Citrus Sinensis ID: 018455

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSLL
Secondary Structure (PSIPRED)
ccEEccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHccccHHHHHHHccccccHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHcHHHHHHHHHcccEEEccccEEEEEEccccEEEEEEEccEEEEEEcEEEEcccHHHHHHHHcccccccHHHHHHHHcccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEHccccHHccHHHHHHHHHcccHHHHccccccHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHcccEEEEcccEEEEEEcccccEEEEEEEccEEEEEEEEEEEcccHHHHHHcccHHHHccHHHHHHHccccEEEEEEEEEEccEEEccccccEEEcccccccHHHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccHHHHccccccc
Coil and Loop (DISEMBL)
mqgfwypfrNIFSLVDelgikpftgwmksaqyseeglevefpifqdlnqlptplgtlfytqfsrlplvdrltslplMAAVIDFDNTDVAWRKYDSITARELFKQFgcserlyrnvigplvqvglfapaeqCSAAATLGILYFIILAHQKnfdlvwcrgtlrekifepwmdsmrtrgcefldgrrvtdfiydeerccisdvvcgketysAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFdkkvtvpnvsnacsgfgdslaWTFFDLNKiydehkddsaTVIQADFyhanelmplkddQVVAKAVSYLSKCIKDFSTATVMDhkirrfpkslthffpgsll
Flexible Loop (DISEMBL)
MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREkifepwmdsmrtrgcefldgRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRrfpkslthffpgsll
Low Complexity Region (SEG)
MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSLL
Disordered region (IsUnstruct)
**GFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF*****
Disordered Region (DISOPRED)
MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSLL
Disordered Region (DISEMBL)
MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSLL
Disordered Region (DISPRO)
MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
Q31N27	481	Probable zeta-carotene de	yes	no	0.704	0.519	0.242	1e-07
Q07356	566	15-cis-phytoene desaturas	yes	no	0.957	0.600	0.201	7e-07
P80093	582	15-cis-phytoene desaturas	N/A	no	0.963	0.587	0.189	3e-06
Q0DUI8	578	Phytoene dehydrogenase, c	no	no	0.960	0.589	0.201	5e-06
A2XDA1	578	Phytoene dehydrogenase, c	N/A	no	0.960	0.589	0.201	5e-06
P49086	571	Phytoene dehydrogenase, c	N/A	no	0.957	0.595	0.203	9e-06
P28553	570	Phytoene dehydrogenase, c	yes	no	0.946	0.589	0.193	2e-05
P26294	474	15-cis-phytoene desaturas	no	no	0.715	0.535	0.197	3e-05
P28554	583	Phytoene dehydrogenase, c	N/A	no	0.963	0.586	0.187	3e-05
Q40406	570	Phytoene dehydrogenase, c	N/A	no	0.952	0.592	0.197	4e-05

>sp|Q31N27|ZDS_SYNE7 Probable zeta-carotene desaturase OS=Synechococcus elongatus (strain PCC 7942) GN=zds PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 112/272 (41%), Gaps = 22/272 (8%)

Query: 4   FWYPFRNIFSLVDELGIKPFTGWMKSAQ---YSEEGLEV-----EFPIFQDLNQLPTPLG 55
           F++ + N+F+L+ ++G   F   +  A    +  +G EV      FPI    N L     
Sbjct: 57  FFFNYANLFALMRKVG--AFENLLPKAHTHTFINKGGEVGELDFRFPIGAPFNGLKAFFT 114

Query: 56  TLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNV 115
           T   T   +L     L + PL+  ++D++      R  D I+  + F+  G SE   + +
Sbjct: 115 TSQLTWLDKLQNALALGTSPLVRGILDYEGAMKIIRALDRISFADWFRSHGGSEGSLKRM 174

Query: 116 IGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTR 175
             P+     F   E  SA   L + + +  A  +   L    G+  E + +P +D ++ R
Sbjct: 175 WNPIAYALGFIDTENISARCMLTV-FQMFAAKTEASKLNLLAGSPAEYLHKPILDYIQAR 233

Query: 176 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAV--------VLAVGISTLQELIKN 227
           G      RRV +  Y E       VV G +     AV        + A  +  +Q L+  
Sbjct: 234 GATLHLRRRVREIEYTETNG--QTVVTGLQIADGDAVERVEADVYLAACDVPGIQRLLPE 291

Query: 228 SILCNREEFLKVLNLASIDVVSVKLWFDKKVT 259
           +      EF  +  L ++ V +V+L FD  VT
Sbjct: 292 A-WRKWSEFDNIYKLDAVPVATVQLRFDGWVT 322

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
Synechococcus elongatus (strain PCC 7942) (taxid: 1140)
EC: 1EC: .EC: 3EC: .EC: 5EC: .EC: 6

>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=1 SV=1

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 72/358 (20%), Positives = 144/358 (40%), Gaps = 18/358 (5%)

Query: 4   FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLFYTQF 62
           F+  + N+ +L  ELGI     W + +  ++      EF  F   + LP PL  ++    
Sbjct: 149 FFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPDVLPAPLNGIWAILR 208

Query: 63  SRLPLVDRLTSLPLMAAVIDFDNTDVAWRKY----DSITARELFKQFGCSERLYRNVIGP 118
           +     + LT    +   I      V  + Y    D ++ +E  ++ G  ER+   V   
Sbjct: 209 NN----EMLTWPEKIKFAIGLLPAMVGGQAYVEAQDGLSVKEWMEKQGVPERVTDEVFIA 264

Query: 119 LVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCE 178
           + +   F   ++ S    L I     L  +    + +  G   E++  P +D +R+ G E
Sbjct: 265 MSKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPVVDHIRSLGGE 323

Query: 179 FLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLK 238
                R+     +++    S ++    T    A V A  +  L+ L+ +        F K
Sbjct: 324 VQLNSRIKKIELNDDGTVKSFLLTNGSTVEGDAYVFAAPVDILKLLLPDP-WKEIPYFKK 382

Query: 239 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQA 298
           +  L  + V++V +WFD+K+   N  +       +L   + D++    E+ D + ++++ 
Sbjct: 383 LDKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSNLLSVYADMSLTCKEYYDPNRSMLEL 440

Query: 299 DFYHANELMPLKDDQVVAKAVSYLSKCIK-----DFSTATVMDHKIRRFPKSLTHFFP 351
            F  A E +   D  ++   +  L K        D S A ++ + + + P+S+    P
Sbjct: 441 VFAPAEEWISRTDSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIP 498

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. The zeta-carotene produced has a central C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS, the next enzyme in the lycopene biosynthesis pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|P80093|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=1 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/358 (18%), Positives = 146/358 (40%), Gaps = 16/358 (4%)

Query: 4   FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLF--YT 60
           F+  + N+ +L  ELGI     W + +  ++      EF  F     LP PL  +     
Sbjct: 167 FFGAYPNMQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEALPAPLNGILAILK 226

Query: 61  QFSRLPLVDRLT-SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPL 119
               L   +++  ++ L+ A++   +   A    D I+ ++  ++ G  +R+   V   +
Sbjct: 227 NNEMLTWPEKVKFAIGLLPAMLGGQSYVEA---QDGISVKDWMRKQGVPDRVTDEVFIAM 283

Query: 120 VQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 179
            +   F   ++ S    L I     L  +    + +  G   E++  P ++ + ++G + 
Sbjct: 284 SKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQV 342

Query: 180 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 239
               R+     +E+      ++    T    A V A  +   + L+          F K+
Sbjct: 343 RLNSRIKKIELNEDGSVKCFILNDGSTIEGDAFVFATPVDIFKLLLPED-WKEIPYFQKL 401

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
             L  + V++V +WFD+K+   N S+        L   + D++    E+ D + ++++  
Sbjct: 402 EKLVGVPVINVHIWFDRKLK--NTSDNLLFSRSPLLSVYADMSVTCKEYYDPNKSMLELV 459

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCI-----KDFSTATVMDHKIRRFPKSLTHFFPG 352
           F  A E +   D +++   +  L+K        D S A ++ + + + P+S+    PG
Sbjct: 460 FAPAEEWVSRSDSEIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPG 517

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. The favored substrate is 15-cis-phytoene. The zeta-carotene produced has a central C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS, the next enzyme in the lycopene biosynthesis pathway.

Capsicum annuum (taxid: 4072)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 72/357 (20%), Positives = 141/357 (39%), Gaps = 16/357 (4%)

Query: 4   FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLF--YT 60
           F+  + NI +L  ELGI     W + +  ++      EF  F     LP PL  ++    
Sbjct: 161 FFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILR 220

Query: 61  QFSRLPLVDRLT-SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPL 119
               L   +++  +L L+ A++            D  T  E  K+ G  +R+   V   +
Sbjct: 221 NNEMLTWPEKVKFALGLLPAMV---GGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVFIAM 277

Query: 120 VQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 179
            +   F   ++ S    L I     L  +    + +  G   E++  P +D +R+ G E 
Sbjct: 278 SKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEV 336

Query: 180 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 239
               R+     + +       +      +  A V A  +  L+ L+          F K+
Sbjct: 337 RLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLLVPQE-WKEISYFKKL 395

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
             L  + V++V +WFD+K+   N  +       SL   + D++    E+ D + ++++  
Sbjct: 396 EKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELV 453

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCI-----KDFSTATVMDHKIRRFPKSLTHFFP 351
           F  A E +   D +++   +  L+K        D S A ++ + + + P+S+    P
Sbjct: 454 FAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIP 510

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 72/357 (20%), Positives = 141/357 (39%), Gaps = 16/357 (4%)

Query: 4   FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLF--YT 60
           F+  + NI +L  ELGI     W + +  ++      EF  F     LP PL  ++    
Sbjct: 161 FFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILR 220

Query: 61  QFSRLPLVDRLT-SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPL 119
               L   +++  +L L+ A++            D  T  E  K+ G  +R+   V   +
Sbjct: 221 NNEMLTWPEKVKFALGLLPAMV---GGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVFIAM 277

Query: 120 VQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 179
            +   F   ++ S    L I     L  +    + +  G   E++  P +D +R+ G E 
Sbjct: 278 SKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEV 336

Query: 180 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 239
               R+     + +       +      +  A V A  +  L+ L+          F K+
Sbjct: 337 RLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLLVPQE-WKEISYFKKL 395

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
             L  + V++V +WFD+K+   N  +       SL   + D++    E+ D + ++++  
Sbjct: 396 EKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELV 453

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCI-----KDFSTATVMDHKIRRFPKSLTHFFP 351
           F  A E +   D +++   +  L+K        D S A ++ + + + P+S+    P
Sbjct: 454 FAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIP 510

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P49086|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 141/358 (39%), Gaps = 18/358 (5%)

Query: 4   FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLFYTQF 62
           F+  + NI +L  EL I+    W + +  ++      EF  F     LP P+  ++    
Sbjct: 153 FFGAYPNIQNLFGELRIEDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPINGIWAI-- 210

Query: 63  SRLPLVDRLTSLPLMAAVIDFDNTDVAWRKY----DSITARELFKQFGCSERLYRNVIGP 118
             L   + LT    +   I      V  + Y    D +T  E  K+ G  +R+   V   
Sbjct: 211 --LRNNEMLTWPEKVKFAIGLLPAMVGGQPYVEAQDGLTVSEWMKKQGVPDRVNDEVFIA 268

Query: 119 LVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCE 178
           + +   F   ++ S    L I     L  +    + +  G   E++  P +D +R+RG E
Sbjct: 269 MSKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIRSRGGE 327

Query: 179 FLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLK 238
                R+     + +       +      +  A V A  +   + L+          F K
Sbjct: 328 VRLNSRIKKIELNPDGTVKHFALSDGTQITGDAYVCATPVDIFKLLVPQE-WSEITYFKK 386

Query: 239 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQA 298
           +  L  + V++V +WFD+K+   N  +       SL   + D++    E+ D + ++++ 
Sbjct: 387 LEKLVGVPVINVHIWFDRKLN--NTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLEL 444

Query: 299 DFYHANELMPLKDDQVVAKAVSYLSKCIK-----DFSTATVMDHKIRRFPKSLTHFFP 351
            F  A+E +   D +++   +  L+K        D S A ++ + I + P+S+    P
Sbjct: 445 VFAPADEWIGRSDTEIIDATMEELAKLFPDEIAADQSKAKILKYHIVKTPRSVYKTVP 502

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/356 (19%), Positives = 145/356 (40%), Gaps = 20/356 (5%)

Query: 6   YPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSR 64
           YP+  + +L  ELGI     W + +  ++      EF  F     LP+PL  ++    + 
Sbjct: 159 YPY--VQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPSPLNGIWAILRNN 216

Query: 65  LPLVDRLTSLPLMAAVIDFDNTDVAWRKY----DSITARELFKQFGCSERLYRNVIGPLV 120
               + LT    +   I      +  + Y    D ++ +E  K+ G  ER+   V   + 
Sbjct: 217 ----EMLTWPEKVKFAIGLLPAMLGGQPYVEAQDGLSVQEWMKKQGVPERVADEVFIAMS 272

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
           +   F   ++ S    L I     L  +    + +  G   E++  P +D +++ G E  
Sbjct: 273 KALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVDYIQSLGGEVH 331

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVL 240
              R+     +++    S ++   +     A V A  +  L+ L+ ++       F ++ 
Sbjct: 332 LNSRIQKIELNDDGTVKSFLLNNGKVMEGDAYVFATPVDILKLLLPDN-WKGIPYFQRLD 390

Query: 241 NLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADF 300
            L  + V++V +WFD+K+   N  +        L   + D++    E+   + ++++  F
Sbjct: 391 KLVGVPVINVHIWFDRKLK--NTYDHLLFSRSPLLSVYADMSVTCKEYYSPNQSMLELVF 448

Query: 301 YHANELMPLKDDQVVAKAVSYLSKCIK-----DFSTATVMDHKIRRFPKSLTHFFP 351
             A E +   DD ++   ++ L+K        D S A ++ + + + P+S+    P
Sbjct: 449 APAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVP 504

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P26294|PDS_SYNE7 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=1 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 122/268 (45%), Gaps = 14/268 (5%)

Query: 94  DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 153
           D  +  E  ++    ER+   V   + +   F   ++ SA   L  L    L  +K   +
Sbjct: 147 DQYSWTEWLRKQNIPERVNDEVFIAMAKALNFIDPDEISATVVLTALNRF-LQEKKGSMM 205

Query: 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYS 208
            +  G   E++ +P ++ ++ RG + L    + +F+ +++    +  + G     ++   
Sbjct: 206 AFLDGAPPERLCQPIVEHVQARGGDVLLNAPLKEFVLNDDSSVQAFRIAGIKGQEEQLIE 265

Query: 209 AGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACS 268
           A A V A+ +  L+ L+ ++       F ++  L  + V+++ LWFD+K+T  ++ +   
Sbjct: 266 ADAYVSALPVDPLKLLLPDAWKA-MPYFQQLDGLQGVPVINIHLWFDRKLT--DIDHLLF 322

Query: 269 GFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI-K 327
                L+  + D++    E++D   ++++  F  A + +   D+ ++A  ++ + K   +
Sbjct: 323 SRSPLLS-VYADMSNTCREYEDPDRSMLELVFAPAKDWIGRSDEDILAATMAEIEKLFPQ 381

