
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~  145 (164)
T cd04139          67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN-LARQWGVPYVETSAK  145 (164)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH-HHHHhCCeEEEeeCC
Confidence            467888999999999876421  11222222221 1247999999999999762 11 121112 222233456889999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      ++.|+++|++.|.+.+
T Consensus       146 ~~~gi~~l~~~l~~~~  161 (164)
T cd04139         146 TRQNVEKAFYDLVREI  161 (164)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999887554

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.07  E-value=2.4e-05  Score=83.01  Aligned_cols=96  Identities=18%  Similarity=0.094  Sum_probs=64.2

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC---CceEEE
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY---PSLAFH  278 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~---p~~~f~  278 (355)
                      +..+....+..+|.+|+|+|+.++...........+..  .+.|+|+|+||+|+..... ....+.+....   +..++.
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~~~vi~  163 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NDLEIIPVLNKIDLPAADP-ERVKQEIEDVIGIDASDAVL  163 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCcccH-HHHHHHHHHHhCCCcceEEE
Confidence            44555667889999999999998754332222222222  4789999999999864321 11222222221   234688


Q ss_pred             eeecCCCChHHHHHHHHHHHhh
Q 018454          279 ASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      +||+++.|+.+|++.|.+.++.
T Consensus       164 iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        164 VSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             EecCCCCCHHHHHHHHHHhCcc
Confidence            9999999999999999887764

>cd01870 RhoA_like RhoA-like subfamily

Probab=98.07  E-value=1.8e-05  Score=69.01  Aligned_cols=89  Identities=17%  Similarity=0.174  Sum_probs=56.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH-----------HH--HHHhhh-C
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKG-----------WL--RVLSKE-Y  272 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~-----------w~--~~l~~~-~  272 (355)
                      .+..+|++++|.|+.++.+...  ..+...+.....+.|+++|+||+||.+......           |.  ..+... .
T Consensus        69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~  148 (175)
T cd01870          69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG  148 (175)
T ss_pred             ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcC
Confidence            4578999999999987643211  112223333235789999999999875432110           11  111122 2


Q ss_pred             CceEEEeeecCCCChHHHHHHHHHH
Q 018454          273 PSLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       273 p~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      ....+.+||+++.|++++++.|.+.
T Consensus       149 ~~~~~~~Sa~~~~~v~~lf~~l~~~  173 (175)
T cd01870         149 AFGYMECSAKTKEGVREVFEMATRA  173 (175)
T ss_pred             CcEEEEeccccCcCHHHHHHHHHHH
Confidence            3457889999999999999988754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04143 Rhes_like Rhes_like subfamily

Probab=98.06  E-value=2.3e-05  Score=74.09  Aligned_cols=112  Identities=20%  Similarity=0.177  Sum_probs=69.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCc-chHHHHHHHh----------hcCCCcEEEEEeccCCCCh-hh-HHHHHHHHhhhCCce
Q 018454          209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKE----------HCKHKHMILLLNKCDLVPA-WA-TKGWLRVLSKEYPSL  275 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~----------~~~~k~vILVlNK~DLvp~-~~-~~~w~~~l~~~~p~~  275 (355)
                      .+..+|++|+|+|+.++.... ...+...+..          ...+.|+|+|+||+||... .+ ..+..+.+.......
T Consensus        68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~  147 (247)
T cd04143          68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA  147 (247)
T ss_pred             HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence            357899999999998764321 1122222321          1246899999999999742 11 122222232223455


Q ss_pred             EEEeeecCCCChHHHHHHHHHHHhhhcc-----ccceEEEEeecCCCChhH
Q 018454          276 AFHASINKSFGKGSLLSVLRQFARLKSD-----KQAISVGFVGYPNVGKSS  321 (355)
Q Consensus       276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~-----~~~i~V~~vG~pNVGKSS  321 (355)
                      .+.+||+++.|+++|++.|.+.+....+     ...++| ..|-+.-+||-
T Consensus       148 ~~evSAktg~gI~elf~~L~~~~~~p~e~~~~~~~~~~~-~~~~~~~~~~~  197 (247)
T cd04143         148 YFEVSAKKNSNLDEMFRALFSLAKLPNEMSPSLHRKISV-QYGDALHKKSR  197 (247)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhccccccCccccceeee-eeccccccccc
Confidence            7889999999999999999887654322     234554 44666666664

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.06  E-value=2.5e-05  Score=82.80  Aligned_cols=96  Identities=20%  Similarity=0.161  Sum_probs=64.6

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChh---hHHHHHHHHhhhCCceE
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAW---ATKGWLRVLSKEYPSLA  276 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~---~~~~w~~~l~~~~p~~~  276 (355)
                      ++.......+..+|.+|+|+|+.++...... .+...+ .  .+.|+|+|+||+|+....   ....+.+.+. ..+..+
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~--~~ipiIiViNKiDl~~~~~~~~~~el~~~lg-~~~~~v  157 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E--NDLEIIPVINKIDLPSADPERVKKEIEEVIG-LDASEA  157 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H--cCCCEEEEEECcCCCccCHHHHHHHHHHHhC-CCcceE
Confidence            3445566788999999999999987543322 222222 2  478999999999986422   1123322221 112246


Q ss_pred             EEeeecCCCChHHHHHHHHHHHhh
Q 018454          277 FHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       277 f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      +.+||++|.|+++|++.|.+.++.
T Consensus       158 i~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       158 ILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             EEeeccCCCCHHHHHHHHHHhCCC
Confidence            789999999999999999887764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.05  E-value=4.3e-06  Score=85.02  Aligned_cols=43  Identities=23%  Similarity=0.310  Sum_probs=35.2

Q ss_pred             eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF  350 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~  350 (355)
                      ..|+|||+||||||||||+|.+.+ .+++++|+||..-....+.
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~  201 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVE  201 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEE
Confidence            478999999999999999999766 6789999999655444443

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.05  E-value=1.8e-05  Score=71.42  Aligned_cols=91  Identities=19%  Similarity=0.182  Sum_probs=57.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCc-chHHHHHHHh--hcCCCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKE--HCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|++|+|+|+.++.... ...+...+..  ...++|+|+|+||+|+.+...   .....+.....+...++.+|++
T Consensus        67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  146 (198)
T cd04147          67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAK  146 (198)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCC
Confidence            578999999999998764321 1111122222  124789999999999976311   1111111211222346778999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.+.
T Consensus       147 ~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         147 DNENVLEVFKELLRQAN  163 (198)
T ss_pred             CCCCHHHHHHHHHHHhh
Confidence            99999999999876553

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=98.05  E-value=2.8e-05  Score=66.97  Aligned_cols=88  Identities=16%  Similarity=0.042  Sum_probs=59.6

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ...+..+|.+|+|+|+.++...  ..+..++..    ..++.|+++|+||+|+..... ...-...+........+.+|+
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  144 (161)
T cd04113          67 RSYYRGAAGALLVYDITNRTSF--EALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSA  144 (161)
T ss_pred             HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEEC
Confidence            3456789999999999886533  223333332    225789999999999975321 111222233334466888999


Q ss_pred             cCCCChHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQ  296 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q  296 (355)
                      +++.|++++++.|.+
T Consensus       145 ~~~~~i~~~~~~~~~  159 (161)
T cd04113         145 LTGENVEEAFLKCAR  159 (161)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999999988754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.04  E-value=3.4e-05  Score=68.11  Aligned_cols=90  Identities=13%  Similarity=0.081  Sum_probs=58.4

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcC-CCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEe
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCK-HKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~-~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~v  279 (355)
                      ..+..+|++|+|+|+.++...  ..+..++.   + ..+ ..|+++|.||+||.+...   ...-...+........+.+
T Consensus        68 ~~~~~ad~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~  145 (170)
T cd04108          68 TYYRGAQAIIIVFDLTDVASL--EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSV  145 (170)
T ss_pred             HHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEE
Confidence            457899999999999875322  12233332   2 112 245899999999975432   1111122333344556788


Q ss_pred             eecCCCChHHHHHHHHHHHh
Q 018454          280 SINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      |++++.|+++|++.|.+.+.
T Consensus       146 Sa~~g~~v~~lf~~l~~~~~  165 (170)
T cd04108         146 SALSGENVREFFFRVAALTF  165 (170)
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999887764

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.04  E-value=2.4e-05  Score=71.61  Aligned_cols=90  Identities=11%  Similarity=0.100  Sum_probs=60.5

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFG  286 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~G  286 (355)
                      ..+..+|++|+|+|+.+...... ..+...+.....+.|+|||+||+||........-. .+........|.+||+++.|
T Consensus        63 ~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~  141 (200)
T smart00176       63 GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI-TFHRKKNLQYYDISAKSNYN  141 (200)
T ss_pred             HHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHH-HHHHHcCCEEEEEeCCCCCC
Confidence            36788999999999998753211 12233333333578999999999985432221111 22233455678899999999


Q ss_pred             hHHHHHHHHHHH
Q 018454          287 KGSLLSVLRQFA  298 (355)
Q Consensus       287 i~~Ll~~L~q~~  298 (355)
                      +.++++.|.+.+
T Consensus       142 v~~~F~~l~~~i  153 (200)
T smart00176      142 FEKPFLWLARKL  153 (200)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887655

Ran is involved in the active transport of proteins through nuclear pores.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.04  E-value=4.2e-06  Score=86.58  Aligned_cols=45  Identities=24%  Similarity=0.286  Sum_probs=36.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      -..|+|||+||||||||||+|.+.+ .+++++|+||+......+.+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~  203 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQA  203 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEE
Confidence            3578999999999999999999765 57899999996655555543

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.04  E-value=1.4e-05  Score=70.26  Aligned_cols=87  Identities=11%  Similarity=0.144  Sum_probs=57.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhh-------------HHHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------~~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++.....  ..+...+.....+.|+++|+||+||.+...             ...-...+.+...
T Consensus        68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~  147 (173)
T cd04130          68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG  147 (173)
T ss_pred             ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence            5678999999999998764322  123334443335789999999999975321             1111222333333


Q ss_pred             -ceEEEeeecCCCChHHHHHHHH
Q 018454          274 -SLAFHASINKSFGKGSLLSVLR  295 (355)
Q Consensus       274 -~~~f~vSa~~~~Gi~~Ll~~L~  295 (355)
                       ...+.+||+++.|+++|++.+.
T Consensus       148 ~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         148 ACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHH
Confidence             3678899999999999988653

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.04  E-value=1.8e-05  Score=74.23  Aligned_cols=90  Identities=17%  Similarity=0.182  Sum_probs=59.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCCh-------------hhHHHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~-------------~~~~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|.|+.++.....  ..+...+....++.|+|||.||+||...             .+...-...+.+...
T Consensus        81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~  160 (232)
T cd04174          81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG  160 (232)
T ss_pred             HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence            5789999999999998764422  2333444443457899999999998531             111122233334444


Q ss_pred             c-eEEEeeecCCC-ChHHHHHHHHHHH
Q 018454          274 S-LAFHASINKSF-GKGSLLSVLRQFA  298 (355)
Q Consensus       274 ~-~~f~vSa~~~~-Gi~~Ll~~L~q~~  298 (355)
                      . ..|.+||++|. |+++++..+...+
T Consensus       161 ~~~~~EtSAktg~~~V~e~F~~~~~~~  187 (232)
T cd04174         161 AEVYLECSAFTSEKSIHSIFRSASLLC  187 (232)
T ss_pred             CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence            4 46789999997 8999998775543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00876 Ras Ras family

Probab=98.04  E-value=2.7e-05  Score=66.28  Aligned_cols=90  Identities=18%  Similarity=0.196  Sum_probs=59.1

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc--CCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceEEEeeec
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC--KHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~--~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ...+..+|++++|+|..++..... ..+...+....  ...|+++|+||+|+.+. .........+........+.+|++
T Consensus        65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  144 (160)
T cd00876          65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAK  144 (160)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccC
Confidence            346778999999999987642211 12222222211  36899999999999863 222233333433333556889999


Q ss_pred             CCCChHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQ  296 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q  296 (355)
                      ++.|+.++++.|.+
T Consensus       145 ~~~~i~~l~~~l~~  158 (160)
T cd00876         145 DNINIDEVFKLLVR  158 (160)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999998864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.03  E-value=2e-05  Score=64.59  Aligned_cols=89  Identities=20%  Similarity=0.119  Sum_probs=59.2

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHH--HHH-HhhcCCCcEEEEEeccCCCChhhHHHH--HHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLE--RHL-KEHCKHKHMILLLNKCDLVPAWATKGW--LRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~--~~L-~~~~~~k~vILVlNK~DLvp~~~~~~w--~~~l~~~~p~~~f~vSa  281 (355)
                      ...+..+|++++|+|+.++.........  ..+ .....++|+++|+||+|+.+.......  ............+.+|+
T Consensus        63 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  142 (157)
T cd00882          63 RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSA  142 (157)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEec
Confidence            4567899999999999987543222111  111 123367999999999999875443332  12222233456788899


Q ss_pred             cCCCChHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLR  295 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~  295 (355)
                      .++.|+.++++.|.
T Consensus       143 ~~~~~i~~~~~~l~  156 (157)
T cd00882         143 KTGENVEELFEELA  156 (157)
T ss_pred             CCCCChHHHHHHHh
Confidence            99999999998874

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.03  E-value=1.5e-05  Score=73.74  Aligned_cols=89  Identities=11%  Similarity=0.100  Sum_probs=59.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK  287 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi  287 (355)
                      ....+|.+|+|+|..++.+... ..+...+.....+.|++||+||+||........-. .+........|.+||+++.|+
T Consensus        82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i  160 (219)
T PLN03071         82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNF  160 (219)
T ss_pred             HcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCCH
Confidence            4678999999999998753211 12223333334678999999999996433211111 233334556788999999999


Q ss_pred             HHHHHHHHHHH
Q 018454          288 GSLLSVLRQFA  298 (355)
Q Consensus       288 ~~Ll~~L~q~~  298 (355)
                      +++++.|.+.+
T Consensus       161 ~~~f~~l~~~~  171 (219)
T PLN03071        161 EKPFLYLARKL  171 (219)
T ss_pred             HHHHHHHHHHH
Confidence            99998887554

>cd04103 Centaurin_gamma Centaurin gamma

Probab=98.03  E-value=1.7e-05  Score=69.41  Aligned_cols=88  Identities=11%  Similarity=0.092  Sum_probs=58.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCC---hhhHHHHHHHHhhhC-CceEEEeee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVP---AWATKGWLRVLSKEY-PSLAFHASI  281 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp---~~~~~~w~~~l~~~~-p~~~f~vSa  281 (355)
                      ....+|++++|.|..++..... ..+...+...  ..+.|+++|.||+||..   ..........+.+.. ....|.+||
T Consensus        62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  141 (158)
T cd04103          62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA  141 (158)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence            3467899999999998764332 2233333322  14579999999999842   223333334444333 466788999


Q ss_pred             cCCCChHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQ  296 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q  296 (355)
                      +++.|++++++.+.+
T Consensus       142 k~~~~i~~~f~~~~~  156 (158)
T cd04103         142 TYGLNVERVFQEAAQ  156 (158)
T ss_pred             CCCCCHHHHHHHHHh
Confidence            999999999988753

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04134 Rho3 Rho3 subfamily

Probab=98.03  E-value=1.9e-05  Score=70.75  Aligned_cols=90  Identities=18%  Similarity=0.251  Sum_probs=58.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhHHH-------------HHHHHhhhC-
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKG-------------WLRVLSKEY-  272 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~-------------w~~~l~~~~-  272 (355)
                      ....+|++|+|.|..++.+....  .+...+.....+.|+|+|+||+||........             -...+.... 
T Consensus        68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  147 (189)
T cd04134          68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN  147 (189)
T ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            45789999999999887643221  23333443345789999999999965321110             011111122 


Q ss_pred             CceEEEeeecCCCChHHHHHHHHHHH
Q 018454          273 PSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       273 p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      ....|.+||+++.|++++++.|.+.+
T Consensus       148 ~~~~~e~SAk~~~~v~e~f~~l~~~~  173 (189)
T cd04134         148 ALRYLECSAKLNRGVNEAFTEAARVA  173 (189)
T ss_pred             CCEEEEccCCcCCCHHHHHHHHHHHH
Confidence            24567899999999999999887665

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.02  E-value=2.7e-05  Score=68.84  Aligned_cols=90  Identities=14%  Similarity=0.120  Sum_probs=59.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|.+|+|+|+.++.+... ..+...+..  ...+.|+++|+||+||.... ....-...+.+......+.+||+++
T Consensus        70 ~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~  149 (172)
T cd04141          70 YMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALR  149 (172)
T ss_pred             HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCC
Confidence            4668999999999998765332 122233333  22578999999999985422 1111122233334556778999999


Q ss_pred             CChHHHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQFA  298 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~  298 (355)
                      .|++++++.|.+.+
T Consensus       150 ~~v~~~f~~l~~~~  163 (172)
T cd04141         150 HYIDDAFHGLVREI  163 (172)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999886543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.02  E-value=1.3e-05  Score=71.48  Aligned_cols=89  Identities=24%  Similarity=0.284  Sum_probs=60.1

Q ss_pred             hhcCCCEEEEEecCCCCCC--CcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh-----hhCCceEEEee
Q 018454          209 VIDSSDVVVQVLDARDPQG--TRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS-----KEYPSLAFHAS  280 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~--s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~-----~~~p~~~f~vS  280 (355)
                      .+..+|.||+|+|+.|+..  ..-..+...+.. ...+.|+++++||+|+............+.     ...+..++.+|
T Consensus        78 y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~s  157 (175)
T PF00025_consen   78 YFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCS  157 (175)
T ss_dssp             GHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEB
T ss_pred             eccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeee
Confidence            5678899999999998642  111223333332 235799999999999865433333333332     12456678899


Q ss_pred             ecCCCChHHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQF  297 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~  297 (355)
                      +.+|.|+.+.+++|.+.
T Consensus       158 a~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  158 AKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             TTTTBTHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHhc
Confidence            99999999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01875 RhoG RhoG subfamily

Probab=98.02  E-value=2e-05  Score=71.02  Aligned_cols=90  Identities=14%  Similarity=0.117  Sum_probs=59.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhh-------------HHHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------~~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|.|+.++.+....  .+...+.....+.|++||.||+||.....             .......+.....
T Consensus        71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~  150 (191)
T cd01875          71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH  150 (191)
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            46789999999999987643221  12222333335789999999999954311             1111222333333


Q ss_pred             -ceEEEeeecCCCChHHHHHHHHHHH
Q 018454          274 -SLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       274 -~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                       ...|.+||++|.|++++++.|.+.+
T Consensus       151 ~~~~~e~SAk~g~~v~e~f~~l~~~~  176 (191)
T cd01875         151 AVKYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence             4577899999999999999887654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04144 Ras2 Ras2 subfamily

Probab=98.02  E-value=2.9e-05  Score=69.59  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=59.5

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh----cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH----CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~----~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ..+..+|++|+|+|+.++.+... ..+...+...    ..+.|+|+|+||+||..... ...-...+...+....|.+||
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  145 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASA  145 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecC
Confidence            35778999999999987653211 1222223221    24689999999999964221 111122233334455788999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +++.|++++++.|.+.+.
T Consensus       146 k~~~~v~~l~~~l~~~l~  163 (190)
T cd04144         146 KTNVNVERAFYTLVRALR  163 (190)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999998876654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.01  E-value=3.6e-05  Score=71.10  Aligned_cols=87  Identities=20%  Similarity=0.061  Sum_probs=53.7

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCC-------CcchHHHHHHHhhcCCCcEEEEEeccCCCC----hhhHHHHHHH--
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQG-------TRCHHLERHLKEHCKHKHMILLLNKCDLVP----AWATKGWLRV--  267 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~-------s~~~~l~~~L~~~~~~k~vILVlNK~DLvp----~~~~~~w~~~--  267 (355)
                      .++..+...+..+|++|+|+|+.++..       ........++. ....+|+|+|+||+|+.+    ........+.  
T Consensus        89 ~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~  167 (219)
T cd01883          89 DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELS  167 (219)
T ss_pred             HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCCCeEEEEEEccccccccccHHHHHHHHHHHH
Confidence            455667778889999999999998521       11112222222 223368899999999983    2222222322  


Q ss_pred             --Hhhh-C---CceEEEeeecCCCChH
Q 018454          268 --LSKE-Y---PSLAFHASINKSFGKG  288 (355)
Q Consensus       268 --l~~~-~---p~~~f~vSa~~~~Gi~  288 (355)
                        +... +   ...++.+||.+|.|+.
T Consensus       168 ~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         168 PFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHcCCCcCCceEEEeecCcCCCCC
Confidence              2222 1   2457889999999975

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04131 Rnd Rnd subfamily

Probab=98.01  E-value=2.3e-05  Score=70.07  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCCh-------------hhHHHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~-------------~~~~~w~~~l~~~~p  273 (355)
                      ....+|++|+|.|..++.+...  ..+...+....++.|+|||.||+||.+.             .+..+-...+.+...
T Consensus        69 ~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~  148 (178)
T cd04131          69 CYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG  148 (178)
T ss_pred             hcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence            5688999999999988764322  1233334444467899999999999541             111222333444445


Q ss_pred             c-eEEEeeecCCCC-hHHHHHHHHHH
Q 018454          274 S-LAFHASINKSFG-KGSLLSVLRQF  297 (355)
Q Consensus       274 ~-~~f~vSa~~~~G-i~~Ll~~L~q~  297 (355)
                      . ..|.+||+++.+ +++++..+...
T Consensus       149 ~~~~~E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         149 AEIYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             CCEEEECccCcCCcCHHHHHHHHHHH
Confidence            3 467899999995 99999877653

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04135 Tc10 TC10 subfamily

Probab=98.00  E-value=2.1e-05  Score=68.56  Aligned_cols=88  Identities=17%  Similarity=0.071  Sum_probs=57.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhH-------------HHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-------------KGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-------------~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|..++......  .+...+.....+.|+++|+||+||.+....             ......+.+...
T Consensus        68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  147 (174)
T cd04135          68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG  147 (174)
T ss_pred             cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            46788999999999887543221  233334333468999999999998653211             111122222233


Q ss_pred             -ceEEEeeecCCCChHHHHHHHHH
Q 018454          274 -SLAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       274 -~~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                       ...|.+||+++.|++++++.+.+
T Consensus       148 ~~~~~e~Sa~~~~gi~~~f~~~~~  171 (174)
T cd04135         148 AHCYVECSALTQKGLKTVFDEAIL  171 (174)
T ss_pred             CCEEEEecCCcCCCHHHHHHHHHH
Confidence             34678999999999999987754

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04148 RGK RGK subfamily

Probab=98.00  E-value=2.3e-05  Score=72.55  Aligned_cols=90  Identities=20%  Similarity=0.213  Sum_probs=60.9

Q ss_pred             CCCEEEEEecCCCCCCCc-chHHHHHHHhh--cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454          212 SSDVVVQVLDARDPQGTR-CHHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSFGK  287 (355)
Q Consensus       212 ~sDvVL~VvDardp~~s~-~~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~Gi  287 (355)
                      .+|++|+|+|+.++.... ...+...+...  ..+.|+|+|+||+||.+... .......+...+....+.+||+++.|+
T Consensus        72 ~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv  151 (221)
T cd04148          72 QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNV  151 (221)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence            899999999999875322 12233333332  24689999999999976432 112222333344555678899999999


Q ss_pred             HHHHHHHHHHHhhh
Q 018454          288 GSLLSVLRQFARLK  301 (355)
Q Consensus       288 ~~Ll~~L~q~~~~~  301 (355)
                      ++|++.|.+.+.+.
T Consensus       152 ~~l~~~l~~~~~~~  165 (221)
T cd04148         152 DELLEGIVRQIRLR  165 (221)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999988777543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04125 RabA_like RabA-like subfamily

Probab=98.00  E-value=4.6e-05  Score=67.93  Aligned_cols=91  Identities=15%  Similarity=0.158  Sum_probs=59.9

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ...+..+|++|+|+|+.++..  ...+..++..   . ..+.|+|+|+||+|+..... .......+........+.+|+
T Consensus        67 ~~~~~~~d~iilv~d~~~~~s--~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  144 (188)
T cd04125          67 NSYYRGAHGYLLVYDVTDQES--FENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSA  144 (188)
T ss_pred             HHHccCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeC
Confidence            446789999999999988643  2233334332   1 13578999999999974321 111222233333445788999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +++.|++++++.|.+.+.
T Consensus       145 ~~~~~i~~~f~~l~~~~~  162 (188)
T cd04125         145 KQSINVEEAFILLVKLII  162 (188)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999998776654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=97.99  E-value=1.6e-05  Score=75.46  Aligned_cols=38  Identities=21%  Similarity=0.168  Sum_probs=34.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ...++|.|+|.+|||||||||+|++.....+++.+++|
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T   66 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSET   66 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCce
Confidence            46789999999999999999999999999999887766

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd04126 Rab20 Rab20 subfamily

Probab=97.99  E-value=2.7e-05  Score=72.47  Aligned_cols=89  Identities=17%  Similarity=0.235  Sum_probs=57.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCCh------------------------hh
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPA------------------------WA  260 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~------------------------~~  260 (355)
                      .+..+|++|+|+|+.++....  .+..++   .. ...+.|+|||.||+||...                        +.
T Consensus        64 ~~~~ad~~IlV~Dvt~~~Sf~--~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e  141 (220)
T cd04126          64 YCRGAAAVILTYDVSNVQSLE--ELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED  141 (220)
T ss_pred             HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence            467899999999999875332  222222   21 2246789999999999751                        11


Q ss_pred             HHHHHHHHhhh----------CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          261 TKGWLRVLSKE----------YPSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       261 ~~~w~~~l~~~----------~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ...|.+.+...          .....|.+||++|.|+++++..|.+...
T Consensus       142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             HHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            22333322110          0134678999999999999988765543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PTZ00369 Ras-like protein; Provisional

Probab=97.98  E-value=2.8e-05  Score=69.60  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCc-chHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|++|+|+|+.++.... ...+...+..  ...+.|+++|+||+|+..... .......+.+.+....|.+||+++
T Consensus        73 ~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~  152 (189)
T PTZ00369         73 YMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQR  152 (189)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCC
Confidence            567899999999998875311 1122222222  124679999999999864321 111222222333445788999999


Q ss_pred             CChHHHHHHHHHHHh
Q 018454          285 FGKGSLLSVLRQFAR  299 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~  299 (355)
                      .|++++++.|.+.+.
T Consensus       153 ~gi~~~~~~l~~~l~  167 (189)
T PTZ00369        153 VNVDEAFYELVREIR  167 (189)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999998865543

>cd04111 Rab39 Rab39 subfamily

Probab=97.97  E-value=3.2e-05  Score=70.99  Aligned_cols=92  Identities=22%  Similarity=0.210  Sum_probs=61.7

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-c-CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-C-KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~-~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ..+..+|++|+|+|+.++...  ..+..++..   . . ...++++|.||+||.... ....-...+.+..+...+.+|+
T Consensus        71 ~~~~~~d~iilv~D~~~~~Sf--~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  148 (211)
T cd04111          71 SYYRNSVGVLLVFDITNRESF--EHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSA  148 (211)
T ss_pred             HHhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeC
Confidence            467889999999999987432  233333332   1 1 235678999999997532 1222233444445566788999


Q ss_pred             cCCCChHHHHHHHHHHHhhh
Q 018454          282 NKSFGKGSLLSVLRQFARLK  301 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~~~  301 (355)
                      +++.|++++++.|.+.+...
T Consensus       149 k~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         149 RTGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999988766544

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=97.97  E-value=4.1e-05  Score=70.10  Aligned_cols=87  Identities=16%  Similarity=0.042  Sum_probs=53.7

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHHHHHHH----hhhC--C
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVL----SKEY--P  273 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~w~~~l----~~~~--p  273 (355)
                      +...+...+..+|++|+|+|+.++.......+..++.. ....++|+|+||+|+...  .........+    ....  +
T Consensus        90 ~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~  168 (208)
T cd04166          90 YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIED  168 (208)
T ss_pred             HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            44456667889999999999998765444444444433 122457889999999752  1111112222    2211  2


Q ss_pred             ceEEEeeecCCCChHH
Q 018454          274 SLAFHASINKSFGKGS  289 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~  289 (355)
                      ..++.+||+++.|+.+
T Consensus       169 ~~ii~iSA~~g~ni~~  184 (208)
T cd04166         169 ITFIPISALDGDNVVS  184 (208)
T ss_pred             ceEEEEeCCCCCCCcc
Confidence            3478899999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=97.97  E-value=6.2e-06  Score=81.27  Aligned_cols=44  Identities=23%  Similarity=0.257  Sum_probs=36.6

Q ss_pred             eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      -.|+|||+||||||||||+|.+.+ ..++++|+||...++..+.|
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~  201 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRV  201 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEe
Confidence            568999999999999999999765 56899999997666666554

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.96  E-value=5e-05  Score=74.57  Aligned_cols=97  Identities=21%  Similarity=0.245  Sum_probs=68.0

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcc----hHHHHHHHh---hcCCCcEEEEEeccCC-CChhhHHHHHHHHhhhCCce
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRC----HHLERHLKE---HCKHKHMILLLNKCDL-VPAWATKGWLRVLSKEYPSL  275 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~----~~l~~~L~~---~~~~k~vILVlNK~DL-vp~~~~~~w~~~l~~~~p~~  275 (355)
                      -+..+.|+++-+++||+|+.......+    ..|...|..   ...+||.++|+||+|+ .+.+..+...+++.+.....
T Consensus       229 ~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~  308 (369)
T COG0536         229 LRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWE  308 (369)
T ss_pred             HHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCC
Confidence            456677999999999999974332111    122222322   2357999999999994 55666777777777665544


Q ss_pred             EEE-eeecCCCChHHHHHHHHHHHhh
Q 018454          276 AFH-ASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       276 ~f~-vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      .+. +|+.++.|+++|+..+.+++..
T Consensus       309 ~~~~ISa~t~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         309 VFYLISALTREGLDELLRALAELLEE  334 (369)
T ss_pred             cceeeehhcccCHHHHHHHHHHHHHH
Confidence            333 8999999999999988877653

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=97.95  E-value=2.9e-05  Score=69.83  Aligned_cols=89  Identities=18%  Similarity=0.184  Sum_probs=59.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCCh-------------hhHHHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~-------------~~~~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|.|..++.+...  ..+...+....++.|+|||.||+||...             .+...-...+.+...
T Consensus        73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~  152 (182)
T cd04172          73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG  152 (182)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence            5788999999999988754322  1233334444457899999999998531             111122233444444


Q ss_pred             c-eEEEeeecCCCC-hHHHHHHHHHH
Q 018454          274 S-LAFHASINKSFG-KGSLLSVLRQF  297 (355)
Q Consensus       274 ~-~~f~vSa~~~~G-i~~Ll~~L~q~  297 (355)
                      . ..+.+||+++.| +.+++..+.+.
T Consensus       153 ~~~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         153 AATYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence            3 567899999998 99999877653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.95  E-value=5.5e-05  Score=66.38  Aligned_cols=87  Identities=18%  Similarity=0.102  Sum_probs=56.8

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h--hcCCCcEEEEEeccCCCChhhHHHHHHHHh-----h--hCCc
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E--HCKHKHMILLLNKCDLVPAWATKGWLRVLS-----K--EYPS  274 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~-----~--~~p~  274 (355)
                      ...+..+|++|+|+|+.++...  ..+..++.   .  ...++|+++|+||+|+..........+.+.     +  ..+.
T Consensus        61 ~~~~~~a~~ii~V~D~s~~~s~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~  138 (167)
T cd04161          61 VNYYAEAHGLVFVVDSSDDDRV--QEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLC  138 (167)
T ss_pred             HHHHcCCCEEEEEEECCchhHH--HHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceE
Confidence            3467899999999999987521  12222222   1  124789999999999865432333333321     1  1244


Q ss_pred             eEEEeeecCC------CChHHHHHHHH
Q 018454          275 LAFHASINKS------FGKGSLLSVLR  295 (355)
Q Consensus       275 ~~f~vSa~~~------~Gi~~Ll~~L~  295 (355)
                      .++.+||++|      .|+.+.+++|.
T Consensus       139 ~~~~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         139 HIEPCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             EEEEeEceeCCCCccccCHHHHHHHHh
Confidence            5667899998      78999998885

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=97.94  E-value=2e-05  Score=76.97  Aligned_cols=52  Identities=21%  Similarity=0.286  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ..|++.|..+-.  .+....+|.++|.+||||||++|+|++..++.+++.+++|
T Consensus        22 ~~l~~~l~~l~~--~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t   73 (313)
T TIGR00991        22 TKLLELLGKLKE--EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEG   73 (313)
T ss_pred             HHHHHHHHhccc--ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc
Confidence            345555554433  2346789999999999999999999999998899888776

>cd04155 Arl3 Arl3 subfamily

Probab=97.94  E-value=4.5e-05  Score=66.45  Aligned_cols=89  Identities=17%  Similarity=0.141  Sum_probs=56.3

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEe
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHA  279 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~v  279 (355)
                      ...+..+|++++|+|+.++....  ...+...+.. ...+.|+++|+||+|+..........+.+.-..    ...++.+
T Consensus        76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  155 (173)
T cd04155          76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQAC  155 (173)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEe
Confidence            34578999999999998753211  1111122211 124689999999999976433333333332111    1235678


Q ss_pred             eecCCCChHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLR  295 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~  295 (355)
                      |++++.|++++++.|.
T Consensus       156 Sa~~~~gi~~~~~~l~  171 (173)
T cd04155         156 SAKTGEGLQEGMNWVC  171 (173)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            9999999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK12736 elongation factor Tu; Reviewed

Probab=97.93  E-value=7.9e-05  Score=75.08  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=67.6

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhH-H----HHHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWAT-K----GWLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~-~----~w~~~l~  269 (355)
                      +|| .++.......+..+|++|+|+|+.+...........++..  .++| +|+|+||+|+++.... +    +....+.
T Consensus        83 PGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~  159 (394)
T PRK12736         83 PGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            454 3556677777889999999999998765555555555554  4677 6789999999854322 2    2222222


Q ss_pred             hh-C---CceEEEeeecCCC--------ChHHHHHHHHHHHh
Q 018454          270 KE-Y---PSLAFHASINKSF--------GKGSLLSVLRQFAR  299 (355)
Q Consensus       270 ~~-~---p~~~f~vSa~~~~--------Gi~~Ll~~L~q~~~  299 (355)
                      .. +   ...++.+|+.++.        ++.+|++.|.++++
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            22 1   1356788999873        57888988887765

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.92  E-value=2e-05  Score=65.65  Aligned_cols=89  Identities=18%  Similarity=0.152  Sum_probs=56.0

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      +++...+...|++++|+|+.++.......+.....   .+.|+++|+||+|+............+........+.+|+.+
T Consensus        72 ~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  148 (161)
T TIGR00231        72 RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAET  148 (161)
T ss_pred             hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCC
Confidence            34444556666666666665543222222222221   278999999999998754333344444443334478889999


Q ss_pred             CCChHHHHHHHH
Q 018454          284 SFGKGSLLSVLR  295 (355)
Q Consensus       284 ~~Gi~~Ll~~L~  295 (355)
                      +.|+.++++.|+
T Consensus       149 ~~gv~~~~~~l~  160 (161)
T TIGR00231       149 GKNIDSAFKIVE  160 (161)
T ss_pred             CCCHHHHHHHhh
Confidence            999999998875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PLN03118 Rab family protein; Provisional

Probab=97.92  E-value=6.7e-05  Score=68.44  Aligned_cols=93  Identities=13%  Similarity=0.010  Sum_probs=60.4

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcch--HHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCH--HLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~--~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ...+..+|++|+|+|+.++......  .+...+..  ...+.|+++|+||+||.+... .......+........|.+|+
T Consensus        80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SA  159 (211)
T PLN03118         80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSA  159 (211)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeC
Confidence            3457789999999999886432211  11122221  113568999999999975422 122223333344556788999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +++.|++++++.|.+.+.
T Consensus       160 k~~~~v~~l~~~l~~~~~  177 (211)
T PLN03118        160 KTRENVEQCFEELALKIM  177 (211)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999998876654

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.91  E-value=4.1e-05  Score=74.50  Aligned_cols=94  Identities=22%  Similarity=0.234  Sum_probs=61.8

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCC---C-cchHHHHHHH---hhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQG---T-RCHHLERHLK---EHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-  273 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~---s-~~~~l~~~L~---~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-  273 (355)
                      +--+..+.|+.|+++++|||+..+..   . ....|...+.   +....+|.++|+||+|+...  .+..++.+.+..+ 
T Consensus       264 lG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~lq~  341 (366)
T KOG1489|consen  264 LGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA--EKNLLSSLAKRLQN  341 (366)
T ss_pred             ccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH--HHHHHHHHHHHcCC
Confidence            33466778999999999999987732   1 1111111111   12357899999999998522  2333344433332 


Q ss_pred             ceEEEeeecCCCChHHHHHHHHHH
Q 018454          274 SLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      ..+|.+||+++.|+++|++.|++.
T Consensus       342 ~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  342 PHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             CcEEEeeeccccchHHHHHHHhhc
Confidence            247889999999999999998754

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=97.91  E-value=1.5e-05  Score=71.00  Aligned_cols=39  Identities=28%  Similarity=0.331  Sum_probs=34.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCeeE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVWY  342 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT~  342 (355)
                      ....+|++||.+|||||||||+|.+.. .+.+++.||+|+
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~   61 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQ   61 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcee
Confidence            355789999999999999999999875 788999999984

>cd04116 Rab9 Rab9 subfamily

Probab=97.90  E-value=9.9e-05  Score=64.16  Aligned_cols=89  Identities=12%  Similarity=0.078  Sum_probs=55.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-----cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-ceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-SLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-----~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-~~~f~vS  280 (355)
                      ..+..+|++|+|+|..++..... ..+...+...     ..+.|+++|+||+|+........-...+.+.+. ...+.+|
T Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  152 (170)
T cd04116          73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETS  152 (170)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEE
Confidence            35688999999999887643211 1122212111     135799999999999643322111222222232 4567899


Q ss_pred             ecCCCChHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQ  296 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q  296 (355)
                      |+++.|+.++++.|.+
T Consensus       153 a~~~~~v~~~~~~~~~  168 (170)
T cd04116         153 AKDATNVAAAFEEAVR  168 (170)
T ss_pred             CCCCCCHHHHHHHHHh
Confidence            9999999999988754

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PRK00049 elongation factor Tu; Reviewed

Probab=97.89  E-value=8.4e-05  Score=74.97  Aligned_cols=101  Identities=18%  Similarity=0.147  Sum_probs=67.9

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEE-EEEeccCCCChhh-HHHHHHH----Hh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI-LLLNKCDLVPAWA-TKGWLRV----LS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vI-LVlNK~DLvp~~~-~~~w~~~----l~  269 (355)
                      +|+ .++...+...+..+|++++|+|+.++.......+..++..  .++|.+ +++||+|+++... .+.....    +.
T Consensus        83 PG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~  159 (396)
T PRK00049         83 PGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             CCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence            455 4677788888999999999999998766555555566654  467876 5899999986432 2222222    22


Q ss_pred             hh-C---CceEEEeeecCCC----------ChHHHHHHHHHHHh
Q 018454          270 KE-Y---PSLAFHASINKSF----------GKGSLLSVLRQFAR  299 (355)
Q Consensus       270 ~~-~---p~~~f~vSa~~~~----------Gi~~Ll~~L~q~~~  299 (355)
                      .. +   ...++.+|+.++.          |+..|++.|.++.+
T Consensus       160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            21 1   1345678988764          56788888887653

>CHL00071 tufA elongation factor Tu

Probab=97.89  E-value=8.5e-05  Score=75.20  Aligned_cols=100  Identities=17%  Similarity=0.126  Sum_probs=66.5

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhH-H----HHHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWAT-K----GWLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~-~----~w~~~l~  269 (355)
                      +|| .+++..+...+..+|++++|+|+.+........+..++..  .++| +|+|+||+|+++.... +    +....+.
T Consensus        83 PGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~  159 (409)
T CHL00071         83 PGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLS  159 (409)
T ss_pred             CCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence            444 4677778888999999999999998766555555555554  4677 7789999999874432 2    2222232


Q ss_pred             hh-CC---ceEEEeeecCCC------------------ChHHHHHHHHHHH
Q 018454          270 KE-YP---SLAFHASINKSF------------------GKGSLLSVLRQFA  298 (355)
Q Consensus       270 ~~-~p---~~~f~vSa~~~~------------------Gi~~Ll~~L~q~~  298 (355)
                      .. ++   ..++++|+.+++                  ++..|++.|..+.
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~  210 (409)
T CHL00071        160 KYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI  210 (409)
T ss_pred             HhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence            21 11   345677888775                  3467777777664

>PLN03110 Rab GTPase; Provisional

Probab=97.89  E-value=8.4e-05  Score=68.41  Aligned_cols=92  Identities=13%  Similarity=0.039  Sum_probs=63.1

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEee
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vS  280 (355)
                      ....+..+|.+|+|+|+.++...  ..+..++.   .. ..+.|+++|+||+||..... .......+...+....+.+|
T Consensus        78 ~~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~S  155 (216)
T PLN03110         78 TSAYYRGAVGALLVYDITKRQTF--DNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETS  155 (216)
T ss_pred             HHHHhCCCCEEEEEEECCChHHH--HHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEe
Confidence            34467889999999999886532  23444432   21 24689999999999964322 22334444444556678899


Q ss_pred             ecCCCChHHHHHHHHHHHh
Q 018454          281 INKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~  299 (355)
                      |+++.|++++++.|...+.
T Consensus       156 A~~g~~v~~lf~~l~~~i~  174 (216)
T PLN03110        156 ALEATNVEKAFQTILLEIY  174 (216)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999998865543

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.88  E-value=1.3e-05  Score=71.19  Aligned_cols=40  Identities=28%  Similarity=0.317  Sum_probs=34.9

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCeeEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVWYW  343 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT~~  343 (355)
                      .+...|+++|.+|||||||||+|.+.. ...+++.||+|.+
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~   56 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQL   56 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceE
Confidence            456789999999999999999999875 6778999999843

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=97.87  E-value=3e-05  Score=67.94  Aligned_cols=86  Identities=20%  Similarity=0.223  Sum_probs=53.9

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---hcCCCcEEEEEeccCCCChhhHHHHHHH-----HhhhCCceEEEe
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWLRV-----LSKEYPSLAFHA  279 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~~~w~~~-----l~~~~p~~~f~v  279 (355)
                      ..+..+|++|+|+|+.++...  ..+..++..   ...+.|+++|+||+|+............     +........|.+
T Consensus        63 ~~~~~ad~ii~V~D~t~~~s~--~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  140 (164)
T cd04162          63 RYLSGSQGLIFVVDSADSERL--PLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGT  140 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEe
Confidence            367899999999999887521  122222222   2367999999999998654322222222     222234445666


Q ss_pred             eecC------CCChHHHHHHHH
Q 018454          280 SINK------SFGKGSLLSVLR  295 (355)
Q Consensus       280 Sa~~------~~Gi~~Ll~~L~  295 (355)
                      ||++      ++|+.++++.|.
T Consensus       141 Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         141 SLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             eecCCCChhHHHHHHHHHHHHh
Confidence            6666      889998887764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04117 Rab15 Rab15 subfamily

Probab=97.87  E-value=9.8e-05  Score=64.23  Aligned_cols=87  Identities=18%  Similarity=0.150  Sum_probs=59.0

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc-CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC-KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~-~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .....+|++++|+|..++...  ..+..++.   ... .+.|+++|.||+||.... ........+.+......+.+||+
T Consensus        68 ~~~~~~~~~i~v~d~~~~~sf--~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~  145 (161)
T cd04117          68 QYYRRAQGIFLVYDISSERSY--QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSAC  145 (161)
T ss_pred             HHhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence            356789999999999886432  23334333   222 357999999999996432 22233334444444556889999


Q ss_pred             CCCChHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQ  296 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q  296 (355)
                      ++.|+++++..|.+
T Consensus       146 ~~~~v~~~f~~l~~  159 (161)
T cd04117         146 TNSNIKESFTRLTE  159 (161)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999988864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=97.87  E-value=6e-05  Score=79.84  Aligned_cols=85  Identities=25%  Similarity=0.177  Sum_probs=60.1

Q ss_pred             hcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHH
Q 018454          210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGS  289 (355)
Q Consensus       210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~  289 (355)
                      ...+|+|++|+|+.+..  +...+...+.+  .++|+++|+||+|+........-.+.+.+.....++.+||+++.|+++
T Consensus        70 ~~~aDvvI~VvDat~le--r~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~e  145 (591)
T TIGR00437        70 NEKPDLVVNVVDASNLE--RNLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIER  145 (591)
T ss_pred             hcCCCEEEEEecCCcch--hhHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHH
Confidence            45789999999998743  22222223333  579999999999996543322223455555556678899999999999


Q ss_pred             HHHHHHHHH
Q 018454          290 LLSVLRQFA  298 (355)
Q Consensus       290 Ll~~L~q~~  298 (355)
                      |++.+.+..
T Consensus       146 L~~~i~~~~  154 (591)
T TIGR00437       146 LKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHh
Confidence            999987653

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=97.87  E-value=7.4e-05  Score=75.81  Aligned_cols=88  Identities=15%  Similarity=0.033  Sum_probs=54.2

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCC--CCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhH----HHHHHHHhhh-
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARD--PQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WAT----KGWLRVLSKE-  271 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDard--p~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~----~~w~~~l~~~-  271 (355)
                      +++..+...+..+|++|+|+|+.+  ...........++.. ....++++|+||+|++..  ...    ++..+.+... 
T Consensus        96 ~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g  174 (425)
T PRK12317         96 DFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVG  174 (425)
T ss_pred             cchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhC
Confidence            455555666789999999999998  433333333333332 122468999999999752  111    1222222221 


Q ss_pred             C---CceEEEeeecCCCChHH
Q 018454          272 Y---PSLAFHASINKSFGKGS  289 (355)
Q Consensus       272 ~---p~~~f~vSa~~~~Gi~~  289 (355)
                      +   ...++.+||.+|.|+++
T Consensus       175 ~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        175 YKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             CCcCcceEEEeecccCCCccc
Confidence            1   24578899999999975

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.86  E-value=2.9e-05  Score=75.28  Aligned_cols=97  Identities=20%  Similarity=0.105  Sum_probs=69.4

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh-----------------HHHH
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-----------------TKGW  264 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-----------------~~~w  264 (355)
                      .....+..+..+|+|+.|+|+.++-....+.+.+-+.+ +.+.|-|+|+||+|.++...                 .-+|
T Consensus       145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~-ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEE-YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHH-HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence            34567788999999999999998666666666665553 46899999999999875321                 1234


Q ss_pred             HHHHhhhC-------------CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          265 LRVLSKEY-------------PSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       265 ~~~l~~~~-------------p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      .+.+...-             -..+|.+|+++|.|+++|.++|-..++
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            44332210             123789999999999999998866554

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=97.85  E-value=8.7e-05  Score=78.65  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=70.0

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh---hhHHHHHHHHhh--
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA---WATKGWLRVLSK--  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~---~~~~~w~~~l~~--  270 (355)
                      +|| .++..++...+..+|.+|+|+|+.+........+...+..  .+.|+|+|+||+|+...   ....+..+.+..  
T Consensus        72 PGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g  148 (594)
T TIGR01394        72 PGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELG  148 (594)
T ss_pred             CCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhc
Confidence            454 3455677788999999999999987654444444444443  57899999999998642   223333343321  


Q ss_pred             ----hCCceEEEeeecCCC----------ChHHHHHHHHHHHhhh
Q 018454          271 ----EYPSLAFHASINKSF----------GKGSLLSVLRQFARLK  301 (355)
Q Consensus       271 ----~~p~~~f~vSa~~~~----------Gi~~Ll~~L~q~~~~~  301 (355)
                          .....++.+|+.+++          |+..|++.|.++++..
T Consensus       149 ~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       149 ADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             cccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence                112346778999996          7999999998887643

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.85  E-value=0.00013  Score=63.85  Aligned_cols=89  Identities=17%  Similarity=0.159  Sum_probs=56.9

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      ..+..+|++|+|+|+.++..... ..+...+...  ..+.|+|+|+||+||.... ........+...+....+.+||++
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  150 (170)
T cd04115          71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD  150 (170)
T ss_pred             HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence            34678999999999988754322 1222222221  2468999999999986432 222333444444445577889998


Q ss_pred             ---CCChHHHHHHHHH
Q 018454          284 ---SFGKGSLLSVLRQ  296 (355)
Q Consensus       284 ---~~Gi~~Ll~~L~q  296 (355)
                         +.++++++..|.+
T Consensus       151 ~~~~~~i~~~f~~l~~  166 (170)
T cd04115         151 PSENDHVEAIFMTLAH  166 (170)
T ss_pred             CcCCCCHHHHHHHHHH
Confidence               7778887776654

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=97.83  E-value=9e-05  Score=75.92  Aligned_cols=87  Identities=26%  Similarity=0.267  Sum_probs=58.0

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      ......+..+|++|+|+|+.++...... +...+..  .++|+|+|+||+||.... ...    +.......++.+|+++
T Consensus       274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~--~~~piIlV~NK~Dl~~~~-~~~----~~~~~~~~~~~vSak~  345 (442)
T TIGR00450       274 EKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK--SKKPFILVLNKIDLKINS-LEF----FVSSKVLNSSNLSAKQ  345 (442)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh--CCCCEEEEEECccCCCcc-hhh----hhhhcCCceEEEEEec
Confidence            4456788999999999999987643332 3333322  478999999999997542 111    2222223356789987


Q ss_pred             CCChHHHHHHHHHHHh
Q 018454          284 SFGKGSLLSVLRQFAR  299 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~  299 (355)
                       .|++++++.|.+...
T Consensus       346 -~gI~~~~~~L~~~i~  360 (442)
T TIGR00450       346 -LKIKALVDLLTQKIN  360 (442)
T ss_pred             -CCHHHHHHHHHHHHH
Confidence             588888877766553

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PLN03108 Rab family protein; Provisional

Probab=97.82  E-value=0.00013  Score=66.89  Aligned_cols=89  Identities=17%  Similarity=0.131  Sum_probs=58.1

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ...+..+|.+|+|+|+.++...  ..+..++.   . ...+.|+++|+||+||.... ......+.+...+....+.+|+
T Consensus        73 ~~~~~~ad~~vlv~D~~~~~s~--~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  150 (210)
T PLN03108         73 RSYYRGAAGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  150 (210)
T ss_pred             HHHhccCCEEEEEEECCcHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence            3456789999999999876532  22333332   1 12468999999999996532 1122223333344556788999


Q ss_pred             cCCCChHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQF  297 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~  297 (355)
                      +++.|++++++.+...
T Consensus       151 ~~~~~v~e~f~~l~~~  166 (210)
T PLN03108        151 KTAQNVEEAFIKTAAK  166 (210)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999988665433

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.81  E-value=0.00013  Score=78.93  Aligned_cols=100  Identities=15%  Similarity=0.155  Sum_probs=64.2

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHH---hh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVL---SK  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l---~~  270 (355)
                      +||.. +.......+..+|++|+|+|+.+............+..  .+.|+|+|+||+|+....  ....+...+   ..
T Consensus       303 PGhe~-F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e  379 (742)
T CHL00189        303 PGHEA-FSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPE  379 (742)
T ss_pred             CcHHH-HHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchH
Confidence            56532 33333457789999999999988654333333344433  579999999999997532  111222111   11


Q ss_pred             hC--CceEEEeeecCCCChHHHHHHHHHHH
Q 018454          271 EY--PSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       271 ~~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      ..  .+.++.+||.+|.|+++|++.|..+.
T Consensus       380 ~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        380 KWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             hhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            11  24567899999999999999887654

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=5.5e-05  Score=78.01  Aligned_cols=96  Identities=19%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh---hCCceEE
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK---EYPSLAF  277 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~---~~p~~~f  277 (355)
                      .+-.++.+.+..||-+|+||||...+-.  .-+..+-.....+..+|.|+||+||-... .++....+.+   ..+..++
T Consensus       137 DFs~EVsRslaac~G~lLvVDA~qGvqA--QT~anf~lAfe~~L~iIpVlNKIDlp~ad-pe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  137 DFSGEVSRSLAACDGALLVVDASQGVQA--QTVANFYLAFEAGLAIIPVLNKIDLPSAD-PERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             cccceehehhhhcCceEEEEEcCcCchH--HHHHHHHHHHHcCCeEEEeeeccCCCCCC-HHHHHHHHHHHhcCCccceE
Confidence            3455677799999999999999865432  33333322222578899999999985432 2333333333   3456789


Q ss_pred             EeeecCCCChHHHHHHHHHHHh
Q 018454          278 HASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++||++|+|+++|++++.+..+
T Consensus       214 ~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhCC
Confidence            9999999999999999887765

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=97.80  E-value=0.00011  Score=80.21  Aligned_cols=86  Identities=19%  Similarity=0.167  Sum_probs=63.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChH
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKG  288 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~  288 (355)
                      ....+|+||+|+|+.+..  +...+...+.+  .++|+++|+||+|+........-.+.+++.....++.+|+.++.|++
T Consensus        82 ~~~~aD~vI~VvDat~le--r~l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GId  157 (772)
T PRK09554         82 LSGDADLLINVVDASNLE--RNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIE  157 (772)
T ss_pred             hccCCCEEEEEecCCcch--hhHHHHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHH
Confidence            356899999999998743  33344444444  57999999999999754333333455555555667888999999999


Q ss_pred             HHHHHHHHHH
Q 018454          289 SLLSVLRQFA  298 (355)
Q Consensus       289 ~Ll~~L~q~~  298 (355)
                      +|.+.+.+..
T Consensus       158 eL~~~I~~~~  167 (772)
T PRK09554        158 ALKLAIDRHQ  167 (772)
T ss_pred             HHHHHHHHhh
Confidence            9999988765

>cd04129 Rho2 Rho2 subfamily

Probab=97.79  E-value=7.3e-05  Score=66.82  Aligned_cols=90  Identities=14%  Similarity=0.112  Sum_probs=58.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhH-----------HHHHHHHhhhCC-c
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWAT-----------KGWLRVLSKEYP-S  274 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-----------~~w~~~l~~~~p-~  274 (355)
                      .+..+|++|+|.|..++.....  ..+...+....++.|+|+|+||+||.+....           ..-...+.+... .
T Consensus        69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (187)
T cd04129          69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK  148 (187)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence            3578899999999877653221  1233344433457999999999998642110           111222333333 3


Q ss_pred             eEEEeeecCCCChHHHHHHHHHHH
Q 018454          275 LAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       275 ~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      ..|.+||+++.|++++++.|.+.+
T Consensus       149 ~~~e~Sa~~~~~v~~~f~~l~~~~  172 (187)
T cd04129         149 KYMECSALTGEGVDDVFEAATRAA  172 (187)
T ss_pred             EEEEccCCCCCCHHHHHHHHHHHH
Confidence            567899999999999999887554

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.78  E-value=0.00017  Score=74.49  Aligned_cols=88  Identities=15%  Similarity=0.014  Sum_probs=55.3

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHHHHHHHhh---h----
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVLSK---E----  271 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~w~~~l~~---~----  271 (355)
                      ++...+...+..+|++|+|+|+.+...........++... .-+++|+|+||+|++..  .......+.+..   .    
T Consensus       119 ~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~  197 (474)
T PRK05124        119 QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGN  197 (474)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCC
Confidence            4555566668999999999999887654333333333321 23578999999999842  222222222221   1    


Q ss_pred             CCceEEEeeecCCCChHH
Q 018454          272 YPSLAFHASINKSFGKGS  289 (355)
Q Consensus       272 ~p~~~f~vSa~~~~Gi~~  289 (355)
                      ....++.+|++++.|+..
T Consensus       198 ~~~~iipvSA~~g~ni~~  215 (474)
T PRK05124        198 LDIRFVPLSALEGDNVVS  215 (474)
T ss_pred             CCceEEEEEeecCCCccc
Confidence            124578899999999864

>cd04167 Snu114p Snu114p subfamily

Probab=97.78  E-value=7e-05  Score=68.63  Aligned_cols=53  Identities=26%  Similarity=0.303  Sum_probs=38.3

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      +...+...+..+|.+|+|+|+.+........+.+.+..  .++|+++|+||+|++
T Consensus        84 f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          84 FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccC
Confidence            34556677889999999999987664433333333332  468999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.77  E-value=0.0002  Score=72.51  Aligned_cols=88  Identities=17%  Similarity=0.055  Sum_probs=55.8

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHh---hhC---
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLS---KEY---  272 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~---~~~---  272 (355)
                      ++...+...+..+|++|+|+|+.++..........++... ..+++|+|+||+|++...  ......+.+.   ...   
T Consensus        92 ~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~  170 (406)
T TIGR02034        92 QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFR  170 (406)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCC
Confidence            3445556678899999999999987665554444444331 235688999999998522  1111222221   111   


Q ss_pred             CceEEEeeecCCCChHH
Q 018454          273 PSLAFHASINKSFGKGS  289 (355)
Q Consensus       273 p~~~f~vSa~~~~Gi~~  289 (355)
                      ...++.+|+.+|.|+.+
T Consensus       171 ~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       171 DVTFIPLSALKGDNVVS  187 (406)
T ss_pred             CccEEEeecccCCCCcc
Confidence            13477899999999874

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.77  E-value=0.00016  Score=73.38  Aligned_cols=93  Identities=16%  Similarity=0.075  Sum_probs=56.4

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHH--HHhhcCCCcEEEEEeccCCCC--hhh----HHHHHHH
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERH--LKEHCKHKHMILLLNKCDLVP--AWA----TKGWLRV  267 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~--L~~~~~~k~vILVlNK~DLvp--~~~----~~~w~~~  267 (355)
                      +|| .+++......+..+|++|+|+|+.++...........  +.......++|+|+||+|++.  ...    ..++.+.
T Consensus        93 pGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~  171 (426)
T TIGR00483        93 PGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNL  171 (426)
T ss_pred             CCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHH
Confidence            344 3466666667889999999999998742222111111  222223357899999999974  221    1223333


Q ss_pred             HhhhC----CceEEEeeecCCCChHH
Q 018454          268 LSKEY----PSLAFHASINKSFGKGS  289 (355)
Q Consensus       268 l~~~~----p~~~f~vSa~~~~Gi~~  289 (355)
                      +....    ...++.+||+++.|+.+
T Consensus       172 ~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       172 IKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHcCCCcccceEEEeeccccccccc
Confidence            33221    24578899999999875

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.77  E-value=0.00024  Score=75.31  Aligned_cols=88  Identities=18%  Similarity=0.212  Sum_probs=58.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH------------------HHHH-----
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT------------------KGWL-----  265 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~------------------~~w~-----  265 (355)
                      .+..+|++|+|+|+.+............+..  .+.|+|+|+||+|+.+.+..                  ..+.     
T Consensus        89 ~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~  166 (590)
T TIGR00491        89 GGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYN  166 (590)
T ss_pred             HHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHH
Confidence            5678999999999998654433444444443  47899999999999864310                  0110     


Q ss_pred             --HHHhhh-------------C-CceEEEeeecCCCChHHHHHHHHHHH
Q 018454          266 --RVLSKE-------------Y-PSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       266 --~~l~~~-------------~-p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                        ..+.+.             . .+.++.+||.+|.|+++|+..|..++
T Consensus       167 lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       167 LVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence              111111             1 24578899999999999998875433

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PLN03127 Elongation factor Tu; Provisional

Probab=97.76  E-value=0.00017  Score=74.07  Aligned_cols=101  Identities=14%  Similarity=0.090  Sum_probs=62.8

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhH-HHHHHHHhhh--
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWAT-KGWLRVLSKE--  271 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~-~~w~~~l~~~--  271 (355)
                      +|| .+++..+...+..+|++++|+|+.+.......++..++..  .+.| +|+|+||+|+++.... +.....+.+.  
T Consensus       132 PGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~  208 (447)
T PLN03127        132 PGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS  208 (447)
T ss_pred             CCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence            344 3466666667788999999999998766555555555554  4677 5789999999864322 2122122211  


Q ss_pred             ---CC---ceEEEeeec---CCCC-------hHHHHHHHHHHHh
Q 018454          272 ---YP---SLAFHASIN---KSFG-------KGSLLSVLRQFAR  299 (355)
Q Consensus       272 ---~p---~~~f~vSa~---~~~G-------i~~Ll~~L~q~~~  299 (355)
                         ++   ..++.+|+.   ++.|       +..|++.|.++++
T Consensus       209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence               21   234455543   4544       6788888877754

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.75  E-value=0.00011  Score=79.88  Aligned_cols=88  Identities=23%  Similarity=0.180  Sum_probs=58.5

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh------hC--CceEEE
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK------EY--PSLAFH  278 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~------~~--p~~~f~  278 (355)
                      ...+..+|++|+|+|+.+...........++..  .+.|+|+|+||+|+.... .......+..      .+  .+.+|.
T Consensus       355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vp  431 (787)
T PRK05306        355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVP  431 (787)
T ss_pred             HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEE
Confidence            346788999999999998654433333344433  579999999999995421 1111122211      11  145788


Q ss_pred             eeecCCCChHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      +||++|.|+.+|++.|...
T Consensus       432 vSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        432 VSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             EeCCCCCCchHHHHhhhhh
Confidence            9999999999999987643

>PRK12735 elongation factor Tu; Reviewed

Probab=97.72  E-value=0.00025  Score=71.53  Aligned_cols=101  Identities=19%  Similarity=0.196  Sum_probs=65.0

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEE-EEEeccCCCChhhHH-----HHHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI-LLLNKCDLVPAWATK-----GWLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vI-LVlNK~DLvp~~~~~-----~w~~~l~  269 (355)
                      +|| .++...+...+..+|++++|+|+.+............+..  .++|.+ +|+||+|+++.....     +....+.
T Consensus        83 PGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~  159 (396)
T PRK12735         83 PGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             CCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            455 4667778888999999999999988554433333344433  467865 579999998543221     1222222


Q ss_pred             hh-CC---ceEEEeeecCCC----------ChHHHHHHHHHHHh
Q 018454          270 KE-YP---SLAFHASINKSF----------GKGSLLSVLRQFAR  299 (355)
Q Consensus       270 ~~-~p---~~~f~vSa~~~~----------Gi~~Ll~~L~q~~~  299 (355)
                      .. ++   ..++.+|+.++.          ++.+|++.|.++.+
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            21 11   345778998874          67888888887654

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.72  E-value=2e-05  Score=76.67  Aligned_cols=36  Identities=31%  Similarity=0.485  Sum_probs=30.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeE
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWY  342 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~  342 (355)
                      --.||+||+||+|||||+|+|.+.+- +|+++|=||.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL  231 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTL  231 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCC-cccccceeee
Confidence            35689999999999999999998764 8888887773

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=97.71  E-value=0.00034  Score=65.52  Aligned_cols=49  Identities=14%  Similarity=0.068  Sum_probs=37.8

Q ss_pred             CcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454          244 KHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       244 k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      +|+++|+||+|+++......|    ....  ..+.+||.++.|+++|++.|-+.+
T Consensus       177 ~p~iiV~NK~Dl~~~~~~~~~----~~~~--~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         177 IPCLYVYNKIDLISIEELDLL----ARQP--NSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             eeEEEEEECccCCCHHHHHHH----hcCC--CEEEEcCCCCCCHHHHHHHHHHHh
Confidence            689999999999876654433    2222  256779999999999999988765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.71  E-value=0.00024  Score=79.31  Aligned_cols=90  Identities=20%  Similarity=0.230  Sum_probs=60.3

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH--------------HHHHHH------
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT--------------KGWLRV------  267 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~--------------~~w~~~------  267 (355)
                      .....+|++|+|+|+.+............+..  .++|+|+|+||+|+.+.+..              ..-...      
T Consensus       545 ~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~  622 (1049)
T PRK14845        545 RGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLY  622 (1049)
T ss_pred             hhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence            35677999999999988655444444455544  47899999999999864321              000111      


Q ss_pred             -----Hhhh--------------CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          268 -----LSKE--------------YPSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       268 -----l~~~--------------~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                           |.+.              ..+.++++||.+|.|+++|+..|..+.+
T Consensus       623 ~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        623 ELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                 1111              1245678999999999999998865443

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=97.71  E-value=3.4e-05  Score=75.23  Aligned_cols=47  Identities=30%  Similarity=0.382  Sum_probs=38.3

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC-------ccccCCCCCee--EEEEEEEeeec
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN-------VILFFPASVVW--YWFYCQLLFYF  352 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~-------~~~vs~iPGtT--~~~y~~l~~~~  352 (355)
                      ..+|+|||+||||||||+|.|.+.+       ..|.-|+||+-  +.-+|+|++-=
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~P  118 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLP  118 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCc
Confidence            4789999999999999999999743       45677889986  77778887643

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.70  E-value=0.00018  Score=76.22  Aligned_cols=87  Identities=22%  Similarity=0.188  Sum_probs=57.3

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHHHHHHHh---hhC--CceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVLS---KEY--PSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~w~~~l~---~~~--p~~~f~vS  280 (355)
                      ..+..+|++|+|+|+.+............+..  .+.|+|+++||+|+...  .....+...+.   ..+  ...++.+|
T Consensus       154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iS  231 (587)
T TIGR00487       154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVS  231 (587)
T ss_pred             hhhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence            46788999999999987654333333333332  57899999999999532  12222222111   111  23578899


Q ss_pred             ecCCCChHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQ  296 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q  296 (355)
                      |++|.|+.+|++.|..
T Consensus       232 AktGeGI~eLl~~I~~  247 (587)
T TIGR00487       232 ALTGDGIDELLDMILL  247 (587)
T ss_pred             CCCCCChHHHHHhhhh
Confidence            9999999999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=97.70  E-value=0.00045  Score=60.60  Aligned_cols=97  Identities=20%  Similarity=0.258  Sum_probs=67.9

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----C
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----Y  272 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~  272 (355)
                      +.+|+.-   -..+|+|+|+|||.||..-  .-.++...+.+ ...+.|++++.||.|+-..-......+.+.-.    .
T Consensus        79 rsmWery---cR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdR  155 (186)
T KOG0075|consen   79 RSMWERY---CRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDR  155 (186)
T ss_pred             HHHHHHH---hhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccc
Confidence            5677764   4567999999999997532  11345555543 23578999999999986544334444444221    1


Q ss_pred             CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          273 PSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       273 p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      -+..|.+|++...+++.++++|.+.+.
T Consensus       156 EvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  156 EVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             eEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence            356789999999999999999998875

>TIGR00485 EF-Tu translation elongation factor TU

Probab=97.67  E-value=0.00028  Score=71.07  Aligned_cols=100  Identities=17%  Similarity=0.155  Sum_probs=61.0

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEE-EEEeccCCCChhh-HH----HHHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI-LLLNKCDLVPAWA-TK----GWLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vI-LVlNK~DLvp~~~-~~----~w~~~l~  269 (355)
                      +|| .+++......+..+|++++|+|+.++..........++..  .+.|.+ +|+||+|+++... .+    +....+.
T Consensus        83 pGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~  159 (394)
T TIGR00485        83 PGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             Cch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            455 3455666777889999999999998654444444444443  366755 6899999986432 22    1222232


Q ss_pred             hhC--C--ceEEEeeecCCC--------ChHHHHHHHHHHH
Q 018454          270 KEY--P--SLAFHASINKSF--------GKGSLLSVLRQFA  298 (355)
Q Consensus       270 ~~~--p--~~~f~vSa~~~~--------Gi~~Ll~~L~q~~  298 (355)
                      ...  +  ..++.+|+.++.        ++.+|++.|.++.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~  200 (394)
T TIGR00485       160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI  200 (394)
T ss_pred             hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence            221  1  456788998764        3445666665543

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.66  E-value=0.00029  Score=75.16  Aligned_cols=96  Identities=19%  Similarity=0.093  Sum_probs=60.8

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC--hhhHHHHHHHHh---hh--CC-
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP--AWATKGWLRVLS---KE--YP-  273 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp--~~~~~~w~~~l~---~~--~p-  273 (355)
                      +.......+..+|++|+|+|+.++..........++... ..+++|+|+||+|++.  ..........+.   ..  +. 
T Consensus       117 f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~  195 (632)
T PRK05506        117 YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHD  195 (632)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCC
Confidence            444555678999999999999887655444444444331 2367889999999985  222222222222   11  21 


Q ss_pred             ceEEEeeecCCCChH------------HHHHHHHHHH
Q 018454          274 SLAFHASINKSFGKG------------SLLSVLRQFA  298 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~------------~Ll~~L~q~~  298 (355)
                      ..++++||.+|.|+.            .|++.|..+.
T Consensus       196 ~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~  232 (632)
T PRK05506        196 VTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVE  232 (632)
T ss_pred             ccEEEEecccCCCccccccCCCcccHhHHHHHHhcCC
Confidence            346789999999986            4677666543

>cd01878 HflX HflX subfamily

Probab=97.66  E-value=0.00011  Score=66.39  Aligned_cols=36  Identities=28%  Similarity=0.377  Sum_probs=28.5

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .-..|+++|.+|||||||+|.|.+.. +.+...|++|
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t   75 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFAT   75 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcch-hccCCcccee
Confidence            34789999999999999999999875 3444555555

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.64  E-value=3.1e-05  Score=75.99  Aligned_cols=44  Identities=20%  Similarity=0.248  Sum_probs=36.2

Q ss_pred             eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      -.||+||+||+|||||||++..-+ .+++++|=||-.=...++++
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~  203 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRV  203 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEe
Confidence            458999999999999999998654 88999998886666666655

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=97.63  E-value=3.4e-05  Score=78.86  Aligned_cols=49  Identities=29%  Similarity=0.302  Sum_probs=41.9

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeec
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYF  352 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~  352 (355)
                      +...-+..+||||||||||++|.+...+ ..|.|+|-||+..|++.+.|-
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dyk  213 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYK  213 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhh
Confidence            4556778999999999999998887554 789999999999999988873

>COG2229 Predicted GTPase [General function prediction only]

Probab=97.62  E-value=0.00048  Score=62.21  Aligned_cols=99  Identities=16%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             ccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCC-CcEEEEEeccCCCChhhHHHHHHHHhhh-C
Q 018454          195 EKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKH-KHMILLLNKCDLVPAWATKGWLRVLSKE-Y  272 (355)
Q Consensus       195 ~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~-k~vILVlNK~DLvp~~~~~~w~~~l~~~-~  272 (355)
                      .+||.+ ++--..-....++-+|++||++.|......++..++..  .+ .|+++.+||.||-+.+..+...+.+... .
T Consensus        75 tPGq~R-F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~--~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~  151 (187)
T COG2229          75 TPGQER-FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTS--RNPIPVVVAINKQDLFDALPPEKIREALKLELL  151 (187)
T ss_pred             CCCcHH-HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhh--ccCCCEEEEeeccccCCCCCHHHHHHHHHhccC
Confidence            367754 32222234566899999999999987766777777765  34 8999999999998777667777777665 3


Q ss_pred             CceEEEeeecCCCChHHHHHHHHH
Q 018454          273 PSLAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       273 p~~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      ...++..++..++|..+.+..|..
T Consensus       152 ~~~vi~~~a~e~~~~~~~L~~ll~  175 (187)
T COG2229         152 SVPVIEIDATEGEGARDQLDVLLL  175 (187)
T ss_pred             CCceeeeecccchhHHHHHHHHHh
Confidence            566777899999998877776543

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.60  E-value=0.00032  Score=64.56  Aligned_cols=97  Identities=22%  Similarity=0.228  Sum_probs=69.3

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc-CCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCce
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC-KHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSL  275 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~-~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~  275 (355)
                      |...-+..++..|+.|++|.|..+..+.  .++..|+.   +.. .+.+.+||.||+|+... .+..+--+.|..++...
T Consensus        73 rf~ti~~sYyrgA~gi~LvyDitne~Sf--eni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~  150 (207)
T KOG0078|consen   73 RFRTITTAYYRGAMGILLVYDITNEKSF--ENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIK  150 (207)
T ss_pred             hHHHHHHHHHhhcCeeEEEEEccchHHH--HHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCe
Confidence            3444455678899999999999876543  34444544   332 37899999999999753 34445556677777888


Q ss_pred             EEEeeecCCCChHHHHHHHHHHHh
Q 018454          276 AFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       276 ~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      .+.+||++|.++.+.+-.|.....
T Consensus       151 F~EtSAk~~~NI~eaF~~La~~i~  174 (207)
T KOG0078|consen  151 FFETSAKTNFNIEEAFLSLARDIL  174 (207)
T ss_pred             EEEccccCCCCHHHHHHHHHHHHH
Confidence            889999999999987776654443

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.0004  Score=71.63  Aligned_cols=99  Identities=17%  Similarity=0.117  Sum_probs=65.1

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----  271 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----  271 (355)
                      +||.....-+.. =.+-+|++++|||+.|.....-.+-.+.++.  .+.|+|+++||+|..+.. .......+.+.    
T Consensus        63 PGHeAFt~mRaR-Ga~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~  138 (509)
T COG0532          63 PGHEAFTAMRAR-GASVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVP  138 (509)
T ss_pred             CcHHHHHHHHhc-CCccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCH
Confidence            454433333322 2367899999999998776555444555554  689999999999987432 22222222221    


Q ss_pred             --C--CceEEEeeecCCCChHHHHHHHHHHH
Q 018454          272 --Y--PSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       272 --~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                        +  -+.++.+||++|+|+.+|+..+.-.+
T Consensus       139 E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         139 EEWGGDVIFVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             hhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence              1  25677899999999999999765443

>PRK10218 GTP-binding protein; Provisional

Probab=97.58  E-value=0.00039  Score=73.93  Aligned_cols=98  Identities=18%  Similarity=0.178  Sum_probs=67.4

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh---hhHHHHHHHHhhh------C
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA---WATKGWLRVLSKE------Y  272 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~---~~~~~w~~~l~~~------~  272 (355)
                      +.......+..+|.+|+|+|+.+........+...+..  .++|.|+|+||+|+...   .......+.+...      .
T Consensus        81 f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~  158 (607)
T PRK10218         81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL  158 (607)
T ss_pred             hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence            34455668899999999999987654444444444443  57899999999998642   3334444444221      1


Q ss_pred             CceEEEeeecCCC----------ChHHHHHHHHHHHhhh
Q 018454          273 PSLAFHASINKSF----------GKGSLLSVLRQFARLK  301 (355)
Q Consensus       273 p~~~f~vSa~~~~----------Gi~~Ll~~L~q~~~~~  301 (355)
                      ...++.+|+.+|+          |+..|++.+..+++..
T Consensus       159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            2346788999998          5788998888887643

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.56  E-value=0.00064  Score=72.04  Aligned_cols=87  Identities=21%  Similarity=0.254  Sum_probs=57.2

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH------------------HH------
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT------------------KG------  263 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~------------------~~------  263 (355)
                      ..+..+|++|+|+|+.+...........++..  .+.|+++++||+|+.+.+..                  ..      
T Consensus        90 ~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~  167 (586)
T PRK04004         90 RGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLY  167 (586)
T ss_pred             HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHH
Confidence            45678999999999998543333333444443  57899999999999753220                  00      


Q ss_pred             -HHHHHhhh--------------CCceEEEeeecCCCChHHHHHHHHH
Q 018454          264 -WLRVLSKE--------------YPSLAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       264 -w~~~l~~~--------------~p~~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                       ...++...              ..+.++.+|+.++.|+++|++.+..
T Consensus       168 ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        168 ELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence             11122211              1134678899999999999887754

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.56  E-value=0.00028  Score=65.75  Aligned_cols=90  Identities=19%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChh-------------hHHHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAW-------------ATKGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~-------------~~~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|..++.....  ..+...+....++.|+|||.||+||....             ...+-...+.+...
T Consensus        69 ~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~  148 (222)
T cd04173          69 AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG  148 (222)
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC
Confidence            4689999999999998853221  11222233334678999999999996421             11112223333444


Q ss_pred             c-eEEEeeecCCC-ChHHHHHHHHHHH
Q 018454          274 S-LAFHASINKSF-GKGSLLSVLRQFA  298 (355)
Q Consensus       274 ~-~~f~vSa~~~~-Gi~~Ll~~L~q~~  298 (355)
                      . ..|.+||+++. |+.+++......+
T Consensus       149 ~~~y~E~SAk~~~~~V~~~F~~~~~~~  175 (222)
T cd04173         149 AVSYVECSSRSSERSVRDVFHVATVAS  175 (222)
T ss_pred             CCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence            3 46788999988 5999998776543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.56  E-value=5.6e-05  Score=74.11  Aligned_cols=37  Identities=30%  Similarity=0.422  Sum_probs=30.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeE
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWY  342 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~  342 (355)
                      ..+.+|+||.|||||||++|+|...... ++..|=+|.
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TI   55 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTI   55 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCccee
Confidence            4578999999999999999999987644 777776663