Query: 328 DFS---TATVMDHKIRRFPKSLTHFFPG 352
            FS    A +  +KI + P S+    PG
Sbjct: 382 HFSGENPARLRKYKIVKTPLSVYKATPG 409

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. Also active with phytofluene and 1,2-epoxyphytoene as substrates.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|P28554|CRTI_SOLLC Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/358 (18%), Positives = 146/358 (40%), Gaps = 16/358 (4%)

Query: 4   FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLF--YT 60
           F+  + NI +L  ELGI     W + +  ++      EF  F     LP PL  +     
Sbjct: 168 FFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFSEALPAPLNGILAILK 227

Query: 61  QFSRLPLVDRLT-SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPL 119
               L   +++  ++ L+ A++   +   A    D I+ ++  ++ G  +R+   V   +
Sbjct: 228 NNEMLTWPEKVKFAIGLLPAMLGGQSYVEA---QDGISVKDWMRKQGVPDRVTDEVFIAM 284

Query: 120 VQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 179
            +   F   ++ S    L I     L  +    + +  G   E++  P ++ + ++G + 
Sbjct: 285 SKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQV 343

Query: 180 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 239
               R+     +E+    S ++         A V A  +   + L+          F K+
Sbjct: 344 RLNSRIKKIELNEDGSVKSFILSDGSAIEGDAFVFAAPVDIFKLLLPED-WKEIPYFQKL 402

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
             L  + V++V +WFD+K+   N  +       SL   + D++    E+ + + ++++  
Sbjct: 403 EKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSSLLSVYADMSVTCKEYYNPNQSMLELV 460

Query: 300 FYHANELMPLKDDQVVAKAVSYLS-----KCIKDFSTATVMDHKIRRFPKSLTHFFPG 352
           F  A E +   D +++   +  L+     +   D S A ++ + + + P+S+    PG
Sbjct: 461 FAPAEEWISRSDSEIIDATMKELATLFPDEISADQSKAKILKYHVVKTPRSVYKTVPG 518

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 71/360 (19%), Positives = 143/360 (39%), Gaps = 22/360 (6%)

Query: 4   FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLFYTQF 62
           F+  + N+ +L  ELGI     W + +  ++      EF  F     LP PL  ++    
Sbjct: 154 FFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILR 213

Query: 63  SRLPLVDRLTSLPLMAAVIDFDNTDVAWRKY----DSITARELFKQFGCSERLYRNVIGP 118
           +     + LT    +   I      V  + Y    D +T  E  ++ G  +R+   V   
Sbjct: 214 NN----EMLTWPEKVRFAIGLLPAMVGGQAYVEAQDGLTVTEWMRRQGVPDRVNDEVFIA 269

Query: 119 LVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCE 178
           + +   F   ++ S    L I     L  +    + +  G   E++  P +D +++ G  
Sbjct: 270 MSKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGR 328

Query: 179 FLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNRE--EF 236
                R+     + +      V+      +  A V+A  +  L+ L+       RE   F
Sbjct: 329 AQLNSRLQKIELNPDGTVKHFVLGNGNIITGDAYVVAAPVDILKLLLPQEW---REIPYF 385

Query: 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVI 296
            K+  L  + V++V +WFD+K+   N  +        L   + D++    E+ D + +++
Sbjct: 386 QKLDKLVGVPVINVHIWFDRKLK--NTYDHLLFTRSPLLSVYADMSVTCKEYYDPNRSML 443

Query: 297 QADFYHANELMPLKDDQVVAKAVSYLSKCIK-----DFSTATVMDHKIRRFPKSLTHFFP 351
           +  F  A E +   D +++ + +  L+K        D S A ++ + + + P+S+    P
Sbjct: 444 ELVFAPAEEWISRSDSEIIERTMKELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIP 503

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Narcissus pseudonarcissus (taxid: 39639)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
255560501	530	Phytoene dehydrogenase, putative [Ricinu	0.994	0.666	0.745	1e-159
359474834	530	PREDICTED: phytoene dehydrogenase-like [	0.994	0.666	0.737	1e-155
297744581	531	unnamed protein product [Vitis vinifera]	0.994	0.664	0.701	1e-147
449458684	533	PREDICTED: phytoene dehydrogenase-like [	0.994	0.662	0.658	1e-143
148910773	574	unknown [Picea sitchensis]	0.994	0.614	0.638	1e-141
302753308	530	hypothetical protein SELMODRAFT_74261 [S	0.994	0.666	0.584	1e-130
302804622	527	hypothetical protein SELMODRAFT_180688 [	0.994	0.669	0.584	1e-130
168030354	532	predicted protein [Physcomitrella patens	0.994	0.663	0.573	1e-128
116311132	529	B0103C08-B0602B01.15 [Oryza sativa Indic	0.994	0.667	0.573	1e-125
354566905	503	amine oxidase [Fischerella sp. JSC-11] g	0.991	0.699	0.573	1e-124

>gi|255560501|ref|XP_002521265.1| Phytoene dehydrogenase, putative [Ricinus communis] gi|223539533|gb|EEF41121.1| Phytoene dehydrogenase, putative [Ricinus communis]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 264/354 (74%), Positives = 304/354 (85%), Gaps = 1/354 (0%)

Query: 1   MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT 60
           +QGFW P++NIFSLV+ELGI PFT  ++SA YS EGLEVEFP+FQD  QLPTPLGTL+YT
Sbjct: 87  IQGFWNPYQNIFSLVNELGITPFTNRIRSALYSSEGLEVEFPVFQDQPQLPTPLGTLYYT 146

Query: 61  QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV 120
           QF+RLPLVDRLTSLPLMAAVIDFDNTD AWRKYDSITARELFKQFGCSE+LYRNV GPL+
Sbjct: 147 QFTRLPLVDRLTSLPLMAAVIDFDNTDTAWRKYDSITARELFKQFGCSEKLYRNVFGPLL 206

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
           QVGLFAPAEQCSAAATLGILY+I LAHQK+FD+VWCRGT+REKIF PWMDS+RT+GC FL
Sbjct: 207 QVGLFAPAEQCSAAATLGILYYISLAHQKDFDMVWCRGTIREKIFSPWMDSLRTKGCRFL 266

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKV 239
           DG +V DFI +EE  CI +VVC  ET +A AV+LAVGIS +QEL+KNS  L  REEFLKV
Sbjct: 267 DGEKVIDFIINEETSCIEEVVCSNETINADAVILAVGISKVQELVKNSAALSTREEFLKV 326

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
           LNLA ID+++ KL  D+KV + + SNACSGF DS +WTFFDLN ++DEHKD+  T +QAD
Sbjct: 327 LNLAGIDILTCKLQLDRKVNLAHASNACSGFDDSFSWTFFDLNALHDEHKDNQVTTLQAD 386

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353
           FYHANEL+PL D+ VV K +SYLSKCIKDF  A V+D +I RFPKSLTHFFPGS
Sbjct: 387 FYHANELLPLTDELVVTKTMSYLSKCIKDFENAVVIDKEISRFPKSLTHFFPGS 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474834|ref|XP_002278046.2| PREDICTED: phytoene dehydrogenase-like [Vitis vinifera]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/354 (73%), Positives = 302/354 (85%), Gaps = 1/354 (0%)

Query: 1   MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT 60
           + GFWYP+RNIFSLVDEL IKPFT W  SA YS EGLEVEFPIFQDL QLPTPLGTLFYT
Sbjct: 86  IHGFWYPYRNIFSLVDELDIKPFTNWTSSAHYSGEGLEVEFPIFQDLTQLPTPLGTLFYT 145

Query: 61  QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV 120
           QF RLPL+DRL+SLPLMAAV+DFDNTD AWRKYDSITARELF+QFG S+RLY++V  PL+
Sbjct: 146 QFVRLPLLDRLSSLPLMAAVVDFDNTDTAWRKYDSITARELFRQFGFSQRLYQDVFDPLL 205

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
           QVGLFAPAEQCSAAATLGILY+I+LAHQK+FD VWCRGT+R+KIF+PWMD MR  GCEFL
Sbjct: 206 QVGLFAPAEQCSAAATLGILYYIVLAHQKDFDFVWCRGTVRDKIFKPWMDYMRANGCEFL 265

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKV 239
           + RRVTDF+++EE  CIS+VVCG+E Y+A AVVLAVGISTLQ++IKNS  L  REEFLKV
Sbjct: 266 ESRRVTDFLFNEETGCISEVVCGREKYTADAVVLAVGISTLQDIIKNSAALSTREEFLKV 325

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
           LNLA IDV++VKL FD+KV +P   N CSGF DS  WT+FDLN I+DE+KDD  TV+QA+
Sbjct: 326 LNLAGIDVLTVKLQFDRKVNIPKAVNTCSGFDDSCGWTYFDLNAIHDEYKDDPVTVLQAN 385

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353
           FYHANEL+ LKD+ + AK +  LSK IKD   A+V+  +I RFPKSLTHFFPGS
Sbjct: 386 FYHANELLLLKDELIAAKVMHQLSKYIKDLENASVVGQEIERFPKSLTHFFPGS 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744581|emb|CBI37843.3| unnamed protein product [Vitis vinifera]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/355 (70%), Positives = 292/355 (82%), Gaps = 2/355 (0%)

Query: 1   MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT 60
           + GFWYP+RNIFSLVDEL IKPFT W  SA YS EGLEVEFPIFQDL QLPTPLGTLFYT
Sbjct: 86  IHGFWYPYRNIFSLVDELDIKPFTNWTSSAHYSGEGLEVEFPIFQDLTQLPTPLGTLFYT 145

Query: 61  QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV 120
           QF RLPL+DRL+SLPLMAAV+DFDNTD AWRKYDSITARELF+QFG S+RLY++V  PL+
Sbjct: 146 QFVRLPLLDRLSSLPLMAAVVDFDNTDTAWRKYDSITARELFRQFGFSQRLYQDVFDPLL 205

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
           QVGLFAPAEQCSAAATLGILY+I+LAHQK+FD VWCRGT+R+KIF+PWMD MR  GCEFL
Sbjct: 206 QVGLFAPAEQCSAAATLGILYYIVLAHQKDFDFVWCRGTVRDKIFKPWMDYMRANGCEFL 265

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLK 238
           + RRVTDF+++EE  CIS+VVCG+E Y+A A V+    S ++   L   + L  REEFLK
Sbjct: 266 ESRRVTDFLFNEETGCISEVVCGREKYTADAPVIMFSTSLMENHSLTLLAALSTREEFLK 325

Query: 239 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQA 298
           VLNLA IDV++VKL FD+KV +P   N CSGF DS  WT+FDLN I+DE+KDD  TV+QA
Sbjct: 326 VLNLAGIDVLTVKLQFDRKVNIPKAVNTCSGFDDSCGWTYFDLNAIHDEYKDDPVTVLQA 385

Query: 299 DFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353
           +FYHANEL+ LKD+ + AK +  LSK IKD   A+V+  +I RFPKSLTHFFPGS
Sbjct: 386 NFYHANELLLLKDELIAAKVMHQLSKYIKDLENASVVGQEIERFPKSLTHFFPGS 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458684|ref|XP_004147077.1| PREDICTED: phytoene dehydrogenase-like [Cucumis sativus] gi|449518113|ref|XP_004166088.1| PREDICTED: phytoene dehydrogenase-like [Cucumis sativus]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 233/354 (65%), Positives = 290/354 (81%), Gaps = 1/354 (0%)

Query: 1   MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT 60
           ++G+W P++NIF LVDELGI PFT W   A YS +GLEV+FP+FQDL QLPTPLGTL Y 
Sbjct: 90  IRGYWRPYKNIFGLVDELGIAPFTNWTAPAHYSVDGLEVKFPLFQDLPQLPTPLGTLIYP 149

Query: 61  QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV 120
           +F +LPLVDRLTSLPLMAAVIDFDNTD AWRKYDSITARELF+QFGCSE+LY +++ PL+
Sbjct: 150 EFPQLPLVDRLTSLPLMAAVIDFDNTDTAWRKYDSITARELFRQFGCSEKLYSSILNPLL 209

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
           QVGL+APAEQCSAAATLGILY+ ILAHQ +F+LVWCRGT +E IF+PW+D + ++GC F+
Sbjct: 210 QVGLYAPAEQCSAAATLGILYYTILAHQNDFNLVWCRGTAKEMIFQPWIDLLESKGCRFV 269

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKV 239
             R++TD   D+E  C+SD++CG+E Y A A+V AVGIS LQELI+NS  L  +EEF+KV
Sbjct: 270 GSRKITDVTVDDETNCLSDILCGRERYEADAIVFAVGISVLQELIRNSAALYTKEEFVKV 329

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
           LNL S+D+++VKLWFD+KV +P  SN+CS   +S  W+FF+LN I DE+KD+S TV+QAD
Sbjct: 330 LNLRSVDLLTVKLWFDRKVNIPTASNSCSTLDNSFGWSFFNLNAIQDEYKDESVTVLQAD 389

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353
           FYHA EL+PL D+ +V K  SYLS CIKDF  A V+  +I RFP+SLTHFFPGS
Sbjct: 390 FYHAIELLPLNDEAIVEKVKSYLSTCIKDFENAIVVKKEIGRFPESLTHFFPGS 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148910773|gb|ABR18453.1| unknown [Picea sitchensis]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 226/354 (63%), Positives = 286/354 (80%), Gaps = 1/354 (0%)

Query: 1   MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT 60
           + GFWYP+RNIF+L+DELGI+PFT W +SAQYS  GLEVE PIFQDL +LP+PLGT  YT
Sbjct: 131 IHGFWYPYRNIFALIDELGIQPFTNWTRSAQYSPNGLEVESPIFQDLPRLPSPLGTFIYT 190

Query: 61  QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV 120
           QF RLPL DRLTSLPLM AVIDFDNTD AW+KYD +TARELF+QFGCSER+Y++   P++
Sbjct: 191 QFQRLPLADRLTSLPLMYAVIDFDNTDNAWKKYDKLTARELFRQFGCSERVYQDAFNPML 250

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
            VGLFAP EQCSAAA+LG+LY+ IL HQ++FD+VWCRGT+ EKIF+PW++ M+TRGC+FL
Sbjct: 251 LVGLFAPGEQCSAAASLGMLYYFILGHQQDFDVVWCRGTVGEKIFKPWIEFMKTRGCQFL 310

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKV 239
             +RVTDF+ DE    IS V CG E ++A AV+ AVGI+ LQ ++ NS +L  REEFL V
Sbjct: 311 ANKRVTDFLLDENTGAISAVACGDEIFTADAVIFAVGITALQRIVYNSPVLQQREEFLNV 370

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
           LNL +IDV++V++W D+KV +P  SNAC GF DS  WTFFDL  ++DE+KD+  TV++AD
Sbjct: 371 LNLGAIDVLAVRIWLDRKVDIPKPSNACFGFDDSTGWTFFDLTALHDEYKDEPGTVVEAD 430

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353
           FYHAN+ +PLKDDQ+V K  +YL+ CI++F  A V+D  + RFPKS+THF PGS
Sbjct: 431 FYHANQFLPLKDDQIVEKVKAYLTTCIEEFGKANVVDQAVVRFPKSVTHFSPGS 484

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302753308|ref|XP_002960078.1| hypothetical protein SELMODRAFT_74261 [Selaginella moellendorffii] gi|300171017|gb|EFJ37617.1| hypothetical protein SELMODRAFT_74261 [Selaginella moellendorffii]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 207/354 (58%), Positives = 277/354 (78%), Gaps = 1/354 (0%)

Query: 1   MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT 60
           + GFWYP++NIFSLVDELG+KPFT W +S+QYS  GLEVE PIFQDL +LP+PLGT  YT
Sbjct: 91  IHGFWYPYKNIFSLVDELGLKPFTKWTRSSQYSPNGLEVESPIFQDLPRLPSPLGTFVYT 150

Query: 61  QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV 120
           QF RLPL DRLT+LPLM  V+DFDN+D AWRKYD  TARELF+ +GCSER+Y++   P++
Sbjct: 151 QFLRLPLWDRLTALPLMYTVVDFDNSDRAWRKYDKTTARELFRNYGCSERVYKDAFNPML 210

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
            VGLFAP EQCSAAATLG+LY+ ILAHQ +FD+VWCRGT+ EKIF+PW++ +  RGC FL
Sbjct: 211 LVGLFAPGEQCSAAATLGMLYYFILAHQSDFDVVWCRGTVGEKIFKPWLEVLNARGCRFL 270

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKV 239
            G++VTD   +E    +S V CG E ++A AV+ +VG++ +Q ++++S  L   EEFL +
Sbjct: 271 SGKKVTDLTINEPTGEVSGVRCGNELFNADAVIFSVGVTAMQRIVESSPALQQSEEFLDI 330

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
            NL +ID++ V+LW D+KV + + SNAC GF ++  WTFFDLN ++DE+KD+  TV++AD
Sbjct: 331 QNLGAIDILGVRLWLDRKVDINHPSNACFGFDETTGWTFFDLNALHDEYKDEKGTVVEAD 390

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353
           FYHAN+ +PL DDQ+V K ++YL+KCI +F+ A V+D  + RF K++THF PGS
Sbjct: 391 FYHANQFLPLSDDQIVKKVMTYLAKCIPEFAAAEVVDQAVVRFRKAVTHFSPGS 444

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302804622|ref|XP_002984063.1| hypothetical protein SELMODRAFT_180688 [Selaginella moellendorffii] gi|300148415|gb|EFJ15075.1| hypothetical protein SELMODRAFT_180688 [Selaginella moellendorffii]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 207/354 (58%), Positives = 277/354 (78%), Gaps = 1/354 (0%)

Query: 1   MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT 60
           + GFWYP++NIFSLVDELG+KPFT W +S+QYS  GLEVE PIFQDL +LP+PLGT  YT
Sbjct: 91  IHGFWYPYKNIFSLVDELGLKPFTKWTRSSQYSPNGLEVESPIFQDLPRLPSPLGTFVYT 150

Query: 61  QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV 120
           QF RLPL DRLT+LPLM  V+DFDN+D AWRKYD  TARELF+ +GCSER+Y++   P++
Sbjct: 151 QFLRLPLWDRLTALPLMYTVVDFDNSDRAWRKYDKTTARELFRNYGCSERVYKDAFNPML 210

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
            VGLFAP EQCSAAATLG+LY+ ILAHQ +FD+VWCRGT+ EKIF+PW++ +  RGC FL
Sbjct: 211 LVGLFAPGEQCSAAATLGMLYYFILAHQSDFDVVWCRGTVGEKIFKPWLEVLNARGCRFL 270

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKV 239
            G++VTD   +E    +S V CG E ++A AV+ +VG++ +Q ++++S  L   EEFL +
Sbjct: 271 SGKKVTDLTINEPTGEVSGVRCGNELFNADAVIFSVGVTAMQRIVESSPALQQSEEFLAI 330

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
            NL +ID++ V+LW D+KV + + SNAC GF ++  WTFFDLN ++DE+KD+  TV++AD
Sbjct: 331 QNLGAIDILGVRLWLDRKVDINHPSNACFGFDETTGWTFFDLNALHDEYKDEKGTVVEAD 390

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353
           FYHAN+ +PL D+Q+V K V+YL+KCI +F+ A V+D  + RF K++THF PGS
Sbjct: 391 FYHANQFLPLSDNQIVKKVVTYLAKCIPEFAAAEVVDQAVVRFRKAVTHFSPGS 444

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168030354|ref|XP_001767688.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681008|gb|EDQ67439.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 203/354 (57%), Positives = 275/354 (77%), Gaps = 1/354 (0%)

Query: 1   MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT 60
           + GFWYP++NIF+LVDELG+KPFT W KSAQ+S  GLEVE PIFQD+ QLP+PLGT  YT
Sbjct: 89  LAGFWYPYKNIFALVDELGLKPFTQWTKSAQFSPAGLEVESPIFQDMPQLPSPLGTFVYT 148

Query: 61  QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV 120
           QF RL L+DRLT+LPLM AV+DFDN++ AW  YDS +ARELF++FGCSER+Y++   P++
Sbjct: 149 QFKRLSLLDRLTALPLMYAVVDFDNSNRAWEDYDSRSARELFREFGCSERVYKDAFNPML 208

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
            VGLFAP E CSAAA LG+LY+ ILAHQ +FD+VWCRGT+ E IF+PW+ +M+  GC FL
Sbjct: 209 LVGLFAPGELCSAAACLGMLYYFILAHQPDFDVVWCRGTVGEMIFKPWVAAMQNSGCRFL 268

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKV 239
             +RV+D   DE    ++ V+CG+E + A AV+ +VGIS +Q+++ NS +L  REEF+  
Sbjct: 269 SNKRVSDLELDEATGSVTGVLCGEERFPADAVIFSVGISAMQKIVPNSKVLRTREEFVNT 328

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
            NL ++D+++V+LW D+K+ +   SNAC GF  +  WTFFDLN+++DE+KD+  TV++AD
Sbjct: 329 ANLGAVDILAVRLWLDRKIPIKMPSNACFGFDTTTGWTFFDLNELHDEYKDEPGTVVEAD 388

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353
           FYHAN+ +PL DDQ+V K + YL+ CI +F  A V+D  + RFPK++THFFPGS
Sbjct: 389 FYHANQFLPLSDDQIVKKVMDYLAVCIPEFGNANVVDQAVVRFPKAVTHFFPGS 442

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116311132|emb|CAH68058.1| B0103C08-B0602B01.15 [Oryza sativa Indica Group]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 203/354 (57%), Positives = 272/354 (76%), Gaps = 1/354 (0%)

Query: 1   MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT 60
           ++GFWYP+RNIFSLVDELGI PFTGW K+A YS +GL VEFPIF D  +LP P G L Y 
Sbjct: 86  LRGFWYPYRNIFSLVDELGISPFTGWTKAAYYSSQGLAVEFPIFHDQPRLPAPFGMLTYP 145

Query: 61  QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV 120
           +F  LPL+DRLTS+P+MAAVIDF+NTD AW KYD+++AR+LFK FGCS++LY+ +  P +
Sbjct: 146 EFPSLPLIDRLTSIPVMAAVIDFNNTDTAWMKYDAMSARDLFKMFGCSQKLYKEIFQPAI 205

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
           QV LFAP EQCSAAATLG+LY+ +L+HQ+N D + CRG + + IF PW+ S+  +G +F 
Sbjct: 206 QVALFAPGEQCSAAATLGMLYYYMLSHQENSDFLLCRGEVEDIIFSPWLKSLELQGLKFH 265

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKV 239
             R  T    +++  CIS +VCG+E + A A VLA G+S+LQ +IKNS  L +R+EF+ +
Sbjct: 266 GNRVPTSLAINKDTACISGIVCGEEVHEADAFVLANGLSSLQYIIKNSPFLQSRQEFVNL 325

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
           L+L++IDVVS+KLWFDKK+T+P V+N CSGF D   WTFFDL  IYD++ D S T+++A+
Sbjct: 326 LHLSTIDVVSIKLWFDKKITIPKVANVCSGFDDPSGWTFFDLTSIYDDYADKSTTIVEAE 385

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353
           FY+A+ L+PL D+Q+V++A S+L KCI+DF  ATV+   +RR PKS  HF PGS
Sbjct: 386 FYNASHLLPLNDEQIVSEASSHLIKCIQDFEEATVIQQLVRRSPKSTMHFLPGS 439

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|354566905|ref|ZP_08986076.1| amine oxidase [Fischerella sp. JSC-11] gi|353544564|gb|EHC14018.1| amine oxidase [Fischerella sp. JSC-11]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 203/354 (57%), Positives = 265/354 (74%), Gaps = 2/354 (0%)

Query: 1   MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT 60
           + GFWYP+RNIFSL++EL I PFT W +S+QYS  GLEVE PIFQDL QLPTPLGT  YT
Sbjct: 61  IHGFWYPYRNIFSLINELKINPFTSWTRSSQYSPAGLEVESPIFQDLPQLPTPLGTFIYT 120

Query: 61  QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV 120
           QF RLPL+DRL++LPL+ AVIDFDN+D AWR+YD +TARELFK FG S RLY     P++
Sbjct: 121 QFKRLPLIDRLSALPLLYAVIDFDNSDAAWRRYDFVTARELFKDFGVSARLYSESFEPML 180

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
            VGLFAP EQCSAAATLG+LYF ILAHQ +FD+VWCRGT+ EKIF PW+  +   G  FL
Sbjct: 181 LVGLFAPGEQCSAAATLGMLYFFILAHQPDFDVVWCRGTVGEKIFRPWIQHIEKLGGRFL 240

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI-KNSILCNREEFLKV 239
             +RVTD I D      +DVVCG+E + A AV+ AVG++ +++++  +S L  R EF  +
Sbjct: 241 TSKRVTDLIIDTNNRA-TDVVCGEEVFDADAVIFAVGVTGMKKIVSSSSSLQTRAEFRNL 299

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
            NL +IDV++ +LWFD+K+T+P  SNAC GF  +  WTFFDLN ++DE++ +S TV++ D
Sbjct: 300 NNLGAIDVLATRLWFDRKITIPRPSNACFGFDQTTGWTFFDLNALHDEYQHESGTVVEVD 359

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353
           FYHAN+ +PL+D  +V+    YL+ CI +F  A V+DH + R P+++THF PGS
Sbjct: 360 FYHANQFIPLEDQDIVSIVQRYLATCIPEFQQAKVIDHSVIRLPQAVTHFAPGS 413

Source: Fischerella sp. JSC-11

Species: Fischerella sp. JSC-11

Genus: Fischerella

Order: Stigonematales

Phylum: Cyanobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2129515	566	PDS3 "phytoene desaturase 3" [	0.960	0.602	0.196	5.6e-07

TAIR|locus:2129515 PDS3 "phytoene desaturase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 70/357 (19%), Positives = 146/357 (40%)

Query:     4 FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLF--YT 60
             F+  + N+ +L  ELGI     W + +  ++      EF  F   + LP PL  ++    
Sbjct:   149 FFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPDVLPAPLNGIWAILR 208

Query:    61 QFSRLPLVDRLT-SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPL 119
                 L   +++  ++ L+ A++            D ++ +E  ++ G  ER+   V   +
Sbjct:   209 NNEMLTWPEKIKFAIGLLPAMV---GGQAYVEAQDGLSVKEWMEKQGVPERVTDEVFIAM 265

Query:   120 VQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 179
              +   F   ++ S    L I     L  +    + +  G   E++  P +D +R+ G E 
Sbjct:   266 SKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPVVDHIRSLGGEV 324

Query:   180 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 239
                 R+     +++    S ++    T    A V A  +  L+ L+ +        F K+
Sbjct:   325 QLNSRIKKIELNDDGTVKSFLLTNGSTVEGDAYVFAAPVDILKLLLPDPWK-EIPYFKKL 383

Query:   240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
               L  + V++V +WFD+K+   N  +       +L   + D++    E+ D + ++++  
Sbjct:   384 DKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSNLLSVYADMSLTCKEYYDPNRSMLELV 441

Query:   300 FYHANELMPLKDDQVVAKAVSYLSKCIKDF-----STATVMDHKIRRFPKSLTHFFP 351
             F  A E +   D  ++   +  L K   D      S A ++ + + + P+S+    P
Sbjct:   442 FAPAEEWISRTDSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIP 498


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      355       355   0.00080  117 3  11 22  0.47    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  253 KB (2135 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.44u 0.10s 28.54t   Elapsed:  00:00:01
  Total cpu time:  28.44u 0.10s 28.54t   Elapsed:  00:00:01
  Start:  Sat May 11 15:16:15 2013   End:  Sat May 11 15:16:16 2013

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0009536 "plastid" evidence=IEA

GO:0016117 "carotenoid biosynthetic process" evidence=IEA;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016166 "phytoene dehydrogenase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	9e-57
TIGR03467	411	TIGR03467, HpnE, squalene-associated FAD-dependent	1e-07
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	2e-06
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	7e-06
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	3e-05
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	3e-04

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score =  191 bits (488), Expect = 9e-57
 Identities = 72/365 (19%), Positives = 128/365 (35%), Gaps = 16/365 (4%)

Query: 3   GFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQF 62
            F+  + N+ +L+ EL I+     ++    +  G            +   P  T     F
Sbjct: 56  VFFGCYYNLLTLLKELPIE-DRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAF 114

Query: 63  SRLPLVDRLTSLPLMAAVIDFDN-TDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQ 121
            RLP + R   +  +  + D     D + R+ D I+  +  K+ G  E  Y+    P+  
Sbjct: 115 LRLPQLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIAL 174

Query: 122 VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD 181
              F   E CSA   L IL   ++   +   L   RG+  E + +PW + +  RG +   
Sbjct: 175 ALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHA 234

Query: 182 GRRVTDFIYDEERCCIS--DVVCGKETYSAGAVVLAVGISTLQELIKN--SILCNREEFL 237
              V +   D  R                  A +  V    +Q   ++  S       F 
Sbjct: 235 DYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFD 294

Query: 238 KVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIY--------DEHK 289
            +  L  + V+++ L FD  VT     N   G  D+L W+   L  +         D  +
Sbjct: 295 GLYGLRLVPVITLHLRFDGWVTELTDRNQQFGI-DNLLWSDDTLGGVVADLALTSPDYVE 353

Query: 290 DDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF 349
             +   ++         +   D+ +VA     L + +   + A +    +    +SL   
Sbjct: 354 PGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEAKLKSSVLVN-QQSLYGL 412

Query: 350 FPGSL 354
            PGS 
Sbjct: 413 APGSY 417

Length = 485

>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 77/282 (27%), Positives = 111/282 (39%), Gaps = 26/282 (9%)

Query: 46  DLNQLPTPL----GTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITAREL 101
            L++LP PL    G L     S     D+L     + A+         +R  D  T  + 
Sbjct: 77  RLSRLPAPLHLARGLLRAPGLSWA---DKLALARALLALRRER-----FRALDDTTVGDW 128

Query: 102 FKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR 161
            +  G SERL   +  PL+   L  P E+ SAA    +L    LA +   DL+  R  L 
Sbjct: 129 LQAHGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLS 188

Query: 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221
           E   EP    + +RG E   G RV     +        V+ G+ET  A AVVLAV     
Sbjct: 189 ELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRAL-VLAGEETLPADAVVLAVPPRHA 247