>cd04155 Arl3 Arl3 subfamily

Probab=97.56  E-value=0.00011  Score=63.91  Aligned_cols=48  Identities=21%  Similarity=0.405  Sum_probs=36.0

Q ss_pred             HHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          291 LSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       291 l~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      +..++++.+.   .+..+|+++|.+|||||||+|+|.+.....+.|..|.+
T Consensus         2 ~~~~~~~~~~---~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~   49 (173)
T cd04155           2 LSLLRKLRKS---SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFN   49 (173)
T ss_pred             hhHHHHhhcc---CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcc
Confidence            3455555432   34688999999999999999999987665666777743

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PLN03126 Elongation factor Tu; Provisional

Probab=97.53  E-value=0.001  Score=68.95  Aligned_cols=87  Identities=16%  Similarity=0.066  Sum_probs=54.6

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhh-HHH----HHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWA-TKG----WLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~-~~~----w~~~l~  269 (355)
                      +|| .++...+...+..+|++|+|+|+.+............+..  .++| +|+++||+|+++... .+.    ....+.
T Consensus       152 PGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~  228 (478)
T PLN03126        152 PGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLS  228 (478)
T ss_pred             CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence            454 3466677888889999999999998765444444444443  4677 788999999987432 222    222232


Q ss_pred             hh-C---CceEEEeeecCCC
Q 018454          270 KE-Y---PSLAFHASINKSF  285 (355)
Q Consensus       270 ~~-~---p~~~f~vSa~~~~  285 (355)
                      .. +   ...++.+|+.++.
T Consensus       229 ~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        229 SYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             hcCCCcCcceEEEEEccccc
Confidence            21 1   1345667877653

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=97.53  E-value=0.00038  Score=61.18  Aligned_cols=91  Identities=10%  Similarity=0.034  Sum_probs=58.0

Q ss_pred             hhcCCCEEEEEecCCCCCCC-cchHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGT-RCHHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s-~~~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ....+|.+|+|+|+.+.... ....+...+..  ...+.|+|+|+||+|+..... .......+...+...++.+|++++
T Consensus        69 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  148 (180)
T cd04137          69 YSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAREN  148 (180)
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            55678999999998874321 11111122221  124679999999999974321 122223333444456788999999


Q ss_pred             CChHHHHHHHHHHHh
Q 018454          285 FGKGSLLSVLRQFAR  299 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~  299 (355)
                      .|+.+++..|.+.+.
T Consensus       149 ~gv~~l~~~l~~~~~  163 (180)
T cd04137         149 ENVEEAFELLIEEIE  163 (180)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999998876654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.51  E-value=0.0004  Score=66.64  Aligned_cols=54  Identities=20%  Similarity=0.128  Sum_probs=42.8

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp  257 (355)
                      +..+....+..+|++|+|+|+.+........+.+.+..  .++|+++++||+|+..
T Consensus        77 f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~  130 (270)
T cd01886          77 FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence            45567778899999999999988766555556665554  5789999999999975

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04177 RSR1 RSR1 subgroup

Probab=97.50  E-value=0.00049  Score=59.96  Aligned_cols=88  Identities=17%  Similarity=0.144  Sum_probs=55.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCc-chHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCC-ceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYP-SLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p-~~~f~vSa~~  283 (355)
                      .+..+|.+|+|+|+.++.... ...+...+..  ...+.|+++|+||+|+.+... ...-...+.+.+. ...+.+||++
T Consensus        69 ~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  148 (168)
T cd04177          69 YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARK  148 (168)
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCC
Confidence            456789999999988764221 1222222222  124689999999999975321 1111222223333 4567899999


Q ss_pred             CCChHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQ  296 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q  296 (355)
                      +.|++++++.|..
T Consensus       149 ~~~i~~~f~~i~~  161 (168)
T cd04177         149 RTNVDEVFIDLVR  161 (168)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK12739 elongation factor G; Reviewed

Probab=97.49  E-value=0.00059  Score=73.64  Aligned_cols=60  Identities=22%  Similarity=0.193  Sum_probs=46.7

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA  258 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~  258 (355)
                      +|+. .+..++...+..+|++|+|+|+.+........+..++..  .++|+|+++||+|+...
T Consensus        81 PG~~-~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         81 PGHV-DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             CCHH-HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence            3443 345578889999999999999998876655666666654  57999999999999854

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.00093  Score=61.10  Aligned_cols=102  Identities=19%  Similarity=0.118  Sum_probs=70.1

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcC-CCcEEEEEeccCCCChhhH-HHHHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCK-HKHMILLLNKCDLVPAWAT-KGWLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~-~k~vILVlNK~DLvp~~~~-~~w~~~l~  269 (355)
                      .|| .|+.--+-.++.+|+++|.|.|..|-.+.  ++..+||..    ... +.-++||.||.||+.+... .+--+...
T Consensus        79 AGQ-ERFrslipsY~Rds~vaviVyDit~~~Sf--e~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kA  155 (221)
T KOG0094|consen   79 AGQ-ERFRSLIPSYIRDSSVAVIVYDITDRNSF--ENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKA  155 (221)
T ss_pred             ccH-HHHhhhhhhhccCCeEEEEEEeccccchH--HHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHH
Confidence            454 45555566788999999999999887644  234444432    222 3557889999999986432 12222333


Q ss_pred             hhCCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          270 KEYPSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       270 ~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      +++....+..|++.|+++..|+..+...++.
T Consensus       156 kel~a~f~etsak~g~NVk~lFrrIaa~l~~  186 (221)
T KOG0094|consen  156 KELNAEFIETSAKAGENVKQLFRRIAAALPG  186 (221)
T ss_pred             HHhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence            4456666788999999999999998877764

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=97.44  E-value=0.00016  Score=76.88  Aligned_cols=38  Identities=18%  Similarity=0.088  Sum_probs=33.3

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccCccccCCC-CCeeEE
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKNVILFFPA-SVVWYW  343 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~i-PGtT~~  343 (355)
                      .++|.+||.|||||||+||+|++..++.++.. |+||..
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~  156 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV  156 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE
Confidence            46799999999999999999999998888876 788744

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.42  E-value=0.00038  Score=59.75  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=58.7

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcC-CCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCK-HKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~-~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ..+..+|.+|+|.|..++.+... ..+...+..... +.|++||.||+|+.... ....-...+...+....+.+|++++
T Consensus        67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~  146 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNG  146 (162)
T ss_dssp             HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCC
Confidence            35788999999999987643221 123333333333 58999999999987622 2122223333444566788999999


Q ss_pred             CChHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQ  296 (355)
Q Consensus       285 ~Gi~~Ll~~L~q  296 (355)
                      .|+.+++..|.+
T Consensus       147 ~~v~~~f~~~i~  158 (162)
T PF00071_consen  147 ENVKEIFQELIR  158 (162)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999998887654

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.40  E-value=0.0011  Score=62.42  Aligned_cols=54  Identities=20%  Similarity=0.225  Sum_probs=41.0

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp  257 (355)
                      +..+....+..+|.+|+|+|+.+........+.+++..  .++|+++|+||+|+..
T Consensus        77 f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK~D~~~  130 (237)
T cd04168          77 FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccccC
Confidence            34456667888999999999998765444455555544  5799999999999975

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.0019  Score=65.39  Aligned_cols=96  Identities=17%  Similarity=0.123  Sum_probs=65.1

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC---ceEEE
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP---SLAFH  278 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p---~~~f~  278 (355)
                      .+.-+...+.-+|..++|||+.+.+.....+-...+. ...-++.|+|+||+|++.....+...+.+.....   ..+|.
T Consensus        63 ~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLd-llgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~  141 (447)
T COG3276          63 FISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILD-LLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFK  141 (447)
T ss_pred             HHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHH-hcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccc
Confidence            4444555677899999999997655443322222222 2234566999999999986554444444433221   34578


Q ss_pred             eeecCCCChHHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      .|+.++.|+++|.+.|.++.
T Consensus       142 ~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         142 TSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             cccccCCCHHHHHHHHHHhh
Confidence            89999999999999999888

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=97.39  E-value=0.00034  Score=71.51  Aligned_cols=122  Identities=20%  Similarity=0.188  Sum_probs=81.5

Q ss_pred             ccccCCcchhhhhhhhccccc-----hHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhc----------
Q 018454          177 AEGVEGDGFRDLVRHTMFEKG-----QSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC----------  241 (355)
Q Consensus       177 ~~~~~~~~~~~~~~~~~f~~~-----~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~----------  241 (355)
                      +...+.+||+-.+.++...+.     .-.--++++.+.+..||+|++|+|+.....+.+..+.+.+..+.          
T Consensus       308 ea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~  387 (531)
T KOG1191|consen  308 EAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM  387 (531)
T ss_pred             eeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence            334556677777777665543     11234588899999999999999996666666666666665421          


Q ss_pred             CCCcEEEEEeccCCCChhhHHHH--HHHHhh----hCCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          242 KHKHMILLLNKCDLVPAWATKGW--LRVLSK----EYPSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       242 ~~k~vILVlNK~DLvp~~~~~~w--~~~l~~----~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ..+++|+|+||+|++++.....|  +.+...    .++. ...+|++++.|++.|.+.|.+.+.
T Consensus       388 ~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i-~~~vs~~tkeg~~~L~~all~~~~  450 (531)
T KOG1191|consen  388 EKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPI-VVEVSCTTKEGCERLSTALLNIVE  450 (531)
T ss_pred             cccceEEEechhhccCccccccCCceeccccccCcccce-EEEeeechhhhHHHHHHHHHHHHH
Confidence            22789999999999986322233  122222    2332 234799999999999998766553

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=97.39  E-value=0.00054  Score=63.95  Aligned_cols=53  Identities=19%  Similarity=0.226  Sum_probs=40.7

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      +..++...+..+|.+|+|+|+.+........+.+....  .++|+|+|+||+|+.
T Consensus        86 f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          86 FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence            55567788999999999999998765544444444433  468999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=97.38  E-value=0.00031  Score=62.76  Aligned_cols=38  Identities=18%  Similarity=0.369  Sum_probs=30.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .+.+.|.++|.+|||||||+|.|.+.....+.|..|.+
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~   52 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPT   52 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccc
Confidence            35688999999999999999999987665555555544

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=97.38  E-value=0.0011  Score=69.57  Aligned_cols=54  Identities=17%  Similarity=0.244  Sum_probs=40.3

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp  257 (355)
                      +..+++..+..+|.+|+|+|+.+........+.+....  .+.|+++++||+|+..
T Consensus        92 f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         92 FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL--RDTPIFTFINKLDRDG  145 (526)
T ss_pred             hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--cCCCEEEEEECCcccc
Confidence            44567778889999999999988664443444444433  5899999999999854

>cd01882 BMS1 Bms1

Probab=97.36  E-value=0.00085  Score=62.44  Aligned_cols=80  Identities=15%  Similarity=0.064  Sum_probs=52.9

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcE-EEEEeccCCCChh-hHHHHHHHHhh-----hCC-ce
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM-ILLLNKCDLVPAW-ATKGWLRVLSK-----EYP-SL  275 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~v-ILVlNK~DLvp~~-~~~~w~~~l~~-----~~p-~~  275 (355)
                      ..+...+..+|+|++|+|+..+....+..+...+..  .++|. |+|+||+|+++.. ........+..     ..+ ..
T Consensus        95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~k  172 (225)
T cd01882          95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAK  172 (225)
T ss_pred             HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCc
Confidence            455566788999999999998776666666666654  46775 4599999998432 23333333322     222 45


Q ss_pred             EEEeeecCCC
Q 018454          276 AFHASINKSF  285 (355)
Q Consensus       276 ~f~vSa~~~~  285 (355)
                      ++.+||+++-
T Consensus       173 i~~iSa~~~~  182 (225)
T cd01882         173 LFYLSGIVHG  182 (225)
T ss_pred             EEEEeeccCC
Confidence            7788988763

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=97.32  E-value=0.0016  Score=66.81  Aligned_cols=99  Identities=17%  Similarity=0.067  Sum_probs=61.2

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCC-------CcchHHHHHHHhhcCCCc-EEEEEeccCC--CC--hhhHHH
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQG-------TRCHHLERHLKEHCKHKH-MILLLNKCDL--VP--AWATKG  263 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~-------s~~~~l~~~L~~~~~~k~-vILVlNK~DL--vp--~~~~~~  263 (355)
                      +|| .++...+...+..+|++|+|+|+.+...       ........++..  .++| +|+++||+|+  +.  ......
T Consensus        93 PGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~~~~~~~~~  169 (446)
T PTZ00141         93 PGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDKTVNYSQERYDE  169 (446)
T ss_pred             CCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccccchhhHHHHHH
Confidence            454 4567778888999999999999987642       112222223332  3555 6799999994  32  222222


Q ss_pred             ----HHHHHhhh-C---CceEEEeeecCCCChH------------HHHHHHHHH
Q 018454          264 ----WLRVLSKE-Y---PSLAFHASINKSFGKG------------SLLSVLRQF  297 (355)
Q Consensus       264 ----w~~~l~~~-~---p~~~f~vSa~~~~Gi~------------~Ll~~L~q~  297 (355)
                          ....+... +   ...++++|+.+|.|+.            .|++.|..+
T Consensus       170 i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~  223 (446)
T PTZ00141        170 IKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL  223 (446)
T ss_pred             HHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC
Confidence                22233222 1   2456789999999985            477777654

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=97.31  E-value=0.00095  Score=65.38  Aligned_cols=50  Identities=18%  Similarity=0.084  Sum_probs=39.1

Q ss_pred             CcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          244 KHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       244 k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +|.++|+||+|++..+......+.    .  ..+.+||..++|+++|.+.|-..+.
T Consensus       240 ~p~l~v~NKiD~~~~e~~~~l~~~----~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         240 KPALYVVNKIDLPGLEELERLARK----P--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             eeeEEEEecccccCHHHHHHHHhc----c--ceEEEecccCCCHHHHHHHHHHhhC
Confidence            899999999999986544433332    2  4577899999999999999877765

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=97.27  E-value=0.00045  Score=60.92  Aligned_cols=37  Identities=22%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ...+|.++|.+|||||||||+|.......+.|..|.+
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~   50 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN   50 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc
Confidence            3578999999999999999999877666667777765

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.25  E-value=0.0011  Score=65.68  Aligned_cols=85  Identities=11%  Similarity=0.077  Sum_probs=52.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----------CCceEE
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----------YPSLAF  277 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----------~p~~~f  277 (355)
                      ++..+|++|+|++   |....+. .+..-+.    ...-|+|+||+|+++..........+...          ....++
T Consensus       166 i~~~aD~vlvv~~---p~~gd~iq~~k~gi~----E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi  238 (332)
T PRK09435        166 VAGMVDFFLLLQL---PGAGDELQGIKKGIM----ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVL  238 (332)
T ss_pred             HHHhCCEEEEEec---CCchHHHHHHHhhhh----hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEE
Confidence            4678999999975   2222111 1111011    12349999999998754333333333221          113467


Q ss_pred             EeeecCCCChHHHHHHHHHHHhh
Q 018454          278 HASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      .+|+.++.|+++|++.|.++.+.
T Consensus       239 ~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        239 TCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH
Confidence            78999999999999999988763

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.21  E-value=0.00086  Score=61.04  Aligned_cols=91  Identities=14%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      +...++.+|+|.|+.+..+.  ..+..++.+   . .++.-+.||.||+||... .+..+-...+.+......|..||++
T Consensus        74 YyRgA~AAivvYDit~~~SF--~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKT  151 (200)
T KOG0092|consen   74 YYRGANAAIVVYDITDEESF--EKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKT  151 (200)
T ss_pred             eecCCcEEEEEEecccHHHH--HHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEeccc
Confidence            45678999999999987543  234444443   2 233445679999999873 3322223334444566778899999


Q ss_pred             CCChHHHHHHHHHHHhhh
Q 018454          284 SFGKGSLLSVLRQFARLK  301 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~~~  301 (355)
                      +.|+++|+..|.+.++..
T Consensus       152 g~Nv~~if~~Ia~~lp~~  169 (200)
T KOG0092|consen  152 GENVNEIFQAIAEKLPCS  169 (200)
T ss_pred             ccCHHHHHHHHHHhccCc
Confidence            999999999998777643

>TIGR00503 prfC peptide chain release factor 3

Probab=97.20  E-value=0.0025  Score=66.74  Aligned_cols=58  Identities=21%  Similarity=0.309  Sum_probs=42.6

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      +|+ ..+..+++..+..+|.+|+|+|+.+........+.+.+..  .++|+|+++||+|+.
T Consensus        88 PG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~~PiivviNKiD~~  145 (527)
T TIGR00503        88 PGH-EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL--RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CCh-hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccc
Confidence            444 3555677888999999999999987654443444444433  578999999999985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.20  E-value=0.0018  Score=63.38  Aligned_cols=92  Identities=15%  Similarity=0.162  Sum_probs=59.5

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhH-HHH---HHHHhhhC--CceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWAT-KGW---LRVLSKEY--PSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~-~~w---~~~l~~~~--p~~~f~vS  280 (355)
                      .-.+-.|-.|+|++|..|- ..+.--+.++.- ...-+++|+|=||+||+.++.. +.+   +++++...  ...++++|
T Consensus       105 sGAAlMDgAlLvIaANEpc-PQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiS  183 (415)
T COG5257         105 SGAALMDGALLVIAANEPC-PQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPIS  183 (415)
T ss_pred             cchhhhcceEEEEecCCCC-CCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeeh
Confidence            3445568899999998652 222222222211 1245889999999999987543 222   22222111  23467889


Q ss_pred             ecCCCChHHHHHHHHHHHhh
Q 018454          281 INKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      |..+.+++.|++.|.++.+.
T Consensus       184 A~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         184 AQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             hhhccCHHHHHHHHHHhCCC
Confidence            99999999999999999874

>cd04154 Arl2 Arl2 subfamily

Probab=97.18  E-value=0.00049  Score=60.35  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ..++|.++|.+|||||||+|+|.+.....+.|..|..
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~   49 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ   49 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc
Confidence            4578999999999999999999988766677777743

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.18  E-value=0.002  Score=66.80  Aligned_cols=88  Identities=19%  Similarity=0.129  Sum_probs=62.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC--------CceEEEee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY--------PSLAFHAS  280 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~--------p~~~f~vS  280 (355)
                      -..-.|+|++||-|.|.....-.+..++.+.  .+.|+|+.+||||- |....++....|....        -+.++.+|
T Consensus       221 GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiDk-p~a~pekv~~eL~~~gi~~E~~GGdVQvipiS  297 (683)
T KOG1145|consen  221 GANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKIDK-PGANPEKVKRELLSQGIVVEDLGGDVQVIPIS  297 (683)
T ss_pred             cCccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccCC-CCCCHHHHHHHHHHcCccHHHcCCceeEEEee
Confidence            3456799999999998765444444444443  68999999999995 3334455555554432        25678999


Q ss_pred             ecCCCChHHHHHHHHHHHh
Q 018454          281 INKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~  299 (355)
                      |++|.|++.|.+.+.-.+.
T Consensus       298 Al~g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  298 ALTGENLDLLEEAILLLAE  316 (683)
T ss_pred             cccCCChHHHHHHHHHHHH
Confidence            9999999999887654443

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.0025  Score=58.23  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCc
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPS  274 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~  274 (355)
                      .|+..-+..+..+++-||+|.|..+-.+..  .+..|+.+   . ..+.+.+||.|||||...... ..-.+.|...++.
T Consensus        69 ERFrtit~syYR~ahGii~vyDiT~~~SF~--~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~  146 (205)
T KOG0084|consen   69 ERFRTITSSYYRGAHGIIFVYDITKQESFN--NVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGI  146 (205)
T ss_pred             HHHhhhhHhhccCCCeEEEEEEcccHHHhh--hHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCC
Confidence            555566677889999999999998754432  34444443   2 245799999999999765432 1222344444554


Q ss_pred             e-EEEeeecCCCChHHHHHHHHHHHh
Q 018454          275 L-AFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       275 ~-~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      . .+..||+++.++++.+..|...+.
T Consensus       147 ~~f~ETSAK~~~NVe~~F~~la~~lk  172 (205)
T KOG0084|consen  147 PIFLETSAKDSTNVEDAFLTLAKELK  172 (205)
T ss_pred             cceeecccCCccCHHHHHHHHHHHHH
Confidence            4 667899999999998887765543

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.13  E-value=0.0028  Score=57.87  Aligned_cols=106  Identities=11%  Similarity=0.121  Sum_probs=68.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH---HhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|.+|+|+|..+....  ..+..++   .....+.|+++|+||+|+........... +........+.+|++++.
T Consensus        78 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~e~Sa~~~~  154 (215)
T PTZ00132         78 YYIKGQCAIIMFDVTSRITY--KNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQIT-FHRKKNLQYYDISAKSNY  154 (215)
T ss_pred             HhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHH-HHHHcCCEEEEEeCCCCC
Confidence            45678999999999876532  2222332   22235789999999999975432222222 223344567789999999


Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCC-----CChhHH
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPN-----VGKSSV  322 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pN-----VGKSSL  322 (355)
                      |+++++..|.+.+..     ...+.++.-|=     +|-.-.
T Consensus       155 ~v~~~f~~ia~~l~~-----~p~~~~ldEp~~~~~~~~ld~~  191 (215)
T PTZ00132        155 NFEKPFLWLARRLTN-----DPNLVFVGAPALAPEEIQIDPE  191 (215)
T ss_pred             CHHHHHHHHHHHHhh-----cccceecCCcccCCCccccCHH
Confidence            999988877655432     24567777776     664443

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=97.11  E-value=0.00073  Score=67.74  Aligned_cols=42  Identities=29%  Similarity=0.405  Sum_probs=28.7

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ++.+....|++.+... +..++.|+|+|-+|+|||||||+|++
T Consensus        16 ~~~~~~s~i~~~l~~~-~~~~l~IaV~G~sGsGKSSfINalrG   57 (376)
T PF05049_consen   16 NLQEVVSKIREALKDI-DNAPLNIAVTGESGSGKSSFINALRG   57 (376)
T ss_dssp             -HHHHHHHHHHHHHHH-HH--EEEEEEESTTSSHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHh-hcCceEEEEECCCCCCHHHHHHHHhC
Confidence            3444444555444322 24679999999999999999999987

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PLN03118 Rab family protein; Provisional

Probab=97.11  E-value=0.00081  Score=61.27  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ..++|.|||.+|||||||||+|........+|..|.+
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~   49 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVD   49 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeE
Confidence            3578999999999999999999987766667766754

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.10  E-value=0.00079  Score=55.00  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=21.3

Q ss_pred             EEEEeecCCCChhHHHHHhhccCcc
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      +|.++|.+||||||||++|.+....
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~   25 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFP   25 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCc
Confidence            4789999999999999999987765

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=97.10  E-value=0.00034  Score=59.05  Aligned_cols=24  Identities=21%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             EEEEeecCCCChhHHHHHhhccCc
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      +|.+||.||||||||+|+|.+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~   25 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI   25 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc
Confidence            478999999999999999998653

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.10  E-value=0.0014  Score=66.99  Aligned_cols=94  Identities=18%  Similarity=0.135  Sum_probs=65.0

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh---CCceEEEee
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE---YPSLAFHAS  280 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~---~p~~~f~vS  280 (355)
                      -++.+.++.|.-.|+||||......  ..+.+.-.....+..+|-|+||+||-.. ..++....+...   .+..++.+|
T Consensus        91 YEVSRSLAACEGalLvVDAsQGveA--QTlAN~YlAle~~LeIiPViNKIDLP~A-dpervk~eIe~~iGid~~dav~~S  167 (603)
T COG0481          91 YEVSRSLAACEGALLVVDASQGVEA--QTLANVYLALENNLEIIPVLNKIDLPAA-DPERVKQEIEDIIGIDASDAVLVS  167 (603)
T ss_pred             EEehhhHhhCCCcEEEEECccchHH--HHHHHHHHHHHcCcEEEEeeecccCCCC-CHHHHHHHHHHHhCCCcchheeEe
Confidence            3445578899999999999876432  2333322222257889999999998433 334444444443   245678899


Q ss_pred             ecCCCChHHHHHHHHHHHhh
Q 018454          281 INKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      |++|.|++++++.+.+..+.
T Consensus       168 AKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         168 AKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             cccCCCHHHHHHHHHhhCCC
Confidence            99999999999999887763

>cd04149 Arf6 Arf6 subfamily

Probab=97.08  E-value=0.0007  Score=59.57  Aligned_cols=37  Identities=14%  Similarity=0.308  Sum_probs=28.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      +.++|.++|.+||||||||++|.......+.|..|.+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~   44 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN   44 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccc
Confidence            4578999999999999999999876555444444544

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.0027  Score=55.63  Aligned_cols=96  Identities=21%  Similarity=0.246  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCC--CCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHH-----Hhhh
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDP--QGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRV-----LSKE  271 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp--~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~-----l~~~  271 (355)
                      +-.|+.   +.++.|.||+|||..|-  .+..-.++...+.+ +..+-.+++++||.|..-.....+....     ++. 
T Consensus        76 rPyWRc---Yy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~-  151 (182)
T KOG0072|consen   76 RPYWRC---YYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD-  151 (182)
T ss_pred             cHHHHH---HhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh-
Confidence            456776   66889999999999754  33333344444444 4467778999999998644332222222     222 


Q ss_pred             CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          272 YPSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       272 ~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ....+|..||.++.|++..+++|.+-++
T Consensus       152 r~~~Iv~tSA~kg~Gld~~~DWL~~~l~  179 (182)
T KOG0072|consen  152 RIWQIVKTSAVKGEGLDPAMDWLQRPLK  179 (182)
T ss_pred             heeEEEeeccccccCCcHHHHHHHHHHh
Confidence            2356788999999999999999986553

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.05  E-value=0.0037  Score=64.25  Aligned_cols=101  Identities=18%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCC----cchHHHHHHH-hhcCCC-cEEEEEeccCCCCh-hh-------H
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGT----RCHHLERHLK-EHCKHK-HMILLLNKCDLVPA-WA-------T  261 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s----~~~~l~~~L~-~~~~~k-~vILVlNK~DLvp~-~~-------~  261 (355)
                      +|| .++...+...+..+|.+|+|+|+.+....    ......+.+. ....+. ++|+++||+|+.+. +.       .
T Consensus        93 PGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~  171 (447)
T PLN00043         93 PGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIV  171 (447)
T ss_pred             CCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHH
Confidence            454 45666777788999999999999874211    0112222221 112456 46889999998732 11       2


Q ss_pred             HHHHHHHhhhC----CceEEEeeecCCCChH------------HHHHHHHHH
Q 018454          262 KGWLRVLSKEY----PSLAFHASINKSFGKG------------SLLSVLRQF  297 (355)
Q Consensus       262 ~~w~~~l~~~~----p~~~f~vSa~~~~Gi~------------~Ll~~L~q~  297 (355)
                      ++....+....    ...++.+|+.+|.|+.            .|++.|.++
T Consensus       172 ~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~i  223 (447)
T PLN00043        172 KEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQI  223 (447)
T ss_pred             HHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhhc
Confidence            22333333322    1446788999999873            477777654

>PRK12740 elongation factor G; Reviewed

Probab=97.05  E-value=0.0027  Score=68.20  Aligned_cols=54  Identities=20%  Similarity=0.166  Sum_probs=39.9

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp  257 (355)
                      +..++...+..+|++|+|+|+.+........+...+..  .++|+++|+||+|+..
T Consensus        73 ~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         73 FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence            44566677889999999999988664444444444443  4789999999999864

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=97.02  E-value=0.003  Score=67.54  Aligned_cols=89  Identities=20%  Similarity=0.240  Sum_probs=62.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh------------------hHHHHHHHHh-
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW------------------ATKGWLRVLS-  269 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~------------------~~~~w~~~l~-  269 (355)
                      -...||++|+|+|..+.+...-.+-.+.|+.  .+.|+|+.|||+|.+-.|                  ++.++..++. 
T Consensus       560 gsslC~~aIlvvdImhGlepqtiESi~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~  637 (1064)
T KOG1144|consen  560 GSSLCDLAILVVDIMHGLEPQTIESINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNN  637 (1064)
T ss_pred             cccccceEEEEeehhccCCcchhHHHHHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence            4578999999999987765544444556665  689999999999976322                  1222332221 


Q ss_pred             ------hh------C--------CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          270 ------KE------Y--------PSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       270 ------~~------~--------p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                            ++      |        .+.+++.||-+|.|+.+|+-+|.++.+
T Consensus       638 ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  638 IIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence                  11      0        134567899999999999999988766

>TIGR00101 ureG urease accessory protein UreG

Probab=97.01  E-value=0.0016  Score=59.70  Aligned_cols=78  Identities=17%  Similarity=0.187  Sum_probs=50.5

Q ss_pred             CCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcE--EEEEeccCCCCh--hhHHHHHHHHhhhCC-ceEEEeeecCCCCh
Q 018454          213 SDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM--ILLLNKCDLVPA--WATKGWLRVLSKEYP-SLAFHASINKSFGK  287 (355)
Q Consensus       213 sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~v--ILVlNK~DLvp~--~~~~~w~~~l~~~~p-~~~f~vSa~~~~Gi  287 (355)
                      +|.+|.|+|+.+......    .+ .   .+...  ++|+||+|+.+.  ...+...+.+....| ..+|.+|+++|.|+
T Consensus       113 ~~~~i~vvD~~~~~~~~~----~~-~---~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi  184 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR----KG-G---PGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGL  184 (199)
T ss_pred             hCcEEEEEEcchhhhhhh----hh-H---hHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence            477999999876443111    10 0   12334  899999999852  222222333333233 45788999999999


Q ss_pred             HHHHHHHHHHH
Q 018454          288 GSLLSVLRQFA  298 (355)
Q Consensus       288 ~~Ll~~L~q~~  298 (355)
                      ++++++|.+++
T Consensus       185 ~el~~~i~~~~  195 (199)
T TIGR00101       185 DTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHHhhc
Confidence            99999998765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK00007 elongation factor G; Reviewed

Probab=96.97  E-value=0.0026  Score=68.71  Aligned_cols=71  Identities=18%  Similarity=0.100  Sum_probs=51.8

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~  270 (355)
                      +|+. .+..++...+..+|++|+|+|+..........+..++..  .++|+|+++||+|+.... .....+.+.+
T Consensus        83 PG~~-~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~p~iv~vNK~D~~~~~-~~~~~~~i~~  153 (693)
T PRK00007         83 PGHV-DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKVPRIAFVNKMDRTGAD-FYRVVEQIKD  153 (693)
T ss_pred             CCcH-HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence            4443 344578888999999999999998877767777777665  578999999999998644 2333344433

>cd00879 Sar1 Sar1 subfamily

Probab=96.97  E-value=0.0007  Score=60.08  Aligned_cols=35  Identities=20%  Similarity=0.450  Sum_probs=27.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV  339 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG  339 (355)
                      +..+|+++|.+|||||||||+|.+.....+.|..|
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~   52 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLH   52 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccC
Confidence            46788999999999999999999866544444444

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=96.96  E-value=0.0017  Score=58.04  Aligned_cols=37  Identities=22%  Similarity=0.423  Sum_probs=29.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV  340 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt  340 (355)
                      ++.++|.++|.+||||||||+.+.........|..|.
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~   51 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGF   51 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCcccc
Confidence            4568999999999999999999976555555555554

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=96.95  E-value=0.0059  Score=55.32  Aligned_cols=87  Identities=10%  Similarity=-0.003  Sum_probs=56.6

Q ss_pred             hcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh-------------HHHHHHHHhhh-----
Q 018454          210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKE-----  271 (355)
Q Consensus       210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------~~~w~~~l~~~-----  271 (355)
                      +..+|++|+|.|.  +....+..+.+.+..  .++++++|+||+|+.....             .....+.+...     
T Consensus        78 ~~~~d~~l~v~~~--~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          78 FSEYDFFIIISST--RFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             ccCcCEEEEEeCC--CCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            5678999998653  345566667777765  3789999999999963211             11222222211     


Q ss_pred             -CCceEEEeeec--CCCChHHHHHHHHHHHhh
Q 018454          272 -YPSLAFHASIN--KSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       272 -~p~~~f~vSa~--~~~Gi~~Ll~~L~q~~~~  300 (355)
                       ....+|.+|+.  .++|+..|.+.|..-++.
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence             12356777887  578999999888776654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=96.94  E-value=0.0015  Score=69.36  Aligned_cols=85  Identities=25%  Similarity=0.202  Sum_probs=62.2

Q ss_pred             cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454          211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL  290 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L  290 (355)
                      +..|+||.|+||.+..  ++-.+-=.+.+  -++|+|+++|.+|...+....=-.+.+++...+.++..||++|.|+++|
T Consensus        80 ~~~D~ivnVvDAtnLe--RnLyltlQLlE--~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l  155 (653)
T COG0370          80 GKPDLIVNVVDATNLE--RNLYLTLQLLE--LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEEL  155 (653)
T ss_pred             CCCCEEEEEcccchHH--HHHHHHHHHHH--cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHH
Confidence            5679999999998753  22222222333  5899999999999877654433345666667777888999999999999


Q ss_pred             HHHHHHHHh
Q 018454          291 LSVLRQFAR  299 (355)
Q Consensus       291 l~~L~q~~~  299 (355)
                      ++.+.....
T Consensus       156 ~~~i~~~~~  164 (653)
T COG0370         156 KRAIIELAE  164 (653)
T ss_pred             HHHHHHhcc
Confidence            998876543

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.93  E-value=0.004  Score=56.96  Aligned_cols=78  Identities=17%  Similarity=0.118  Sum_probs=50.4

Q ss_pred             CEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHhhhCC-ceEEEeeecCCCChHHH
Q 018454          214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEYP-SLAFHASINKSFGKGSL  290 (355)
Q Consensus       214 DvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~~p-~~~f~vSa~~~~Gi~~L  290 (355)
                      +..+.|+|+.+....    +..+...  ..++.++|+||+|+++..  ......+.+....+ ..++.+|++++.|+++|
T Consensus       125 ~~~i~Vvd~~~~d~~----~~~~~~~--~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l  198 (207)
T TIGR00073       125 HMRVVLLSVTEGDDK----PLKYPGM--FKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEW  198 (207)
T ss_pred             CeEEEEEecCcccch----hhhhHhH--HhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHH
Confidence            445678887654322    1111111  246789999999998642  23344444544443 45788899999999999


Q ss_pred             HHHHHHH
Q 018454          291 LSVLRQF  297 (355)
Q Consensus       291 l~~L~q~  297 (355)
                      ++.+.++
T Consensus       199 ~~~i~~~  205 (207)
T TIGR00073       199 LEFLEGQ  205 (207)
T ss_pred             HHHHHHh
Confidence            9998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=96.89  E-value=0.007  Score=61.92  Aligned_cols=103  Identities=16%  Similarity=0.148  Sum_probs=70.3

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC---ChhhHHHHHHHHhhh-
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV---PAWATKGWLRVLSKE-  271 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv---p~~~~~~w~~~l~~~-  271 (355)
                      +|| ..+-.++.+++...|-||+||||.+.+...-..+.+--.+  .+.+.|+|+||+|--   |.++..+..+.|... 
T Consensus        76 PGH-ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~  152 (603)
T COG1217          76 PGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELG  152 (603)
T ss_pred             CCc-CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            444 2455788889999999999999998766555555433222  578899999999975   455555555555432 


Q ss_pred             -----CCceEEEeeecCCC----------ChHHHHHHHHHHHhhh
Q 018454          272 -----YPSLAFHASINKSF----------GKGSLLSVLRQFARLK  301 (355)
Q Consensus       272 -----~p~~~f~vSa~~~~----------Gi~~Ll~~L~q~~~~~  301 (355)
                           .-..++.+|+.+|+          .+..|++.|.++.+..
T Consensus       153 A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P  197 (603)
T COG1217         153 ATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP  197 (603)
T ss_pred             CChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence                 12335567887765          4677888888887643

>PRK13351 elongation factor G; Reviewed

Probab=96.87  E-value=0.006  Score=65.78  Aligned_cols=54  Identities=22%  Similarity=0.214  Sum_probs=40.6

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp  257 (355)
                      +..++...+..+|.+|+|+|+.+........+...+..  .++|+++|+||+|+..
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~  139 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEECCCCCC
Confidence            44566778899999999999988765444444444443  4789999999999875

>COG2262 HflX GTPases [General function prediction only]

Probab=96.83  E-value=0.00068  Score=68.09  Aligned_cols=28  Identities=39%  Similarity=0.585  Sum_probs=23.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      .--.|++|||+|+|||||+|+|.+..+.
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~  218 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVY  218 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCee
Confidence            4467899999999999999999976543

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=96.82  E-value=0.0023  Score=60.81  Aligned_cols=56  Identities=21%  Similarity=0.219  Sum_probs=41.6

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA  258 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~  258 (355)
                      .+..++...+..+|.+|+|+|+.+........+.+++..  .++|.++|+||+|+...
T Consensus        76 ~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D~~~~  131 (268)
T cd04170          76 DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCccCCC
Confidence            344567778889999999999988655444444444443  57899999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR00484 EF-G translation elongation factor EF-G

Probab=96.80  E-value=0.0035  Score=67.71  Aligned_cols=53  Identities=25%  Similarity=0.183  Sum_probs=41.8

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA  258 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~  258 (355)
                      .++...+..+|++|+|+|+.+........+..++..  .++|+++|+||+|+...
T Consensus        90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        90 VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence            356678889999999999998766555556665554  47899999999999854

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09866 hypothetical protein; Provisional

Probab=96.78  E-value=0.0025  Score=67.84  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=31.4

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ...++++|++|+|||||||+|.+..++.+++.|=+|
T Consensus        69 ~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~  104 (741)
T PRK09866         69 EMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTA  104 (741)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCccccCCCccccc
Confidence            478899999999999999999999988887666554

>KOG1249 consensus Predicted GTPases [General function prediction only]

Probab=96.71  E-value=0.002  Score=66.59  Aligned_cols=93  Identities=15%  Similarity=0.049  Sum_probs=61.9

Q ss_pred             CcEEEEEeccCCCChhhH----HHHHHHHhhhC----CceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecC
Q 018454          244 KHMILLLNKCDLVPAWAT----KGWLRVLSKEY----PSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYP  315 (355)
Q Consensus       244 k~vILVlNK~DLvp~~~~----~~w~~~l~~~~----p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~p  315 (355)
                      -.++.+.+++|+.++...    .-|.....+.+    -..+..+|+++.+|..+|+......     ++..+.|+.||.+
T Consensus       244 p~lVd~aT~~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~l~~~~~~~-----ag~~~~v~~vg~t  318 (572)
T KOG1249|consen  244 PKLVDRATISDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERDLLALETGD-----AGKAGPVAAVGRT  318 (572)
T ss_pred             cceeeeeecccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHHHHHHhhhhc-----cccccchHHhhhh
Confidence            457889999999875421    11221111111    0122345788888877777655432     3567889999999


Q ss_pred             CCChhHHHHHhhcc-----CccccCCCCCee
Q 018454          316 NVGKSSVINTLRTK-----NVILFFPASVVW  341 (355)
Q Consensus       316 NVGKSSLIN~Ll~~-----~~~~vs~iPGtT  341 (355)
                      |.|++++||++-..     ...+-+|.||||
T Consensus       319 ~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtT  349 (572)
T KOG1249|consen  319 FAGSEELINAMAKELHADVEALAEEPVPGTT  349 (572)
T ss_pred             hhccchhhhhhhhhhccchhccccCCCCccc
Confidence            99999999999753     246678999998

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=96.70  E-value=0.0097  Score=53.15  Aligned_cols=95  Identities=20%  Similarity=0.178  Sum_probs=61.3

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCc-c-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHH--HHHhh---h
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTR-C-HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWL--RVLSK---E  271 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~-~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~--~~l~~---~  271 (355)
                      +.+|+.   +.+++|.+|+|+|..|+.-.. + .++...+.. ...+.+++++.||.|+.+.-..+...  -.+..   .
T Consensus        74 r~~W~n---YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks  150 (185)
T KOG0073|consen   74 RSYWKN---YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKS  150 (185)
T ss_pred             HHHHHH---hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccc
Confidence            455655   779999999999998875321 1 233344433 23468999999999997543222221  11222   2


Q ss_pred             CCceEEEeeecCCCChHHHHHHHHHH
Q 018454          272 YPSLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       272 ~p~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      .-..++.+|+.+|.++.+-+++|..-
T Consensus       151 ~~~~l~~cs~~tge~l~~gidWL~~~  176 (185)
T KOG0073|consen  151 HHWRLVKCSAVTGEDLLEGIDWLCDD  176 (185)
T ss_pred             cCceEEEEeccccccHHHHHHHHHHH
Confidence            33557788999998888877776543

>COG3596 Predicted GTPase [General function prediction only]

Probab=96.68  E-value=0.0013  Score=63.10  Aligned_cols=36  Identities=31%  Similarity=0.373  Sum_probs=30.3

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhccCccccCCCC
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS  338 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP  338 (355)
                      ...++.|.++|.+|+|||||||+|.......|+-+|
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg   71 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVG   71 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecc
Confidence            357899999999999999999999977666666555

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=96.63  E-value=0.0014  Score=70.07  Aligned_cols=46  Identities=17%  Similarity=0.169  Sum_probs=34.6

Q ss_pred             HHHhhhccccceEEEEeecCCCChhHHHHHhhccCcccc----------CCCCCee
Q 018454          296 QFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILF----------FPASVVW  341 (355)
Q Consensus       296 q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v----------s~iPGtT  341 (355)
                      ++...+..+..++|++||.+|+|||||+|+|+......+          +..+|+|
T Consensus        14 ~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~t   69 (632)
T PRK05506         14 AYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQ   69 (632)
T ss_pred             HHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCC
Confidence            333334456778999999999999999999998665544          3467876

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.59  E-value=0.012  Score=59.33  Aligned_cols=85  Identities=28%  Similarity=0.346  Sum_probs=53.5

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCC-------CCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH---HHH-
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQ-------GTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW---LRV-  267 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~-------~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w---~~~-  267 (355)
                      +.++.....-+..+|+.|+|+||+++.       +... +++  +|.....-.++|+++||+|+++ |..+++   +.. 
T Consensus        96 rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~--~La~tlGi~~lIVavNKMD~v~-wde~rf~ei~~~v  172 (428)
T COG5256          96 RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA--FLARTLGIKQLIVAVNKMDLVS-WDEERFEEIVSEV  172 (428)
T ss_pred             HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH--HHHHhcCCceEEEEEEcccccc-cCHHHHHHHHHHH
Confidence            667777777889999999999999873       2111 111  1222113467999999999987 433222   222 


Q ss_pred             --Hhhh--CC---ceEEEeeecCCCCh
Q 018454          268 --LSKE--YP---SLAFHASINKSFGK  287 (355)
Q Consensus       268 --l~~~--~p---~~~f~vSa~~~~Gi  287 (355)
                        |.+.  +.   ...+++|+.+|.++
T Consensus       173 ~~l~k~~G~~~~~v~FIPiSg~~G~Nl  199 (428)
T COG5256         173 SKLLKMVGYNPKDVPFIPISGFKGDNL  199 (428)
T ss_pred             HHHHHHcCCCccCCeEEecccccCCcc
Confidence              2222  22   34678899988876

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.58  E-value=0.0043  Score=60.26  Aligned_cols=53  Identities=23%  Similarity=0.288  Sum_probs=41.7

Q ss_pred             CcEEEEEeccCCCCh--hhHHHHHHHHhhhCC-ceEEEeeecCCCChHHHHHHHHH
Q 018454          244 KHMILLLNKCDLVPA--WATKGWLRVLSKEYP-SLAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       244 k~vILVlNK~DLvp~--~~~~~w~~~l~~~~p-~~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      ..-++|+||+||++.  ...+...+.+....| ..+|.+|++++.|+++|+++|.+
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            456999999999973  345556666666665 45788899999999999999875

>smart00053 DYNc Dynamin, GTPase

Probab=96.54  E-value=0.011  Score=56.05  Aligned_cols=67  Identities=15%  Similarity=0.161  Sum_probs=48.7

Q ss_pred             HHHHHHHhhhc-CCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh
Q 018454          201 RIWGELYKVID-SSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE  271 (355)
Q Consensus       201 ri~~el~kvi~-~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~  271 (355)
                      .+.+.+..+++ ..++||+|+|++..+...+ ..+.+++..  .++++|+|+||+|++.+..  .|.+.+...
T Consensus       150 ~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~D~~~~~~--~~~~~~~~~  218 (240)
T smart00053      150 QIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKLDLMDEGT--DARDILENK  218 (240)
T ss_pred             HHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECCCCCCccH--HHHHHHhCC
Confidence            44456778888 5579999999986655544 466666665  5789999999999987542  277766554

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=96.51  E-value=0.0071  Score=55.21  Aligned_cols=57  Identities=21%  Similarity=0.251  Sum_probs=37.2

Q ss_pred             HHHHHHhhhcCC-CEEEEEecCCCCCCCcchHHHHHH----Hh---hcCCCcEEEEEeccCCCChh
Q 018454          202 IWGELYKVIDSS-DVVVQVLDARDPQGTRCHHLERHL----KE---HCKHKHMILLLNKCDLVPAW  259 (355)
Q Consensus       202 i~~el~kvi~~s-DvVL~VvDardp~~s~~~~l~~~L----~~---~~~~k~vILVlNK~DLvp~~  259 (355)
                      +...+...+..+ +.||+|+|+.+.... ...+..++    ..   ...+.|+++|+||+||....
T Consensus        61 ~~~~~~~~~~~~~~~vV~VvD~~~~~~~-~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~  125 (203)
T cd04105          61 LRDKLLETLKNSAKGIVFVVDSATFQKN-LKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK  125 (203)
T ss_pred             HHHHHHHHHhccCCEEEEEEECccchhH-HHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence            344555667777 999999999886422 12222222    21   12479999999999997543

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=96.51  E-value=0.0086  Score=59.45  Aligned_cols=91  Identities=15%  Similarity=0.130  Sum_probs=55.2

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHh---hh---CCceEE
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLS---KE---YPSLAF  277 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~---~~---~p~~~f  277 (355)
                      ..--...||+.|++||||....+.... ..+|.....=+++|+.+||+||+.-.  ..+.....|.   ..   .....+
T Consensus       103 MaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~I  181 (431)
T COG2895         103 MATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFI  181 (431)
T ss_pred             hhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence            334568899999999999765432211 11222222457899999999999632  2333333221   22   234567


Q ss_pred             EeeecCCCCh------------HHHHHHHHHH
Q 018454          278 HASINKSFGK------------GSLLSVLRQF  297 (355)
Q Consensus       278 ~vSa~~~~Gi------------~~Ll~~L~q~  297 (355)
                      ++||..|.++            ..|++.|...
T Consensus       182 PiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v  213 (431)
T COG2895         182 PISALLGDNVVSKSENMPWYKGPTLLEILETV  213 (431)
T ss_pred             echhccCCcccccccCCCcccCccHHHHHhhc
Confidence            7898887765            3567766644

>PLN03110 Rab GTPase; Provisional

Probab=96.50  E-value=0.0052  Score=56.51  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=27.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc-ccCCCCCe
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPASVV  340 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iPGt  340 (355)
                      ..++|.+||.+||||||||++|.+.... ...|..|.
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~   47 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGV   47 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeE
Confidence            3578999999999999999999986643 23343443

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=96.47  E-value=0.007  Score=53.81  Aligned_cols=91  Identities=18%  Similarity=0.173  Sum_probs=58.8

Q ss_pred             hcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454          210 IDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ...++-+|+|.|..|-.+.  ..+-.|+.+   . .....+++|.||+||-... +...-...+.+.-....++.||+.+
T Consensus        83 YRgSnGalLVyDITDrdSF--qKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N  160 (218)
T KOG0088|consen   83 YRGSNGALLVYDITDRDSF--QKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN  160 (218)
T ss_pred             EeCCCceEEEEeccchHHH--HHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence            3568899999999886543  344445443   1 2346789999999995432 2222222232222344567899999


Q ss_pred             CChHHHHHHHHHHHhhhc
Q 018454          285 FGKGSLLSVLRQFARLKS  302 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~  302 (355)
                      .|+.+|+..|.+..-++.
T Consensus       161 ~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  161 VGISELFESLTAKMIEHS  178 (218)
T ss_pred             cCHHHHHHHHHHHHHHHh
Confidence            999999998877665543

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=96.46  E-value=0.0066  Score=53.93  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .+.++|.++|.+|+||||+++.|.......+.|.-|..
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~   49 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN   49 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCcccccc
Confidence            57899999999999999999999988777788877765

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=96.44  E-value=0.0077  Score=44.57  Aligned_cols=42  Identities=26%  Similarity=0.420  Sum_probs=26.1

Q ss_pred             CCEEEEEecCCCCCCCcc---hHHHHHHHhhcCCCcEEEEEeccC
Q 018454          213 SDVVVQVLDARDPQGTRC---HHLERHLKEHCKHKHMILLLNKCD  254 (355)
Q Consensus       213 sDvVL~VvDardp~~s~~---~~l~~~L~~~~~~k~vILVlNK~D  254 (355)
                      .++|++++|...--|..-   ..+.+.++....++|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            489999999875444321   245566666667999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.41  E-value=0.0084  Score=52.75  Aligned_cols=89  Identities=13%  Similarity=0.189  Sum_probs=61.7

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..++.+|++.|..+..+.  ..+..|+-.    ...+.++|+|.||||+-.+.++ .+-...+..+.....|..|++
T Consensus        89 ayyRgamgfiLmyDitNeeSf--~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK  166 (193)
T KOG0093|consen   89 AYYRGAMGFILMYDITNEESF--NSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAK  166 (193)
T ss_pred             HHhhccceEEEEEecCCHHHH--HHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccc
Confidence            456789999999999875432  234455432    1247899999999999765432 233344445555567888999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      .+.+++++++.|....
T Consensus       167 ~NinVk~~Fe~lv~~I  182 (193)
T KOG0093|consen  167 ENINVKQVFERLVDII  182 (193)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            9999999988776543

>PLN00223 ADP-ribosylation factor; Provisional

Probab=96.41  E-value=0.0045  Score=55.29  Aligned_cols=38  Identities=18%  Similarity=0.372  Sum_probs=30.1

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .+..+|.++|.+|||||||++.|.......+.|..|..
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~   52 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN   52 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccccCCccee
Confidence            34578999999999999999999876555555666654

>cd04169 RF3 RF3 subfamily

Probab=96.38  E-value=0.016  Score=55.40  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=39.7

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA  258 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~  258 (355)
                      +..+++..+..+|.+|+|+|+.+........+.++...  .++|+++++||+|+...
T Consensus        84 f~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~~~P~iivvNK~D~~~a  138 (267)
T cd04169          84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--cCCCEEEEEECCccCCC
Confidence            34556677889999999999987654333344444432  57999999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=96.31  E-value=0.0054  Score=54.20  Aligned_cols=35  Identities=17%  Similarity=0.368  Sum_probs=26.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV  339 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG  339 (355)
                      +.++|.++|.+||||||||+.|........-|..|
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~   46 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIG   46 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccc
Confidence            45889999999999999999997554444334334

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=96.26  E-value=0.026  Score=57.58  Aligned_cols=89  Identities=27%  Similarity=0.331  Sum_probs=57.3

Q ss_pred             HHhhhc-CCCEEEEEe-cCC------CCCCCcchHHHHHHHhhcCCCcEEEEEeccC-CCChhhHHHHHHHHhhhCCceE
Q 018454          206 LYKVID-SSDVVVQVL-DAR------DPQGTRCHHLERHLKEHCKHKHMILLLNKCD-LVPAWATKGWLRVLSKEYPSLA  276 (355)
Q Consensus       206 l~kvi~-~sDvVL~Vv-Dar------dp~~s~~~~l~~~L~~~~~~k~vILVlNK~D-Lvp~~~~~~w~~~l~~~~p~~~  276 (355)
                      +.++|. .+|+.|+|. |+.      +........+...|++  .++|+|+|+||+| +.+.  ...+.+.+...|.+.+
T Consensus       137 T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~--~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpv  212 (492)
T TIGR02836       137 TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE--LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPV  212 (492)
T ss_pred             HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh--cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCce
Confidence            456887 999999999 884      3333334455555555  6899999999999 4443  3445556666665545


Q ss_pred             EEeeecCCCChHHHHHHHHHHHh
Q 018454          277 FHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       277 f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +.+|+. ....+++...|++.+-
T Consensus       213 l~v~c~-~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       213 LAMDVE-SMRESDILSVLEEVLY  234 (492)
T ss_pred             EEEEHH-HcCHHHHHHHHHHHHh
Confidence            555653 2455566666665554

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.02  Score=50.51  Aligned_cols=96  Identities=17%  Similarity=0.114  Sum_probs=62.3

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCC-CcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceE
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKH-KHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLA  276 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~-k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~  276 (355)
                      .|+..-+..+..++..+|+|.|..-.++..| +++.+.|.....+ .--|+|.||+|+... ++....-+.+++..-...
T Consensus        67 erfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyf  146 (213)
T KOG0095|consen   67 ERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYF  146 (213)
T ss_pred             HHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhh
Confidence            3445555667788999999999987666655 5555555442222 334899999999765 333444444544422223


Q ss_pred             EEeeecCCCChHHHHHHHH
Q 018454          277 FHASINKSFGKGSLLSVLR  295 (355)
Q Consensus       277 f~vSa~~~~Gi~~Ll~~L~  295 (355)
                      +..|++...+++.|+..+.
T Consensus       147 letsakea~nve~lf~~~a  165 (213)
T KOG0095|consen  147 LETSAKEADNVEKLFLDLA  165 (213)
T ss_pred             hhhcccchhhHHHHHHHHH
Confidence            4569999999998876553

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.22  E-value=0.0092  Score=53.77  Aligned_cols=97  Identities=18%  Similarity=0.172  Sum_probs=65.0

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCC-cc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh--hhC--
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGT-RC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS--KEY--  272 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s-~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~--~~~--  272 (355)
                      +.+|...|   ..+..||+|+||.|+.-. .+ ..+++.+.. ...+.|+++.+||-|+-......+....+.  +..  
T Consensus        83 rSlw~~yY---~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~  159 (197)
T KOG0076|consen   83 RSLWKKYY---WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPR  159 (197)
T ss_pred             HHHHHHHH---HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCC
Confidence            55676644   678999999999985321 11 223333332 236899999999999987766665555554  221  


Q ss_pred             Cc-eEEEeeecCCCChHHHHHHHHHHHh
Q 018454          273 PS-LAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       273 p~-~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++ ...++|+.+|.|+++-+.++..-.+
T Consensus       160 rd~~~~pvSal~gegv~egi~w~v~~~~  187 (197)
T KOG0076|consen  160 RDNPFQPVSALTGEGVKEGIEWLVKKLE  187 (197)
T ss_pred             ccCccccchhhhcccHHHHHHHHHHHHh
Confidence            22 2346799999999998888876654

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=96.18  E-value=0.0068  Score=61.65  Aligned_cols=35  Identities=31%  Similarity=0.343  Sum_probs=30.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc----Ccc-----------ccCCCCC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK----NVI-----------LFFPASV  339 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~----~~~-----------~vs~iPG  339 (355)
                      ..+-+|++|.-|+|||||||++.+.    ...           -+++.||
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~G   65 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAG   65 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCC
Confidence            4588999999999999999999997    555           6788899

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.18  E-value=0.0064  Score=49.85  Aligned_cols=48  Identities=33%  Similarity=0.497  Sum_probs=37.3

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEec
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK  252 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK  252 (355)
                      .+.++.+.+..+|++++|+|+.++.......+.+++.   .++|+++|+||
T Consensus        69 ~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   69 EIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             HHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence            5566777889999999999988854444456666664   57999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=96.17  E-value=0.0029  Score=62.08  Aligned_cols=23  Identities=39%  Similarity=0.690  Sum_probs=20.5

Q ss_pred             ceEEEEeecCCCChhHHHHHhhc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .-.|.+|||+|+|||||||+|.+
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~  200 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTK  200 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHh
Confidence            45678999999999999999985

>COG1084 Predicted GTPase [General function prediction only]

Probab=96.13  E-value=0.031  Score=55.04  Aligned_cols=96  Identities=17%  Similarity=0.174  Sum_probs=63.6

Q ss_pred             HHHHHHHhhhcC-CCEEEEEecCCCCCCCc---chHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceE
Q 018454          201 RIWGELYKVIDS-SDVVVQVLDARDPQGTR---CHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLA  276 (355)
Q Consensus       201 ri~~el~kvi~~-sDvVL~VvDardp~~s~---~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~  276 (355)
                      .+-+++.-++.. .++||+++|.+.--+-.   -.+|.+.++... ..|+++|+||+|+...+..++....+........
T Consensus       235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~  313 (346)
T COG1084         235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-KAPIVVVINKIDIADEEKLEEIEASVLEEGGEEP  313 (346)
T ss_pred             HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-CCCeEEEEecccccchhHHHHHHHHHHhhccccc
Confidence            344555545543 48999999987533321   234555555543 4899999999999977766666655655554545


Q ss_pred             EEeeecCCCChHHHHHHHHHH
Q 018454          277 FHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       277 f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      ..+++..+.+.+.+...+...
T Consensus       314 ~~~~~~~~~~~d~~~~~v~~~  334 (346)
T COG1084         314 LKISATKGCGLDKLREEVRKT  334 (346)
T ss_pred             cceeeeehhhHHHHHHHHHHH
Confidence            566888888888777766554

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=96.11  E-value=0.031  Score=51.18  Aligned_cols=91  Identities=18%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCC-hhhHHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVP-AWATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|..++|.+..|..+..+ ..+...|..  .....|+|+|.||+||.. ..+..+--..+...+....+.+||+.+
T Consensus        71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~  150 (196)
T KOG0395|consen   71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLN  150 (196)
T ss_pred             hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCC
Confidence            5777899999999988765433 233333322  123469999999999976 233222233444445455677899999


Q ss_pred             CChHHHHHHHHHHHh
Q 018454          285 FGKGSLLSVLRQFAR  299 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~  299 (355)
                      .++++++..|.....
T Consensus       151 ~~v~~~F~~L~r~~~  165 (196)
T KOG0395|consen  151 YNVDEVFYELVREIR  165 (196)
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999988766554

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.09  E-value=0.035  Score=55.16  Aligned_cols=97  Identities=15%  Similarity=0.186  Sum_probs=58.4

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCC---CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHH----HHHH--
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ---GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK----GWLR--  266 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~---~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~----~w~~--  266 (355)
                      +||+. .++-+.--..-.|+.++|+|+....   ...|..+-+.     ..+.+|+|+||+|++|+....    +...  
T Consensus        78 PGHas-LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-----~c~klvvvinkid~lpE~qr~ski~k~~kk~  151 (522)
T KOG0461|consen   78 PGHAS-LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-----LCKKLVVVINKIDVLPENQRASKIEKSAKKV  151 (522)
T ss_pred             CCcHH-HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-----hccceEEEEeccccccchhhhhHHHHHHHHH
Confidence            45542 4444444455669999999987543   3334333322     247899999999999974322    2222  


Q ss_pred             --HHhhh---CCceEEEeeecCC----CChHHHHHHHHHHH
Q 018454          267 --VLSKE---YPSLAFHASINKS----FGKGSLLSVLRQFA  298 (355)
Q Consensus       267 --~l~~~---~p~~~f~vSa~~~----~Gi~~Ll~~L~q~~  298 (355)
                        .+...   ....++.+|+..|    .++.+|.+.|+...
T Consensus       152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence              22221   1245677899988    66777777776544

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.04  E-value=0.012  Score=52.69  Aligned_cols=98  Identities=26%  Similarity=0.315  Sum_probs=64.3

Q ss_pred             chHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChh--hHHHHHHHHhhh
Q 018454          197 GQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKE  271 (355)
Q Consensus       197 ~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~  271 (355)
                      .|+++.|++   .+..+|.||+++|+-|..-..+  .+++..+.- .....|++++.||+|.....  ..-.|...+...
T Consensus        75 ~qArr~wkd---yf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~  151 (193)
T KOG0077|consen   75 LQARRVWKD---YFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNF  151 (193)
T ss_pred             HHHHHHHHH---HHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHH
Confidence            356777776   7888999999999988753222  233333332 23579999999999986532  223344333221


Q ss_pred             --------------CCceEEEeeecCCCChHHHHHHHHHH
Q 018454          272 --------------YPSLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       272 --------------~p~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                                    .|..+|.+|...+.|..+-+.+|.++
T Consensus       152 t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  152 TTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             hcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence                          25668889988888877777776654

>CHL00071 tufA elongation factor Tu

Probab=96.03  E-value=0.0087  Score=60.66  Aligned_cols=27  Identities=19%  Similarity=0.452  Sum_probs=24.4

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhcc
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..++|+++|.+|+|||||+|+|++.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~   35 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMT   35 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            356799999999999999999999975

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.01  E-value=0.02  Score=51.80  Aligned_cols=91  Identities=18%  Similarity=0.126  Sum_probs=59.6

Q ss_pred             hhcCCCEEEEEecCCCCCC--CcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEeee
Q 018454          209 VIDSSDVVVQVLDARDPQG--TRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHASI  281 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~--s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~vSa  281 (355)
                      +..+.+.||+|||+.|..-  ..-.++.+.+.. +..+.|+++..||.|+-..-...+.-+.+.-.    .+..+..++|
T Consensus        81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a  160 (181)
T KOG0070|consen   81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA  160 (181)
T ss_pred             hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence            6789999999999988642  111233333333 22578899999999986433333333333211    3445566789


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      .+|.|+.+.+++|.+.+.
T Consensus       161 ~~G~GL~egl~wl~~~~~  178 (181)
T KOG0070|consen  161 ISGEGLYEGLDWLSNNLK  178 (181)
T ss_pred             cccccHHHHHHHHHHHHh
Confidence            999999999999887653

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=95.99  E-value=0.0063  Score=58.62  Aligned_cols=38  Identities=29%  Similarity=0.264  Sum_probs=30.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcc--ccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVI--LFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~--~vs~iPGtT  341 (355)
                      ++...+.++|.+|||||||||.|.+.+..  +.++-||-|
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T  173 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT  173 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc
Confidence            34578899999999999999999986643  345578876

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=95.95  E-value=0.011  Score=58.01  Aligned_cols=94  Identities=17%  Similarity=0.119  Sum_probs=64.2

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc-C----CCcEEEEEeccCCCChhhHHHHHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC-K----HKHMILLLNKCDLVPAWATKGWLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~-~----~k~vILVlNK~DLvp~~~~~~w~~~l~  269 (355)
                      +.+....++.+.+-+..||++|||+|..+|....- ..++.-+.... +    ....|=|-||+|..+.....       
T Consensus       241 P~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-------  313 (410)
T KOG0410|consen  241 PIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-------  313 (410)
T ss_pred             cHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-------
Confidence            55667889999999999999999999999975432 23444444310 1    12245577888876543211       


Q ss_pred             hhCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454          270 KEYPSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       270 ~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                        -+...+.+||.+|.|+++|++.+..-.
T Consensus       314 --E~n~~v~isaltgdgl~el~~a~~~kv  340 (410)
T KOG0410|consen  314 --EKNLDVGISALTGDGLEELLKAEETKV  340 (410)
T ss_pred             --ccCCccccccccCccHHHHHHHHHHHh
Confidence              122245679999999999999887554

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=95.92  E-value=0.012  Score=54.20  Aligned_cols=38  Identities=18%  Similarity=0.173  Sum_probs=29.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc-cccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV-ILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-~~vs~iPGtT  341 (355)
                      ...++|.+||.+||||||||+++..... -...|..|.+
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~   49 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE   49 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCcccee
Confidence            4568999999999999999999876543 3456666655

>PRK07560 elongation factor EF-2; Reviewed

Probab=95.90  E-value=0.031  Score=60.92  Aligned_cols=53  Identities=19%  Similarity=0.288  Sum_probs=40.7

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      +..++...+..+|.+|+|+|+..........+.+....  .+.|.|+++||+|+.
T Consensus       100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--~~~~~iv~iNK~D~~  152 (731)
T PRK07560        100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--ERVKPVLFINKVDRL  152 (731)
T ss_pred             hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--cCCCeEEEEECchhh
Confidence            45677788899999999999988765555555555433  367889999999986

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=95.87  E-value=0.029  Score=62.04  Aligned_cols=58  Identities=17%  Similarity=0.186  Sum_probs=47.5

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      +|| ..+..++...+..+|.+|+|+|+.++.......+.+.+..  .++|+|+++||+|+.
T Consensus       106 PGh-~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--~~~p~i~~iNK~D~~  163 (843)
T PLN00116        106 PGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCH-HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--CCCCEEEEEECCccc
Confidence            565 5567778888999999999999998877666666666654  578999999999998

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.81  E-value=0.027  Score=51.35  Aligned_cols=93  Identities=15%  Similarity=0.124  Sum_probs=62.6

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCc
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPS  274 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~  274 (355)
                      .++..-+......+.-+|+|.|...-.+.  .+|..+|..   + ..+.-++|+.||+||.... +..+--+.+.+++..
T Consensus        66 e~frsv~~syYr~a~GalLVydit~r~sF--~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL  143 (216)
T KOG0098|consen   66 ESFRSVTRSYYRGAAGALLVYDITRRESF--NHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL  143 (216)
T ss_pred             HHHHHHHHHHhccCcceEEEEEccchhhH--HHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc
Confidence            44455555677888889999998654322  355556543   2 3678889999999997532 223333445555666


Q ss_pred             eEEEeeecCCCChHHHHHHH
Q 018454          275 LAFHASINKSFGKGSLLSVL  294 (355)
Q Consensus       275 ~~f~vSa~~~~Gi~~Ll~~L  294 (355)
                      +.+..||+++.|+++.+.-.
T Consensus       144 ifmETSakt~~~VEEaF~nt  163 (216)
T KOG0098|consen  144 IFMETSAKTAENVEEAFINT  163 (216)
T ss_pred             eeehhhhhhhhhHHHHHHHH
Confidence            67788999999999876643

>TIGR00750 lao LAO/AO transport system ATPase

Probab=95.81  E-value=0.064  Score=52.09  Aligned_cols=85  Identities=16%  Similarity=0.120  Sum_probs=52.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH-------HHHHhhh---CCceEEE
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------LRVLSKE---YPSLAFH  278 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w-------~~~l~~~---~p~~~f~  278 (355)
                      ++..+|.+++|.+   |...  .++..+... ...++.++|+||+|+.+.......       ...+...   ....++.
T Consensus       144 i~~~aD~i~vv~~---~~~~--~el~~~~~~-l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~  217 (300)
T TIGR00750       144 IANMADTFVVVTI---PGTG--DDLQGIKAG-LMEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLT  217 (300)
T ss_pred             HHHhhceEEEEec---CCcc--HHHHHHHHH-HhhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEE
Confidence            5677899888853   3322  223333221 135888999999999875421110       1111111   1123688


Q ss_pred             eeecCCCChHHHHHHHHHHHh
Q 018454          279 ASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +|+.++.|+++|++.|.++..
T Consensus       218 iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       218 TSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             EEccCCCCHHHHHHHHHHHHH
Confidence            999999999999999987643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=95.79  E-value=0.0056  Score=63.36  Aligned_cols=30  Identities=23%  Similarity=0.216  Sum_probs=25.7

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      .+..++|.+||.+|+|||||+++|+.....
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~   53 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQ   53 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCC
Confidence            467799999999999999999999865433

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=95.79  E-value=0.056  Score=52.27  Aligned_cols=83  Identities=18%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             CEEEEEecCCCC--CCCcchHHH---HHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-----------------
Q 018454          214 DVVVQVLDARDP--QGTRCHHLE---RHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-----------------  271 (355)
Q Consensus       214 DvVL~VvDardp--~~s~~~~l~---~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-----------------  271 (355)
                      -+|++|+|.-..  +.++-..+.   .++-+  ...|+|+|+||+|+....-..+|+..+...                 
T Consensus       149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~  226 (366)
T KOG1532|consen  149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTR  226 (366)
T ss_pred             eEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhh
Confidence            478999997422  112111111   12222  468999999999999887777787655321                 


Q ss_pred             ---------C-CceEEEeeecCCCChHHHHHHHHHHH
Q 018454          272 ---------Y-PSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       272 ---------~-p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                               | ..-.+-+|+.+|.|.++++..+.+..
T Consensus       227 SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v  263 (366)
T KOG1532|consen  227 SMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV  263 (366)
T ss_pred             hHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence                     0 11234568888888888777665443

>PTZ00416 elongation factor 2; Provisional

Probab=95.75  E-value=0.019  Score=63.41  Aligned_cols=58  Identities=17%  Similarity=0.238  Sum_probs=47.1

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      +|+ ..+..++...+..+|.+|+|+|+.+........+.+.+..  .++|+|+++||+|+.
T Consensus       100 PG~-~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--~~~p~iv~iNK~D~~  157 (836)
T PTZ00416        100 PGH-VDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--ERIRPVLFINKVDRA  157 (836)
T ss_pred             CCH-HhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--cCCCEEEEEEChhhh
Confidence            455 3466778889999999999999998877766677666654  468999999999997

>cd01882 BMS1 Bms1

Probab=95.64  E-value=0.01  Score=55.26  Aligned_cols=37  Identities=24%  Similarity=0.299  Sum_probs=29.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc-CccccCCCCCe
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK-NVILFFPASVV  340 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~-~~~~vs~iPGt  340 (355)
                      ..+..|+++|.||+|||||+|+|.+. ...+++.++|+
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~   74 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP   74 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc
Confidence            45677899999999999999999975 44556666774

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>smart00053 DYNc Dynamin, GTPase

Probab=95.62  E-value=0.03  Score=53.01  Aligned_cols=43  Identities=26%  Similarity=0.320  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHH-hhh--ccccceEEEEeecCCCChhHHHHHhhccC
Q 018454          288 GSLLSVLRQFA-RLK--SDKQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       288 ~~Ll~~L~q~~-~~~--~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      -.|++.|.++. ...  ..-..-.+++||-+++||||+||+|.+..
T Consensus         5 ~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~   50 (240)
T smart00053        5 IPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRD   50 (240)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCC
Confidence            34566665554 221  11233468999999999999999999865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.59  E-value=0.031  Score=48.88  Aligned_cols=96  Identities=19%  Similarity=0.193  Sum_probs=63.5

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCC--CCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CC
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQ--GTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YP  273 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~--~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p  273 (355)
                      ..|+.   +...+..+|+|+|+.+-.  ...-.++.+.|.. +....++++..||-||-......+..+++.-+    .+
T Consensus        76 plWrh---Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~  152 (180)
T KOG0071|consen   76 PLWRH---YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRN  152 (180)
T ss_pred             HHHHh---hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCc
Confidence            34544   567788999999987642  1112234444443 34567889999999997654445555555322    35


Q ss_pred             ceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          274 SLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ..+..+++.++.|+.+-+.+|.+.+.
T Consensus       153 W~vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  153 WYVQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             cEeeccccccchhHHHHHHHHHhhcc
Confidence            66778899999999888888877653

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=95.56  E-value=0.095  Score=47.19  Aligned_cols=99  Identities=15%  Similarity=0.142  Sum_probs=61.4

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcC---CCcEEEEEeccCCCChhhHHHHH-------HHHhh
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCK---HKHMILLLNKCDLVPAWATKGWL-------RVLSK  270 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~---~k~vILVlNK~DLvp~~~~~~w~-------~~l~~  270 (355)
                      .+.+.+....+..|+||+|+|+.+ ....+..+.+.+.+...   -+++|+|+|++|-+.....+.|+       ..+-+
T Consensus        72 ~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~  150 (196)
T cd01852          72 EIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLE  150 (196)
T ss_pred             HHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHH
Confidence            344444455678899999999988 55556666666654221   27899999999987654333222       22222


Q ss_pred             hCCc--eEEEe---eecCCCChHHHHHHHHHHHhh
Q 018454          271 EYPS--LAFHA---SINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       271 ~~p~--~~f~v---Sa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      .+..  ..|.-   |+..+.++.+|++.+.+..++
T Consensus       151 ~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         151 KCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             HhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            2221  12211   245667888899988888764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.56  E-value=0.015  Score=50.95  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=27.5

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.++.++.|..++.......+-.+.++|.+|+|||+|++.+...
T Consensus         4 gR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~   47 (185)
T PF13191_consen    4 GREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR   47 (185)
T ss_dssp             T-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            66677777777664223345567899999999999999998753

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=95.52  E-value=0.018  Score=54.60  Aligned_cols=56  Identities=23%  Similarity=0.258  Sum_probs=40.9

Q ss_pred             CCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccc-------cCCCCCee
Q 018454          284 SFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVIL-------FFPASVVW  341 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~-------vs~iPGtT  341 (355)
                      -.|++.+++.++.-+-  ..+-.-.|++||.++.|||||||+|-..++..       .-|+|-||
T Consensus        26 yvGidtI~~Qm~~k~m--k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~   88 (336)
T KOG1547|consen   26 YVGIDTIIEQMRKKTM--KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTT   88 (336)
T ss_pred             cccHHHHHHHHHHHHH--hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceE
Confidence            4589999988875442  22345789999999999999999998765443       12556665

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.51  E-value=0.021  Score=53.88  Aligned_cols=94  Identities=16%  Similarity=0.189  Sum_probs=47.4

Q ss_pred             HHHHhhhc--CCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChh--hHHHHHH---------
Q 018454          204 GELYKVID--SSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAW--ATKGWLR---------  266 (355)
Q Consensus       204 ~el~kvi~--~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~--~~~~w~~---------  266 (355)
                      ..+.+.+.  ..=++|+++|+.-... ....+...+..    ..-+.|.|.|+||+||++..  ...+|..         
T Consensus       112 ~~i~~~L~~~~~~~~v~LvD~~~~~~-~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~  190 (238)
T PF03029_consen  112 RKIVERLQKNGRLVVVFLVDSSFCSD-PSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLL  190 (238)
T ss_dssp             HHHHHTSSS----EEEEEE-GGG-SS-HHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHHhhhcceEEEEEEecccccC-hhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHH
Confidence            34444444  3457899999874422 11122221111    11368999999999999832  1222211         


Q ss_pred             -----HH----hh---hC-Cc-eEEEeeecCCCChHHHHHHHHHHH
Q 018454          267 -----VL----SK---EY-PS-LAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       267 -----~l----~~---~~-p~-~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                           .+    ..   .+ .. ..+.+|+.++.|+++|+..+.+..
T Consensus       191 ~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  191 ESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence                 11    11   12 23 456789999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=95.51  E-value=0.031  Score=48.50  Aligned_cols=96  Identities=18%  Similarity=0.234  Sum_probs=62.8

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCC-cchHHHHHHHhhc-CCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceE
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGT-RCHHLERHLKEHC-KHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLA  276 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s-~~~~l~~~L~~~~-~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~  276 (355)
                      .|+..-+..+...+|.+++|.|..+..+. .|..+...|.+.. ....+.++.||||+.++.+. ..--+.+.+.|....
T Consensus        58 erfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipf  137 (192)
T KOG0083|consen   58 ERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPF  137 (192)
T ss_pred             HHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCc
Confidence            34445555677899999999999876543 3444554454411 23568899999999875432 222344555565556


Q ss_pred             EEeeecCCCChHHHHHHHH
Q 018454          277 FHASINKSFGKGSLLSVLR  295 (355)
Q Consensus       277 f~vSa~~~~Gi~~Ll~~L~  295 (355)
                      ...|+++|++++--+-.|.
T Consensus       138 metsaktg~nvd~af~~ia  156 (192)
T KOG0083|consen  138 METSAKTGFNVDLAFLAIA  156 (192)
T ss_pred             eeccccccccHhHHHHHHH
Confidence            6789999999986555444

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.46  E-value=0.012  Score=53.86  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=22.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+.-+.|+|.||+|||||++.|....
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            45667899999999999999998643

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=95.36  E-value=0.022  Score=60.49  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=30.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEE
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWF  344 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~  344 (355)
                      ++..|+++|.+|+|||||||+|++..+.. ...+|.|.+.
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~i  124 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHI  124 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecc
Confidence            55678999999999999999999876443 4457877543

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01899 Ygr210 Ygr210 subfamily

Probab=95.18  E-value=0.052  Score=53.41  Aligned_cols=57  Identities=18%  Similarity=0.210  Sum_probs=41.6

Q ss_pred             CCCcEEEEEeccCCCChhhHHHHHHHHhhhC-CceEEEeeecCCCChHHHHH-HHHHHHhhh
Q 018454          242 KHKHMILLLNKCDLVPAWATKGWLRVLSKEY-PSLAFHASINKSFGKGSLLS-VLRQFARLK  301 (355)
Q Consensus       242 ~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~-p~~~f~vSa~~~~Gi~~Ll~-~L~q~~~~~  301 (355)
                      ..+|+|+|+||+|+......   .+.+.... ...++.+||+.+.++.+|.+ .+.++++..
T Consensus       213 t~KPvI~VlNK~Dl~~~~~~---~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~  271 (318)
T cd01899         213 RSKPMVIAANKADIPDAENN---ISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD  271 (318)
T ss_pred             cCCcEEEEEEHHHccChHHH---HHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence            46999999999998654332   22332233 34578899999999999998 598888753

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=95.09  E-value=0.019  Score=54.84  Aligned_cols=35  Identities=29%  Similarity=0.502  Sum_probs=24.6

Q ss_pred             HHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          292 SVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       292 ~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ++|..+.+.  ..+...|||-|.||+||||||++|..
T Consensus        17 ~ll~~l~~~--~g~a~~iGiTG~PGaGKSTli~~l~~   51 (266)
T PF03308_consen   17 ELLKRLYPH--TGRAHVIGITGPPGAGKSTLIDALIR   51 (266)
T ss_dssp             HHHHHHGGG--TT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred             HHHHHHHhh--cCCceEEEeeCCCCCcHHHHHHHHHH
Confidence            344444432  23568899999999999999999975

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.09  E-value=0.013  Score=47.69  Aligned_cols=45  Identities=33%  Similarity=0.478  Sum_probs=30.6

Q ss_pred             hcCCCEEEEEecCCCCCCCcc-hHHHHHHHh---hcCCCcEEEEEeccC
Q 018454          210 IDSSDVVVQVLDARDPQGTRC-HHLERHLKE---HCKHKHMILLLNKCD  254 (355)
Q Consensus       210 i~~sDvVL~VvDardp~~s~~-~~l~~~L~~---~~~~k~vILVlNK~D  254 (355)
                      +..+|++|+|+|+.++..... ..+..++..   ..++.|+|||.||.|
T Consensus        71 ~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   71 LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            788999999999998752211 123333333   235799999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.04  E-value=0.017  Score=47.31  Aligned_cols=21  Identities=29%  Similarity=0.705  Sum_probs=19.2

Q ss_pred             EEEeecCCCChhHHHHHhhcc
Q 018454          309 VGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |+|.|.||||||||.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999865

...