Query: 222 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDL 281
             L+    L        +  L    + +V L  D+ V +P       G    LA   FD 
Sbjct: 248 ASLLPGEDL-----GALLTALGYSPITTVHLRLDRAVRLP---APMVGLVGGLAQWLFDR 299

Query: 282 NKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLS 323
            ++  E     A VI A    A +L+ L  +++  + V+ L 
Sbjct: 300 GQLAGEP-GYLAVVISA----ARDLVDLPREELADRIVAELR 336

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Length = 411

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 72/349 (20%), Positives = 126/349 (36%), Gaps = 44/349 (12%)

Query: 9   RNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLP 66
             +  L+DELG++    W   K+  Y +            L  L TPL  L   +F  L 
Sbjct: 60  EALLELLDELGLEDKLRWRETKTGYYVD----------GKLYPLGTPLELL---RFPHLS 106

Query: 67  LVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARE-LFKQFGCSERLYRNVIGPLVQVGLF 125
           L+D+   L L+  +         WR  D + A E L +     E +Y     PL++    
Sbjct: 107 LIDKF-RLGLLTLLARRIKD---WRALDKVPAEEWLRRW--SGEGVYEVFWEPLLESKFG 160

Query: 126 APAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR---EKIFEPWMDSMRTRGCEFLDG 182
             A+  SAA     +          F      G L      + +   +++  RG E   G
Sbjct: 161 DYADDVSAAWLWSRIKRRGNRRYSLFGEK--LGYLEGGFATLIDALAEAIEARGGEIRLG 218

Query: 183 RRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 242
             VT  + D     ++ V    E     AV+       L  L+ +          ++   
Sbjct: 219 TPVTSVVIDGGG--VTGVEVDGEEEDFDAVISTAPPPILARLVPDLPADVLARLRRIDYQ 276

Query: 243 ASIDVVSVKLWFDKKVT---VPNVSNACSGFGDSLAWT-FFDLNKIYDEHKDDSATVIQA 298
             +  + +KL   + +T     N+++  + FG  +  T      +   EH      ++  
Sbjct: 277 GVV-CMVLKL--RRPLTDYYWLNINDPGAPFGGVIEHTNLVPPERYGGEH------LVYL 327

Query: 299 DFYHA--NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS 345
             Y    + L  + D++++ + +SYL K   DF    V   +I R P +
Sbjct: 328 PKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYA 376

Length = 434

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 64/277 (23%), Positives = 114/277 (41%), Gaps = 31/277 (11%)

Query: 4   FWYPFRNIFSLVDELG------IKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTL 57
           F+  + N+F L+ ++G      +K  T    +       L+  F      N L       
Sbjct: 56  FFGCYANLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKA----- 110

Query: 58  FYTQFSRLPLVDRL-------TSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSER 110
           F+T  S+L  VD+L       TS P++  ++D+D      R  D I+  E F   G S  
Sbjct: 111 FFTT-SQLKWVDKLRNALALGTS-PIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLG 168

Query: 111 LYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLV-WCRGTLREKIFEPWM 169
             + +  P+     F   E  SA   L I  F++ A +     +   +G+  + + +P +
Sbjct: 169 SIKRMWDPIAYALGFIDCENISARCMLTI--FMLFAAKTEASKLRMLKGSPDKYLTKPIL 226

Query: 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-------CGKETYSAGAVVLAVGISTLQ 222
           + +  RG +F    +V +  Y++     + V         GK+   A A V A  +  ++
Sbjct: 227 EYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIK 286

Query: 223 ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT 259
            L+        EEF  +  L ++ V +V+L +D  VT
Sbjct: 287 RLLPQEWR-QFEEFDNIYKLDAVPVATVQLRYDGWVT 322

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 55/351 (15%), Positives = 99/351 (28%), Gaps = 15/351 (4%)

Query: 10  NIFSLVDELGIKPFTGWMKSAQYSEEGL-EVEFPIFQDLNQLPTPLGTLFYTQFSRLPLV 68
           N+ +L+ ELG++               L     P       LP PL  L  +       +
Sbjct: 53  NLLNLLLELGLELGLLLFPFPGDPFVRLKYRGGPYPDLPGDLPPPLFLLLRSLLELELSL 112

Query: 69  DRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPA 128
           +      L+  V                 +  L    G  E         L     F P 
Sbjct: 113 EEPIRRALLLLVALLLLAPELLELDLLSFSDLLSAA-GFLELFLLLFRSLLAGALGFLPL 171

Query: 129 EQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRT-RGCEFLDGRRVTD 187
           E  +  A L +  F +      F        L        + +     G       RV  
Sbjct: 172 ELSARLALLSLRLFDLEDGGVVFPGGGFTLPLGGLPQL--IAAALGLLGGRVRLNTRVRS 229

Query: 188 FIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNRE-EFLKVLNLASID 246
                +   +        T  A AV++ V +  L+ ++    L   + E ++ L   S+ 
Sbjct: 230 ITKSGDGVTV--TTVDGRTIEADAVIVTVPLGVLKRILFLPPLPAAKQEAIRNLGFGSVS 287

Query: 247 VVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANEL 306
            V ++          ++       G S      D +      +    + +  D   A EL
Sbjct: 288 KVFLEFETPFWPENGDLFGLLVTDGLSRGGYVLDTSPSSGSGRGVLLSYVLGD--AAREL 345

Query: 307 MPLKDDQVVAKAVSYLSK-----CIKDFSTATVMDHKIRRFPKSLTHFFPG 352
             L D++++   +  L K      + D     V D     + +    + P 
Sbjct: 346 EDLSDEELLEAVLRDLRKLLGPEDVPDPVNFLVSDWHTDPYARGSYSYPPV 396

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 81/365 (22%), Positives = 152/365 (41%), Gaps = 34/365 (9%)

Query: 6   YPFRNIFSLVDELGIKPFTGW----MKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQ 61
           YP  N+  L+ EL I+    W    M   Q  + G    F    D   +P P   +    
Sbjct: 60  YP--NMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRF----DFPDIPAPFNGVA--- 110

Query: 62  FSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKY----DSITARELFKQFGCSERLYRNVIG 117
            + L   D LT    +   I      V  +KY    D  T  E  ++ G  ER+   V  
Sbjct: 111 -AILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGVPERVNDEVFI 169

Query: 118 PLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGC 177
            + +   F   ++ S    L  L    L  +    + +  G   E++ +P +D + +RG 
Sbjct: 170 AMSKALNFINPDELSMTVVLTALNRF-LQERHGSKMAFLDGAPPERLCQPIVDYITSRGG 228

Query: 178 EFLDGRRVTDFIYDEERCCISDVVCGKETY-----SAGAVVLAVGISTLQELIKNSILCN 232
           E     R+ + + +E+      V+   E       +A A V A+ +   + L+       
Sbjct: 229 EVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQP-WKQ 287

Query: 233 REEFLKVLNLASIDVVSVKLWFDKKV-TVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDD 291
              F K+  L  + V++V +WFD+K+ TV ++  + S     L   + D+++   E+ D 
Sbjct: 288 MPFFQKLNGLEGVPVINVHIWFDRKLTTVDHLLFSRS----PLLSVYADMSETCKEYADP 343

Query: 292 SATVIQADFYHANELMPLKDDQVVAKAVSYLSKC----IKDFSTATVMDHKIRRFPKSLT 347
             ++++  F  A + +   D++++   ++ L+K     IK  S A ++ +K+ + P+S+ 
Sbjct: 344 DKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVY 403

Query: 348 HFFPG 352
              PG
Sbjct: 404 KTTPG 408

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
PLN02487	569	zeta-carotene desaturase	100.0
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	100.0
PLN02612	567	phytoene desaturase	100.0
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	100.0
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.98
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.97
PRK07233	434	hypothetical protein; Provisional	99.96
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.95
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.95
PRK07208	479	hypothetical protein; Provisional	99.93
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.92
PLN02576	496	protoporphyrinogen oxidase	99.92
COG3349	485	Uncharacterized conserved protein [Function unknow	99.89
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.79
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.74
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.7
PLN02268	435	probable polyamine oxidase	99.69
PLN02529	738	lysine-specific histone demethylase 1	99.63
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.62
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.59
PLN02676	487	polyamine oxidase	99.56
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.55
PLN02568	539	polyamine oxidase	99.55
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.51
PLN03000	881	amine oxidase	99.5
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.5
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.49
PLN02976	1713	amine oxidase	99.43
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.28
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.11
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.1
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	99.08
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.04
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.94
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.86
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	98.65
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	98.13
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	97.9
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.49
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.37
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.21
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.18
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	97.15
COG2081	408	Predicted flavoproteins [General function predicti	97.09
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	96.99
PLN02464	627	glycerol-3-phosphate dehydrogenase	96.97
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	96.95
COG0579	429	Predicted dehydrogenase [General function predicti	96.92
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.83
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.7
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	96.61
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.55
PTZ00383	497	malate:quinone oxidoreductase; Provisional	96.52
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.51
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	96.35
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	96.3
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.23
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	96.16
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	96.12
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	96.08
PRK11728	393	hydroxyglutarate oxidase; Provisional	95.94
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	95.94
PRK08274	466	tricarballylate dehydrogenase; Validated	95.89
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	95.84
PRK10157	428	putative oxidoreductase FixC; Provisional	95.77
TIGR00275	400	flavoprotein, HI0933 family. The model when search	95.72
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.46
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	95.46
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.42
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	95.39
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	95.39
PRK10015	429	oxidoreductase; Provisional	95.37
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	95.34
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	95.31
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.29
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.29
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	95.28
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	95.24
PRK07121	492	hypothetical protein; Validated	95.17
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.17
PRK06175	433	L-aspartate oxidase; Provisional	95.01
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	94.98
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	94.96
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	94.95
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	94.86
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	94.8
PRK05257	494	malate:quinone oxidoreductase; Validated	94.79
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	94.69
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	94.69
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.68
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	94.57
PRK07190	487	hypothetical protein; Provisional	94.54
PRK08401	466	L-aspartate oxidase; Provisional	94.52
PRK06847	375	hypothetical protein; Provisional	94.51
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	94.41
PRK12839	572	hypothetical protein; Provisional	94.28
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	94.25
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	94.24
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	94.24
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	94.12
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	94.1
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	94.09
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	94.06
PRK12842	574	putative succinate dehydrogenase; Reviewed	94.02
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	93.99
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.8
PRK13339	497	malate:quinone oxidoreductase; Reviewed	93.76
PRK06116	450	glutathione reductase; Validated	93.75
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	93.75
PRK07395	553	L-aspartate oxidase; Provisional	93.73
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	93.6
PRK07512	513	L-aspartate oxidase; Provisional	93.53
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.5
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	93.42
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.41
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	93.4
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	93.4
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	93.39
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	93.38
COG4716	587	Myosin-crossreactive antigen [Function unknown]	93.37
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	93.35
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.26
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	93.25
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	93.2
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	93.12
PRK08275	554	putative oxidoreductase; Provisional	93.1
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	93.1
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	93.09
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	93.07
PRK06184	502	hypothetical protein; Provisional	93.06
PRK06834	488	hypothetical protein; Provisional	93.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	92.96
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	92.7
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	92.69
PRK07045	388	putative monooxygenase; Reviewed	92.68
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	92.64
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	92.6
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	92.46
PRK14694	468	putative mercuric reductase; Provisional	92.44
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	92.41
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	92.39
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	92.33
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	92.3
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	92.16
PRK14989	847	nitrite reductase subunit NirD; Provisional	92.06
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	92.0
PRK14727	479	putative mercuric reductase; Provisional	91.98
PLN02697	529	lycopene epsilon cyclase	91.89
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	91.82
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	91.76
PRK07804	541	L-aspartate oxidase; Provisional	91.72
PLN02507	499	glutathione reductase	91.69
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	91.69
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	91.66
PRK08163	396	salicylate hydroxylase; Provisional	91.65
PRK07845	466	flavoprotein disulfide reductase; Reviewed	91.55
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	91.5
PRK09897	534	hypothetical protein; Provisional	91.41
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	91.41
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	91.32
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	91.31
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	91.27
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	91.25
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	91.11
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	91.1
PRK13748	561	putative mercuric reductase; Provisional	90.9
PRK07588	391	hypothetical protein; Provisional	90.85
PRK08071	510	L-aspartate oxidase; Provisional	90.82
PLN02815	594	L-aspartate oxidase	90.75
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	90.64
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	90.56
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	90.36
PRK06370	463	mercuric reductase; Validated	90.33
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	90.32
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	90.31
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	90.24
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	90.19
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	90.12
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	90.04
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	89.99
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	89.94
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	89.88
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	89.86
PRK06185	407	hypothetical protein; Provisional	89.78
PRK08244	493	hypothetical protein; Provisional	89.61
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	89.55
PLN02463	447	lycopene beta cyclase	89.55
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	89.52
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	89.49
PRK09126	392	hypothetical protein; Provisional	89.47
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	89.43
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	89.41
TIGR02053	463	MerA mercuric reductase. This model represents the	89.37
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	89.2
PRK08013	400	oxidoreductase; Provisional	89.2
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	89.11
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	89.1
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	88.99
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	88.88
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	88.85
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	88.82
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	88.8
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	88.75
PRK09077	536	L-aspartate oxidase; Provisional	88.7
PTZ00052	499	thioredoxin reductase; Provisional	88.64
PTZ00058	561	glutathione reductase; Provisional	88.36
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	88.35
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	88.19
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	88.14
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	87.36
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	87.12
PRK06996	398	hypothetical protein; Provisional	86.9
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	86.86
PRK05868	372	hypothetical protein; Validated	86.86
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	86.8
PLN02546	558	glutathione reductase	86.68
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	86.28
PRK10262	321	thioredoxin reductase; Provisional	86.12
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	86.01
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	85.85
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	85.82
PRK02106	560	choline dehydrogenase; Validated	85.69
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	85.46
PRK06126	545	hypothetical protein; Provisional	85.44
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	85.34
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	84.75
PLN02661	357	Putative thiazole synthesis	84.44
PRK13512	438	coenzyme A disulfide reductase; Provisional	84.43
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	84.16
PRK07236	386	hypothetical protein; Provisional	84.04
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	83.73
PRK07846	451	mycothione reductase; Reviewed	83.26
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	83.06
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	82.73
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	82.35
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	82.32
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	82.2
PRK06475	400	salicylate hydroxylase; Provisional	81.98
PRK08132	547	FAD-dependent oxidoreductase; Provisional	81.97
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	81.73
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	81.7
PRK12831	464	putative oxidoreductase; Provisional	81.64
PRK06753	373	hypothetical protein; Provisional	80.66
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	80.5
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	80.41
PRK11445	351	putative oxidoreductase; Provisional	80.34

>PLN02487 zeta-carotene desaturase

Probab=100.00  E-value=2.4e-36  Score=287.63  Aligned_cols=349  Identities=19%  Similarity=0.257  Sum_probs=258.8

Q ss_pred             CcccccCCchHHHHHHHhCCCCCCCcc-cceee-cCCCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchhh--
Q 018455            1 MQGFWYPFRNIFSLVDELGIKPFTGWM-KSAQY-SEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLP--   75 (355)
Q Consensus         1 ~H~~~~~y~~~~~l~~elGl~~~~~~~-~~~~~-~~~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~~--   75 (355)
                      +|.++++|+++++++++||+.+...+. ....+ +.+|+... ..+..  +++.|++... +++++.+++.+|+++..  
T Consensus       129 ~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~-~~~~~--p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l  205 (569)
T PLN02487        129 LHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGE-LDFRF--PVGAPLHGIKAFLTTNQLEPYDKARNALAL  205 (569)
T ss_pred             eeEecCCcHHHHHHHHhcCCcccccccccceeEEecCCEEee-eccCC--CCCchhhhHHHHHcCCCCCHHHHHhhcccc
Confidence            599999999999999999998654433 23323 34454211 11221  4667776555 78999999999998632  


Q ss_pred             ----HHHHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCc
Q 018455           76 ----LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF  151 (355)
Q Consensus        76 ----~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~  151 (355)
                          ++.++.+.+...+.+...|++|+.+|+++++.+++++++||+|++.++++.+++++|+.+++..|..+ ..+..++
T Consensus       206 ~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~-~~~~~~~  284 (569)
T PLN02487        206 ATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLF-ATKTEAS  284 (569)
T ss_pred             cccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-hhcCCcc
Confidence                11121111101233456788999999999988888999999999999999999999999999988653 2244456


Q ss_pred             ceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCC-CC--eEEEEEe--C--CeEEecCEEEEccChhhHHHh
Q 018455          152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RC--CISDVVC--G--KETYSAGAVVLAVGISTLQEL  224 (355)
Q Consensus       152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~-~~--~v~~v~~--~--g~~~~ad~VV~a~p~~~~~~l  224 (355)
                      ++.|++||+++.+.+++++.|+++|++|+++++|++|+.+++ +|  ++++|++  +  ++++.||+||+|+|++.+.+|
T Consensus       285 ~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L  364 (569)
T PLN02487        285 LLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL  364 (569)
T ss_pred             eeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh
Confidence            789999999977889999999999999999999999999742 12  4778877  3  347899999999999999999


Q ss_pred             hhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCc------ceeccC-----CCcccee-eEcccccc-cc-cC
Q 018455          225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN------ACSGFG-----DSLAWTF-FDLNKIYD-EH-KD  290 (355)
Q Consensus       225 ~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~------~~~~~~-----~~~~~~~-~~~~~~~~-~~-~~  290 (355)
                      +++. .+..+.+.++.++.+.++++++++||+++..+..-+      .+.+.+     ....|.+ ++.....+ ++ ..
T Consensus       365 lp~~-~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~  443 (569)
T PLN02487        365 LPEQ-WREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKE  443 (569)
T ss_pred             CCch-hhccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHccc
Confidence            9875 233455678888988999999999999876432111      012222     1222322 34211111 12 22


Q ss_pred             CCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCCC
Q 018455          291 DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSL  354 (355)
Q Consensus       291 ~~g~~l~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~  354 (355)
                      .+|+++.+++++++++..++++|+++.++++|.++||.++..++.+..+++++++++.+.||+.
T Consensus       444 ~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~  507 (569)
T PLN02487        444 GEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMD  507 (569)
T ss_pred             CCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCcc
Confidence            4567888888888889999999999999999999999877677888999999999999999975

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=100.00  E-value=2.2e-34  Score=272.22  Aligned_cols=349  Identities=19%  Similarity=0.274  Sum_probs=253.0

Q ss_pred             CcccccCCchHHHHHHHhCCCCCCCcc-cceeec-CCCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchhhHH
Q 018455            1 MQGFWYPFRNIFSLVDELGIKPFTGWM-KSAQYS-EEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLM   77 (355)
Q Consensus         1 ~H~~~~~y~~~~~l~~elGl~~~~~~~-~~~~~~-~~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~~~~   77 (355)
                      +|+|++.|++++++++++|+.+...+. ....+. .+|+... ..+.  .+++.|++... +++++.+++.+|+++....
T Consensus        53 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~  129 (474)
T TIGR02732        53 LHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGE-LDFR--FATGAPFNGLKAFFTTSQLKWVDKLRNALAL  129 (474)
T ss_pred             eEEecCchHHHHHHHHHcCCccccccccceeEEEcCCCcccc-cccC--CCCCCchhhhHHHhcCCCCCHHHHHHHHHHh
Confidence            589999999999999999998655444 233342 3343211 1122  24667776555 7889999999999865422


Q ss_pred             H--HHh----ccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCc
Q 018455           78 A--AVI----DFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF  151 (355)
Q Consensus        78 ~--~~~----~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~  151 (355)
                      .  ...    +.+...+.+...+++|+.+|+++++.++..+++||+|++.++++.+++++|+.+++.+++.+. ....++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~-~~~~~s  208 (474)
T TIGR02732       130 GTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA-AKTEAS  208 (474)
T ss_pred             hhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCcc
Confidence            1  111    111011234457889999999999888888999999999999999999999999998887543 445566


Q ss_pred             ceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecC--CCC-eEEEEEe-CC---eEEecCEEEEccChhhHHHh
Q 018455          152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--ERC-CISDVVC-GK---ETYSAGAVVLAVGISTLQEL  224 (355)
Q Consensus       152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~--~~~-~v~~v~~-~g---~~~~ad~VV~a~p~~~~~~l  224 (355)
                      .+.+++||+++.+.+++++.|++.|++|+++++|++|+.++  ++. ++++|.+ +|   +++.||+||+|+|++.+.+|
T Consensus       209 ~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L  288 (474)
T TIGR02732       209 KLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL  288 (474)
T ss_pred             eeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh
Confidence            78899999988888999999999999999999999999864  222 3666766 33   56899999999999999999


Q ss_pred             hhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCc---c---eeccC-----CCcccee-eEcccccc-ccc-C
Q 018455          225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN---A---CSGFG-----DSLAWTF-FDLNKIYD-EHK-D  290 (355)
Q Consensus       225 ~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~---~---~~~~~-----~~~~~~~-~~~~~~~~-~~~-~  290 (355)
                      +++.. +..+.+..+..+.+.++++++++|++++..+...+   .   +.+.+     ....|.+ ++.....+ ++. .
T Consensus       289 l~~~~-~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (474)
T TIGR02732       289 LPQEW-RQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKE  367 (474)
T ss_pred             CChhh-hcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhcc
Confidence            98742 22344557788888999999999998776422100   0   01111     1112322 23221112 232 1


Q ss_pred             CCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCCC
Q 018455          291 DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSL  354 (355)
Q Consensus       291 ~~g~~l~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~  354 (355)
                      ..+.+++++++.+.++.+++++++++.++++|+++||.....+++++.+.++|+|++.+.||+.
T Consensus       368 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~  431 (474)
T TIGR02732       368 GQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMD  431 (474)
T ss_pred             CCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCc
Confidence            2345567777777778889999999999999999999877677888899999999999999975

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02612 phytoene desaturase

Probab=100.00  E-value=1e-32  Score=265.64  Aligned_cols=342  Identities=18%  Similarity=0.302  Sum_probs=250.4

Q ss_pred             CcccccCCchHHHHHHHhCCCCCCCcc-cceeec-C--CCceecccccccCCCCCCCccccc-cc-cCCCCCHHhhhchh
Q 018455            1 MQGFWYPFRNIFSLVDELGIKPFTGWM-KSAQYS-E--EGLEVEFPIFQDLNQLPTPLGTLF-YT-QFSRLPLVDRLTSL   74 (355)
Q Consensus         1 ~H~~~~~y~~~~~l~~elGl~~~~~~~-~~~~~~-~--~g~~~~~~~~~~~~~~p~p~~~~~-~~-~~~~l~~~~~~~~~   74 (355)
                      +|.|++.|+++++|+++||+++...+. ...++. .  .+.. +...+..  .+|.|++... ++ ..+.+++.+|+++.
T Consensus       147 ~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~--~~P~~l~~~~~~l~~~~~ls~~~kl~~~  223 (567)
T PLN02612        147 LHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEF-SRFDFPE--VLPAPLNGIWAILRNNEMLTWPEKIKFA  223 (567)
T ss_pred             ceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCce-eeCcCch--hcCChhhhhHHHHhcCccCCHHHHHHHH
Confidence            589999999999999999998765554 223332 1  2221 1111211  2566665444 44 46678999999854


Q ss_pred             h-HHHHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcce
Q 018455           75 P-LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL  153 (355)
Q Consensus        75 ~-~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~  153 (355)
                      . +......   ..+.+..+|++|+.+|++++++++.+.+.+|+|++.++++.+++++|+.+++..+..+ +....++..
T Consensus       224 ~~~~~~~~~---~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~-l~~~~gs~~  299 (567)
T PLN02612        224 IGLLPAIVG---GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF-LQEKHGSKM  299 (567)
T ss_pred             HhhhHHhcc---cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH-HhccCCceE
Confidence            3 2111111   1233456789999999999999999999999999999999999999999999888875 455556677


Q ss_pred             EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhcccccC
Q 018455          154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCN  232 (355)
Q Consensus       154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~  232 (355)
                      .++.|+..+.++++|++.+++.|++|++|++|++|+.+++ +++++|++ +|++++||+||+|+|++.+++|++.... .
T Consensus       300 ~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~-~  377 (567)
T PLN02612        300 AFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-GTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK-E  377 (567)
T ss_pred             eeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC-CcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc-C
Confidence            8888887455889999999999999999999999999765 45556776 6889999999999999999988875421 1


Q ss_pred             cHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeCCCCCCCCCHH
Q 018455          233 REEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDD  312 (355)
Q Consensus       233 ~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~e  312 (355)
                      .+++++++++.+.++++++++|+++++... ...++... +...++++.+...+.+.+++.+++.+++..+++|..++++
T Consensus       378 ~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~-~~~~~~~~-~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sde  455 (567)
T PLN02612        378 IPYFKKLDKLVGVPVINVHIWFDRKLKNTY-DHLLFSRS-PLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDE  455 (567)
T ss_pred             cHHHHHHHhcCCCCeEEEEEEECcccCCCC-CceeecCC-CCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHH
Confidence            244556667778889999999999987422 22233322 2223345555544445444556776666677889999999


Q ss_pred             HHHHHHHHHHhhhcccCC-----CceeeeeeEEecCCCccccCCCC
Q 018455          313 QVVAKAVSYLSKCIKDFS-----TATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       313 e~~~~~~~~l~~~~p~~~-----~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      |+++.++++|+++||+..     ...++.+.+.+.|.+.+.+.||.
T Consensus       456 ei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~  501 (567)
T PLN02612        456 DIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNC  501 (567)
T ss_pred             HHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCC
Confidence            999999999999998752     25577788999999988887775

>TIGR02731 phytoene_desat phytoene desaturase

Probab=100.00  E-value=1.1e-30  Score=247.56  Aligned_cols=341  Identities=20%  Similarity=0.326  Sum_probs=238.6

Q ss_pred             CcccccCCchHHHHHHHhCCCCCCCcc-cceeecC---CCceecccccccCCCCCCCccccc-cc-cCCCCCHHhhhchh
Q 018455            1 MQGFWYPFRNIFSLVDELGIKPFTGWM-KSAQYSE---EGLEVEFPIFQDLNQLPTPLGTLF-YT-QFSRLPLVDRLTSL   74 (355)
Q Consensus         1 ~H~~~~~y~~~~~l~~elGl~~~~~~~-~~~~~~~---~g~~~~~~~~~~~~~~p~p~~~~~-~~-~~~~l~~~~~~~~~   74 (355)
                      .|.++++|+++++++++||+.....+. ...++..   +|.. .  .+. .+.+|.|++... ++ ..+.+++.+|+++.
T Consensus        53 ~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (453)
T TIGR02731        53 LHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTF-S--RFD-FPDIPAPFNGVAAILRNNDMLTWPEKIKFA  128 (453)
T ss_pred             cceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcce-e--ecc-CCCCCCCHHHHHHHhcCcCCCCHHHHHHHH
Confidence            488899999999999999998655443 2233322   2221 1  121 134556665433 33 24468899998855


Q ss_pred             hHHHHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceE
Q 018455           75 PLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLV  154 (355)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~  154 (355)
                      ..+..... . ..+.+..+|++|+.+|+++.++++.+.+.+++|++.++++.+|+++|+.+++..++.++ .+..+....
T Consensus       129 ~~~~~~~~-~-~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~-~~~~g~~~~  205 (453)
T TIGR02731       129 IGLLPAIV-R-GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL-QERHGSKMA  205 (453)
T ss_pred             HHhHHHHh-c-CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-hcCCCCeeE
Confidence            32222110 0 12334567899999999999999999999999999999999999999999998888753 434444556


Q ss_pred             EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe-----EEecCEEEEccChhhHHHhhhcc
Q 018455          155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE-----TYSAGAVVLAVGISTLQELIKNS  228 (355)
Q Consensus       155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~-----~~~ad~VV~a~p~~~~~~l~~~~  228 (355)
                      +..|+....+.+++.+.+++.|++|++|++|++|+.+++ +++++|++ +|+     ++.||.||+|+|++.+.+|++..
T Consensus       206 ~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~  284 (453)
T TIGR02731       206 FLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQP  284 (453)
T ss_pred             eecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchh
Confidence            666664333789999999999999999999999987665 45667776 444     78999999999999999998653


Q ss_pred             cccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeCCCCCCC
Q 018455          229 ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMP  308 (355)
Q Consensus       229 ~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~  308 (355)
                      . +.....+.+.++.+.++++++++++++++..  .+.++..+... ...++.+....++.++++.++++.+..++.+..
T Consensus       285 ~-~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (453)
T TIGR02731       285 W-KQMPFFQKLNGLEGVPVINVHIWFDRKLTTV--DHLLFSRSPLL-SVYADMSETCKEYADPDKSMLELVFAPAADWIG  360 (453)
T ss_pred             h-hcCHHHHHhhcCCCCcEEEEEEEEccccCCC--CceeeeCCCcc-eeecchhhhChhhcCCCCeEEEEEecChhhhhc
Confidence            2 1123444666777779999999999998732  22233322222 122333322122222445666654445667788


Q ss_pred             CCHHHHHHHHHHHHhhhcccC----CCceeeeeeEEecCCCccccCCCC
Q 018455          309 LKDDQVVAKAVSYLSKCIKDF----STATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       309 ~~~ee~~~~~~~~l~~~~p~~----~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      +++||+++.++++|+++||..    ...+++++.|.++|++.+.+.||.
T Consensus       361 ~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~  409 (453)
T TIGR02731       361 RSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGR  409 (453)
T ss_pred             CCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCC
Confidence            999999999999999999852    245688899999999998888884

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.98  E-value=6.3e-30  Score=240.38  Aligned_cols=329  Identities=23%  Similarity=0.274  Sum_probs=234.5

Q ss_pred             CcccccCCchHHHHHHHhCCCCCCC-cc-cceeecCCCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchhhHH
Q 018455            1 MQGFWYPFRNIFSLVDELGIKPFTG-WM-KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLM   77 (355)
Q Consensus         1 ~H~~~~~y~~~~~l~~elGl~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~~~~   77 (355)
                      .|.+++.|+++.+|++|||++.... +. ...++..+|..+   .+.. .++|.|+.... +++++.+++.++.++.+.+
T Consensus        42 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~  117 (419)
T TIGR03467        42 QHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGGRLS---RLRL-SRLPAPLHLARGLLRAPGLSWADKLALARAL  117 (419)
T ss_pred             CEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCCCCce---eecC-CCCCCCHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            3889999999999999999986544 22 222332334321   1221 24566665433 5677889999999877655