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=95.00  E-value=0.29  Score=44.02  Aligned_cols=123  Identities=21%  Similarity=0.142  Sum_probs=79.5

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhh-----cCCCcE-EEEEeccCCCCh-hhHHHHHHHHhhhCC
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHM-ILLLNKCDLVPA-WATKGWLRVLSKEYP  273 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~-----~~~k~v-ILVlNK~DLvp~-~~~~~w~~~l~~~~p  273 (355)
                      ++..-+..+..++=-+++|.|..+-.+  .++++.++.+.     .+++++ .||..|+||... .+..+-.++|...+.
T Consensus        70 rfrsitksyyrnsvgvllvyditnr~s--fehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg  147 (213)
T KOG0091|consen   70 RFRSITKSYYRNSVGVLLVYDITNRES--FEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG  147 (213)
T ss_pred             HHHHHHHHHhhcccceEEEEeccchhh--HHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC
Confidence            444445567788888999999987543  35777787751     245554 678999999853 344555667777777


Q ss_pred             ceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhh
Q 018454          274 SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      ...+..|++++.++++-+..|.+-.........+.+ .-|.-+| ||+-=|++-
T Consensus       148 M~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~-edgw~gv-KSsrpn~i~  199 (213)
T KOG0091|consen  148 MAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKL-EDGWGGV-KSSRPNQIP  199 (213)
T ss_pred             ceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceee-eeccccc-cccCCCcCC
Confidence            677788999999999887777655443322223332 2344333 565444443

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=94.99  E-value=0.022  Score=54.33  Aligned_cols=48  Identities=23%  Similarity=0.278  Sum_probs=35.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC-------ccccCCCCCee--EEEEEEEeeec
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN-------VILFFPASVVW--YWFYCQLLFYF  352 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~-------~~~vs~iPGtT--~~~y~~l~~~~  352 (355)
                      ...+|++||+|.||||||+-.|.+-+       ..+...|||+-  ...-|.|++--
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLP  117 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLP  117 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCc
Confidence            34689999999999999999998632       34556778874  44556666543

>COG3596 Predicted GTPase [General function prediction only]

Probab=94.97  E-value=0.22  Score=48.12  Aligned_cols=97  Identities=14%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh------------hhHHHHHHH----
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA------------WATKGWLRV----  267 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~------------~~~~~w~~~----  267 (355)
                      ......+.+.|+|++++|+.|+....+.++.+-+.-..-.+++++|+|-+|..-+            ..++.+.++    
T Consensus       109 ~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~  188 (296)
T COG3596         109 QLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA  188 (296)
T ss_pred             HHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence            3455678899999999999999888887776666544345899999999997532            111222111    


Q ss_pred             Hhhh-CCce-EEEeeecCCCChHHHHHHHHHHHhh
Q 018454          268 LSKE-YPSL-AFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       268 l~~~-~p~~-~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      +.+. .++. ++.+|...+||++.|...|.+..+.
T Consensus       189 ~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         189 LGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            1111 1222 3345678999999999988877763

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=94.96  E-value=0.019  Score=47.17  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=19.5

Q ss_pred             EEEeecCCCChhHHHHHhhcc
Q 018454          309 VGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |+++|.|+|||||+.+.|...
T Consensus         2 I~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999875

...

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=94.87  E-value=0.14  Score=45.35  Aligned_cols=92  Identities=12%  Similarity=0.124  Sum_probs=61.2

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhhcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeecC
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEHCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      +-.+......|+.|.|..+..+.. +..+.+.+...+...|-+||.||+|+....+. .+-...+........|..|++.
T Consensus        74 tstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe  153 (198)
T KOG0079|consen   74 TSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKE  153 (198)
T ss_pred             HHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhh
Confidence            334557779999999998876542 23444444445667889999999998654321 1111222233456678889999


Q ss_pred             CCChHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQF  297 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~  297 (355)
                      ..+++..+..|...
T Consensus       154 ~~NvE~mF~cit~q  167 (198)
T KOG0079|consen  154 NENVEAMFHCITKQ  167 (198)
T ss_pred             cccchHHHHHHHHH
Confidence            99999998877533

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=94.74  E-value=0.12  Score=47.48  Aligned_cols=49  Identities=16%  Similarity=0.294  Sum_probs=34.5

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--------------------cCCCcEEEEEeccCCCCh
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--------------------CKHKHMILLLNKCDLVPA  258 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--------------------~~~k~vILVlNK~DLvp~  258 (355)
                      ..+..+|++|+|.|..++.+..  .+..|+.+   .                    ..+.|+|||.||+||.+.
T Consensus        73 ~~yr~ad~iIlVyDvtn~~Sf~--~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102          73 VFYNQVNGIILVHDLTNRKSSQ--NLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             HHhCcCCEEEEEEECcChHHHH--HHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence            3567899999999999875432  33333322   1                    135799999999999764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=94.73  E-value=0.022  Score=47.96  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=18.8

Q ss_pred             EEEeecCCCChhHHHHHhhcc
Q 018454          309 VGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.++|.|++||||++..|.+.
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            579999999999999999853

...

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.63  E-value=0.084  Score=48.97  Aligned_cols=83  Identities=18%  Similarity=0.100  Sum_probs=53.8

Q ss_pred             hcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          210 IDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ...+--.|+|.|.......  ..+.+||.+    .+++..++||.||+||..... ..+-...+.+......+..||..+
T Consensus        84 YrgAvGAllVYDITr~~Tf--env~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~  161 (222)
T KOG0087|consen   84 YRGAVGALLVYDITRRQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDA  161 (222)
T ss_pred             hcccceeEEEEechhHHHH--HHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEeccccc
Confidence            3455678999998655433  266777765    236788999999999965221 112223344434455667899999


Q ss_pred             CChHHHHHHH
Q 018454          285 FGKGSLLSVL  294 (355)
Q Consensus       285 ~Gi~~Ll~~L  294 (355)
                      .+++..+..+
T Consensus       162 tNVe~aF~~~  171 (222)
T KOG0087|consen  162 TNVEKAFERV  171 (222)
T ss_pred             ccHHHHHHHH
Confidence            9998766543

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=94.60  E-value=0.054  Score=49.77  Aligned_cols=75  Identities=19%  Similarity=0.239  Sum_probs=47.5

Q ss_pred             EEEEEecCCCCCCCcchHHHHHHHhhcCC--CcEEEEEeccCCCChhhH--HHHHHHHhhhCC-ceEEEeeecCCCChHH
Q 018454          215 VVVQVLDARDPQGTRCHHLERHLKEHCKH--KHMILLLNKCDLVPAWAT--KGWLRVLSKEYP-SLAFHASINKSFGKGS  289 (355)
Q Consensus       215 vVL~VvDardp~~s~~~~l~~~L~~~~~~--k~vILVlNK~DLvp~~~~--~~w~~~l~~~~p-~~~f~vSa~~~~Gi~~  289 (355)
                      +-|+|+|+.......        ++-++.  +-=++|+||+||+|.-..  +...+...+..| ..++++|+++|.|+++
T Consensus       120 ~~v~VidvteGe~~P--------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~  191 (202)
T COG0378         120 LRVVVIDVTEGEDIP--------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDE  191 (202)
T ss_pred             eEEEEEECCCCCCCc--------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHH
Confidence            667888876543211        110011  134899999999985322  334444444445 4567789999999999


Q ss_pred             HHHHHHHH
Q 018454          290 LLSVLRQF  297 (355)
Q Consensus       290 Ll~~L~q~  297 (355)
                      +++++...
T Consensus       192 ~~~~i~~~  199 (202)
T COG0378         192 WLRFIEPQ  199 (202)
T ss_pred             HHHHHHhh
Confidence            99988754

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.56  E-value=0.031  Score=46.90  Aligned_cols=27  Identities=26%  Similarity=0.231  Sum_probs=22.8

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      +-.++++|.+|+|||||+++|.+....
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~~   37 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLPP   37 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred             CCEEEEEccCCCccccceeeecccccc
Confidence            446799999999999999999986533

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=94.54  E-value=0.046  Score=49.90  Aligned_cols=26  Identities=23%  Similarity=0.498  Sum_probs=22.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .....|+|+|++|+||||||+.|+..
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            34667899999999999999999864

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.54  E-value=0.035  Score=52.71  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=20.8

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +=-|.+||.+|+|||||+|.+-+-
T Consensus        29 GEfvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345689999999999999999874

>PRK12735 elongation factor Tu; Reviewed

Probab=94.54  E-value=0.027  Score=56.90  Aligned_cols=26  Identities=23%  Similarity=0.474  Sum_probs=23.7

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhc
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+..++|+++|.+|+|||||+|+|+.
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~   34 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITK   34 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHH
Confidence            45679999999999999999999986

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=94.36  E-value=0.064  Score=49.82  Aligned_cols=38  Identities=29%  Similarity=0.426  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          290 LLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       290 Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.+.|..+..  ...++.-||++|.+|+|||||++.|.+.
T Consensus        19 l~~~~~~~~~--~~~~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         19 LLRRLAALQA--EPQRRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             HHHHHHHHHh--cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3444444432  2346788999999999999999998864

>cd01850 CDC_Septin CDC/Septin

Probab=94.36  E-value=0.1  Score=50.12  Aligned_cols=48  Identities=13%  Similarity=0.140  Sum_probs=34.3

Q ss_pred             CCCEEEEEecCCC-CCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHH
Q 018454          212 SSDVVVQVLDARD-PQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK  262 (355)
Q Consensus       212 ~sDvVL~VvDard-p~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~  262 (355)
                      .+|++++++|+.. .+...+..+.+.+.   .+.++|+|+||+|++......
T Consensus       114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~~  162 (276)
T cd01850         114 RVHACLYFIEPTGHGLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEELK  162 (276)
T ss_pred             ceEEEEEEEeCCCCCCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHHH
Confidence            5789999998763 44444455555554   368999999999998755433

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=94.30  E-value=0.073  Score=47.66  Aligned_cols=36  Identities=17%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV  340 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt  340 (355)
                      +.++|.++|..|+||+||++.|.+...-+++|.-|.
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf   50 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGF   50 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCccccCCccce
Confidence            479999999999999999999999998889998875

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=94.28  E-value=0.033  Score=48.24  Aligned_cols=21  Identities=38%  Similarity=0.504  Sum_probs=18.5

Q ss_pred             EEEEeecCCCChhHHHHHhhc
Q 018454          308 SVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .|+|||+.|+|||||+..|++
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~   22 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLIN   22 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999988865

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.25  E-value=0.064  Score=48.18  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=21.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.++++|.+|+||||++++|.+.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3456899999999999999999863

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=94.25  E-value=0.058  Score=52.45  Aligned_cols=26  Identities=15%  Similarity=0.454  Sum_probs=22.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .....|+|+|.||+||||||+.|++.
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~  127 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMR  127 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678899999999999999988764

>CHL00189 infB translation initiation factor 2; Provisional

Probab=94.24  E-value=0.051  Score=59.20  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=28.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .+...|+++|++|+|||||+++|+..... .+..+|.|
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiT  278 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGIT  278 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccc
Confidence            35678999999999999999999876543 34456665

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=94.21  E-value=0.038  Score=47.44  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=19.4

Q ss_pred             EEEeecCCCChhHHHHHhhcc
Q 018454          309 VGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ++++|.+|+|||||++.|.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            579999999999999999975

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=94.17  E-value=0.26  Score=49.82  Aligned_cols=85  Identities=18%  Similarity=0.079  Sum_probs=55.3

Q ss_pred             cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh------C------------
Q 018454          211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE------Y------------  272 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~------~------------  272 (355)
                      ...|.+++||-|.|.+.-.-.+=...+..  -..|+|+|++|||++|.+......+.++..      .            
T Consensus       225 qk~dYglLvVaAddG~~~~tkEHLgi~~a--~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~  302 (527)
T COG5258         225 QKVDYGLLVVAADDGVTKMTKEHLGIALA--MELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVL  302 (527)
T ss_pred             cccceEEEEEEccCCcchhhhHhhhhhhh--hcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHH
Confidence            56789999998888765433222222222  468999999999999987544333332211      0            


Q ss_pred             ----------CceEEEeeecCCCChHHHHHHHHHH
Q 018454          273 ----------PSLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       273 ----------p~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                                -+.+|.+|+-++.|++-|.+.+..+
T Consensus       303 aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L  337 (527)
T COG5258         303 AAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL  337 (527)
T ss_pred             hhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence                      1235778999999998777666543

>PLN03127 Elongation factor Tu; Provisional

Probab=94.10  E-value=0.1  Score=53.69  Aligned_cols=25  Identities=24%  Similarity=0.492  Sum_probs=23.1

Q ss_pred             cccceEEEEeecCCCChhHHHHHhh
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      .+..++|+++|.+|+|||||+++|.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~   82 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAIT   82 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHH
Confidence            4678999999999999999999997

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=94.10  E-value=0.071  Score=58.53  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=29.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .++..|+++|.+|+||||||++|++..+. .+..+|.|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT  324 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGIT  324 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCcee
Confidence            35677899999999999999999876543 44456766

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=94.09  E-value=0.16  Score=51.89  Aligned_cols=55  Identities=18%  Similarity=0.228  Sum_probs=43.5

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      ..+-+.+|+.+-.+|..|.|+||.-....+-..|.+..+-  .+.|++-.+||.|..
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl--R~iPI~TFiNKlDR~  146 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL--RDIPIFTFINKLDRE  146 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhh--cCCceEEEeeccccc
Confidence            3455678899999999999999988776665555554443  689999999999964

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=93.99  E-value=0.042  Score=41.47  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.1

Q ss_pred             EEEeecCCCChhHHHHHhhcc
Q 018454          309 VGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |++.|.|++||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999865

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=93.97  E-value=0.14  Score=53.06  Aligned_cols=79  Identities=19%  Similarity=0.166  Sum_probs=54.3

Q ss_pred             CEEEEEecCCCCCCCcc---hHHHHHHHhhcCCCcEEEEEeccCCCChhhH----HHHHHHHhhhCCceEEEeeecCCCC
Q 018454          214 DVVVQVLDARDPQGTRC---HHLERHLKEHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSKEYPSLAFHASINKSFG  286 (355)
Q Consensus       214 DvVL~VvDardp~~s~~---~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~~~p~~~f~vSa~~~~G  286 (355)
                      ..|||+.|...-=|...   ..|.+-|+..+.++++|+|+||||+.+.+..    ++..+.+.....+.++..|+....|
T Consensus       249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eeg  328 (620)
T KOG1490|consen  249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEG  328 (620)
T ss_pred             hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhc
Confidence            46899999875333211   2344556666789999999999999865432    3455555555567778889999999


Q ss_pred             hHHHHH
Q 018454          287 KGSLLS  292 (355)
Q Consensus       287 i~~Ll~  292 (355)
                      +-++..
T Consensus       329 Vm~Vrt  334 (620)
T KOG1490|consen  329 VMDVRT  334 (620)
T ss_pred             eeeHHH
Confidence            866543

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=93.97  E-value=0.06  Score=53.37  Aligned_cols=25  Identities=40%  Similarity=0.716  Sum_probs=21.9

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      +....|+|.|.||+|||||++.|..
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~   78 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGM   78 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999999999998754

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=93.91  E-value=0.18  Score=52.98  Aligned_cols=87  Identities=23%  Similarity=0.169  Sum_probs=50.6

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCC--------CCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHH----HH
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDAR--------DPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKG----WL  265 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDar--------dp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~----w~  265 (355)
                      +.+...+..-+..+|+.|+|+||.        +|.+.-.++ ...++. ..-..+|+++||+|++.=  +-.++    ..
T Consensus       266 kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~-Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~  343 (603)
T KOG0458|consen  266 KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRS-LGISQLIVAINKMDLVSWSQDRFEEIKNKLS  343 (603)
T ss_pred             cccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHH-cCcceEEEEeecccccCccHHHHHHHHHHHH
Confidence            344444556778999999999995        333322222 222322 134679999999999952  11122    22


Q ss_pred             HHHhhhC-----CceEEEeeecCCCChH
Q 018454          266 RVLSKEY-----PSLAFHASINKSFGKG  288 (355)
Q Consensus       266 ~~l~~~~-----p~~~f~vSa~~~~Gi~  288 (355)
                      .+|.+..     .+..+++|+.+|.|+-
T Consensus       344 ~fL~~~~gf~es~v~FIPiSGl~GeNL~  371 (603)
T KOG0458|consen  344 SFLKESCGFKESSVKFIPISGLSGENLI  371 (603)
T ss_pred             HHHHHhcCcccCCcceEecccccCCccc
Confidence            2332322     1346788999998863

>PLN03210 Resistant to P

Probab=93.90  E-value=0.51  Score=54.10  Aligned_cols=127  Identities=18%  Similarity=0.274  Sum_probs=76.1

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCC--------------------Ch
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLV--------------------PA  258 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLv--------------------p~  258 (355)
                      .+..++.++|+.+-+.|.|+.-.-..+..| .++.+++.- +..+..++=|+-++|-.                    +.
T Consensus        54 ~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~  133 (1153)
T PLN03210         54 SLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTE  133 (1153)
T ss_pred             cccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccch
Confidence            455677888999999999987776666666 344444432 12345567788888721                    11


Q ss_pred             hhHHHHHHHHhhhCCceEEEe---------------------------eecCCCChHHHHHHHHHHHhhhccccceEEEE
Q 018454          259 WATKGWLRVLSKEYPSLAFHA---------------------------SINKSFGKGSLLSVLRQFARLKSDKQAISVGF  311 (355)
Q Consensus       259 ~~~~~w~~~l~~~~p~~~f~v---------------------------Sa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~  311 (355)
                      +...+|.+.+........++.                           ....-.|+++-++.|..++....+ ..-.|++
T Consensus       134 ~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~-~~~vvgI  212 (1153)
T PLN03210        134 DEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESE-EVRMVGI  212 (1153)
T ss_pred             hHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccC-ceEEEEE
Confidence            224567666654321111111                           011223666656666555543333 3456899


Q ss_pred             eecCCCChhHHHHHhhc
Q 018454          312 VGYPNVGKSSVINTLRT  328 (355)
Q Consensus       312 vG~pNVGKSSLIN~Ll~  328 (355)
                      +|.+|+|||||..++-.
T Consensus       213 ~G~gGiGKTTLA~~l~~  229 (1153)
T PLN03210        213 WGSSGIGKTTIARALFS  229 (1153)
T ss_pred             EcCCCCchHHHHHHHHH
Confidence            99999999999998854

syringae 6; Provisional

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=93.69  E-value=0.052  Score=47.48  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             EEEEeecCCCChhHHHHHhhccC
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +|+|||.+++|||||+++|.+..
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCC
Confidence            57999999999999999999853

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=93.68  E-value=0.12  Score=42.28  Aligned_cols=40  Identities=18%  Similarity=0.341  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+.+++.+..++..   ..+..+.++|.||+|||++++.+...
T Consensus         3 ~~~~~~~i~~~~~~---~~~~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009           3 QEEAIEALREALEL---PPPKNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             hHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34455555555431   23456899999999999999999864

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=93.68  E-value=0.09  Score=52.64  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             eEEEEeecCCCChhHHHHHhhcc
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .-++|+|.||+|||||.++|.+.
T Consensus        79 ~il~L~GPPGsGKStla~~La~~  101 (361)
T smart00763       79 QILYLLGPVGGGKSSLVECLKRG  101 (361)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            44699999999999999999863

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=93.67  E-value=0.11  Score=56.44  Aligned_cols=53  Identities=17%  Similarity=0.224  Sum_probs=40.3

Q ss_pred             HHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454          203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       203 ~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp  257 (355)
                      ..++...+..+|.+|+|+|+.+........+.+.+..  .+.|.++|+||+|...
T Consensus       100 ~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~  152 (720)
T TIGR00490       100 GGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--ENVKPVLFINKVDRLI  152 (720)
T ss_pred             HHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--cCCCEEEEEEChhccc
Confidence            3566778899999999999988765555555555433  4678899999999863

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PLN00023 GTP-binding protein; Provisional

Probab=93.54  E-value=0.14  Score=50.82  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=23.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ..++|.+||..+|||||||+.+.....
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F   46 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSS   46 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCc
Confidence            468899999999999999999997653

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=93.46  E-value=0.11  Score=50.68  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=25.4

Q ss_pred             HHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          294 LRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       294 L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ..+++.....+.+.-|||+|.+++||||+.+.|.+
T Consensus        50 ~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~   84 (290)
T TIGR00554        50 LEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQA   84 (290)
T ss_pred             HHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            33344333335678899999999999999987754

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=93.44  E-value=0.53  Score=43.05  Aligned_cols=88  Identities=15%  Similarity=0.096  Sum_probs=56.3

Q ss_pred             hcCCCEEEEEecCCCCCCCcc-hHHH-HHHHhh----cCCCcEEEEEeccCCCC---hhh-HHHHHHHHhhhCCceEEEe
Q 018454          210 IDSSDVVVQVLDARDPQGTRC-HHLE-RHLKEH----CKHKHMILLLNKCDLVP---AWA-TKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       210 i~~sDvVL~VvDardp~~s~~-~~l~-~~L~~~----~~~k~vILVlNK~DLvp---~~~-~~~w~~~l~~~~p~~~f~v  279 (355)
                      ...+|..++|.|..++.+... ..+. ++|...    -.+-|+||+.||+|+-.   ..+ ..+-+...........|..
T Consensus        79 YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEt  158 (210)
T KOG0394|consen   79 YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFET  158 (210)
T ss_pred             ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEe
Confidence            467899999999888765432 1222 223221    13578999999999854   222 1233334444455556888


Q ss_pred             eecCCCChHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~  297 (355)
                      ||+...++.+.+..+...
T Consensus       159 SAK~~~NV~~AFe~ia~~  176 (210)
T KOG0394|consen  159 SAKEATNVDEAFEEIARR  176 (210)
T ss_pred             cccccccHHHHHHHHHHH
Confidence            999999999887766543

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=93.41  E-value=0.077  Score=56.58  Aligned_cols=58  Identities=21%  Similarity=0.263  Sum_probs=44.1

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      +|| ..+..++-..+..+|.|++|+|+.+...-.-+.+.+..-+  .+.++++|+||+|++
T Consensus       205 PGH-VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGH-VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--NRLPIVVVINKVDRL  262 (971)
T ss_pred             CCc-ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--ccCcEEEEEehhHHH
Confidence            566 3567888889999999999999998775544444443333  479999999999974

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=93.18  E-value=0.066  Score=48.66  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             EEEEeecCCCChhHHHHHhhccC
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .++++|.+|+|||||++.|.+..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            67999999999999999999753

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06696 uridine kinase; Validated

Probab=93.15  E-value=0.16  Score=46.87  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       289 ~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ++++.|.+.........+.-|++.|.|++|||||-+.|..
T Consensus         5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~   44 (223)
T PRK06696          5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE   44 (223)
T ss_pred             HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            4455554444322234678899999999999999998875

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=92.96  E-value=0.063  Score=52.91  Aligned_cols=33  Identities=21%  Similarity=0.149  Sum_probs=25.5

Q ss_pred             eEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASV  339 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG  339 (355)
                      ..|+++|.|++|||||+|.|.+.-...+.+-+|
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~  195 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYA  195 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehh
Confidence            468999999999999999999864444444343

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=92.94  E-value=0.084  Score=39.65  Aligned_cols=19  Identities=21%  Similarity=0.419  Sum_probs=17.3

Q ss_pred             EEEeecCCCChhHHHHHhh
Q 018454          309 VGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll  327 (355)
                      ..|.|.+++|||||+.++.
T Consensus        26 tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   26 TLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5899999999999999875

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=92.85  E-value=0.1  Score=47.36  Aligned_cols=50  Identities=18%  Similarity=0.260  Sum_probs=28.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH----Hh---hcCCCcEEEEEeccCCCChh
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL----KE---HCKHKHMILLLNKCDLVPAW  259 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L----~~---~~~~k~vILVlNK~DLvp~~  259 (355)
                      .+..+-.||+|||+...... ...+.++|    ..   .....|++|+.||.|+....
T Consensus        72 ~~~~~k~IIfvvDSs~~~~~-~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   72 YLSNAKGIIFVVDSSTDQKE-LRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             HHGGEEEEEEEEETTTHHHH-HHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             chhhCCEEEEEEeCccchhh-HHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            47889999999999742211 12223333    22   12457899999999997643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK05439 pantothenate kinase; Provisional

Probab=92.84  E-value=0.14  Score=50.28  Aligned_cols=41  Identities=29%  Similarity=0.409  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ..+...+.++++....+.+.-||+.|.|+|||||+.+.|..
T Consensus        68 ~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~  108 (311)
T PRK05439         68 QRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA  108 (311)
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34555566666544456778899999999999999998875

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=92.81  E-value=0.076  Score=49.87  Aligned_cols=28  Identities=29%  Similarity=0.296  Sum_probs=22.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      ++--|+++|.+|+|||||+|.|-+-...
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p   57 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP   57 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            3445799999999999999999865544

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=92.79  E-value=0.073  Score=49.03  Aligned_cols=27  Identities=19%  Similarity=0.160  Sum_probs=22.1

Q ss_pred             eEEEEeecCCCChhHHHHHhhccCccc
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKNVIL  333 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~  333 (355)
                      -=++++|.+|+||||||+.|.+....+
T Consensus        29 ef~fl~GpSGAGKSTllkLi~~~e~pt   55 (223)
T COG2884          29 EFVFLTGPSGAGKSTLLKLIYGEERPT   55 (223)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence            346899999999999999998765433

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.76  E-value=0.078  Score=55.41  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=22.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .++-+|++||-+|+||||+||+|++
T Consensus       376 ~kGekVaIvG~nGsGKSTilr~Llr  400 (591)
T KOG0057|consen  376 PKGEKVAIVGSNGSGKSTILRLLLR  400 (591)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999987

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=92.74  E-value=0.18  Score=54.33  Aligned_cols=46  Identities=17%  Similarity=0.346  Sum_probs=34.1

Q ss_pred             CCCChHHHHHHHHHHHhhh---ccccceEEEEeecCCCChhHHHHHhhc
Q 018454          283 KSFGKGSLLSVLRQFARLK---SDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~~~---~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      +-+|++.+.+.+-+|+.-.   ..-++--+++||.|||||+||-+++-+
T Consensus       324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~  372 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK  372 (782)
T ss_pred             cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH
Confidence            4468888888887776532   223334458999999999999998854

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=92.68  E-value=0.1  Score=42.00  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             eEEEEeecCCCChhHHHHHhhcc
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+.++|.||+||||++..|...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~   25 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARE   25 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc
Confidence            45789999999999999998763

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=92.64  E-value=0.11  Score=50.85  Aligned_cols=25  Identities=36%  Similarity=0.623  Sum_probs=21.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .....||+-|.|||||||||-.|..
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~   73 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGR   73 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHH
Confidence            3567889999999999999999865

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=92.63  E-value=0.13  Score=50.82  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=21.5

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ....|.|+|-+|+||||++|+|+.
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~  182 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALR  182 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHh
Confidence            356789999999999999999986

>PRK00049 elongation factor Tu; Reviewed

Probab=92.59  E-value=0.093  Score=53.02  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=23.3

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      +..++|+++|.+|+|||||+++|+.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~   34 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITK   34 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHH
Confidence            5678999999999999999999986

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=92.59  E-value=0.1  Score=47.31  Aligned_cols=25  Identities=28%  Similarity=0.210  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        27 G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          27 GEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            4457999999999999999999853

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=92.58  E-value=0.13  Score=47.59  Aligned_cols=27  Identities=19%  Similarity=0.059  Sum_probs=22.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      +-.++++|.+|+|||||++.|.+....
T Consensus        12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   38 (230)
T TIGR02770        12 GEVLALVGESGSGKSLTCLAILGLLPP   38 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            445799999999999999999986543

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=92.55  E-value=0.64  Score=44.65  Aligned_cols=87  Identities=21%  Similarity=0.179  Sum_probs=47.4

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhC------CceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEY------PSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~------p~~~f~vS  280 (355)
                      .+.+-+|.+++|+-.--  +.....+-.-+.+    ..=|+|+||+|+-..... ......+.-..      ...++.+|
T Consensus       138 ~I~~~aD~~v~v~~Pg~--GD~iQ~~KaGimE----iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~ts  211 (266)
T PF03308_consen  138 DIADMADTVVLVLVPGL--GDEIQAIKAGIME----IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTS  211 (266)
T ss_dssp             HHHTTSSEEEEEEESST--CCCCCTB-TTHHH----H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred             HHHHhcCeEEEEecCCC--ccHHHHHhhhhhh----hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEE
Confidence            46788999999884321  1111111111111    234999999995332222 22222222111      13577889


Q ss_pred             ecCCCChHHHHHHHHHHHhh
Q 018454          281 INKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      +.++.|+++|.+.|.++...
T Consensus       212 A~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  212 ALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999877653

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=92.53  E-value=0.097  Score=48.45  Aligned_cols=26  Identities=15%  Similarity=0.244  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34457999999999999999999853

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03126 Elongation factor Tu; Provisional

Probab=92.50  E-value=0.16  Score=52.86  Aligned_cols=27  Identities=22%  Similarity=0.460  Sum_probs=24.1

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhcc
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..++|+++|.+|+|||||+++|+..
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~  104 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMA  104 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHh
Confidence            466799999999999999999999963

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=92.44  E-value=0.11  Score=47.50  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            4457999999999999999999854

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK12736 elongation factor Tu; Reviewed

Probab=92.38  E-value=0.1  Score=52.73  Aligned_cols=26  Identities=19%  Similarity=0.477  Sum_probs=23.7

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhc
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+..++|+++|.+++|||||+++|++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~   34 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITK   34 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHh
Confidence            45679999999999999999999986

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.36  E-value=0.088  Score=60.66  Aligned_cols=25  Identities=40%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-+||+||.+|+|||||+++|.+-
T Consensus      1165 p~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1165 PGEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHh
Confidence            5678999999999999999999873

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=92.30  E-value=0.11  Score=47.11  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999999854

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=92.29  E-value=0.11  Score=47.35  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34457999999999999999999853

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=92.22  E-value=0.19  Score=53.67  Aligned_cols=46  Identities=24%  Similarity=0.364  Sum_probs=33.2

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccC
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFF  335 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs  335 (355)
                      |..+=+..|.+.+.    +....|.|-|..|.||||+||+|+.++++.-+
T Consensus        93 ~~~~~l~~i~~~l~----r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g  138 (749)
T KOG0448|consen   93 GYEDKLDAIDEVLA----RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSG  138 (749)
T ss_pred             cHHHHHHHHHHHHh----hcccEEEEeCCCCCcHHHHHHHHHHHhhCccc
Confidence            34444444444332    56788999999999999999999988765543

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=92.19  E-value=0.12  Score=47.11  Aligned_cols=26  Identities=19%  Similarity=0.327  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999998753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=92.17  E-value=0.12  Score=46.16  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.5

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3457999999999999999999853

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=92.17  E-value=0.12  Score=47.19  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          28 GEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4457999999999999999999854

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=92.16  E-value=0.81  Score=44.88  Aligned_cols=102  Identities=18%  Similarity=0.177  Sum_probs=55.7

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCC-cEEEEEeccCCCChhhHHH-----HHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHK-HMILLLNKCDLVPAWATKG-----WLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k-~vILVlNK~DLvp~~~~~~-----w~~~l~  269 (355)
                      +||. ..++...--..+.|-.|+|+.|.|.+..  .-.+..|....-+. .+++.+||+|++......+     ..+.|+
T Consensus        83 PGHa-DYvKNMItgAaqmDgAILVVsA~dGpmP--qTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs  159 (394)
T COG0050          83 PGHA-DYVKNMITGAAQMDGAILVVAATDGPMP--QTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             CChH-HHHHHHhhhHHhcCccEEEEEcCCCCCC--cchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence            5653 3444444456788999999999876533  22233333211345 4667799999998443322     222233


Q ss_pred             hh-CC---ceEEEeeecCCC--------ChHHHHHHHHHHHhh
Q 018454          270 KE-YP---SLAFHASINKSF--------GKGSLLSVLRQFARL  300 (355)
Q Consensus       270 ~~-~p---~~~f~vSa~~~~--------Gi~~Ll~~L~q~~~~  300 (355)
                      .. +|   +.++.-|+....        .+.+|++.+-.+.+.
T Consensus       160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~  202 (394)
T COG0050         160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT  202 (394)
T ss_pred             HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence            22 33   234444544321        246777777777653

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=92.10  E-value=0.12  Score=47.50  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34457999999999999999999763

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=92.10  E-value=0.12  Score=46.60  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        24 GKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            4457999999999999999999854

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=92.10  E-value=0.13  Score=47.50  Aligned_cols=26  Identities=23%  Similarity=0.436  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999998854

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=92.07  E-value=0.35  Score=45.59  Aligned_cols=53  Identities=17%  Similarity=0.310  Sum_probs=33.3

Q ss_pred             hhhcCCCEEEEEecCC-CCCCCcchHHHHHH---HhhcCCCcEEEEEeccCCCChhh
Q 018454          208 KVIDSSDVVVQVLDAR-DPQGTRCHHLERHL---KEHCKHKHMILLLNKCDLVPAWA  260 (355)
Q Consensus       208 kvi~~sDvVL~VvDar-dp~~s~~~~l~~~L---~~~~~~k~vILVlNK~DLvp~~~  260 (355)
                      .+..+++++|+|+|+. ++....-..+...+   ....++..+-+.+.|+|+++...
T Consensus        72 ~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~  128 (232)
T PF04670_consen   72 EIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDE  128 (232)
T ss_dssp             HHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHH
T ss_pred             HHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHH
Confidence            4678899999999998 33221112222222   23457889999999999998654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=92.06  E-value=0.11  Score=47.75  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             eEEEEeecCCCChhHHHHHhhcc
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      -.|+++|.+|+|||||+|-+-+-
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhc
Confidence            45799999999999999999874

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=92.05  E-value=0.29  Score=45.96  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=22.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ..++|.+||-+||||||||+.+....
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~   37 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDC   37 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCC
Confidence            35788999999999999999998754

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=92.03  E-value=0.13  Score=44.42  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3456899999999999999998864

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=92.03  E-value=0.12  Score=46.52  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=22.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            34567999999999999999999864

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=92.03  E-value=0.12  Score=52.11  Aligned_cols=26  Identities=23%  Similarity=0.501  Sum_probs=23.3

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhc
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .++.++|+++|.+|+|||||+++|++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~   34 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITT   34 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHh
Confidence            35678999999999999999999984

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=91.95  E-value=0.13  Score=47.15  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4457999999999999999999853

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.93  E-value=0.11  Score=50.93  Aligned_cols=24  Identities=25%  Similarity=0.547  Sum_probs=19.6

Q ss_pred             eEEEEeecCCCChhHHHHHhhccC
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      --.|+||++|+||||||..+-+-.
T Consensus        33 eI~GIIG~SGAGKSTLiR~iN~Le   56 (339)
T COG1135          33 EIFGIIGYSGAGKSTLLRLINLLE   56 (339)
T ss_pred             cEEEEEcCCCCcHHHHHHHHhccC
Confidence            345999999999999998776543

>PLN00023 GTP-binding protein; Provisional

Probab=91.93  E-value=0.17  Score=50.21  Aligned_cols=48  Identities=19%  Similarity=0.213  Sum_probs=33.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc-------------CCCcEEEEEeccCCCCh
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC-------------KHKHMILLLNKCDLVPA  258 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~-------------~~k~vILVlNK~DLvp~  258 (355)
                      .+..+|++|+|+|+.+....  ..+..++.   ...             .+.|+|||.||+||...
T Consensus       103 yyr~AdgiILVyDITdr~SF--enL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023        103 FYSQINGVIFVHDLSQRRTK--TSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             hccCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            47889999999999886432  23444433   221             14789999999999754

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=91.91  E-value=0.12  Score=53.76  Aligned_cols=28  Identities=21%  Similarity=0.194  Sum_probs=24.1

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      +++-.|++||.+|+|||||+|.|.+--.
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~  386 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLLD  386 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4567789999999999999999998643

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=91.90  E-value=0.13  Score=46.79  Aligned_cols=25  Identities=12%  Similarity=0.291  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          26 GEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4457999999999999999999853

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02772 guanylate kinase

Probab=91.88  E-value=0.11  Score=52.48  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.4

Q ss_pred             eEEEEeecCCCChhHHHHHhhcc
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+.|+|.+|||||||++.|+..
T Consensus       136 k~iVlsGPSGvGKsTL~~~L~~~  158 (398)
T PLN02772        136 KPIVISGPSGVGKGTLISMLMKE  158 (398)
T ss_pred             cEEEEECCCCCCHHHHHHHHhhh
Confidence            45789999999999999999874

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=91.87  E-value=0.13  Score=46.49  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          26 GEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4467999999999999999999854

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=91.85  E-value=0.13  Score=46.76  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=22.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34467999999999999999999853

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=91.85  E-value=0.14  Score=46.40  Aligned_cols=26  Identities=15%  Similarity=0.256  Sum_probs=22.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.++++|.+|+|||||++.|.+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45567999999999999999999864

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=91.83  E-value=0.14  Score=46.10  Aligned_cols=24  Identities=25%  Similarity=0.255  Sum_probs=20.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+-.++++|.+|+|||||+|.|+.
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            445679999999999999999873

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.82  E-value=0.14  Score=46.10  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.8

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         26 SAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            4467999999999999999999864

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=91.80  E-value=0.15  Score=46.33  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=22.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34457999999999999999999854

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=91.79  E-value=0.13  Score=47.05  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          30 GEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4457999999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=91.77  E-value=0.14  Score=45.42  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999999753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=91.77  E-value=0.13  Score=47.70  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999999854

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=91.75  E-value=0.14  Score=46.79  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999999854

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.74  E-value=1.3  Score=39.71  Aligned_cols=85  Identities=16%  Similarity=0.216  Sum_probs=55.7

Q ss_pred             cCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          211 DSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ..+--.|+++|.....+.  .++..|+..     ...+-.+|+..||+||....+ .+.-...+...+....|..||-+|
T Consensus        89 RDAMGFlLiFDlT~eqSF--LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg  166 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSF--LNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG  166 (219)
T ss_pred             HhhccceEEEeccchHHH--HHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence            444557888888765443  234445443     123456889999999976543 344445566667777788899999


Q ss_pred             CChHHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQF  297 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~  297 (355)
                      .++++-++.|-.+
T Consensus       167 ~Nv~kave~Lldl  179 (219)
T KOG0081|consen  167 TNVEKAVELLLDL  179 (219)
T ss_pred             cCHHHHHHHHHHH
Confidence            9988766655443

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=91.72  E-value=0.14  Score=46.45  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          26 GEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4457999999999999999999853

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=91.68  E-value=0.15  Score=47.22  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+-.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34457999999999999999998754

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=91.67  E-value=0.15  Score=44.81  Aligned_cols=26  Identities=19%  Similarity=0.275  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999998864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.65  E-value=0.15  Score=46.20  Aligned_cols=38  Identities=18%  Similarity=0.397  Sum_probs=34.3

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV  340 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt  340 (355)
                      ..+..+|.++|.-|+||||+++.|......++.|.-|.
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGf   51 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGF   51 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccc
Confidence            45678999999999999999999999999999888875

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=91.64  E-value=0.15  Score=46.56  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        31 G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        31 GEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4457999999999999999998863

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=91.62  E-value=0.7  Score=42.58  Aligned_cols=89  Identities=19%  Similarity=0.176  Sum_probs=56.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhH-HHHH------------HHHhhh-C
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWAT-KGWL------------RVLSKE-Y  272 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-~~w~------------~~l~~~-~  272 (355)
                      ....+|++|...+..+|.+..+  ..+...+....++.|+|||.+|.||-..... +...            ..+.+. +
T Consensus        73 sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ig  152 (198)
T KOG0393|consen   73 SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIG  152 (198)
T ss_pred             CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhC
Confidence            4567899999888888765432  2222333444578999999999999743211 1111            112222 1


Q ss_pred             CceEEEeeecCCCChHHHHHHHHHH
Q 018454          273 PSLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       273 p~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      ....+.+|+.+..|+.+.++.....
T Consensus       153 a~~y~EcSa~tq~~v~~vF~~a~~~  177 (198)
T KOG0393|consen  153 AVKYLECSALTQKGVKEVFDEAIRA  177 (198)
T ss_pred             cceeeeehhhhhCCcHHHHHHHHHH
Confidence            2345678999999998888765444

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=91.61  E-value=0.2  Score=47.05  Aligned_cols=27  Identities=19%  Similarity=0.081  Sum_probs=22.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      .+-.++++|.+|+|||||++.|.+...
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   54 (254)
T PRK10418         28 RGRVLALVGGSGSGKSLTCAAALGILP   54 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            344679999999999999999998643

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=91.61  E-value=0.51  Score=46.64  Aligned_cols=76  Identities=26%  Similarity=0.150  Sum_probs=45.2

Q ss_pred             cCCCEEEEEecCCCCCCCcc---hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454          211 DSSDVVVQVLDARDPQGTRC---HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK  287 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~---~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi  287 (355)
                      -.-|-||-|||+........   ..+...|.-     -=+||+||+||+...........+....|...+.-......+.
T Consensus       115 ~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~~~~~~  189 (323)
T COG0523         115 VRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVDAEELEALEARLRKLNPRARIIETSYGDVDL  189 (323)
T ss_pred             eeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEccccCCCH
Confidence            34577999999987654432   223333321     2389999999999776655566666666644333222244444


Q ss_pred             HHHH
Q 018454          288 GSLL  291 (355)
Q Consensus       288 ~~Ll  291 (355)
                      .+++
T Consensus       190 ~~ll  193 (323)
T COG0523         190 AELL  193 (323)
T ss_pred             HHhh
Confidence            3333

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=91.61  E-value=0.15  Score=46.35  Aligned_cols=26  Identities=15%  Similarity=0.249  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.++++|.+|+|||||++.|.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999999853

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=91.60  E-value=0.16  Score=45.31  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34457999999999999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=91.59  E-value=0.15  Score=48.33  Aligned_cols=31  Identities=26%  Similarity=0.300  Sum_probs=24.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFF  335 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs  335 (355)
                      ++-.++++|.+|+|||||++.|.+-..+..+
T Consensus        25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G   55 (255)
T cd03236          25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLG   55 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            4556799999999999999999986544433

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.56  E-value=0.16  Score=45.96  Aligned_cols=26  Identities=12%  Similarity=0.151  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.++++|.+|+|||||++.|.+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34567999999999999999998854

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=91.54  E-value=0.16  Score=46.06  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=22.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.++++|.+|+|||||++.|.+..
T Consensus        33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          33 AGEKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34567999999999999999998853

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=91.52  E-value=0.34  Score=43.42  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=24.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFP  336 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~  336 (355)
                      ..++|.+||-+||||||||-.......=...|
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~   41 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHP   41 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCC
Confidence            35778999999999999998888765433333

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=91.52  E-value=0.23  Score=49.45  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ....|.|+|.+|+||||++|+|++.
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~  185 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISA  185 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcc
Confidence            4567899999999999999999873

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=91.52  E-value=0.15  Score=47.79  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.++++|.+|+|||||++.|.+.
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3445799999999999999999875

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=91.52  E-value=0.33  Score=41.88  Aligned_cols=48  Identities=25%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchH-HHHHHHhhcCCCcEEEEEecc
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHH-LERHLKEHCKHKHMILLLNKC  253 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~-l~~~L~~~~~~k~vILVlNK~  253 (355)
                      .-+.+.+..+|+||+|+|+..+....+.. +.+.+..  .+..+++|+||+
T Consensus       120 ~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~--~~~~~i~V~nk~  168 (168)
T PF00350_consen  120 EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP--DKSRTIFVLNKA  168 (168)
T ss_dssp             HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT--TCSSEEEEEE-G
T ss_pred             HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC--CCCeEEEEEcCC
Confidence            34555779999999999999876544322 2222222  345699999996

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=91.51  E-value=0.15  Score=47.60  Aligned_cols=26  Identities=15%  Similarity=0.331  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34457999999999999999998753

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=91.50  E-value=0.15  Score=47.29  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=21.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34457999999999999999998753

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=91.50  E-value=0.16  Score=46.25  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34457999999999999999998854

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=91.48  E-value=0.16  Score=46.78  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34457999999999999999999753

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.47  E-value=0.16  Score=46.15  Aligned_cols=26  Identities=12%  Similarity=0.176  Sum_probs=22.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.++++|.+|+|||||++.|.+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999999864

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=91.47  E-value=0.16  Score=46.28  Aligned_cols=25  Identities=20%  Similarity=0.305  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          31 GEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCc
Confidence            4457999999999999999999853

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=91.42  E-value=2.4  Score=38.05  Aligned_cols=90  Identities=16%  Similarity=0.144  Sum_probs=54.8

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhc-CCCcEEEEEeccCCCChhhHH-HHHHH------------H--h
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHC-KHKHMILLLNKCDLVPAWATK-GWLRV------------L--S  269 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~-~~k~vILVlNK~DLvp~~~~~-~w~~~------------l--~  269 (355)
                      .....++.+++|+|..+......  ..+...+.... ...++++|.||+||....... .....            .  .
T Consensus        73 ~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (219)
T COG1100          73 EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL  152 (219)
T ss_pred             HHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhh
Confidence            45688899999999987443322  23333334332 258999999999998754211 00000            0  0


Q ss_pred             h--hCCceEEEeeec--CCCChHHHHHHHHHHH
Q 018454          270 K--EYPSLAFHASIN--KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       270 ~--~~p~~~f~vSa~--~~~Gi~~Ll~~L~q~~  298 (355)
                      .  ..+. .+.+|+.  .+.++.+++..+...+
T Consensus       153 ~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~~  184 (219)
T COG1100         153 PEVANPA-LLETSAKSLTGPNVNELFKELLRKL  184 (219)
T ss_pred             hhhcccc-eeEeecccCCCcCHHHHHHHHHHHH
Confidence            0  0223 5677888  8999998877655444

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=91.39  E-value=0.16  Score=47.92  Aligned_cols=26  Identities=15%  Similarity=0.208  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999999854

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=91.36  E-value=0.16  Score=47.74  Aligned_cols=26  Identities=27%  Similarity=0.501  Sum_probs=22.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999999854

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=91.36  E-value=0.17  Score=46.64  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999999854

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=91.32  E-value=0.17  Score=45.60  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999999864

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=91.32  E-value=0.15  Score=53.54  Aligned_cols=28  Identities=29%  Similarity=0.293  Sum_probs=23.9

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      +++-.|++||.+|+|||||+|.|.+-..
T Consensus       353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~  380 (567)
T COG1132         353 EPGEKVAIVGPSGSGKSTLIKLLLRLYD  380 (567)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            3567789999999999999999998543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.30  E-value=0.15  Score=48.40  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.3

Q ss_pred             eEEEEeecCCCChhHHHHHhhcc
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      --|++||.+|+|||||+.+|-+-
T Consensus        31 E~VaiIG~SGaGKSTLLR~lngl   53 (258)
T COG3638          31 EMVAIIGPSGAGKSTLLRSLNGL   53 (258)
T ss_pred             cEEEEECCCCCcHHHHHHHHhcc
Confidence            34799999999999999999873

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=91.29  E-value=0.19  Score=46.13  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3457999999999999999999853

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=91.28  E-value=0.16  Score=47.05  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         35 GEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3457999999999999999999853

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=91.23  E-value=0.17  Score=46.91  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.++++|.+|+|||||++.|.+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3456799999999999999999986

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.21  E-value=0.17  Score=47.28  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.++++|.+|+|||||++.|.+-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         28 NKITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            445799999999999999999874

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=91.18  E-value=0.17  Score=53.26  Aligned_cols=28  Identities=25%  Similarity=0.240  Sum_probs=23.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      ++-.+++||.+|+|||||+|.|.+-...
T Consensus       346 ~g~~talvG~SGaGKSTLl~lL~G~~~~  373 (559)
T COG4988         346 AGQLTALVGASGAGKSTLLNLLLGFLAP  373 (559)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcCCC
Confidence            4456799999999999999999986543

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=91.14  E-value=0.17  Score=45.77  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          26 GEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCc
Confidence            4456899999999999999999853

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=91.14  E-value=0.17  Score=46.90  Aligned_cols=26  Identities=23%  Similarity=0.278  Sum_probs=22.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34567999999999999999999754

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.12  E-value=0.17  Score=47.22  Aligned_cols=24  Identities=13%  Similarity=0.357  Sum_probs=21.2

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.++++|.+|+|||||++.|.+-
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14262         29 NQITAIIGPSGCGKTTLLRSINRM   52 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            445799999999999999999974

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=91.08  E-value=0.28  Score=46.39  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=21.5

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ....|.|+|-+|+||||++++|+.
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~  149 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLE  149 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCccccchHHHHHhh
Confidence            356789999999999999999986

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=91.07  E-value=0.17  Score=47.53  Aligned_cols=26  Identities=31%  Similarity=0.484  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         29 PRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            34567999999999999999999853

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=91.06  E-value=0.19  Score=44.63  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=22.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.++++|.+|+|||||++.|.+..
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567999999999999999999853

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=91.06  E-value=0.18  Score=46.89  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          28 GELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4457999999999999999999854

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=91.05  E-value=0.16  Score=46.22  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             eEEEEeecCCCChhHHHHHhhccC
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      -.++++|.+|+|||||++.|.+..
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCC
Confidence            456999999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.02  E-value=0.24  Score=49.56  Aligned_cols=26  Identities=31%  Similarity=0.419  Sum_probs=22.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      -..++++||-+|.||||+||+|....
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~   45 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTD   45 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhh
Confidence            45789999999999999999998763

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.01  E-value=0.18  Score=47.08  Aligned_cols=26  Identities=15%  Similarity=0.273  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            34457999999999999999998753

>PRK09602 translation-associated GTPase; Reviewed

Probab=91.01  E-value=0.43  Score=48.41  Aligned_cols=56  Identities=21%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             CCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHH-HHHHHHHHHhh
Q 018454          242 KHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGS-LLSVLRQFARL  300 (355)
Q Consensus       242 ~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~-Ll~~L~q~~~~  300 (355)
                      ..+|+|+|+||+|+.....   +...+.+.....++.+||..+.++.. |.+.+.++++.
T Consensus       216 t~KPvI~VlNK~D~~~~~~---~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~  272 (396)
T PRK09602        216 ISKPMVIAANKADLPPAEE---NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPG  272 (396)
T ss_pred             cCCCEEEEEEchhcccchH---HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence            4699999999999874321   12222222233467889999999988 66777666553

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=91.01  E-value=0.29  Score=47.70  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..+.++|.+|+|||||+|+|.+.
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~  167 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDE  167 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcc
Confidence            4567899999999999999999863

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=90.99  E-value=0.19  Score=45.57  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.++++|.+|+|||||++.|.+.
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          25 KGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3456799999999999999999876

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=90.98  E-value=0.19  Score=46.46  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=22.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            34457999999999999999998753

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=90.98  E-value=0.17  Score=42.11  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.4

Q ss_pred             ceEEEEeecCCCChhHHHHHhh
Q 018454          306 AISVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      +--++++|.+++|||||++.|.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            3456999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=90.96  E-value=0.18  Score=47.68  Aligned_cols=26  Identities=23%  Similarity=0.439  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34567999999999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	355
1puj_A	282	Structure Of B. Subtilis Ylqf Gtpase Length = 282		1e-07
3cnl_A	262	Crystal Structure Of Gnp-Bound Ylqf From T. Maritim		5e-06

>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 19/129 (14%)
Query: 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP 273
           D+V +++DAR P  +R   +E  LK    +K  I+LLNK D   A  T+ W     + + 
Sbjct: 25  DIVYELVDARIPMSSRNPMIEDILK----NKPRIMLLNKADKADAAVTQQW----KEHFE 76
Query: 274 SLAFHA-SINKSFGKG--SLLSVLRQFARLKSDK--------QAISVGFVGYPNVGKSSV 322
           +    + SIN   G+G   ++   ++  + K D+        +AI    +G PNVGKS++
Sbjct: 77  NQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTL 136
Query: 323 INTLRTKNV 331
           IN L  KN+
Sbjct: 137 INRLAKKNI 145

>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima Length = 262

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 198 QSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257
           ++KR   +L +++++   VV+V DAR P  T  + ++         K  I+LLNK D+  
Sbjct: 10  KAKRQIKDLLRLVNT---VVEVRDARAPFATSAYGVD------FSRKETIILLNKVDIAD 60
Query: 258 AWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNV 317
              TK W+    K+   +        +  KG    VL    +L  D+ A  V  VG PN 
Sbjct: 61  EKTTKKWVEFFKKQGKRVI-------TTHKGEPRKVL--LKKLSFDRLA-RVLIVGVPNT 110
Query: 318 GKSSVINTLRTK 329
           GKS++IN L+ K
Sbjct: 111 GKSTIINKLKGK 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	5e-42
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	2e-38
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	1e-27
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	1e-23
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	1e-05
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	2e-05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	3e-05
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	3e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	9e-05
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	2e-04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	3e-04
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	8e-04

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score =  146 bits (371), Expect = 5e-42
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 19/134 (14%)

Query: 198 QSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257
           ++KR   +L ++++    VV+V DAR P  T  + ++         K  I+LLNK D+  
Sbjct: 10  KAKRQIKDLLRLVN---TVVEVRDARAPFATSAYGVD------FSRKETIILLNKVDIAD 60

Query: 258 AWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNV 317
              TK W+    K+   +      +K   +  LL       +L  D+    V  VG PN 
Sbjct: 61  EKTTKKWVEFFKKQGKRVIT---THKGEPRKVLL------KKLSFDR-LARVLIVGVPNT 110

Query: 318 GKSSVINTLRTKNV 331
           GKS++IN L+ K  
Sbjct: 111 GKSTIINKLKGKRA 124

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score =  137 bits (348), Expect = 2e-38
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 15/144 (10%)

Query: 197 GQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256
           G   +   E+ + +   D+V +++DAR P  +R   +E  L    K+K  I+LLNK D  
Sbjct: 8   GHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKA 63

Query: 257 PAWATKGWLRVLSKE-YPSLAFHASINKSFGKGSLLSVLRQFARLKSDK--------QAI 307
            A  T+ W      +   SL+ ++      G   ++   ++  + K D+        +AI
Sbjct: 64  DAAVTQQWKEHFENQGIRSLSINSV--NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121

Query: 308 SVGFVGYPNVGKSSVINTLRTKNV 331
               +G PNVGKS++IN L  KN+
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNI 145

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score =  110 bits (276), Expect = 1e-27
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 11/126 (8%)

Query: 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG- 263
            L+++ +S  +VV ++D  D  G+    L R          ++L+ NK DL+P       
Sbjct: 64  MLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAA----DNPILLVGNKADLLPRSVKYPK 119

Query: 264 ---WLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKS 320
              W+R +++E         +  +     +  V+     +   ++   V  VG  NVGKS
Sbjct: 120 LLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEA---INRYREGGDVYVVGCTNVGKS 176

Query: 321 SVINTL 326
           + IN +
Sbjct: 177 TFINRI 182

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 99.7 bits (248), Expect = 1e-23
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 17/129 (13%)

Query: 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG- 263
            L  +  S  +VV+++D  D  G+    L R +        ++L+ NK DL+P       
Sbjct: 62  ILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGN----NKVLLVGNKADLIPKSVKHDK 117

Query: 264 ---WLRVLSKEY---PSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNV 317
              W+R  +K+    P   F  S  K  G   L   +  +           V  VG  NV
Sbjct: 118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG------GKDVYVVGCTNV 171

Query: 318 GKSSVINTL 326
           GKS+ IN +
Sbjct: 172 GKSTFINRM 180

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 18/119 (15%)

Query: 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLR 266
              +  +D+++ +LD    +        R LK        + + NK D            
Sbjct: 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAI 366

Query: 267 VLSKEYPSLAFHA-----------SINKSFGKGS-------LLSVLRQFARLKSDKQAI 307
                   +   A            +               L++ LR +  L++   A+
Sbjct: 367 ADGTGTEVIGISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDAL 425

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 35/184 (19%)

Query: 191 HTM-FEKGQSKRIWGELYKVIDSSDVVVQVLDARD-PQGTR-------CHHL--ERHLKE 239
           H M FE G+ +  + ++  V +  D  V   D +D     +         H+   +    
Sbjct: 5   HHMDFETGEHQYQYKDILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 240 HCKHKHMILLLNKCDLVPAWATK------GWL-RVLSKEY--PSL---AFHASINKSFGK 287
                   LL  + ++V  +  +       +L   +  E   PS+    +    ++ +  
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 288 GSLLS---VLR--QFARLK----SDKQAISVGFVGYPNVGKSS-VINTLRTKNVILFFPA 337
             + +   V R   + +L+      + A +V   G    GK+   ++   +  V      
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 338 SVVW 341
            + W
Sbjct: 183 KIFW 186

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 55/366 (15%), Positives = 104/366 (28%), Gaps = 104/366 (28%)

Query: 17  HSLDANRTDGKSGSRSASTVRRLNMYKTRPKR---DRKGK----VLQH----------EF 59
           + +D N T       S++   R++  +   +R    +  +    VL +            
Sbjct: 207 YQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 60  QSKELPNTRIQPDRRWFGNTR----CVNQKQLEFFREELQSHMSSSYNVILREKKLPFSL 115
             K L  TR +    +          ++   +    +E++S +    +   R + LP   
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLP--- 319

Query: 116 LNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDAS- 174
                ++     L T P         +  R  L   D     K  +   D      ++S 
Sbjct: 320 -----REV----LTTNPR--RLSIIAESIRDGLATWDN---WKHVN--CDKLTTIIESSL 363

Query: 175 ---TSAEGVEGDGFRDLVRHTMFEKGQS------KRIWGELYKVIDSSDVVVQVLDARDP 225
                AE      F  L    +F             IW ++    D   VV ++      
Sbjct: 364 NVLEPAE--YRKMFDRLS---VFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKLHKYSL- 416

Query: 226 QGTRCHHLERHLKEHCKHKHMILLLNKC-------------------------DLVPAWA 260
                  +E+  KE       I L  K                          DL+P + 
Sbjct: 417 -------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 261 TKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKS 320
            + +       Y  +  H    +   + +L  ++  F   +  +Q I             
Sbjct: 470 DQYF-------YSHIGHHLKNIEHPERMTLFRMV--FLDFRFLEQKIR--HDSTAWNASG 518

Query: 321 SVINTL 326
           S++NTL
Sbjct: 519 SILNTL 524

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 21/118 (17%)

Query: 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLR 266
            + I+ +D+V+ VLDA  P        +R + E  K+K  ++++NK D+V     +    
Sbjct: 318 LQEIEKADIVLFVLDASSPL----DEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKN 373

Query: 267 VLSKEYPSLAFHA-----------SINKSFGK------GSLLSVLRQFARLKSDKQAI 307
            L  +   +   A           SI +   +       SL++ LRQ   L++ K  +
Sbjct: 374 KLGTDRHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHL 431

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 41/140 (29%)

Query: 210 IDSSDVVVQVLDAR------DPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG 263
           I  +D+V+ V+D +      D        L   L++       IL+ NK +       + 
Sbjct: 79  IREADLVLFVVDGKRGITKED------ESLADFLRKS--TVDTILVANKAE-----NLRE 125

Query: 264 WLRVLSKEYPSL---------AFHASINKSFGKGSLL-SVLRQFARLKSDKQA------- 306
           + R +  E  SL         A H          ++L +++++      D ++       
Sbjct: 126 FEREVKPELYSLGFGEPIPVSAEHNI-----NLDTMLETIIKKLEEKGLDLESKPEITDA 180

Query: 307 ISVGFVGYPNVGKSSVINTL 326
           I V  VG PNVGKS++ N +
Sbjct: 181 IKVAIVGRPNVGKSTLFNAI 200

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 35/134 (26%)

Query: 210 IDSSDVVVQVLDAR------DPQGTRCHHLERHLKEHCKHKHMILLLNKCD-------LV 256
           +D +DV++ +++ R      D        + + L      K ++L +NK D       + 
Sbjct: 80  MDEADVIIFMVNGREGVTAAD------EEVAKILYRT--KKPVVLAVNKLDNTEMRANIY 131

Query: 257 PAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLL----SVLRQFARLKSDKQAISVGFV 312
             ++  G      + YP    H       G G LL       +     K +++ I    +
Sbjct: 132 DFYSL-G----FGEPYPISGTHGL-----GLGDLLDAVAEHFKNIPETKYNEEVIQFCLI 181

Query: 313 GYPNVGKSSVINTL 326
           G PNVGKSS++N +
Sbjct: 182 GRPNVGKSSLVNAM 195

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW 259
            +  +++D+V+  +DA           ++ + E  KH+ +IL++NK DLV   
Sbjct: 298 RQAANTADLVLLTIDAATGW----TTGDQEIYEQVKHRPLILVMNKIDLVEKQ 346

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 43.1 bits (101), Expect = 9e-05
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 266 RVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL--KSDKQAISVGFVGYPNVGKSSVI 323
           +++S+E  +      I      G++       +    + D   ++V   G    GKSS I
Sbjct: 32  KIISQEILN-----LIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI 86

Query: 324 NTLR 327
           NTLR
Sbjct: 87  NTLR 90

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 13/83 (15%)

Query: 247 ILLLNKCDLVPAWATKGWLRVLSKEYPSL---AFHASINKSFGKGSLLSVLRQFARLKSD 303
           I+ + K DL+    T+  ++  +++Y ++    +  S         ++   +       D
Sbjct: 121 IICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQ-------D 173

Query: 304 KQAISVGFVGYPNVGKSSVINTL 326
           K   +V F G   VGKSS++N +
Sbjct: 174 K--TTV-FAGQSGVGKSSLLNAI 193

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 207 YKVIDSSDVVVQVLDARDPQGTRCHHL-ERHLKEHCKHKHMILLLNKCDLVPA 258
           ++ I+ +D V+ ++D           +    +        + ++ NK D+   
Sbjct: 78  WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE 130

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM--ILLLNKCDLVP 257
            +V   +D  + V D+           E  +    K   +  ++++NK D++ 
Sbjct: 108 RRVFYRADCGILVTDSAPTPY------EDDVVNLFKEMEIPFVVVVNKIDVLG 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.93
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.92
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.92
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.79
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.77
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.69
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.68
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.65
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.63
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.62
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.21
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.01
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.82
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.78
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.77
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.76
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.63
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.62
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.62
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.61
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.6
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.58
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.56
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.55
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.54
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.53
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.53
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.52
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.52
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.51
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.5
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.5
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.49
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.49
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.48
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.47
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.47
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.46
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.46
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.46
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.45
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.45
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.44
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.44
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.44
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.44
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.43
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.43
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.43
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.42
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.42
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.41
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.41
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.41
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.41
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.41
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.41
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.4
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.4
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.4
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.39
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.39
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.39
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.39
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.39
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.38
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.38
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.37
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.37
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.37
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.37
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.37
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.36
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.36
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.36
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.36
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.35
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.35
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.35
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.35
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.35
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.35
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.35
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.35
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.34
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.34
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.34
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.34
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.33
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.33
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.32
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.32
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.32
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.32
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.32
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.31
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.31
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.31
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.31
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.31
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.31
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.3
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.3
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.29
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.29
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.29
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.29
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.29
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.29
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.28
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.27
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.26
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.25
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.23
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.22
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.22
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.22
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.21
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.21
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.21
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.21
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.2
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.19
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.18
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.18
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.17
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.17
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.16
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.46
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.16
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.16
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.15
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.15
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.15
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.13
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.11
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.11
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.11
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.09
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.09
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.06
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.06
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.05
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.05
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.03
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.02
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.02
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.0
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.99
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.98
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.98
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.98
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.97
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.95
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	97.93
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.93
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.93
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.92
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.92
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.91
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.91
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.9
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.9
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.89
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.86
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.86
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.84
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.84
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.84
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.84
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.83
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.81
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.79
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.78
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.78
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.77
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.75
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.73
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.73
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.72
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.71
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.69
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.69
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.68
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.67
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.67
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.67
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.67
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.64
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.64
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	97.63
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.63
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.63
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.62
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.61
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.61
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.61
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.57
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.57
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.56
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.56
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.55
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.54
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.54
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.52
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.51
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.49
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.48
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.47
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.47
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	97.46
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.46
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.46
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.45
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.45
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.44
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.44
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	97.44
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.43
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.43
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.43
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	97.42
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.41
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.4
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.39
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.38
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.37
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.36
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.35
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.35
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.35
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.34
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.32
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.32
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.31
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.31
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.31
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.3
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.3
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.29
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.28
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.28
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.27
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.26
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.26
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.26
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.25
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.25
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.21
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.21
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.2
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.2
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.19
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	97.19
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.17
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.17
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.12
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.1
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.09
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.09
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.06
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	97.04
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.03
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.03
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.03
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	97.01
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.01
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.01
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.97
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.97
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	96.96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.94
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	96.91
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.89
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.88
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.87
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.86
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.83
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.83
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.79
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	96.77
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.76
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.74
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.71
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	96.69
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.65
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	96.62
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.59
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	96.55
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.53
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.49
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.49
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.48
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	96.47
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.47
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.45
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.44
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	96.44
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.42
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.42
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.37
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.33
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	96.32
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	96.3
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	96.28
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.27
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.26
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.23
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.13
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.1
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	96.05
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	96.01
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.99
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.95
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.9
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.83
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	95.77
1wb1_A	482	Translation elongation factor SELB; selenocysteine	95.73
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	95.71
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	95.7
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.38
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.3
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.24
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	95.02
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.91
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	94.55
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.41
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.35
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	94.32
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.25
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.25
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	94.23
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.19
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.94
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	93.91
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	93.7
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	93.67
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	93.62
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	93.54
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	93.42
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	93.36
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.23
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.19
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	93.17
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.15
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	93.09
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	93.08
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	92.99
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	92.94
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	92.88
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	92.79
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.77
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	92.75
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	92.74
2eyu_A	261	Twitching motility protein PILT; pilus retraction	92.6
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	92.48
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	92.43
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	92.33
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	92.32
1g6h_A	257	High-affinity branched-chain amino acid transport	92.3
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	92.28
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	92.23
2ghi_A	260	Transport protein; multidrug resistance protein, M	92.23
1sgw_A	214	Putative ABC transporter; structural genomics, P p	92.23
1b0u_A	262	Histidine permease; ABC transporter, transport pro	92.18
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	92.16
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	92.09
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	92.08
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	91.97
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	91.97
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	91.96
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	91.96
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	91.94
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	91.9
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	91.89
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	91.87
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.85
1ji0_A	240	ABC transporter; ATP binding protein, structural g	91.83
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	91.78
4a74_A	231	DNA repair and recombination protein RADA; hydrola	91.74
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	91.72
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	91.71
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	91.71
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	91.69
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	91.68
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	91.66
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	91.63
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	91.57
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	91.56
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	91.42
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	91.38
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	91.38
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	91.36
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	91.29
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	91.29
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	91.27
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	91.26
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	91.19
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	91.18
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	91.16
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	91.16
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	91.06
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	91.05
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	90.92
2ewv_A	372	Twitching motility protein PILT; pilus retraction	90.91
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	90.9
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	90.88
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	90.83
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	90.82
2chg_A	226	Replication factor C small subunit; DNA-binding pr	90.68
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	90.65
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	90.6
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	90.55
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	90.53
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	90.42
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	90.4
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	90.4
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	90.33
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	90.29
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	90.24
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	90.18
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	90.14
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	90.13
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	90.06
3bos_A	242	Putative DNA replication factor; P-loop containing	90.05
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	89.89
2og2_A	359	Putative signal recognition particle receptor; nuc	89.79
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	89.71
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	89.55
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	89.05
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	89.02
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	89.0
1tue_A	212	Replication protein E1; helicase, replication, E1E	88.92
3co5_A	143	Putative two-component system transcriptional RES	88.92
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	88.87
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	88.87
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	88.8
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	88.64
1p9r_A	418	General secretion pathway protein E; bacterial typ	88.62
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	88.59
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	88.55
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	88.55
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	88.51
3kta_A	182	Chromosome segregation protein SMC; structural mai	88.36
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	88.3
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	88.27
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	88.24
2qgz_A	308	Helicase loader, putative primosome component; str	88.22
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	88.15
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	88.1
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	88.09
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	88.02
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	88.02
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	88.02
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	88.0
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	87.97
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	87.95
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	87.94
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	87.82
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	87.67
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	87.65
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	87.61
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	87.58
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	87.52
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	87.51
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	87.51
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	87.47
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	87.41
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	87.36
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	87.31
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	87.07
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	87.04
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	87.03
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	86.99
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	86.89
2cvh_A	220	DNA repair and recombination protein RADB; filamen	86.87
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	86.83
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	86.82
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	86.77
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	86.77
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	86.63
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	86.61
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	86.5
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	86.36
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	86.34
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	86.28
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	86.27
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	86.23
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	86.21
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	86.03
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	85.72
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	85.71

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.93  E-value=6.4e-26  Score=216.02  Aligned_cols=143  Identities=27%  Similarity=0.326  Sum_probs=114.3

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCce
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL  275 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~  275 (355)
                      +||+.++++++.+.++.+|+||+|+||++|.++.++.+.+++    .++|.++|+||+||++....+.|.+++.... ..
T Consensus         7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g-~~   81 (282)
T 1puj_A            7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQG-IR   81 (282)
T ss_dssp             --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTT-CC
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcC-Cc
Confidence            678889999999999999999999999999999988888887    4799999999999999877889999986532 24


Q ss_pred             EEEeeecCCCChHHHHHHHHHHHhhhc--------cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454          276 AFHASINKSFGKGSLLSVLRQFARLKS--------DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW  343 (355)
Q Consensus       276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~~~--------~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~  343 (355)
                      ++.+|+.++.|+++|++.+.+++....        ...+++|++||+||||||||||+|.+...+.|+++||+|++
T Consensus        82 ~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~  157 (282)
T 1puj_A           82 SLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS  157 (282)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-----------
T ss_pred             EEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeee
Confidence            667899999999999998888775321        24568999999999999999999999999999999999954

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.92  E-value=1.2e-25  Score=221.54  Aligned_cols=181  Identities=24%  Similarity=0.288  Sum_probs=106.9

Q ss_pred             ccCCCCCCCCCCCCcCCHHHHHHH---HhhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcC
Q 018454          136 AFGPKGKRKRPKLLASDYESLVKR---ADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDS  212 (355)
Q Consensus       136 ~fg~~~qrkrp~l~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~  212 (355)
                      ..|...|-..|....--.++..++   ...|||||+++||+.+..+....+.|..+                 +..+.+.
T Consensus         9 gcG~~lq~~~~~~~gy~p~~~~~~~~~~~~C~RC~~l~hy~~~~~v~~~~e~f~~~-----------------L~~~~~~   71 (369)
T 3ec1_A            9 GCGAAIQFENPKNAGYAPKSVLEKDAEEVICQRCFRLKHYNEVQDVPLDDDDFLSM-----------------LHRIGES   71 (369)
T ss_dssp             --------------------------------------------------CHHHHH-----------------HHHHHHH
T ss_pred             CCCceeecCCCCCCCCCChHHhcCCCCCEEchhHHHhhccccccCCcCCHHHHHHH-----------------HHHhhcc
Confidence            344455555554444333332222   36899999999999887665444444332                 2234578


Q ss_pred             CCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh----hHHHHHHHHhhhCC---ceEEEeeecCCC
Q 018454          213 SDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSF  285 (355)
Q Consensus       213 sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~----~~~~w~~~l~~~~p---~~~f~vSa~~~~  285 (355)
                      +|+||+|+|++||.++..+.+.+++    .++|+++|+||+||++..    ....|...+.+...   ..++.+||++++
T Consensus        72 ~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~  147 (369)
T 3ec1_A           72 KALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGI  147 (369)
T ss_dssp             CCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTB
T ss_pred             CcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCC
Confidence            8999999999999988888887776    378999999999999863    34567665433322   367889999999


Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc-----CccccCCCCCeeEE
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK-----NVILFFPASVVWYW  343 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~-----~~~~vs~iPGtT~~  343 (355)
                      |+++|++.|.++..      +..|+++|.||||||||||+|.+.     ..+.+++.||+|++
T Consensus       148 gi~~L~~~I~~~~~------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~  204 (369)
T 3ec1_A          148 GMAKVMEAINRYRE------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD  204 (369)
T ss_dssp             THHHHHHHHHHHHT------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE
T ss_pred             CHHHHHHHHHhhcc------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe
Confidence            99999999987752      457899999999999999999987     68899999999944

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.92  E-value=1.4e-25  Score=221.07  Aligned_cols=182  Identities=25%  Similarity=0.275  Sum_probs=100.9

Q ss_pred             cccCCCCCCCCCCCCcCCHHH-HHHHHhhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCC
Q 018454          135 DAFGPKGKRKRPKLLASDYES-LVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSS  213 (355)
Q Consensus       135 ~~fg~~~qrkrp~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~s  213 (355)
                      ...|...|-..|....-..++ +.+....|||||+++||+.+..+..+.+.|..+                 +..+...+
T Consensus         8 ~gcG~~lq~~~~~~~gy~p~~~~~~~~~~C~Rc~~l~hy~~~~~v~~~~e~f~~~-----------------l~~i~~~~   70 (368)
T 3h2y_A            8 IGCGVEIQTEDKNEVGYAPASSLEKEQVICQRCFRLKHYNEIQDVSLTDDDFLRI-----------------LNGIGKSD   70 (368)
T ss_dssp             ------------------------------------------------CHHHHHH-----------------HHHHHHSC
T ss_pred             CCCcceeEcCCCCCCCCCChHHccCCCcEEhhhhhhhccCccccCCCCHHHHHHH-----------------HHHHhccC
Confidence            344555555555554433333 223456899999999999887665444444322                 22345678


Q ss_pred             CEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh----hHHHHHHHHhhhCC---ceEEEeeecCCCC
Q 018454          214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSFG  286 (355)
Q Consensus       214 DvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~----~~~~w~~~l~~~~p---~~~f~vSa~~~~G  286 (355)
                      |+||+|+|++||..+....+.+++    .++|+++|+||+||++..    ....|...+.+...   ..++.+||+++.|
T Consensus        71 ~~il~VvD~~d~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~g  146 (368)
T 3h2y_A           71 ALVVKIVDIFDFNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQG  146 (368)
T ss_dssp             CEEEEEEETTSHHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTT
T ss_pred             cEEEEEEECCCCcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcC
Confidence            899999999998766666666654    479999999999998754    35667665544333   2678899999999


Q ss_pred             hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc------CccccCCCCCeeEE
Q 018454          287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK------NVILFFPASVVWYW  343 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~------~~~~vs~iPGtT~~  343 (355)
                      +++|++.|.++.      .+..|+++|.||||||||||+|++.      ..+.+++.||||++
T Consensus       147 i~~L~~~l~~~~------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~  203 (368)
T 3h2y_A          147 IAELADAIEYYR------GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD  203 (368)
T ss_dssp             HHHHHHHHHHHH------TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C
T ss_pred             HHHHHhhhhhhc------ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc
Confidence            999999998775      2467899999999999999999985      36779999999954

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.89  E-value=2.4e-24  Score=203.10  Aligned_cols=130  Identities=26%  Similarity=0.303  Sum_probs=101.8

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-CCc
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-YPS  274 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-~p~  274 (355)
                      +||+.++++++.+.++++|+||+|+||++|..+.++.++ ++     ++|.++|+||+||++....+.|.+++... ++ 
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~-   77 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQGKR-   77 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCC-
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHcCCe-
Confidence            688889999999999999999999999999999887766 44     69999999999999987788999998764 33 


Q ss_pred             eEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeE
Q 018454          275 LAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWY  342 (355)
Q Consensus       275 ~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~  342 (355)
                       + .+|+.++.|+++|++.|.+.+        +++++||.||||||||||+|.+...+.++++||+|+
T Consensus        78 -v-~iSa~~~~gi~~L~~~l~~~~--------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~  135 (262)
T 3cnl_A           78 -V-ITTHKGEPRKVLLKKLSFDRL--------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITK  135 (262)
T ss_dssp             -E-EECCTTSCHHHHHHHHCCCTT--------CEEEEEESTTSSHHHHHHHHHTTCC----------C
T ss_pred             -E-EEECCCCcCHHHHHHHHHHhh--------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCcc
Confidence             3 679999999999888775432        689999999999999999999999999999999984

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.79  E-value=5.7e-19  Score=177.10  Aligned_cols=151  Identities=21%  Similarity=0.206  Sum_probs=109.3

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      ..+..++...++.+|+||+|+|++++....+..+..++..  .++|+++|+||+|+........+.+.+ ...-..++.+
T Consensus        69 ~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~i  145 (439)
T 1mky_A           69 QKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFEREVKPELY-SLGFGEPIPV  145 (439)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEEC
T ss_pred             HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEE
Confidence            3456677788999999999999999887777777777765  479999999999985431111112222 2221245788


Q ss_pred             eecCCCChHHHHHHHHHHHhhhc--------cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          280 SINKSFGKGSLLSVLRQFARLKS--------DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~~~--------~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      ||++|.|+++|++.|.+.++...        +...++|++||.||||||||||+|.+.....++++||+|++.....+.+
T Consensus       146 SA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~  225 (439)
T 1mky_A          146 SAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI  225 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE
T ss_pred             eccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE
Confidence            99999999999999987776432        1245899999999999999999999999889999999997755444444


Q ss_pred             cc
Q 018454          352 FG  353 (355)
Q Consensus       352 ~~  353 (355)
                      -|
T Consensus       226 ~g  227 (439)
T 1mky_A          226 DG  227 (439)
T ss_dssp             TT
T ss_pred             CC
Confidence            33

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.77  E-value=5.4e-19  Score=177.13  Aligned_cols=149  Identities=19%  Similarity=0.220  Sum_probs=104.7

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      .++..++...++.+|+||+|+|++++....+..+.+++..  .++|+++|+||+|+.+...  ...+.+ ......++.+
T Consensus        70 ~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~i  144 (436)
T 2hjg_A           70 AQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPI  144 (436)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-GGSSCCCEEC
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEE
Confidence            3455667778899999999999999887777777777764  5899999999999976421  111111 1111246788


Q ss_pred             eecCCCChHHHHHHHHHHHhhhc----cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeecc
Q 018454          280 SINKSFGKGSLLSVLRQFARLKS----DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG  353 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~~~----~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~~  353 (355)
                      ||.+|.|+++|++.|.+.++...    +...++|++||.||||||||||+|++...+.++++||+|++.+...+.+-|
T Consensus       145 SA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~  222 (436)
T 2hjg_A          145 SGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ  222 (436)
T ss_dssp             BTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT
T ss_pred             eCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC
Confidence            99999999999999988776422    235689999999999999999999999999999999999887766665543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.69  E-value=3.1e-17  Score=165.25  Aligned_cols=147  Identities=19%  Similarity=0.231  Sum_probs=104.0

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      .++..++...++.+|+||+|+|++++....+..+.+++..  .++|+|+|+||+|+....  ..+.+.+. ......+.+
T Consensus        90 ~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~--~~~~e~~~-lg~~~~~~i  164 (456)
T 4dcu_A           90 AQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMR--ANIYDFYS-LGFGEPYPI  164 (456)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----------CCSGG-GSSSSEEEC
T ss_pred             HHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhh--hhHHHHHH-cCCCceEEe
Confidence            5566677788899999999999999887777788887765  689999999999987532  11112221 112245688


Q ss_pred             eecCCCChHHHHHHHHHHHhhhc----cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          280 SINKSFGKGSLLSVLRQFARLKS----DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~~~----~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      ||.++.|+++|++.+.+..+...    .....+|+++|.||||||||||+|.+.....++++||+|++.+...+.+
T Consensus       165 SA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~  240 (456)
T 4dcu_A          165 SGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY  240 (456)
T ss_dssp             CTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE
T ss_pred             ecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE
Confidence            99999999999999987765321    2456899999999999999999999998899999999997755444433

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.68  E-value=1.3e-17  Score=160.76  Aligned_cols=118  Identities=20%  Similarity=0.200  Sum_probs=89.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh----HHHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA----TKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .++++|+||+|+|+++|..+.+ .++++|.. +..+++++||+||+||++...    ...|.+.|.... ..++.+|+.+
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g-~~v~~~sa~~  160 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-YDVYLTSSKD  160 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-CCEEECCHHH
T ss_pred             HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-CeEEEEecCC
Confidence            7999999999999999998877 78888864 346899999999999998744    678888886543 2456779999


Q ss_pred             CCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC
Q 018454          284 SFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS  338 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP  338 (355)
                      +.|+++|++.+          .+-.++|+|.||||||||||+|.+.....++.++
T Consensus       161 ~~g~~~L~~~~----------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~  205 (307)
T 1t9h_A          161 QDSLADIIPHF----------QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  205 (307)
T ss_dssp             HTTCTTTGGGG----------TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             CCCHHHHHhhc----------CCCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence            99988876653          2346799999999999999999998878888777

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.65  E-value=8e-16  Score=147.36  Aligned_cols=118  Identities=19%  Similarity=0.231  Sum_probs=92.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+.++|+||+|+|+++|..+.. .+++++.. +..++|+|+|+||+||++...   ...|.+.+... ...++.+||+++
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~-g~~~~~~SA~~g  153 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA-GYDVLKVSAKTG  153 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT-TCEEEECCTTTC
T ss_pred             HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC-CCeEEEEECCCC
Confidence            6899999999999999875543 46666643 236899999999999998652   45676666543 345788899999


Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV  339 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG  339 (355)
                      .|+++|++.+.          +..++++|.+|||||||||+|. ...+.++.+..
T Consensus       154 ~gi~~L~~~l~----------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~  197 (302)
T 2yv5_A          154 EGIDELVDYLE----------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSE  197 (302)
T ss_dssp             TTHHHHHHHTT----------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred             CCHHHHHhhcc----------CcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence            99999887763          3356999999999999999999 87788888875

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.63  E-value=1.3e-15  Score=149.75  Aligned_cols=121  Identities=23%  Similarity=0.186  Sum_probs=93.1

Q ss_pred             HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEee
Q 018454          205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~vS  280 (355)
                      ++..+++++|+|++| |+++|..+.. .++++|.. +..++++|||+||+||++...   ...|..+|.... ..++.+|
T Consensus       123 ~~~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G-~~v~~~S  199 (358)
T 2rcn_A          123 GVKPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIG-YRVLMVS  199 (358)
T ss_dssp             -CEEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTT-CCEEECB
T ss_pred             HHHHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCC-CcEEEEe
Confidence            445578999999955 7888876655 68888753 346899999999999998765   567888886542 2367789


Q ss_pred             ecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCc-cccCCCC
Q 018454          281 INKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNV-ILFFPAS  338 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-~~vs~iP  338 (355)
                      +.++.|+++|...+          .+-.++|+|.||||||||||.|.+... +.++.++
T Consensus       200 a~~~~gl~~L~~~~----------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~  248 (358)
T 2rcn_A          200 SHTQDGLKPLEEAL----------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS  248 (358)
T ss_dssp             TTTTBTHHHHHHHH----------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred             cCCCcCHHHHHHhc----------CCCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence            99999998877653          234679999999999999999999887 7777765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.62  E-value=2.3e-15  Score=143.92  Aligned_cols=118  Identities=19%  Similarity=0.224  Sum_probs=87.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+.++|++|+|+|+++|..+. ..+.+++.. ...+.|+|||+||+||.+...   ...|.+.+...  ..+|.+||+++
T Consensus        81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~--~~~~~~SAktg  157 (301)
T 1u0l_A           81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL--YPIVKTSAKTG  157 (301)
T ss_dssp             TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT--SCEEECCTTTC
T ss_pred             ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh--CcEEEEECCCC
Confidence            688999999999999987443 345555543 125799999999999987643   34566655432  55788999999


Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV  339 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG  339 (355)
                      .|+++|++.+.          +-.++++|.+|+|||||||+|.+...+.++.++.
T Consensus       158 ~gv~~lf~~l~----------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~  202 (301)
T 1u0l_A          158 MGIEELKEYLK----------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  202 (301)
T ss_dssp             TTHHHHHHHHS----------SSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             cCHHHHHHHhc----------CCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence            99999988763          2356899999999999999999988777777664

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.21  E-value=2.9e-13  Score=132.00  Aligned_cols=129  Identities=18%  Similarity=0.103  Sum_probs=93.0

Q ss_pred             CEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh-hCCceEEEeeecCCCChHHHHH
Q 018454          214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK-EYPSLAFHASINKSFGKGSLLS  292 (355)
Q Consensus       214 DvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~-~~p~~~f~vSa~~~~Gi~~Ll~  292 (355)
                      |.+..|+|++.++++.++.+.+++.....++++++++||+|+++......|..++.. .++.....+++..+.+.+.+.+
T Consensus        59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  138 (357)
T 2e87_A           59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVAS  138 (357)
T ss_dssp             HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            455567788888788888888777544356888999999999999988999999876 3233333345555566666655


Q ss_pred             HHHHHHhhh--------------c-cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454          293 VLRQFARLK--------------S-DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW  343 (355)
Q Consensus       293 ~L~q~~~~~--------------~-~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~  343 (355)
                      .+.+.....              . +.....|+++|+||||||||||+|.+.. ..+++.|++|++
T Consensus       139 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~  203 (357)
T 2e87_A          139 VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRG  203 (357)
T ss_dssp             HHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeec
Confidence            543332110              1 2456889999999999999999999877 667888988743

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.01  E-value=3.7e-10  Score=97.97  Aligned_cols=107  Identities=18%  Similarity=0.039  Sum_probs=63.9

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|++|+|+|+.++...  ..+..++..   .  ..+.|+++|+||+||.+..........+.......++.+||+
T Consensus        83 ~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (195)
T 1x3s_A           83 SYYRGAQGVILVYDVTRRDTF--VKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK  160 (195)
T ss_dssp             HHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCC
Confidence            356889999999999886432  222333322   1  146899999999999654332222333333445567889999


Q ss_pred             CCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhH
Q 018454          283 KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSS  321 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSS  321 (355)
                      ++.|+++|++.|.+.+......     +--+.+|+||||
T Consensus       161 ~~~gi~~l~~~l~~~~~~~~~~-----~~~~~~n~gkSs  194 (195)
T 1x3s_A          161 TCDGVQCAFEELVEKIIQTPGL-----WESENQNSGPSS  194 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHTSGGG-----TCC---------
T ss_pred             CCCCHHHHHHHHHHHHHhhhhh-----hcccccCCCCCC
Confidence            9999999999988776532211     223567999997

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.82  E-value=1.7e-08  Score=89.88  Aligned_cols=97  Identities=15%  Similarity=0.111  Sum_probs=71.3

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH----HHHHhhh------
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW----LRVLSKE------  271 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w----~~~l~~~------  271 (355)
                      ++...+.....+|+||+|+|+.++.......+..++..  .++|+|+|+||+|+.+.......    .+.+...      
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA  182 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence            44455555667899999999998776666666666654  57899999999999986543332    3333332      


Q ss_pred             CCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          272 YPSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       272 ~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ....+|.+||+++.|+++|++.|.+.++.
T Consensus       183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          183 GKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             SCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            34557889999999999999999887753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.78  E-value=2.1e-08  Score=86.63  Aligned_cols=97  Identities=20%  Similarity=0.147  Sum_probs=70.8

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHH----hhhCCceE
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL----SKEYPSLA  276 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l----~~~~p~~~  276 (355)
                      .++...+.....+|+|++|+|+.++.......+..++..  .+.|+++|+||+|+.+........+.+    .......+
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI  170 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence            345555566677799999999988766655566666665  479999999999998755433333322    22233567


Q ss_pred             EEeeecCCCChHHHHHHHHHHHh
Q 018454          277 FHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       277 f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +.+||+++.|+++|++.|.+.+.
T Consensus       171 ~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          171 IPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHC
T ss_pred             EEEecCCCCCHHHHHHHHHHHhh
Confidence            88999999999999999987653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.77  E-value=1.6e-08  Score=96.48  Aligned_cols=99  Identities=18%  Similarity=0.253  Sum_probs=78.2

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHH-HHHHHhhcCCCcEEEEEeccCCC-ChhhHHHHHHHHhhhCC--ce
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL-ERHLKEHCKHKHMILLLNKCDLV-PAWATKGWLRVLSKEYP--SL  275 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l-~~~L~~~~~~k~vILVlNK~DLv-p~~~~~~w~~~l~~~~p--~~  275 (355)
                      ..+...+...+..+|+||+|+|+.++....+..+ ...+..  .+.|+++|+||+|++ +......+...+...++  ..
T Consensus        80 ~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~  157 (308)
T 3iev_A           80 HSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE  157 (308)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe
Confidence            3455666778899999999999998876655554 455543  478999999999998 66666777777776653  56


Q ss_pred             EEEeeecCCCChHHHHHHHHHHHhh
Q 018454          276 AFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      +|.+||+++.|+++|++.|.++++.
T Consensus       158 i~~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          158 IVPISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhCcc
Confidence            7889999999999999999988754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.76  E-value=4e-08  Score=85.27  Aligned_cols=95  Identities=16%  Similarity=0.136  Sum_probs=68.6

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHH----HHHHHHhhhCCceEE
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK----GWLRVLSKEYPSLAF  277 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~----~w~~~l~~~~p~~~f  277 (355)
                      ++...+.....+|++|+|+|+.++.......+.+++..  .+.|+++|+||+|+.+.....    .+.+.+.......++
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence            34444444556699999999998876655556666654  578999999999998765433    233334333345678


Q ss_pred             EeeecCCCChHHHHHHHHHHH
Q 018454          278 HASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      .+|++++.|+++|++.|.+.+
T Consensus       173 ~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          173 LFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEccCCCCHHHHHHHHHHHh
Confidence            899999999999999987665

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.63  E-value=1.6e-07  Score=93.70  Aligned_cols=128  Identities=20%  Similarity=0.235  Sum_probs=88.9

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh--HHHHHHHHhhh----CCceEEEe
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKE----YPSLAFHA  279 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~----~p~~~f~v  279 (355)
                      +...+..+|++++|+|+.++....+..+..++..  .++++++|+||+|++....  ...+.+.+...    ....++.+
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT  334 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence            3456788999999999998776555555555554  5799999999999986432  23343333322    23456789


Q ss_pred             eecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEe
Q 018454          280 SINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLL  349 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~  349 (355)
                      ||++|.|+++|++.+.+.......    .+         +|+.+|.+++.... ..|.|---+-.|++-.
T Consensus       335 SA~~g~gv~~l~~~i~~~~~~~~~----~i---------~t~~ln~~l~~~~~-~~~~~~~~ki~y~~q~  390 (439)
T 1mky_A          335 SADKGWNIDRMIDAMNLAYASYTT----KV---------PSSAINSALQKVLA-FTNLPRGLKIFFGVQV  390 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHTC----CC---------CHHHHHHHHHHHHT-TCCCSTTCCEEEEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHHHhhcc----cC---------CHHHHHHHHHHHHH-cCCCCCCcEEEEEEec
Confidence            999999999999999877654321    11         69999999987655 4455632355566544

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.62  E-value=1.6e-08  Score=86.89  Aligned_cols=101  Identities=15%  Similarity=0.032  Sum_probs=63.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHH---HHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~---L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|++|+|+|+.++...  ..+..+   +..  ...+.|+++|+||+||.... ....-...+...+....+.+||+
T Consensus        74 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  151 (181)
T 3t5g_A           74 YSIDINGYILVYSVTSIKSF--EVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK  151 (181)
T ss_dssp             GTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecC
Confidence            56789999999999876422  122222   222  12478999999999996432 11222333334445567889999


Q ss_pred             CCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhH
Q 018454          283 KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSS  321 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSS  321 (355)
                      ++.|++++++.|.+.+...          -|..++||||
T Consensus       152 ~~~~v~~l~~~l~~~~~~~----------~~~~~~gkss  180 (181)
T 3t5g_A          152 ENQTAVDVFRRIILEAEKM----------DGACSQGKSS  180 (181)
T ss_dssp             SHHHHHHHHHHHHHHHHTC---------------CCBSC
T ss_pred             CCCCHHHHHHHHHHHHHHh----------cCCcccCcCC
Confidence            9999999999988776421          2667889987

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.62  E-value=7.2e-08  Score=80.60  Aligned_cols=91  Identities=20%  Similarity=0.161  Sum_probs=65.2

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeee
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ........+..+|++|+|+|+.++.......+..++..  .+.|+++|+||+|+.....   ....+........+.+|+
T Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~Sa  143 (161)
T 2dyk_A           69 IQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHEL---YLGPLYGLGFGDPIPTSS  143 (161)
T ss_dssp             HHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGG---GCGGGGGGSSCSCEECBT
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchH---hHHHHHhCCCCCeEEEec
Confidence            33445567889999999999999866555566666654  5799999999999976521   111122212124678999


Q ss_pred             cCCCChHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQF  297 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~  297 (355)
                      +++.|+++|++.|.+.
T Consensus       144 ~~~~gv~~l~~~l~~~  159 (161)
T 2dyk_A          144 EHARGLEELLEAIWER  159 (161)
T ss_dssp             TTTBSHHHHHHHHHHH
T ss_pred             ccCCChHHHHHHHHHh
Confidence            9999999999988765

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.61  E-value=9.5e-08  Score=82.80  Aligned_cols=94  Identities=11%  Similarity=0.124  Sum_probs=62.8

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeecCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ..+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||.+.... ......+...+...++.+||+++
T Consensus        84 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  163 (196)
T 3tkl_A           84 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA  163 (196)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTC
T ss_pred             HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            46788999999999998643211 122222322 1247899999999999764321 12233344444456788999999


Q ss_pred             CChHHHHHHHHHHHhhh
Q 018454          285 FGKGSLLSVLRQFARLK  301 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~  301 (355)
                      .|++++++.|.+.+...
T Consensus       164 ~gv~~l~~~l~~~i~~~  180 (196)
T 3tkl_A          164 TNVEQSFMTMAAEIKKR  180 (196)
T ss_dssp             TTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999988776543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.60  E-value=2.3e-07  Score=93.12  Aligned_cols=134  Identities=18%  Similarity=0.164  Sum_probs=89.1

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHhhhC----C
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEY----P  273 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~~----p  273 (355)
                      ..........+..+|++|+|+|+.++....+..+..++..  .++|+|+|+||+||++..  ..++..+.+....    .
T Consensus       265 ~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  342 (456)
T 4dcu_A          265 KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY  342 (456)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTT
T ss_pred             HHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCC
Confidence            3334445567899999999999999877767777777765  579999999999998642  1233333333332    2


Q ss_pred             ceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCC-C-CCee-EEEEEEE
Q 018454          274 SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-A-SVVW-YWFYCQL  348 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~-i-PGtT-~~~y~~l  348 (355)
                      ..++.+||++|.|+++|++.|.+.+.....+  +           .++.+|.++........| . .|.. +-.|++-
T Consensus       343 ~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~--~-----------~t~~ln~~l~~~~~~~~pp~~~~~~~ki~y~~q  407 (456)
T 4dcu_A          343 APILFMSALTKKRIHTLMPAIIKASENHSLR--V-----------QTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQ  407 (456)
T ss_dssp             SCEEECCTTTCTTGGGHHHHHHHHHHHHTCC--C-----------CHHHHHHHHHHHHHHSCCCEETTEECCEEEEEE
T ss_pred             CCEEEEcCCCCcCHHHHHHHHHHHHHHhccc--C-----------CHHHHHHHHHHHHHhCCCCCCCCceeeEEEEec
Confidence            4577899999999999999998777543321  1           356778777543332222 1 2444 5555543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.58  E-value=8.7e-08  Score=91.42  Aligned_cols=97  Identities=20%  Similarity=0.094  Sum_probs=70.9

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEe
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~v  279 (355)
                      .+...+...+..+|++|+|+|+.++....+..+.+.+.....+.|+|+|+||+|+.+... ...+.+.+  .....++.+
T Consensus        75 ~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~i  152 (301)
T 1wf3_A           75 FMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRML  152 (301)
T ss_dssp             HHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEEC
T ss_pred             HHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEE
Confidence            355667778999999999999998866555555555554223789999999999986543 33344433  112357889


Q ss_pred             eecCCCChHHHHHHHHHHHh
Q 018454          280 SINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ||+++.|+++|++.|.+.++
T Consensus       153 SA~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          153 SALDERQVAELKADLLALMP  172 (301)
T ss_dssp             CTTCHHHHHHHHHHHHTTCC
T ss_pred             eCCCCCCHHHHHHHHHHhcc
Confidence            99999999999999987654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.56  E-value=1.6e-07  Score=79.23  Aligned_cols=92  Identities=20%  Similarity=0.203  Sum_probs=62.5

Q ss_pred             hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~vS  280 (355)
                      ..+..+|++|+|+|+.++....  ...+..++.. ...+.|+++|+||+||.+......+...+...    ....++.+|
T Consensus        70 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  149 (171)
T 1upt_A           70 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS  149 (171)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECc
Confidence            3567899999999999875321  1122222221 12578999999999998753334444444321    234577899


Q ss_pred             ecCCCChHHHHHHHHHHHh
Q 018454          281 INKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~  299 (355)
                      |+++.|+++|++.|.+.+.
T Consensus       150 a~~~~gi~~l~~~l~~~i~  168 (171)
T 1upt_A          150 ATKGTGLDEAMEWLVETLK  168 (171)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHh
Confidence            9999999999999887653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.55  E-value=2e-07  Score=80.94  Aligned_cols=91  Identities=21%  Similarity=0.235  Sum_probs=63.1

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--c-------CCCcEEEEEeccCCCChhhHHHHHHHHh-----h
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--C-------KHKHMILLLNKCDLVPAWATKGWLRVLS-----K  270 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--~-------~~k~vILVlNK~DLvp~~~~~~w~~~l~-----~  270 (355)
                      ..+..+|++|+|+|+.++...  ..+..++..   .  .       .+.|+|+|+||+||........+...+.     .
T Consensus        82 ~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  159 (199)
T 4bas_A           82 TYYDNIDAVIFVVDSSDHLRL--CVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMG  159 (199)
T ss_dssp             GGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHT
T ss_pred             HHHhcCCEEEEEEECCcHHHH--HHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhcc
Confidence            357889999999999987432  222223222   1  0       2789999999999987643333433332     2


Q ss_pred             hCCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          271 EYPSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       271 ~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      .....+|.+||+++.|+++|++.|.+.+..
T Consensus       160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          160 DHPFVIFASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             TSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence            244567889999999999999999877654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.54  E-value=1.3e-07  Score=83.10  Aligned_cols=93  Identities=16%  Similarity=0.150  Sum_probs=61.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      ..+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||.+..........+...+...+|.+|++++.
T Consensus        88 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  167 (213)
T 3cph_A           88 AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDD  167 (213)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            35688999999999987643211 1222223221 236899999999999543332223333333334457889999999


Q ss_pred             ChHHHHHHHHHHHhh
Q 018454          286 GKGSLLSVLRQFARL  300 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~  300 (355)
                      |+++|++.|.+.+..
T Consensus       168 gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          168 NVNEIFFTLAKLIQE  182 (213)
T ss_dssp             SSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999998877654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.53  E-value=2.7e-09  Score=104.75  Aligned_cols=137  Identities=18%  Similarity=0.146  Sum_probs=62.9

Q ss_pred             ccccchHHHHHHHHH--hhhcCCCEEEEEecCCCCCCC-c-chHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHH
Q 018454          193 MFEKGQSKRIWGELY--KVIDSSDVVVQVLDARDPQGT-R-CHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL  268 (355)
Q Consensus       193 ~f~~~~s~ri~~el~--kvi~~sDvVL~VvDardp~~s-~-~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l  268 (355)
                      .+.+.|.+.+++.+.  ++++..|+||.|+|+|.|..+ . ...+.+ +.-   .+|            ..  ..|....
T Consensus        65 ~l~p~q~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~la~-l~~---~~~------------rl--~~~~~l~  126 (364)
T 2qtf_A           65 QLKPRHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELAR-LKY---ELP------------II--KETYTKS  126 (364)
T ss_dssp             CCCHHHHHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHHHH-HHH---HHH------------HH--HHC----
T ss_pred             CCCHHHHHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHHHH-Hhh---hch------------hh--hhhhHHH
Confidence            356788888888887  799999999999999998654 2 122222 211   111            11  2343222


Q ss_pred             hhhCCceEEE------eeecCCCC---hHHHHHHHHHHHhhh------ccccceE-EEEeecCCCChhHHHHHhhccCcc
Q 018454          269 SKEYPSLAFH------ASINKSFG---KGSLLSVLRQFARLK------SDKQAIS-VGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       269 ~~~~p~~~f~------vSa~~~~G---i~~Ll~~L~q~~~~~------~~~~~i~-V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      ... ..+.|.      +.......   +..|...|.+.....      ..+.++. |++||+||||||||||+|.+... 
T Consensus       127 ~~~-~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-  204 (364)
T 2qtf_A          127 KIG-EQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-  204 (364)
T ss_dssp             ------------------CHHHHHHHHHHHHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC---
T ss_pred             Hhc-CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-
Confidence            111 111111      00000000   112222222221100      1123455 99999999999999999998774 


Q ss_pred             ccCCCCCeeEEEEEEEe
Q 018454          333 LFFPASVVWYWFYCQLL  349 (355)
Q Consensus       333 ~vs~iPGtT~~~y~~l~  349 (355)
                      .+++.||+|++.+..-+
T Consensus       205 ~~~~~~~~T~d~~~~~i  221 (364)
T 2qtf_A          205 KVDTKLFTTMSPKRYAI  221 (364)
T ss_dssp             ---------CCSCEEEE
T ss_pred             cccCCcccccCCEEEEE
Confidence            67788888855444333

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.53  E-value=3.1e-08  Score=97.81  Aligned_cols=46  Identities=30%  Similarity=0.404  Sum_probs=40.4

Q ss_pred             eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeecc
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG  353 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~~  353 (355)
                      .+|++||+||||||||+|+|.+.+ ..++++||||++-....+.|-|
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~  118 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKG  118 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETT
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCC
Confidence            589999999999999999999876 7789999999887777777754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.52  E-value=5.8e-07  Score=89.65  Aligned_cols=128  Identities=18%  Similarity=0.165  Sum_probs=85.6

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh--HHHHHHHHhhh----CCceEEEe
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKE----YPSLAFHA  279 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~----~p~~~f~v  279 (355)
                      ....+..+|++|+|+|+.++....+..+..++..  .++++|+|+||+||++...  ..+..+.+...    ....++.+
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  328 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM  328 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence            4457889999999999999887666666666654  5899999999999986432  22333333332    23457789


Q ss_pred             eecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCC-CC-Cee-EEEEEEE
Q 018454          280 SINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-AS-VVW-YWFYCQL  348 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~-iP-GtT-~~~y~~l  348 (355)
                      ||++|.|+++|++.+.+.+.....+  +           +++.+|.++........| .+ |-. +-.|++-
T Consensus       329 SA~tg~~v~~l~~~i~~~~~~~~~~--~-----------~t~~ln~~l~~~~~~~~pp~~~~~~~~i~y~~q  387 (436)
T 2hjg_A          329 SALTKKRIHTLMPAIIKASENHSLR--V-----------QTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQ  387 (436)
T ss_dssp             CTTTCTTGGGHHHHHHHHHHHHTCC--C-----------CHHHHHHHHHHHHHHSCCCEETTEECCEEEEEE
T ss_pred             ecccCCCHHHHHHHHHHHHHHhhcC--C-----------CHHHHHHHHHHHHHhCCCCccCCcceeEEeEec
Confidence            9999999999999988776533211  1           367788887654333322 11 433 5566553

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.52  E-value=2.5e-07  Score=79.78  Aligned_cols=90  Identities=17%  Similarity=0.147  Sum_probs=62.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc----hHHHHHHHh---hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCc-eEEEee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC----HHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPS-LAFHAS  280 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~----~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~-~~f~vS  280 (355)
                      .+..+|++|+|+|+.++....+    ..+..++..   ...+.|+++|+||+||.+....+...+.+ ..+.. ..+.+|
T Consensus        94 ~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~S  172 (198)
T 3t1o_A           94 ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVV-DPEGKFPVLEAV  172 (198)
T ss_dssp             HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHH-CTTCCSCEEECB
T ss_pred             HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHH-HhcCCceEEEEe
Confidence            6789999999999986532222    233334432   12578999999999997653333333333 33444 678899


Q ss_pred             ecCCCChHHHHHHHHHHHh
Q 018454          281 INKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~  299 (355)
                      |+++.|++++++.|.+.+.
T Consensus       173 a~~~~gv~~l~~~l~~~i~  191 (198)
T 3t1o_A          173 ATEGKGVFETLKEVSRLVL  191 (198)
T ss_dssp             GGGTBTHHHHHHHHHHHHH
T ss_pred             cCCCcCHHHHHHHHHHHHH
Confidence            9999999999998876654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.51  E-value=1.2e-07  Score=82.69  Aligned_cols=91  Identities=18%  Similarity=0.085  Sum_probs=62.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCCh---hhHHHHHHHHhhhCCce-EEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA---WATKGWLRVLSKEYPSL-AFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~---~~~~~w~~~l~~~~p~~-~f~vSa~  282 (355)
                      .+..+|++|+|+|+.++.....  ..+...+.....+.|+++|+||+||...   .........+....... .+.+||+
T Consensus        91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  170 (194)
T 3reg_A           91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV  170 (194)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred             hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence            6778999999999998743222  2333444444457899999999999753   12222223333333333 7889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|++++++.|.+.+.
T Consensus       171 ~~~gi~~l~~~l~~~i~  187 (194)
T 3reg_A          171 AKIGLNEVFEKSVDCIF  187 (194)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999877653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.50  E-value=2e-07  Score=78.22  Aligned_cols=89  Identities=15%  Similarity=0.098  Sum_probs=61.2

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFH  278 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~  278 (355)
                      ..+..+|++|+|+|+.++...  ..+..++..     ...+.|+++|+||+||.+......+...+...    ....++.
T Consensus        63 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (164)
T 1r8s_A           63 HYFQNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA  140 (164)
T ss_dssp             HHTTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred             HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEE
Confidence            367899999999999987422  223333322     12478999999999997653334444443322    2234678


Q ss_pred             eeecCCCChHHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      +||+++.|+++|++.|.+.+
T Consensus       141 ~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A          141 TCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             CBTTTTBTHHHHHHHHHHHC
T ss_pred             cccCCCcCHHHHHHHHHHHH
Confidence            99999999999999987654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.50  E-value=1.9e-07  Score=78.50  Aligned_cols=92  Identities=16%  Similarity=0.149  Sum_probs=61.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFG  286 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~G  286 (355)
                      .+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||............+.......++.+||+++.|
T Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  151 (170)
T 1g16_A           72 YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDN  151 (170)
T ss_dssp             HHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            5678999999999987643211 1222223221 2478999999999995433322233333333345678899999999


Q ss_pred             hHHHHHHHHHHHhh
Q 018454          287 KGSLLSVLRQFARL  300 (355)
Q Consensus       287 i~~Ll~~L~q~~~~  300 (355)
                      +++|++.|.+.+..
T Consensus       152 v~~l~~~l~~~~~~  165 (170)
T 1g16_A          152 VNEIFFTLAKLIQE  165 (170)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998877643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.49  E-value=5.2e-07  Score=89.08  Aligned_cols=98  Identities=15%  Similarity=0.154  Sum_probs=67.5

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----C--Cc
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----Y--PS  274 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~--p~  274 (355)
                      +.......+..+|++|+|+|+.++. ..........+.. ...+|+|+|+||+||++......+.+.+...    .  ..
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  166 (403)
T 3sjy_A           88 LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENV  166 (403)
T ss_dssp             GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTC
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCC
Confidence            4455666788999999999999875 2222222223332 2346899999999999865444443333322    1  34


Q ss_pred             eEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          275 LAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       275 ~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      .++.+||+++.|+++|++.|.+.++.
T Consensus       167 ~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          167 PIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCcChHHHHHHHHHhCCC
Confidence            57889999999999999999987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.49  E-value=2.2e-07  Score=77.37  Aligned_cols=90  Identities=16%  Similarity=0.165  Sum_probs=60.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|.+++|+|+.++..... ..+...+...  ..+.|+++|+||+|+.+..........+...+...++.+|++++.
T Consensus        71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  150 (166)
T 2ce2_X           71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQ  150 (166)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCT
T ss_pred             hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCC
Confidence            5667999999999987642211 1222222221  137899999999999874333333334444444567889999999


Q ss_pred             ChHHHHHHHHHHH
Q 018454          286 GKGSLLSVLRQFA  298 (355)
Q Consensus       286 Gi~~Ll~~L~q~~  298 (355)
                      |++++++.|.+.+
T Consensus       151 gi~~l~~~l~~~~  163 (166)
T 2ce2_X          151 GVEDAFYTLVREI  163 (166)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999987665

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.48  E-value=2.3e-07  Score=80.30  Aligned_cols=89  Identities=18%  Similarity=0.140  Sum_probs=61.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEe
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHA  279 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~v  279 (355)
                      .+..+|++|+|+|+.++...  ..+..++..     ...+.|+++|+||+||.+......+...+...    ....++.+
T Consensus        86 ~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (189)
T 2x77_A           86 YFSDTDAVIYVVDSTDRDRM--GVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKS  163 (189)
T ss_dssp             SSTTCCEEEEEEETTCCTTH--HHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred             HhhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEc
Confidence            56789999999999987532  222233322     12478999999999998653333343433221    23457789


Q ss_pred             eecCCCChHHHHHHHHHHHh
Q 018454          280 SINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ||+++.|+++|++.|.+.+.
T Consensus       164 Sa~~~~gi~~l~~~l~~~i~  183 (189)
T 2x77_A          164 SSKTGDGLVEGMDWLVERLR  183 (189)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCccCHHHHHHHHHHHHH
Confidence            99999999999999987765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.47  E-value=2.6e-07  Score=79.31  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=62.0

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc--CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeee
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC--KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~--~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ....+..+|++|+|+|+.++..... ..+...+....  .+.|+++|+||+||.+.. ........+.......++.+|+
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence            4457889999999999988653222 12222233221  478999999999997532 1112222232333445788999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +++.|+++|++.|.+.+.
T Consensus       167 ~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999998876654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.47  E-value=3.7e-07  Score=78.68  Aligned_cols=90  Identities=18%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFH  278 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~  278 (355)
                      ..+..+|++|+|+|+.++...  ..+..++..     ...+.|+++|+||+||..........+.+..    .....++.
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T 1ksh_A           81 NYFESTDGLIWVVDSADRQRM--QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQG  158 (186)
T ss_dssp             GGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEE
Confidence            467899999999999987532  222223322     1257899999999999865433444444432    12345778


Q ss_pred             eeecCCCChHHHHHHHHHHHh
Q 018454          279 ASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +||+++.|+++|++.|.+.+.
T Consensus       159 ~Sa~~~~gi~~l~~~l~~~i~  179 (186)
T 1ksh_A          159 CSAVTGEDLLPGIDWLLDDIS  179 (186)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999987764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.46  E-value=3.6e-07  Score=79.12  Aligned_cols=89  Identities=13%  Similarity=0.116  Sum_probs=62.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--cCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEEe
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHA  279 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~v  279 (355)
                      .+..+|++|+|+|+.++...  ..+..++..   .  ..+.|+++|+||+||..........+.+..    .....++.+
T Consensus        80 ~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  157 (187)
T 1zj6_A           80 YYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC  157 (187)
T ss_dssp             HHTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEEC
T ss_pred             HhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEc
Confidence            56889999999999987532  223333322   1  257899999999999764333334444332    123467889


Q ss_pred             eecCCCChHHHHHHHHHHHh
Q 018454          280 SINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ||+++.|+++|++.|.+.+.
T Consensus       158 Sa~~g~gi~~l~~~l~~~~~  177 (187)
T 1zj6_A          158 CALTGEGLCQGLEWMMSRLK  177 (187)
T ss_dssp             BTTTTBTHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999987764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.46  E-value=2.2e-07  Score=78.94  Aligned_cols=89  Identities=13%  Similarity=0.163  Sum_probs=60.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHH---HHhhcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKEHCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~---L~~~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|++|+|+|+.++...  ..+..+   +.....+.|+|+|+||+|+.+.... ..-...+.......++.+||+++
T Consensus        78 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (181)
T 3tw8_B           78 YYRGTHGVIVVYDVTSAESF--VNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKEN  155 (181)
T ss_dssp             GGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTT
T ss_pred             HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCC
Confidence            57889999999999986422  222333   3333457899999999998754321 11122232333446788999999


Q ss_pred             CChHHHHHHHHHHHh
Q 018454          285 FGKGSLLSVLRQFAR  299 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~  299 (355)
                      .|+++|++.|.+.+.
T Consensus       156 ~gi~~l~~~l~~~~~  170 (181)
T 3tw8_B          156 VNVEEMFNCITELVL  170 (181)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999877654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.46  E-value=4.7e-07  Score=77.01  Aligned_cols=89  Identities=19%  Similarity=0.196  Sum_probs=60.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh------CC--ceEEEee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE------YP--SLAFHAS  280 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~------~p--~~~f~vS  280 (355)
                      .+..+|++|+|+|+.++...........+..  .+.|+++|+||+||.... .......+...      +.  ..++.+|
T Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (178)
T 2lkc_A           75 GAQVTDIVILVVAADDGVMPQTVEAINHAKA--ANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLS  151 (178)
T ss_dssp             SCCCCCEEEEEEETTCCCCHHHHHHHHHHGG--GSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred             HHhhCCEEEEEEECCCCCcHHHHHHHHHHHh--CCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence            5678999999999988754333333333332  578999999999998632 12222223221      11  3577899


Q ss_pred             ecCCCChHHHHHHHHHHHhh
Q 018454          281 INKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      |+++.|+++|++.|.+.+..
T Consensus       152 a~~~~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          152 AKTKEGLDHLLEMILLVSEM  171 (178)
T ss_dssp             SSSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHhhhh
Confidence            99999999999998876643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.45  E-value=7.1e-07  Score=76.37  Aligned_cols=89  Identities=17%  Similarity=0.113  Sum_probs=61.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--cCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEe
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHA  279 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~v  279 (355)
                      .+..+|++|+|+|+.++...  ..+..++..   .  ..+.|+++|+||+||.+......+.+.+...    ....++.+
T Consensus        82 ~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  159 (183)
T 1moz_A           82 YYADTAAVIFVVDSTDKDRM--STASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS  159 (183)
T ss_dssp             TTTTEEEEEEEEETTCTTTH--HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEE
T ss_pred             HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEc
Confidence            56789999999999987432  233333332   1  3578999999999997643333444443321    22357789


Q ss_pred             eecCCCChHHHHHHHHHHHh
Q 018454          280 SINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ||+++.|+++|++.|.+.+.
T Consensus       160 Sa~~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          160 SAIKGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             BGGGTBTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999887654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.45  E-value=2.2e-07  Score=81.28  Aligned_cols=92  Identities=12%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhh-------------HHHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------~~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++......  .+...+.....+.|+++|+||+||.+...             .......+...+.
T Consensus        88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (201)
T 2q3h_A           88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK  167 (201)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred             hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC
Confidence            57789999999999886532221  23333443345899999999999975321             1111222322233


Q ss_pred             c-eEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          274 S-LAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      . ..+.+||+++.|+++|++.|.+.+..
T Consensus       168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          168 AASYIECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            3 57889999999999999988766543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.44  E-value=3.1e-07  Score=95.71  Aligned_cols=124  Identities=15%  Similarity=0.086  Sum_probs=83.9

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh---hHHHHHHHHhhhCCceEEE
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW---ATKGWLRVLSKEYPSLAFH  278 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~---~~~~w~~~l~~~~p~~~f~  278 (355)
                      +..++...+..+|.+|+|+|+.+...............  .+.|+|+|+||+|+....   ....|.+.+. ..+..++.
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg-~~~~~vi~  160 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAADPERVAEEIEDIVG-IDATDAVR  160 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCCHHHHHHHHHHHTC-CCCTTCEE
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCcccccHHHHHHHHHHHhC-CCcceEEE
Confidence            33455667888999999999998765433332222222  578999999999997632   2233433331 11234688


Q ss_pred             eeecCCCChHHHHHHHHHHHhhhcc--ccceEEEEeec---CCCChhHHHHHhhc
Q 018454          279 ASINKSFGKGSLLSVLRQFARLKSD--KQAISVGFVGY---PNVGKSSVINTLRT  328 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~~~~~~--~~~i~V~~vG~---pNVGKSSLIN~Ll~  328 (355)
                      +||+++.|+++|++.|.+.++....  ..+....++..   |++|+.++++.+-+
T Consensus       161 vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG  215 (599)
T 3cb4_D          161 CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNG  215 (599)
T ss_dssp             ECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEES
T ss_pred             eecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeC
Confidence            9999999999999999888764321  23445445454   89999998887765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.44  E-value=3.2e-07  Score=79.62  Aligned_cols=91  Identities=16%  Similarity=0.160  Sum_probs=60.8

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhc---CCCcEEEEEeccCCCChhhHHHHHHHHh-hh---CCceEEE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHC---KHKHMILLLNKCDLVPAWATKGWLRVLS-KE---YPSLAFH  278 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~---~~k~vILVlNK~DLvp~~~~~~w~~~l~-~~---~p~~~f~  278 (355)
                      ..+..+|++|+|+|+.++.....  ..+..++....   .+.|+++|+||+||..........+.+. ..   ....++.
T Consensus        86 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T 2h57_A           86 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICA  165 (190)
T ss_dssp             GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEE
Confidence            35788999999999988632111  12222222111   4789999999999976433344444442 11   2345778


Q ss_pred             eeecCCCChHHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      +||+++.|+++|++.|.+.+
T Consensus       166 ~Sa~~~~gi~~l~~~l~~~i  185 (190)
T 2h57_A          166 SDAIKGEGLQEGVDWLQDQI  185 (190)
T ss_dssp             CBTTTTBTHHHHHHHHHHHC
T ss_pred             ccCCCCcCHHHHHHHHHHHH
Confidence            99999999999999987765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.44  E-value=8e-07  Score=79.95  Aligned_cols=91  Identities=13%  Similarity=0.099  Sum_probs=60.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch---HHHHHHHhhcCCCcEEEEEeccCCCChhhH----HHHHHHHhhhCC--ceEEEe
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH---HLERHLKEHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSKEYP--SLAFHA  279 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~---~l~~~L~~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~~~p--~~~f~v  279 (355)
                      ....+|++|+|+|+.++......   .+...+.....+.|+++|+||+||.+....    ......+.....  ..+|.+
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF  184 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence            46778999999999987654322   233333332237899999999999864321    112333333333  567889


Q ss_pred             eecCCCChHHHHHHHHHHHh
Q 018454          280 SINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ||+++.|+++|++.|.+.+.
T Consensus       185 SA~~g~gi~~l~~~l~~~i~  204 (228)
T 2qu8_A          185 STLTGVGVEQAKITACELLK  204 (228)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ecccCCCHHHHHHHHHHHHH
Confidence            99999999999998877654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.44  E-value=3.5e-07  Score=78.42  Aligned_cols=92  Identities=18%  Similarity=0.237  Sum_probs=62.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|++|+|+|+.++..... ..+...+..  ...+.|+++|+||+||.+..........+...+...++.+||+++.
T Consensus        72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  151 (189)
T 4dsu_A           72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQ  151 (189)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            4667999999999987642211 112222222  2247899999999999865443444444444445567889999999


Q ss_pred             ChHHHHHHHHHHHhh
Q 018454          286 GKGSLLSVLRQFARL  300 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~  300 (355)
                      |+++|++.|.+.+..
T Consensus       152 gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          152 GVDDAFYTLVREIRK  166 (189)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999988776653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.43  E-value=2.1e-07  Score=79.47  Aligned_cols=90  Identities=12%  Similarity=-0.008  Sum_probs=60.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhH-----------HHHHHHHhhhCC-c
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-----------KGWLRVLSKEYP-S  274 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-----------~~w~~~l~~~~p-~  274 (355)
                      .+..+|++|+|+|+.++......  .+...+.....+.|+++|+||+||.+....           ..-...+...+. .
T Consensus        76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  155 (182)
T 3bwd_D           76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP  155 (182)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCS
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCC
Confidence            57789999999999876432211  233344433357999999999999754321           111222333333 3


Q ss_pred             eEEEeeecCCCChHHHHHHHHHHH
Q 018454          275 LAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       275 ~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      ..+.+||+++.|+++|++.|.+.+
T Consensus       156 ~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          156 AYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999887654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.43  E-value=2.2e-07  Score=78.03  Aligned_cols=88  Identities=17%  Similarity=0.132  Sum_probs=60.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCCh----hhHHHHHHHHhhhCCceEEEe
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPA----WATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~----~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      ..+..+|++|+|+|+.++...  ..+..++   .. ...+.|+++|+||+|+.+.    .........+.......++.+
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~  148 (170)
T 1ek0_A           71 XYYRNAQAALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFET  148 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEEC
T ss_pred             hhhccCcEEEEEEecCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEE
Confidence            457889999999999886432  2233332   22 1257899999999999753    222333344444445567889


Q ss_pred             eecCCCChHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~  297 (355)
                      ||+++.|+++|++.|.+.
T Consensus       149 Sa~~~~gi~~l~~~l~~~  166 (170)
T 1ek0_A          149 SAKTGENVNDVFLGIGEK  166 (170)
T ss_dssp             CTTTCTTHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            999999999999988654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.43  E-value=3.5e-07  Score=77.94  Aligned_cols=94  Identities=13%  Similarity=0.095  Sum_probs=61.2

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ....+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||.+.. ........+.......++.+||+
T Consensus        77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  156 (180)
T 2g6b_A           77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK  156 (180)
T ss_dssp             --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence            3456789999999999988643211 1222223221 2578999999999998532 11222223333334457889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.+.
T Consensus       157 ~~~gi~~l~~~l~~~~~  173 (180)
T 2g6b_A          157 TGLNVDLAFTAIAKELK  173 (180)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999877654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.42  E-value=4.2e-07  Score=79.00  Aligned_cols=89  Identities=18%  Similarity=0.163  Sum_probs=61.2

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFH  278 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~  278 (355)
                      ..+..+|++|+|+|+.++...  ..+..++..     ...+.|+++|+||+||........+.+.+...    ....+|.
T Consensus        86 ~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (188)
T 1zd9_A           86 RYCRGVSAIVYMVDAADQEKI--EASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS  163 (188)
T ss_dssp             HHHTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHHccCCEEEEEEECCCHHHH--HHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEE
Confidence            456889999999999886432  222333322     12578999999999998653334444444321    2245678


Q ss_pred             eeecCCCChHHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      +||+++.|+++|++.|.+.+
T Consensus       164 ~SA~~g~gv~~l~~~l~~~~  183 (188)
T 1zd9_A          164 ISCKEKDNIDITLQWLIQHS  183 (188)
T ss_dssp             CCTTTCTTHHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            99999999999999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.42  E-value=6.4e-07  Score=79.35  Aligned_cols=94  Identities=14%  Similarity=0.136  Sum_probs=64.2

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhc-----CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEE
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC-----KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAF  277 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~-----~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f  277 (355)
                      ......+..+|++|+|+|+.++..  ...+..++....     .+.|+++|+||+||.... ........+.......++
T Consensus        99 ~~~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~  176 (217)
T 2f7s_A           99 SLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYF  176 (217)
T ss_dssp             HHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred             hHHHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEE
Confidence            334457789999999999987642  233444554311     468999999999997532 112233334344445678


Q ss_pred             EeeecCCCChHHHHHHHHHHHh
Q 018454          278 HASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      .+||+++.|+++|++.|.+.+.
T Consensus       177 ~~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          177 ETSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            8999999999999998876553

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.41  E-value=3.8e-07  Score=76.68  Aligned_cols=91  Identities=13%  Similarity=0.125  Sum_probs=62.0

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ..+..+|++|+|+|+.++..... ..+...+.. ..++.|+++|+||+||.... ........+.......++.+||+++
T Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  153 (170)
T 1z0j_A           74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNA  153 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred             hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence            35788999999999988653211 122233333 23568899999999997532 2233334444444566788999999


Q ss_pred             CChHHHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQFA  298 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~  298 (355)
                      .|+++|++.|.+.+
T Consensus       154 ~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          154 ININELFIEISRRI  167 (170)
T ss_dssp             BSHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999999987654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.41  E-value=2.1e-07  Score=80.30  Aligned_cols=90  Identities=16%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..++..+..+|++|+|+|+.++.......+...+... ..+.|+|+|+||+||.....  .    +.......++.+||+
T Consensus        75 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~----~~~~~~~~~~~~SA~  148 (172)
T 2gj8_A           75 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--G----MSEVNGHALIRLSAR  148 (172)
T ss_dssp             HHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--E----EEEETTEEEEECCTT
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--h----hhhccCCceEEEeCC
Confidence            3445567899999999999988765444444444432 23689999999999854211  0    111123456789999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.+.
T Consensus       149 ~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          149 TGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TCTTHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHhh
Confidence            99999999999987653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.41  E-value=5.1e-07  Score=76.98  Aligned_cols=91  Identities=14%  Similarity=0.106  Sum_probs=60.3

Q ss_pred             hhhcCCCEEEEEecCCCCCCCc-chHHHHHHHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTR-CHHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ..+..+|++|+|+|+.++.... ...+...+.. ...+.|+++|+||+||..... .......+.......++.+|++++
T Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  159 (181)
T 2efe_B           80 MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTA  159 (181)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSC
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCC
Confidence            3567899999999998764311 1122222322 124788999999999975321 122223333334556788999999


Q ss_pred             CChHHHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQFA  298 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~  298 (355)
                      .|+++|++.|.+.+
T Consensus       160 ~gi~~l~~~l~~~~  173 (181)
T 2efe_B          160 TNVKEIFYEIARRL  173 (181)
T ss_dssp             TTHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999987654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.41  E-value=2.1e-07  Score=79.67  Aligned_cols=91  Identities=16%  Similarity=0.123  Sum_probs=61.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhHH-------------HHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATK-------------GWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~-------------~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++......  .+...+.....+.|+++|+||+||.+.....             .....+.....
T Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  152 (186)
T 1mh1_A           73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  152 (186)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence            56789999999999876432221  2333444333489999999999997643211             11122333333


Q ss_pred             c-eEEEeeecCCCChHHHHHHHHHHHh
Q 018454          274 S-LAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      . .++.+||+++.|+++|++.|.+.+.
T Consensus       153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          153 AVKYLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence            3 6788999999999999999887663

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.41  E-value=8.8e-07  Score=76.32  Aligned_cols=87  Identities=14%  Similarity=0.125  Sum_probs=59.1

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--cCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFH  278 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~  278 (355)
                      ..+..+|++|+|+|+.++...  ..+..++..   .  ..+.|+++|+||+||........+.+.+..    .....++.
T Consensus        84 ~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  161 (181)
T 2h17_A           84 TYYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA  161 (181)
T ss_dssp             GGGTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEE
Confidence            357889999999999987432  223333322   1  357899999999999764323333333321    12345788


Q ss_pred             eeecCCCChHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q  296 (355)
                      +||+++.|+++|++.|.+
T Consensus       162 ~Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          162 CCALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             CBTTTTBTHHHHHHHHHT
T ss_pred             ccCCCCcCHHHHHHHHHh
Confidence            999999999999998753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.41  E-value=3.9e-07  Score=79.21  Aligned_cols=90  Identities=17%  Similarity=0.072  Sum_probs=59.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhH-------------HHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-------------KGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-------------~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++......  .+...+....++.|+++|+||+||.+....             ..-...+...+.
T Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (194)
T 2atx_A           86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG  165 (194)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence            57789999999999886432111  233344443358999999999999764211             111122222223


Q ss_pred             c-eEEEeeecCCCChHHHHHHHHHHH
Q 018454          274 S-LAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      . ..+.+||+++.|+++|++.|.+.+
T Consensus       166 ~~~~~~~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          166 ACCYVECSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            2 567899999999999999887654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.40  E-value=4.5e-07  Score=79.30  Aligned_cols=91  Identities=14%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc-----CCCcEEEEEeccCCCChhhHHHHHHHHhh-hCCceEEEeee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC-----KHKHMILLLNKCDLVPAWATKGWLRVLSK-EYPSLAFHASI  281 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~-----~~k~vILVlNK~DLvp~~~~~~w~~~l~~-~~p~~~f~vSa  281 (355)
                      .+..+|++|+|+|+.++..... ..+...+....     .+.|+++|+||+||............+.. .....+|.+||
T Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  156 (207)
T 1vg8_A           77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA  156 (207)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred             HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeC
Confidence            5678999999999988643211 11222222211     46899999999999854332222233322 34456788999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +++.|+++|++.|.+.+.
T Consensus       157 ~~g~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          157 KEAINVEQAFQTIARNAL  174 (207)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999998876654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.40  E-value=3.8e-07  Score=76.53  Aligned_cols=90  Identities=13%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSFG  286 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~G  286 (355)
                      .+..+|++|+|+|+.++..... ..+...+.....+.|+++|+||+||.+.. ........+........+.+|++++.|
T Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (168)
T 1z2a_A           74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN  153 (168)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            5678999999999988642211 12222232222578999999999997532 112222233333445678899999999


Q ss_pred             hHHHHHHHHHHH
Q 018454          287 KGSLLSVLRQFA  298 (355)
Q Consensus       287 i~~Ll~~L~q~~  298 (355)
                      +++|++.|.+.+
T Consensus       154 i~~l~~~l~~~~  165 (168)
T 1z2a_A          154 VSEVFKYLAEKH  165 (168)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.40  E-value=4.6e-07  Score=79.39  Aligned_cols=89  Identities=13%  Similarity=0.130  Sum_probs=61.3

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFH  278 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~  278 (355)
                      ..+..+|++|+|+|+.++...  ..+..++..     ...+.|+++|+||+||........+.+.+...    ....++.
T Consensus        92 ~~~~~~d~iilv~D~~~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  169 (192)
T 2b6h_A           92 HYFQNTQGLIFVVDSNDRERV--QESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQA  169 (192)
T ss_dssp             HHHHTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred             HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEE
Confidence            356789999999999987421  223333322     12478999999999997653334444444322    2234678


Q ss_pred             eeecCCCChHHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      +||+++.|+++|++.|.+.+
T Consensus       170 ~SA~~g~gi~~l~~~l~~~i  189 (192)
T 2b6h_A          170 TCATQGTGLYDGLDWLSHEL  189 (192)
T ss_dssp             CBTTTTBTHHHHHHHHHHHT
T ss_pred             CcCCCcCCHHHHHHHHHHHH
Confidence            99999999999999987654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.39  E-value=7.1e-07  Score=76.84  Aligned_cols=89  Identities=11%  Similarity=0.068  Sum_probs=58.9

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecC
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      ...+..+|++|+|+|+.++...  ..+..++..  ...+.|+++|+||+|+..... .+...+.+ ......++.+||++
T Consensus       111 ~~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~  187 (208)
T 3clv_A          111 PLYYRGATCAIVVFDISNSNTL--DRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYA-QDNNLLFIQTSAKT  187 (208)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHH-HHTTCEEEEECTTT
T ss_pred             HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHH-HHcCCcEEEEecCC
Confidence            3467899999999999887432  223333322  123589999999999432222 22233333 23455678899999


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      +.|+++|++.|.+.+
T Consensus       188 ~~~i~~l~~~l~~~~  202 (208)
T 3clv_A          188 GTNIKNIFYMLAEEI  202 (208)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999887655

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.39  E-value=4.6e-07  Score=77.71  Aligned_cols=90  Identities=16%  Similarity=0.168  Sum_probs=59.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec-C
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN-K  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~-~  283 (355)
                      .+..+|++|+|+|+.++..... ..+...+..  ...+.|+++|+||+||.... ........+...+....+.+|++ +
T Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  165 (183)
T 3kkq_A           86 YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDP  165 (183)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSS
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCC
Confidence            4667999999999988642211 122222222  23578999999999997522 22222333333344567889999 9


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      +.|++++++.|.+.+
T Consensus       166 ~~~v~~l~~~l~~~i  180 (183)
T 3kkq_A          166 PLNVDKTFHDLVRVI  180 (183)
T ss_dssp             CBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999987765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.39  E-value=5.4e-07  Score=78.08  Aligned_cols=92  Identities=16%  Similarity=0.156  Sum_probs=61.4

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ..+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||..... .......+...+...++.+||+++
T Consensus        90 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  169 (189)
T 2gf9_A           90 AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKEN  169 (189)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence            36788999999999987642211 1222233321 24789999999999975321 122233333334456788999999


Q ss_pred             CChHHHHHHHHHHHh
Q 018454          285 FGKGSLLSVLRQFAR  299 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~  299 (355)
                      .|+++|++.|.+.+.
T Consensus       170 ~gi~~l~~~l~~~i~  184 (189)
T 2gf9_A          170 INVKQVFERLVDVIC  184 (189)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999877654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.39  E-value=4.4e-07  Score=76.10  Aligned_cols=89  Identities=13%  Similarity=0.112  Sum_probs=59.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|++|+|+|+.++...  ..+..++.   . ..++.|+++|+||+||.+.... ..-...+........+.+||+
T Consensus        74 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  151 (170)
T 1r2q_A           74 MYYRGAQAAIVVYDITNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAK  151 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCC
Confidence            457889999999999876421  22233322   2 2357889999999999653211 111222333345667889999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      ++.|+++|++.|.+.+
T Consensus       152 ~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          152 TSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             TCTTHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.39  E-value=5.6e-07  Score=79.76  Aligned_cols=92  Identities=11%  Similarity=0.027  Sum_probs=62.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||... .........+.......+|.+||+++.
T Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  160 (218)
T 4djt_A           81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAH  160 (218)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTB
T ss_pred             HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCC
Confidence            4677999999999998653221 122222222 2235899999999999865 333344444545555668889999999


Q ss_pred             ChHHHHHHHHHHHhh
Q 018454          286 GKGSLLSVLRQFARL  300 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~  300 (355)
                      |++++++.|.+.+..
T Consensus       161 gv~~l~~~l~~~~~~  175 (218)
T 4djt_A          161 NFGLPFLHLARIFTG  175 (218)
T ss_dssp             TTTHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999877653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.38  E-value=5.4e-07  Score=77.88  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=60.3

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ..+..+|++|+|+|+.++..... ..+...+...  ..+.|+++|+||+|+.+..........+...+...++.+|++++
T Consensus        88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  167 (190)
T 3con_A           88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTR  167 (190)
T ss_dssp             --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred             HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            46788999999999988643211 1122222221  13789999999999976332222233333334456788999999


Q ss_pred             CChHHHHHHHHHHHh
Q 018454          285 FGKGSLLSVLRQFAR  299 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~  299 (355)
                      .|++++++.|.+.+.
T Consensus       168 ~gi~~l~~~l~~~~~  182 (190)
T 3con_A          168 QGVEDAFYTLVREIR  182 (190)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999877664

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.38  E-value=7.9e-07  Score=75.52  Aligned_cols=92  Identities=11%  Similarity=0.065  Sum_probs=60.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc-----CCCcEEEEEeccCCCChhhHHHHHHHHhh-hCCceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC-----KHKHMILLLNKCDLVPAWATKGWLRVLSK-EYPSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~-----~~k~vILVlNK~DLvp~~~~~~w~~~l~~-~~p~~~f~vS  280 (355)
                      ..+..+|++|+|+|+.++..... ..+...+....     .+.|+++|+||+|+........-...+.. .....++.+|
T Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  154 (177)
T 1wms_A           75 PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETS  154 (177)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECC
T ss_pred             HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEe
Confidence            46788999999999988653211 11222222211     56899999999999743322222222322 3445678899


Q ss_pred             ecCCCChHHHHHHHHHHHh
Q 018454          281 INKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++++.|++++++.|.+.+.
T Consensus       155 a~~~~gi~~l~~~l~~~~~  173 (177)
T 1wms_A          155 AKDATNVAAAFEEAVRRVL  173 (177)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999998876653

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.37  E-value=9.2e-07  Score=89.84  Aligned_cols=89  Identities=21%  Similarity=0.248  Sum_probs=63.0

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      +..+..+..+|++|+|+|+.++....+..+.+.+    .++|+|+|+||+||.+....+...+.+.  ....++.+||++
T Consensus       315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~~--~~~~~i~iSAkt  388 (482)
T 1xzp_A          315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKLG--TDRHMVKISALK  388 (482)
T ss_dssp             HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHHT--CSTTEEEEEGGG
T ss_pred             HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHHHhc--CCCcEEEEECCC
Confidence            3445678899999999999988654444444333    4789999999999975422222222221  223467889999


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      +.|+++|++.|.+..
T Consensus       389 g~Gi~eL~~~l~~~~  403 (482)
T 1xzp_A          389 GEGLEKLEESIYRET  403 (482)
T ss_dssp             TCCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999988764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.37  E-value=8.2e-07  Score=75.23  Aligned_cols=92  Identities=14%  Similarity=0.031  Sum_probs=60.0

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecC
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      ...+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||..... .......+.......++.+||++
T Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (179)
T 1z0f_A           82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKT  161 (179)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence            346778999999999988643211 112222322 225789999999999965321 11122223333445678899999


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      +.|++++++.|.+.+
T Consensus       162 ~~gi~~l~~~l~~~i  176 (179)
T 1z0f_A          162 GENVEDAFLEAAKKI  176 (179)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999887654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.37  E-value=4.6e-07  Score=78.60  Aligned_cols=91  Identities=13%  Similarity=0.177  Sum_probs=61.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|++|+|+|+.++..... ..+...+...   ..+.|+++|+||+||.+..........+...+...+|.+||+++
T Consensus        76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (199)
T 2gf0_A           76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMN  155 (199)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCC
Confidence            4577999999999987643211 1222233321   24689999999999986433222333333334456788999999


Q ss_pred             CChHHHHHHHHHHHh
Q 018454          285 FGKGSLLSVLRQFAR  299 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~  299 (355)
                      .|+++|++.|.+...
T Consensus       156 ~gi~~l~~~l~~~~~  170 (199)
T 2gf0_A          156 YNVKELFQELLTLET  170 (199)
T ss_dssp             BSHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999987764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.37  E-value=3e-07  Score=82.19  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCCh-------------hhHHHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~-------------~~~~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++.....  ..+...+.....+.|++||+||+||...             .........+.....
T Consensus        95 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  174 (214)
T 3q3j_B           95 CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG  174 (214)
T ss_dssp             GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred             HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence            5778999999999998753322  2333444444457899999999999652             111122223333334


Q ss_pred             c-eEEEeeecCCCC-hHHHHHHHHHHHh
Q 018454          274 S-LAFHASINKSFG-KGSLLSVLRQFAR  299 (355)
Q Consensus       274 ~-~~f~vSa~~~~G-i~~Ll~~L~q~~~  299 (355)
                      . ..+.+||+++.| +++|++.|.+.+.
T Consensus       175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~  202 (214)
T 3q3j_B          175 AEIYLEGSAFTSEKSIHSIFRTASMLCL  202 (214)
T ss_dssp             CSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence            4 678899999998 9999998877654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.37  E-value=6.2e-07  Score=75.57  Aligned_cols=88  Identities=17%  Similarity=0.139  Sum_probs=59.6

Q ss_pred             hcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc--CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454          210 IDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC--KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       210 i~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~--~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      +..+|++|+|+|+.++...  ..+..++.   ...  .+.|+++|+||+||.... ........+........+.+||++
T Consensus        73 ~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (169)
T 3q85_A           73 LQTGDAFLIVFSVTDRRSF--SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL  150 (169)
T ss_dssp             HHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             hccCCEEEEEEECCChHHH--HHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCcc
Confidence            5568999999999886432  12222222   221  378999999999997432 222333344444556678899999


Q ss_pred             CCChHHHHHHHHHHHh
Q 018454          284 SFGKGSLLSVLRQFAR  299 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~  299 (355)
                      +.|++++++.|.+.+.
T Consensus       151 ~~~v~~l~~~l~~~i~  166 (169)
T 3q85_A          151 HHNTRELFEGAVRQIR  166 (169)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999998876653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.36  E-value=5.2e-07  Score=78.70  Aligned_cols=92  Identities=12%  Similarity=0.075  Sum_probs=52.5

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc----CCCcEEEEEeccCCCC-hh-hHHHHHHHHhhhCCceE
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC----KHKHMILLLNKCDLVP-AW-ATKGWLRVLSKEYPSLA  276 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~----~~k~vILVlNK~DLvp-~~-~~~~w~~~l~~~~p~~~  276 (355)
                      ....+..+|++|+|+|+.++...  ..+..++.   ...    .+.|+++|+||+||.+ .. ........+...+...+
T Consensus        90 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~  167 (208)
T 2yc2_C           90 ISQYWNGVYYAILVFDVSSMESF--ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDF  167 (208)
T ss_dssp             HSTTCCCCCEEEEEEETTCHHHH--HHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEE
T ss_pred             HHHHHhhCcEEEEEEECCCHHHH--HHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEE
Confidence            34567899999999999886531  22333332   221    4789999999999986 22 21222233333445667


Q ss_pred             EEeeecC-CCChHHHHHHHHHHHh
Q 018454          277 FHASINK-SFGKGSLLSVLRQFAR  299 (355)
Q Consensus       277 f~vSa~~-~~Gi~~Ll~~L~q~~~  299 (355)
                      +.+|+++ +.|+++|++.|.+.+.
T Consensus       168 ~~~Sa~~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          168 FDVSANPPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             EECCC-------CHHHHHHHHHHH
T ss_pred             EEeccCCCCcCHHHHHHHHHHHHH
Confidence            8899999 9999999998876553

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.36  E-value=7.8e-07  Score=74.74  Aligned_cols=89  Identities=17%  Similarity=0.108  Sum_probs=58.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHH---h--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---E--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~---~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|++++|+|+.++...  ..+..++.   .  ...+.|+++|+||+||.+.. ........+........+.+||+
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  146 (166)
T 3q72_A           69 CMAMGDAYVIVYSVTDKGSF--EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA  146 (166)
T ss_dssp             ----CCEEEEEEETTCHHHH--HHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGG
T ss_pred             hhhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccC
Confidence            56789999999999987432  22333322   2  12478999999999998643 22333344444455667889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.+.
T Consensus       147 ~~~gi~~l~~~l~~~~~  163 (166)
T 3q72_A          147 LHHNVQALFEGVVRQIR  163 (166)
T ss_dssp             GTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999877653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.36  E-value=6.5e-07  Score=78.33  Aligned_cols=92  Identities=14%  Similarity=0.127  Sum_probs=62.1

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEee
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHL---KEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vS  280 (355)
                      ....+..+|++|+|+|+.++...  ..+..++   ... ..+.|+++|+||+||.... ........+...+...+|.+|
T Consensus        74 ~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
T 1zbd_A           74 TTAYYRGAMGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS  151 (203)
T ss_dssp             HHTTGGGCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred             HHHhhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence            34567899999999999886421  2233333   221 2478999999999997632 222223333333445678899


Q ss_pred             ecCCCChHHHHHHHHHHHh
Q 018454          281 INKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~  299 (355)
                      |+++.|+++|++.|.+.+.
T Consensus       152 a~~~~gi~~l~~~l~~~i~  170 (203)
T 1zbd_A          152 AKDNINVKQTFERLVDVIC  170 (203)
T ss_dssp             TTTTBSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999998876654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.36  E-value=6e-07  Score=76.99  Aligned_cols=90  Identities=16%  Similarity=0.201  Sum_probs=55.2

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|++|+|+|+.++...  ..+..++.   .. ..+.|+++|+||+||.... ....-...+.......++.+||+
T Consensus        76 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  153 (183)
T 2fu5_C           76 AYYRGAMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK  153 (183)
T ss_dssp             TTTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC-
T ss_pred             HHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence            357889999999999886431  23333332   21 2468999999999997532 11112222333334567889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.+.
T Consensus       154 ~~~~i~~l~~~l~~~i~  170 (183)
T 2fu5_C          154 ANINVENAFFTLARDIK  170 (183)
T ss_dssp             --CCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999998876654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.35  E-value=1.6e-06  Score=88.01  Aligned_cols=102  Identities=18%  Similarity=0.163  Sum_probs=70.3

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHH----HHHHHHhhh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK----GWLRVLSKE  271 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~----~w~~~l~~~  271 (355)
                      +|| .++.......+..+|++|+|+|+.++......+....+..  .+.|.|+|+||+|+++....+    +..+.+...
T Consensus        81 PGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~  157 (482)
T 1wb1_A           81 PGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST  157 (482)
T ss_dssp             SSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred             CCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence            444 3455666778899999999999998654333333333333  478889999999999754322    222333222


Q ss_pred             --C-CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          272 --Y-PSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       272 --~-p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                        + ...++.+||.++.|+++|++.|.+.++.
T Consensus       158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          158 HNLKNSSIIPISAKTGFGVDELKNLIITTLNN  189 (482)
T ss_dssp             SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence              1 3457889999999999999999887653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.35  E-value=6.5e-07  Score=76.82  Aligned_cols=94  Identities=11%  Similarity=-0.054  Sum_probs=61.4

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeec
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ....+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||.+.... ..-...+.......++.+||+
T Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (186)
T 2bme_A           76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSAL  155 (186)
T ss_dssp             HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCC
Confidence            4457889999999999988643211 112222222 2257899999999999653211 111122333345667889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|++++++.|.+.+.
T Consensus       156 ~~~gi~~l~~~l~~~~~  172 (186)
T 2bme_A          156 TGENVEEAFVQCARKIL  172 (186)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999998876654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.35  E-value=8e-07  Score=74.43  Aligned_cols=90  Identities=16%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhC-CceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEY-PSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~-p~~~f~vSa~~  283 (355)
                      .+..+|++|+|+|+.++..... ..+...+..  ...+.|+++|+||+||..... .......+...+ ...++.+||++
T Consensus        71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (167)
T 1c1y_A           71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCC
Confidence            4567999999999988642211 122222222  135799999999999975321 122223333333 45678899999


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      +.|+++|++.|.+.+
T Consensus       151 ~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          151 KINVNEIFYDLVRQI  165 (167)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999987654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.35  E-value=6.9e-07  Score=78.56  Aligned_cols=90  Identities=17%  Similarity=0.199  Sum_probs=60.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH-------------HHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------------LRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w-------------~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++.....  ..+...+.....+.|+++|+||+||.+.......             ...+.....
T Consensus        93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  172 (201)
T 2gco_A           93 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRIS  172 (201)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCC
Confidence            5788999999999987643211  2233444433357999999999999875321111             111222223


Q ss_pred             c-eEEEeeecCCCChHHHHHHHHHHH
Q 018454          274 S-LAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      . .++.+||+++.|+++|++.|.+.+
T Consensus       173 ~~~~~~~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          173 AFGYLECSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3 577899999999999999887654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.35  E-value=1.2e-06  Score=76.68  Aligned_cols=88  Identities=14%  Similarity=0.078  Sum_probs=60.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh---hcCCCcEEEEEeccCCCChhh--------HHHHHHHHhh----hCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDLVPAWA--------TKGWLRVLSK----EYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~--------~~~w~~~l~~----~~p  273 (355)
                      .+..+|++|+|+|+.++.......+..++..   ...+.|+++|+||+||++...        .......+..    ...
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence            5678999999999998732233444455543   235889999999999987431        1112233333    344


Q ss_pred             ceEEEeeecCCCChHHHHHHHHHH
Q 018454          274 SLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      ...+.+||++ .|++++++.|.+.
T Consensus       172 ~~~~e~Sa~~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          172 LSFYLTSIYD-HSIFEAFSKVVQK  194 (196)
T ss_dssp             EEEEEECTTS-THHHHHHHHHHHH
T ss_pred             cceEEEEech-hhHHHHHHHHHHH
Confidence            5677899999 9999999887653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.35  E-value=6.4e-07  Score=76.16  Aligned_cols=91  Identities=14%  Similarity=-0.026  Sum_probs=58.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh---cCCCc-EEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH---CKHKH-MILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~---~~~k~-vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|++|+|+|+.++..... ..+...+...   ..+.| +++|+||+||.... ........+........+.+||+
T Consensus        76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (178)
T 2hxs_A           76 YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAK  155 (178)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTT
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCC
Confidence            5788999999999988653211 1222222221   12566 78999999997532 11222223333334567889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|++++++.|.+.+.
T Consensus       156 ~~~gi~~l~~~l~~~~~  172 (178)
T 2hxs_A          156 TGDSVFLCFQKVAAEIL  172 (178)
T ss_dssp             TCTTHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999877653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.35  E-value=8.7e-07  Score=74.94  Aligned_cols=92  Identities=17%  Similarity=0.161  Sum_probs=58.7

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      ..+..+|++|+|+|+.++..... ..+...+...  ..+.|+++|+||+||.+... .......+...+....+.+||++
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  152 (175)
T 2nzj_A           73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATL  152 (175)
T ss_dssp             HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTT
T ss_pred             hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCC
Confidence            35678999999999987643211 1222223321  23789999999999976321 11122223333345678899999


Q ss_pred             CCChHHHHHHHHHHHh
Q 018454          284 SFGKGSLLSVLRQFAR  299 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~  299 (355)
                      |.|+++|++.|.+.+.
T Consensus       153 g~gi~~l~~~l~~~~~  168 (175)
T 2nzj_A          153 QHNVAELFEGVVRQLR  168 (175)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999877654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.35  E-value=9.3e-07  Score=77.96  Aligned_cols=92  Identities=14%  Similarity=0.070  Sum_probs=60.4

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCc-eEEEeeecC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPS-LAFHASINK  283 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~-~~f~vSa~~  283 (355)
                      ..+..+|++|+|+|+.++..... ..+...+... ..+.|++||+||+||.... ....-...+...... ..+.+||++
T Consensus        97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~  176 (201)
T 2hup_A           97 SYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKD  176 (201)
T ss_dssp             HHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTT
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCC
Confidence            46788999999999987643211 1222223322 2578999999999997531 111112223333444 678899999


Q ss_pred             CCChHHHHHHHHHHHh
Q 018454          284 SFGKGSLLSVLRQFAR  299 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~  299 (355)
                      +.|+++|++.|.+.+.
T Consensus       177 g~gi~~l~~~l~~~i~  192 (201)
T 2hup_A          177 SSNVEEAFLRVATELI  192 (201)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999877664

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.34  E-value=2.5e-07  Score=93.87  Aligned_cols=48  Identities=21%  Similarity=0.234  Sum_probs=25.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY  351 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~  351 (355)
                      +.+++|+++|.||||||||+|+|.+.....++++||+|++.+...+.+
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~  278 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH  278 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE
Confidence            457889999999999999999999998889999999998876554443

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.34  E-value=9.3e-07  Score=76.85  Aligned_cols=94  Identities=14%  Similarity=0.130  Sum_probs=62.5

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ....+..+|++|+|+|+.++.... ...+...+... ..+.|+++|+||+||.... ........+.......+|.+|++
T Consensus        89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (191)
T 3dz8_A           89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAK  168 (191)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred             HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECC
Confidence            445678999999999998764321 12233333321 2478999999999996532 12222333333344567889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.+.
T Consensus       169 ~~~gi~~l~~~l~~~i~  185 (191)
T 3dz8_A          169 ENISVRQAFERLVDAIC  185 (191)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999998876654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.34  E-value=1.3e-06  Score=88.63  Aligned_cols=93  Identities=11%  Similarity=0.058  Sum_probs=63.4

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      +.....+..+|+||+|+|+.++...... ....++.. ..++|+|+|+||+||.+......  +.+.......++.+||+
T Consensus       304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAk  380 (476)
T 3gee_A          304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISAL  380 (476)
T ss_dssp             ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTT
T ss_pred             HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEEC
Confidence            3456688999999999999988754211 22233332 24799999999999987654321  22333211346788999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.+.
T Consensus       381 tg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          381 NGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TTBSHHHHHHHHTHHHH
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988775