Q ss_pred             HHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEec
Q 018455           78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCR  157 (355)
Q Consensus        78 ~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
                      ..+.+.     ....+|++|+.+|++++++++++++.+++|++.++++.+|+++|+.+++..++..+.....+..+.+++
T Consensus       118 ~~~~~~-----~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  192 (419)
T TIGR03467       118 LALRRT-----RFRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPR  192 (419)
T ss_pred             HHHHhc-----CccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeC
Confidence            443321     113478899999999988899999999999999999999999999999888765432322334578899


Q ss_pred             CCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEE-eCCeEEecCEEEEccChhhHHHhhhcccccCcHHH
Q 018455          158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CGKETYSAGAVVLAVGISTLQELIKNSILCNREEF  236 (355)
Q Consensus       158 gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~  236 (355)
                      ||+++++.++|++.|++.|++|++|++|++|+.++++  +..+. .+|+++.||+||+|+|++++.+|++++.     ..
T Consensus       193 gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~--~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~~-----~~  265 (419)
T TIGR03467       193 VPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGG--IRALVLSGGETLPADAVVLAVPPRHAASLLPGED-----LG  265 (419)
T ss_pred             CCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCc--ceEEEecCCccccCCEEEEcCCHHHHHHhCCCch-----HH
Confidence            9998866677999998899999999999999998753  43223 3678899999999999999999986521     12


Q ss_pred             HhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeCCCCCCCCCHHHHHH
Q 018455          237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVA  316 (355)
Q Consensus       237 ~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~ee~~~  316 (355)
                      +.+.++++.++.++++.+++++|.+.....+  ...+..| +++.+...     +...++.+.+..++++..++++++++
T Consensus       266 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~  337 (419)
T TIGR03467       266 ALLTALGYSPITTVHLRLDRAVRLPAPMVGL--VGGLAQW-LFDRGQLA-----GEPGYLAVVISAARDLVDLPREELAD  337 (419)
T ss_pred             HHHhhcCCcceEEEEEEeCCCcCCCCCeeee--cCCceeE-EEECCcCC-----CCCCEEEEEEecchhhccCCHHHHHH
Confidence            3567778889999999999998632221111  2233444 34422211     12233333333456677889999999


Q ss_pred             HHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          317 KAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       317 ~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      .++++|+++||......+++..+.+|+++.|.+.||.
T Consensus       338 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  374 (419)
T TIGR03467       338 RIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGL  374 (419)
T ss_pred             HHHHHHHHhcCccccCCccceEEEEccCCccccCCcc
Confidence            9999999999865434567778899999988888874

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.97  E-value=1.5e-28  Score=225.13  Aligned_cols=320  Identities=19%  Similarity=0.258  Sum_probs=217.5

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcc--cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAA   79 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~   79 (355)
                      |.|+...+++++|++|||+++...+.  ....+..+|+      ++   ++|.+. .   +..|.+...+.+...+.+..
T Consensus        56 ~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~~gk------l~---p~P~~~-i---~~ip~~~~~~~~~~~~~~~~  122 (444)
T COG1232          56 HHFLARKEEILDLIKELGLEDKLLWNSTARKYIYYDGK------LH---PIPTPT-I---LGIPLLLLSSEAGLARALQE  122 (444)
T ss_pred             hheecchHHHHHHHHHhCcHHhhccCCcccceEeeCCc------EE---ECCccc-e---eecCCccccchhHHHHHHHh
Confidence            55666679999999999999877755  2442226675      33   344333 1   12223322233333332223


Q ss_pred             HhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCC----------
Q 018455           80 VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK----------  149 (355)
Q Consensus        80 ~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~----------  149 (355)
                      ...    .+.+...++.|+++|++++ +++++.++++.|++.++|+.+++++|+....+.+... ....+          
T Consensus       123 ~~~----~~~~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~-e~~~~s~~~g~~~~~  196 (444)
T COG1232         123 FIR----PKSWEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARA-ERKYGSLLRGAKKEG  196 (444)
T ss_pred             hhc----ccCCCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhh-hhhhcchhhhhhhcc
Confidence            222    2234457889999999998 9999999999999999999999999999555444332 11000          


Q ss_pred             -------CcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH
Q 018455          150 -------NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ  222 (355)
Q Consensus       150 -------~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~  222 (355)
                             ...+.+++||+++ +.+++++.+...   |+++++|++|..+..+  .+.+..+|+++.||.||+|+|++.+.
T Consensus       197 ~~~~~~~~~~~~~~~gG~~~-l~~al~~~l~~~---i~~~~~V~~i~~~~~~--~~~~~~~g~~~~~D~VI~t~p~~~l~  270 (444)
T COG1232         197 LPKQSLKKEKFGYLRGGLQS-LIEALAEKLEAK---IRTGTEVTKIDKKGAG--KTIVDVGGEKITADGVISTAPLPELA  270 (444)
T ss_pred             CcccccccccccccCccHHH-HHHHHHHHhhhc---eeecceeeEEEEcCCc--cEEEEcCCceEEcceEEEcCCHHHHH
Confidence                   1135678999999 779999888654   9999999999998542  44445578899999999999999999


Q ss_pred             HhhhcccccCcHHHHhhccCCcccEEEEEEEEccC--CCCCCCCcceeccCCC-ccceeeEcccccccccCCCceEEEEE
Q 018455          223 ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK--VTVPNVSNACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQAD  299 (355)
Q Consensus       223 ~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~  299 (355)
                      +++++...  .   ....++.+.+++++.++++.+  ...+.....++..+.+ +..++|+ |+..|...+.+.+++.+.
T Consensus       271 ~ll~~~~~--~---~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~-S~~~p~~~p~g~~ll~~~  344 (444)
T COG1232         271 RLLGDEAV--S---KAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFH-SNKWPHEAPEGKTLLRVE  344 (444)
T ss_pred             HHcCCcch--h---hhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEe-cccCCCCCCCCcEEEEEE
Confidence            99987321  1   234567777888899999886  1111212222223333 4454554 555565442244566555


Q ss_pred             ee-CCC-CCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCCC
Q 018455          300 FY-HAN-ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSL  354 (355)
Q Consensus       300 ~~-~~~-~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~  354 (355)
                      ++ +.+ ....+++||+++.++++|.++++....  ++.++++||++++|+|.+|+.
T Consensus       345 ~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~--~~~~~v~r~~~~~PqY~vG~~  399 (444)
T COG1232         345 FGGPGDESVSTMSDEELVAAVLDDLKKLGGINGD--PVFVEVTRWKYAMPQYEVGHL  399 (444)
T ss_pred             eecCCCcchhccCHHHHHHHHHHHHHHHcCcCcc--hhheeeeeccccCCccchhHH
Confidence            55 333 334678999999999999999986543  348999999999999999964

>PRK07233 hypothetical protein; Provisional

Probab=99.96  E-value=2.1e-26  Score=217.49  Aligned_cols=327  Identities=20%  Similarity=0.280  Sum_probs=223.0

Q ss_pred             CcccccCCchHHHHHHHhCCCCCCCccc--ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455            1 MQGFWYPFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA   78 (355)
Q Consensus         1 ~H~~~~~y~~~~~l~~elGl~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~   78 (355)
                      .|.+++.++++.+|+++||++....+..  ..++ .+|+.+         +++.|..   +++++.+++.++++......
T Consensus        52 ~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~  118 (434)
T PRK07233         52 YHHIFKSDEALLELLDELGLEDKLRWRETKTGYY-VDGKLY---------PLGTPLE---LLRFPHLSLIDKFRLGLLTL  118 (434)
T ss_pred             hhhhccccHHHHHHHHHcCCCCceeeccCceEEE-ECCeEe---------cCCCHHH---HHcCCCCCHHHHHHhHHHHH
Confidence            4888999999999999999985443331  2222 334321         1222222   34556677888887543222


Q ss_pred             HHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcC--CCcceEEe
Q 018455           79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWC  156 (355)
Q Consensus        79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~--~~~~~~~~  156 (355)
                      ....    .....++|++|+.+|++++ .+++..+.+++|++..+++.+++++|+.+++..+........  ......++
T Consensus       119 ~~~~----~~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
T PRK07233        119 LARR----IKDWRALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYL  193 (434)
T ss_pred             hhhh----cccccccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEecc
Confidence            2111    1123357889999999997 678888999999999999999999999988776654311111  12246789


Q ss_pred             cCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhcccccCcHHH
Q 018455          157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEF  236 (355)
Q Consensus       157 ~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~  236 (355)
                      +||++. ++++|++.+++.|++|++|++|++|+.+++  +++.+..++++++||+||+|+|++.+.++++..+   ....
T Consensus       194 ~gG~~~-l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~--~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~---~~~~  267 (434)
T PRK07233        194 EGGFAT-LIDALAEAIEARGGEIRLGTPVTSVVIDGG--GVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP---ADVL  267 (434)
T ss_pred             CCCHHH-HHHHHHHHHHhcCceEEeCCCeeEEEEcCC--ceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc---HHHH
Confidence            999988 889999999999999999999999998774  3655666788999999999999999998885422   1222


Q ss_pred             HhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEE-EEeeC-CCCCCCCCHHHH
Q 018455          237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQ-ADFYH-ANELMPLKDDQV  314 (355)
Q Consensus       237 ~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~~~~-~~~~~~~~~ee~  314 (355)
                      ..++++.+.++.++++++++++.. ..+-.....+.++.. ++..+...+...+++++.+. ..+.. ...+..++++++
T Consensus       268 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  345 (434)
T PRK07233        268 ARLRRIDYQGVVCMVLKLRRPLTD-YYWLNINDPGAPFGG-VIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEEL  345 (434)
T ss_pred             hhhcccCccceEEEEEEecCCCCC-CceeeecCCCCCcce-EEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHH
Confidence            356677788888999999988652 111000011123333 23333333322212334332 22332 233456789999


Q ss_pred             HHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          315 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       315 ~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      ++.++++|++++|++...++++..|.+|+++.|.+.||.
T Consensus       346 ~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~  384 (434)
T PRK07233        346 LDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGY  384 (434)
T ss_pred             HHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCch
Confidence            999999999999987656788999999999999999883

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.95  E-value=3.1e-25  Score=210.91  Aligned_cols=324  Identities=13%  Similarity=0.137  Sum_probs=214.5

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcc--c-ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWM--K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA   78 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~   78 (355)
                      |.+..+++++++|+++||+++...+.  + ..+| .+|+.+..+ ...  .+..|.+...+++.+.+++.+|++.+.   
T Consensus        61 ~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~-~~~~~~~~p-~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~---  133 (463)
T PRK12416         61 DSIVARNEHVMPLVKDLNLEEEMVYNETGISYIY-SDNTLHPIP-SDT--IFGIPMSVESLFSSTLVSTKGKIVALK---  133 (463)
T ss_pred             HHHhcCCHHHHHHHHHcCCccceecCCCCceEEE-ECCeEEECC-CCC--eecCCCChHHhhcCCcCCHHHHHHhhh---
Confidence            67778899999999999998654332  1 2223 233321100 000  011233333356677788888776443   


Q ss_pred             HHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH----------Hh--
Q 018455           79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LA--  146 (355)
Q Consensus        79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~----------~~--  146 (355)
                      .+...   .  ....+++|+.+|++++ +++++.+.+++|++.++|+.+++++|+...+..+..+.          ..  
T Consensus       134 ~~~~~---~--~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~  207 (463)
T PRK12416        134 DFITK---N--KEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENK  207 (463)
T ss_pred             hhccC---C--CCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhh
Confidence            22211   1  1125789999999986 88999999999999999999999999876554432210          00  


Q ss_pred             ----cCCCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455          147 ----HQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       147 ----~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~  221 (355)
                          ...+..+.+++||+++ ++++|++.+.+  ++|++|++|++|+.+++  ++ .|++ +|+++.||+||+|+|++.+
T Consensus       208 ~~~~~~~~~~~~~~~gG~~~-l~~~l~~~l~~--~~i~~~~~V~~I~~~~~--~~-~v~~~~g~~~~ad~VI~a~p~~~~  281 (463)
T PRK12416        208 KQFQSAGNKKFVSFKGGLST-IIDRLEEVLTE--TVVKKGAVTTAVSKQGD--RY-EISFANHESIQADYVVLAAPHDIA  281 (463)
T ss_pred             hccCCCCCCceEeeCCCHHH-HHHHHHHhccc--ccEEcCCEEEEEEEcCC--EE-EEEECCCCEEEeCEEEECCCHHHH
Confidence                0112335678999999 77899888754  68999999999999874  34 5665 6778999999999999999


Q ss_pred             HHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCC-CC-CCcceeccCCCc--cceeeEcccccccccCCCceEEE
Q 018455          222 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTV-PN-VSNACSGFGDSL--AWTFFDLNKIYDEHKDDSATVIQ  297 (355)
Q Consensus       222 ~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~  297 (355)
                      .+|++++.++     ..+.++.+.++.+++++|+++.+. +. ..+.+...+...  ..+.+. ++.++... +++.++.
T Consensus       282 ~~ll~~~~l~-----~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~-s~~~~~~~-~~~~~l~  354 (463)
T PRK12416        282 ETLLQSNELN-----EQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWT-SRKWKHTS-GKQKLLV  354 (463)
T ss_pred             HhhcCCcchh-----HHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEee-cCCCCCcC-CCCeEEE
Confidence            9998765432     245677778999999999976441 11 112221212221  112222 23333322 3444444


Q ss_pred             EEee-----CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          298 ADFY-----HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       298 ~~~~-----~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      ..|+     .++++.+++++|+.+.++++|+++|+..  ..++.+.+++|.+++|.+.+|+
T Consensus       355 ~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~--~~p~~~~v~~W~~a~P~y~~~~  413 (463)
T PRK12416        355 RMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIK--GEPEVVEVTNWKDLMPKYHLEH  413 (463)
T ss_pred             EEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEccccCCCcCcCH
Confidence            4443     2234667899999999999999999743  3578899999999999999885

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.95  E-value=7.9e-25  Score=208.28  Aligned_cols=318  Identities=14%  Similarity=0.152  Sum_probs=213.2

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcc--c-ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWM--K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA   78 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~   78 (355)
                      |.+...|+++++|+++||+++...+.  . ..++..+|+.      .     +.|.+...+++...+++.++++...   
T Consensus        60 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~------~-----~~p~~~~~~~~~~~~~~~~~~~~~~---  125 (462)
T TIGR00562        60 DSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKL------M-----PVPTKIAPFVKTGLFSLGGKLRAGM---  125 (462)
T ss_pred             cccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCce------e-----cCCCChHHHhcCCCCCchhhHHhhh---
Confidence            78899999999999999998654331  1 2222222432      1     1233333344555667777776431   


Q ss_pred             HHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHH----------HHhcC
Q 018455           79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI----------ILAHQ  148 (355)
Q Consensus        79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~----------~~~~~  148 (355)
                      ....   ..   ....++|+.+|++++ +++++.+.+++|++.++|+.+++++|+.+++..+...          +....
T Consensus       126 ~~~~---~~---~~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~  198 (462)
T TIGR00562       126 DFIR---PA---SPGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTR  198 (462)
T ss_pred             hhcc---CC---CCCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhc
Confidence            1111   01   023459999999987 8999999999999999999999999999876544211          00000