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.34  E-value=4.1e-07  Score=80.46  Aligned_cols=89  Identities=17%  Similarity=0.130  Sum_probs=59.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH-------------HHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------------LRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w-------------~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++......  .+...+.....+.|+++|+||+||.+.......             ...+.....
T Consensus        98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  177 (204)
T 4gzl_A           98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  177 (204)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence            57889999999999986533221  233344443358999999999999764321111             112222233


Q ss_pred             -ceEEEeeecCCCChHHHHHHHHHH
Q 018454          274 -SLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       274 -~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                       ..++.+||+++.|+++|++.|.+.
T Consensus       178 ~~~~~~~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          178 AVKYLECSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence             347889999999999999988653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.33  E-value=4.7e-07  Score=86.12  Aligned_cols=92  Identities=16%  Similarity=0.171  Sum_probs=69.1

Q ss_pred             HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC-hhhHHHHHHHHhhhCCc-eEEEeeec
Q 018454          205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP-AWATKGWLRVLSKEYPS-LAFHASIN  282 (355)
Q Consensus       205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~~~p~-~~f~vSa~  282 (355)
                      .+...+..+|++++|+|+.+ .......+.+.+..  .+.|+|+|+||+|+.. ......+...+...++. .++.+|++
T Consensus        81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~  157 (301)
T 1ega_A           81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  157 (301)
T ss_dssp             CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence            34567889999999999987 54444445554542  4799999999999987 45455566666655443 57889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.++
T Consensus       158 ~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          158 TGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTTTHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHhCC
Confidence            99999999999987654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.33  E-value=4.2e-07  Score=80.22  Aligned_cols=92  Identities=12%  Similarity=0.058  Sum_probs=61.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhh---------HHHHHHHHhhhCC-ceE
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWA---------TKGWLRVLSKEYP-SLA  276 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~---------~~~w~~~l~~~~p-~~~  276 (355)
                      .+..+|++|+|+|+.++.....  ..+...+....++.|+++|+||+||.....         .......+..... ...
T Consensus        77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  156 (212)
T 2j0v_A           77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY  156 (212)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence            5788999999999988653221  123333433335799999999999975432         1222223333333 357


Q ss_pred             EEeeecCCCChHHHHHHHHHHHhh
Q 018454          277 FHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       277 f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      |.+||+++.|++++++.|.+.+..
T Consensus       157 ~~~Sa~~g~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          157 IECSSKTQQNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEccCCCCCCHHHHHHHHHHHHhh
Confidence            889999999999999988776643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.33  E-value=9.4e-07  Score=76.82  Aligned_cols=91  Identities=10%  Similarity=0.031  Sum_probs=59.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||.... ........+.......++.+||+++.
T Consensus        90 ~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  169 (191)
T 2a5j_A           90 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTAC  169 (191)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            5678999999999987642211 122222322 12478999999999996532 11222233333344567889999999


Q ss_pred             ChHHHHHHHHHHHh
Q 018454          286 GKGSLLSVLRQFAR  299 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~  299 (355)
                      |++++++.|.+.+.
T Consensus       170 gi~~l~~~l~~~i~  183 (191)
T 2a5j_A          170 NVEEAFINTAKEIY  183 (191)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999998866543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.32  E-value=7.8e-07  Score=77.04  Aligned_cols=89  Identities=16%  Similarity=0.142  Sum_probs=60.5

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFH  278 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~  278 (355)
                      ..+..+|++|+|+|+.++...  ..+..++..     ...+.|+++|+||+||..........+.+..    ......+.
T Consensus        79 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (181)
T 1fzq_A           79 SYFENTDILIYVIDSADRKRF--EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS  156 (181)
T ss_dssp             HHHTTCSEEEEEEETTCGGGH--HHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEE
Confidence            466889999999999886432  222233322     1257899999999999765333333333321    12345778


Q ss_pred             eeecCCCChHHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      +||+++.|++++++.|.+.+
T Consensus       157 ~Sa~~g~gi~~l~~~l~~~~  176 (181)
T 1fzq_A          157 CSALTGEGVQDGMNWVCKNV  176 (181)
T ss_dssp             CCTTTCTTHHHHHHHHHHTC
T ss_pred             ccCCCCCCHHHHHHHHHHHH
Confidence            99999999999999987654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.32  E-value=2e-06  Score=79.49  Aligned_cols=88  Identities=13%  Similarity=0.040  Sum_probs=58.0

Q ss_pred             hcCCCEEEEEecCCCCC-CCcchHHHHHHH---h--hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454          210 IDSSDVVVQVLDARDPQ-GTRCHHLERHLK---E--HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       210 i~~sDvVL~VvDardp~-~s~~~~l~~~L~---~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      +..+|++|+|+|+.++. .+. ..+..++.   .  ...+.|+|+|+||+||.....................+.+||++
T Consensus       160 ~~~ad~vilV~D~t~~~~~s~-~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~  238 (255)
T 3c5h_A          160 KLLVDGFLLGIDVSRGMNRNF-DDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARS  238 (255)
T ss_dssp             EEECCEEEEEEECBC----CH-HHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTT
T ss_pred             cccCCEEEEEEECCCCchhhH-HHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCC
Confidence            34799999999999871 222 23333332   1  12578999999999997654443333333222345577899999


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      +.|+++|++.|.+.+
T Consensus       239 g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          239 NVNVDLAFSTLVQLI  253 (255)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999887654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.32  E-value=7.9e-07  Score=79.20  Aligned_cols=91  Identities=12%  Similarity=0.101  Sum_probs=59.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH-------------HHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------------LRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w-------------~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++......  .+...+.....+.|+|+|+||+||.+.......             ...+.....
T Consensus       102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  181 (214)
T 2j1l_A          102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG  181 (214)
T ss_dssp             ---CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC
Confidence            56789999999999876432111  233333333357899999999999865322111             122333334


Q ss_pred             c-eEEEeeecCCCChHHHHHHHHHHHh
Q 018454          274 S-LAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      . ..+.+||+++.|+++|++.|.+.+.
T Consensus       182 ~~~~~~~SA~~g~gi~el~~~l~~~~~  208 (214)
T 2j1l_A          182 AVAYLECSARLHDNVHAVFQEAAEVAL  208 (214)
T ss_dssp             CSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            3 6788999999999999998876653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.32  E-value=7.3e-07  Score=77.83  Aligned_cols=92  Identities=13%  Similarity=0.078  Sum_probs=61.1

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhC-CceEEEeeec
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEY-PSLAFHASIN  282 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~-p~~~f~vSa~  282 (355)
                      ...+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||..... .......+.... ....+.+||+
T Consensus        93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  172 (192)
T 2il1_A           93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAK  172 (192)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCC
Confidence            345678999999999988653222 1222333322 24789999999999975321 222233343332 4567889999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      ++.|+++|++.|.+.+
T Consensus       173 ~g~gi~~l~~~l~~~i  188 (192)
T 2il1_A          173 DNFNVDEIFLKLVDDI  188 (192)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999887654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.32  E-value=1.1e-06  Score=77.19  Aligned_cols=90  Identities=14%  Similarity=0.113  Sum_probs=61.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .+..+|++|+|+|+.++...  ..+..++   .. ...+.|+++|+||+||.... ........+.......++.+||++
T Consensus        77 ~~~~~d~vilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (206)
T 2bcg_Y           77 YYRGSHGIIIVYDVTDQESF--NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD  154 (206)
T ss_dssp             GGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTT
T ss_pred             hccCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            57889999999999886432  2232333   22 12468999999999997632 122223333333445678899999


Q ss_pred             CCChHHHHHHHHHHHhh
Q 018454          284 SFGKGSLLSVLRQFARL  300 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~~  300 (355)
                      +.|+++|++.|.+.+..
T Consensus       155 g~gi~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          155 STNVEDAFLTMARQIKE  171 (206)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999998776653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.31  E-value=8.1e-07  Score=78.49  Aligned_cols=90  Identities=17%  Similarity=0.214  Sum_probs=60.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHH-------------HHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLR-------------VLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~-------------~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++.....  ..+...+....++.|+++|+||+||.+......+..             .+.....
T Consensus        93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  172 (207)
T 2fv8_A           93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ  172 (207)
T ss_dssp             GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence            5788999999999987642211  223344443335899999999999976532222211             1112222


Q ss_pred             c-eEEEeeecCCCChHHHHHHHHHHH
Q 018454          274 S-LAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      . .++.+||+++.|+++|++.|.+.+
T Consensus       173 ~~~~~~~SA~~g~gi~el~~~l~~~i  198 (207)
T 2fv8_A          173 AYDYLECSAKTKEGVREVFETATRAA  198 (207)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            2 577899999999999999987765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.31  E-value=9.6e-07  Score=76.95  Aligned_cols=89  Identities=18%  Similarity=0.183  Sum_probs=60.5

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|++|+|+|+.++...  ..+..++.   .. ..+.|+++|+||+||.+.. ....-...+.......++.+||+
T Consensus        91 ~~~~~~d~iilV~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  168 (192)
T 2fg5_A           91 MYYRGSAAAVIVYDITKQDSF--YTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAK  168 (192)
T ss_dssp             HHHTTCSEEEEEEETTCTHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTT
T ss_pred             HhhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            356789999999999886432  22333332   21 2478999999999997522 11222233333445667889999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      ++.|+++|++.|.+.+
T Consensus       169 ~~~gi~~l~~~l~~~i  184 (192)
T 2fg5_A          169 NAINIEELFQGISRQI  184 (192)
T ss_dssp             TTBSHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999999987655

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.31  E-value=8.1e-07  Score=75.80  Aligned_cols=91  Identities=11%  Similarity=0.071  Sum_probs=59.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc--CCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC--KHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~--~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|++|+|+|+.++..... ..+...+....  .+.|+++|+||+||.+...  ...... +...+...++.+|++
T Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~  163 (187)
T 2a9k_A           85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RAEQWNVNYVETSAK  163 (187)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHH-HHHHTTCEEEECCTT
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-HHHHcCCeEEEeCCC
Confidence            35678999999999987643111 11212222221  3789999999999975321  122222 223345567889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.+.
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (187)
T 2a9k_A          164 TRANVDKVFFDLMREIR  180 (187)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999998876653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.31  E-value=7.2e-07  Score=74.49  Aligned_cols=90  Identities=10%  Similarity=0.050  Sum_probs=58.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|.+|+|+|+.++..... ..+...+...  ..+.|+++|+||+|+.....  .+.... +.......++.+|++
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~  149 (168)
T 1u8z_A           71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RADQWNVNYVETSAK  149 (168)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-HHHHHTCEEEECCTT
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH-HHHHcCCeEEEeCCC
Confidence            35678999999999987643211 1122222221  13789999999999975321  122222 222234567889999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      ++.|++++++.|.+..
T Consensus       150 ~~~gi~~l~~~l~~~i  165 (168)
T 1u8z_A          150 TRANVDKVFFDLMREI  165 (168)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.31  E-value=8.4e-07  Score=74.67  Aligned_cols=88  Identities=15%  Similarity=0.137  Sum_probs=59.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .+..+|++|+|+|+.++...  ..+..++   .. ...+.|+++|+||+||.+.. ........+........+.+||++
T Consensus        75 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (170)
T 1z08_A           75 YYRDSNGAILVYDITDEDSF--QKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQ  152 (170)
T ss_dssp             SSTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred             HhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCC
Confidence            56789999999999876421  2233332   22 12468999999999997532 111222333333445678899999


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      +.|+++|++.|.+.+
T Consensus       153 ~~gi~~l~~~l~~~~  167 (170)
T 1z08_A          153 NKGIEELFLDLCKRM  167 (170)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999987654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.31  E-value=1.7e-06  Score=73.46  Aligned_cols=92  Identities=15%  Similarity=0.104  Sum_probs=59.4

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-----cCCCcEEEEEeccCCCChh--hHHHHHHHHhh-hCCceEE
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-----CKHKHMILLLNKCDLVPAW--ATKGWLRVLSK-EYPSLAF  277 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-----~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~-~~p~~~f  277 (355)
                      ...+..+|++|+|+|+.++..... ..+...+...     ..+.|+++|+||+||.+..  ........+.. .....++
T Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~  155 (182)
T 1ky3_A           76 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLF  155 (182)
T ss_dssp             -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEE
T ss_pred             HHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEE
Confidence            346788999999999988643211 1122222221     1578999999999996432  11222223333 3345678


Q ss_pred             EeeecCCCChHHHHHHHHHHH
Q 018454          278 HASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      .+|++++.|+++|++.|.+.+
T Consensus       156 ~~Sa~~~~gi~~l~~~l~~~~  176 (182)
T 1ky3_A          156 LTSAKNAINVDTAFEEIARSA  176 (182)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHH
Confidence            899999999999999887654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.30  E-value=1.1e-06  Score=76.25  Aligned_cols=89  Identities=18%  Similarity=0.083  Sum_probs=60.0

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|++|+|+|+.++...  ..+..++   .. ...+.|+++|+||+||.... ........+.......++.+||+
T Consensus        93 ~~~~~~d~vi~v~D~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  170 (193)
T 2oil_A           93 AYYRGAVGALLVFDLTKHQTY--AVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSAL  170 (193)
T ss_dssp             HHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            356789999999999886432  1222333   22 12468999999999997532 11222333333345567889999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      ++.|+++|++.|.+.+
T Consensus       171 ~~~gi~~l~~~l~~~i  186 (193)
T 2oil_A          171 DSTNVELAFETVLKEI  186 (193)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999887654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.30  E-value=1e-06  Score=74.59  Aligned_cols=90  Identities=19%  Similarity=0.170  Sum_probs=58.4

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeeecC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      ..+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||.....  ...... +.......++.+|+++
T Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~  160 (179)
T 2y8e_A           82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER-KAKELNVMFIETSAKA  160 (179)
T ss_dssp             HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHH-HHHHHTCEEEEEBTTT
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHH-HHHHcCCeEEEEeCCC
Confidence            35678999999999987643211 112222222 224789999999999975322  122222 2222345678899999


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      +.|+++|++.|.+.+
T Consensus       161 ~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          161 GYNVKQLFRRVAAAL  175 (179)
T ss_dssp             TBSHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999987654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.29  E-value=8.5e-07  Score=75.27  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=60.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH----Hh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL----KE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L----~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|++|+|+|+.++...  ..+..++    .. ...+.|+++|+||+||.+.. ........+.......++.+|++
T Consensus        77 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  154 (181)
T 2fn4_A           77 YMRAGHGFLLVFAINDRQSF--NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAK  154 (181)
T ss_dssp             HHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred             HHhhCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCC
Confidence            45679999999999876422  1222222    21 12578999999999997632 21222333434445567889999


Q ss_pred             CCCChHHHHHHHHHHHhh
Q 018454          283 KSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ++.|+++|++.|.+.+..
T Consensus       155 ~~~gv~~l~~~l~~~~~~  172 (181)
T 2fn4_A          155 LRLNVDEAFEQLVRAVRK  172 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999998776643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.29  E-value=1.1e-06  Score=76.21  Aligned_cols=92  Identities=18%  Similarity=0.158  Sum_probs=59.5

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ...+..+|++|+|+|+.++..... ..+...+...  ..+.|+++|+||+|+.... ........+...+...++.+|++
T Consensus        88 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  167 (189)
T 1z06_A           88 QHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK  167 (189)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSS
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCC
Confidence            345788999999999987643211 1222222221  3578999999999996542 22333344444455567889999


Q ss_pred             CC---CChHHHHHHHHHHH
Q 018454          283 KS---FGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~---~Gi~~Ll~~L~q~~  298 (355)
                      ++   .|++++++.|.+.+
T Consensus       168 ~~~~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          168 NPNDNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             SGGGGSCHHHHHHHHC---
T ss_pred             cCCcccCHHHHHHHHHHHH
Confidence            99   99999988876543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.29  E-value=8e-07  Score=78.34  Aligned_cols=86  Identities=19%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh------------
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE------------  271 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~------------  271 (355)
                      .+..+|++|+|+|+.++...  ..+..++..     ...+.|+++|+||+||......++..+.+...            
T Consensus        89 ~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (198)
T 1f6b_A           89 YLPAINGIVFLVDCADHERL--LESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLK  166 (198)
T ss_dssp             GGGGCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred             HHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccc
Confidence            56789999999999886422  223333322     12578999999999997522222333333211            


Q ss_pred             ----CCceEEEeeecCCCChHHHHHHHHH
Q 018454          272 ----YPSLAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       272 ----~p~~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                          ....++.+||+++.|++++++.|.+
T Consensus       167 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  195 (198)
T 1f6b_A          167 ELNARPLEVFMCSVLKRQGYGEGFRWMAQ  195 (198)
T ss_dssp             TCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             cccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence                2345788999999999999998864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.29  E-value=6.8e-07  Score=78.13  Aligned_cols=86  Identities=22%  Similarity=0.182  Sum_probs=58.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-----------C
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-----------Y  272 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-----------~  272 (355)
                      .+..+|++|+|+|+.++...  ..+..++..     ...+.|+++|+||+||......++..+.+...           .
T Consensus        87 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (190)
T 1m2o_B           87 YFPEVNGIVFLVDAADPERF--DEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQR  164 (190)
T ss_dssp             GCTTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSC
T ss_pred             HHhcCCEEEEEEECCChHHH--HHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccc
Confidence            56789999999999987532  222222221     12578999999999997632233344443321           2


Q ss_pred             CceEEEeeecCCCChHHHHHHHHH
Q 018454          273 PSLAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       273 p~~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      ....+.+||+++.|++++++.|.+
T Consensus       165 ~~~~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          165 PVEVFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             eEEEEEeECCcCCCHHHHHHHHHh
Confidence            345788999999999999998864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.29  E-value=6.3e-07  Score=75.31  Aligned_cols=90  Identities=16%  Similarity=0.209  Sum_probs=59.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh---cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH---CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .+..+|++|+|+|+.++.... ...+...+...   ..+.|+++|+||+||.+... .......+.......++.+|+++
T Consensus        71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  150 (172)
T 2erx_A           71 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKL  150 (172)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCC
Confidence            456799999999998764321 12222333321   14789999999999975422 12222333333445678899999


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      +.|+++|++.|.+..
T Consensus       151 ~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          151 NHNVKELFQELLNLE  165 (172)
T ss_dssp             TBSHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999988765

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.29  E-value=1.4e-07  Score=95.87  Aligned_cols=46  Identities=22%  Similarity=0.279  Sum_probs=39.5

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF  350 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~  350 (355)
                      .+++|++||.||||||||||+|.+.....++++||||++.+...+.
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~  287 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIV  287 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEE
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEe
Confidence            4589999999999999999999999888999999999765544443

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.28  E-value=7e-07  Score=78.27  Aligned_cols=92  Identities=13%  Similarity=0.080  Sum_probs=58.9

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCCh-------hhHHHHHHHHhhhCCceEE
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPA-------WATKGWLRVLSKEYPSLAF  277 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~-------~~~~~w~~~l~~~~p~~~f  277 (355)
                      ...+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||...       .........+.......++
T Consensus        95 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  174 (199)
T 2p5s_A           95 KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC  174 (199)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred             HHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEE
Confidence            345678999999999987643221 1222223321 247899999999999632       1112233333333445678


Q ss_pred             EeeecCCCChHHHHHHHHHHH
Q 018454          278 HASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      .+||+++.|++++++.|.+.+
T Consensus       175 ~~SA~~g~gv~el~~~l~~~i  195 (199)
T 2p5s_A          175 ETSAKDGSNIVEAVLHLAREV  195 (199)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EeeCCCCCCHHHHHHHHHHHH
Confidence            899999999999999887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.27  E-value=1.2e-06  Score=76.28  Aligned_cols=91  Identities=13%  Similarity=0.070  Sum_probs=58.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCC---hhhHHHHHHHHhhhCC-ceEEEeee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVP---AWATKGWLRVLSKEYP-SLAFHASI  281 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp---~~~~~~w~~~l~~~~p-~~~f~vSa  281 (355)
                      .+..+|++|+|+|+.++..... ..+...+...  ..+.|+++|+||+||..   ..........+...+. ...+.+||
T Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  161 (184)
T 3ihw_A           82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA  161 (184)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred             eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC
Confidence            4567999999999998653221 2222333321  14689999999999942   1111222223333333 56788999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +++.|++++++.|.+.+.
T Consensus       162 ~~~~gv~~lf~~l~~~i~  179 (184)
T 3ihw_A          162 TYGLNVERVFQDVAQKVV  179 (184)
T ss_dssp             TTTBTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999998876543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.26  E-value=8.2e-07  Score=75.61  Aligned_cols=84  Identities=25%  Similarity=0.243  Sum_probs=54.8

Q ss_pred             cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454          211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL  290 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L  290 (355)
                      ..+|++++|+|+.++.  ....+...+.+  .+.|+|+|+||+|+..........+.+...+....+.+||+++.|+++|
T Consensus        80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l  155 (165)
T 2wji_A           80 EKPDLVVNIVDATALE--RNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL  155 (165)
T ss_dssp             HCCSEEEEEEETTCHH--HHHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred             CCCCEEEEEecCCchh--HhHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHH
Confidence            4799999999998642  11222223332  4799999999999864321111112232223345678999999999999


Q ss_pred             HHHHHHHH
Q 018454          291 LSVLRQFA  298 (355)
Q Consensus       291 l~~L~q~~  298 (355)
                      ++.|.+.+
T Consensus       156 ~~~l~~~~  163 (165)
T 2wji_A          156 KKAISIAV  163 (165)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99887654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.25  E-value=4.5e-06  Score=82.44  Aligned_cols=103  Identities=15%  Similarity=0.133  Sum_probs=68.6

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh----HHHHHHHHhh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRVLSK  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~  270 (355)
                      +|| .++.......+..+|++|+|+|+.++. .....+....+.. ....|+|+|+||+|+++...    .+++.+++..
T Consensus        91 PGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  168 (410)
T 1kk1_A           91 PGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQKNIIIAQNKIELVDKEKALENYRQIKEFIEG  168 (410)
T ss_dssp             SSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCh-HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence            455 345566677888999999999999864 2212222222222 23468999999999987542    2333344433


Q ss_pred             h--CCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          271 E--YPSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       271 ~--~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      .  ....++.+|++++.|+++|++.|.+.++.
T Consensus       169 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          169 TVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            1  23457889999999999999999887653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.23  E-value=8.3e-07  Score=74.01  Aligned_cols=90  Identities=16%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|.+++|+|+.++..... ..+...+..  ...+.|+++|+||+|+.+... .......+.......++.+|++++
T Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  150 (167)
T 1kao_A           71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSK  150 (167)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCH
T ss_pred             HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCC
Confidence            5678899999999987643211 111122222  124789999999999975322 122223333333445788899999


Q ss_pred             CChHHHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQFA  298 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~  298 (355)
                      .|+++|++.|.+.+
T Consensus       151 ~gi~~l~~~l~~~~  164 (167)
T 1kao_A          151 TMVDELFAEIVRQM  164 (167)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999999987665

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.22  E-value=4.6e-07  Score=84.31  Aligned_cols=83  Identities=20%  Similarity=0.146  Sum_probs=60.4

Q ss_pred             cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454          211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL  290 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L  290 (355)
                      ..+|+||+|+|+.++  .....+..++.+  .+.|+++|+||+|+............+.......++.+||+++.|+++|
T Consensus        82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el  157 (256)
T 3iby_A           82 LEYDCIINVIDACHL--ERHLYLTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPAL  157 (256)
T ss_dssp             SCCSEEEEEEEGGGH--HHHHHHHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHH
T ss_pred             CCCCEEEEEeeCCCc--hhHHHHHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence            889999999999874  223344444443  4799999999999976543222233344444566888999999999999


Q ss_pred             HHHHHHH
Q 018454          291 LSVLRQF  297 (355)
Q Consensus       291 l~~L~q~  297 (355)
                      ++.|.+.
T Consensus       158 ~~~i~~~  164 (256)
T 3iby_A          158 QQSLLHC  164 (256)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhh
Confidence            9998765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.22  E-value=1.7e-06  Score=73.78  Aligned_cols=88  Identities=11%  Similarity=0.104  Sum_probs=56.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHH---HHHhh----cCCCcEEEEEeccCCCC---hhhHHHHHHHHhhh-CCceEE
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLER---HLKEH----CKHKHMILLLNKCDLVP---AWATKGWLRVLSKE-YPSLAF  277 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~---~L~~~----~~~k~vILVlNK~DLvp---~~~~~~w~~~l~~~-~p~~~f  277 (355)
                      .+..+|++|+|+|+.++...  ..+..   ++...    ..+.|+++|+||+||..   ......-...+... .....|
T Consensus        69 ~~~~~d~~ilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~  146 (178)
T 2iwr_A           69 FSGWADAVIFVFSLEDENSF--QAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYY  146 (178)
T ss_dssp             HHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEE
T ss_pred             HHHhCCEEEEEEECcCHHHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEE
Confidence            45679999999999987532  22333   33321    14789999999999942   11111111222222 235577


Q ss_pred             EeeecCCCChHHHHHHHHHHH
Q 018454          278 HASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      .+||+++.|++++++.|.+.+
T Consensus       147 ~~Sa~~~~~i~~lf~~l~~~~  167 (178)
T 2iwr_A          147 ETXATYGLNVDRVFQEVAQKV  167 (178)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHH
T ss_pred             EEeccccCCHHHHHHHHHHHH
Confidence            899999999999999887654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.22  E-value=1.4e-06  Score=77.88  Aligned_cols=91  Identities=16%  Similarity=0.058  Sum_probs=58.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .+..+|++|+|+|+.++...  ..+..++   ... ..+.|++||+||+||.... ........+.......++.+||++
T Consensus        82 ~~~~~d~vilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  159 (223)
T 3cpj_B           82 YYRGAVGALIVYDISKSSSY--ENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALN  159 (223)
T ss_dssp             GTTTCCEEEEEEC-CCHHHH--HHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-
T ss_pred             HhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence            57789999999999886432  2232333   221 2478999999999997532 111222333333455677899999


Q ss_pred             CCChHHHHHHHHHHHhhh
Q 018454          284 SFGKGSLLSVLRQFARLK  301 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~~~  301 (355)
                      +.|+++|++.|.+.+...
T Consensus       160 ~~gi~~l~~~l~~~i~~~  177 (223)
T 3cpj_B          160 SENVDKAFEELINTIYQK  177 (223)
T ss_dssp             CCCHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999988776543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.21  E-value=1.8e-06  Score=75.33  Aligned_cols=92  Identities=21%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      ..+..+|++|+|+|+.++..... ..+...+..  ...+.|+++|+||+||.... ........+...+....|.+||++
T Consensus        94 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  173 (196)
T 2atv_A           94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACT  173 (196)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTT
T ss_pred             hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCc
Confidence            35677899999999988643211 122222322  12578999999999997532 112222233333345678899999


Q ss_pred             CC-ChHHHHHHHHHHHh
Q 018454          284 SF-GKGSLLSVLRQFAR  299 (355)
Q Consensus       284 ~~-Gi~~Ll~~L~q~~~  299 (355)
                      +. |++++++.|.+.+.
T Consensus       174 g~~gi~~l~~~l~~~i~  190 (196)
T 2atv_A          174 GEGNITEIFYELCREVR  190 (196)
T ss_dssp             CTTCHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99 99999998876553

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.21  E-value=3.4e-07  Score=85.77  Aligned_cols=90  Identities=19%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+.....+|++|+|+|+.++.  ....+...+.+  .+.|+|+|+||+|+..........+.+.+.....++.+||++|.
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~--~~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~  154 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLE--RNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGR  154 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHH--HHHHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGH
T ss_pred             HHHhhcCCCEEEEEecCCChH--HHHHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            344568999999999998742  23334444444  47999999999998754322222233444444567889999999


Q ss_pred             ChHHHHHHHHHHHh
Q 018454          286 GKGSLLSVLRQFAR  299 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~  299 (355)
                      |+++|++.|.+.+.
T Consensus       155 gi~el~~~i~~~~~  168 (274)
T 3i8s_A          155 GIEALKLAIDRYKA  168 (274)
T ss_dssp             HHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999876653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.21  E-value=2e-06  Score=74.92  Aligned_cols=91  Identities=11%  Similarity=0.069  Sum_probs=58.8

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|++|+|+|+.++..... ..+...+...  ..+.|+++|+||+||.+...  ...... +...+...+|.+||+
T Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~  159 (206)
T 2bov_A           81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RAEQWNVNYVETSAK  159 (206)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHHHTCEEEEECTT
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH-HHHHhCCeEEEEeCC
Confidence            35677999999999987642111 1122222222  23789999999999975321  122222 222234567889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.+.
T Consensus       160 ~g~gi~~l~~~l~~~i~  176 (206)
T 2bov_A          160 TRANVDKVFFDLMREIR  176 (206)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999998876654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.21  E-value=4.4e-06  Score=82.53  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=61.6

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh----HHHHHHHHhh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRVLSK  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~  270 (355)
                      +|| .++.......+..+|++|+|+|+.++. .....+....+.. ...+|+|+|+||+||++...    .++..+.+..
T Consensus        89 PGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~  166 (408)
T 1s0u_A           89 PGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG  166 (408)
T ss_dssp             SSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT
T ss_pred             CCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh
Confidence            455 344556667788899999999999864 2111111122222 23458999999999987432    2333444433


Q ss_pred             h--CCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          271 E--YPSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       271 ~--~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      .  ....++.+||+++.|+++|++.|.+.++.
T Consensus       167 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          167 TIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             STTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            1  13457889999999999999999886653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.20  E-value=1.9e-06  Score=76.53  Aligned_cols=94  Identities=16%  Similarity=0.117  Sum_probs=60.7

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ....+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||..... ...-...+.......+|.+||+
T Consensus        92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  171 (201)
T 2ew1_A           92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK  171 (201)
T ss_dssp             HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            3456789999999999987643211 1222223221 24688999999999974321 1111222323334557889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|+++|++.|.+.+.
T Consensus       172 ~g~gv~~l~~~l~~~i~  188 (201)
T 2ew1_A          172 ESDNVEKLFLDLACRLI  188 (201)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999998876654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.19  E-value=3.2e-06  Score=81.33  Aligned_cols=92  Identities=17%  Similarity=0.111  Sum_probs=63.4

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEe
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHA  279 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~v  279 (355)
                      ...+..+|++|+|+|+.++.....  ..+...+.. ...+.|+|||+||+||........+...+....    ...+|.+
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~v  306 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT  306 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEEC
T ss_pred             HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEE
Confidence            345778999999999988654211  122222222 124789999999999987544445555544322    3457789


Q ss_pred             eecCCCChHHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~  298 (355)
                      ||+++.|+++|++.|.+.+
T Consensus       307 SAk~g~gi~el~~~l~~~l  325 (329)
T 3o47_A          307 CATSGDGLYEGLDWLSNQL  325 (329)
T ss_dssp             BTTTTBTHHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHHHH
Confidence            9999999999999987765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.18  E-value=1.1e-06  Score=78.38  Aligned_cols=90  Identities=11%  Similarity=0.097  Sum_probs=60.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK  287 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi  287 (355)
                      .+..+|++|+|+|+.++..... ..+...+.....+.|+++|+||+||........... +........|.+|++++.|+
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi  162 (221)
T 3gj0_A           84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNF  162 (221)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCC-HHHHHTCEEEECBGGGTBTT
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHH-HHHHcCCEEEEEeCCCCCCH
Confidence            5668999999999998643211 122233333335789999999999976433221111 11222356788999999999


Q ss_pred             HHHHHHHHHHHh
Q 018454          288 GSLLSVLRQFAR  299 (355)
Q Consensus       288 ~~Ll~~L~q~~~  299 (355)
                      ++|++.|.+.+.
T Consensus       163 ~~l~~~l~~~l~  174 (221)
T 3gj0_A          163 EKPFLWLARKLI  174 (221)
T ss_dssp             THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887664

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.18  E-value=9.1e-06  Score=78.78  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=62.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch---HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH---HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~---~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      ....+|.+|+|+|+.++.+....   .+...+.....++|+|+|+||+|+............+.. ....++.+||++|.
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~iSA~~g~  321 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKE-KGLNPIKISALKGT  321 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHH-TTCCCEECBTTTTB
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHh-cCCCeEEEeCCCCc
Confidence            34569999999999876532222   233333332237999999999999886544444443332 33446788999999


Q ss_pred             ChHHHHHHHHHHHh
Q 018454          286 GKGSLLSVLRQFAR  299 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~  299 (355)
                      |+++|++.|.+.+.
T Consensus       322 gi~~l~~~i~~~l~  335 (357)
T 2e87_A          322 GIDLVKEEIIKTLR  335 (357)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999887764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.17  E-value=3.5e-06  Score=74.02  Aligned_cols=89  Identities=15%  Similarity=0.034  Sum_probs=59.9

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ..+..+|++|+|+|+.++...  ..+..++   .. ...+.|+++|+||+||.....  .... ..+........+.+||
T Consensus        93 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~~~~~~~~SA  169 (200)
T 2o52_A           93 SYYRGAAGALLVYDITSRETY--NSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SRFAQENELMFLETSA  169 (200)
T ss_dssp             HHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHTTCEEEEECT
T ss_pred             HHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHH-HHHHHHcCCEEEEEeC
Confidence            357889999999999886432  2223333   22 224789999999999965321  1222 2223334556788999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +++.|++++++.|.+.+.
T Consensus       170 ~~g~gi~~l~~~l~~~i~  187 (200)
T 2o52_A          170 LTGENVEEAFLKCARTIL  187 (200)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999998876553

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.17  E-value=1.5e-06  Score=86.98  Aligned_cols=91  Identities=14%  Similarity=0.147  Sum_probs=67.2

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      +.+...+..+|++|+|+|+  ........+...+.+  .+.|+|+|+||+|+...... ...+.+...+...++.+||++
T Consensus       105 ~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAkt  179 (423)
T 3qq5_A          105 EKARRVFYRADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQ  179 (423)
T ss_dssp             HHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCC
T ss_pred             HHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCC
Confidence            3455678899999999999  233334445555554  47999999999999865433 344555555555677889999


Q ss_pred             CCChHHHHHHHHHHHh
Q 018454          284 SFGKGSLLSVLRQFAR  299 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~  299 (355)
                      +.|+++|++.|.+.++
T Consensus       180 g~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          180 KKGFDDIGKTISEILP  195 (423)
T ss_dssp             TTSTTTHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999998874

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.16  E-value=1.1e-06  Score=76.03  Aligned_cols=90  Identities=17%  Similarity=0.183  Sum_probs=58.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChh-------------hHHHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAW-------------ATKGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~-------------~~~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++.....  ..+...+....++.|+++|+||+||.+..             ....-...+...+.
T Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  154 (184)
T 1m7b_A           75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG  154 (184)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred             hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC
Confidence            5678999999999988643221  12233343333578999999999997421             11111122222222


Q ss_pred             -ceEEEeeec-CCCChHHHHHHHHHHH
Q 018454          274 -SLAFHASIN-KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       274 -~~~f~vSa~-~~~Gi~~Ll~~L~q~~  298 (355)
                       ...+.+||+ ++.|+++|++.|.+.+
T Consensus       155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          155 AATYIECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence             457789998 6899999999887654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.46  E-value=2.5e-07  Score=81.39  Aligned_cols=88  Identities=17%  Similarity=0.148  Sum_probs=56.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH-------------HHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------------LRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w-------------~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++......  .+...+.....+.|+++|+||+||.+......+             ...+.....
T Consensus        98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  177 (204)
T 3th5_A           98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  177 (204)
Confidence            56789999999999887543321  233333332237899999999999764311111             111112222


Q ss_pred             c-eEEEeeecCCCChHHHHHHHHH
Q 018454          274 S-LAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       274 ~-~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      . .++.+||+++.|+++|++.|.+
T Consensus       178 ~~~~~~vSA~~g~gi~~l~~~l~~  201 (204)
T 3th5_A          178 AVKYLECSALTQRGLKTVFDEAIR  201 (204)
Confidence            2 4567899999999999988764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.16  E-value=2.3e-06  Score=79.54  Aligned_cols=85  Identities=21%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454          211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL  290 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L  290 (355)
                      ..+|+||+|+|+.++.  ....+...+.+  .+.|+++|+||+|+............+...+...++.+||+++.|+++|
T Consensus        82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el  157 (258)
T 3a1s_A           82 GDADLVILVADSVNPE--QSLYLLLEILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEEL  157 (258)
T ss_dssp             SCCSEEEEEEETTSCH--HHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHH
T ss_pred             cCCCEEEEEeCCCchh--hHHHHHHHHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHH
Confidence            6899999999998753  22233333433  4799999999999865432211233344444556788999999999999


Q ss_pred             HHHHHHHHh
Q 018454          291 LSVLRQFAR  299 (355)
Q Consensus       291 l~~L~q~~~  299 (355)
                      ++.|.+...
T Consensus       158 ~~~i~~~~~  166 (258)
T 3a1s_A          158 KEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999988764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.16  E-value=1.4e-05  Score=68.51  Aligned_cols=96  Identities=15%  Similarity=0.047  Sum_probs=60.6

Q ss_pred             HHHHHhh-hcCCCEEEEEecCCCCCCC-----------cchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHH
Q 018454          203 WGELYKV-IDSSDVVVQVLDARDPQGT-----------RCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVL  268 (355)
Q Consensus       203 ~~el~kv-i~~sDvVL~VvDardp~~s-----------~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l  268 (355)
                      +...+.. .+.+++++.|+|+..+...           .+..+...+..  .+.|+++|+||+|+....  ....+.+.+
T Consensus        72 ~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~  149 (190)
T 2cxx_A           72 IVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKF  149 (190)
T ss_dssp             HHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcHHHHHHHHHHHh
Confidence            3333444 7778899999987542110           01112233332  579999999999998743  233444444


Q ss_pred             hhhC---CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          269 SKEY---PSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       269 ~~~~---p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ...+   ...++.+||+++.|++++++.|.+.+..
T Consensus       150 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          150 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence            3211   1236889999999999999999877653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.15  E-value=4.9e-06  Score=73.39  Aligned_cols=89  Identities=19%  Similarity=0.095  Sum_probs=53.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc---hHHHHHHHh---hcCCCcEEEEEeccCCCChhhHHHHHHH----Hh---------
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC---HHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWLRV----LS---------  269 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~---~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~~~w~~~----l~---------  269 (355)
                      .+..+|++|+|+|+.++.....   ..+...+..   ...+.|+++|+||+||..........+.    +.         
T Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~  154 (214)
T 2fh5_B           75 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAA  154 (214)
T ss_dssp             HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhc
Confidence            4788999999999987321111   112222221   1246899999999999864322222222    11         


Q ss_pred             ----------h-------------hC--CceEEEeeecCC------CChHHHHHHHHHH
Q 018454          270 ----------K-------------EY--PSLAFHASINKS------FGKGSLLSVLRQF  297 (355)
Q Consensus       270 ----------~-------------~~--p~~~f~vSa~~~------~Gi~~Ll~~L~q~  297 (355)
                                +             ..  ....+.+||+++      .|++++++.|.+.
T Consensus       155 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          155 PSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                      1             01  344678999999      9999999988754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.15  E-value=4.5e-06  Score=73.35  Aligned_cols=89  Identities=17%  Similarity=0.156  Sum_probs=59.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hhhc--CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHC--KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~~--~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|++|+|+|+.++...  ..+..++   ....  .+.|+|+|+||+||.... ....-...+...+....+.+||+
T Consensus        93 ~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~  170 (195)
T 3cbq_A           93 CLQTGDAFLIVFSVTDRRSF--SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA  170 (195)
T ss_dssp             HHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred             hhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCC
Confidence            35679999999999876432  1223333   2211  478999999999997532 11112223333344567889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++.|++++++.|.+.+.
T Consensus       171 ~~~~v~~lf~~l~~~i~  187 (195)
T 3cbq_A          171 LHHNTRELFEGAVRQIR  187 (195)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999998876654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.15  E-value=3.1e-06  Score=82.26  Aligned_cols=97  Identities=20%  Similarity=0.249  Sum_probs=64.2

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCc-ch---HHHHHHHhh---cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTR-CH---HLERHLKEH---CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYP  273 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~-~~---~l~~~L~~~---~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p  273 (355)
                      +..+.++.++.+|++|+|+|+.++.+.. ..   .+...|...   ..++|+++|+||+|+..... .+.+.+.+...  
T Consensus       226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~--  303 (342)
T 1lnz_A          226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD--  303 (342)
T ss_dssp             THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC--
T ss_pred             hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC--
Confidence            3345566788899999999997642111 11   223333331   14799999999999987532 23333333211  


Q ss_pred             ceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          274 SLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ..+|.+||+++.|+++|++.|.+.+..
T Consensus       304 ~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          304 YPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             CCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence            345678999999999999999887753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.14  E-value=1.4e-06  Score=76.47  Aligned_cols=90  Identities=14%  Similarity=0.076  Sum_probs=60.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|++|+|+|+.++...  ..+..++..     ...+.|+++|+||+||.+... .......+........|.+||+
T Consensus        92 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  169 (201)
T 3oes_A           92 FIIGVHGYVLVYSVTSLHSF--QVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSAR  169 (201)
T ss_dssp             GTTTCCEEEEEEETTCHHHH--HHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred             HHhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCC
Confidence            57789999999999876422  223333322     124689999999999975432 1222233333344567889999


Q ss_pred             CCCChHHHHHHHHHHHhh
Q 018454          283 KSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ++.|++++++.|.+.+..
T Consensus       170 ~~~~v~~l~~~l~~~i~~  187 (201)
T 3oes_A          170 ENQLTQGIFTKVIQEIAR  187 (201)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999998876653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.11  E-value=1.4e-06  Score=77.39  Aligned_cols=90  Identities=17%  Similarity=0.183  Sum_probs=58.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChh-------------hHHHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAW-------------ATKGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~-------------~~~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++.....  ..+...+.....+.|+|+|+||+||.+..             ....-...+...+.
T Consensus        96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (205)
T 1gwn_A           96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG  175 (205)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence            5678999999999988643221  12333344333578999999999997421             11111222332223


Q ss_pred             -ceEEEeeec-CCCChHHHHHHHHHHH
Q 018454          274 -SLAFHASIN-KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       274 -~~~f~vSa~-~~~Gi~~Ll~~L~q~~  298 (355)
                       ...+.+||+ ++.|+++|++.|.+.+
T Consensus       176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          176 AATYIECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence             457789998 6899999999887654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.11  E-value=2.2e-06  Score=86.57  Aligned_cols=89  Identities=21%  Similarity=0.272  Sum_probs=62.9

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-CCceEEEeeec
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-YPSLAFHASIN  282 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-~p~~~f~vSa~  282 (355)
                      +.....+..+|+||+|+|+.++.......+.+.+    .++|+|+|+||+||.+.....    .+... ....++.+|++
T Consensus       295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l----~~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAk  366 (462)
T 3geh_A          295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV----KHRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAA  366 (462)
T ss_dssp             ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHH----TTSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTT
T ss_pred             HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc----cCCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECC
Confidence            4456678999999999999998765544444444    358999999999998764322    11111 12346788999


Q ss_pred             CCCChHHHHHHHHHHHhh
Q 018454          283 KSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ++.|+++|++.|.+.+..
T Consensus       367 tg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          367 QKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             TTBSHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999887753

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.11  E-value=2e-06  Score=80.85  Aligned_cols=90  Identities=17%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhH-------------HHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-------------KGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-------------~~w~~~l~~~~p  273 (355)
                      .+..+|++|+|+|+.++......  .+...+.....++|+++|+||+||.+....             ......+.....
T Consensus       223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  302 (332)
T 2wkq_A          223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  302 (332)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence            57889999999999886532221  233344433347999999999999653211             111122222233


Q ss_pred             c-eEEEeeecCCCChHHHHHHHHHHH
Q 018454          274 S-LAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      . .+|.+||+++.|+++|++.|.+.+
T Consensus       303 ~~~~~~~Sa~~~~gi~~l~~~l~~~~  328 (332)
T 2wkq_A          303 AVKYLECSALTQRGLKTVFDEAIRAV  328 (332)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            3 678899999999999999887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.09  E-value=8.1e-06  Score=83.77  Aligned_cols=52  Identities=21%  Similarity=0.331  Sum_probs=41.1

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp  257 (355)
                      ..+...+..+|.+|+|+|+.++.......+...+..  .++|+|+|+||+|+..
T Consensus        97 ~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           97 EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTTSCC
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCcc
Confidence            456678899999999999998776555555555544  5799999999999964

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.09  E-value=6.5e-06  Score=85.74  Aligned_cols=94  Identities=16%  Similarity=0.110  Sum_probs=65.8

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC---ceEEEee
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP---SLAFHAS  280 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p---~~~f~vS  280 (355)
                      .++...+..+|.+|+|+|+.++..............  .+.|+|+|+||+|+.... .....+.+...+.   ..++.+|
T Consensus        88 ~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~~~~vi~vS  164 (600)
T 2ywe_A           88 YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLDPEEAILAS  164 (600)
T ss_dssp             HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCCGGGCEECB
T ss_pred             HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccC-HHHHHHHHHHhhCCCcccEEEEE
Confidence            345567889999999999998764433222222222  579999999999997543 2233344444332   2478899


Q ss_pred             ecCCCChHHHHHHHHHHHhh
Q 018454          281 INKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      |++|.|+++|++.|.+.++.
T Consensus       165 Aktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          165 AKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             TTTTBSHHHHHHHHHHHSCC
T ss_pred             eecCCCchHHHHHHHHhccc
Confidence            99999999999999888764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.06  E-value=3.1e-06  Score=78.63  Aligned_cols=89  Identities=26%  Similarity=0.296  Sum_probs=61.5

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCC-CcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKH-KHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~-k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      +-....+|+||+|+|+.++.  ....+...+..  .+ .|+++|+||+|+.+..........+.......++.+|++++.
T Consensus        76 ~~~~~~~d~vi~v~D~~~~~--~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~  151 (271)
T 3k53_A           76 FILDGNADVIVDIVDSTCLM--RNLFLTLELFE--MEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGE  151 (271)
T ss_dssp             HHHTTCCSEEEEEEEGGGHH--HHHHHHHHHHH--TTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTB
T ss_pred             hhhccCCcEEEEEecCCcch--hhHHHHHHHHh--cCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCC
Confidence            33457899999999998752  22222222332  34 999999999998754322222344444445567889999999


Q ss_pred             ChHHHHHHHHHHHh
Q 018454          286 GKGSLLSVLRQFAR  299 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~  299 (355)
                      |+++|++.|.+...
T Consensus       152 gi~~l~~~i~~~~~  165 (271)
T 3k53_A          152 GVEELKRMIALMAE  165 (271)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.06  E-value=1.5e-05  Score=79.81  Aligned_cols=90  Identities=16%  Similarity=0.055  Sum_probs=55.3

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCC-------CcchHHHHHHHhhcCCCc-EEEEEeccCCCCh----hhHH----HH
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQG-------TRCHHLERHLKEHCKHKH-MILLLNKCDLVPA----WATK----GW  264 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~-------s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~----~~~~----~w  264 (355)
                      ++.......+..+|++|+|+|+.+...       .........+..  .+.| +|+|+||+||...    ...+    +.
T Consensus       107 ~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~  184 (439)
T 3j2k_7          107 SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTVNWSNERYEECKEKL  184 (439)
T ss_pred             HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcccchHHHHHHHHHHHH
Confidence            445556667889999999999998753       112222222222  3566 8999999999642    1111    22


Q ss_pred             HHHHhhh-C----CceEEEeeecCCCChHHHHH
Q 018454          265 LRVLSKE-Y----PSLAFHASINKSFGKGSLLS  292 (355)
Q Consensus       265 ~~~l~~~-~----p~~~f~vSa~~~~Gi~~Ll~  292 (355)
                      ...+... +    ...++.+||++|.|+.++.+
T Consensus       185 ~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          185 VPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            2222221 1    23477899999999998443

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.05  E-value=5.5e-07  Score=91.00  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=36.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWF  344 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~  344 (355)
                      +.+++|+++|.||||||||+|+|.+.....++++||+|++.
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~  262 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDV  262 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEE
Confidence            35788999999999999999999998888899999998554

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.05  E-value=5.7e-06  Score=76.57  Aligned_cols=42  Identities=26%  Similarity=0.254  Sum_probs=35.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFY  345 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y  345 (355)
                      .+.++|+++|.+|||||||||+|++.....+++.+|+|...+
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~   75 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV   75 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeE
Confidence            357899999999999999999999999888999999884433

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.03  E-value=8.7e-06  Score=73.76  Aligned_cols=90  Identities=16%  Similarity=0.111  Sum_probs=59.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|++|+|.|..++.+... ..+...+.. ...+.|+|||.||+||.... +...-...+...+....|.+||++|.
T Consensus        82 ~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~  161 (216)
T 4dkx_A           82 YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGY  161 (216)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTB
T ss_pred             HhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCc
Confidence            5678999999999988654322 122222222 23578999999999996532 12222233333444556789999999


Q ss_pred             ChHHHHHHHHHHH
Q 018454          286 GKGSLLSVLRQFA  298 (355)
Q Consensus       286 Gi~~Ll~~L~q~~  298 (355)
                      |++++++.|.+.+
T Consensus       162 nV~e~F~~i~~~i  174 (216)
T 4dkx_A          162 NVKQLFRRVAAAL  174 (216)
T ss_dssp             SHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999887654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.02  E-value=4.2e-06  Score=72.76  Aligned_cols=88  Identities=18%  Similarity=0.080  Sum_probs=57.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hhh----cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEH----CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~----~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vS  280 (355)
                      .+..+|++|+|+|+.++...  ..+..++   ...    ..+.|+|+|+||+||.... ....-...+........+.+|
T Consensus        88 ~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  165 (187)
T 3c5c_A           88 YLNWAHAFLVVYSVDSRQSF--DSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS  165 (187)
T ss_dssp             HHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred             HHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence            56789999999999876432  2222232   221    1579999999999996421 111112222223345678899


Q ss_pred             e-cCCCChHHHHHHHHHHH
Q 018454          281 I-NKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       281 a-~~~~Gi~~Ll~~L~q~~  298 (355)
                      | +++.|+++|++.|.+.+
T Consensus       166 a~~~g~gv~~lf~~l~~~i  184 (187)
T 3c5c_A          166 ACLDFEHVQHVFHEAVREA  184 (187)
T ss_dssp             SSSCSHHHHHHHHHHHHHH
T ss_pred             ecCccccHHHHHHHHHHHH
Confidence            9 89999999999887654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.02  E-value=6.5e-06  Score=71.22  Aligned_cols=90  Identities=10%  Similarity=0.030  Sum_probs=59.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhcCCCcEEEEEeccCCCChhhH----HHHHHHHhhhCCce----EE
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSKEYPSL----AF  277 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~~~p~~----~f  277 (355)
                      .+..+|++++|+|+.++..+. ..+..++.   ....+.|+++|+||+||......    ......+.......    .+
T Consensus        76 ~~~~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (184)
T 2zej_A           76 FMTQRALYLAVYDLSKGQAEV-DAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYH  154 (184)
T ss_dssp             HHHHSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEE
T ss_pred             HccCCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheE
Confidence            355689999999998864222 12333332   22357899999999999865432    22233444333332    67


Q ss_pred             EeeecCCC-ChHHHHHHHHHHHh
Q 018454          278 HASINKSF-GKGSLLSVLRQFAR  299 (355)
Q Consensus       278 ~vSa~~~~-Gi~~Ll~~L~q~~~  299 (355)
                      .+||+++. |+++|++.|.+.+.
T Consensus       155 ~~Sa~~~~~~~~~l~~~i~~~~~  177 (184)
T 2zej_A          155 FVNATEESDALAKLRKTIINESL  177 (184)
T ss_dssp             ECCTTSCCHHHHHHHHHHHHHHH
T ss_pred             EEecccCchhHHHHHHHHHHHHh
Confidence            88999997 99999998876654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.00  E-value=2.6e-06  Score=84.45  Aligned_cols=40  Identities=23%  Similarity=0.215  Sum_probs=35.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW  343 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~  343 (355)
                      ..+..|+|||.||||||||||+|.+...+.++++|++|..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~   57 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID   57 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec
Confidence            3567899999999999999999999887789999998743

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.99  E-value=7.9e-06  Score=80.54  Aligned_cols=96  Identities=13%  Similarity=0.079  Sum_probs=63.5

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCC-hhhHH----HHHHHHhhhC---
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVP-AWATK----GWLRVLSKEY---  272 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp-~~~~~----~w~~~l~~~~---  272 (355)
                      +.......+..+|++|+|+|+.++.......+...+..  .+.| +|+|+||+|+.. ....+    +..+.+....   
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  165 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  165 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence            34555667889999999999998765433334344433  4677 889999999985 22111    2222332221   


Q ss_pred             -CceEEEeeecCCCC------------------hHHHHHHHHHHHh
Q 018454          273 -PSLAFHASINKSFG------------------KGSLLSVLRQFAR  299 (355)
Q Consensus       273 -p~~~f~vSa~~~~G------------------i~~Ll~~L~q~~~  299 (355)
                       ...++.+||+++.|                  +.+|++.|.++++
T Consensus       166 ~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          166 DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence             14577889999887                  7788888887765

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.98  E-value=4.4e-06  Score=78.47  Aligned_cols=84  Identities=20%  Similarity=0.171  Sum_probs=56.8

Q ss_pred             cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454          211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL  290 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L  290 (355)
                      ..+|+||+|+|+.+..  ....+...+.+  .+.|+++|+||+|+........-...+.......++.+||+++.|+++|
T Consensus        79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el  154 (272)
T 3b1v_A           79 QRADSILNVVDATNLE--RNLYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV  154 (272)
T ss_dssp             TCCSEEEEEEEGGGHH--HHHHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred             CCCCEEEEEecCCchH--hHHHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence            5799999999998742  22233333333  5799999999999864322111122233333445788999999999999


Q ss_pred             HHHHHHHH
Q 018454          291 LSVLRQFA  298 (355)
Q Consensus       291 l~~L~q~~  298 (355)
                      ++.|.+.+
T Consensus       155 ~~~i~~~~  162 (272)
T 3b1v_A          155 VKKAAHTT  162 (272)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHHH
Confidence            99987654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.98  E-value=4.3e-06  Score=71.85  Aligned_cols=86  Identities=24%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454          211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL  290 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L  290 (355)
                      ..+|++++|+|+.+..  ....+...+..  .+.|+++|+||+|+............+...+...++.+|++++.|+++|
T Consensus        84 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  159 (188)
T 2wjg_A           84 EKPDLVVNIVDATALE--RNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL  159 (188)
T ss_dssp             HCCSEEEEEEEGGGHH--HHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred             cCCCEEEEEecchhHH--HHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHH
Confidence            4689999999987521  11222223332  5789999999999864321111122233333455788999999999999


Q ss_pred             HHHHHHHHhh
Q 018454          291 LSVLRQFARL  300 (355)
Q Consensus       291 l~~L~q~~~~  300 (355)
                      ++.|.+.+..
T Consensus       160 ~~~i~~~~~~  169 (188)
T 2wjg_A          160 KKAISIAVKD  169 (188)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999877653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.98  E-value=1.1e-05  Score=75.14  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=32.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc-----ccCCCCCeeE
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI-----LFFPASVVWY  342 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-----~vs~iPGtT~  342 (355)
                      ....|+|||.||||||||||+|.+...+     .+++.|+.++
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~   67 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQ   67 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEE
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEE
Confidence            4578999999999999999999998876     6677787553

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.97  E-value=1.1e-05  Score=72.83  Aligned_cols=91  Identities=18%  Similarity=0.158  Sum_probs=57.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ....+|.+|+|+|+.++..... ..+...+..  ...+.|+|||+||+||.... ........+...+....|.+||++|
T Consensus       108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g  187 (211)
T 2g3y_A          108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ  187 (211)
T ss_dssp             CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCC
Confidence            4567899999999887643211 122222332  12478999999999996432 1111112222233455778999999


Q ss_pred             CChHHHHHHHHHHHh
Q 018454          285 FGKGSLLSVLRQFAR  299 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~  299 (355)
                      .|+++|++.|.+.+.
T Consensus       188 ~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          188 HNVKELFEGIVRQVR  202 (211)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999998876653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.95  E-value=1.5e-05  Score=80.52  Aligned_cols=87  Identities=13%  Similarity=-0.022  Sum_probs=51.7

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCC-------cchHHHHHHHhhcCCCcEEEEEeccCCCC--hhhHHHHHH----HH
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGT-------RCHHLERHLKEHCKHKHMILLLNKCDLVP--AWATKGWLR----VL  268 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s-------~~~~l~~~L~~~~~~k~vILVlNK~DLvp--~~~~~~w~~----~l  268 (355)
                      +.......+..+|++|+|+|+.++...       .......++.. ...+|+|+|+||+||+.  ....+...+    .+
T Consensus       124 f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l  202 (483)
T 3p26_A          124 FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL  202 (483)
T ss_dssp             GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccchHHHHHHHHHHHHHHH
Confidence            455566678999999999999986321       11122222222 22357999999999986  222222222    22


Q ss_pred             hhh-C---CceEEEeeecCCCChHH
Q 018454          269 SKE-Y---PSLAFHASINKSFGKGS  289 (355)
Q Consensus       269 ~~~-~---p~~~f~vSa~~~~Gi~~  289 (355)
                      ... +   ...++.+||++|.|+.+
T Consensus       203 ~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          203 VDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHcCCCcccceEEEEeeecCCCccc
Confidence            211 1   24567899999999873

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=97.93  E-value=1.1e-06  Score=76.95  Aligned_cols=88  Identities=14%  Similarity=0.163  Sum_probs=50.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .+..+|++|+|+|+.++...  ..+..++..   . ..+.|+++|+||+||.+.... ..-...+...+...++.+||++
T Consensus       102 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~  179 (199)
T 3l0i_B          102 YYRGAHGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN  179 (199)
T ss_dssp             --CCCSEEEECC-CCCSHHH--HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC--
T ss_pred             HhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCC
Confidence            56789999999999986432  233333322   1 236899999999999754311 1111222223334466789999


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      +.|+++|++.|.+.+
T Consensus       180 g~gv~~l~~~l~~~l  194 (199)
T 3l0i_B          180 ATNVEQSFMTMAAEI  194 (199)
T ss_dssp             -HHHHHHHHHHTTTT
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999886544

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.93  E-value=2.7e-05  Score=76.59  Aligned_cols=101  Identities=13%  Similarity=0.073  Sum_probs=64.7

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCC-hhhH----HHHHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVP-AWAT----KGWLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp-~~~~----~~w~~~l~  269 (355)
                      +||. ++.......+..+|++|+|+|+.+............+..  .+.| +|+|+||+|+.. ....    .+..+.+.
T Consensus        74 pG~~-~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~  150 (397)
T 1d2e_A           74 PGHA-DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLT  150 (397)
T ss_dssp             SSHH-HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             CChH-HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence            4543 344566677899999999999998654333333333333  4677 689999999985 2211    12222333


Q ss_pred             hhC----CceEEEeeecCCCC----------hHHHHHHHHHHHh
Q 018454          270 KEY----PSLAFHASINKSFG----------KGSLLSVLRQFAR  299 (355)
Q Consensus       270 ~~~----p~~~f~vSa~~~~G----------i~~Ll~~L~q~~~  299 (355)
                      ...    ...++.+||+++.+          +.+|++.|.++++
T Consensus       151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            221    14577889998764          7788888887665

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.93  E-value=1.1e-05  Score=74.76  Aligned_cols=38  Identities=24%  Similarity=0.318  Sum_probs=34.9

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ...++|.++|.+|||||||||+|.+.....+++.+|+|
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t   74 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG   74 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc
Confidence            35789999999999999999999999888899999987

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.92  E-value=2.9e-05  Score=75.95  Aligned_cols=100  Identities=19%  Similarity=0.085  Sum_probs=64.4

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchH---HHHHHHhh-cCCCcEEEEEeccCCCChhhHH--HHHHHH-hhh-C
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHH---LERHLKEH-CKHKHMILLLNKCDLVPAWATK--GWLRVL-SKE-Y  272 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~---l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~--~w~~~l-~~~-~  272 (355)
                      ..+..+...+..+|++++|+|+.++.......   +...+... ..++|+|+|+||+|+++.....  .....+ ... .
T Consensus       246 e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~  325 (364)
T 2qtf_A          246 DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYS  325 (364)
T ss_dssp             HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcC
Confidence            34556677789999999999998774111111   23333331 2478999999999998643111  111111 111 1


Q ss_pred             C-ceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          273 P-SLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       273 p-~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      + ..++.+|++++.|+++|++.|.+.+..
T Consensus       326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          326 PIFDVIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             CEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence            1 235788999999999999999887653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.92  E-value=1.3e-05  Score=77.73  Aligned_cols=86  Identities=19%  Similarity=0.159  Sum_probs=57.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----C------CceEEE
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----Y------PSLAFH  278 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~------p~~~f~  278 (355)
                      ++..+|++|+|+|+......  ..+...+    ..+|.++|+||+|+.+..........+...    .      ...++.
T Consensus       189 ~~~~aD~vl~V~d~~~~~~~--~~l~~~~----~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~  262 (355)
T 3p32_A          189 VANMVDTFVLLTLARTGDQL--QGIKKGV----LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLT  262 (355)
T ss_dssp             HHTTCSEEEEEEESSTTCTT--TTCCTTS----GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEE
T ss_pred             HHHhCCEEEEEECCCCCccH--HHHHHhH----hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEE
Confidence            46899999999997643221  1111111    246899999999998654433333333321    1      234788


Q ss_pred             eeecCCCChHHHHHHHHHHHhh
Q 018454          279 ASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      +||+++.|+++|++.|.++...
T Consensus       263 iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          263 MSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             EBGGGTBSHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999887753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.91  E-value=4e-05  Score=69.87  Aligned_cols=98  Identities=15%  Similarity=0.050  Sum_probs=60.9

Q ss_pred             HHHHHhhhcCCCEEEEEecCCCCCCCcchH-HHHHH-H-hhcCCCcEEEEEeccCCCChhhH---HHHHH-------HH-
Q 018454          203 WGELYKVIDSSDVVVQVLDARDPQGTRCHH-LERHL-K-EHCKHKHMILLLNKCDLVPAWAT---KGWLR-------VL-  268 (355)
Q Consensus       203 ~~el~kvi~~sDvVL~VvDardp~~s~~~~-l~~~L-~-~~~~~k~vILVlNK~DLvp~~~~---~~w~~-------~l-  268 (355)
                      ...+...+.. ++||+|+|+.......... ..... . ....++|+++|+||+|+.+....   ..+.+       .+ 
T Consensus       129 ~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~  207 (262)
T 1yrb_A          129 GVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLK  207 (262)
T ss_dssp             HHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHh
Confidence            3445556677 9999999987554322211 11001 1 01136899999999999875422   22211       11 


Q ss_pred             -----------------hhhCC-ceEEEeeecCCCChHHHHHHHHHHHhhh
Q 018454          269 -----------------SKEYP-SLAFHASINKSFGKGSLLSVLRQFARLK  301 (355)
Q Consensus       269 -----------------~~~~p-~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~  301 (355)
                                       ....+ ..++.+|++++.|+++|++.|.+.++..
T Consensus       208 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          208 LDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence                             12223 2568889999999999999998877643

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.91  E-value=3.5e-05  Score=80.16  Aligned_cols=89  Identities=17%  Similarity=0.170  Sum_probs=61.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh-------------------------HHH
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-------------------------TKG  263 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------------------~~~  263 (355)
                      .+..+|++|+|+|+.++..........++..  .+.|+|+|+||+|+.+.+.                         ...
T Consensus        90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~e  167 (594)
T 1g7s_A           90 GGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYE  167 (594)
T ss_dssp             SSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHH
Confidence            4678999999999998654434444445544  5789999999999975321                         011


Q ss_pred             HHHHHhhhC--------------CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          264 WLRVLSKEY--------------PSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       264 w~~~l~~~~--------------p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ....+...+              .+.++.+||++|.|+++|++.|..+++
T Consensus       168 i~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          168 LVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            222232211              125678899999999999999987765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.90  E-value=1.2e-05  Score=82.06  Aligned_cols=88  Identities=20%  Similarity=0.239  Sum_probs=57.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeeecCCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASINKSFG  286 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa~~~~G  286 (355)
                      .+..+|++|+|+|+.++  .....+...+.....+.|+|+|+||+|+.+...  .+.....+ ......+|.+||+++.|
T Consensus       118 ~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-~~~~~~~~~vSA~~g~g  194 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERF-PAIENRFHRISCKNGDG  194 (535)
T ss_dssp             HHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHC-GGGTTCEEECCC-----
T ss_pred             HccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHH-HhcCCceEEEecCcccC
Confidence            35679999999999865  333445555555445699999999999986432  22222222 22334578899999999


Q ss_pred             hHHHHHHHHHHHh
Q 018454          287 KGSLLSVLRQFAR  299 (355)
Q Consensus       287 i~~Ll~~L~q~~~  299 (355)
                      +++|++.|.+.+.
T Consensus       195 i~eL~~~l~~~~~  207 (535)
T 3dpu_A          195 VESIAKSLKSAVL  207 (535)
T ss_dssp             CTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987765

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.90  E-value=4.2e-05  Score=74.92  Aligned_cols=94  Identities=13%  Similarity=0.022  Sum_probs=60.7

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcE-EEEEe-ccCCCChhhHHH----HHHHHhhhC--C
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM-ILLLN-KCDLVPAWATKG----WLRVLSKEY--P  273 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~v-ILVlN-K~DLvp~~~~~~----w~~~l~~~~--p  273 (355)
                      +...+...+..+|++|+|+| .+............+..  .+.|. |+|+| |+|+ +......    ..+.+....  .
T Consensus        73 f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~  148 (370)
T 2elf_A           73 TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQD  148 (370)
T ss_dssp             CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTT
T ss_pred             HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCc
Confidence            34455567789999999999 65433222233333332  46777 99999 9999 6433222    222222211  2


Q ss_pred             ceEEE--eeecC---CCChHHHHHHHHHHHh
Q 018454          274 SLAFH--ASINK---SFGKGSLLSVLRQFAR  299 (355)
Q Consensus       274 ~~~f~--vSa~~---~~Gi~~Ll~~L~q~~~  299 (355)
                      ..++.  +||++   +.|+++|++.|.++++
T Consensus       149 ~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          149 WECISLNTNKSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             CEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred             eEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence            45778  99999   9999999998887765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.89  E-value=9.8e-06  Score=72.72  Aligned_cols=43  Identities=30%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQ  347 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~  347 (355)
                      ....+|.|+|.+|||||||||+|.+.... +++.|++|+..++.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~   69 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVG   69 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeee
Confidence            45689999999999999999999987754 77889988655443

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.86  E-value=5e-06  Score=85.57  Aligned_cols=113  Identities=21%  Similarity=0.259  Sum_probs=75.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHh---hhC--CceEEEeee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLS---KEY--PSLAFHASI  281 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~---~~~--p~~~f~vSa  281 (355)
                      .+..+|++|+|+|+.++...........+..  .+.|+|+|+||+|+....  ........+.   ..+  ...++.+||
T Consensus        72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSA  149 (537)
T 3izy_P           72 GTQVTDIVILVVAADDGVMKQTVESIQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSA  149 (537)
T ss_dssp             SSBSBSSCEEECBSSSCCCHHHHHHHHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCS
T ss_pred             HHccCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEEC
Confidence            5678999999999998765444444444443  578999999999997432  1111111111   111  235677899


Q ss_pred             cCCCChHHHHHHHHHHHhhhc--------------------cccceEEEEeecCCCChhHHH
Q 018454          282 NKSFGKGSLLSVLRQFARLKS--------------------DKQAISVGFVGYPNVGKSSVI  323 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~~~~--------------------~~~~i~V~~vG~pNVGKSSLI  323 (355)
                      ++|.|+++|++.|..++....                    ....+..+.|+..++++++.|
T Consensus       150 ktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v  211 (537)
T 3izy_P          150 LTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL  211 (537)
T ss_dssp             SSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred             CCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence            999999999999987765311                    123456688888888887754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.86  E-value=5.2e-06  Score=82.37  Aligned_cols=39  Identities=28%  Similarity=0.357  Sum_probs=23.3

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW  343 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~  343 (355)
                      ..+.+|++||.||||||||+|+|.+... .++++|++|..
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~   58 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTID   58 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC--------------C
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccC
Confidence            3567899999999999999999998775 88899998854

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.86  E-value=2.9e-05  Score=77.32  Aligned_cols=85  Identities=16%  Similarity=0.087  Sum_probs=53.8

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hh----HHHHHHHHhhhC---C-
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WA----TKGWLRVLSKEY---P-  273 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~----~~~w~~~l~~~~---p-  273 (355)
                      ......+..+|++|+|+|+.++...........+.. ..-+++|+|+||+||++.  ..    ...+.+.+....   . 
T Consensus       119 ~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~  197 (434)
T 1zun_B          119 RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTT  197 (434)
T ss_dssp             HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSE
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccC
Confidence            334456799999999999998764333333333332 122468999999999862  21    223333333322   1 


Q ss_pred             ceEEEeeecCCCChHH
Q 018454          274 SLAFHASINKSFGKGS  289 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~  289 (355)
                      ..++.+||++|.|+.+
T Consensus       198 ~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          198 MAFVPMSALKGDNVVN  213 (434)
T ss_dssp             EEEEECCTTTCTTTSS
T ss_pred             ceEEEEeccCCCCccc
Confidence            4567889999999886

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.84  E-value=5.6e-06  Score=72.69  Aligned_cols=39  Identities=31%  Similarity=0.335  Sum_probs=24.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCeeE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVWY  342 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT~  342 (355)
                      ..+..|+++|.+|||||||||+|.+.. ...++|.+|+|.
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~   63 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ   63 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence            456789999999999999999999876 677889999983

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.84  E-value=1.2e-05  Score=69.06  Aligned_cols=38  Identities=32%  Similarity=0.353  Sum_probs=34.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeE
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWY  342 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~  342 (355)
                      ...+|.++|.+|||||||||+|.+.....+++.+|+|+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~   59 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTR   59 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCcc
Confidence            45789999999999999999999988888999999883

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.84  E-value=1.9e-05  Score=83.48  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=34.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV  340 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt  340 (355)
                      ..++.|+|+|.||||||||||+|++...+.+++.|+|
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T  103 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT  103 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence            3578999999999999999999999999999999998

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.83  E-value=1.3e-05  Score=69.20  Aligned_cols=38  Identities=26%  Similarity=0.241  Sum_probs=23.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT  341 (355)
                      ....+|.++|.+|||||||||+|.+.. ...+++.||+|
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t   59 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKT   59 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCce
Confidence            356889999999999999999999886 67788999988

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.81  E-value=1.3e-05  Score=73.55  Aligned_cols=40  Identities=20%  Similarity=0.140  Sum_probs=32.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCC-eeEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV-VWYW  343 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG-tT~~  343 (355)
                      ...+.|+|+|.||||||||+|+|++.....++..|+ +|+.
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~   60 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKT   60 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeee
Confidence            356899999999999999999999988777776676 5543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.79  E-value=3.1e-05  Score=67.74  Aligned_cols=90  Identities=18%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             hcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCC
Q 018454          210 IDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       210 i~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      ...+|.+|+|+|+.++.+... ..+...+...  ..+.|+|+|.||+||..... .......+...+....+.+||++|.
T Consensus        78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~  157 (192)
T 2cjw_A           78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQH  157 (192)
T ss_dssp             HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred             cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCC
Confidence            345789999999887643211 1222223321  24789999999999964321 1111122323344456789999999


Q ss_pred             ChHHHHHHHHHHHh
Q 018454          286 GKGSLLSVLRQFAR  299 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~  299 (355)
                      |+++|++.|.+.+.
T Consensus       158 ~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          158 NVKELFEGIVRQVR  171 (192)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999998876553

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.78  E-value=1.7e-05  Score=73.80  Aligned_cols=85  Identities=9%  Similarity=0.097  Sum_probs=47.5

Q ss_pred             CCCEEEEEecCCC-CCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh---CCceEEEeeecCCCCh
Q 018454          212 SSDVVVQVLDARD-PQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE---YPSLAFHASINKSFGK  287 (355)
Q Consensus       212 ~sDvVL~VvDard-p~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~---~p~~~f~vSa~~~~Gi  287 (355)
                      .+|++|+++|... +....+..+.+.+.   .++|+|+|+||+|+++..........+.+.   ....++.+|+.++.|+
T Consensus       115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~---~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~  191 (274)
T 3t5d_A          115 RVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEE  191 (274)
T ss_dssp             CCCEEEEEECSCCSSCCHHHHHHHHHHT---TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC--------
T ss_pred             ceeEEEEEecCCCCCCCHHHHHHHHHHh---ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence            4778888886543 55444555555554   379999999999998766554443333222   3444566799999999


Q ss_pred             HHHHHHHHHHHh
Q 018454          288 GSLLSVLRQFAR  299 (355)
Q Consensus       288 ~~Ll~~L~q~~~  299 (355)
                      ++|.+.|.+..+
T Consensus       192 ~~l~~~l~~~~p  203 (274)
T 3t5d_A          192 NKLVKKIKDRLP  203 (274)
T ss_dssp             ---CHHHHHTCS
T ss_pred             HHHHHHHhcCCC
Confidence            999999887654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.78  E-value=3e-05  Score=66.08  Aligned_cols=38  Identities=16%  Similarity=0.299  Sum_probs=33.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .+.++|.++|.+|||||||||+|.+.....+.|..|.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~   53 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN   53 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc
Confidence            46799999999999999999999987777778888864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.77  E-value=1.1e-05  Score=71.37  Aligned_cols=40  Identities=23%  Similarity=0.242  Sum_probs=35.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCeeEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVWYW  343 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT~~  343 (355)
                      ...++|+++|.+|||||||||+|.+.. ...+++.||+|+.
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~   67 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQH   67 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccc
Confidence            346789999999999999999999987 5789999999844

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.75  E-value=1.8e-05  Score=72.60  Aligned_cols=97  Identities=12%  Similarity=0.031  Sum_probs=61.9

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhc---CCCcEEEEEe-ccCCCChhhHHH------------HH
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC---KHKHMILLLN-KCDLVPAWATKG------------WL  265 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~---~~k~vILVlN-K~DLvp~~~~~~------------w~  265 (355)
                      +.+.+...+..+|++|+|+|+.+ .......+.+.+.+..   ...|.|+|+| |+|+.... ...            +.
T Consensus        95 i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~  172 (260)
T 2xtp_A           95 VQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLV  172 (260)
T ss_dssp             HHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHH
Confidence            34455557789999999999986 3333334444454321   1468888888 99998542 222            22


Q ss_pred             HHHhhhCC-ceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          266 RVLSKEYP-SLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       266 ~~l~~~~p-~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ..+...+. ...+.+||+++.|+++|++.|.+.+..
T Consensus       173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            33322111 111567999999999999999887764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.73  E-value=2.9e-05  Score=72.89  Aligned_cols=96  Identities=14%  Similarity=0.121  Sum_probs=63.2

Q ss_pred             HHHHHHHhhhcCCCEEEEEecC-CCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-CC--ce
Q 018454          201 RIWGELYKVIDSSDVVVQVLDA-RDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-YP--SL  275 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDa-rdp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-~p--~~  275 (355)
                      .+...+...+..+|++|+|+|+ ........ ..+.+++..  .++|+++|+||+|+++...  .+.+.+... .+  ..
T Consensus       156 ~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~  231 (315)
T 1jwy_B          156 QIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLG  231 (315)
T ss_dssp             HHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTC
T ss_pred             HHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCC
Confidence            4556677888999999999997 43433333 355555543  4789999999999986542  122223221 11  12


Q ss_pred             E---EEeeecC---CCChHHHHHHHHHHHhh
Q 018454          276 A---FHASINK---SFGKGSLLSVLRQFARL  300 (355)
Q Consensus       276 ~---f~vSa~~---~~Gi~~Ll~~L~q~~~~  300 (355)
                      .   +.+|+.+   +.|+.+|++.+.++++.
T Consensus       232 ~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          232 FIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             EEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             eEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            2   2346666   78999999999988864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.73  E-value=4.4e-05  Score=71.72  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhhhc--cccceEEEEeecCCCChhHHHHHhhccCc-----cccCCCCCe
Q 018454          289 SLLSVLRQFARLKS--DKQAISVGFVGYPNVGKSSVINTLRTKNV-----ILFFPASVV  340 (355)
Q Consensus       289 ~Ll~~L~q~~~~~~--~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-----~~vs~iPGt  340 (355)
                      .+++.|.+.+....  ......|+|||.||||||||||+|.+...     ..++..||.
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~   63 (315)
T 1jwy_B            5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLI   63 (315)
T ss_dssp             HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEE
T ss_pred             HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEE
Confidence            34555555443211  23446799999999999999999999876     445556654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.72  E-value=4.4e-05  Score=73.84  Aligned_cols=56  Identities=20%  Similarity=0.231  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHhhhc---cccceEEEEeecCCCChhHHHHHhhccCcc-----ccCCCCCeeE
Q 018454          287 KGSLLSVLRQFARLKS---DKQAISVGFVGYPNVGKSSVINTLRTKNVI-----LFFPASVVWY  342 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~---~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-----~vs~iPGtT~  342 (355)
                      +..|++.|.+.+....   +-....|+|||.||||||||||+|.+...+     .++..|+.++
T Consensus         9 l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~   72 (353)
T 2x2e_A            9 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQ   72 (353)
T ss_dssp             CHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEE
Confidence            3445555554443221   223568999999999999999999998776     6677788653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.71  E-value=2.1e-05  Score=73.19  Aligned_cols=92  Identities=15%  Similarity=0.179  Sum_probs=59.5

Q ss_pred             HHHHHHhhhcCCCEEE-EEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhh-C----C
Q 018454          202 IWGELYKVIDSSDVVV-QVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKE-Y----P  273 (355)
Q Consensus       202 i~~el~kvi~~sDvVL-~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~-~----p  273 (355)
                      ....+...+..+|.+| +|+|+.++....+. .+.+.+..  .+.|+++|+||+|+++... ...   .+... .    .
T Consensus       151 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~---~~~~~~~~~~~~  225 (299)
T 2aka_B          151 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEGTDARD---VLENKLLPLRRG  225 (299)
T ss_dssp             HHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECGGGSCTTCCCHH---HHTTCSSCCTTC
T ss_pred             HHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEccccCCCCchHHH---HHhCCcCcCCCC
Confidence            3344556777777555 79999876544332 24444432  4789999999999986532 222   22221 1    1


Q ss_pred             -ceEEEeeecCCCChHHHHHHHHHHH
Q 018454          274 -SLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       274 -~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                       ..++.+||+++.|+++|++.|.+..
T Consensus       226 ~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          226 YIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             EEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             cEEEECCChhhccccccHHHHHHHHH
Confidence             2356689999999999999887643

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.69  E-value=6.3e-05  Score=79.54  Aligned_cols=94  Identities=16%  Similarity=0.154  Sum_probs=62.1

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHH-HHHHHhhcCCCcEEEEEeccCCCChh--------hHH----HH----HH
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHL-ERHLKEHCKHKHMILLLNKCDLVPAW--------ATK----GW----LR  266 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l-~~~L~~~~~~k~vILVlNK~DLvp~~--------~~~----~w----~~  266 (355)
                      ..+...+..+|+||+|+|+.++....+..+ .+.+..  .++|+++|+||+|+++..        ...    ..    ..
T Consensus       192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~  269 (695)
T 2j69_A          192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNA  269 (695)
T ss_dssp             HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHH
Confidence            445567889999999999988765433222 223322  367899999999997543        111    11    11


Q ss_pred             HHhhhC--------CceEEEeeec--------------CCCChHHHHHHHHHHHh
Q 018454          267 VLSKEY--------PSLAFHASIN--------------KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       267 ~l~~~~--------p~~~f~vSa~--------------~~~Gi~~Ll~~L~q~~~  299 (355)
                      .+....        ...+|.+|++              ++.|+++|.+.|.+++.
T Consensus       270 ~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          270 NLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             HHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence            222211        1246889999              99999999999887764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.69  E-value=0.00025  Score=61.91  Aligned_cols=91  Identities=16%  Similarity=0.078  Sum_probs=62.9

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH----HHHHHHHhhhC-CceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSKEY-PSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~~~-p~~~f~vSa  281 (355)
                      ......+|.+++|+|+.++.......+..++..  .+.|.++|.||+|+++....    ......+.... ....+.+|+
T Consensus       103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  180 (210)
T 1pui_A          103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSS  180 (210)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBT
T ss_pred             HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEee
Confidence            333467899999999998765444445555543  57899999999999875422    22222232221 234667899


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +++.|+++|++.|.++..
T Consensus       181 l~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          181 LKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             TTTBSHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHHh
Confidence            999999999999988764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.68  E-value=3.3e-05  Score=67.53  Aligned_cols=28  Identities=18%  Similarity=0.357  Sum_probs=23.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ...++|+|+|.+|||||||||+|.+...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~   45 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKF   45 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCC
Confidence            3568999999999999999999997654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.67  E-value=3.9e-05  Score=81.95  Aligned_cols=82  Identities=15%  Similarity=0.131  Sum_probs=59.2

Q ss_pred             cCCCEEEEEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh-hC----C-ceEEEeeecC
Q 018454          211 DSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK-EY----P-SLAFHASINK  283 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~-~~----p-~~~f~vSa~~  283 (355)
                      ..+|+||+|+|+..+....+. .+.+.+..  .++|+|+|+||+|+++.....  ...+.. .+    + ..++.+||.+
T Consensus       186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~  261 (772)
T 3zvr_A          186 KENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKD  261 (772)
T ss_dssp             STTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEE
T ss_pred             cCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEecccc
Confidence            688999999999988766654 56666654  478999999999999754321  111111 11    1 2345679999


Q ss_pred             CCChHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQ  296 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q  296 (355)
                      +.|+++|++.|.+
T Consensus       262 G~GvdeL~eaI~~  274 (772)
T 3zvr_A          262 IDGKKDITAALAA  274 (772)
T ss_dssp             SSSSEEHHHHHHH
T ss_pred             cccchhHHHHHHH
Confidence            9999999999876

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.67  E-value=4.3e-05  Score=65.82  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=32.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .+.++|.++|.+|||||||||+|.+.....+.|..|.+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~   51 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN   51 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccc
Confidence            56799999999999999999999977766777777754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.67  E-value=2.3e-05  Score=70.54  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=23.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ..++|.+||.||||||||+|+|.+...
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~   62 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHD   62 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence            458899999999999999999997554

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.67  E-value=4.6e-05  Score=65.31  Aligned_cols=38  Identities=16%  Similarity=0.316  Sum_probs=31.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .+.++|.++|.+|||||||||+|.+.......|..|.+
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~   53 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN   53 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc
Confidence            46799999999999999999999987766667777755

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.64  E-value=0.00014  Score=68.94  Aligned_cols=85  Identities=21%  Similarity=0.211  Sum_probs=53.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcch-HHHHHHHh---hcCCCcEEEEEeccCCCChhhH-------HHHHHHHhhhCC---
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCH-HLERHLKE---HCKHKHMILLLNKCDLVPAWAT-------KGWLRVLSKEYP---  273 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~-~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~-------~~w~~~l~~~~p---  273 (355)
                      ..+..+|++|+|+|+.++...... .+..++..   ..++.|+++|+||+||......       ......+...+.   
T Consensus        76 ~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~  155 (307)
T 3r7w_A           76 HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPN  155 (307)
T ss_dssp             HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence            456789999999999987543221 22222322   2357999999999999873221       123333444443   


Q ss_pred             ceEEEeeecCCCChHHHHHH
Q 018454          274 SLAFHASINKSFGKGSLLSV  293 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~  293 (355)
                      ...+.+||++ .|+.+++..
T Consensus       156 ~~~~~tSa~~-~~i~e~~~~  174 (307)
T 3r7w_A          156 LIGFPTSIWD-ESLYKAWSQ  174 (307)
T ss_dssp             CEEEECCTTS-SHHHHHHHH
T ss_pred             eEEEEeeecC-ChHHHHHHH
Confidence            5677889988 566555443

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.64  E-value=0.00016  Score=80.32  Aligned_cols=101  Identities=18%  Similarity=0.114  Sum_probs=67.5

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChh-hH----HHHHHHHh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAW-AT----KGWLRVLS  269 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~-~~----~~w~~~l~  269 (355)
                      +||. ++.......+..+|++|+|+|+.++...........+..  .+.| +|+|+||+|++... ..    .+..+.+.
T Consensus       367 PGHe-dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk  443 (1289)
T 3avx_A          367 PGHA-DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLS  443 (1289)
T ss_dssp             CCHH-HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             CChH-HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence            5663 456677778899999999999998765544443344433  3677 78999999998522 11    22222333


Q ss_pred             hhC----CceEEEeeecCC--------CChHHHHHHHHHHHh
Q 018454          270 KEY----PSLAFHASINKS--------FGKGSLLSVLRQFAR  299 (355)
Q Consensus       270 ~~~----p~~~f~vSa~~~--------~Gi~~Ll~~L~q~~~  299 (355)
                      ...    ...++.+|++++        .|+.+|++.|.++++
T Consensus       444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            221    145788999998        468888888877654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=97.63  E-value=2.7e-05  Score=67.10  Aligned_cols=38  Identities=29%  Similarity=0.410  Sum_probs=32.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ++.++|.++|.+|||||||||+|.........|..|.+
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~   57 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN   57 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE
Confidence            46799999999999999999999987776667766754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.63  E-value=3.6e-05  Score=66.38  Aligned_cols=38  Identities=18%  Similarity=0.393  Sum_probs=33.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ...++|.++|.+|||||||+|+|.+.....+.|.+|.+
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~   51 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN   51 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE
Confidence            45789999999999999999999998877788888865

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.63  E-value=2.8e-05  Score=70.45  Aligned_cols=30  Identities=23%  Similarity=0.369  Sum_probs=25.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL  333 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~  333 (355)
                      ...++|+|||.+|||||||||+|++.....
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~   56 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFH   56 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCc
Confidence            356899999999999999999999877643

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.62  E-value=0.00014  Score=72.35  Aligned_cols=85  Identities=11%  Similarity=0.011  Sum_probs=51.9

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCC-------CCCcchHHHHHHHhhcCC-CcEEEEEeccCCCCh----hh----HHHHH
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDP-------QGTRCHHLERHLKEHCKH-KHMILLLNKCDLVPA----WA----TKGWL  265 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp-------~~s~~~~l~~~L~~~~~~-k~vILVlNK~DLvp~----~~----~~~w~  265 (355)
                      +.......+..+|++|+|+|+.+.       ..........++..  .+ .++|+|+||+|+++.    ..    .++..
T Consensus        97 f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~  174 (435)
T 1jny_A           97 FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVS  174 (435)
T ss_dssp             HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence            334556688999999999999984       21111222222222  24 468999999999872    11    12222


Q ss_pred             HHHhhhC--C--ceEEEeeecCCCChH
Q 018454          266 RVLSKEY--P--SLAFHASINKSFGKG  288 (355)
Q Consensus       266 ~~l~~~~--p--~~~f~vSa~~~~Gi~  288 (355)
                      +.+....  +  ..++.+||++|.|+.
T Consensus       175 ~~~~~~~~~~~~~~~i~iSA~~g~~v~  201 (435)
T 1jny_A          175 KFMRSYGFNTNKVRFVPVVAPSGDNIT  201 (435)
T ss_dssp             HHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHcCCCcCCceEEEeecccCcccc
Confidence            3333221  1  457889999999986

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.61  E-value=6.5e-05  Score=78.11  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcc-ccCCCC-Cee--EEEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPAS-VVW--YWFY  345 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iP-GtT--~~~y  345 (355)
                      ...+.|+|||.||||||||||+|.+.... .++..+ ++|  .|+|
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~   81 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW   81 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe
Confidence            45678999999999999999999998743 333322 344  5554

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.61  E-value=5.7e-05  Score=65.72  Aligned_cols=38  Identities=18%  Similarity=0.315  Sum_probs=31.1

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .+.++|+++|.+|||||||||+|.+.....+.|..|.+
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~   58 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT   58 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC
Confidence            35678999999999999999999988777777777776

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.61  E-value=2.2e-05  Score=81.56  Aligned_cols=89  Identities=19%  Similarity=0.115  Sum_probs=51.1

Q ss_pred             hhcCCCEEEEEecCCCCC-------CCcchHHHHHHHhhcCCCc-EEEEEeccCCCC--hhhHH----HHHHHH-hhh-C
Q 018454          209 VIDSSDVVVQVLDARDPQ-------GTRCHHLERHLKEHCKHKH-MILLLNKCDLVP--AWATK----GWLRVL-SKE-Y  272 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~-------~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp--~~~~~----~w~~~l-~~~-~  272 (355)
                      .+..+|++|+|+|+.++.       ..........+..  .+.| +|+|+||+||+.  .....    .....+ ... +
T Consensus       275 ~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~  352 (592)
T 3mca_A          275 GASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGF  352 (592)
T ss_dssp             -------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCC
T ss_pred             HHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCC
Confidence            467799999999999753       2222222333332  3565 899999999986  22222    222223 111 1


Q ss_pred             ---CceEEEeeecCCCChH--------------HHHHHHHHHHh
Q 018454          273 ---PSLAFHASINKSFGKG--------------SLLSVLRQFAR  299 (355)
Q Consensus       273 ---p~~~f~vSa~~~~Gi~--------------~Ll~~L~q~~~  299 (355)
                         ...++.+||++|.|+.              .|++.|..+.+
T Consensus       353 ~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          353 KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             CGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             CccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence               1246789999999997              78888876654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.57  E-value=8.5e-05  Score=63.92  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=29.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEE
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFY  345 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y  345 (355)
                      ..++|.|+|.+|||||||||+|.+.... ....|+++.+.+
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~   54 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFK   54 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEE
Confidence            4689999999999999999999976533 233354443333

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.57  E-value=7.5e-05  Score=66.11  Aligned_cols=82  Identities=13%  Similarity=0.144  Sum_probs=55.1

Q ss_pred             CCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHhhhCC-ceEEEeeecCCCChH
Q 018454          212 SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEYP-SLAFHASINKSFGKG  288 (355)
Q Consensus       212 ~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~~p-~~~f~vSa~~~~Gi~  288 (355)
                      .++.+|+|+|+.++..    .+..+...  .+.|.++|+||+|+.+..  ......+.+....+ ..++.+|++++.|++
T Consensus       129 ~~~~~i~vvd~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~  202 (221)
T 2wsm_A          129 GENYRVVMVSVTEGDD----VVEKHPEI--FRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFE  202 (221)
T ss_dssp             SCSEEEEEEEGGGCTT----HHHHCHHH--HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHH
T ss_pred             ccCcEEEEEeCCCcch----hhhhhhhh--hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHH
Confidence            4578999999987532    12222221  247899999999996532  23334444443333 457789999999999


Q ss_pred             HHHHHHHHHHh
Q 018454          289 SLLSVLRQFAR  299 (355)
Q Consensus       289 ~Ll~~L~q~~~  299 (355)
                      +|++.|.+.+.
T Consensus       203 ~l~~~l~~~~~  213 (221)
T 2wsm_A          203 EWIDFLRGILN  213 (221)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.56  E-value=9.2e-05  Score=62.34  Aligned_cols=28  Identities=25%  Similarity=0.396  Sum_probs=24.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      ..++|.++|.+|||||||||+|.+....
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~   40 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFD   40 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            4588999999999999999999976543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.56  E-value=4.6e-05  Score=65.39  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=32.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .+.++|.++|.+|||||||||+|.+.....+.|.+|.+
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~   56 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN   56 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCcee
Confidence            45789999999999999999999988877788888865

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.55  E-value=7.8e-05  Score=64.64  Aligned_cols=38  Identities=21%  Similarity=0.250  Sum_probs=32.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc-cccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV-ILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-~~vs~iPGtT  341 (355)
                      ...++|+++|.+|||||||||+|.+... ..+.|.+|+|
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~   59 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS   59 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCccee
Confidence            4578999999999999999999998764 3678888876

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.54  E-value=5.7e-05  Score=73.27  Aligned_cols=24  Identities=38%  Similarity=0.582  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ....|+|+|+||||||||||+|.+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999999986

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.54  E-value=7.4e-05  Score=64.81  Aligned_cols=28  Identities=25%  Similarity=0.197  Sum_probs=24.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ...++|+|+|.+|||||||||+|.+...
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~   39 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEF   39 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCC
Confidence            4568999999999999999999998763

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.52  E-value=0.0002  Score=72.09  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=48.1

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCC--------CCcchHHHHHHHhhcCCCc-EEEEEeccCCCC----hhh----HHHH
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQ--------GTRCHHLERHLKEHCKHKH-MILLLNKCDLVP----AWA----TKGW  264 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~--------~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp----~~~----~~~w  264 (355)
                      +.......+..+|++|+|+|+.+..        .....++ ..+..  .+.| +|+|+||+||.+    ...    ..+.
T Consensus       134 f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~  210 (467)
T 1r5b_A          134 YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART--QGINHLVVVINKMDEPSVQWSEERYKECVDKL  210 (467)
T ss_dssp             --------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH--TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH-HHHHH--cCCCEEEEEEECccCCCccccHHHHHHHHHHH
Confidence            4445556788999999999999863        1111222 22222  4676 999999999964    111    1223


Q ss_pred             HHHHhhh--C----CceEEEeeecCCCChHH
Q 018454          265 LRVLSKE--Y----PSLAFHASINKSFGKGS  289 (355)
Q Consensus       265 ~~~l~~~--~----p~~~f~vSa~~~~Gi~~  289 (355)
                      ...+...  +    ...++.+|+++|.|+.+
T Consensus       211 ~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~  241 (467)
T 1r5b_A          211 SMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD  241 (467)
T ss_dssp             HHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred             HHHHHHhcCCCccCCceEEeccccccccccc
Confidence            3333322  1    23467889999999875

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.0001  Score=76.80  Aligned_cols=93  Identities=14%  Similarity=0.013  Sum_probs=55.2

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-------CCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhH----H
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-------GTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WAT----K  262 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-------~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~----~  262 (355)
                      +|| .++.......+..+|++|+|+|+.++.       ..........+.. ....++|+|+||+|+++.  ...    .
T Consensus       253 PG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iIVVvNKiDl~~~~~~~~~ei~~  330 (611)
T 3izq_1          253 PGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWSQQRFEEIKS  330 (611)
T ss_dssp             CSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEEEEEECTTTTTTCHHHHHHHHH
T ss_pred             CCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEEEEEecccccchhHHHHHHHHH
Confidence            344 335566667889999999999998741       1111222222222 123459999999999872  111    1


Q ss_pred             HHHHHHhhhC----CceEEEeeecCCCChHHH
Q 018454          263 GWLRVLSKEY----PSLAFHASINKSFGKGSL  290 (355)
Q Consensus       263 ~w~~~l~~~~----p~~~f~vSa~~~~Gi~~L  290 (355)
                      .....+....    ...++.+||++|.|+.+|
T Consensus       331 ~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          331 KLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            2222222211    245788999999999743

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.49  E-value=9.1e-05  Score=63.88  Aligned_cols=39  Identities=21%  Similarity=0.217  Sum_probs=29.9

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcccc--CCCCCeeE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILF--FPASVVWY  342 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v--s~iPGtT~  342 (355)
                      ....+|.|+|.+|||||||||+|.+.....+  .|..|.+.
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~   55 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV   55 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE
Confidence            4568899999999999999999999887766  77778653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.48  E-value=0.00012  Score=63.91  Aligned_cols=29  Identities=24%  Similarity=0.312  Sum_probs=25.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      .+.++|.|+|.+|||||||||+|.+....
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~   50 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS   50 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            45789999999999999999999987654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.47  E-value=0.0001  Score=62.48  Aligned_cols=27  Identities=26%  Similarity=0.230  Sum_probs=24.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ..++|.|+|.+|||||||||+|.+...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~   43 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEF   43 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC
Confidence            468899999999999999999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.47  E-value=4.4e-05  Score=66.93  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=22.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ...++|.|||.+|||||||||+|.+.
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhc
Confidence            35689999999999999999999754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=97.46  E-value=3.8e-05  Score=74.61  Aligned_cols=35  Identities=26%  Similarity=0.448  Sum_probs=29.6

Q ss_pred             EEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW  343 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~  343 (355)
                      .|+|||+||||||||||+|...+ ..++.+|++|..
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~  194 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLV  194 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccC
Confidence            68999999999999999999765 456788888744

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.46  E-value=0.00021  Score=75.18  Aligned_cols=51  Identities=12%  Similarity=0.114  Sum_probs=38.8

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      .++...+..+|.+++|+|+.+........+.+.+..  .+.|+|+|+||+|+.
T Consensus        89 ~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           89 GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchh
Confidence            456667888999999999987765444444444443  479999999999987

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.46  E-value=0.00015  Score=63.82  Aligned_cols=28  Identities=32%  Similarity=0.373  Sum_probs=23.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      .+.++|.++|.+|||||||||+|.....
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~   55 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAF   55 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCC
Confidence            4679999999999999999999997543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.45  E-value=0.00031  Score=68.03  Aligned_cols=85  Identities=14%  Similarity=0.149  Sum_probs=52.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH----HHHHHHHhhhC------CceEEE
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSKEY------PSLAFH  278 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~~~------p~~~f~  278 (355)
                      +.+.+|++++|+|+.++...  ..+...+    ...+.++|+||+|+.+....    ..+...+....      ...++.
T Consensus       184 l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~  257 (349)
T 2www_A          184 VADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIR  257 (349)
T ss_dssp             HHTTCSEEEEEECCC------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEE
T ss_pred             HHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEE
Confidence            46789999999998765321  1121112    24688999999999864322    22222222111      124577


Q ss_pred             eeecCCCChHHHHHHHHHHHh
Q 018454          279 ASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +|++++.|+++|++.|.++..
T Consensus       258 iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          258 ISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHH
Confidence            899999999999999988764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.45  E-value=0.00037  Score=71.45  Aligned_cols=53  Identities=19%  Similarity=0.291  Sum_probs=39.1

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA  258 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~  258 (355)
                      ..+...+..+|.+|+|+|+.++.......+...+..  .+.|+++|+||+|+...
T Consensus        97 ~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~--~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           97 EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL--RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred             HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence            345667899999999999998764433444444332  47899999999999753

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.44  E-value=0.0003  Score=74.33  Aligned_cols=53  Identities=19%  Similarity=0.151  Sum_probs=39.7

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA  258 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~  258 (355)
                      .++...+..+|.+|+|+|+.+........+...+..  .+.|+++|+||+|+...
T Consensus        92 ~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           92 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred             HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCcccC
Confidence            445667788999999999998765544444444443  57999999999999753

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.44  E-value=5.3e-05  Score=77.31  Aligned_cols=85  Identities=25%  Similarity=0.221  Sum_probs=57.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHh------hhC--CceEEEee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLS------KEY--PSLAFHAS  280 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~------~~~--p~~~f~vS  280 (355)
                      .+..+|++|+|+|+.++...........+..  .+.|+|+|+||+|+..... ......+.      ..+  ...++.+|
T Consensus        71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vS  147 (501)
T 1zo1_I           71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVS  147 (501)
T ss_dssp             SSBSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECC
T ss_pred             HHhhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEe
Confidence            5688999999999998654444444444433  5789999999999964210 00111111      111  14578899


Q ss_pred             ecCCCChHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQ  296 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q  296 (355)
                      |++|.|+++|++.|..
T Consensus       148 AktG~gI~eLle~I~~  163 (501)
T 1zo1_I          148 AKAGTGIDELLDAILL  163 (501)
T ss_dssp             TTTCTTCTTHHHHTTT
T ss_pred             eeeccCcchhhhhhhh
Confidence            9999999999998754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=97.44  E-value=7.9e-05  Score=76.73  Aligned_cols=39  Identities=23%  Similarity=0.142  Sum_probs=34.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc--ccCCCCCeeEE
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI--LFFPASVVWYW  343 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~--~vs~iPGtT~~  343 (355)
                      ....|+|+|.+|||||||||+|++.+.+  .+++.|+||+.
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~  104 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF  104 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE
Confidence            4578999999999999999999999876  68999998743

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.43  E-value=0.00014  Score=62.82  Aligned_cols=28  Identities=25%  Similarity=0.442  Sum_probs=25.1

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ...++|.++|.+|||||||||+|.+...
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~   48 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEI   48 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCC
Confidence            4578999999999999999999998764

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.43  E-value=7.4e-05  Score=75.07  Aligned_cols=86  Identities=9%  Similarity=-0.086  Sum_probs=52.5

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCC-------cchHHHHHHHhhcCCCc-EEEEEeccCCCC--hhhHH----HHHH
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGT-------RCHHLERHLKEHCKHKH-MILLLNKCDLVP--AWATK----GWLR  266 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s-------~~~~l~~~L~~~~~~k~-vILVlNK~DLvp--~~~~~----~w~~  266 (355)
                      ++.......+..+|++|+|+|+.++...       ........+..  .+.| +|+|+||+||++  .....    +...
T Consensus        97 ~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~  174 (458)
T 1f60_A           97 DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDESRFQEIVKETSN  174 (458)
T ss_dssp             THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCHHHHHHHHHHHHH
Confidence            4555666788999999999999875311       11112222222  3554 899999999984  22211    2222


Q ss_pred             HHhhhC----CceEEEeeecCCCChH
Q 018454          267 VLSKEY----PSLAFHASINKSFGKG  288 (355)
Q Consensus       267 ~l~~~~----p~~~f~vSa~~~~Gi~  288 (355)
                      .+....    ...++.+||+++.|+.
T Consensus       175 ~l~~~g~~~~~~~~i~vSA~~g~nv~  200 (458)
T 1f60_A          175 FIKKVGYNPKTVPFVPISGWNGDNMI  200 (458)
T ss_dssp             HHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             HHHHcCCCccCceEEEeecccCcCcc
Confidence            222221    1457889999999975

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.00012  Score=63.02  Aligned_cols=49  Identities=18%  Similarity=0.108  Sum_probs=34.2

Q ss_pred             CCCChHHHHHHHHHHHhhh---ccccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          283 KSFGKGSLLSVLRQFARLK---SDKQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~~~---~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ....+..+.+.+.++....   .....+.|.++|.+|||||||||+|.+...
T Consensus        22 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~   73 (193)
T 2ged_A           22 NKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSV   73 (193)
T ss_dssp             TTTBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3345666776666654321   124568999999999999999999998753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=97.42  E-value=9.1e-05  Score=65.67  Aligned_cols=40  Identities=13%  Similarity=0.075  Sum_probs=32.3

Q ss_pred             ccceEEEEeecCCCChhHHHHHhh-ccCccccCCCCCeeEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLR-TKNVILFFPASVVWYW  343 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll-~~~~~~vs~iPGtT~~  343 (355)
                      ...++|.++|.+|||||||||+|+ +.....+.+.+|+|..
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~   53 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH   53 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE
Confidence            456899999999999999999955 4445667888998743

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.41  E-value=0.00011  Score=63.80  Aligned_cols=27  Identities=26%  Similarity=0.405  Sum_probs=22.1

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ...++|.++|.+|||||||||+|.+..
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence            457899999999999999999999765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.40  E-value=0.00036  Score=67.19  Aligned_cols=85  Identities=12%  Similarity=0.047  Sum_probs=53.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hC------CceEEE
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EY------PSLAFH  278 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~------p~~~f~  278 (355)
                      ++..+|++|+|+|+..+....  .+....    .+.|.++|+||+|+.+......+...+..    ..      ...++.
T Consensus       166 ~~~~aD~vl~Vvd~~~~~~~~--~l~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~  239 (341)
T 2p67_A          166 VARMVDCFISLQIAGGGDDLQ--GIKKGL----MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLT  239 (341)
T ss_dssp             HHTTCSEEEEEECC------C--CCCHHH----HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEE
T ss_pred             HHHhCCEEEEEEeCCccHHHH--HHHHhh----hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEE
Confidence            458999999999987543211  111111    13678999999999875433333333321    11      234678


Q ss_pred             eeecCCCChHHHHHHHHHHHh
Q 018454          279 ASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +||+++.|+++|++.|.+.+.
T Consensus       240 iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          240 CSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             CBGGGTBSHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999987654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.39  E-value=0.00014  Score=62.40  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=24.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      +.++|.++|.+|||||||||+|.+...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~   46 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHF   46 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCC
Confidence            458899999999999999999997653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.38  E-value=8.5e-05  Score=65.16  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=27.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .+..+|+++|.+|||||||||+|.+.....+.|..|.+
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~   60 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT   60 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce
Confidence            35678999999999999999999987766666666655

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.37  E-value=0.00014  Score=62.72  Aligned_cols=37  Identities=16%  Similarity=0.113  Sum_probs=27.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccc-cCCCCCe
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL-FFPASVV  340 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~-vs~iPGt  340 (355)
                      ...++|.|+|.+|||||||||+|.+..... ..+..|.
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~   55 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV   55 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce
Confidence            356899999999999999999999765433 3344443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.36  E-value=0.00017  Score=62.21  Aligned_cols=38  Identities=26%  Similarity=0.393  Sum_probs=28.9

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC--ccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN--VILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~--~~~vs~iPGtT  341 (355)
                      .+.++|.++|.+|||||||||+|.+..  .....+..|.+
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~   58 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS   58 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee
Confidence            456899999999999999999999876  33445555644

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.35  E-value=0.0002  Score=61.73  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=29.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcccc-CCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILF-FPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v-s~iPGtT  341 (355)
                      ...++|+|+|.+|||||||||+|.+...... .+..|.+
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~   61 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVE   61 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence            3468999999999999999999998765543 3334543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.35  E-value=0.00042  Score=73.17  Aligned_cols=52  Identities=25%  Similarity=0.243  Sum_probs=39.3

Q ss_pred             HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454          205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA  258 (355)
Q Consensus       205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~  258 (355)
                      ++...+..+|.+|+|+|+.++.......+...+..  .+.|+|+|+||+|+...
T Consensus        91 ~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           91 EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred             HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECCCcccc
Confidence            34556777999999999998765555455555544  47999999999999763

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.35  E-value=5.3e-05  Score=65.72  Aligned_cols=27  Identities=33%  Similarity=0.476  Sum_probs=7.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ...++|.|+|.+|||||||||+|.+..
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~   44 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKG   44 (208)
T ss_dssp             EEEEEEEEC------------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCC
Confidence            356899999999999999999999873

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.34  E-value=0.00019  Score=61.97  Aligned_cols=38  Identities=18%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcc-ccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iPGtT  341 (355)
                      ++.++|.|+|.+|||||||||+|.+.... ...|..|.+
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~   58 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN   58 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCcee
Confidence            45789999999999999999999976654 345666665

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.32  E-value=0.00018  Score=62.45  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=25.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccc-cCCCCCe
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL-FFPASVV  340 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~-vs~iPGt  340 (355)
                      ...++|.++|.+|||||||||+|.+..... ..+..|.
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~   61 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV   61 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccce
Confidence            456889999999999999999999866432 3344454

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.32  E-value=0.00021  Score=61.87  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=24.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ...++|.++|.+|||||||||+|.+..
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCC
Confidence            456899999999999999999999866

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.31  E-value=0.00019  Score=73.25  Aligned_cols=47  Identities=21%  Similarity=0.323  Sum_probs=36.4

Q ss_pred             CCChHHHHHHHHHHHhhh------ccccceEEEEeecCCCChhHHHHHhhccC
Q 018454          284 SFGKGSLLSVLRQFARLK------SDKQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~~~------~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ..|+..+.+.+++.....      .....++|++||.||||||||||+|.+..
T Consensus        13 ~~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           13 KQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred             HhCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCC
Confidence            458888888888776521      23456899999999999999999999865

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.31  E-value=0.00023  Score=60.53  Aligned_cols=28  Identities=25%  Similarity=0.198  Sum_probs=24.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ...++|.|+|.+|||||||||+|.+...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~   43 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIF   43 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCC
Confidence            4578999999999999999999997643

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.31  E-value=0.00047  Score=70.95  Aligned_cols=59  Identities=19%  Similarity=0.302  Sum_probs=47.0

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp  257 (355)
                      ||| ..+..++...+.-+|.+|+||||.+.....-..+.+...+  .+.|.|+++||+|...
T Consensus       108 PGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSCC
T ss_pred             CCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecccchh
Confidence            444 3456678889999999999999998877666666666655  6899999999999753

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.30  E-value=0.00077  Score=71.34  Aligned_cols=54  Identities=19%  Similarity=0.078  Sum_probs=39.6

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp  257 (355)
                      +..++...+..+|.+|+|+|+.+........+.+.+..  .+.|+++|+||+|+..
T Consensus        95 f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           95 FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCCccc
Confidence            34556667888999999999998765443444444433  4789999999999865

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.30  E-value=0.00028  Score=60.40  Aligned_cols=37  Identities=19%  Similarity=0.182  Sum_probs=29.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc-ccCCCCCee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPASVVW  341 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iPGtT  341 (355)
                      ..++|.|+|.+|||||||||+|.+.... ...+..|++
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~   51 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVD   51 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceE
Confidence            4689999999999999999999986643 345555654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.29  E-value=0.0006  Score=62.35  Aligned_cols=95  Identities=11%  Similarity=-0.019  Sum_probs=60.8

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHH---HHHHHhh--cCCCcEEEEEecc-CCCChhhHHHHHHHHhh---
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHL---ERHLKEH--CKHKHMILLLNKC-DLVPAWATKGWLRVLSK---  270 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l---~~~L~~~--~~~k~vILVlNK~-DLvp~~~~~~w~~~l~~---  270 (355)
                      .+|+.   +.+++|.||+|||+.|..-... .++   ...+.++  ..+.|++|+.||. |+.......+..+.+.-   
T Consensus       117 plWr~---Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l  193 (227)
T 3l82_B          117 PQIQK---VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL  193 (227)
T ss_dssp             CCHHH---HHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG
T ss_pred             HHHHH---HhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC
Confidence            35555   6688999999999987632212 223   1222222  2567899999996 67432222333333321   


Q ss_pred             hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454          271 EYPSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       271 ~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      ..+..+..+||.+|.|+.+-+++|.+.+
T Consensus       194 ~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          194 NHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence            2467788899999999999999987544

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.28  E-value=0.0011  Score=66.00  Aligned_cols=93  Identities=25%  Similarity=0.287  Sum_probs=62.3

Q ss_pred             HhhhcCCCEEEEEecCC-CCCCCcchHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454          207 YKVIDSSDVVVQVLDAR-DPQGTRCHHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDar-dp~~s~~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+.++.+|.+|+|+|+. ++.... ..+.+.+...   ..++|.|+|+||+|+........+.+.+... ...++.+||.
T Consensus       230 l~~~era~~lL~vvDls~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~-g~~vi~iSA~  307 (416)
T 1udx_A          230 LRHIARTRVLLYVLDAADEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE-GLAVLPVSAL  307 (416)
T ss_dssp             HHHHTSSSEEEEEEETTSCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEECCTT
T ss_pred             HHHHHHHHhhhEEeCCccCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhc-CCeEEEEECC
Confidence            34578899999999996 332111 1112222111   1368999999999998764444455555432 3456788999


Q ss_pred             CCCChHHHHHHHHHHHhhh
Q 018454          283 KSFGKGSLLSVLRQFARLK  301 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~~~  301 (355)
                      ++.|+++|++.|.+.+...
T Consensus       308 ~g~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          308 TGAGLPALKEALHALVRST  326 (416)
T ss_dssp             TCTTHHHHHHHHHHHHHTS
T ss_pred             CccCHHHHHHHHHHHHHhc
Confidence            9999999999998887643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.28  E-value=0.00022  Score=62.09  Aligned_cols=38  Identities=24%  Similarity=0.164  Sum_probs=23.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc-cccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV-ILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-~~vs~iPGtT  341 (355)
                      ...++|.++|.+|||||||||+|.+... ..+.+.+|++
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~   64 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD   64 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccce
Confidence            4568999999999999999999998663 3455666654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.27  E-value=0.00018  Score=60.82  Aligned_cols=30  Identities=17%  Similarity=0.220  Sum_probs=25.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL  333 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~  333 (355)
                      ...++|.++|.+|||||||||+|.+.....
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~   39 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE   39 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTT
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence            456899999999999999999999876543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.26  E-value=0.00018  Score=63.00  Aligned_cols=28  Identities=14%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ...++|.|+|.+|||||||||+|.+...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~   50 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKF   50 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC---
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCC
Confidence            3568999999999999999999997654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.26  E-value=0.00033  Score=60.99  Aligned_cols=28  Identities=21%  Similarity=0.361  Sum_probs=24.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      ..+.|++||.+|||||||||.|.+....
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            3578999999999999999999987643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.26  E-value=0.00035  Score=61.70  Aligned_cols=27  Identities=15%  Similarity=0.319  Sum_probs=24.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ..++|+++|.+|||||||||+|.+...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~   51 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLF   51 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCC
Confidence            468999999999999999999997653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.25  E-value=0.00032  Score=58.94  Aligned_cols=38  Identities=18%  Similarity=0.145  Sum_probs=29.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccc-cCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL-FFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~-vs~iPGtT  341 (355)
                      ...++|.++|.+|||||||||+|.+..... ..+..|.+
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~   51 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE   51 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE
Confidence            356899999999999999999999876433 34445543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.25  E-value=0.00035  Score=60.05  Aligned_cols=37  Identities=16%  Similarity=0.227  Sum_probs=29.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc-ccCCCCCee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPASVVW  341 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iPGtT  341 (355)
                      ..++|+|+|.+|||||||||+|.+.... ...+..|++
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~   58 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID   58 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE
Confidence            4589999999999999999999987643 334555654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.21  E-value=0.00074  Score=58.78  Aligned_cols=91  Identities=14%  Similarity=0.041  Sum_probs=57.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      ....+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||..... .......+........+.+|++++.
T Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~  153 (199)
T 2f9l_A           74 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST  153 (199)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred             HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            4467899999999987643211 1222222221 24688999999999964321 1111223333344556778999999


Q ss_pred             ChHHHHHHHHHHHh
Q 018454          286 GKGSLLSVLRQFAR  299 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~  299 (355)
                      |++++++.|.+.+.
T Consensus       154 ~i~~l~~~l~~~~~  167 (199)
T 2f9l_A          154 NVEEAFKNILTEIY  167 (199)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999998876654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.21  E-value=7e-05  Score=74.82  Aligned_cols=46  Identities=24%  Similarity=0.074  Sum_probs=26.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF  350 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~  350 (355)
                      ....|+|+|.+|||||||+|+|.+.....+++.||+|.+.+...+.
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~   78 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSME   78 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEE
Confidence            4678999999999999999999999888889999998554443333

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.20  E-value=0.00025  Score=61.72  Aligned_cols=37  Identities=19%  Similarity=0.413  Sum_probs=30.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV  340 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt  340 (355)
                      .+.++|.++|.+|||||||||+|.........|..|.
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~   63 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF   63 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCce
Confidence            5679999999999999999999997766555554453

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.20  E-value=0.00036  Score=60.44  Aligned_cols=29  Identities=28%  Similarity=0.471  Sum_probs=25.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      ...++|.++|.+|||||||||+|.+....
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~   54 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFI   54 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            35689999999999999999999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.19  E-value=0.00026  Score=62.33  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=24.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ...++|.|+|.+|||||||||+|.+...
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~   50 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKF   50 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence            3468999999999999999999997653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=97.19  E-value=0.00026  Score=62.36  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=29.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc-cccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV-ILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-~~vs~iPGtT  341 (355)
                      ...++|+|+|.+|||||||||+|.+... ....+..|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~   47 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV   47 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence            3568999999999999999999996553 3345666765

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.17  E-value=0.001  Score=59.99  Aligned_cols=98  Identities=12%  Similarity=0.143  Sum_probs=51.7

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---hcCCCcEEEEEeccCCCChhhHHHHH-------HHHhh
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWL-------RVLSK  270 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~~~w~-------~~l~~  270 (355)
                      .+.+.+......+|++|+|+|+.+... .+..+...+.+   ....+|+++|+||+|++.......++       ..+.+
T Consensus       101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          101 EIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            344445556678899999999875433 33333333322   11346999999999998654333222       22222


Q ss_pred             hCCceEEEeeec-----CCCChHHHHHHHHHHHh
Q 018454          271 EYPSLAFHASIN-----KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       271 ~~p~~~f~vSa~-----~~~Gi~~Ll~~L~q~~~  299 (355)
                      .+....+.++..     +..|+.+|++.+.....
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~  213 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR  213 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence            222222333333     23577788887776664

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.13  E-value=0.00037  Score=61.68  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      .+.++|.++|.+|||||||||+|.+...
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~   59 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAF   59 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC---
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCC
Confidence            3568999999999999999999997654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.11  E-value=0.00077  Score=57.25  Aligned_cols=28  Identities=25%  Similarity=0.273  Sum_probs=24.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ...++|+|+|.+|||||||||+|.+...
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~   36 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKF   36 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3568999999999999999999997653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.10  E-value=0.00017  Score=63.53  Aligned_cols=77  Identities=12%  Similarity=0.056  Sum_probs=37.7

Q ss_pred             hcCCCEEEEEecCC-CCCCCc--chHHHHHHHh----hcCCCcEEEEEeccCCCChhhHHHHHHH-------HhhhCCce
Q 018454          210 IDSSDVVVQVLDAR-DPQGTR--CHHLERHLKE----HCKHKHMILLLNKCDLVPAWATKGWLRV-------LSKEYPSL  275 (355)
Q Consensus       210 i~~sDvVL~VvDar-dp~~s~--~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~~~~~w~~~-------l~~~~p~~  275 (355)
                      +..+|++|+|+|+. ++....  ...+...+..    ...+.|+++|+||+||.+......+.+.       +.......
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            45589999999998 543321  1222222221    1147899999999999875432222222       21112223


Q ss_pred             EEEeeecCCCC
Q 018454          276 AFHASINKSFG  286 (355)
Q Consensus       276 ~f~vSa~~~~G  286 (355)
                      .+.+|++++.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            45568777654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.09  E-value=0.00056  Score=73.08  Aligned_cols=60  Identities=20%  Similarity=0.231  Sum_probs=39.4

Q ss_pred             eecCCCChHHHHHHHHHHHhh---hc---cccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454          280 SINKSFGKGSLLSVLRQFARL---KS---DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV  339 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~---~~---~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG  339 (355)
                      ++..+.|+++|+..+.++...   ..   .-....|+|||.+|+|||||||+|++...+.++.-+-
T Consensus        19 ~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~   84 (772)
T 3zvr_A           19 SHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV   84 (772)
T ss_dssp             ------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCS
T ss_pred             cccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccc
Confidence            555677888887776654331   11   1234688999999999999999999988766665443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.09  E-value=0.00029  Score=60.77  Aligned_cols=30  Identities=20%  Similarity=0.217  Sum_probs=25.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL  333 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~  333 (355)
                      ...++|.|+|.+|||||||||+|.+.....
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~   48 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQP   48 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence            356899999999999999999999876543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.06  E-value=0.0014  Score=61.26  Aligned_cols=40  Identities=23%  Similarity=0.149  Sum_probs=29.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFY  345 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y  345 (355)
                      ...++|.++|.+|||||||||.|.....  ....++++.+.+
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~  192 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNY  192 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCccccee
Confidence            3568999999999999999999997653  233344443333

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.00038  Score=61.88  Aligned_cols=29  Identities=17%  Similarity=0.355  Sum_probs=25.1

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      ...++|.|+|.+|||||||||+|.+....
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~   39 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFN   39 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCC
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            34689999999999999999999987644

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.03  E-value=0.00039  Score=59.91  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=24.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ...++|.++|.+|||||||||+|.+..
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            356899999999999999999999764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.03  E-value=0.00058  Score=66.45  Aligned_cols=75  Identities=7%  Similarity=0.017  Sum_probs=37.5

Q ss_pred             CCEEEEEecC-CCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHH---hhhCCceEEEeeecCCCChH
Q 018454          213 SDVVVQVLDA-RDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL---SKEYPSLAFHASINKSFGKG  288 (355)
Q Consensus       213 sDvVL~VvDa-rdp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l---~~~~p~~~f~vSa~~~~Gi~  288 (355)
                      +|++|+++|. .+++...+..+.+.+   ..+.|+|+|+||+|+........+...+   ...+...+|.+|++++.| +
T Consensus       146 v~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~  221 (361)
T 2qag_A          146 VHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-D  221 (361)
T ss_dssp             CCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC--------
T ss_pred             eEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-c
Confidence            4578888875 444433332333333   3578999999999998765444332222   222344566779998887 4


Q ss_pred             HHH
Q 018454          289 SLL  291 (355)
Q Consensus       289 ~Ll  291 (355)
                      +.+
T Consensus       222 e~~  224 (361)
T 2qag_A          222 EDF  224 (361)
T ss_dssp             --C
T ss_pred             hhH
Confidence            433

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.03  E-value=0.00032  Score=60.57  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=28.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcc-ccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iPGtT  341 (355)
                      ...++|.|+|.+|||||||||+|.+.... ...+.+|++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~   59 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGID   59 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTT
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeE
Confidence            35689999999999999999999976532 233444544

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=97.01  E-value=8.4e-05  Score=64.82  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=24.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ...++|.|+|.+|||||||||+|.+...
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~   58 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTY   58 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3468999999999999999999997653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.01  E-value=0.00045  Score=60.99  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=27.5

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc-----CccccCCCCCe
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK-----NVILFFPASVV  340 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~-----~~~~vs~iPGt  340 (355)
                      ....|.|+|.+|||||||+|.|...     +++.+...||+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~   69 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS   69 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC
Confidence            4567899999999999999999864     34445555554

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.01  E-value=0.00032  Score=67.74  Aligned_cols=87  Identities=16%  Similarity=0.191  Sum_probs=54.1

Q ss_pred             HHhhh-cCCCEEEEEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-CC-----ceEE
Q 018454          206 LYKVI-DSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-YP-----SLAF  277 (355)
Q Consensus       206 l~kvi-~~sDvVL~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-~p-----~~~f  277 (355)
                      +..++ ..+|+||+|+|+.......+. .+.+.+..  .+.|+|+|+||+|+++....  +...+... ++     ..++
T Consensus       160 ~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~  235 (353)
T 2x2e_A          160 LMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVV  235 (353)
T ss_dssp             HHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECC
T ss_pred             HHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEE
Confidence            33444 455788888888765443332 23333332  47899999999999865321  11222221 11     2345


Q ss_pred             EeeecCCCChHHHHHHHHH
Q 018454          278 HASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      .+|++++.|+++|++.+.+
T Consensus       236 ~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          236 NRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             CCCHHHHHTTCCHHHHHHH
T ss_pred             eCCcccccccccHHHHHHH
Confidence            6799999999999988865

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.97  E-value=0.00058  Score=59.86  Aligned_cols=28  Identities=14%  Similarity=0.162  Sum_probs=24.5

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      ..++|+++|.+|||||||||+|.+....
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~   51 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFP   51 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            4578999999999999999999987644

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.97  E-value=0.0021  Score=61.36  Aligned_cols=96  Identities=10%  Similarity=-0.027  Sum_probs=63.2

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHH---HHHHhh--cCCCcEEEEEec-cCCCChhhHHHHHHHHhh--
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLE---RHLKEH--CKHKHMILLLNK-CDLVPAWATKGWLRVLSK--  270 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~---~~L~~~--~~~k~vILVlNK-~DLvp~~~~~~w~~~l~~--  270 (355)
                      +..|+.   +.+++|.||+|||+.|..--.. .++.   ..+.++  ..+.|++|+.|| -|+.......+..+.+.-  
T Consensus       201 RplWr~---Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~  277 (312)
T 3l2o_B          201 IPQIQK---VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL  277 (312)
T ss_dssp             CHHHHH---HHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGG
T ss_pred             HHHHHH---HhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCcc
Confidence            456666   6678999999999987643211 2222   333332  257899999997 577433223333333321  


Q ss_pred             -hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454          271 -EYPSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       271 -~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                       ..+..+..+||.+|.|+.+-+++|.+.+
T Consensus       278 l~r~W~Iq~csA~tGeGL~EGldWL~~~l  306 (312)
T 3l2o_B          278 LNHPWLVQDTEAETLTGFLNGIEWILEEV  306 (312)
T ss_dssp             GCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred             CCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence             1466788899999999999999998665

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=96.96  E-value=0.00054  Score=66.73  Aligned_cols=91  Identities=11%  Similarity=0.174  Sum_probs=58.0

Q ss_pred             hhhcCCCEEEEEecCCCCCC--------CcchHHHHHHHh-----hcCCCcEEEEEeccCCCCh----------------
Q 018454          208 KVIDSSDVVVQVLDARDPQG--------TRCHHLERHLKE-----HCKHKHMILLLNKCDLVPA----------------  258 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~--------s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~----------------  258 (355)
                      ...+.++.||+|+|+.+...        ........++..     ...+.|+|||+||+||...                
T Consensus       212 ~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g  291 (353)
T 1cip_A          212 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG  291 (353)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCS
T ss_pred             HHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCC
Confidence            36789999999999987532        112223333322     2357899999999998522                


Q ss_pred             ----hhHHHHHHH-Hhh------hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454          259 ----WATKGWLRV-LSK------EYPSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       259 ----~~~~~w~~~-l~~------~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                          .....|... +..      ......+.+||+++.|+.++++.+.+..
T Consensus       292 ~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i  342 (353)
T 1cip_A          292 SNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  342 (353)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence                122233321 111      2344566789999999999999887654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.95  E-value=0.00068  Score=59.34  Aligned_cols=28  Identities=25%  Similarity=0.411  Sum_probs=24.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ...++|.|+|.+|||||||||+|.+...
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~   54 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAF   54 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCC
Confidence            3468999999999999999999997653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.94  E-value=0.001  Score=58.94  Aligned_cols=29  Identities=17%  Similarity=0.221  Sum_probs=24.3

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      ...++|.|||.+|||||||||+|.+....
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~   53 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP   53 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            35689999999999999999999987643

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=96.91  E-value=0.00052  Score=71.81  Aligned_cols=58  Identities=21%  Similarity=0.312  Sum_probs=46.8

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      +|| ..+..++...+.-+|.+|+||||.+.....-..+.+...+  .+.|.|+++||+|..
T Consensus        75 PGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--~~lp~i~~INKmDr~  132 (638)
T 3j25_A           75 PGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--MGIPTIFFINKIDQN  132 (638)
T ss_dssp             CCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--HTCSCEECCEECCSS
T ss_pred             CCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCeEEEEeccccc
Confidence            454 3456678889999999999999998887766677776665  479999999999975

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.89  E-value=0.00034  Score=69.17  Aligned_cols=48  Identities=19%  Similarity=0.145  Sum_probs=31.9

Q ss_pred             CCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHH
Q 018454          243 HKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLL  291 (355)
Q Consensus       243 ~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll  291 (355)
                      .+|+|+|+||+|+........+.+.+... +..++.+||..+.|+.+|+
T Consensus       214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~-~~~vv~iSA~~e~~l~~L~  261 (397)
T 1wxq_A          214 NKPMVIAANKADAASDEQIKRLVREEEKR-GYIVIPTSAAAELTLRKAA  261 (397)
T ss_dssp             HSCEEEEEECGGGSCHHHHHHHHHHHHHT-TCEEEEECHHHHHHHHSCS
T ss_pred             CCCEEEEEeCccccchHHHHHHHHHHhhc-CCcEEEEeccchhhHHHHH
Confidence            49999999999987432233333333221 3457788999988877653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.88  E-value=0.0013  Score=57.97  Aligned_cols=28  Identities=14%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ...++|.+||.+|||||||||+|.+...
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~   53 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCF   53 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3568999999999999999999998654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.87  E-value=0.00039  Score=69.26  Aligned_cols=34  Identities=35%  Similarity=0.594  Sum_probs=28.0

Q ss_pred             eEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      -.|++||.||||||||||+|.+... .++..|.+|
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftT  191 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTT  191 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCc-cccCcccce
Confidence            4589999999999999999998653 566777766

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.86  E-value=0.0014  Score=56.59  Aligned_cols=29  Identities=28%  Similarity=0.455  Sum_probs=25.3

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      .+.++|.|+|.+|||||||||+|......
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~   46 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYV   46 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46789999999999999999999986643

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.83  E-value=0.002  Score=55.88  Aligned_cols=89  Identities=12%  Similarity=0.026  Sum_probs=56.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      ....+|.+++|+|..++..... ..+...+.. ...+.++++|+||+||.... ........+........+.+|++++.
T Consensus        98 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~  177 (191)
T 1oix_A           98 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDST  177 (191)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred             HhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            4567899999999876532111 112222222 12467899999999996421 11122233333344566778999999


Q ss_pred             ChHHHHHHHHHH
Q 018454          286 GKGSLLSVLRQF  297 (355)
Q Consensus       286 Gi~~Ll~~L~q~  297 (355)
                      |++++++.|.+.
T Consensus       178 ~v~~l~~~l~~~  189 (191)
T 1oix_A          178 NVEAAFQTILTE  189 (191)
T ss_dssp             THHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999988754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.83  E-value=0.00078  Score=59.21  Aligned_cols=28  Identities=32%  Similarity=0.382  Sum_probs=24.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      .....|.|+|.+|||||||||+|.+...
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~   37 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV   37 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4568899999999999999999998764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=95.84  E-value=0.00019  Score=62.60  Aligned_cols=27  Identities=33%  Similarity=0.385  Sum_probs=23.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+.++|+++|.+|||||||||+|....
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~   54 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNA   54 (204)
Confidence            457899999999999999999998654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.79  E-value=0.0013  Score=64.16  Aligned_cols=91  Identities=13%  Similarity=0.184  Sum_probs=56.0

Q ss_pred             hhhcCCCEEEEEecCCCCC--------CCcchHHHHHHHh-----hcCCCcEEEEEeccCCCCh----------------
Q 018454          208 KVIDSSDVVVQVLDARDPQ--------GTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPA----------------  258 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~--------~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~----------------  258 (355)
                      ...+.++.||+|+|+.+..        .........++..     ...+.|+|||+||+||...                
T Consensus       220 ~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g  299 (362)
T 1zcb_A          220 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEG  299 (362)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCS
T ss_pred             HHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccC
Confidence            4668999999999998742        1111222222222     2357899999999998521                


Q ss_pred             -----hhHHHHH-HHHhh------hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454          259 -----WATKGWL-RVLSK------EYPSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       259 -----~~~~~w~-~~l~~------~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                           .....|. ..+..      ..+...+.+||+++.|+.++++.+.+..
T Consensus       300 ~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          300 DPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  351 (362)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence                 1112222 11111      2234566789999999999998876554

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=96.77  E-value=0.0011  Score=66.13  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=23.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +..++|++||.+|+|||||+|+|+..
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~   40 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYL   40 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            45689999999999999999999764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.76  E-value=0.0025  Score=56.36  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=50.2

Q ss_pred             CCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHhhhC-CceEEEeeecCCCChHH
Q 018454          213 SDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEY-PSLAFHASINKSFGKGS  289 (355)
Q Consensus       213 sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~~-p~~~f~vSa~~~~Gi~~  289 (355)
                      .+.++.|+|+..+....... ...+     ++|.++|+||+|+.+..  ......+.+.... ...++.+|++++.|+++
T Consensus       140 ~~~~~~v~~~~~~~~~~~~~-~~~~-----~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  213 (226)
T 2hf9_A          140 THKRIVVISTTEGDDTIEKH-PGIM-----KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDK  213 (226)
T ss_dssp             CSEEEEEEEGGGCTTTTTTC-HHHH-----TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHH
T ss_pred             cCcEEEEEecCcchhhHhhh-hhHh-----hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHH
Confidence            45677888864432221111 1122     47899999999997542  2233333333322 24577889999999999


Q ss_pred             HHHHHHHHH
Q 018454          290 LLSVLRQFA  298 (355)
Q Consensus       290 Ll~~L~q~~  298 (355)
                      |++.|.+.+
T Consensus       214 l~~~l~~~~  222 (226)
T 2hf9_A          214 VLEFIEKSV  222 (226)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987655

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.74  E-value=0.0014  Score=57.04  Aligned_cols=28  Identities=14%  Similarity=0.170  Sum_probs=24.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      ..++|+++|.+|||||||||+|.+....
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~   51 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFP   51 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence            4578999999999999999999986643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.71  E-value=0.00062  Score=58.11  Aligned_cols=28  Identities=14%  Similarity=0.171  Sum_probs=23.9

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ...++|.+||.+|||||||||.|.+...
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3568999999999999999998887543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=96.69  E-value=0.0026  Score=61.53  Aligned_cols=86  Identities=15%  Similarity=0.059  Sum_probs=51.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhcCCCcEEEEEeccCCCChhh--------HHHHHHHHhhh----CC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWA--------TKGWLRVLSKE----YP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~~~k~vILVlNK~DLvp~~~--------~~~w~~~l~~~----~p  273 (355)
                      ....++.+|+|+|+.+........+.+++.   ...++.|+++|+||+||.+...        ..+-.+.+.+.    ..
T Consensus        69 yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~  148 (331)
T 3r7w_B           69 LFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQ  148 (331)
T ss_dssp             HHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCC
T ss_pred             hccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccC
Confidence            467899999999999872111123323232   2346789999999999987432        11112233332    23


Q ss_pred             ceEEEeeecCCCChHHHHHHHH
Q 018454          274 SLAFHASINKSFGKGSLLSVLR  295 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~  295 (355)
                      ...|..||++ .++.+.+..|.
T Consensus       149 i~f~eTSAkd-~nV~eAFs~iv  169 (331)
T 3r7w_B          149 VSFYLTSIFD-HSIYEAFSRIV  169 (331)
T ss_dssp             EEEECCCSSS-SHHHHHHHHHH
T ss_pred             ceEEEeccCC-CcHHHHHHHHH
Confidence            4456679986 46766665543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.65  E-value=0.0029  Score=60.88  Aligned_cols=85  Identities=13%  Similarity=0.033  Sum_probs=51.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC-hhhHHHHHHHHhh----hC------CceEE
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP-AWATKGWLRVLSK----EY------PSLAF  277 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~----~~------p~~~f  277 (355)
                      +.+.+|++++|+|+..+..  ...+...+.    ..+.++|+||+|+.+ ........+.+..    ..      ...++
T Consensus       165 v~~~~d~vl~v~d~~~~~~--~~~i~~~i~----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl  238 (337)
T 2qm8_A          165 VADLTDFFLVLMLPGAGDE--LQGIKKGIF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVV  238 (337)
T ss_dssp             HHTTSSEEEEEECSCC--------CCTTHH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEE
T ss_pred             HHhhCCEEEEEEcCCCccc--HHHHHHHHh----ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEE
Confidence            4578999999999853321  000111111    245688889999875 3222222233321    11      12456


Q ss_pred             EeeecCCCChHHHHHHHHHHHh
Q 018454          278 HASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      .+|+.++.|+++|++.|.++..
T Consensus       239 ~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          239 TISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            7899999999999999988764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=96.62  E-value=0.00064  Score=70.56  Aligned_cols=27  Identities=19%  Similarity=0.321  Sum_probs=23.5

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhcc
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..++|++||.+|+|||||+|+|+..
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~  200 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFE  200 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHH
Confidence            345688999999999999999999754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.0016  Score=55.90  Aligned_cols=61  Identities=16%  Similarity=0.157  Sum_probs=36.6

Q ss_pred             hhhcCCCEEEEEecCC-CCCCCcc--hHHHHHHHhh----cCCCcEEEEEeccCCCChhhHHHHHHHH
Q 018454          208 KVIDSSDVVVQVLDAR-DPQGTRC--HHLERHLKEH----CKHKHMILLLNKCDLVPAWATKGWLRVL  268 (355)
Q Consensus       208 kvi~~sDvVL~VvDar-dp~~s~~--~~l~~~L~~~----~~~k~vILVlNK~DLvp~~~~~~w~~~l  268 (355)
                      ..+..+|++|+|+|+. ++.....  ..+...+...    ..+.|+++|+||+|+.+........+.+
T Consensus       114 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            3456789999999998 4321110  1122222211    1478999999999998755444444443

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=96.55  E-value=0.0021  Score=61.49  Aligned_cols=33  Identities=21%  Similarity=0.509  Sum_probs=27.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCC
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFP  336 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~  336 (355)
                      .+.++|.|+|.+|||||||||+|.+.......|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~p  195 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP  195 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCccc
Confidence            356899999999999999999999877655444

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.53  E-value=0.0014  Score=56.82  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+.++|.++|.+|||||||||.|.+.
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhc
Confidence            46789999999999999999998875

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.49  E-value=0.0031  Score=60.56  Aligned_cols=82  Identities=15%  Similarity=0.099  Sum_probs=52.4

Q ss_pred             CCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHHhh----hc---cccceEEEEeecC
Q 018454          243 HKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL----KS---DKQAISVGFVGYP  315 (355)
Q Consensus       243 ~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~----~~---~~~~i~V~~vG~p  315 (355)
                      .....+|++|.|+.|+...+    ... ...+.++..+..+..++..|..+|......    |.   +-.+..|.|+|.+
T Consensus        79 ~~~P~IIltrg~~~peelie----~A~-~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~s  153 (314)
T 1ko7_A           79 PETPAIIVTRDLEPPEELIE----AAK-EHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDS  153 (314)
T ss_dssp             TTCCCEEECTTCCCCHHHHH----HHH-HTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEEST
T ss_pred             CCCCEEEEeCCCCCCHHHHH----HHH-HCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCC
Confidence            46678889999998765332    222 234445555555555555555555443211    11   1235678999999


Q ss_pred             CCChhHHHHHhhcc
Q 018454          316 NVGKSSVINTLRTK  329 (355)
Q Consensus       316 NVGKSSLIN~Ll~~  329 (355)
                      |+||||+.+.|++.
T Consensus       154 G~GKSt~a~~l~~~  167 (314)
T 1ko7_A          154 GIGKSETALELIKR  167 (314)
T ss_dssp             TSSHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999874

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.49  E-value=0.0025  Score=65.55  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=41.9

Q ss_pred             HHHHhhhcCCCEEEEEecCCCC-CCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHH
Q 018454          204 GELYKVIDSSDVVVQVLDARDP-QGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL  268 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp-~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l  268 (355)
                      ..+...+..+|+||+|+|+.++ .......+.+.+..  .+.++++|+||+|+++..........+
T Consensus       180 ~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~pvilVlNK~Dl~~~~el~~~~~~l  243 (550)
T 2qpt_A          180 AVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HEDKIRVVLNKADMVETQQLMRVYGAL  243 (550)
T ss_dssp             HHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCCCEEEEEECCCccCHHHHHHHHHHh
Confidence            3345567889999999999875 23223333334432  357899999999999876554444433

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.48  E-value=0.0056  Score=64.68  Aligned_cols=58  Identities=17%  Similarity=0.101  Sum_probs=46.9

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      +|| ..+..++...+.-+|.+|+||||.......-..+.+....  .+.|.|+++||+|..
T Consensus        93 PGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           93 PGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--HTCCEEEEEECSSST
T ss_pred             CCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEcccccc
Confidence            555 3466788889999999999999998877666666666655  489999999999974

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.00074  Score=70.35  Aligned_cols=28  Identities=21%  Similarity=0.247  Sum_probs=24.7

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhccC
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+..++|++||.+|||||||||+|+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~  191 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDL  191 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhc
Confidence            3567999999999999999999998653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.47  E-value=0.0017  Score=57.43  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=22.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ....|.++|.+|||||||+|.|...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4578899999999999999999864

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.45  E-value=0.0019  Score=62.72  Aligned_cols=31  Identities=26%  Similarity=0.284  Sum_probs=23.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFF  335 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs  335 (355)
                      ..++|++||.+|||||||||+|.+.......
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~   66 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPER   66 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC----
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence            4578999999999999999999876555443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.44  E-value=0.0023  Score=61.73  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=23.6

Q ss_pred             EEEEeecCCCChhHHHHHhhccCcccc
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKNVILF  334 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~~~~v  334 (355)
                      .|+|||.+|||||||||+|.+......
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~lp~   62 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDFLPR   62 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCCSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCC
Confidence            789999999999999999999765433

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=96.44  E-value=0.0019  Score=59.19  Aligned_cols=26  Identities=23%  Similarity=0.442  Sum_probs=23.6

Q ss_pred             ccceEEEEeecC---------CCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYP---------NVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~p---------NVGKSSLIN~Ll~~  329 (355)
                      ...++|.+||.|         |||||||||+|.+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~   51 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP   51 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence            456899999999         99999999999974

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.42  E-value=0.0012  Score=63.78  Aligned_cols=88  Identities=9%  Similarity=0.029  Sum_probs=51.4

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhh---hCCceE
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSK---EYPSLA  276 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~---~~p~~~  276 (355)
                      .+...+..++..+|+||+|+|+.+..... ..+..++... ..++++|+|+||+|+++....  +.+.+..   ....-.
T Consensus       161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~  237 (360)
T 3t34_A          161 DIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTKIDLMDKGTD--AVEILEGRSFKLKYPW  237 (360)
T ss_dssp             HHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC--SHHHHTTSSSCCSSCC
T ss_pred             HHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeCCccCCCccc--HHHHHcCccccccCCe
Confidence            34455667789999999999875433221 2333333331 246899999999999875321  2222221   122234


Q ss_pred             EEeeecCCCChHHHH
Q 018454          277 FHASINKSFGKGSLL  291 (355)
Q Consensus       277 f~vSa~~~~Gi~~Ll  291 (355)
                      +.+|+.++.++++++
T Consensus       238 ~~v~~~s~~~i~~~~  252 (360)
T 3t34_A          238 VGVVNRSQADINKNV  252 (360)
T ss_dssp             EEECCCCHHHHHTTC
T ss_pred             EEEEECChHHhccCC
Confidence            556777776665543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.42  E-value=0.003  Score=55.87  Aligned_cols=42  Identities=21%  Similarity=0.223  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+|++.|.+..... ...+..|+++|.+|+|||||++.|.+.
T Consensus         4 ~~~~~~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A            4 LAALCQGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             HHHHHHHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345666555444322 345778899999999999999999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.37  E-value=0.0067  Score=57.32  Aligned_cols=99  Identities=9%  Similarity=0.029  Sum_probs=49.0

Q ss_pred             hcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH---HHHHHhhhCCceEEEeeecCCCC
Q 018454          210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG---WLRVLSKEYPSLAFHASINKSFG  286 (355)
Q Consensus       210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~---w~~~l~~~~p~~~f~vSa~~~~G  286 (355)
                      +..++++|++++....  +.++.-..++.......++++|+||+|+........   -...+...+...+|.+|++++ |
T Consensus       124 ~ara~~ll~ldePt~~--~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~  200 (301)
T 2qnr_A          124 DNRVHCCFYFISPFGH--GLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-D  200 (301)
T ss_dssp             CCCCCEEEEEECSSSS--SCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC------
T ss_pred             hhhhhheeeeecCccc--CCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-c
Confidence            3445667777653211  122222244444334578999999999987543221   112222233455677899999 9


Q ss_pred             hHHHHHHHHHHHhhhccccceEEEEeecCC
Q 018454          287 KGSLLSVLRQFARLKSDKQAISVGFVGYPN  316 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pN  316 (355)
                      +++++..+.+.+.     ..+..++||-..
T Consensus       201 v~e~f~~l~~~i~-----~~~p~avigs~~  225 (301)
T 2qnr_A          201 EDEDFKEQTRLLK-----ASIPFSVVGSNQ  225 (301)
T ss_dssp             ----CHHHHHHHH-----TTCSEECCCCCC
T ss_pred             ccHHHHHHHHHhh-----cCCCceEECCCc
Confidence            9998887766553     234457777543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.33  E-value=0.0016  Score=58.47  Aligned_cols=26  Identities=27%  Similarity=0.454  Sum_probs=22.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++..|+|+|.+|||||||+|.|++..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            34567899999999999999999754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=96.32  E-value=0.0035  Score=60.99  Aligned_cols=91  Identities=9%  Similarity=0.100  Sum_probs=54.3

Q ss_pred             hhhcCCCEEEEEecCCC--------CCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChh---------------
Q 018454          208 KVIDSSDVVVQVLDARD--------PQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAW---------------  259 (355)
Q Consensus       208 kvi~~sDvVL~VvDard--------p~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~---------------  259 (355)
                      .....++.+|+|+|..+        ........+..++..     ...+.|+|||+||+||....               
T Consensus       202 ~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y  281 (354)
T 2xtz_A          202 HLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDY  281 (354)
T ss_dssp             GGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTC
T ss_pred             HHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhccccccccccccccc
Confidence            35688999999999862        111222233333322     13578999999999984211               


Q ss_pred             -----------hHHHH-HHHHhh-----------hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454          260 -----------ATKGW-LRVLSK-----------EYPSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       260 -----------~~~~w-~~~l~~-----------~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                                 ....| ...+..           ......+.+||+++.|+.++++.+.+..
T Consensus       282 ~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I  343 (354)
T 2xtz_A          282 QPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETL  343 (354)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHH
Confidence                       11122 111111           1122346789999999999998876544

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.30  E-value=0.0013  Score=65.38  Aligned_cols=28  Identities=25%  Similarity=0.300  Sum_probs=24.2

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhccC
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+..++|+++|.+|+|||||+|+|+...
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~   48 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDS   48 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhc
Confidence            3456899999999999999999998653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=96.28  E-value=0.0012  Score=66.41  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +..++|++||.+|+|||||+|+|+..
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            56799999999999999999999864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.27  E-value=0.0021  Score=61.84  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=28.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhh------ccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLR------TKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll------~~~~~~vs~iPGtT  341 (355)
                      .....|+++|.||+|||||+|.|.      +.++..++..|++|
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~   97 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP   97 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence            456788999999999999999996      34556666667665

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.26  E-value=0.0036  Score=62.31  Aligned_cols=85  Identities=8%  Similarity=0.092  Sum_probs=37.3

Q ss_pred             CCCEEEEEecCC-CCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHh---hhCCceEEEeeecCCCCh
Q 018454          212 SSDVVVQVLDAR-DPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLS---KEYPSLAFHASINKSFGK  287 (355)
Q Consensus       212 ~sDvVL~VvDar-dp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~---~~~p~~~f~vSa~~~~Gi  287 (355)
                      .+++||++++.. ..+...+..+.+.+.   .+.++|+|+||+|++.......+...+.   ..+...+|..|+.++.++
T Consensus       138 ~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v  214 (418)
T 2qag_C          138 RVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEE  214 (418)
T ss_dssp             -CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-------
T ss_pred             CeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCH
Confidence            356677777654 333333323333333   4789999999999997654433322221   122344566788888888


Q ss_pred             HHHHHHHHHHHh
Q 018454          288 GSLLSVLRQFAR  299 (355)
Q Consensus       288 ~~Ll~~L~q~~~  299 (355)
                      ++++..|.+..+
T Consensus       215 ~~~~~~l~~~iP  226 (418)
T 2qag_C          215 NKLVKKIKDRLP  226 (418)
T ss_dssp             ----------CC
T ss_pred             HHHHHHHHhhCC
Confidence            887777765443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.23  E-value=0.005  Score=61.22  Aligned_cols=25  Identities=44%  Similarity=0.554  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ....|+|+|.+|+|||||||+|.+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC
Confidence            4567899999999999999999984

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.13  E-value=0.0021  Score=61.89  Aligned_cols=25  Identities=48%  Similarity=0.791  Sum_probs=22.1

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ..+..|+++|.||+|||||+|.|.+
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567789999999999999999984

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.10  E-value=0.0034  Score=63.06  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.-|+|+|.+|+|||||+|.|++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            4456789999999999999999964

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=96.05  E-value=0.0052  Score=55.31  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=22.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +..+|.|||-+||||||||+.+....
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~   37 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDS   37 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCC
Confidence            45789999999999999999998765

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=96.01  E-value=0.01  Score=57.53  Aligned_cols=56  Identities=18%  Similarity=0.166  Sum_probs=34.7

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCC--------CCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDP--------QGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp--------~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp  257 (355)
                      ...........++.||+|+|..+.        ....-.+...++..     ...+.|+|||+||+||..
T Consensus       174 ~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          174 ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred             ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence            333334577999999999999732        11111222222221     235789999999999854

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.99  E-value=0.0065  Score=58.59  Aligned_cols=38  Identities=32%  Similarity=0.412  Sum_probs=25.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc------cCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT------KNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~------~~~~~vs~iPGtT  341 (355)
                      .....|+|+|.||||||||+|.|..      .++..+...|+.+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~  120 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST  120 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence            3567899999999999999999963      3444444444443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.95  E-value=0.0076  Score=60.20  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=21.1

Q ss_pred             EEEEeecCCCChhHHHHHhhccC
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .++|||.+|+|||||||+|.+..
T Consensus        44 ~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           44 NILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             EEEEECSTTSSSHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            38999999999999999999874

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.90  E-value=0.0087  Score=59.27  Aligned_cols=91  Identities=13%  Similarity=0.145  Sum_probs=55.5

Q ss_pred             hhhcCCCEEEEEecCCCCC--------CCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhh--------------
Q 018454          208 KVIDSSDVVVQVLDARDPQ--------GTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWA--------------  260 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~--------~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~--------------  260 (355)
                      .....++.||+|+|..+..        ......+..++..     ...+.|+|||+||+||.....              
T Consensus       236 ~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y  315 (402)
T 1azs_C          236 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEF  315 (402)
T ss_dssp             GGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGG
T ss_pred             hhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccc
Confidence            4668999999999998721        1112233333332     135689999999999843211              


Q ss_pred             ---------------------HHHHH-HHHhhh--------CCceEEEeeecCCCChHHHHHHHHHHH
Q 018454          261 ---------------------TKGWL-RVLSKE--------YPSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       261 ---------------------~~~w~-~~l~~~--------~p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                                           ...|. ..+...        .....+.+||+++.|+..+++.+.+..
T Consensus       316 ~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I  383 (402)
T 1azs_C          316 ARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDII  383 (402)
T ss_dssp             GTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHH
Confidence                                 11121 111111        233455789999999999998876554

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.83  E-value=0.0041  Score=58.80  Aligned_cols=25  Identities=32%  Similarity=0.433  Sum_probs=21.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      -..+|++||.+|||||||||.|.+.
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCC
Confidence            3578899999999999999999875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.77  E-value=0.0074  Score=60.04  Aligned_cols=27  Identities=30%  Similarity=0.450  Sum_probs=23.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      -..+|+|||.+|||||||||.|.+...
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence            346789999999999999999998664

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=95.73  E-value=0.0047  Score=62.37  Aligned_cols=39  Identities=15%  Similarity=0.124  Sum_probs=23.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC------ccccCCCCCeeEE
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN------VILFFPASVVWYW  343 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~------~~~vs~iPGtT~~  343 (355)
                      +.+.|+++|.+|+|||||+|+|.+..      .......+|+|.+
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~   62 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID   62 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC-------------------
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEe
Confidence            46899999999999999999999765      1334556777743

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=95.71  E-value=0.012  Score=56.65  Aligned_cols=92  Identities=9%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             HhhhcCCCEEEEEecCC-------CCCC-CcchHHHHHHHh-----hcCCCcEEEEEeccCCCChh--------------
Q 018454          207 YKVIDSSDVVVQVLDAR-------DPQG-TRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAW--------------  259 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDar-------dp~~-s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~--------------  259 (355)
                      ......++.||+|+|..       +... .+-.+...++..     ...+.|+||++||+||....              
T Consensus       185 ~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~  264 (327)
T 3ohm_A          185 IHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYD  264 (327)
T ss_dssp             GGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCC
T ss_pred             HHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhcc
Confidence            34678999999999775       2211 111222223322     22578999999999985422              


Q ss_pred             ----hHHHHHHH----Hhh-----hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454          260 ----ATKGWLRV----LSK-----EYPSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       260 ----~~~~w~~~----l~~-----~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                          ..+.-.++    +..     ..+...+..||+++.++..+++.+.+..
T Consensus       265 g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I  316 (327)
T 3ohm_A          265 GPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  316 (327)
T ss_dssp             SCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence                11122222    211     1234456679999999999999887654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=95.70  E-value=0.0078  Score=64.89  Aligned_cols=50  Identities=16%  Similarity=0.219  Sum_probs=37.8

Q ss_pred             HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      ++...+..+|.+|+|+|+.++.......+...+..  .+.|+|+|+||+|+.
T Consensus       114 ~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          114 EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA  163 (842)
T ss_dssp             HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred             HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence            45567788999999999998765544444333333  579999999999986

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.38  E-value=0.031  Score=51.34  Aligned_cols=49  Identities=12%  Similarity=0.119  Sum_probs=31.5

Q ss_pred             cCCCEEEEEecCCCCCCC-cchHHHHHHHhhcC-C--CcEEEEEeccCCCChh
Q 018454          211 DSSDVVVQVLDARDPQGT-RCHHLERHLKEHCK-H--KHMILLLNKCDLVPAW  259 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s-~~~~l~~~L~~~~~-~--k~vILVlNK~DLvp~~  259 (355)
                      ..+|++|+|+|+.....+ .+..+.+.+..... +  +|+|+|+||+|+.+..
T Consensus       118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            478999999877542211 22344444543211 1  6999999999998754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.30  E-value=0.016  Score=49.60  Aligned_cols=43  Identities=23%  Similarity=0.355  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ....++.+.+++.......+-.++++|.||+|||||+++|.+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4456666666665433344567899999999999999998764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.24  E-value=0.024  Score=49.77  Aligned_cols=40  Identities=18%  Similarity=0.257  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       289 ~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ++++.|.+.........+..|+++|.+|+||||+++.|.+
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A            5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3444444333322234567889999999999999999875