Q ss_pred             --------------CCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEE
Q 018455          149 --------------KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVV  213 (355)
Q Consensus       149 --------------~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV  213 (355)
                                    .+.....++||+++ +++++++.+.  .++|++|++|++|..++++  + .|++ +|+++.||+||
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~--~-~v~~~~g~~~~ad~VI  272 (462)
T TIGR00562       199 NLPQGSGLQLTAKKQGQDFQTLATGLET-LPEEIEKRLK--LTKVYKGTKVTKLSHRGSN--Y-TLELDNGVTVETDSVV  272 (462)
T ss_pred             ccCccccccccccccCCceEecchhHHH-HHHHHHHHhc--cCeEEcCCeEEEEEecCCc--E-EEEECCCcEEEcCEEE
Confidence                          01114557899988 7788887774  2789999999999987753  4 5666 56789999999


Q ss_pred             EccChhhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCc--ceeccC---CCccceeeEcccccccc
Q 018455          214 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN--ACSGFG---DSLAWTFFDLNKIYDEH  288 (355)
Q Consensus       214 ~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~  288 (355)
                      +|+|++.+..|+++.+   ....+.+.++.+.++.++.++|+++.+.....+  .+...+   ...++ +++ +...|..
T Consensus       273 ~t~P~~~~~~ll~~~~---~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-i~~-s~~~p~~  347 (462)
T TIGR00562       273 VTAPHKAAAGLLSELS---NSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGC-IFT-SKLFPNR  347 (462)
T ss_pred             ECCCHHHHHHHhcccC---HHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEE-EEE-ccccCCc
Confidence            9999999999986532   233346778889999999999987754211112  111111   12233 455 3333443


Q ss_pred             cCCCceEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          289 KDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       289 ~~~~g~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      .+++.+++.+.+.  .+.++.+++++++++.++++|.++++. . .++.+..+++|++|.|.+.+|+
T Consensus       348 ~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi-~-~~p~~~~v~rw~~a~P~~~~g~  412 (462)
T TIGR00562       348 APPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNI-N-NEPEMLCVTRWHRAIPQYHVGH  412 (462)
T ss_pred             CCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCC-C-CCCcEEEEeEccccCCCCCCCh
Confidence            3223344433232  234566789999999999999999973 3 2377889999999999999996

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK07208 hypothetical protein; Provisional

Probab=99.93  E-value=2e-23  Score=199.47  Aligned_cols=322  Identities=15%  Similarity=0.105  Sum_probs=205.6

Q ss_pred             CcccccCCchHHHHHHHhCCCCCCCcc--cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455            1 MQGFWYPFRNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA   78 (355)
Q Consensus         1 ~H~~~~~y~~~~~l~~elGl~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~   78 (355)
                      .|.++..++++++|++|||........  ...++ .+|+.      .   .+  |++....+  ..+++.++++...   
T Consensus        57 ~h~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~g~~------~---~~--p~~~~~~l--~~~~~~~~~~~~~---  119 (479)
T PRK07208         57 GHRFFSKSPEVMDLWNEILPDDDFLLRPRLSRIY-YRGKF------F---DY--PLKAFDAL--KNLGLWRTAKCGA---  119 (479)
T ss_pred             CceeccCCHHHHHHHHHhcCCCccccccccceEE-ECCEE------e---cC--CcchhHHH--HhCCHhHHHHHHH---
Confidence            388999999999999999974322211  12222 24431      1   12  22222222  2344445444221   


Q ss_pred             HHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHH---------HHHHHhc--
Q 018455           79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGIL---------YFIILAH--  147 (355)
Q Consensus        79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~---------~~~~~~~--  147 (355)
                      .....    ......|++|+.+|++++ +++++.+.+++|++.++|+.+++++|+.+++..+         +..+...  
T Consensus       120 ~~~~~----~~~~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (479)
T PRK07208        120 SYLKA----RLRPRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLG  194 (479)
T ss_pred             HHHHH----hcCCCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhccc
Confidence            11110    000113679999999986 8999999999999999999999999998755332         1111110  


Q ss_pred             -------C-C--CcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEE
Q 018455          148 -------Q-K--NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAV  212 (355)
Q Consensus       148 -------~-~--~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~V  212 (355)
                             . .  ...+.+++||+++ ++++|++.+++.|++|++|++|++|..+++ +.++.++.   +|+  ++.||+|
T Consensus       195 ~~~~~~~~~~~~~~~~~~p~gG~~~-l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~ad~V  272 (479)
T PRK07208        195 LKRRNKEVETSLIEEFRYPKLGPGQ-LWETAAEKLEALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTADQV  272 (479)
T ss_pred             ccccCCCccccceeEEeCCCCCcch-HHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEcCEE
Confidence                   0 0  1245678999999 789999999999999999999999999875 33434443   242  6899999


Q ss_pred             EEccChhhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCC--CccceeeEcccccccccC
Q 018455          213 VLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD--SLAWTFFDLNKIYDEHKD  290 (355)
Q Consensus       213 V~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  290 (355)
                      |+|+|++.+.+++.++ ++ ......+.++.+.++++++++++++...+.  ..++-.+.  .++. +...+...+... 
T Consensus       273 I~a~p~~~l~~~l~~~-~~-~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~--~~~~~~~~~~~~~r-~~~~~~~~~~~~-  346 (479)
T PRK07208        273 ISSMPLRELVAALDPP-PP-PEVRAAAAGLRYRDFITVGLLVKELNLFPD--NWIYIHDPDVKVGR-LQNFNNWSPYLV-  346 (479)
T ss_pred             EECCCHHHHHHhcCCC-CC-HHHHHHHhCCCcceeEEEEEEecCCCCCCC--ceEEecCCCCccce-ecccccCCcccC-
Confidence            9999999988887632 22 222234567888888999999998754221  11111111  1111 111112112222 


Q ss_pred             CCc--eEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          291 DSA--TVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       291 ~~g--~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      |.|  ..+.+.++  ..++.+.++++++++.++++|+++.+ +....++.++++++++++|.+.+|+
T Consensus       347 p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~  412 (479)
T PRK07208        347 PDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTY  412 (479)
T ss_pred             CCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchH
Confidence            233  23322232  33455688999999999999999743 4356789999999999999999875

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.92  E-value=6.4e-23  Score=194.68  Aligned_cols=324  Identities=16%  Similarity=0.166  Sum_probs=207.7

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcc--c-ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWM--K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA   78 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~   78 (355)
                      |.+.+.++++++|+++||++......  + ..++ .+|+.+.   +..-.....|.....++..+.++..++++...   
T Consensus        56 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~-~~g~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  128 (451)
T PRK11883         56 ESFLARKPSAPALVKELGLEDELVANTTGQSYIY-VNGKLHP---IPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAA---  128 (451)
T ss_pred             HHhcCCcHHHHHHHHHcCCccceecCCCCcceEE-ECCeEEE---CCCCCeeccCCCchhhhcCCCCCHHHHHHhhC---
Confidence            77888999999999999998543221  2 2233 3454321   11000011122121223345566666665321   


Q ss_pred             HHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH----------h--
Q 018455           79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL----------A--  146 (355)
Q Consensus        79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~----------~--  146 (355)
                      ...     ...+...+++|+.+|+++. ++++.++.++.|++.++|+.+++++|+..++..+.....          .  
T Consensus       129 ~~~-----~~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (451)
T PRK11883        129 DLR-----PPRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKAL  202 (451)
T ss_pred             ccc-----CCCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhc
Confidence            110     1112235789999999986 899999999999999999999999999876654432110          0  


Q ss_pred             --c--CCCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455          147 --H--QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       147 --~--~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~  221 (355)
                        .  ..+....+++||+++ +.+.+++.+...  +|++|++|++|+.++++  + .|++ +|+++.||+||+|+|+..+
T Consensus       203 ~~~~~~~~~~~~~~~~G~~~-l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~--~-~v~~~~g~~~~~d~vI~a~p~~~~  276 (451)
T PRK11883        203 PKEKKKTKGVFGTLKGGLQS-LIEALEEKLPAG--TIHKGTPVTKIDKSGDG--Y-EIVLSNGGEIEADAVIVAVPHPVL  276 (451)
T ss_pred             cccCCCCCCceEeeccHHHH-HHHHHHHhCcCC--eEEeCCEEEEEEEcCCe--E-EEEECCCCEEEcCEEEECCCHHHH
Confidence              0  012234568999998 777787766432  89999999999988742  4 4655 7788999999999999999


Q ss_pred             HHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCC-CCCCCcceeccCC--CccceeeEcccccccccCCCc-eEEE
Q 018455          222 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT-VPNVSNACSGFGD--SLAWTFFDLNKIYDEHKDDSA-TVIQ  297 (355)
Q Consensus       222 ~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g-~~l~  297 (355)
                      .+++..+.     ..+.++++.+.++.+++++|++++. .+...+.++..+.  ++..+.++ +...+... +.+ .++.
T Consensus       277 ~~l~~~~~-----~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~-p~g~~~~~  349 (451)
T PRK11883        277 PSLFVAPP-----AFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWT-SKKWPHTT-PEGKVLLR  349 (451)
T ss_pred             HHhccChh-----HHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeE-cCcCCCCC-CCCcEEEE
Confidence            99866432     1235677888899999999998852 1222232333222  22233343 33323322 333 3433


Q ss_pred             EEee-CC-CCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          298 ADFY-HA-NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       298 ~~~~-~~-~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      ..+. .. .....++++++++.++++|+++++..  .++.+..+++|.++.|.+.||+
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~~~rw~~a~p~~~~~~  405 (451)
T PRK11883        350 LYVGRPGDEAVVDATDEELVAFVLADLSKVMGIT--GDPEFTIVQRWKEAMPQYGVGH  405 (451)
T ss_pred             EecCCCCCchhccCCHHHHHHHHHHHHHHHhCCC--CCceEEEEeecCccCCCCCccH
Confidence            3222 22 23456789999999999999999642  3456889999999999999985

>PLN02576 protoporphyrinogen oxidase

Probab=99.92  E-value=6.7e-23  Score=196.64  Aligned_cols=321  Identities=13%  Similarity=0.152  Sum_probs=210.2

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcc--c--ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWM--K--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLM   77 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~--~--~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~   77 (355)
                      |.+...++.+..|+++ |+++...+.  .  ..++ .+|+.      .   ++  |.+...++..+.+++.+|+++....
T Consensus        67 ~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~~~-~~g~~------~---~~--p~~~~~~~~~~~~~~~~~~~~~~~~  133 (496)
T PLN02576         67 NSFQPSDPELTSAVDS-GLRDDLVFPDPQAPRYVV-WNGKL------R---PL--PSNPIDLPTFDLLSAPGKIRAGLGA  133 (496)
T ss_pred             chhccCcHHHHHHHHc-CChhheecCCCCceEEEE-ECCEE------E---Ec--CCChHHhcCcCcCChhHHHHHhHHH
Confidence            7888999999999988 998544332  1  1222 34542      1   12  2222234456678888888754322


Q ss_pred             HHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHH-----------H--
Q 018455           78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-----------I--  144 (355)
Q Consensus        78 ~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~-----------~--  144 (355)
                      ..+..   ..   ...+++|+.+|++++ ++++.++.+++|++.++|+.+++++|+..++..+...           +  
T Consensus       134 ~~~~~---~~---~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~  206 (496)
T PLN02576        134 FGWKR---PP---PPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKA  206 (496)
T ss_pred             hhccC---CC---CCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHh
Confidence            11111   01   125789999999987 8999999999999999999999999999876654321           0  


Q ss_pred             -Hhc---------------CCCcceEEecCCcchHHHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe---CC
Q 018455          145 -LAH---------------QKNFDLVWCRGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GK  204 (355)
Q Consensus       145 -~~~---------------~~~~~~~~~~gg~~~~l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~---~g  204 (355)
                       ...               ..+.....++||+++ |+++|++.+   + ++|++|++|++|+.+++ +. +.|++   +|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-L~~~la~~l---~~~~i~l~~~V~~I~~~~~-~~-~~v~~~~~~g  280 (496)
T PLN02576        207 IQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQT-LPDALAKRL---GKDKVKLNWKVLSLSKNDD-GG-YSLTYDTPEG  280 (496)
T ss_pred             hhhhcccccccccccccccccCCeeEeccchHHH-HHHHHHHhh---CcCcEEcCCEEEEEEECCC-Cc-EEEEEecCCC
Confidence             000               011224567899998 778887665   4 68999999999998875 22 23443   34


Q ss_pred             -eEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCC-----CC-c--ceeccCC---
Q 018455          205 -ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-----VS-N--ACSGFGD---  272 (355)
Q Consensus       205 -~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-----~~-~--~~~~~~~---  272 (355)
                       +++.||+||+|+|+..+..|+++..   ......+.++.+.++.+++++|+++.+...     +. .  .+.....   
T Consensus       281 ~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~  357 (496)
T PLN02576        281 KVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVK  357 (496)
T ss_pred             ceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCc
Confidence             4799999999999999999987532   122335678888899999999998765310     11 1  0100000   


Q ss_pred             CccceeeEcccccccccCCCceEEEEEee---CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCcccc
Q 018455          273 SLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF  349 (355)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~  349 (355)
                      ..++ +++ +...|+.. +.+..+...|.   .++.+..++++++++.++++|+++++......+....+++|++++|.+
T Consensus       358 ~lg~-~~~-s~~~p~~~-~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~  434 (496)
T PLN02576        358 TLGT-IYS-SSLFPDRA-PEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQY  434 (496)
T ss_pred             eEEE-Eee-cCcCCCCC-CCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCC
Confidence            1122 343 34444433 23333323344   235677889999999999999999974221234556788999999999


Q ss_pred             CCCCC
Q 018455          350 FPGSL  354 (355)
Q Consensus       350 ~pg~~  354 (355)
                      .+|++
T Consensus       435 ~~g~~  439 (496)
T PLN02576        435 LLGHL  439 (496)
T ss_pred             CcCHH
Confidence            99863

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=5.7e-22  Score=181.13  Aligned_cols=344  Identities=21%  Similarity=0.272  Sum_probs=247.3

Q ss_pred             CcccccCCchHHHHHHHhCCCCCCCccc-ceeec--C--CCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchh
Q 018455            1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYS--E--EGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSL   74 (355)
Q Consensus         1 ~H~~~~~y~~~~~l~~elGl~~~~~~~~-~~~~~--~--~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~   74 (355)
                      +|+||++|+|+++|++|++.+..+++.+ ...+.  .  .|-.   .++.. +.-|.|+.... +++.+.+++++|++++
T Consensus        54 lh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~-~~~p~p~~~~~~~l~~~~~~~~~~~~~~  129 (485)
T COG3349          54 LHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAI---GRFAR-PDAPQPTNGLKAFLRLPQLPRREKIRFV  129 (485)
T ss_pred             eEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcc---ccccc-CCCCCcchhhhhhhhccccCHHHHhHHh
Confidence            5999999999999999999997776663 44441  1  1221   12322 23556776666 7889999999999953


Q ss_pred             -hHHHHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcce
Q 018455           75 -PLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL  153 (355)
Q Consensus        75 -~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~  153 (355)
                       ++......   ..+.++++|+.|++||+++++.++......|.|++......+++.+|++.++.++..++.....+...
T Consensus       130 ~~l~~~~~g---~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~  206 (485)
T COG3349         130 LRLGDAPIG---ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASIL  206 (485)
T ss_pred             hccccccch---hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchh
Confidence             32222110   14567889999999999999999999999999999999999999999999988887765444345556