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=95.02  E-value=0.011  Score=58.03  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=23.1

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      +..++|+++|.+|+|||||+|+|.+
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~   33 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTY   33 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHh
Confidence            4568999999999999999999987

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.91  E-value=0.017  Score=52.18  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=29.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhh-----ccCccccCCCCCe
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLR-----TKNVILFFPASVV  340 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll-----~~~~~~vs~iPGt  340 (355)
                      .+...+.++|.+||||||++|.|.     +.+++.+..-|+.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~   53 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGV   53 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSC
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            345667899999999999999998     7777777666653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=94.55  E-value=0.027  Score=57.28  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=25.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhh------ccCccccCC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLR------TKNVILFFP  336 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll------~~~~~~vs~  336 (355)
                      ++..|+|+|.|||||||++|.|.      +.+++.++.
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~  137 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA  137 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence            45678999999999999999998      666655544

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.41  E-value=0.044  Score=51.55  Aligned_cols=26  Identities=23%  Similarity=0.186  Sum_probs=22.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+..|+++|.+|+|||||.+.|.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45778999999999999999988753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.35  E-value=0.019  Score=50.40  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=21.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..|+|+|.||+|||||++.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3456789999999999999999764

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=94.32  E-value=0.024  Score=61.16  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=25.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV  340 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt  340 (355)
                      ...+|++||.+|+|||||+|+|+.......+..+|.
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~   53 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGE   53 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCC
Confidence            457899999999999999999997654444444443

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.25  E-value=0.023  Score=50.02  Aligned_cols=25  Identities=36%  Similarity=0.465  Sum_probs=21.5

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.++++|.+|+|||||+|.|.+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3456799999999999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.25  E-value=0.02  Score=51.15  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++|+|.+|+|||||++.|.+..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4457999999999999999998753

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=94.23  E-value=0.021  Score=58.36  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhh
Q 018454          305 QAISVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      +..+|++||.+|||||||+|+|+
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHH
Confidence            35689999999999999999997

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.19  E-value=0.044  Score=51.64  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=22.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+..|+++|.+|+|||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.94  E-value=0.028  Score=50.65  Aligned_cols=26  Identities=27%  Similarity=0.211  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+..
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            45567899999999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=93.91  E-value=0.053  Score=51.99  Aligned_cols=41  Identities=27%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       289 ~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .|.....++........+.-||++|.+|+|||||++.|.+.
T Consensus        75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34444445554333455678999999999999999998653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=93.70  E-value=0.022  Score=57.03  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=22.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      +..+.|+++|.+|+|||||+|+|+.
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHH
Confidence            4568999999999999999999975

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=93.67  E-value=0.035  Score=48.50  Aligned_cols=25  Identities=16%  Similarity=0.302  Sum_probs=21.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..|+++|.+|+|||||++.|.+.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4556899999999999999999753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=93.62  E-value=0.22  Score=48.46  Aligned_cols=21  Identities=14%  Similarity=0.200  Sum_probs=17.1

Q ss_pred             HHHHhhhcCCCEEEEEecCCC
Q 018454          204 GELYKVIDSSDVVVQVLDARD  224 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDard  224 (355)
                      ++.+..+..+|+|++|+|+.+
T Consensus        91 ~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           91 NQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             HHHHHHHHTCSEEEEEEECCC
T ss_pred             HHHHHHHHhCCEEEEEEECCC
Confidence            445567889999999999985

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=93.54  E-value=0.029  Score=54.66  Aligned_cols=20  Identities=25%  Similarity=0.503  Sum_probs=19.5

Q ss_pred             EEEEeecCCCChhHHHHHhh
Q 018454          308 SVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      .|+++|.+|+|||||+|+|+
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~   42 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG   42 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999999998

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=93.42  E-value=0.041  Score=47.03  Aligned_cols=21  Identities=24%  Similarity=0.262  Sum_probs=18.0

Q ss_pred             ceEEEEeecCCCChhHHHHHh
Q 018454          306 AISVGFVGYPNVGKSSVINTL  326 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~L  326 (355)
                      +--++++|.+|+|||||++.+
T Consensus         9 gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            445799999999999999953

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=93.36  E-value=0.038  Score=56.46  Aligned_cols=25  Identities=12%  Similarity=0.323  Sum_probs=22.5

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +..+|+++|.+|+|||||+|+|+..
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~   36 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLF   36 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhh
Confidence            4578999999999999999999863

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.23  E-value=0.048  Score=47.56  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=21.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..|+++|.+|+|||||.+.|.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999998764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.19  E-value=0.043  Score=52.25  Aligned_cols=26  Identities=35%  Similarity=0.510  Sum_probs=22.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .++-.++|+|.+|+|||||++.|.+-
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            34567899999999999999999863

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=93.17  E-value=0.035  Score=49.54  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=16.5

Q ss_pred             cceEEEEeecCCCChhHHHHHhh-cc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLR-TK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll-~~  329 (355)
                      .+-.++|+|.+|+|||||++.|. +.
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            34567999999999999999999 64

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.15  E-value=0.06  Score=49.07  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34467999999999999999998853

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=93.09  E-value=0.095  Score=43.65  Aligned_cols=41  Identities=20%  Similarity=0.366  Sum_probs=29.2

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.++.++.+.+.+..   .....+.|+|.||+|||++++++...
T Consensus        26 g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           26 GRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCHHHHHHHHHHHTS---SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhc---CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            555555555555432   33456789999999999999998764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=93.08  E-value=0.13  Score=46.86  Aligned_cols=48  Identities=13%  Similarity=0.095  Sum_probs=31.1

Q ss_pred             cCCCEEEEEecCCCCCCC-cchHHHHHHHhhcC---CCcEEEEEeccCCCCh
Q 018454          211 DSSDVVVQVLDARDPQGT-RCHHLERHLKEHCK---HKHMILLLNKCDLVPA  258 (355)
Q Consensus       211 ~~sDvVL~VvDardp~~s-~~~~l~~~L~~~~~---~k~vILVlNK~DLvp~  258 (355)
                      ..+|++|+|+|+..+..+ .+..+.+.+.....   .+|+++|+||+|+.+.
T Consensus       115 ~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          115 RTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             CEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             CCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence            478999999877554322 22345555554211   2589999999999753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=92.99  E-value=0.046  Score=49.67  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            4457999999999999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=92.94  E-value=0.047  Score=49.21  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=21.4

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456999999999999999998753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=92.88  E-value=0.046  Score=47.51  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=20.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ...|+|+|.||+||||+.+.|.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=92.79  E-value=0.065  Score=46.73  Aligned_cols=25  Identities=24%  Similarity=0.543  Sum_probs=22.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..|+++|.||+||||+.+.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4567899999999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.77  E-value=0.055  Score=48.79  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=20.3

Q ss_pred             ceEEEEeecCCCChhHHHHHhh
Q 018454          306 AISVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      +..|+|+|.||+|||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999999998

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=92.75  E-value=0.059  Score=49.01  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4457999999999999999998854

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=92.74  E-value=0.058  Score=51.30  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=23.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+..|+++|.+|+|||||++.|.+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            45678899999999999999999874

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=92.60  E-value=0.064  Score=49.61  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.++++|.+|+|||||++.|.+.
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHh
Confidence            4557899999999999999999874

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=92.48  E-value=0.047  Score=48.81  Aligned_cols=31  Identities=13%  Similarity=-0.019  Sum_probs=24.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccCccccCCC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKNVILFFPA  337 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~i  337 (355)
                      +-.++++|.+|+|||||++.|.+. ....+.+
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I   52 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV   52 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence            345799999999999999999987 5544444

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=92.43  E-value=0.052  Score=49.64  Aligned_cols=24  Identities=17%  Similarity=0.130  Sum_probs=20.9

Q ss_pred             eEEEEeecCCCChhHHHHHhhccC
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      -.++++|.+|+|||||++.|.+-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            346999999999999999998853

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=92.33  E-value=0.077  Score=45.44  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=21.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .++..|+|+|.||+||||+.+.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3567789999999999999999864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=92.32  E-value=0.066  Score=49.69  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            4457999999999999999999853

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=92.30  E-value=0.061  Score=49.46  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=21.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+-.
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34457999999999999999998753

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=92.28  E-value=0.062  Score=49.23  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4457999999999999999998853

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=92.23  E-value=0.077  Score=47.90  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..|+++|.+|+|||||++.|.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999763

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=92.23  E-value=0.075  Score=49.06  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=22.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+-.
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            34467999999999999999999853

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=92.23  E-value=0.057  Score=48.58  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=21.3

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3346899999999999999998853

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=92.18  E-value=0.067  Score=49.42  Aligned_cols=25  Identities=16%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4456999999999999999998853

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=92.16  E-value=0.2  Score=46.80  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=22.3

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+.-|.++|.||+||||+.+.|...
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34677899999999999999999753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=92.09  E-value=0.079  Score=46.12  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=20.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +..|+++|.||+||||+...|.+.
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            456899999999999999999753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=92.08  E-value=0.068  Score=48.28  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4457999999999999999999854

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=91.97  E-value=0.092  Score=45.54  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ..+..|+|+|.|++||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=91.97  E-value=0.078  Score=49.55  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCC
Confidence            4456999999999999999998853

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=91.96  E-value=0.13  Score=49.26  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=22.5

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .++-.++++|.+|+||||+++.|.+.
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45677899999999999999999863

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=91.96  E-value=0.081  Score=48.42  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=21.1

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.++++|.+|+|||||++.|.+-
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345799999999999999999985

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=91.94  E-value=0.074  Score=49.32  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=21.5

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            3456999999999999999998853

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=91.90  E-value=0.085  Score=49.01  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4457999999999999999998853

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=91.89  E-value=0.083  Score=48.56  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4457999999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=91.87  E-value=0.088  Score=48.78  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.++++|.+|+|||||++.|.+-
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            445799999999999999999985

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.85  E-value=0.071  Score=51.29  Aligned_cols=29  Identities=28%  Similarity=0.261  Sum_probs=24.0

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccCcccc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKNVILF  334 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v  334 (355)
                      +-.++++|.+|+|||||++.|.+...+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            45789999999999999999998654443

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.83  E-value=0.076  Score=48.34  Aligned_cols=25  Identities=16%  Similarity=0.296  Sum_probs=21.5

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3457999999999999999998853

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.78  E-value=0.08  Score=48.89  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            4457999999999999999998853

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=91.74  E-value=0.096  Score=45.78  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=21.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.++++|.+|+|||||++.|.+.
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4556799999999999999999874

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=91.72  E-value=0.18  Score=46.42  Aligned_cols=25  Identities=24%  Similarity=0.519  Sum_probs=20.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .....+.|.|.||+|||++..+|..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4456789999999999999986654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=91.71  E-value=0.056  Score=51.41  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.+++||.+|+|||||++.|.+--
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            34567999999999999999998853

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=91.71  E-value=0.093  Score=48.53  Aligned_cols=25  Identities=16%  Similarity=0.183  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4457999999999999999998753

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=91.69  E-value=0.13  Score=47.57  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             EEEeecCCCChhHHHHHhhcc
Q 018454          309 VGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ++++|.||+|||||+++|.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999999874

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=91.68  E-value=0.1  Score=44.55  Aligned_cols=26  Identities=23%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|..|+|||||++.|.+.-
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45567999999999999999998754

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=91.66  E-value=0.16  Score=45.68  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             EEEeecCCCChhHHHHHhhcc
Q 018454          309 VGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ++++|.||+|||||+++|.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=91.63  E-value=0.17  Score=47.85  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.+++||.+|+||||+++.|.+.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4556899999999999999999763

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=91.57  E-value=0.071  Score=52.24  Aligned_cols=54  Identities=15%  Similarity=0.209  Sum_probs=38.5

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---hcCCCcEEEEEeccCC
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDL  255 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~~~~k~vILVlNK~DL  255 (355)
                      ...+++...+.++|+|++|+|+.+|... ...+...|..   ....+|.++++||+|.
T Consensus       138 ~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          138 GRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             HHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence            3557788889999999999999987532 2233333332   1235789999999995

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=91.56  E-value=0.19  Score=43.39  Aligned_cols=42  Identities=12%  Similarity=0.154  Sum_probs=29.4

Q ss_pred             hHHHHHHHHHHHhhhccc-cceEEEEeecCCCChhHHHHHhhc
Q 018454          287 KGSLLSVLRQFARLKSDK-QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~~~-~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ...+++.+.+++...... .+..+++.|.||+|||+|+.+|..
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH
Confidence            344666666666533221 126789999999999999998875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=91.42  E-value=0.088  Score=48.43  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3457999999999999999999854

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=91.38  E-value=0.088  Score=49.20  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4457999999999999999998853

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=91.38  E-value=0.21  Score=45.28  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=22.3

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+..|.++|.||+||||+.+.|...
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            45677899999999999999998753

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=91.36  E-value=0.093  Score=55.25  Aligned_cols=24  Identities=13%  Similarity=0.268  Sum_probs=21.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ...+|+++|.+|+|||||+|+|+.
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~   34 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILY   34 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999984

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=91.29  E-value=0.099  Score=43.97  Aligned_cols=24  Identities=17%  Similarity=0.188  Sum_probs=21.0

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.++++|.+|+|||||+++|.+.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            446799999999999999999874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=91.29  E-value=0.097  Score=50.04  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=21.3

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.++++|.+|+|||||+|+|.+.
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346799999999999999999975

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=91.27  E-value=0.089  Score=50.86  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=21.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.++++|.+|+|||||+|+|.+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3456799999999999999999874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=91.26  E-value=0.11  Score=46.47  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=22.9

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+.-|+|+|..|+||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45677899999999999999999875

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=91.19  E-value=0.17  Score=56.55  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=23.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +..++|+++|.+|+|||||+|+|.+.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~  319 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTV  319 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence            45689999999999999999999863

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=91.18  E-value=0.16  Score=50.56  Aligned_cols=53  Identities=8%  Similarity=0.065  Sum_probs=36.8

Q ss_pred             EEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh
Q 018454          215 VVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK  270 (355)
Q Consensus       215 vVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~  270 (355)
                      +|++|+|+..++...+..+.+.|.   .+.++|+|+||+|.++..........+..
T Consensus       151 ~v~fI~d~~~~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~  203 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLDLVTMKKLD---SKVNIIPIIAKADAISKSELTKFKIKITS  203 (427)
T ss_dssp             EEEEECCCC---CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHHh---hCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence            578899998877766655555553   57899999999999987766555555543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=91.16  E-value=0.1  Score=44.29  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             ceEEEEeecCCCChhHHHHHhhc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ...|.++|.||+||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34578999999999999999974

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=91.06  E-value=0.1  Score=50.98  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCC
Confidence            4456999999999999999998854

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=91.05  E-value=0.12  Score=47.13  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhh
Q 018454          305 QAISVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      .+..|+++|.+|+|||||.+.|.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45678999999999999999998

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=90.92  E-value=0.074  Score=55.15  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=20.4

Q ss_pred             EEEeecCCCChhHHHHHhhccC
Q 018454          309 VGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      |++||.+|+|||||+|+|.+..
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC
T ss_pred             EEEECCCCChHHHHHHHHhCCC
Confidence            7999999999999999999863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=90.91  E-value=0.12  Score=50.19  Aligned_cols=24  Identities=21%  Similarity=0.212  Sum_probs=21.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+-.++++|.+|+||||++++|.+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            445689999999999999999986

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=90.90  E-value=0.19  Score=41.80  Aligned_cols=41  Identities=22%  Similarity=0.349  Sum_probs=28.8

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.+..+..+.+.+..   .....+.|+|.||+|||+|+..+...
T Consensus        26 g~~~~~~~l~~~l~~---~~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           26 GRDTEIRRAIQILSR---RTKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCHHHHHHHHHHHTS---SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhC---CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            555555555554432   23456789999999999999998764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=90.88  E-value=0.13  Score=44.03  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +..|+|+|.||+||||+.+.|...
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=90.83  E-value=0.11  Score=48.22  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=21.2

Q ss_pred             eEEEEeecCCCChhHHHHHhhccC
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      -.++++|.+|+|||||++.|.+-.
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            356999999999999999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=90.82  E-value=0.18  Score=50.13  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      +..|+|+|.|||||||+++.|..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999976

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=90.68  E-value=0.27  Score=41.84  Aligned_cols=40  Identities=23%  Similarity=0.402  Sum_probs=29.4

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      |.++.++.|.+.+...   ....+.|.|.||+|||+++..+..
T Consensus        21 g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           21 GQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             SCHHHHHHHHHHHHTT---CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHH
Confidence            5666777777666432   222389999999999999998875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=90.65  E-value=0.22  Score=45.55  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             EEEeecCCCChhHHHHHhhcc
Q 018454          309 VGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |+|+|.||+|||||+++|.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=90.60  E-value=0.22  Score=44.85  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +..|.|+|.||+|||||..+|.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            345899999999999999999764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=90.55  E-value=0.28  Score=49.88  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=22.1

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+-.++|||.+|+||||||+.|.+.
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHH
Confidence            34567899999999999999998763

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=90.53  E-value=0.12  Score=48.52  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|..|+|||||++.|.+-.
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3456999999999999999999854

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=90.42  E-value=0.16  Score=43.95  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=21.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .....|+|+|.||+||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999975

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=90.40  E-value=0.15  Score=48.28  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=21.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+-.|+++|.+|+||||+++.|.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            355789999999999999999975

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=90.40  E-value=0.11  Score=52.78  Aligned_cols=90  Identities=18%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             HHHHHHHhhhc--CCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcE-EEEEeccCCCChhh-HHHHHHHHhhhCCc--
Q 018454          201 RIWGELYKVID--SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM-ILLLNKCDLVPAWA-TKGWLRVLSKEYPS--  274 (355)
Q Consensus       201 ri~~el~kvi~--~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~v-ILVlNK~DLvp~~~-~~~w~~~l~~~~p~--  274 (355)
                      .++.++..+.+  .+|.+|+|+|+.....  ...+.+.+.+   ..|+ ++|+||+|...... ...+...+.  .|.  
T Consensus       200 ~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~---~~~i~gvVlNK~D~~~~~g~~l~~~~~~g--~PI~f  272 (504)
T 2j37_W          200 SLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD---KVDVASVIVTKLDGHAKGGGALSAVAATK--SPIIF  272 (504)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH---HHCCCCEEEECTTSCCCCTHHHHHHHHHC--CCEEE
T ss_pred             hHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh---hcCceEEEEeCCccccchHHHHHHHHHhC--CCeEE
Confidence            34444433322  7899999999987542  2233333332   2564 89999999875432 122222221  121  


Q ss_pred             --------------eEEEeeecCCCC-hHHHHHHHHHH
Q 018454          275 --------------LAFHASINKSFG-KGSLLSVLRQF  297 (355)
Q Consensus       275 --------------~~f~vSa~~~~G-i~~Ll~~L~q~  297 (355)
                                    ..+.+|+..|.| +.+|++.+.+.
T Consensus       273 ig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          273 IGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             EECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             eccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence                          012368888999 99999988766

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=90.33  E-value=0.28  Score=44.61  Aligned_cols=44  Identities=18%  Similarity=0.307  Sum_probs=30.8

Q ss_pred             ChHHHHHHHHHHHhhh----------ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLK----------SDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~----------~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.++.++.|.+++...          .-..+..+.|.|.||+|||+|..+|...
T Consensus        21 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           21 GLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            5666666665554321          1134556899999999999999999764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=90.29  E-value=0.16  Score=44.51  Aligned_cols=24  Identities=21%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+..|.|+|.||+||||+.+.|.+
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999865

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=90.24  E-value=0.15  Score=49.39  Aligned_cols=23  Identities=22%  Similarity=0.177  Sum_probs=20.5

Q ss_pred             ceEEEEeecCCCChhHHHHHhhc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      +-.|+++|.+|+|||||+++|.+
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999999976

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=90.18  E-value=0.3  Score=43.54  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..|.|.|.||+|||++..+|...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3456889999999999999998763

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=90.14  E-value=0.26  Score=50.06  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +..++|+|.+|+||||++|+|.+.
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            345899999999999999999873

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=90.13  E-value=0.22  Score=50.08  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=19.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhh
Q 018454          305 QAISVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      +-.-|+++|.+++|||+|+|.|+
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            44567899999999999999776

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=90.06  E-value=0.32  Score=45.25  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             ChHHHHHHHHHHHhhh----------ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLK----------SDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~----------~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.++.++.|.+.....          .-..+..|.|.|.||+|||+|.++|.+.
T Consensus        19 G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           19 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence            5566666555544321          1134456899999999999999999864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=90.05  E-value=0.32  Score=42.31  Aligned_cols=39  Identities=15%  Similarity=0.232  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+++.|..+...   .....+.|.|.||+|||+|+.+|...
T Consensus        37 ~~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           37 DELIGALKSAASG---DGVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             HHHHHHHHHHHHT---CSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4566666666542   23567899999999999999998753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=89.89  E-value=0.33  Score=41.65  Aligned_cols=43  Identities=26%  Similarity=0.305  Sum_probs=30.4

Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .|.+..++.|.+.+...  ..+-.+.|.|.||+|||||+..+...
T Consensus        26 ~g~~~~~~~l~~~l~~~--~~~~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           26 VGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             CSCHHHHHHHHHHHHHT--CCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35666677776665421  22235789999999999999998753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=89.79  E-value=0.3  Score=47.45  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.+++||.+|+||||+++.|.+.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhh
Confidence            4567899999999999999999763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=89.71  E-value=0.19  Score=47.62  Aligned_cols=45  Identities=16%  Similarity=0.216  Sum_probs=28.7

Q ss_pred             ChHHHHHHHHHHHhhh--ccccceEEEEeecCCCChhHHHHHhhccC
Q 018454          286 GKGSLLSVLRQFARLK--SDKQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~--~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      |-+.+++.|.......  .....-.++|+|.||+|||||++.|.+.-
T Consensus        29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4445555554443221  11122347899999999999999998754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=89.55  E-value=0.2  Score=45.37  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=22.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ..+..|+|+|.||+||||+...|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3578899999999999999999975

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=89.05  E-value=0.2  Score=41.90  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=19.0

Q ss_pred             EEEEeecCCCChhHHHHHhhc
Q 018454          308 SVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .|+++|.||+||||+-..|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999865

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=89.02  E-value=0.29  Score=46.12  Aligned_cols=44  Identities=16%  Similarity=0.179  Sum_probs=28.4

Q ss_pred             ChHHHHHHHHHHHhhh-ccccce--EEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLK-SDKQAI--SVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~-~~~~~i--~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.+..++.|...+... ....+.  .+.|+|.||+|||||++.+.+.
T Consensus        21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4444455444444321 112234  6899999999999999998764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=89.00  E-value=0.17  Score=49.31  Aligned_cols=25  Identities=16%  Similarity=0.255  Sum_probs=21.5

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCC
Confidence            3456999999999999999999854

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=88.92  E-value=0.42  Score=43.19  Aligned_cols=42  Identities=21%  Similarity=0.214  Sum_probs=29.4

Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+.-.++..|+.++...  .+.-.+.|.|.||+||||+..+|.+
T Consensus        39 ~~~~~f~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           39 IEFITFLGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             CCHHHHHHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHH
Confidence            45556677777776531  1223478999999999988877764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=88.92  E-value=0.39  Score=39.51  Aligned_cols=37  Identities=14%  Similarity=0.074  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ..+.+.+..+.     .....|.+.|-||+|||++..+|-..
T Consensus        14 ~~l~~~~~~~~-----~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           14 QEMNREVEAAA-----KRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             HHHHHHHHHHH-----TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             HHHHHHHHHHh-----CCCCcEEEECCCCccHHHHHHHHHHh
Confidence            34444444443     23456899999999999999998754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=88.87  E-value=0.23  Score=43.20  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+-.++++|.||+|||||++.|.+
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            344578999999999999999884

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=88.87  E-value=0.17  Score=49.19  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=21.4

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3456899999999999999998753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=88.80  E-value=0.23  Score=44.24  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ....|.|+|.||+||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999865

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=88.64  E-value=0.42  Score=39.35  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=21.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ....|.+.|-||+|||++..+|-..
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHh
Confidence            4467899999999999999998653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=88.62  E-value=0.23  Score=49.18  Aligned_cols=24  Identities=17%  Similarity=0.050  Sum_probs=21.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+-.++|+|.+|+|||||+++|++
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHh
Confidence            344679999999999999999986

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=88.59  E-value=0.21  Score=45.99  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.3

Q ss_pred             ceEEEEeecCCCChhHHHHHhhc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      +-.|+++|.+|+||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999965

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=88.55  E-value=0.25  Score=44.41  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+.-|.|.|.||+||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5677899999999999999999764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=88.55  E-value=0.34  Score=45.34  Aligned_cols=45  Identities=11%  Similarity=0.180  Sum_probs=31.2

Q ss_pred             CChHHHHHHHHHHHhhh-ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          285 FGKGSLLSVLRQFARLK-SDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .|.+..++.|.+.+... ....+-.+.|+|.||+|||||++.+.+.
T Consensus        23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            35666666666554321 1233457899999999999999998864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=88.51  E-value=0.18  Score=49.17  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.4

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCC
Confidence            3456899999999999999998854

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=88.36  E-value=0.24  Score=41.97  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=18.2

Q ss_pred             EEEEeecCCCChhHHHHHhhc
Q 018454          308 SVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      -.+|+|..|+|||||+.+|..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            347999999999999999854

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=88.30  E-value=0.27  Score=45.60  Aligned_cols=24  Identities=33%  Similarity=0.511  Sum_probs=21.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ....|+|+|.||+||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457799999999999999999974

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=88.27  E-value=0.26  Score=45.42  Aligned_cols=25  Identities=12%  Similarity=0.126  Sum_probs=21.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+--++++|.||+|||||++.|.+.
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3445689999999999999998764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=88.24  E-value=0.51  Score=47.17  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhh
Q 018454          305 QAISVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      ++..|.++|.+||||||+++.|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHH
Confidence            46788999999999999999987

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=88.22  E-value=0.5  Score=44.41  Aligned_cols=41  Identities=15%  Similarity=0.212  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ..+++.+.+++..........++|.|.||+|||+|..+|..
T Consensus       134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence            34555566666533222246789999999999999998864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=88.15  E-value=0.24  Score=50.78  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=22.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+-.
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45567999999999999999999854

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=88.10  E-value=0.5  Score=43.25  Aligned_cols=44  Identities=20%  Similarity=0.279  Sum_probs=31.1

Q ss_pred             ChHHHHHHHHHHHhhh---------ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLK---------SDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~---------~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.+..++.|.+.....         .......|.|.|.||+|||++.++|.+.
T Consensus        25 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           25 GQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            5666666666654321         0123467899999999999999999764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=88.09  E-value=0.23  Score=50.97  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=22.5

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.++++|.+|+|||||++.|.+-.
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            45568999999999999999999853

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=88.02  E-value=0.24  Score=48.11  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=21.3

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCCC
Confidence            3456899999999999999998853

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=88.02  E-value=0.26  Score=49.13  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=21.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..|.++|.||+||||+.+.|...
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4678899999999999999999754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=88.02  E-value=0.2  Score=56.43  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=23.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +.+-+|++||.+|+|||||++.|.+-
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcC
Confidence            35668999999999999999999984

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=88.00  E-value=0.35  Score=45.46  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=20.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+-.++|+|.+||||||++..|.+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            355789999999999999998864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=87.97  E-value=0.19  Score=44.25  Aligned_cols=40  Identities=20%  Similarity=0.224  Sum_probs=27.5

Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +|+..|=..|..     .-..+-.++++|.||+|||||+..|...
T Consensus         8 tG~~~LD~~l~g-----gi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A            8 TGSKELDKLLQG-----GIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             CSCHHHHHHTTT-----SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCChHHHHhhcC-----CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            465555444421     1124456789999999999999999863

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=87.95  E-value=0.26  Score=47.46  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=22.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.++++|.+|+|||||++.|.+..
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45678999999999999999999864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=87.94  E-value=0.74  Score=42.55  Aligned_cols=57  Identities=9%  Similarity=0.085  Sum_probs=39.5

Q ss_pred             hhcCCCEEEEEecCC-CCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHH
Q 018454          209 VIDSSDVVVQVLDAR-DPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL  268 (355)
Q Consensus       209 vi~~sDvVL~VvDar-dp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l  268 (355)
                      .+..+.+.++++|.. .++...+..+.+.+..   ..++|+|+||+|.+...........+
T Consensus       108 ~iaRal~~lllldep~~gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt~~e~~~~k~~i  165 (270)
T 3sop_A          108 PDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK---VVNIIPVIAKADTMTLEEKSEFKQRV  165 (270)
T ss_dssp             CCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT---TSEEEEEETTGGGSCHHHHHHHHHHH
T ss_pred             hhheeeeeeEEEecCCCcCCHHHHHHHHHHHh---cCcEEEEEeccccCCHHHHHHHHHHH
Confidence            356678889999843 5665555555555553   38999999999999876655444443

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=87.82  E-value=0.25  Score=48.57  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=21.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+-.
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            34457999999999999999998753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=87.65  E-value=0.68  Score=45.05  Aligned_cols=43  Identities=26%  Similarity=0.316  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHHHhhh-ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          287 KGSLLSVLRQFARLK-SDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ++.|.+.+.+.+... .......|+++|.||+||||+...|.+.
T Consensus         4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A            4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            445555444443322 1233456899999999999999988763

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=87.61  E-value=0.37  Score=45.98  Aligned_cols=38  Identities=8%  Similarity=0.011  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       289 ~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .|...|.....   ...+-.+++.|.||+|||++++.+...
T Consensus        31 ~i~~~L~~~i~---~~~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           31 RIFLPIYDSLM---SSQNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             HHHHHHHHHHH---TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34444444432   346678899999999999999998764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=87.58  E-value=0.26  Score=47.87  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCC
Confidence            3456899999999999999998853

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=87.52  E-value=0.27  Score=48.24  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=21.5

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHcCC
Confidence            3456999999999999999999854

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=87.51  E-value=0.25  Score=50.96  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=22.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.+++||.+|+|||||++.|.+--
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            45678999999999999999999854

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=87.51  E-value=0.21  Score=51.29  Aligned_cols=26  Identities=35%  Similarity=0.486  Sum_probs=22.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.+++||.+|+|||||++.|.+--
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            45678999999999999999999854

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=87.47  E-value=0.27  Score=47.98  Aligned_cols=24  Identities=13%  Similarity=0.223  Sum_probs=20.9

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.++++|.+|+|||||++.|.+-
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            345689999999999999999874

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=87.41  E-value=0.47  Score=43.23  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=21.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+..+.|.|.||+|||++..+|...
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=87.36  E-value=0.39  Score=49.03  Aligned_cols=31  Identities=29%  Similarity=0.467  Sum_probs=24.7

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCcccc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILF  334 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v  334 (355)
                      ..+-.+++||..|+|||||++.|.+......
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~   53 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF   53 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCCCT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence            3455679999999999999999998654433

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=87.31  E-value=0.33  Score=43.29  Aligned_cols=25  Identities=24%  Similarity=0.386  Sum_probs=21.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ..+..|+++|.+|+||||+.+.|.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3566789999999999999999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=87.07  E-value=0.27  Score=49.22  Aligned_cols=25  Identities=32%  Similarity=0.336  Sum_probs=21.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.|+++|.+|+|||||++.|.+-
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4556899999999999999999874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=87.04  E-value=0.33  Score=42.63  Aligned_cols=25  Identities=32%  Similarity=0.541  Sum_probs=21.8

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      -...|+++|.+++||||+-+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            3567899999999999999998764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=87.03  E-value=0.34  Score=45.09  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=21.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +.+.-+.+.|.||+|||+|..+|-..
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45567788899999999999998753

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=86.99  E-value=0.35  Score=43.67  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=22.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .....|++.|.|++||||+-+.|...
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999998763

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=86.89  E-value=0.75  Score=41.66  Aligned_cols=27  Identities=22%  Similarity=0.379  Sum_probs=22.8

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhcc
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ......+.|.|.||+|||+|..+|...
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            345678899999999999999998764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=86.87  E-value=0.36  Score=41.76  Aligned_cols=24  Identities=13%  Similarity=0.080  Sum_probs=20.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+-.+.++|.||+|||||++.|..
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            344578999999999999999986

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=86.83  E-value=0.75  Score=43.32  Aligned_cols=44  Identities=18%  Similarity=0.153  Sum_probs=29.0

Q ss_pred             ChHHHHHHHHHHHhhh-ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLK-SDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.++.++.|...+... ....+-.+.|.|.||+|||+|++.+...
T Consensus        24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            4455555444443321 1233457899999999999999998764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=86.82  E-value=0.26  Score=50.69  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.+++||.+|+|||||++.|.+--
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45578999999999999999999853

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=86.77  E-value=0.32  Score=44.19  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhcc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .++.-|.|.|.+|+||||+.+.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            45678899999999999999999865

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=86.77  E-value=0.36  Score=45.24  Aligned_cols=41  Identities=15%  Similarity=0.150  Sum_probs=29.1

Q ss_pred             ChHHHHHHHHHHH-hhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFA-RLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~-~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |-+...+.|.+.. ..  .+.+. +.|+|.+|+||||+++.|.+.
T Consensus        18 g~~~~~~~l~~~~~~~--~~~~~-~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           18 HNEELTNFLKSLSDQP--RDLPH-LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             SCHHHHHHHHTTTTCT--TCCCC-EEEECSTTSSHHHHHHTHHHH
T ss_pred             CCHHHHHHHHHHHhhC--CCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence            4556666666654 21  12233 899999999999999998773

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=86.63  E-value=0.28  Score=49.56  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.6

Q ss_pred             eEEEEeecCCCChhHHHHHhhc
Q 018454          307 ISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      -.++++|.+|+|||||++.|.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            3468999999999999999986

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=86.61  E-value=0.43  Score=49.51  Aligned_cols=31  Identities=26%  Similarity=0.333  Sum_probs=24.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCccccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNVILFF  335 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs  335 (355)
                      .+-.++++|.+|+|||||++.|.+......+
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G  132 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLG  132 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            3456799999999999999999986544433

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=86.50  E-value=0.36  Score=47.16  Aligned_cols=24  Identities=21%  Similarity=0.182  Sum_probs=21.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+-.++++|.||+|||||++.|.+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            445679999999999999999986

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=86.36  E-value=0.24  Score=47.90  Aligned_cols=25  Identities=12%  Similarity=0.139  Sum_probs=21.4

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCccHHHHHHHHHcCC
Confidence            3456899999999999999998854

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=86.34  E-value=0.27  Score=50.42  Aligned_cols=25  Identities=32%  Similarity=0.541  Sum_probs=22.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.++|+|.+|+|||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4567899999999999999999864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=86.28  E-value=0.67  Score=43.83  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+-.++++|.+|+||||++..|.+
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Confidence            455689999999999999998875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=86.27  E-value=0.38  Score=47.84  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=22.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.++++|.+|+|||||++.|.+..
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45567999999999999999998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=86.23  E-value=0.37  Score=49.15  Aligned_cols=25  Identities=36%  Similarity=0.581  Sum_probs=0.0

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ..+-.+++||..|+|||||++.|.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~G   69 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAG   69 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=86.21  E-value=0.54  Score=44.03  Aligned_cols=44  Identities=14%  Similarity=0.177  Sum_probs=30.9

Q ss_pred             ChHHHHHHHHHHHhhh-ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLK-SDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.+..++.|.+.+... ....+..+.|.|.||+||||+++.+...
T Consensus        23 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           23 HREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             TCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            5566666666555322 1234557899999999999999998753

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=86.03  E-value=0.68  Score=43.16  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=30.3

Q ss_pred             ChHHHHHHHHHHHhhh--ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLK--SDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~--~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.+.+++.|...+...  .......|.|.|.||+|||+|..+|...
T Consensus        33 G~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           33 GQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            5556666655555432  1223456899999999999999999654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=85.72  E-value=0.77  Score=42.31  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=30.3

Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .|.+..++.|.+.+..     +-.+.+.|.+++|||||++.+...
T Consensus        15 ~gR~~el~~L~~~l~~-----~~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           15 FDREEESRKLEESLEN-----YPLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             CSCHHHHHHHHHHHHH-----CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhc-----CCeEEEECCCcCCHHHHHHHHHHH
Confidence            4667777777666542     135789999999999999998864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=85.71  E-value=0.21  Score=48.27  Aligned_cols=25  Identities=16%  Similarity=0.372  Sum_probs=21.4

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3456899999999999999998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	3e-19
d1t9ha2	231	c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C	3e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-05
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	3e-05
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	3e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	3e-05
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	6e-05
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	7e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	2e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	2e-04
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	4e-04
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-04
d1wxqa1	319	c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr	0.001
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.001
d1u0la2	225	c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C	0.001
d1ni3a1	296	c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter	0.002
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.002
d1jala1	278	c.37.1.8 (A:1-278) YchF GTP-binding protein N-term	0.003
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.004

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 84.1 bits (207), Expect = 3e-19
 Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 11/134 (8%)

Query: 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW 264
           E+ + +   D+V +++DAR P  +R   +E  L    K+K  I+LLNK D   A  T+ W
Sbjct: 8   EVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQW 63

Query: 265 LRVLSKEYPSLAFHASINKS-------FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNV 317
                 +        S+N           K  L     +        +AI    +G PNV
Sbjct: 64  KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNV 123

Query: 318 GKSSVINTLRTKNV 331
           GKS++IN L  KN+
Sbjct: 124 GKSTLINRLAKKNI 137

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 214 DVVVQVLDARDPQGTRCHHLERHL-KEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY 272
           D  V V  A  P       L+R L          I+ + K DL+    T+  ++  +++Y
Sbjct: 12  DQAVLVFSAVQPS-FSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY 70

Query: 273 PSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVI 332
            ++ +   +  S  + SL       A +    Q  +  F G   VGKSS++N +  +  +
Sbjct: 71  RNIGYDVYLTSSKDQDSL-------ADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGL 123

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 21/52 (40%)

Query: 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFGEW 355
             AI V  VG PNVGKS++ N +  K   L  P            +F  G  
Sbjct: 6   TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 57

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFGEW 355
           + +  VG PNVGKS+++N L  ++  +             + +   G  
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL 49

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 308 SVGFVGYPNVGKSSVINTLRTKNVI 332
           ++ F G  NVGKS++I  L  K V 
Sbjct: 2   TIIFAGRSNVGKSTLIYRLTGKKVR 26

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 266 RVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL--KSDKQAISVGFVGYPNVGKSSVI 323
           +++S+E  +L     I      G++       +    + D   ++V   G    GKSS I
Sbjct: 19  KIISQEILNL-----IELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI 73

Query: 324 NTLR 327
           NTLR
Sbjct: 74  NTLR 77

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.1 bits (95), Expect = 6e-05
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 309 VGFVGYPNVGKSSVINTLRTKNV 331
           VG VG+P+VGKS++++ + +   
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKP 26

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 309 VGFVGYPNVGKSSVINTLRTKNV 331
           VG VGYPN GKSS++  +   + 
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHP 26

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 309 VGFVGYPNVGKSSVINTLRTKNV 331
           +  VG PNVGKS+++N L  + +
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKI 30

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 309 VGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFGEW 355
           V  VG PNVGKS++ N L  K   +      V        + ++G+ 
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT 49

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 12/45 (26%), Positives = 16/45 (35%)

Query: 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQ 347
               I V F G  N GKSS +NTL  +  +     +         
Sbjct: 13  SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 57

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG 353
           + V   G PN GKSS++N L  +   +    +        + +   G
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG 48

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 309 VGFVGYPNVGKSSVINTL 326
           +G VG PNVGKS+  +  
Sbjct: 3   IGVVGKPNVGKSTFFSAA 20

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 309 VGFVGYPNVGKSSVINTLRTKNV 331
           V  VG PNVGKS+++N L    V
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKV 30

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 11/120 (9%)

Query: 214 DVVVQVLDARDPQGTRCHHLERHL-KEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY 272
           D V+ V+  + P+ T  + +++ L          ++++NK DL      +    +     
Sbjct: 12  DQVILVVTVKMPE-TSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 70

Query: 273 PSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVI 332
                  +  K+        +      LK           G   VGKSS++N +     +
Sbjct: 71  GLYPIVKTSAKTGMG-----IEELKEYLKGKIST----MAGLSGVGKSSLLNAINPGLKL 121

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 296 QFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVI 332
           Q+ R  ++   +  G VG PNVGKS+    + TK+V+
Sbjct: 3   QWGRPGNN---LKTGIVGMPNVGKSTFFRAI-TKSVL 35

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 292 SVLRQFARLKS-DKQAISVGFVGYPNVGKSSVINTLRTKNV 331
            +L     LK  D  ++++  +G   VGKSS +N++  + V
Sbjct: 17  KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERV 57

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 306 AISVGFVGYPNVGKSSVINTLRTKN 330
               G VG PNVGKS++ N L TK 
Sbjct: 2   GFKCGIVGLPNVGKSTLFNAL-TKA 25

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 290 LLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQ 347
           LLS+LR+     +  Q + +  +G  N GK++++  L ++++    P           
Sbjct: 2   LLSILRKLK--SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.95
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.7
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.66
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.14
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.99
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.95
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.94
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.74
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.67
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.66
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.65
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.63
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.62
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.53
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.47
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.45
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.42
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.35
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.35
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.32
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.28
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.27
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.25
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.25
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.25
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.2
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.19
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.18
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.14
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.13
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.12
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.11
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.1
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.09
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.04
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.04
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.02
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.02
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.02
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.01
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.01
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.01
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.99
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.95
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.94
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.92
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.91
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.89
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.89
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.84
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.8
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.77
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.76
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.75
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.74
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.72
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.71
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.64
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.62
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.6
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.59
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.53
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.44
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.36
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.32
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.19
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.18
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.16
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.11
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.99
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	96.94
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.87
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.52
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	96.47
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.22
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.17
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.13
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.7
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.66
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	95.57
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.4
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.2
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.04
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.61
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.44
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.14
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.07
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.01
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.91
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.76
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.64
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.6
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.52
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.39
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.32
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.94
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	92.86
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.85
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.75
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	92.68
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	92.68
d2awna2	232	Maltose transport protein MalK, N-terminal domain	92.32
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	92.3
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.28
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.21
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.19
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.14
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.04
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	92.02
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	91.97
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	91.95
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	91.92
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	91.72
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	91.61
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	91.57
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.56
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	91.47
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	91.4
d1g2912	240	Maltose transport protein MalK, N-terminal domain	91.37
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	90.89
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	90.78
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	90.39
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	89.59
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	89.55
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	89.45
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	89.34
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	89.21
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	88.32
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	88.18
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	88.0
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	87.34
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.33
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	86.79
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	86.44
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	86.4
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	85.5
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	85.34
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	85.19
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	84.27
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	84.04
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	83.81
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	82.43
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	82.09
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	81.53
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	81.46
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	81.26
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	81.22
d1j8yf2	211	GTPase domain of the signal sequence recognition p	80.6
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	80.21

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=9.9e-29  Score=231.70  Aligned_cols=141  Identities=26%  Similarity=0.319  Sum_probs=113.1

Q ss_pred             hHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEE
Q 018454          198 QSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAF  277 (355)
Q Consensus       198 ~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f  277 (355)
                      |+.+..+++.+.++.+|+||+|+|||+|.+++++.++++++    +||.|+|+||+||++.+....|.++|...+. ..+
T Consensus         1 Hm~ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~----~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~-~~i   75 (273)
T d1puja_           1 HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK----NKPRIMLLNKADKADAAVTQQWKEHFENQGI-RSL   75 (273)
T ss_dssp             CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS----SSCEEEEEECGGGSCHHHHHHHHHHHHTTTC-CEE
T ss_pred             CHHHHHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc----CCCeEEEEECccCCchHHHHHHHHHHHhcCC-ccc
Confidence            45678899999999999999999999999999999998874    7999999999999999999999999987643 356


Q ss_pred             EeeecCCCChHHHHHHHHHHHhhh--------ccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454          278 HASINKSFGKGSLLSVLRQFARLK--------SDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW  343 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~~~~--------~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~  343 (355)
                      .+|+.++.|...+...+.+++...        .....++|++||+||||||||||+|++++++.|++.||+|++
T Consensus        76 ~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~  149 (273)
T d1puja_          76 SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS  149 (273)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-----------
T ss_pred             eeecccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccceEEECCccccccc
Confidence            689999999988877666555432        234679999999999999999999999999999999999954

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=4.4e-17  Score=148.24  Aligned_cols=119  Identities=18%  Similarity=0.185  Sum_probs=90.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-ceEEEeeecCCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-SLAFHASINKSFG  286 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-~~~f~vSa~~~~G  286 (355)
                      .+++.|.|++|+.+.+|.. ....|++||.. +..+.+++||+||+||+++.....|...+..... ..++.+|++++.|
T Consensus         7 ~vANiD~vliV~s~~~P~~-~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g   85 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPET-STYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMG   85 (225)
T ss_dssp             TEESCCEEEEEECSSTTCC-CHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred             CcccCCEEEEEEeCCCCCC-CHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccchh
Confidence            5789999999999988864 34577888764 4578999999999999987766666655443221 2467789999999


Q ss_pred             hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC
Q 018454          287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS  338 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP  338 (355)
                      +++|.+.|.          +-+..|+|.||||||||||+|.+.....|+.+.
T Consensus        86 ~~~L~~~l~----------~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          86 IEELKEYLK----------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             HHHHHHHHS----------SSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             HhhHHHHhc----------CCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            998887763          234579999999999999999998888888775

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=1.6e-17  Score=151.68  Aligned_cols=119  Identities=21%  Similarity=0.257  Sum_probs=85.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC---CceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY---PSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~---p~~~f~vSa~~~  284 (355)
                      .+++.|.+++|+.+.+|. .....|+++|.. +..+.+.+||+||+||++....+.+...+...|   ...++.+|+.++
T Consensus         7 ~vANiD~~~iV~s~~~P~-~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~   85 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPS-FSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ   85 (231)
T ss_dssp             TEECCCEEEEEEESTTTT-CCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred             CccccCEEEEEEECCCCC-CCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCCh
Confidence            578999999999999885 445678888765 557899999999999998765555544443322   345677899999


Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS  338 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP  338 (355)
                      .|+++|.+.|.         ...+ .|+|.||||||||||+|++.....|+++.
T Consensus        86 ~gl~~L~~~l~---------~~~~-vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          86 DSLADIIPHFQ---------DKTT-VFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTCTTTGGGGT---------TSEE-EEEESHHHHHHHHHHHHCC----------
T ss_pred             hHHHHHHHhhc---------cceE-EEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            99998877663         2344 69999999999999999999888888876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=3.5e-11  Score=102.96  Aligned_cols=99  Identities=19%  Similarity=0.145  Sum_probs=77.9

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-ceEEE
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-SLAFH  278 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-~~~f~  278 (355)
                      ..+...+...+..+|+||+|+|++++....+..+.+.++....++|+|+|+||+|++...  +.+.+.+....+ ..++.
T Consensus        72 ~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~  149 (178)
T d1wf3a1          72 EFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP--EEAMKAYHELLPEAEPRM  149 (178)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH--HHHHHHHHHTSTTSEEEE
T ss_pred             hhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCH--HHHHHHHHhhcccCceEE
Confidence            445677788899999999999999988776677777776655678999999999998753  344555555544 45678


Q ss_pred             eeecCCCChHHHHHHHHHHHhh
Q 018454          279 ASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      +||+++.|+++|++.|.+++++
T Consensus       150 iSA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         150 LSALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             CCTTCHHHHHHHHHHHHTTCCB
T ss_pred             EecCCCCCHHHHHHHHHHhCCC
Confidence            8999999999999999887653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.99  E-value=1.3e-09  Score=93.63  Aligned_cols=99  Identities=16%  Similarity=0.112  Sum_probs=74.2

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHH---HHhh-h---C
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLR---VLSK-E---Y  272 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~---~l~~-~---~  272 (355)
                      ..+.+.+...+..+|++++|+|++++.......+...+..  .++|+++|+||+|+++.........   .+.+ .   .
T Consensus        70 ~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~--~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
T d1wb1a4          70 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK  147 (179)
T ss_dssp             HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG
T ss_pred             cccccchhhhhhhccccccccccccccchhhhhhhhhhhh--cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCC
Confidence            5677788889999999999999998776555555555554  5899999999999998754332222   2211 1   1


Q ss_pred             CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          273 PSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       273 p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ...+|++||++|+|+++|++.|.+.++.
T Consensus       148 ~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         148 NSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             GCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            2456789999999999999999888764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=1.5e-09  Score=91.67  Aligned_cols=98  Identities=14%  Similarity=0.134  Sum_probs=73.5

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      ......+...+..+|++++++|++.+....+..+...+..  .++|+|+|+||+|++..... .....+.+.....++.+
T Consensus        68 ~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~--~~~pviiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~i~i  144 (171)
T d1mkya1          68 QKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFER-EVKPELYSLGFGEPIPV  144 (171)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHHH-HTHHHHGGGSSCSCEEC
T ss_pred             cccccccccccccCcEEEEeeccccccccccccccccccc--ccccccccchhhhhhhhhhh-HHHHHHHhcCCCCeEEE
Confidence            3445566778899999999999998887777777777765  57999999999999754432 22222322333445779


Q ss_pred             eecCCCChHHHHHHHHHHHhh
Q 018454          280 SINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ||++|.|+++|++.|.+.+++
T Consensus       145 SAk~g~gid~L~~~i~~~l~e  165 (171)
T d1mkya1         145 SAEHNINLDTMLETIIKKLEE  165 (171)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHHhCCC
Confidence            999999999999999888764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=2e-09  Score=92.91  Aligned_cols=96  Identities=17%  Similarity=0.175  Sum_probs=74.4

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceE
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLA  276 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~  276 (355)
                      .+..........+|+|++|+|++.+....+..+.+++..  .++|+++|+||+|+++........+.+.+.    ....+
T Consensus        94 ~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_          94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             hHHhhhhccccchhhhhhhhhcccccccccccccccccc--ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCE
Confidence            445566677788999999999998887766777777776  579999999999998866544444433332    23457


Q ss_pred             EEeeecCCCChHHHHHHHHHHH
Q 018454          277 FHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       277 f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      +.+||+++.|+++|++.|.+++
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            8899999999999999998775

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=1.9e-08  Score=85.49  Aligned_cols=93  Identities=18%  Similarity=0.282  Sum_probs=68.8

Q ss_pred             HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh--HHHHHHHHhhhC----CceEEE
Q 018454          205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEY----PSLAFH  278 (355)
Q Consensus       205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~----p~~~f~  278 (355)
                      .+...+..+|+|++|+|+..+.......+..++..  .++|+|+|+||+|++....  .....+.+....    ...++.
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~--~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF  161 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHHhcCCEEEEeecccccchhhHHHHHHHHHH--cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEE
Confidence            45556788999999999998887766677666665  5789999999999975432  223333333321    234788


Q ss_pred             eeecCCCChHHHHHHHHHHHh
Q 018454          279 ASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      +||++|.|+++|++.|.+.+.
T Consensus       162 vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         162 TSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999987653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.67  E-value=6.2e-08  Score=81.78  Aligned_cols=96  Identities=15%  Similarity=0.027  Sum_probs=65.8

Q ss_pred             HHHHHhhhcCCCEEEEEecCCCC-----------CCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh--HHHHHHHHh
Q 018454          203 WGELYKVIDSSDVVVQVLDARDP-----------QGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA--TKGWLRVLS  269 (355)
Q Consensus       203 ~~el~kvi~~sDvVL~VvDardp-----------~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~  269 (355)
                      ...+...+..+|++++|+|++++           ....+..+.+++..  .++|+|+|+||+|++....  ...+...+.
T Consensus        72 ~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~  149 (184)
T d2cxxa1          72 VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFE  149 (184)
T ss_dssp             HHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHT
T ss_pred             hhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHHHHHHHHHHHhc
Confidence            34455677889999999999743           33344455556654  5799999999999886431  222223332


Q ss_pred             hhC---CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          270 KEY---PSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       270 ~~~---p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ...   ...++.+||++|.|+++|++.|.+.+++
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            211   1236678999999999999999888764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.66  E-value=4.5e-08  Score=80.96  Aligned_cols=87  Identities=22%  Similarity=0.281  Sum_probs=64.5

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      +..+..+..+|+|++|+|+.++.......+...+    ...++++++||+|+.+....+.....+....  .+|.+||++
T Consensus        72 ~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~----~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~--~~~~vSA~~  145 (160)
T d1xzpa2          72 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKLGTDR--HMVKISALK  145 (160)
T ss_dssp             HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHHTCST--TEEEEEGGG
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhc----ccccceeeeeeccccchhhhHHHHHHhCCCC--cEEEEECCC
Confidence            3455567889999999999998765544444333    4688999999999998665554444444333  367789999


Q ss_pred             CCChHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQ  296 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q  296 (355)
                      |.|+++|++.|.+
T Consensus       146 g~gi~~L~~~I~k  158 (160)
T d1xzpa2         146 GEGLEKLEESIYR  158 (160)
T ss_dssp             TCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.65  E-value=6.2e-08  Score=84.74  Aligned_cols=102  Identities=15%  Similarity=0.157  Sum_probs=69.3

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCC-cchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH----HHHHHhh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGT-RCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG----WLRVLSK  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s-~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~----w~~~l~~  270 (355)
                      +|| ..+...+...+..+|++|+|+|+.+.... ...+...++.. ..-+++|+++||+||++......    ....+..
T Consensus        94 PGH-~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~  171 (205)
T d2qn6a3          94 PGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  171 (205)
T ss_dssp             SCH-HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             chH-HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCCceeeeccccCCCccchHHHHHHHHHHHHhcc
Confidence            566 45677788889999999999999987522 22223333332 12357888999999997653222    2222222


Q ss_pred             hCC--ceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          271 EYP--SLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       271 ~~p--~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      .++  ..++++||++|.|+++|++.|.++.+
T Consensus       172 ~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         172 TWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            222  34678999999999999999998865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.63  E-value=4.1e-08  Score=83.30  Aligned_cols=97  Identities=24%  Similarity=0.236  Sum_probs=69.2

Q ss_pred             HHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454          203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA  279 (355)
Q Consensus       203 ~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v  279 (355)
                      +.+....+..+|++++++|+..........+..++..   ...++|+|+|+||+|++.....+...+.+... ...+|.+
T Consensus        70 ~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~-~~~~~~i  148 (180)
T d1udxa2          70 GLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE-GLAVLPV  148 (180)
T ss_dssp             CHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEC
T ss_pred             HHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhc-CCeEEEE
Confidence            3456667899999999999865432222222233221   12358999999999999887666666666543 3456788


Q ss_pred             eecCCCChHHHHHHHHHHHhh
Q 018454          280 SINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      ||++|.|+++|++.|.++++.
T Consensus       149 SA~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         149 SALTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999888764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=1.2e-08  Score=84.66  Aligned_cols=92  Identities=14%  Similarity=0.120  Sum_probs=66.5

Q ss_pred             HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHH-HHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEE
Q 018454          200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL-ERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFH  278 (355)
Q Consensus       200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l-~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~  278 (355)
                      ...+..+......+|++++++|+.++.......+ ..++.....++|+|+|+||+||.+....      +.+.....++.
T Consensus        68 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~------~~~~~~~~~~~  141 (161)
T d2gj8a1          68 RIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------MSEVNGHALIR  141 (161)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------EEEETTEEEEE
T ss_pred             hHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH------HHHhCCCcEEE
Confidence            3445666777889999999999998876555444 3344443357999999999998764321      12223456788


Q ss_pred             eeecCCCChHHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      +||+++.|+++|++.|.+.
T Consensus       142 iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         142 LSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             CCTTTCTTHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            9999999999999998753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.60  E-value=2.4e-08  Score=89.02  Aligned_cols=91  Identities=16%  Similarity=0.215  Sum_probs=65.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH------------------HHH-----
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT------------------KGW-----  264 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~------------------~~w-----  264 (355)
                      ..+..+|++|+|+||.+........+..++..  .++|+|+|+||+|++..+..                  ...     
T Consensus        89 ~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  166 (227)
T d1g7sa4          89 RGGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVY  166 (227)
T ss_dssp             SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHH
T ss_pred             hcccccceEEEEEecccCcccchhHHHHHhhc--CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHHHH
Confidence            36788999999999999887777777777765  58999999999999753310                  001     


Q ss_pred             --HHHHhhh------------C--CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          265 --LRVLSKE------------Y--PSLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       265 --~~~l~~~------------~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                        ...+...            +  ...++++||.+|.|+++|++.|..+.+.
T Consensus       167 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         167 ELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence              1111111            0  1246788999999999999999887754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.53  E-value=4e-08  Score=89.37  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=36.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeE
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWY  342 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~  342 (355)
                      ...++|.++|.||||||||+|+|++.+++.+++.||+|+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~   68 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGP   68 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcce
Confidence            567999999999999999999999999999999999983

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.47  E-value=5.2e-07  Score=77.86  Aligned_cols=102  Identities=15%  Similarity=0.126  Sum_probs=67.5

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH----HHHHHhh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG----WLRVLSK  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~----w~~~l~~  270 (355)
                      +|| ..+...+...+..+|++++|+|+.++.... ..+....+.. ..-.++|+++||+|+++......    ..+.+..
T Consensus        86 PGh-~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~-~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~  163 (195)
T d1kk1a3          86 PGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQKNIIIAQNKIELVDKEKALENYRQIKEFIEG  163 (195)
T ss_dssp             SSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             chh-hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHH-hcCccceeeeecccchhhHHHHHHHHHHHHHhcc
Confidence            565 567777888899999999999999875332 1122222322 12345788999999998643221    1222222


Q ss_pred             hC--CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454          271 EY--PSLAFHASINKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       271 ~~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ..  .+.++++||.+|.|+++|++.+.++.|
T Consensus       164 ~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         164 TVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            22  134678999999999999999987653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.45  E-value=1.8e-07  Score=78.52  Aligned_cols=88  Identities=16%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEE
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAF  277 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f  277 (355)
                      ...+..+|++|+|+|+.|+...  ..+..++..     ...++|+++|+||+||.+........+.+..    ..+..+|
T Consensus        78 ~~~~~~~~~ii~v~d~~d~~s~--~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (176)
T d1fzqa_          78 RSYFENTDILIYVIDSADRKRF--EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQ  155 (176)
T ss_dssp             HHHHTTCSEEEEEEETTCGGGH--HHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred             HHHhhccceeEEeeccccccch--hhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEE
Confidence            3467899999999999886432  222222221     2246899999999999875444444444332    2345677


Q ss_pred             EeeecCCCChHHHHHHHHH
Q 018454          278 HASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      .+||++|.|+++++++|.+
T Consensus       156 ~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         156 SCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             ECCTTTCTTHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHh
Confidence            8999999999999998764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=5e-08  Score=81.78  Aligned_cols=39  Identities=31%  Similarity=0.393  Sum_probs=24.5

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      +.....|+|||+||||||||||+|.+.+...+...+|+|
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~   51 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGR   51 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC------------
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccc
Confidence            345789999999999999999999998766555555544

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.35  E-value=3.9e-07  Score=77.15  Aligned_cols=91  Identities=20%  Similarity=0.172  Sum_probs=60.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh----hhCCceEEEeee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS----KEYPSLAFHASI  281 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~----~~~p~~~f~vSa  281 (355)
                      .+..+|++++|+|+.|+.....  ..+...+.. ...+.|+++|+||+||..........+.+.    ...+..++.+||
T Consensus        81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA  160 (182)
T d1moza_          81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA  160 (182)
T ss_dssp             TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred             hhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence            5678899999999998764422  112222221 224689999999999965322233333332    123455788999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++|.|++++++.|.+.+.
T Consensus       161 ~~g~gv~e~~~~l~~~i~  178 (182)
T d1moza_         161 IKGEGITEGLDWLIDVIK  178 (182)
T ss_dssp             GGTBTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999887764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=2.6e-07  Score=77.05  Aligned_cols=88  Identities=14%  Similarity=0.161  Sum_probs=59.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSFG  286 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~G  286 (355)
                      .+..+|++++|+|+.++.+... ..+...+.+..++.|+|+|.||+||..... ...-.+.+.+.+....+.+||++|.|
T Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~  150 (164)
T d1z2aa1          71 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN  150 (164)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             hhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcC
Confidence            5678999999999988754321 112223333346899999999999965321 11222333334445578899999999


Q ss_pred             hHHHHHHHHH
Q 018454          287 KGSLLSVLRQ  296 (355)
Q Consensus       287 i~~Ll~~L~q  296 (355)
                      ++++++.|.+
T Consensus       151 v~e~f~~l~~  160 (164)
T d1z2aa1         151 VSEVFKYLAE  160 (164)
T ss_dssp             SHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=5.4e-07  Score=75.25  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=60.8

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      ..+..+|++++|.|+.++..... ..+...+..  ...+.|+++|.||+||.......+-...+.+.+....|.+||++|
T Consensus        70 ~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g  149 (166)
T d1ctqa_          70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTR  149 (166)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred             hhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCC
Confidence            45678999999999988643211 222222322  124689999999999976443333333344444445788999999


Q ss_pred             CChHHHHHHHHHHH
Q 018454          285 FGKGSLLSVLRQFA  298 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~  298 (355)
                      .|+++++..|.+.+
T Consensus       150 ~gi~e~f~~i~~~i  163 (166)
T d1ctqa_         150 QGVEDAFYTLVREI  163 (166)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999998776544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.28  E-value=1.2e-07  Score=81.38  Aligned_cols=35  Identities=29%  Similarity=0.302  Sum_probs=21.3

Q ss_pred             EEEEeecCCCChhHHHHHhhccC-ccccCCCCCeeE
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVWY  342 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT~  342 (355)
                      .|++||+||||||||||+|.+.+ .+.+++.|++|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~   60 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQ   60 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-------------C
T ss_pred             EEEEECCCCCCHHHHHHHhcCCCceEEeecccceee
Confidence            79999999999999999999865 467888899883

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.27  E-value=1.1e-06  Score=76.71  Aligned_cols=101  Identities=15%  Similarity=0.128  Sum_probs=65.8

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH-H----HHHHHHhh
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT-K----GWLRVLSK  270 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-~----~w~~~l~~  270 (355)
                      +|| ..+.+.+...+..+|++|+|+||.+...........++.. ...+++|+++||+|+++.... +    +...++..
T Consensus        74 PGh-~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~-~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~  151 (196)
T d1d2ea3          74 PGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE  151 (196)
T ss_dssp             SSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             cch-HHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHH-hcCCcEEEEEecccccccHHHHHHHHHHHHHHHHH
Confidence            455 4566778889999999999999998776554444444443 234678999999999874321 2    22222322


Q ss_pred             h-C-C--ceEEEeeecCC----------CChHHHHHHHHHHH
Q 018454          271 E-Y-P--SLAFHASINKS----------FGKGSLLSVLRQFA  298 (355)
Q Consensus       271 ~-~-p--~~~f~vSa~~~----------~Gi~~Ll~~L~q~~  298 (355)
                      . + +  ..++.+|+.+|          .++.+|++.|.++.
T Consensus       152 ~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             hCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            1 1 1  33677899887          36677777766554

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.25  E-value=1e-06  Score=73.93  Aligned_cols=91  Identities=15%  Similarity=0.107  Sum_probs=59.7

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEe
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHA  279 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~v  279 (355)
                      ...+..+|.+|+|+|+.++.....  ..+...+.. ...+.|+++|+||+||............+...    .+..++.+
T Consensus        74 ~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~  153 (173)
T d1e0sa_          74 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS  153 (173)
T ss_dssp             GGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred             HhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEe
Confidence            347889999999999987543221  112222221 23578999999999996533222223332211    24456789


Q ss_pred             eecCCCChHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~  297 (355)
                      ||++|.|+++++++|.+.
T Consensus       154 SA~tg~gv~e~~~~l~~~  171 (173)
T d1e0sa_         154 CATSGDGLYEGLTWLTSN  171 (173)
T ss_dssp             BTTTTBTHHHHHHHHHHH
T ss_pred             eCCCCcCHHHHHHHHHHh
Confidence            999999999999998754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=1.1e-06  Score=74.48  Aligned_cols=97  Identities=19%  Similarity=0.212  Sum_probs=64.8

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCC
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYP  273 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p  273 (355)
                      ++.++...+..+++++++++.................   .    ...++|+|+|+||+|+..... .+.+.+.+.... 
T Consensus        69 ~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-  147 (185)
T d1lnza2          69 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDY-  147 (185)
T ss_dssp             THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCC-
T ss_pred             HHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCC-
Confidence            4456667788899999999987665543322111111   1    123689999999999987543 233333333323 


Q ss_pred             ceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454          274 SLAFHASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                       .+|.+||++|.|+++|++.|.+.++.
T Consensus       148 -~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         148 -PVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             -CBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             -cEEEEECCCCCCHHHHHHHHHHhhhh
Confidence             35677999999999999999888754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=7.3e-07  Score=74.77  Aligned_cols=89  Identities=18%  Similarity=0.147  Sum_probs=58.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHH---HHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~---L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|++|+|+|+.++.+.  ..+..+   +..  ...+.|+++|.||+||..... ...-...+...+....+.+||+
T Consensus        68 ~~~~~d~~ilv~d~t~~~s~--~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  145 (168)
T d2gjsa1          68 CMAMGDAYVIVYSVTDKGSF--EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA  145 (168)
T ss_dssp             HHTSCSEEEEEEETTCHHHH--HHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTT
T ss_pred             chhhhhhhceeccccccccc--cccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCC
Confidence            57899999999999887432  223333   222  124579999999999965321 1112223333344556788999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      +|.|++++++.|.+...
T Consensus       146 ~~~~v~~~f~~l~~~i~  162 (168)
T d2gjsa1         146 LHHNVQALFEGVVRQIR  162 (168)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999988765443

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.5e-06  Score=72.94  Aligned_cols=86  Identities=9%  Similarity=0.088  Sum_probs=60.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH---HhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|.+++|+|+.++.+..  .+..++   .+...+.|+++|.||+||.......+-.. +........|.+||++|.
T Consensus        72 ~~~~~~~~ilv~d~~~~~Sf~--~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~-~~~~~~~~~~e~Sak~~~  148 (170)
T d1i2ma_          72 YYIQAQCAIIMFDVTSRVTYK--NVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNY  148 (170)
T ss_dssp             GTTTCCEEEEEEETTSGGGGT--THHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHH-HHSSCSSEEEEEBTTTTB
T ss_pred             hcccccchhhccccccccccc--hhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHH-HHHHcCCEEEEEeCCCCC
Confidence            578899999999999876432  233333   23346899999999999976543322222 223344556889999999


Q ss_pred             ChHHHHHHHHHH
Q 018454          286 GKGSLLSVLRQF  297 (355)
Q Consensus       286 Gi~~Ll~~L~q~  297 (355)
                      |+++++..|.+-
T Consensus       149 ~v~e~f~~l~~~  160 (170)
T d1i2ma_         149 NFEKPFLWLARK  160 (170)
T ss_dssp             TTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999877654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.3e-06  Score=73.64  Aligned_cols=89  Identities=17%  Similarity=0.152  Sum_probs=59.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHH---HHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~---L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|++|+|.|+.++.+.  ..+..+   +..  ...+.|+++|.||+||.... ....-...+...+....|.+||+
T Consensus        74 ~~~~~~~~ilvfd~t~~~s~--~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak  151 (172)
T d2g3ya1          74 CMQVGDAYLIVYSITDRASF--EKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAA  151 (172)
T ss_dssp             CCCCCSEEEEEEETTCHHHH--HHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred             cccccceeeeeecccccchh--hhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCC
Confidence            57899999999999876432  223333   222  22468999999999986432 11111233444445566789999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      +|.|++++++.|.+...
T Consensus       152 ~g~~i~~~f~~l~~~i~  168 (172)
T d2g3ya1         152 VQHNVKELFEGIVRQVR  168 (172)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999988765543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1e-06  Score=73.66  Aligned_cols=91  Identities=15%  Similarity=0.204  Sum_probs=59.7

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh---hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE---HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~---~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|++|+|+|+.++.+... ..+...+..   ...+.|++||.||+||.... +.....+.+.+.+....|.+||+
T Consensus        69 ~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak  148 (171)
T d2erxa1          69 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAK  148 (171)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred             ccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCC
Confidence            35678999999999988754322 222222222   22568999999999986432 22233344444444556789999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      +|.|++++++.|.+..
T Consensus       149 ~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         149 LNHNVKELFQELLNLE  164 (171)
T ss_dssp             TTBSHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999998887654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.18  E-value=2.1e-06  Score=71.11  Aligned_cols=91  Identities=19%  Similarity=0.107  Sum_probs=59.3

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh----hhCCceEEEee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS----KEYPSLAFHAS  280 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~----~~~p~~~f~vS  280 (355)
                      ..+..+|.+++|+|+.|......  ..+...+.. ...+.|+++|+||+||........-...+.    ...+..++.+|
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  144 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS  144 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             hhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEE
Confidence            46788999999999988643221  122222221 235789999999999965332222223222    11245578899


Q ss_pred             ecCCCChHHHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q~~  298 (355)
                      |++|.|++++++.|.+..
T Consensus       145 a~~g~gv~e~~~~l~~~i  162 (165)
T d1ksha_         145 AVTGEDLLPGIDWLLDDI  162 (165)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999876543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.7e-06  Score=72.83  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=59.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHH---HHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~---L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|++|+|.|..++.+.  ..+..+   +..  ...+.|+|||.||+||.... ....-...+...+....|.+||+
T Consensus        74 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak  151 (173)
T d2fn4a1          74 YMRAGHGFLLVFAINDRQSF--NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAK  151 (173)
T ss_dssp             HHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred             hhccceeeeeeccccccccc--chhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCC
Confidence            46679999999999887533  223333   222  13567999999999986431 11222333334444556789999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      +|.|++++++.|.+.+.
T Consensus       152 ~g~gv~e~f~~l~~~i~  168 (173)
T d2fn4a1         152 LRLNVDEAFEQLVRAVR  168 (173)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999998876654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.2e-06  Score=72.12  Aligned_cols=89  Identities=17%  Similarity=0.159  Sum_probs=58.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhH-------------HHHHHHHhhhCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWAT-------------KGWLRVLSKEYP  273 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-------------~~w~~~l~~~~p  273 (355)
                      .+..+|.+|+|+|+.++.+...  ..+...+....++.|++||.||+|+......             ......+.+.+.
T Consensus        70 ~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~  149 (177)
T d1kmqa_          70 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG  149 (177)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             hcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcC
Confidence            5788999999999988653211  1233334434467899999999999753321             111122222333


Q ss_pred             -ceEEEeeecCCCChHHHHHHHHHH
Q 018454          274 -SLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       274 -~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                       ...|.+||++|.|++++++.|.+.
T Consensus       150 ~~~~~E~SAkt~~gi~e~F~~i~~~  174 (177)
T d1kmqa_         150 AFGYMECSAKTKDGVREVFEMATRA  174 (177)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCcCHHHHHHHHHHH
Confidence             456779999999999999887654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.14  E-value=1.5e-06  Score=72.24  Aligned_cols=91  Identities=19%  Similarity=0.168  Sum_probs=60.2

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEe
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHA  279 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~v  279 (355)
                      ...+..+|.+++|+|+.++.....  ..+..++.. ...+.|++||+||+||..........+.+...    .....+.+
T Consensus        65 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~  144 (164)
T d1zd9a1          65 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSI  144 (164)
T ss_dssp             HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred             cccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEE
Confidence            346789999999999987643211  122222222 23578999999999986543333333433221    23456789


Q ss_pred             eecCCCChHHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q~  297 (355)
                      ||++|.|++++++.|.++
T Consensus       145 Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         145 SCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             CTTTCTTHHHHHHHHHHT
T ss_pred             eCcCCcCHHHHHHHHHHc
Confidence            999999999999988764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.1e-06  Score=71.11  Aligned_cols=89  Identities=16%  Similarity=0.135  Sum_probs=62.2

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      ..+..+|++|+|+|+.++....  .+.+++.   . ...+.|+++|.||+||.... ........+...+....|.+||+
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~--~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk  145 (164)
T d1yzqa1          68 SYIRDSAAAVVVYDITNVNSFQ--QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK  145 (164)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHhhccceEEEeeccccccchh--hhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCC
Confidence            3678999999999998875432  2233322   2 23568899999999996532 22233444445555667889999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      +|.|++++++.|.+.+
T Consensus       146 ~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         146 AGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             TCTTHHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHHhh
Confidence            9999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.6e-06  Score=72.47  Aligned_cols=87  Identities=17%  Similarity=0.097  Sum_probs=57.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhH--------------HHHHHHHhhh-
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWAT--------------KGWLRVLSKE-  271 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~--------------~~w~~~l~~~-  271 (355)
                      .+..+|++|+|+|+.++.+...  ..+...+.....+.|+++|.||+||.+....              ++.. .+.+. 
T Consensus        77 ~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~-~~a~~~  155 (185)
T d2atxa1          77 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ-KLAKEI  155 (185)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH-HHHHHH
T ss_pred             cccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHH-HHHHHc
Confidence            5778999999999998764221  2233344444467899999999999753211              1111 22222 


Q ss_pred             CCceEEEeeecCCCChHHHHHHHHH
Q 018454          272 YPSLAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       272 ~p~~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      .....+.+||++|.|++++++.|.+
T Consensus       156 ~~~~~~E~SAk~~~gv~e~F~~li~  180 (185)
T d2atxa1         156 GACCYVECSALTQKGLKTVFDEAII  180 (185)
T ss_dssp             TCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCCEEEEecCCCCcCHHHHHHHHHH
Confidence            2345577899999999999887643

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.6e-06  Score=71.59  Aligned_cols=88  Identities=13%  Similarity=0.032  Sum_probs=57.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|++|+|+|+.++.+... ..+...+.. ...+.|+++|.||+||.... ........+...+....+.+||++|.
T Consensus        73 ~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~  152 (175)
T d2f9la1          73 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST  152 (175)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred             HhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCc
Confidence            4688999999999998753221 122222222 23467999999999997542 12222233333445567889999999


Q ss_pred             ChHHHHHHHHH
Q 018454          286 GKGSLLSVLRQ  296 (355)
Q Consensus       286 Gi~~Ll~~L~q  296 (355)
                      |++++++.|.+
T Consensus       153 ~i~e~f~~l~~  163 (175)
T d2f9la1         153 NVEEAFKNILT  163 (175)
T ss_dssp             THHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999876543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.6e-06  Score=70.33  Aligned_cols=92  Identities=17%  Similarity=0.159  Sum_probs=59.5

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      ..+..+|++++|.|..++.+... ..+...+..  .....|+|+|.||+|+.... ....-...+.+.+....+.+||++
T Consensus        72 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  151 (171)
T d2erya1          72 QYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKI  151 (171)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             ccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCC
Confidence            45678999999999998754321 122222222  13468899999999986431 111122233334445567899999


Q ss_pred             CCChHHHHHHHHHHHh
Q 018454          284 SFGKGSLLSVLRQFAR  299 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~  299 (355)
                      |.|+++++..|.+.+.
T Consensus       152 ~~~i~e~f~~l~~~i~  167 (171)
T d2erya1         152 RMNVDQAFHELVRVIR  167 (171)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999998866553

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=2.2e-06  Score=70.94  Aligned_cols=87  Identities=18%  Similarity=0.160  Sum_probs=56.6

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      ..+..+|++|+|+|+.++..... ..+...+.+  ...+.|++||.||+||.... +..+....+.+.+....|.+||++
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt  150 (165)
T d1z06a1          71 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKN  150 (165)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSS
T ss_pred             eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEeccc
Confidence            35789999999999998754322 122222222  12468999999999996542 223333444445555678899986


Q ss_pred             ---CCChHHHHHHH
Q 018454          284 ---SFGKGSLLSVL  294 (355)
Q Consensus       284 ---~~Gi~~Ll~~L  294 (355)
                         +.|++++++.|
T Consensus       151 ~~~~~~V~e~F~~l  164 (165)
T d1z06a1         151 PNDNDHVEAIFMTL  164 (165)
T ss_dssp             GGGGSCHHHHHHHH
T ss_pred             CCcCcCHHHHHHHh
Confidence               45888887765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.10  E-value=6.5e-06  Score=68.32  Aligned_cols=90  Identities=13%  Similarity=0.086  Sum_probs=59.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHH-HHHH--hhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEeee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLE-RHLK--EHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHASI  281 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~-~~L~--~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~vSa  281 (355)
                      .+..++.+++|+|+.|.......... ....  ....+.|+++|+||+|+............+...    ....++.+||
T Consensus        79 ~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa  158 (177)
T d1zj6a1          79 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA  158 (177)
T ss_dssp             HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             hhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeC
Confidence            46678999999999876543221111 1111  123578999999999986543333333333221    3355788999


Q ss_pred             cCCCChHHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~  298 (355)
                      ++|.|+++++++|.+.+
T Consensus       159 ~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         159 LTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             TTTBTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=3.8e-06  Score=70.13  Aligned_cols=91  Identities=13%  Similarity=0.096  Sum_probs=58.5

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-----hcCCCcEEEEEeccCCCChh--hHHHHHHHHhhhCC-ceEE
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-----HCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEYP-SLAF  277 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~~p-~~~f  277 (355)
                      ...+..+|.+++|.|+.++..... ..+...+..     ...+.|+++|+||+||....  ......+.+...+. ...+
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~  149 (175)
T d1ky3a_          70 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLF  149 (175)
T ss_dssp             -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEE
T ss_pred             HHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEE
Confidence            346788999999999988753211 112222221     11367999999999997532  12223333444443 4467


Q ss_pred             EeeecCCCChHHHHHHHHHH
Q 018454          278 HASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      .+||++|.|++++++.|.+.
T Consensus       150 e~SA~~g~gv~e~f~~l~~~  169 (175)
T d1ky3a_         150 LTSAKNAINVDTAFEEIARS  169 (175)
T ss_dssp             EEBTTTTBSHHHHHHHHHHH
T ss_pred             EEeCCCCcCHHHHHHHHHHH
Confidence            79999999999998877543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1.9e-06  Score=82.96  Aligned_cols=56  Identities=25%  Similarity=0.143  Sum_probs=35.8

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCc----cccCCCCCeeE
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNV----ILFFPASVVWY  342 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~----~~vs~iPGtT~  342 (355)
                      ++.+..+.+.+.+.. .+..++.|+++|.||||||||||+|++...    +.+.++++||+
T Consensus        37 ~~~~~~~~i~~~l~~-~~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~   96 (400)
T d1tq4a_          37 NIQLTNSAISDALKE-IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM   96 (400)
T ss_dssp             CHHHHHHHHHHHHHH-HHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C
T ss_pred             CHHHHHHHHHHHHHh-cccCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCce
Confidence            455555555554442 234679999999999999999999998543    33444566773

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3e-06  Score=70.82  Aligned_cols=89  Identities=12%  Similarity=0.115  Sum_probs=59.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|.+|+|+|..++..... ..+...+.. ..++.|++||.||+||.... ...+....+........+.+||++|.
T Consensus        75 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~  154 (170)
T d1r2qa_          75 YYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM  154 (170)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred             HhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCC
Confidence            5688999999999887643211 122222222 33578999999999986432 22333444444555667889999999


Q ss_pred             ChHHHHHHHHHH
Q 018454          286 GKGSLLSVLRQF  297 (355)
Q Consensus       286 Gi~~Ll~~L~q~  297 (355)
                      |++++++.|.+.
T Consensus       155 ~V~e~f~~l~~~  166 (170)
T d1r2qa_         155 NVNEIFMAIAKK  166 (170)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CHHHHHHHHHHH
Confidence            999999987543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=9.1e-06  Score=68.64  Aligned_cols=89  Identities=16%  Similarity=0.211  Sum_probs=59.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|.+|+|+|+.++.+.  ..+..++..     ...+.|+++|.||+||..... ..+-...+.+.+....+.+||+
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak  161 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  161 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHhcCCEEEEEEeccccccc--eeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCC
Confidence            56899999999999876422  344455443     123467899999999954321 1112233334444557889999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 018454          283 KSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~~  299 (355)
                      +|.|++++++.|.+...
T Consensus       162 ~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         162 TGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             TTBTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999998876543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.02  E-value=2.6e-06  Score=70.88  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=33.9

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ++..+|.|||.||||||||||+|.+.+...+.+..|++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~   50 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN   50 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSS
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccccccee
Confidence            46689999999999999999999999888888888765

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.2e-05  Score=66.59  Aligned_cols=89  Identities=18%  Similarity=0.087  Sum_probs=61.4

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHH----HHHHHHhhhCC-ceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK----GWLRVLSKEYP-SLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~----~w~~~l~~~~p-~~~f~vSa~  282 (355)
                      ..+...+.++.+.|+..............+..  ...++++|+||+|++......    .+.+.+....+ ..++.+||+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~  171 (188)
T d1puia_          94 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSL  171 (188)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred             hhhhheeEEEEeecccccchhHHHHHHHHhhh--ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence            34556667777788777665544444444443  578899999999999865433    33334433333 356788999


Q ss_pred             CCCChHHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQFA  298 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~~  298 (355)
                      +|.|+++|++.|.+++
T Consensus       172 ~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         172 KKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998775

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=4e-06  Score=69.80  Aligned_cols=88  Identities=13%  Similarity=0.128  Sum_probs=59.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .+..+|.+|+|+|+.++...  ..+..++   .. ...+.|+++|+||+||.... ....-...+...+....+.+||++
T Consensus        73 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~  150 (167)
T d1z0ja1          73 YYRGSAAAIIVYDITKEETF--STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN  150 (167)
T ss_dssp             HHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             HHhhccceEEEeeechhhhh--hhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCC
Confidence            56789999999999876533  2333332   22 23578999999999996432 222223334444556678899999


Q ss_pred             CCChHHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQFA  298 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~  298 (355)
                      |.|+++++..|.+.+
T Consensus       151 ~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         151 AININELFIEISRRI  165 (167)
T ss_dssp             TBSHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999998876543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.7e-06  Score=70.77  Aligned_cols=87  Identities=10%  Similarity=-0.003  Sum_probs=57.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHH---HHhh--cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~---L~~~--~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .+..+|.+|+|.|+.++.+..  .+..+   +...  ..+.|++||.||+||..... ..+-...+.+.+....+.+||+
T Consensus        72 ~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak  149 (167)
T d1xtqa1          72 YSIDINGYILVYSVTSIKSFE--VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK  149 (167)
T ss_dssp             GTSSCCEEEEEEETTCHHHHH--HHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred             hhhhhhhhhhhcccchhhhhh--hhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecC
Confidence            577899999999999875432  23332   2221  24689999999999854321 1111222333344456788999


Q ss_pred             CCCChHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQF  297 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~  297 (355)
                      +|.|++++++.|.+.
T Consensus       150 ~~~~v~~~f~~li~~  164 (167)
T d1xtqa1         150 ENQTAVDVFRRIILE  164 (167)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999998876543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=6e-06  Score=69.76  Aligned_cols=89  Identities=15%  Similarity=0.110  Sum_probs=58.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-----cCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-----CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-----~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa  281 (355)
                      .+..+|++++|+|..++..... ..+...+...     ..+.|+++|+||+||...... +..............+.+||
T Consensus        71 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  150 (184)
T d1vg8a_          71 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA  150 (184)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred             cccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcC
Confidence            5788999999999987543221 1122222221     235799999999998764332 23333333444455678999


Q ss_pred             cCCCChHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQF  297 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~  297 (355)
                      ++|.|++++++.|.+.
T Consensus       151 k~~~gI~e~f~~l~~~  166 (184)
T d1vg8a_         151 KEAINVEQAFQTIARN  166 (184)
T ss_dssp             TTTBSHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHH
Confidence            9999999999877544

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=5.5e-06  Score=69.14  Aligned_cols=90  Identities=14%  Similarity=0.177  Sum_probs=59.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|.||+|+..... .......+.+......+.+||++|.
T Consensus        74 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~  153 (169)
T d3raba_          74 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNI  153 (169)
T ss_dssp             TTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred             HHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCc
Confidence            5789999999999988643321 122222222 335678889999999864321 1222333433334557889999999


Q ss_pred             ChHHHHHHHHHHH
Q 018454          286 GKGSLLSVLRQFA  298 (355)
Q Consensus       286 Gi~~Ll~~L~q~~  298 (355)
                      |++++++.|.+..
T Consensus       154 gv~e~f~~l~~~i  166 (169)
T d3raba_         154 NVKQTFERLVDVI  166 (169)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999887654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.00  E-value=1.8e-06  Score=71.62  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=28.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ++..+|.+||.||||||||||+|.+.....+.|.++.+
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~   48 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT   48 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccc
Confidence            56789999999999999999999998888777777765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.00  E-value=3.7e-06  Score=70.42  Aligned_cols=87  Identities=10%  Similarity=0.049  Sum_probs=56.2

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHH---HHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~---L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ..+..+|.+|+|.|..++...  ..+..+   +..  ...+.|+++|+||+||..... ..+-...+........|.+||
T Consensus        71 ~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  148 (168)
T d1u8za_          71 NYFRSGEGFLCVFSITEMESF--AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSA  148 (168)
T ss_dssp             HHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred             hcccccceeEEEeeccchhhh--hhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcC
Confidence            356789999999999886543  223333   222  135789999999999853211 111122222333445678999


Q ss_pred             cCCCChHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQ  296 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q  296 (355)
                      ++|.|++++++.|.+
T Consensus       149 k~g~gv~e~f~~l~~  163 (168)
T d1u8za_         149 KTRANVDKVFFDLMR  163 (168)
T ss_dssp             TTCTTHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHH
Confidence            999999999886644

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3e-06  Score=71.78  Aligned_cols=89  Identities=17%  Similarity=0.147  Sum_probs=57.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhH-HHH------------HHHHhhh-C
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWAT-KGW------------LRVLSKE-Y  272 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-~~w------------~~~l~~~-~  272 (355)
                      .+..+|++|+|+|+.++.+...  ..+...+.....+.|++||.||+||...... ...            ...+.+. .
T Consensus        73 ~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  152 (183)
T d1mh1a_          73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  152 (183)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             cccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcC
Confidence            5678999999999988754321  1233334434457899999999998654221 110            0111122 2


Q ss_pred             CceEEEeeecCCCChHHHHHHHHHH
Q 018454          273 PSLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       273 p~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                      ....|.+||++|.|++++++.|.+.
T Consensus       153 ~~~~~E~SAk~~~~V~e~F~~l~~~  177 (183)
T d1mh1a_         153 AVKYLECSALTQRGLKTVFDEAIRA  177 (183)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCcCHHHHHHHHHHH
Confidence            3556789999999999998877543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.9e-06  Score=69.21  Aligned_cols=88  Identities=10%  Similarity=0.057  Sum_probs=56.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      ....+|++|+|+|..++..... ..+...+.. ...+.|++||.||+|+.... ....-...+.+......+.+||++|.
T Consensus        72 ~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~  151 (173)
T d2a5ja1          72 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTAC  151 (173)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred             HhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCC
Confidence            4578899999999998754321 122222222 23578999999999975321 11112222333334556789999999


Q ss_pred             ChHHHHHHHHH
Q 018454          286 GKGSLLSVLRQ  296 (355)
Q Consensus       286 Gi~~Ll~~L~q  296 (355)
                      |+++++..|.+
T Consensus       152 ~V~e~f~~i~~  162 (173)
T d2a5ja1         152 NVEEAFINTAK  162 (173)
T ss_dssp             THHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999886654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.3e-06  Score=71.20  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=56.4

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeee
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      .....+|++++|.|+.++....  .+..+.   ..  ...+.|++||+||+||.... ....-...+.+.+....|.+||
T Consensus        70 ~~~~~a~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  147 (167)
T d1kaoa_          70 LYIKNGQGFILVYSLVNQQSFQ--DIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA  147 (167)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECT
T ss_pred             HHhhcccceeeeeeecchhhhh--hhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECC
Confidence            3567899999999998765332  233332   21  23568999999999986431 1111122233333345688999


Q ss_pred             cCCCChHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQ  296 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q  296 (355)
                      ++|.|++++++.|.+
T Consensus       148 k~g~~i~e~f~~i~~  162 (167)
T d1kaoa_         148 KSKTMVDELFAEIVR  162 (167)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHH
Confidence            999999999887654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=9.4e-06  Score=67.86  Aligned_cols=90  Identities=16%  Similarity=0.170  Sum_probs=56.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|++|+|+|+.|+.+... ..+...+.+  ...+.|+|+|.||+||..... ..+-...+.+.+....|.+||+++
T Consensus        72 ~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~  151 (169)
T d1x1ra1          72 YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDP  151 (169)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSS
T ss_pred             hhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCC
Confidence            5678999999999998754322 122222222  224789999999999865421 111122233333345678999876


Q ss_pred             -CChHHHHHHHHHHH
Q 018454          285 -FGKGSLLSVLRQFA  298 (355)
Q Consensus       285 -~Gi~~Ll~~L~q~~  298 (355)
                       .|++++++.|.+.+
T Consensus       152 ~~nV~~~F~~l~~~i  166 (169)
T d1x1ra1         152 PLNVDKTFHDLVRVI  166 (169)
T ss_dssp             CBSHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence             49999988776543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=7.3e-06  Score=68.48  Aligned_cols=89  Identities=15%  Similarity=-0.005  Sum_probs=60.2

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ...+..+|++|+|+|..++....  .+..++.   . ...+.|+++|.||+|+.+... .......+........+.+||
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  149 (174)
T d2bmea1          72 RSYYRGAAGALLVYDITSRETYN--ALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA  149 (174)
T ss_dssp             HTTSTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             HHHhhhCCEEEEEEecccchhHH--HHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeC
Confidence            34678999999999998764322  2222222   1 235789999999999865322 223333444445556788999


Q ss_pred             cCCCChHHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQF  297 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~  297 (355)
                      ++|.|+++++..|.+.
T Consensus       150 k~~~gi~e~f~~l~~~  165 (174)
T d2bmea1         150 LTGENVEEAFVQCARK  165 (174)
T ss_dssp             TTCTTHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHH
Confidence            9999999998876544

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=5.8e-06  Score=68.75  Aligned_cols=87  Identities=16%  Similarity=0.143  Sum_probs=58.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .+..+|++|+|.|+.++.+.  ..+..++.   . .....+++||.||+||.... +...-...+.+.+....+.+||++
T Consensus        72 ~~~~~~~~i~v~d~~~~~Sf--~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~  149 (167)
T d1z08a1          72 YYRDSNGAILVYDITDEDSF--QKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQ  149 (167)
T ss_dssp             SSTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred             hccCCceeEEEEeCCchhHH--HhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCC
Confidence            57889999999999887532  23333332   1 23567889999999986432 111122333344455678899999


Q ss_pred             CCChHHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQF  297 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~  297 (355)
                      |.|++++++.|.+.
T Consensus       150 ~~~v~e~F~~l~~~  163 (167)
T d1z08a1         150 NKGIEELFLDLCKR  163 (167)
T ss_dssp             TBSHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999999877644

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=6.4e-06  Score=69.00  Aligned_cols=89  Identities=15%  Similarity=0.168  Sum_probs=55.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHH---HHh-hcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKE-HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~---L~~-~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .+..+|++|+|+|+.++...  ..+..+   +.. ...+.|+++|.||+|+.+.... ..-...+........+.+||++
T Consensus        75 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  152 (173)
T d2fu5c1          75 YYRGAMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKA  152 (173)
T ss_dssp             TTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC--
T ss_pred             hccCCCEEEEEEECCChhhH--HHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCC
Confidence            47889999999999987532  223322   222 3456899999999999764221 1111222233445678899999


Q ss_pred             CCChHHHHHHHHHHHh
Q 018454          284 SFGKGSLLSVLRQFAR  299 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q~~~  299 (355)
                      |.|++++++.|.+.+.
T Consensus       153 g~gv~e~f~~l~~~i~  168 (173)
T d2fu5c1         153 NINVENAFFTLARDIK  168 (173)
T ss_dssp             -CCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999988876554

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.1e-05  Score=66.98  Aligned_cols=86  Identities=16%  Similarity=0.155  Sum_probs=56.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh--hcCCCcEEEEEeccCCCChhhH-HHHHHHHhhh-CCceEEEeee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KE--HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKE-YPSLAFHASI  281 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~--~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~-~p~~~f~vSa  281 (355)
                      .+..+|++|+|+|+.++.+..  .+..++   .+  ..++.|+|||.||+||...... ..-...+.+. .....|.+||
T Consensus        71 ~~~~~~~~ilv~d~~~~~sf~--~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (167)
T d1c1ya_          71 YMKNGQGFALVYSITAQSTFN--DLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA  148 (167)
T ss_dssp             HHHHCSEEEEEEETTCHHHHH--THHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred             cccccceeEEeeeccchhhhH--hHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcC
Confidence            567899999999999875432  233332   22  2356799999999999653221 1111222222 2345677899


Q ss_pred             cCCCChHHHHHHHHH
Q 018454          282 NKSFGKGSLLSVLRQ  296 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q  296 (355)
                      ++|.|++++++.|.+
T Consensus       149 k~g~gv~e~F~~l~~  163 (167)
T d1c1ya_         149 KSKINVNEIFYDLVR  163 (167)
T ss_dssp             TTTBSHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHH
Confidence            999999999887754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.2e-05  Score=67.30  Aligned_cols=90  Identities=11%  Similarity=0.075  Sum_probs=57.3

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhh-hCCceEEEe
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSK-EYPSLAFHA  279 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~-~~p~~~f~v  279 (355)
                      ...+..+|+++++.|..++.+... ..+.+.+..     ...+.|++||.||+||.......+-...+.. ......+.+
T Consensus        73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~  152 (174)
T d1wmsa_          73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFET  152 (174)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEEC
T ss_pred             hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEE
Confidence            346789999999999987653221 112222221     1245799999999999653322222222332 233456789


Q ss_pred             eecCCCChHHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~q  296 (355)
                      ||+++.|++++++.|.+
T Consensus       153 Sak~~~gI~e~f~~l~~  169 (174)
T d1wmsa_         153 SAKDATNVAAAFEEAVR  169 (174)
T ss_dssp             CTTTCTTHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHH
Confidence            99999999999887643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=7.8e-06  Score=68.21  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=56.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|++|+|+|..++..... ..+...+.. ...+.|+|||.||+|+..... ...-...+.+......+.+||++|.
T Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~  153 (171)
T d2ew1a1          74 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESD  153 (171)
T ss_dssp             GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred             HHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCC
Confidence            5789999999999988643211 122222322 234678999999999864321 1122233333333456789999999


Q ss_pred             ChHHHHHHH-HHHH
Q 018454          286 GKGSLLSVL-RQFA  298 (355)
Q Consensus       286 Gi~~Ll~~L-~q~~  298 (355)
                      |+++++..| .++.
T Consensus       154 gV~e~f~~l~~~l~  167 (171)
T d2ew1a1         154 NVEKLFLDLACRLI  167 (171)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            999987654 4443

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.89  E-value=3.8e-06  Score=70.10  Aligned_cols=38  Identities=18%  Similarity=0.393  Sum_probs=34.6

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .+.++|.+||.||||||||||+|.+.....+.|.+|++
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~   51 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN   51 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeee
Confidence            46799999999999999999999999888888888876

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=8.7e-06  Score=67.93  Aligned_cols=89  Identities=21%  Similarity=0.133  Sum_probs=57.1

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch-HHHHHHHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH-HLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS  284 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~-~l~~~L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~  284 (355)
                      .+..+|.+++|.|+.++.+.... .+...+..  ...+.|+++|.||+||.... +..+....+.+.+....|.+||++|
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg  148 (168)
T d2atva1          69 HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTG  148 (168)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTC
T ss_pred             hhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccC
Confidence            46679999999999987543221 11122221  23578999999999985432 2222223333344455678899999


Q ss_pred             CC-hHHHHHHHHHH
Q 018454          285 FG-KGSLLSVLRQF  297 (355)
Q Consensus       285 ~G-i~~Ll~~L~q~  297 (355)
                      .| +++++..|.+.
T Consensus       149 ~gnV~e~F~~l~~~  162 (168)
T d2atva1         149 EGNITEIFYELCRE  162 (168)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH
Confidence            85 99988766543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.5e-05  Score=66.07  Aligned_cols=88  Identities=14%  Similarity=0.045  Sum_probs=57.2

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|++|+|+|..++.+... ..+...+.. ...+.|+++|.||+||.+.... ..-...+.+......+.+||++|.
T Consensus        73 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~  152 (166)
T d1z0fa1          73 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGE  152 (166)
T ss_dssp             HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred             HhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            4678999999999987643211 122222322 3356789999999998543321 122233334444567889999999


Q ss_pred             ChHHHHHHHHH
Q 018454          286 GKGSLLSVLRQ  296 (355)
Q Consensus       286 Gi~~Ll~~L~q  296 (355)
                      |+++++..|.+
T Consensus       153 ~v~e~f~~i~~  163 (166)
T d1z0fa1         153 NVEDAFLEAAK  163 (166)
T ss_dssp             THHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=1.4e-05  Score=66.53  Aligned_cols=89  Identities=17%  Similarity=0.183  Sum_probs=61.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCC-ceEEEeeecCCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYP-SLAFHASINKSFG  286 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p-~~~f~vSa~~~~G  286 (355)
                      ....+|+++++.|+.+..... ..+...+.+  ...|.++|+||+|++... ......+.+...+. ..+|.+||++|.|
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~~-~~~~~~l~~--~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g  158 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPDD-EMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  158 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHHH-HHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             chhhcceeEEEEecCccchhH-HHHHHHhhh--ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence            346778999999987654332 233333333  567899999999988643 33344444444444 4678899999999


Q ss_pred             hHHHHHHHHHHHhh
Q 018454          287 KGSLLSVLRQFARL  300 (355)
Q Consensus       287 i~~Ll~~L~q~~~~  300 (355)
                      +++|++.|.+++++
T Consensus       159 i~~L~~~i~~~lpe  172 (179)
T d1egaa1         159 VDTIAAIVRKHLPE  172 (179)
T ss_dssp             HHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999887753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.9e-05  Score=67.16  Aligned_cols=90  Identities=14%  Similarity=0.127  Sum_probs=58.3

Q ss_pred             hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhH-------------HHHHHHHhhh-C
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-------------KGWLRVLSKE-Y  272 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-------------~~w~~~l~~~-~  272 (355)
                      .+..+|++|+|+|+.++.+....  .+...+.....+.|+++|.||+||.+....             .+....+... .
T Consensus        71 ~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (191)
T d2ngra_          71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK  150 (191)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred             cccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcC
Confidence            56789999999999987532111  122333333457899999999998643211             1122223323 2


Q ss_pred             CceEEEeeecCCCChHHHHHHHHHHH
Q 018454          273 PSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       273 p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                      ....+.+||+++.|++++++.|....
T Consensus       151 ~~~~~e~SAk~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         151 AVKYVECSALTQKGLKNVFDEAILAA  176 (191)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            34567889999999999988765543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.80  E-value=2.6e-05  Score=69.01  Aligned_cols=89  Identities=18%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCC-CcEEEEEeccCCCCh--hhHH----HHHHHH
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKH-KHMILLLNKCDLVPA--WATK----GWLRVL  268 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~-k~vILVlNK~DLvp~--~~~~----~w~~~l  268 (355)
                      ||| ..+...+...+..+|++|+||||.+.......+....+..  .+ +++|+++||+|++..  ....    ....++
T Consensus        97 PGH-~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~--~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~  173 (222)
T d1zunb3          97 PGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--LGIKHIVVAINKMDLNGFDERVFESIKADYLKFA  173 (222)
T ss_dssp             CCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHH
T ss_pred             cch-hhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHH--cCCCEEEEEEEccccccccceehhhhHHHHhhhh
Confidence            555 3456667778899999999999998766554444444433  45 568999999999862  2222    222233


Q ss_pred             hhh-C-C--ceEEEeeecCCCCh
Q 018454          269 SKE-Y-P--SLAFHASINKSFGK  287 (355)
Q Consensus       269 ~~~-~-p--~~~f~vSa~~~~Gi  287 (355)
                      ... + +  ..++++||.+|.|+
T Consensus       174 ~~~~~~~~~i~~IPiSA~~G~ni  196 (222)
T d1zunb3         174 EGIAFKPTTMAFVPMSALKGDNV  196 (222)
T ss_dssp             HTTTCCCSEEEEEECCTTTCTTT
T ss_pred             HhhccCCCceEEEEEEcccCccC
Confidence            322 1 1  23468899999887

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.2e-05  Score=65.85  Aligned_cols=86  Identities=17%  Similarity=0.084  Sum_probs=60.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK  283 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~  283 (355)
                      .+..+|++|+|+|+.++...  ..+..++..     .....+++++.||.|+........-...+.+.+....+.+||++
T Consensus        76 ~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~t  153 (177)
T d1x3sa1          76 YYRGAQGVILVYDVTRRDTF--VKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKT  153 (177)
T ss_dssp             HHTTCCEEEEEEETTCHHHH--HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             HHhcCCEEEEEEECCCcccc--ccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCC
Confidence            56789999999999876432  223333332     13457889999999987655433333445555566778899999


Q ss_pred             CCChHHHHHHHHH
Q 018454          284 SFGKGSLLSVLRQ  296 (355)
Q Consensus       284 ~~Gi~~Ll~~L~q  296 (355)
                      |.|++++++.|.+
T Consensus       154 g~gv~e~f~~l~~  166 (177)
T d1x3sa1         154 CDGVQCAFEELVE  166 (177)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999986644

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=1.9e-05  Score=65.38  Aligned_cols=91  Identities=15%  Similarity=0.136  Sum_probs=62.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFG  286 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~G  286 (355)
                      .+..+|.+|+|+|+.++..... ..+...+.. .....+++++.||.|+.+.....+-...+...+....+.+||+++.|
T Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  150 (166)
T d1g16a_          71 YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDN  150 (166)
T ss_dssp             HHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred             HHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCC
Confidence            5788999999999998753322 111122222 33567889999999997654433334444444556678899999999


Q ss_pred             hHHHHHHHHHHHh
Q 018454          287 KGSLLSVLRQFAR  299 (355)
Q Consensus       287 i~~Ll~~L~q~~~  299 (355)
                      ++++++.|.+.+.
T Consensus       151 v~e~f~~l~~~i~  163 (166)
T d1g16a_         151 VNEIFFTLAKLIQ  163 (166)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=1.8e-05  Score=66.90  Aligned_cols=89  Identities=17%  Similarity=0.167  Sum_probs=56.9

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhh--------------HHHHHHHHhhhC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWA--------------TKGWLRVLSKEY  272 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~--------------~~~w~~~l~~~~  272 (355)
                      .+..+|++|+|.|+.++.+...  ..+...+.....+.|+++|.||+|+.....              .+++.....+..
T Consensus        70 ~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~  149 (179)
T d1m7ba_          70 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG  149 (179)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred             hhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhC
Confidence            5778999999999988753221  123333333446899999999999854211              112222222223


Q ss_pred             CceEEEeeecCCC-ChHHHHHHHHHH
Q 018454          273 PSLAFHASINKSF-GKGSLLSVLRQF  297 (355)
Q Consensus       273 p~~~f~vSa~~~~-Gi~~Ll~~L~q~  297 (355)
                      ....+.+||+++. |++++++.+...
T Consensus       150 ~~~y~E~SAk~~~n~i~~~F~~~~~~  175 (179)
T d1m7ba_         150 AATYIECSALQSENSVRDIFHVATLA  175 (179)
T ss_dssp             CSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence            3455678999998 699999877644

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=2.7e-05  Score=66.42  Aligned_cols=90  Identities=13%  Similarity=0.093  Sum_probs=58.0

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCC
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSF  285 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~  285 (355)
                      .+..+|.+|+|+|+.++..... ..+...+.. ...+.|+++|.||+|+..... ...-...+........+.+||++|.
T Consensus        75 ~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~  154 (194)
T d2bcgy1          75 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDST  154 (194)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCT
T ss_pred             HhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCc
Confidence            5688999999999987643221 112222322 335689999999999975322 1111122222334456789999999


Q ss_pred             ChHHHHHHHHHHH
Q 018454          286 GKGSLLSVLRQFA  298 (355)
Q Consensus       286 Gi~~Ll~~L~q~~  298 (355)
                      |++++++.|.+.+
T Consensus       155 gi~e~f~~l~~~i  167 (194)
T d2bcgy1         155 NVEDAFLTMARQI  167 (194)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9999988776544

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.74  E-value=2.3e-05  Score=68.31  Aligned_cols=56  Identities=14%  Similarity=0.141  Sum_probs=43.4

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCCh
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPA  258 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~  258 (355)
                      .+..++...+..+|++|+|+||.+...........++..  .+.| +|+++||+|+++.
T Consensus        79 df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~--~gi~~iiv~iNK~D~~~~  135 (204)
T d2c78a3          79 DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDD  135 (204)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCC
T ss_pred             hhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEEecccCCC
Confidence            355667788999999999999998877666566666654  4655 6778999999864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.72  E-value=1.3e-05  Score=67.38  Aligned_cols=41  Identities=15%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             hccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          301 KSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       301 ~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ...++.++|.+||.||||||||||.|.......+.|..|..
T Consensus        12 ~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~   52 (182)
T d1moza_          12 WGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN   52 (182)
T ss_dssp             TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC
T ss_pred             hCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceE
Confidence            35567899999999999999999999988877777877765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.71  E-value=5.4e-05  Score=60.94  Aligned_cols=91  Identities=18%  Similarity=0.137  Sum_probs=58.7

Q ss_pred             HHhhhcCCCEEEEEecCCCCCCCcch--HHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh----hhCCceEEE
Q 018454          206 LYKVIDSSDVVVQVLDARDPQGTRCH--HLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS----KEYPSLAFH  278 (355)
Q Consensus       206 l~kvi~~sDvVL~VvDardp~~s~~~--~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~----~~~p~~~f~  278 (355)
                      .......+|.+++++|..++......  .+.+.+.. .....|+++|.||+|+.......+......    ......++.
T Consensus        61 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~  140 (160)
T d1r8sa_          61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA  140 (160)
T ss_dssp             HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred             hhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEE
Confidence            34467889999999999887543221  11222221 234688999999999876433222222211    112345678


Q ss_pred             eeecCCCChHHHHHHHHH
Q 018454          279 ASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       279 vSa~~~~Gi~~Ll~~L~q  296 (355)
                      +||++|.|+++++++|.+
T Consensus       141 ~SAktg~gi~e~~~~l~~  158 (160)
T d1r8sa_         141 TCATSGDGLYEGLDWLSN  158 (160)
T ss_dssp             CBTTTTBTHHHHHHHHHH
T ss_pred             eECCCCCCHHHHHHHHHh
Confidence            999999999999998864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=4.7e-05  Score=63.19  Aligned_cols=88  Identities=14%  Similarity=0.131  Sum_probs=58.3

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHH----HhhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL----KEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN  282 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L----~~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~  282 (355)
                      .....+|++++|+|..++....  .+..+.    .......++++|.||+|+..... ..+-...+.+......+.+||+
T Consensus        75 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak  152 (170)
T d2g6ba1          75 AYYRDAHALLLLYDVTNKASFD--NIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK  152 (170)
T ss_dssp             CCGGGCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HhhcCCceeEEEecCCcccchh--hhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCC
Confidence            3568899999999998765332  222222    22234678999999999876422 1122223333344567889999


Q ss_pred             CCCChHHHHHHHHHH
Q 018454          283 KSFGKGSLLSVLRQF  297 (355)
Q Consensus       283 ~~~Gi~~Ll~~L~q~  297 (355)
                      +|.|++++++.|.+-
T Consensus       153 ~g~gi~e~f~~l~~~  167 (170)
T d2g6ba1         153 TGLNVDLAFTAIAKE  167 (170)
T ss_dssp             TCTTHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHH
Confidence            999999998887643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.62  E-value=0.00016  Score=58.30  Aligned_cols=91  Identities=20%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchH--HHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEeee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHH--LERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHASI  281 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~--l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~vSa  281 (355)
                      .....+.+++++|..+........  +...+.. .....++++|.||+|+............+...    ....+|.+||
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA  148 (169)
T d1upta_          69 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSA  148 (169)
T ss_dssp             GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCT
T ss_pred             hhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence            567789999999998765432211  1111111 23567899999999998654333333333222    2345688999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 018454          282 NKSFGKGSLLSVLRQFAR  299 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~  299 (355)
                      ++|.|++++++.|.+.+.
T Consensus       149 ~~g~gv~e~~~~l~~~l~  166 (169)
T d1upta_         149 TKGTGLDEAMEWLVETLK  166 (169)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999877654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=2.3e-05  Score=65.07  Aligned_cols=86  Identities=19%  Similarity=0.173  Sum_probs=57.6

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcCCCcEEEEEeccCCCCh----hhHHHHHHHHhhhCCceEEEee
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPA----WATKGWLRVLSKEYPSLAFHAS  280 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~~k~vILVlNK~DLvp~----~~~~~w~~~l~~~~p~~~f~vS  280 (355)
                      .+..+|.+|+|+|..++....  .+..+..   . .....++++|.||+|+...    .........+.+......+.+|
T Consensus        72 ~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~S  149 (170)
T d1ek0a_          72 YYRNAQAALVVYDVTKPQSFI--KARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETS  149 (170)
T ss_dssp             HHTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred             HHhccceEEEEEeCCcccchh--hhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEec
Confidence            678999999999999875432  2332322   1 2356889999999998542    1112222333333445668899


Q ss_pred             ecCCCChHHHHHHHHH
Q 018454          281 INKSFGKGSLLSVLRQ  296 (355)
Q Consensus       281 a~~~~Gi~~Ll~~L~q  296 (355)
                      |++|.|+++++..|.+
T Consensus       150 ak~g~gV~e~F~~i~~  165 (170)
T d1ek0a_         150 AKTGENVNDVFLGIGE  165 (170)
T ss_dssp             TTTCTTHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHH
Confidence            9999999999988753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=6.2e-05  Score=60.31  Aligned_cols=88  Identities=22%  Similarity=0.152  Sum_probs=56.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchH-HHHHHHh--hcCCCcEEEEEeccCCCChhhHHHHHHHHhh-----------hCCc
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHH-LERHLKE--HCKHKHMILLLNKCDLVPAWATKGWLRVLSK-----------EYPS  274 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~-l~~~L~~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~-----------~~p~  274 (355)
                      ....++.+++++|..++....... +......  ...+.|+++++||.|+..........+.+..           ..+.
T Consensus        64 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  143 (166)
T d2qtvb1          64 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPV  143 (166)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCE
T ss_pred             hhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCC
Confidence            567789999999998764322111 1111111  2356889999999998654333333333321           1234


Q ss_pred             eEEEeeecCCCChHHHHHHHHH
Q 018454          275 LAFHASINKSFGKGSLLSVLRQ  296 (355)
Q Consensus       275 ~~f~vSa~~~~Gi~~Ll~~L~q  296 (355)
                      .+|.+||++|.|+++++++|.+
T Consensus       144 ~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         144 EVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEEBTTTTBSHHHHHHHHTT
T ss_pred             EEEEeeCCCCCCHHHHHHHHhC
Confidence            4688999999999999999865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.53  E-value=2.9e-05  Score=64.76  Aligned_cols=38  Identities=13%  Similarity=0.307  Sum_probs=32.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      ++.++|.+||.||||||||||+|.........+..|.+
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~   47 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN   47 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeee
Confidence            46799999999999999999999987777766666665

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.44  E-value=0.00014  Score=59.62  Aligned_cols=90  Identities=19%  Similarity=0.210  Sum_probs=57.5

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchH--HHHHHH-hhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-------------
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHH--LERHLK-EHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-------------  271 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~--l~~~L~-~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-------------  271 (355)
                      ......+.+++++|+.++.......  +..... ....+.|++++.||.|+..........+.+...             
T Consensus        76 ~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  155 (186)
T d1f6ba_          76 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE  155 (186)
T ss_dssp             GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTT
T ss_pred             hhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHH
Confidence            3677889999999998765432211  111111 123579999999999986533222223332211             


Q ss_pred             ---CCceEEEeeecCCCChHHHHHHHHHH
Q 018454          272 ---YPSLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       272 ---~p~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                         .+..++.+||++|.|+++++++|.++
T Consensus       156 ~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         156 LNARPLEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             CCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             hhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence               12346789999999999999988754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.36  E-value=0.00022  Score=61.55  Aligned_cols=86  Identities=16%  Similarity=0.078  Sum_probs=53.2

Q ss_pred             CCCEEEEEecCCCCCCCcch---HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHH--------------------
Q 018454          212 SSDVVVQVLDARDPQGTRCH---HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL--------------------  268 (355)
Q Consensus       212 ~sDvVL~VvDardp~~s~~~---~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l--------------------  268 (355)
                      ..+.+++|+|+.........   .+........-..|.++|+||+|+++......+....                    
T Consensus       123 ~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (244)
T d1yrba1         123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLM  202 (244)
T ss_dssp             SSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHH
T ss_pred             cCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            56789999998754332111   1111111111357899999999999865443332211                    


Q ss_pred             --------hhhC-CceEEEeeecCCCChHHHHHHHHHH
Q 018454          269 --------SKEY-PSLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       269 --------~~~~-p~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                              ...+ ...++.+||.+|.|+++|+..|.+.
T Consensus       203 ~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         203 AYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence                    0111 2346778999999999999999764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.32  E-value=0.00029  Score=63.90  Aligned_cols=58  Identities=12%  Similarity=0.108  Sum_probs=46.6

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      ||| ..+..++...+.-+|.+|+|+||.+.....-..+.+++.+  .++|.++++||+|..
T Consensus        75 PGh-~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~--~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          75 PGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             CCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             Cch-hhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhh--ccccccccccccccc
Confidence            344 3466677889999999999999999887766667766665  689999999999974

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00041  Score=58.17  Aligned_cols=87  Identities=10%  Similarity=0.093  Sum_probs=52.7

Q ss_pred             hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh----hcCCCcEEEEEeccCCCChh---hHHHHHHHH-hhhCCceEEEe
Q 018454          209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE----HCKHKHMILLLNKCDLVPAW---ATKGWLRVL-SKEYPSLAFHA  279 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~----~~~~k~vILVlNK~DLvp~~---~~~~w~~~l-~~~~p~~~f~v  279 (355)
                      .+..+|++|+|.|..++.+... ..+...+..    ...+.|+++|+||.|+....   ....-...+ ...+....+.+
T Consensus        67 ~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~  146 (175)
T d2bmja1          67 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYET  146 (175)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEE
T ss_pred             cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEe
Confidence            3567899999999988753221 122233322    12346899999999974321   111111222 23344556788


Q ss_pred             eecCCCChHHHHHHHH
Q 018454          280 SINKSFGKGSLLSVLR  295 (355)
Q Consensus       280 Sa~~~~Gi~~Ll~~L~  295 (355)
                      ||+++.|+++++..|.
T Consensus       147 SAk~~~~v~~~F~~l~  162 (175)
T d2bmja1         147 CATYGLNVDRVFQEVA  162 (175)
T ss_dssp             BTTTTBTHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHHH
Confidence            9999999999877554

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.18  E-value=0.00022  Score=64.86  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=25.7

Q ss_pred             EEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW  341 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT  341 (355)
                      .|+|||-.++|||||||+|+|...+.++..|-|.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~   59 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTR   59 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCCCCC-------
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCCCCCCCCcccc
Confidence            5899999999999999999999988888888764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.16  E-value=0.00026  Score=63.96  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=30.0

Q ss_pred             EEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKNVILFFPASVV  340 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt  340 (355)
                      .|.|||--++|||||||+|++...+.+++.|-|
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T   60 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT   60 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccc
Confidence            578999999999999999999998888888855

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00021  Score=66.66  Aligned_cols=48  Identities=17%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             HHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc------cCccccCCCCCe
Q 018454          291 LSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT------KNVILFFPASVV  340 (355)
Q Consensus       291 l~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~------~~~~~vs~iPGt  340 (355)
                      .++|.++.+.  ..+...||+.|.||||||||||+|..      .+++.++.-|.+
T Consensus        41 ~~ll~~~~~~--~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss   94 (327)
T d2p67a1          41 TQLLDAIMPY--CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS   94 (327)
T ss_dssp             HHHHHHHGGG--CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             HHHHHHhhhc--cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCce
Confidence            3444444432  24678999999999999999999973      455444444443

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00071  Score=57.43  Aligned_cols=51  Identities=22%  Similarity=0.166  Sum_probs=33.0

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc---hHHHHHHHh---hcCCCcEEEEEeccCCCC
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC---HHLERHLKE---HCKHKHMILLLNKCDLVP  257 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~---~~l~~~L~~---~~~~k~vILVlNK~DLvp  257 (355)
                      ...+..+|.+++|+|+.+......   ..+...+..   .....|+++|+||+||..
T Consensus        66 ~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          66 DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             HHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             hhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            345688999999999987542211   122233322   123468889999999975

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.94  E-value=0.00053  Score=61.13  Aligned_cols=94  Identities=16%  Similarity=0.104  Sum_probs=49.0

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCC-------CcchHHHHHHHhhcCCCcEEEEEeccCCCChh----hHHHH
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQG-------TRCHHLERHLKEHCKHKHMILLLNKCDLVPAW----ATKGW  264 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~-------s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~----~~~~w  264 (355)
                      +|| ..+...+...+.-+|.+|+||||.+...       ....+....+.. ..-+++|+++||+|+++..    ...+.
T Consensus       110 PGH-~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~i~~iiv~iNKmD~~~~~~~e~~~~ei  187 (245)
T d1r5ba3         110 PGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGINHLVVVINKMDEPSVQWSEERYKEC  187 (245)
T ss_dssp             CC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCSSEEEEEECTTSTTCSSCHHHHHHH
T ss_pred             ccc-ccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cCCCeEEEEEEcCCCCccchhHHHHHHH
Confidence            455 4466667778899999999999987421       111122222222 1234588999999997421    12223


Q ss_pred             HHHHh----hhC------CceEEEeeecCCCChHHHH
Q 018454          265 LRVLS----KEY------PSLAFHASINKSFGKGSLL  291 (355)
Q Consensus       265 ~~~l~----~~~------p~~~f~vSa~~~~Gi~~Ll  291 (355)
                      ++.+.    ...      .+.++++||.+|.|+.+++
T Consensus       188 ~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         188 VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             HHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            33332    211      1346788999999986654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.87  E-value=0.0015  Score=59.40  Aligned_cols=51  Identities=18%  Similarity=0.151  Sum_probs=41.6

Q ss_pred             HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      .++...+.-+|.+|+||||.+.....-..+.++...  .+.|.|+++||+|..
T Consensus        86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~--~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKT  136 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHT--TTCCEEEEEECTTST
T ss_pred             HHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHH--cCCCEEEEEeccccc
Confidence            345667888999999999999887766666666665  689999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.0025  Score=56.42  Aligned_cols=92  Identities=12%  Similarity=-0.020  Sum_probs=52.6

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCC-----CcchHHHHHHHhhcCCC-cEEEEEeccCCCChh--hHHHH---
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQG-----TRCHHLERHLKEHCKHK-HMILLLNKCDLVPAW--ATKGW---  264 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~-----s~~~~l~~~L~~~~~~k-~vILVlNK~DLvp~~--~~~~w---  264 (355)
                      ||| ..+...+...+..+|.+|+||||.+...     -.....+.+......+. ++|+++||+|++...  .....   
T Consensus        92 PGH-~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~~~~~~~e  170 (239)
T d1f60a3          92 PGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKE  170 (239)
T ss_dssp             CCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHH
T ss_pred             CCc-HHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHH
Confidence            455 3466677788999999999999976311     11111222211111344 578899999998632  22222   


Q ss_pred             -HHHHhhhC----CceEEEeeecCCCChH
Q 018454          265 -LRVLSKEY----PSLAFHASINKSFGKG  288 (355)
Q Consensus       265 -~~~l~~~~----p~~~f~vSa~~~~Gi~  288 (355)
                       ...+....    ....+.+|+.++.|+-
T Consensus       171 l~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         171 TSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             HHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             HHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence             22222221    1334678999988864

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.47  E-value=0.0028  Score=55.11  Aligned_cols=91  Identities=12%  Similarity=0.106  Sum_probs=52.2

Q ss_pred             cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCC-----cchHHHHHHH-hhcCCCcEEEEEeccCCCChh-hH---H---
Q 018454          196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGT-----RCHHLERHLK-EHCKHKHMILLLNKCDLVPAW-AT---K---  262 (355)
Q Consensus       196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s-----~~~~l~~~L~-~~~~~k~vILVlNK~DLvp~~-~~---~---  262 (355)
                      +|| ..+..++...+.-+|.+|+||||.+....     ...-.+.+.. ......++|+++||+|++... ..   +   
T Consensus        89 PGH-~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~~~~v~  167 (224)
T d1jnya3          89 PGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIV  167 (224)
T ss_dssp             SSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHH
T ss_pred             CCc-HHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHHHHHHHH
Confidence            565 45677778889999999999999875211     1111111111 112345789999999998522 11   1   


Q ss_pred             -HHHHHHhhh-C---CceEEEeeecCCCCh
Q 018454          263 -GWLRVLSKE-Y---PSLAFHASINKSFGK  287 (355)
Q Consensus       263 -~w~~~l~~~-~---p~~~f~vSa~~~~Gi  287 (355)
                       .....+... +   ...++.+|+..|.|+
T Consensus       168 ~~i~~~~~~~~~~~~~i~~IPISA~~G~NV  197 (224)
T d1jnya3         168 DQVSKFMRSYGFNTNKVRFVPVVAPSGDNI  197 (224)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEECBTTTTBTT
T ss_pred             HHHHhHHHhcCCCcccCeEEEEEccCCCCc
Confidence             111111111 1   233567898888876

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.22  E-value=0.0011  Score=55.61  Aligned_cols=120  Identities=12%  Similarity=0.152  Sum_probs=68.2

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeee
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASI  281 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa  281 (355)
                      ....+...+...+..+.|+|+..+.......+.+++..  .+.+++++.++++-  ....+.-........+.   ..++
T Consensus        73 ~~~~~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~  145 (213)
T d1bifa1          73 ALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ--NGYKTFFVESICVD--PEVIAANIVQVKLGSPD---YVNR  145 (213)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH--HTCEEEEEEECCCC--HHHHHHHHHHHTTTSTT---TTTS
T ss_pred             HHHHHHHHHHhcCCCEEEeecCCccHHHHHHHHHHHHh--cCCeEEEEEeeccH--HHHHHHhHHHHhcCCCc---cccc
Confidence            33444555556666667899987765544555555544  46788888888862  22221111111111111   1233


Q ss_pred             cCCCChHHHHHHHHHHHhhh---ccccceEEEEeecCCCChhHHHHHhhc
Q 018454          282 NKSFGKGSLLSVLRQFARLK---SDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       282 ~~~~Gi~~Ll~~L~q~~~~~---~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ....+.+.+.+.+..+.+..   .+.....+.+||.+|+|||+++|.+.+
T Consensus       146 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~I~~~n~g~~~lvn~i~g  195 (213)
T d1bifa1         146 DSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMDVGQSYVVNRVAD  195 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCCCTTTTTTSCEEEEETTTTEEEEECCCS
T ss_pred             chHHHHHHHHHhhhhccccccccCccccCCcCeEecCCCCceeeeccccc
Confidence            44455666777666555421   111223345899999999999998876

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0045  Score=57.34  Aligned_cols=87  Identities=14%  Similarity=0.098  Sum_probs=52.4

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh----------hCCceEE
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK----------EYPSLAF  277 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----------~~p~~~f  277 (355)
                      .+...+|.+++|++....  ..-+.+...+.+    ..=++|+||+|+........-...+..          ..+..++
T Consensus       163 ~i~~~aD~~l~v~~P~~G--d~iq~~k~gi~e----~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~  236 (327)
T d2p67a1         163 EVARMVDCFISLQIAGGG--DDLQGIKKGLME----VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL  236 (327)
T ss_dssp             HHHTTCSEEEEEECC--------CCCCHHHHH----HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred             hhhhccceEEEEecCCCc--hhhhhhchhhhc----cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeE
Confidence            367889999999864211  111112222222    234899999998765433222222211          1224578


Q ss_pred             EeeecCCCChHHHHHHHHHHHhh
Q 018454          278 HASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      .+||.+|.|+++|.+.|.++...
T Consensus       237 ~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         237 TCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             ECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999877653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.13  E-value=0.0023  Score=59.19  Aligned_cols=25  Identities=48%  Similarity=0.791  Sum_probs=22.8

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+...||+.|.|||||||||++|..
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHH
Confidence            4678899999999999999999985

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.01  Score=56.17  Aligned_cols=88  Identities=10%  Similarity=0.049  Sum_probs=57.4

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh-------------hHHHH----HHHHhhh
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW-------------ATKGW----LRVLSKE  271 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~-------------~~~~w----~~~l~~~  271 (355)
                      .+..+|++|+|.|.+  ....+..+.+.+.+  .++|+++|+||+|.....             .....    ...+...
T Consensus       132 ~~~~~d~~l~~~~~~--~~~~d~~l~~~l~~--~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         132 KFYEYDFFIIISATR--FKKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             TGGGCSEEEEEESSC--CCHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhcceEEEEecCCC--CCHHHHHHHHHHHH--cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            467899999998865  34455666677765  589999999999964211             11112    2223322


Q ss_pred             C--CceEEEeeecC--CCChHHHHHHHHHHHhh
Q 018454          272 Y--PSLAFHASINK--SFGKGSLLSVLRQFARL  300 (355)
Q Consensus       272 ~--p~~~f~vSa~~--~~Gi~~Ll~~L~q~~~~  300 (355)
                      .  ...+|.+|...  .+|+..|.+.|.+.++.
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            2  13467777643  46899999998887754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.66  E-value=0.0073  Score=49.50  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=22.9

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhc
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ...++-||+.|.+|+|||||.+.|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34678899999999999999999975

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.0022  Score=59.86  Aligned_cols=54  Identities=15%  Similarity=0.190  Sum_probs=43.6

Q ss_pred             HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454          201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV  256 (355)
Q Consensus       201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv  256 (355)
                      .+..++...+.-+|.+|+||||.+........+.+....  .+.|+|+|+||+|..
T Consensus       108 dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~--~~~p~i~viNKiDr~  161 (341)
T d1n0ua2         108 DFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA  161 (341)
T ss_dssp             SSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred             HHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH--cCCCeEEEEECcccc
Confidence            355667778889999999999999887766666666554  589999999999953

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.017  Score=48.03  Aligned_cols=57  Identities=12%  Similarity=0.070  Sum_probs=37.2

Q ss_pred             HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHH-------Hh-hcCCCcEEEEEeccCCCChh
Q 018454          202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHL-------KE-HCKHKHMILLLNKCDLVPAW  259 (355)
Q Consensus       202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L-------~~-~~~~k~vILVlNK~DLvp~~  259 (355)
                      ........+..+|.+++++|+.+...... .+..++       .. ...+.|+++|+||+|+....
T Consensus        63 ~~~~~~~~~~~~~~~i~~vd~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          63 LSDYLKTRAKFVKGLIFMVDSTVDPKKLT-TTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             HHHHHHHHGGGEEEEEEEEETTSCTTCCH-HHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             HHHHHHHHhhhccccceEEEEecccccHH-HHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            33455566788899999999886554432 222221       11 23578999999999997643

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.015  Score=48.01  Aligned_cols=91  Identities=13%  Similarity=0.185  Sum_probs=55.0

Q ss_pred             HhhhcCCCEEEEEecCCCCCCCcc-----hH-------HHHHHHh-hcCCCcEEEEEeccCCCChh--------------
Q 018454          207 YKVIDSSDVVVQVLDARDPQGTRC-----HH-------LERHLKE-HCKHKHMILLLNKCDLVPAW--------------  259 (355)
Q Consensus       207 ~kvi~~sDvVL~VvDardp~~s~~-----~~-------l~~~L~~-~~~~k~vILVlNK~DLvp~~--------------  259 (355)
                      ......++.+++|+|..+......     ..       +...+.. ...+.|++||+||+||.+..              
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~  141 (200)
T d1zcba2          62 FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFE  141 (200)
T ss_dssp             TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCC
T ss_pred             cccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCcccc
Confidence            346688899999999987653211     11       1112221 23578999999999985321              


Q ss_pred             --------hHHHHHHHHhhh------CCceEEEeeecCCCChHHHHHHHHHH
Q 018454          260 --------ATKGWLRVLSKE------YPSLAFHASINKSFGKGSLLSVLRQF  297 (355)
Q Consensus       260 --------~~~~w~~~l~~~------~p~~~f~vSa~~~~Gi~~Ll~~L~q~  297 (355)
                              ..+.....+...      .+...+..||+++.+++.+++.+.+.
T Consensus       142 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~  193 (200)
T d1zcba2         142 GDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT  193 (200)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHH
Confidence                    011112222221      13445567999999999999887654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.04  E-value=0.0048  Score=48.90  Aligned_cols=20  Identities=25%  Similarity=0.388  Sum_probs=18.2

Q ss_pred             EEEeecCCCChhHHHHHhhc
Q 018454          309 VGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      |.++|.||+|||||.+.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999865

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.91  E-value=0.023  Score=52.27  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=51.5

Q ss_pred             hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH-----HHHHHHHhhh------CCceEE
Q 018454          209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT-----KGWLRVLSKE------YPSLAF  277 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-----~~w~~~l~~~------~p~~~f  277 (355)
                      +..-+|..|+|+.......  .+.+-.-+.    ...=|+|+||+|+.+....     ..+...+...      .+..++
T Consensus       161 ~~~~~D~~v~v~~p~~GD~--iQ~~k~gil----E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~  234 (323)
T d2qm8a1         161 VADLTDFFLVLMLPGAGDE--LQGIKKGIF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVV  234 (323)
T ss_dssp             HHTTSSEEEEEECSCC--------CCTTHH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEE
T ss_pred             hhcccceEEEEeeccchhh--hhhhhhhHh----hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceE
Confidence            4566899999997543221  111100011    1234999999998764332     2233333211      224578


Q ss_pred             EeeecCCCChHHHHHHHHHHHhh
Q 018454          278 HASINKSFGKGSLLSVLRQFARL  300 (355)
Q Consensus       278 ~vSa~~~~Gi~~Ll~~L~q~~~~  300 (355)
                      .+|+.++.|+++|.+.|.++...
T Consensus       235 ~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         235 TISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999877653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.61  E-value=0.01  Score=48.82  Aligned_cols=90  Identities=9%  Similarity=0.078  Sum_probs=55.8

Q ss_pred             hhcCCCEEEEEecCCCCCCCc------------chHHHHHHHh-hcCCCcEEEEEeccCCCChhhH--------------
Q 018454          209 VIDSSDVVVQVLDARDPQGTR------------CHHLERHLKE-HCKHKHMILLLNKCDLVPAWAT--------------  261 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~s~------------~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~--------------  261 (355)
                      ....++.+++|+|+.++....            ...+...+.. ...+.|+++|+||+|+......              
T Consensus        65 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~  144 (200)
T d2bcjq2          65 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGP  144 (200)
T ss_dssp             GCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSC
T ss_pred             cccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCC
Confidence            568889999999998754211            1123333332 2467899999999998532110              


Q ss_pred             --------HHHHHHHhhh-----CCceEEEeeecCCCChHHHHHHHHHHH
Q 018454          262 --------KGWLRVLSKE-----YPSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       262 --------~~w~~~l~~~-----~p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                              ......+...     .....+.+||+++.|+.++++.|.+..
T Consensus       145 ~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I  194 (200)
T d2bcjq2         145 QRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  194 (200)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence                    1111122221     123356789999999999999887654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.44  E-value=0.016  Score=47.25  Aligned_cols=91  Identities=9%  Similarity=0.061  Sum_probs=54.7

Q ss_pred             hhhcCCCEEEEEecCCCCCCCcc---------h---HHHHHHHh-hcCCCcEEEEEeccCCCChhh--------------
Q 018454          208 KVIDSSDVVVQVLDARDPQGTRC---------H---HLERHLKE-HCKHKHMILLLNKCDLVPAWA--------------  260 (355)
Q Consensus       208 kvi~~sDvVL~VvDardp~~s~~---------~---~l~~~L~~-~~~~k~vILVlNK~DLvp~~~--------------  260 (355)
                      .....++.+++|+|..+......         .   .+...+.. ...+.|+++|+||+|+.....              
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~  140 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG  140 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCS
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcC
Confidence            36788999999999876543211         1   11222221 235689999999999742210              


Q ss_pred             ---HHHHHH----HHhhh------CCceEEEeeecCCCChHHHHHHHHHHH
Q 018454          261 ---TKGWLR----VLSKE------YPSLAFHASINKSFGKGSLLSVLRQFA  298 (355)
Q Consensus       261 ---~~~w~~----~l~~~------~p~~~f~vSa~~~~Gi~~Ll~~L~q~~  298 (355)
                         ......    .+...      .+...+.+||+++.|++++++.+.+..
T Consensus       141 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i  191 (195)
T d1svsa1         141 SNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  191 (195)
T ss_dssp             CSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence               111111    12111      123455689999999999999887653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.14  E-value=0.015  Score=51.40  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=23.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ++-.+++||.+|+|||||++.|.+-..
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            455789999999999999999998543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.0068  Score=49.79  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             cceEEEEeecCCCChhHHHHHhhc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ++..|.|+|.||+||||+-+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567889999999999999999965

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.01  E-value=0.011  Score=52.30  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=23.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ++-.|++||.+|+|||||++.|.+--.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            455789999999999999999998543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.91  E-value=0.054  Score=48.01  Aligned_cols=59  Identities=14%  Similarity=0.053  Sum_probs=38.8

Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW  343 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~  343 (355)
                      +|.+.-++.|.+.+....+.....|+++|.+|+|||||...+...........+..-.|
T Consensus        23 ~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~W   81 (277)
T d2a5yb3          23 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVW   81 (277)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEE
T ss_pred             eCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEE
Confidence            46665565555555444445566789999999999999999876554444444443344

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.027  Score=50.50  Aligned_cols=42  Identities=21%  Similarity=0.246  Sum_probs=30.0

Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .|.++-++.|.+.+.   .+..-++.+||-||||||+|+..|...
T Consensus        21 igRd~Ei~~l~~iL~---r~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          21 IGREKELERAIQVLC---RRRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CSCHHHHHHHHHHHT---SSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHh---cCccCCcEEECCCCCcHHHHHHHHHHH
Confidence            366655555555542   233457889999999999999998764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.64  E-value=0.017  Score=49.59  Aligned_cols=45  Identities=18%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             ChHHHHHHHHHHHhhhc--cccceEEEEeecCCCChhHHHHHhhccC
Q 018454          286 GKGSLLSVLRQFARLKS--DKQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~--~~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      |-+++.+.|+.+.....  ....-.+.|.|.||+||||++++|.+.-
T Consensus        13 Gq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          13 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             SCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            55666666665554322  1223467899999999999999998643

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.60  E-value=0.015  Score=51.65  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=22.4

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.+++||.+|+|||||++.|.+-.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            34568999999999999999998854

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.035  Score=49.81  Aligned_cols=41  Identities=29%  Similarity=0.473  Sum_probs=29.1

Q ss_pred             eEEEEeecCCCChhHHHHHhhccC-ccccCCC--CCee-EEEEEE
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKN-VILFFPA--SVVW-YWFYCQ  347 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~i--PGtT-~~~y~~  347 (355)
                      .-|+++|...+|||+|+|.|.+.. ...+++.  |.|. .|.+..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~   77 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCV   77 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEe
Confidence            467899999999999999999754 3344432  3333 777654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.017  Score=51.25  Aligned_cols=27  Identities=26%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ++-.+++||.+|+|||||++.|.+--.
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            445679999999999999999998543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.32  E-value=0.044  Score=46.63  Aligned_cols=41  Identities=20%  Similarity=0.275  Sum_probs=28.3

Q ss_pred             hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ++.|.++|...... ....+-.+.|.|.||+|||+++++|..
T Consensus        25 i~~l~~~l~~~l~~-~~~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          25 LQQLDILLGNWLRN-PGHHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             HHHHHHHHHHHHHS-TTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCCCCceEEECCCCCCHHHHHHHHHH
Confidence            34555555544322 123445789999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.94  E-value=0.036  Score=47.46  Aligned_cols=21  Identities=19%  Similarity=0.385  Sum_probs=18.1

Q ss_pred             EEEeecCCCChhHHHHHhhcc
Q 018454          309 VGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       309 V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ++|+|.||+|||++++++...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            456799999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.86  E-value=0.02  Score=48.95  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=21.3

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|..|+|||||++.|.+--
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3456899999999999999998743

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.85  E-value=0.024  Score=51.13  Aligned_cols=26  Identities=15%  Similarity=0.229  Sum_probs=22.3

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.|++||.+|+|||||++.|.+.-
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            34567999999999999999999854

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.75  E-value=0.019  Score=51.12  Aligned_cols=27  Identities=33%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccCc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKNV  331 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~  331 (355)
                      ++-.|++||.+|+|||||++.|.+-..
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            445689999999999999999988543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=92.68  E-value=0.03  Score=47.92  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=22.4

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhc
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .++..|+|.|.||+|||||-+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5678899999999999999999864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.68  E-value=0.031  Score=46.16  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=21.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+.-|.++|.||+||||+...|...
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4556789999999999999998754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.03  Score=49.14  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.++++|.+|+|||||+|.|.+-
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            445799999999999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.30  E-value=0.031  Score=49.05  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.++++|.+|+|||||++.|.+-.
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCCC
Confidence            34467999999999999999998753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.28  E-value=0.063  Score=48.96  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          290 LLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       290 Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      +.....+++.....+.+.-||+.|.++|||||+-+.|..
T Consensus        64 ~~~~~~~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          64 RQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             HHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            334445555444557789999999999999999888764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.21  E-value=0.027  Score=49.63  Aligned_cols=25  Identities=16%  Similarity=0.296  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +--++++|..|+|||||+|.|.+-.
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4456999999999999999999853

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.19  E-value=0.065  Score=49.02  Aligned_cols=37  Identities=19%  Similarity=0.216  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+++..+|.....     .+..|.++|-+|+||||++|+|+.
T Consensus       152 ~~~~~~~l~~~v~-----~~~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         152 KEQAISAIKDGIA-----IGKNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             HHHHHHHHHHHHH-----HTCCEEEEESTTSSHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHH-----hCCCEEEEeeccccchHHHHHHhh
Confidence            4556666666554     234578999999999999999997

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.14  E-value=0.028  Score=49.60  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCc
Confidence            4457999999999999999999854

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.04  E-value=0.07  Score=45.90  Aligned_cols=42  Identities=21%  Similarity=0.251  Sum_probs=32.5

Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ..+-.++..|+.++.  ...+.-.+.|+|.||+|||.+.++|++
T Consensus        34 i~~~~Fl~~l~~~l~--~~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          34 IEFITFLGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CCHHHHHHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHc--CCCCceEEEEECCCCccHHHHHHHHHH
Confidence            345567777777763  345567889999999999999999876

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=92.02  E-value=0.034  Score=48.85  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.+|++|..|+|||||+|.|.+--
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4456999999999999999999854

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.97  E-value=0.029  Score=49.71  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=22.0

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++--++++|..|+|||||+|.|.+-.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            34456999999999999999999853

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.95  E-value=0.079  Score=45.31  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             ccceEEEEeecCCCChhHHHHHhhccC
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ..+.-|.++|.||+|||||..+|.+.-
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            345568899999999999999997643

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.92  E-value=0.036  Score=48.87  Aligned_cols=24  Identities=13%  Similarity=0.223  Sum_probs=21.1

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.++++|.+|+|||||++.|.+-
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            445799999999999999999884

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=91.72  E-value=0.023  Score=49.91  Aligned_cols=25  Identities=12%  Similarity=0.139  Sum_probs=21.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +--++++|.+|+|||||++.|.+-.
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Confidence            4457999999999999999999854

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.034  Score=48.51  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      .+-.++++|..|+|||||+|.|.+-
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3456799999999999999999874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=91.57  E-value=0.039  Score=47.01  Aligned_cols=45  Identities=16%  Similarity=0.218  Sum_probs=30.4

Q ss_pred             ChHHHHHHHHHHHhhhc--cccceEEEEeecCCCChhHHHHHhhccC
Q 018454          286 GKGSLLSVLRQFARLKS--DKQAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~--~~~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      |-+.+++.|..+.....  ....-.+.|.|.||+||||+.+.|...-
T Consensus        13 Gqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          13 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhcc
Confidence            55566666665543221  1223357899999999999999998643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.47  E-value=0.075  Score=45.05  Aligned_cols=37  Identities=24%  Similarity=0.303  Sum_probs=27.8

Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      +|.++.++.|.+.       .+-.|.+.|.+|+|||||++.+..
T Consensus        15 ~GR~~el~~l~~~-------~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          15 FDREKEIEKLKGL-------RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CCCHHHHHHHHHT-------CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CChHHHHHHHHhc-------cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            4777777776543       123567899999999999998875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.40  E-value=0.1  Score=44.42  Aligned_cols=41  Identities=20%  Similarity=0.381  Sum_probs=29.1

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.++-++.|.+.+.   .+..-++.+||-||||||+++-.|...
T Consensus        26 gRd~Ei~~l~~iL~---r~~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          26 GRDEEIRRTIQVLQ---RRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCHHHHHHHHHHHT---SSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHh---ccCCCCeEEEecCCcccHHHHHHHHHH
Confidence            55555555544442   234457899999999999999988763

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=91.37  E-value=0.038  Score=48.75  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.6

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.++++|.+|+|||||++.|.+-.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            4457999999999999999998754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.89  E-value=0.052  Score=48.22  Aligned_cols=26  Identities=15%  Similarity=0.303  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .+-.++++|.+|+|||||++.|.+-.
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            34457999999999999999999854

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.78  E-value=0.097  Score=44.25  Aligned_cols=41  Identities=22%  Similarity=0.435  Sum_probs=30.1

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |-+.+++.|.+++...   ..-.+.|.|.||+||||++.+|.+.
T Consensus        28 g~~~~~~~l~~~i~~~---~~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          28 GQEHIVKRLKHYVKTG---SMPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             SCHHHHHHHHHHHHHT---CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4456777777776432   2234789999999999999998763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.39  E-value=0.053  Score=47.81  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=20.1

Q ss_pred             EEEEeecCCCChhHHHHHhhccC
Q 018454          308 SVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       308 ~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      .++++|.+|+|||||++.|.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35799999999999999998843

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=89.59  E-value=0.18  Score=43.95  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.4

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +..|.|.|.||+|||+|+++|.+.-
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHc
Confidence            4458999999999999999998643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.55  E-value=0.079  Score=46.36  Aligned_cols=26  Identities=23%  Similarity=0.425  Sum_probs=22.8

Q ss_pred             cccceEEEEeecCCCChhHHHHHhhc
Q 018454          303 DKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .+..+.|+++|..++|||||+.+|+.
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHH
Confidence            35678999999999999999999953

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.45  E-value=0.045  Score=48.34  Aligned_cols=26  Identities=15%  Similarity=0.367  Sum_probs=22.1

Q ss_pred             cceEEEEeecCCCChhHHHHHhhccC
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      ++-.++++|.+|+|||||++.|.+-.
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            34467999999999999999998854

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=89.34  E-value=0.14  Score=44.96  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.+.+.|.||+|||+++++|-..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            445789999999999999999863

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.21  E-value=0.22  Score=44.71  Aligned_cols=26  Identities=23%  Similarity=0.206  Sum_probs=21.8

Q ss_pred             ccccceEEEEeecCCCChhHHHHHhh
Q 018454          302 SDKQAISVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       302 ~~~~~i~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      ..+.++-|||-|.+|+|||||-..|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34568899999999999999887664

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.32  E-value=0.21  Score=43.51  Aligned_cols=25  Identities=16%  Similarity=0.337  Sum_probs=21.3

Q ss_pred             ceEEEEeecCCCChhHHHHHhhccC
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTKN  330 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~~  330 (355)
                      +-.|.+.|.||+|||++++++...-
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHh
Confidence            4457899999999999999998743

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=88.18  E-value=0.27  Score=42.70  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=29.6

Q ss_pred             ChHHHHHHHHHHHhh---hccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARL---KSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~---~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ++..+++.+..++..   ........|.|.|.||+|||++.++|-..
T Consensus        17 ~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          17 PVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhc
Confidence            345555555444332   22234567899999999999999999754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.00  E-value=0.2  Score=42.50  Aligned_cols=26  Identities=15%  Similarity=0.235  Sum_probs=21.7

Q ss_pred             eEEEEeecCCCChhHHHHHhhccCcc
Q 018454          307 ISVGFVGYPNVGKSSVINTLRTKNVI  332 (355)
Q Consensus       307 i~V~~vG~pNVGKSSLIN~Ll~~~~~  332 (355)
                      -.+.|.|.||+||||++.+|.+.-.+
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~~   78 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELGY   78 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            45789999999999999999875433

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.34  E-value=0.25  Score=41.36  Aligned_cols=41  Identities=27%  Similarity=0.475  Sum_probs=29.5

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |-+++++.|.++....   ..-.+.|.|.||+||||++..|.+.
T Consensus        18 g~~~~~~~L~~~i~~~---~~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          18 GQNEVITTVRKFVDEG---KLPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             SCHHHHHHHHHHHHTT---CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcC---CCCeEEEECCCCCChhHHHHHHHHH
Confidence            4456777777766422   1224789999999999999998764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.33  E-value=0.35  Score=42.74  Aligned_cols=43  Identities=16%  Similarity=0.236  Sum_probs=31.0

Q ss_pred             CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      .....+...|...+. +...++..+.++|.|+.|||+++++|..
T Consensus        84 ~~~~~f~~~l~~~L~-~~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_          84 YDPQYAASVFLGWAT-KKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCHHHHHHHHHHHHT-TCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHc-CCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            344455566665543 2334577889999999999999999875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=86.44  E-value=0.25  Score=46.19  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=28.0

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |.++-++.+.+.+.   .+..-++.+||-||||||+|+..|...
T Consensus        26 gr~~ei~~~~~~L~---r~~k~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          26 GRDEEIRRVIQILL---RRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             SCHHHHHHHHHHHH---CSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHh---cCCCCCCeEECCCCCCHHHHHHHHHHH
Confidence            66655555544432   133455689999999999999988753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.40  E-value=0.27  Score=41.23  Aligned_cols=40  Identities=23%  Similarity=0.386  Sum_probs=27.8

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      |-+++++.|.++....   ..-.+.|.|.||+||||+++.|..
T Consensus        19 g~~~~~~~L~~~~~~~---~~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          19 GNKETIDRLQQIAKDG---NMPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             SCTHHHHHHHHHHHSC---CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcC---CCCeEEEECCCCCCchhhHHHHHH
Confidence            3346667777666422   222468999999999999988764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.50  E-value=0.21  Score=41.88  Aligned_cols=38  Identities=26%  Similarity=0.368  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       289 ~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ++++.|++++..   ...-.+.|.|.||+||||++..|.+.
T Consensus        19 ~~~~~l~~~i~~---~~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          19 HAVTVLKKTLKS---ANLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             TTHHHHHHHTTC---TTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCeEEEECCCCCChHHHHHHHHHH
Confidence            344555555431   12223689999999999999998763

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.34  E-value=0.52  Score=41.18  Aligned_cols=57  Identities=14%  Similarity=0.228  Sum_probs=36.1

Q ss_pred             HHHHHHHhhhcCCC-EEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChh
Q 018454          201 RIWGELYKVIDSSD-VVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAW  259 (355)
Q Consensus       201 ri~~el~kvi~~sD-vVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~  259 (355)
                      .+...+..++...+ ++++|.++..+..... ..+.+.+..  ...++++|+||+|+++..
T Consensus       150 ~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~--~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECGGGSCTT
T ss_pred             HHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCc--CCCceeeEEeccccccch
Confidence            34455666776676 6677777765554322 233333332  346899999999998764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.19  E-value=0.24  Score=41.84  Aligned_cols=42  Identities=14%  Similarity=0.133  Sum_probs=28.9

Q ss_pred             ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      |-+++.+.|.++.....  ..-.+.|.|.||+||||++.+|...
T Consensus        15 g~~~~~~~L~~~~~~~~--~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          15 HNEELTNFLKSLSDQPR--DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             SCHHHHHHHHTTTTCTT--CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CcHHHHHHHHHHHHcCC--CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            44566777766553221  1224689999999999999988753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=84.27  E-value=0.075  Score=42.42  Aligned_cols=18  Identities=22%  Similarity=0.342  Sum_probs=16.4

Q ss_pred             EEeecCCCChhHHHHHhh
Q 018454          310 GFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       310 ~~vG~pNVGKSSLIN~Ll  327 (355)
                      .|+|..|+|||||+.+|.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            488999999999999985

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.04  E-value=0.25  Score=45.35  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=21.1

Q ss_pred             cce-EEEEeecCCCChhHHHHHhhc
Q 018454          305 QAI-SVGFVGYPNVGKSSVINTLRT  328 (355)
Q Consensus       305 ~~i-~V~~vG~pNVGKSSLIN~Ll~  328 (355)
                      ..| .|+++|..+.|||||+.+|+.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHH
Confidence            346 599999999999999999984

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.81  E-value=0.16  Score=44.72  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.0

Q ss_pred             ceEEEEeecCCCChhHHHHHhhcc
Q 018454          306 AISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +-.|.+.|.||+|||+|+++|.+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            446889999999999999999764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=82.43  E-value=0.65  Score=42.67  Aligned_cols=25  Identities=20%  Similarity=0.147  Sum_probs=21.2

Q ss_pred             cceEEEEeecCCCChhHHHHHhhcc
Q 018454          305 QAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       305 ~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      +.-.+.|.|.||+|||++.++|.+.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHH
Confidence            4456789999999999999999763

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.09  E-value=0.33  Score=40.96  Aligned_cols=51  Identities=18%  Similarity=0.243  Sum_probs=32.4

Q ss_pred             hhcCCCEEEEEecCCCCCC--------Ccch----HHHHHHHh-hcCCCcEEEEEeccCCCChh
Q 018454          209 VIDSSDVVVQVLDARDPQG--------TRCH----HLERHLKE-HCKHKHMILLLNKCDLVPAW  259 (355)
Q Consensus       209 vi~~sDvVL~VvDardp~~--------s~~~----~l~~~L~~-~~~~k~vILVlNK~DLvp~~  259 (355)
                      ..+.++.+++|+|..+...        .+..    .+...+.. ...+.|++|++||+||....
T Consensus        67 ~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k  130 (221)
T d1azta2          67 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK  130 (221)
T ss_dssp             GCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHH
T ss_pred             hcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhh
Confidence            5678899999999875321        1111    12222222 23578999999999996543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.53  E-value=0.28  Score=42.77  Aligned_cols=21  Identities=29%  Similarity=0.623  Sum_probs=18.2

Q ss_pred             ceEEEEeecCCCChhHHHHHhh
Q 018454          306 AISVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       306 ~i~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      +++ .|||..|+||||+|.||.
T Consensus        25 ~ln-vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          25 RVT-AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SEE-EEECCTTTCSTHHHHHHH
T ss_pred             CeE-EEECCCCCcHHHHHHHHH
Confidence            466 599999999999999883

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.46  E-value=1.4  Score=38.45  Aligned_cols=57  Identities=19%  Similarity=0.216  Sum_probs=36.2

Q ss_pred             HHHHHHHhhhcCCCE-EEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChh
Q 018454          201 RIWGELYKVIDSSDV-VVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAW  259 (355)
Q Consensus       201 ri~~el~kvi~~sDv-VL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~  259 (355)
                      .+..-+..++..++. |+.|+++..+..... ..+.+.+..  ...++++|+||+|+++..
T Consensus       156 ~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~--~~~r~i~Vitk~D~~~~~  214 (306)
T d1jwyb_         156 QIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLDLMDKG  214 (306)
T ss_dssp             HHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSS
T ss_pred             HHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc--CCCeEEEEEeccccccch
Confidence            345666678888885 566667765544332 233333322  346899999999998654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.22  E-value=0.92  Score=38.18  Aligned_cols=39  Identities=10%  Similarity=0.111  Sum_probs=25.8

Q ss_pred             HHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454          290 LLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK  329 (355)
Q Consensus       290 Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~  329 (355)
                      ....+.+++..... ..-.+++.|.||+|||.|++++-..
T Consensus        21 a~~~~~~~~~~~~~-~~n~l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          21 AYEVVKEALENLGS-LYNPIFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             HHHHHHHHHHTTTT-SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCC-CCCcEEEECCCCCcHHHHHHHHHHH
Confidence            44555555432221 1123789999999999999998753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=80.60  E-value=0.43  Score=40.76  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=16.1

Q ss_pred             ccceEEEEeecCCCChhHHHHHhh
Q 018454          304 KQAISVGFVGYPNVGKSSVINTLR  327 (355)
Q Consensus       304 ~~~i~V~~vG~pNVGKSSLIN~Ll  327 (355)
                      +.+.-|+|||.+||||+|.+=.|-
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456778999999999999986664

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.21  E-value=0.54  Score=39.96  Aligned_cols=57  Identities=16%  Similarity=0.089  Sum_probs=32.5

Q ss_pred             CCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCce
Q 018454          212 SSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL  275 (355)
Q Consensus       212 ~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~  275 (355)
                      ..|.+|.|||+........  +.+...|.     .-=++|+||+|+++..  +...+.++...|..
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~-----~AD~ivlNK~Dl~~~~--~~~~~~l~~lNP~a  179 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVG-----YADRILLTKTDVAGEA--EKLHERLARINARA  179 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHH-----TCSEEEEECTTTCSCT--HHHHHHHHHHCSSS
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHH-----hCCcccccccccccHH--HHHHHHHHHHhCCC
Confidence            4588999999976432111  11222232     1237999999998743  33444455556643