Q ss_pred             EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCC--CeEEEEEeCCeE---EecCEEEEccChhhHHHhhhcc
Q 018455          154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVCGKET---YSAGAVVLAVGISTLQELIKNS  228 (355)
Q Consensus       154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~--~~v~~v~~~g~~---~~ad~VV~a~p~~~~~~l~~~~  228 (355)
                      .+++|+..+.+..++.+.+.+.|.++++..+|.+|..+...  .+++++.+.+..   ..++.|+.+...+.+..++++.
T Consensus       207 ~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~  286 (485)
T COG3349         207 RNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSE  286 (485)
T ss_pred             hhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCccc
Confidence            77889998888899999999999999999999999987521  347777765543   4456666676667777776665


Q ss_pred             cccCcHHHHhhccCCcccEEEEEEEEccCCCCCCC-------CcceeccCCCccceeeEcccccccccCCC-ceEEEEEe
Q 018455          229 ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV-------SNACSGFGDSLAWTFFDLNKIYDEHKDDS-ATVIQADF  300 (355)
Q Consensus       229 ~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~~  300 (355)
                      .. +...+.++..+...++.+++++++...+....       .+..++ ..+.+.++++....++.+..++ ++.+....
T Consensus       287 W~-~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s-~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~  364 (485)
T COG3349         287 WP-KWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWS-DDTLGGVVADLALTSPDYVEPGAGCYLEKVL  364 (485)
T ss_pred             cc-ccccccccccccccceeEEEEeecCccccccccchhhhhhccccc-cccCCceeeeccccchhhccccchhhhhhhh
Confidence            32 23444566666777999999999976542211       111111 1233334566555444443222 23444455


Q ss_pred             eCCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCCC
Q 018455          301 YHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSL  354 (355)
Q Consensus       301 ~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~  354 (355)
                      +++..|...+++++.....+++...+|...+.+ ....+.+.+.++....||++
T Consensus       365 ~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~  417 (485)
T COG3349         365 APGWPFLFESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSY  417 (485)
T ss_pred             cccccccccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCcc
Confidence            577788888999999999999999998766555 77889999999999999975

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.79  E-value=1.5e-17  Score=147.15  Aligned_cols=252  Identities=12%  Similarity=0.137  Sum_probs=175.3

Q ss_pred             hcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH--------------hcCCC-------
Q 018455           92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--------------AHQKN-------  150 (355)
Q Consensus        92 ~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~--------------~~~~~-------  150 (355)
                      +..++||++|++|+ +++++.+++++|||+++|++|++++|+..++.-+...-.              +....       
T Consensus       152 ~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~  230 (491)
T KOG1276|consen  152 PSADESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETAL  230 (491)
T ss_pred             CCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchh
Confidence            35689999999997 999999999999999999999999999987765543200              00000       


Q ss_pred             --------cceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC-eEEecCEEEEccCh
Q 018455          151 --------FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGI  218 (355)
Q Consensus       151 --------~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-~~~~ad~VV~a~p~  218 (355)
                              ....-.+||++. +.+++.+.|.+..+.|.++.+++.+.....|+  |.+++   ++ ..+..++++.|+|+
T Consensus       231 ~~~~~~e~~~~~sl~gGle~-lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~--~~~tl~~~~~~~~~~~~~~~~t~~~  307 (491)
T KOG1276|consen  231 SAQAKKEKWTMFSLKGGLET-LPKALRKSLGEREVSISLGLKLSGNSKSRSGN--WSLTLVDHSGTQRVVVSYDAATLPA  307 (491)
T ss_pred             hhhhcccccchhhhhhhHhH-hHHHHHHHhcccchhhhcccccccccccccCC--ceeEeEcCCCceeeeccccccccch
Confidence                    001225799988 88999999998889999999999999876532  35555   33 24456666679999


Q ss_pred             hhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccC-CCCC-CCCcceec--cC---CCccceeeEcccccccccCC
Q 018455          219 STLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK-VTVP-NVSNACSG--FG---DSLAWTFFDLNKIYDEHKDD  291 (355)
Q Consensus       219 ~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~-~~~~-~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~  291 (355)
                      ..++++++....   .....+..++|.++..|.+.|..+ ...+ ...+.+..  ..   ..++ ++|| +..+|... +
T Consensus       308 ~k~a~ll~~~~~---sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG-~ifd-S~~Fp~~~-~  381 (491)
T KOG1276|consen  308 VKLAKLLRGLQN---SLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLG-TIFD-SMLFPDRS-P  381 (491)
T ss_pred             HHhhhhccccch---hhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeE-EEee-cccCCCCC-C
Confidence            999999887532   222356788999999999999774 2211 11222222  11   1234 4788 55556544 2


Q ss_pred             CceEEEEEeeCC---CCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCCCC
Q 018455          292 SATVIQADFYHA---NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSLL  355 (355)
Q Consensus       292 ~g~~l~~~~~~~---~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~  355 (355)
                      .+.++...+...   ......|.||+++.+.++|.+++.. .+ .+....++-|+.++|+|..|+++
T Consensus       382 s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi-~~-~P~~~~v~l~~~ciPqy~vGh~~  446 (491)
T KOG1276|consen  382 SPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGI-SN-KPVSVNVHLWKNCIPQYTVGHDD  446 (491)
T ss_pred             CceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCC-CC-CcccccceehhhcccceecchHH
Confidence            223332333321   2234568999999999999999963 32 37778888999999999999763

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.74  E-value=9.6e-17  Score=138.41  Aligned_cols=224  Identities=16%  Similarity=0.059  Sum_probs=146.1

Q ss_pred             Cccccc-CCchHHHHHHHhCCCCCCCcccceee-cCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455            1 MQGFWY-PFRNIFSLVDELGIKPFTGWMKSAQY-SEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA   78 (355)
Q Consensus         1 ~H~~~~-~y~~~~~l~~elGl~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~   78 (355)
                      ||++.. .||++.+|++++|+++.....+..+- +.+|.+|+     . ...+.++....   -..+.    -++.++++
T Consensus        64 fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v~~d~gglEy~-----g-~tgl~~L~aqk---~n~l~----pRf~~mla  130 (447)
T COG2907          64 FIVYNERTYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLEYS-----G-LTGLAGLLAQK---RNLLR----PRFPCMLA  130 (447)
T ss_pred             eEEecCCCcchHHHHHHHcCCCCcccceeEEEEecCCceeec-----c-CCCccchhhcc---ccccc----hhHHHHHH
Confidence            577777 99999999999999976555554443 23344432     1 01112222111   00010    11222233


Q ss_pred             HHhccC---CChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCC----Cc
Q 018455           79 AVIDFD---NTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK----NF  151 (355)
Q Consensus        79 ~~~~~~---~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~----~~  151 (355)
                      +++++.   ..+.+.....++|+.+||+++++++.+++.++.||..++|+.+..+++...++..+..+ .+++-    +.
T Consensus       131 eiLrf~r~~~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~-~nhGll~l~~r  209 (447)
T COG2907         131 EILRFYRSDLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFT-DNHGLLYLPKR  209 (447)
T ss_pred             HHHHHhhhhccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHH-hccCceecCCC
Confidence            333322   11222334568999999999999999999999999999999999999998888777654 23221    11


Q ss_pred             ceE-EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhcccc
Q 018455          152 DLV-WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSIL  230 (355)
Q Consensus       152 ~~~-~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~l~~~~~l  230 (355)
                      ..+ ...||... .+++|.   +..+++|+++++|.+|.+-.||  |+.+..+|++.++|+||+|+.++++..|++++..
T Consensus       210 p~wrtV~ggS~~-yvq~la---a~~~~~i~t~~~V~~l~rlPdG--v~l~~~~G~s~rFD~vViAth~dqAl~mL~e~sp  283 (447)
T COG2907         210 PTWRTVAGGSRA-YVQRLA---ADIRGRIETRTPVCRLRRLPDG--VVLVNADGESRRFDAVVIATHPDQALALLDEPSP  283 (447)
T ss_pred             CceeEcccchHH-HHHHHh---ccccceeecCCceeeeeeCCCc--eEEecCCCCccccceeeeecChHHHHHhcCCCCH
Confidence            112 24577766 555555   3446789999999999999885  5334446999999999999999999999988742


Q ss_pred             cCcHHHHhhccCCcccE
Q 018455          231 CNREEFLKVLNLASIDV  247 (355)
Q Consensus       231 ~~~~~~~~~~~l~~~~~  247 (355)
                         ...+-+..+.|+..
T Consensus       284 ---~e~qll~a~~Ys~n  297 (447)
T COG2907         284 ---EERQLLGALRYSAN  297 (447)
T ss_pred             ---HHHHHHHhhhhhhc
Confidence               22234566666543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.70  E-value=4.8e-15  Score=142.15  Aligned_cols=234  Identities=16%  Similarity=0.147  Sum_probs=145.6

Q ss_pred             cccccHHHHHHHhC-CCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHH
Q 018455           93 YDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS  171 (355)
Q Consensus        93 ~d~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~  171 (355)
                      +...|+.+|+++++ +.++.++.++...+....+.+|++.++.+.+..+..+  ..  .....+++||+++ |+++|++.
T Consensus       167 ~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~G~~~~~GG~~~-l~~aL~~~  241 (492)
T TIGR02733       167 LSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA--QA--PHGLWHLHGSMQT-LSDRLVEA  241 (492)
T ss_pred             hhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc--cc--CCCceeecCcHHH-HHHHHHHH
Confidence            45689999999863 3444456677765544456678888887765444321  11  1234679999999 88999999


Q ss_pred             HHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC-----eEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCcc
Q 018455          172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASI  245 (355)
Q Consensus       172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g-----~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~  245 (355)
                      ++++|++|+++++|++|..++  +++.+|.+ ++     +++.||+||+|+|+..+.+|++++.++. ...+.+++++++
T Consensus       242 ~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~s  318 (492)
T TIGR02733       242 LKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPP-GYRKRLKKLPEP  318 (492)
T ss_pred             HHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCH-HHHHHHhcCCCC
Confidence            999999999999999999987  34555654 44     5789999999999999988887644321 223355666654


Q ss_pred             c-EEEEEEEEccCC-CCCCCCcceeccCCCccceeeEcccccccccCCCc-eEEEE-EeeCCCCCCCC-------CHHHH
Q 018455          246 D-VVSVKLWFDKKV-TVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSA-TVIQA-DFYHANELMPL-------KDDQV  314 (355)
Q Consensus       246 ~-~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~-~~~~~~~~~~~-------~~ee~  314 (355)
                      + .+++++++++.. .........+..+. .+..+...+...+..+ |+| +.+.+ ++.+...|..+       -++++
T Consensus       319 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~a-P~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~  396 (492)
T TIGR02733       319 SGAFVFYLGVKRAALPVDCPPHLQFLSDH-QGSLFVSISQEGDGRA-PQGEATLIASSFTDTNDWSSLDEEDYTAKKKQY  396 (492)
T ss_pred             CceEEEEEeecccccCCCCCcceeeccCC-CceEEEEeCCccccCC-CCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHH
Confidence            4 568899998742 11111111111121 1122222222223333 444 44322 22232233221       24568


Q ss_pred             HHHHHHHHhhhcccCCCceeeee
Q 018455          315 VAKAVSYLSKCIKDFSTATVMDH  337 (355)
Q Consensus       315 ~~~~~~~l~~~~p~~~~~~~~~~  337 (355)
                      .+.+++.+++++|++++ .++..
T Consensus       397 ~~~il~~le~~~p~l~~-~i~~~  418 (492)
T TIGR02733       397 TQTIIERLGHYFDLLEE-NWVHV  418 (492)
T ss_pred             HHHHHHHHHHHCCCccc-cEEEE
Confidence            88899999999999864 44433

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02268 probable polyamine oxidase

Probab=99.69  E-value=5.4e-15  Score=139.70  Aligned_cols=224  Identities=15%  Similarity=0.109  Sum_probs=140.8

Q ss_pred             hcccccHHHHHHHhC----------CCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcc
Q 018455           92 KYDSITARELFKQFG----------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR  161 (355)
Q Consensus        92 ~~d~~s~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~  161 (355)
                      ..+++|+.+|+++..          +++++.+.++.| +.+.++.+++++|+.....  ... ..   + ...++++|++
T Consensus       130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~--~~~-~~---g-~~~~~~~G~~  201 (435)
T PLN02268        130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ--EEL-LE---G-GHGLMVRGYD  201 (435)
T ss_pred             cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC--ccc-cC---C-CceeecCCHH
Confidence            367899999876431          345555556666 4567899999999875311  000 01   1 1245778888


Q ss_pred             hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH--hhhcccccCcHHHHh
Q 018455          162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLK  238 (355)
Q Consensus       162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~--l~~~~~l~~~~~~~~  238 (355)
                      + +++.|++     +.+|++|++|++|..++++  + .|++ +|+++.||+||+|+|+..+++  +.+.|.++. ...+.
T Consensus       202 ~-l~~~l~~-----~~~i~~~~~V~~i~~~~~~--v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~-~~~~a  271 (435)
T PLN02268        202 P-VINTLAK-----GLDIRLNHRVTKIVRRYNG--V-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPE-WKEEA  271 (435)
T ss_pred             H-HHHHHhc-----cCceeCCCeeEEEEEcCCc--E-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCH-HHHHH
Confidence            7 5555542     5689999999999998753  5 4666 677899999999999999875  334455432 11235


Q ss_pred             hccCCcccEEEEEEEEccCCCCCCCCcceeccCC--CccceeeEcccccccccCCCceEEEEEee--CCCCCCCCCHHHH
Q 018455          239 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD--SLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQV  314 (355)
Q Consensus       239 ~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~ee~  314 (355)
                      ++++++.++.++.+.|++++|. . .+ +++...  ......++  .....   ++..++.+...  .+.++..++++++
T Consensus       272 i~~~~~g~~~Kv~l~f~~~fw~-~-~~-~~g~~~~~~~~~~~~~--~~~~~---~g~~~l~~~~~g~~a~~~~~~~~~e~  343 (435)
T PLN02268        272 ISDLGVGIENKIALHFDSVFWP-N-VE-FLGVVAPTSYGCSYFL--NLHKA---TGHPVLVYMPAGRLARDIEKLSDEAA  343 (435)
T ss_pred             HHhCCccceeEEEEEeCCCCCC-C-Cc-eeeccCCCCCCceEEE--ecccC---CCCCEEEEEeccHHHHHHHhCCHHHH
Confidence            6778888999999999999883 2 12 222111  11111122  11110   12234432222  2345678899999


Q ss_pred             HHHHHHHHhhhcccCCCceeeeeeEEecC
Q 018455          315 VAKAVSYLSKCIKDFSTATVMDHKIRRFP  343 (355)
Q Consensus       315 ~~~~~~~l~~~~p~~~~~~~~~~~v~~~~  343 (355)
                      ++.++++|+++||...  .++.+.+++|.
T Consensus       344 ~~~v~~~L~~~~~~~~--~p~~~~~~~W~  370 (435)
T PLN02268        344 ANFAMSQLKKMLPDAT--EPVQYLVSRWG  370 (435)
T ss_pred             HHHHHHHHHHHcCCCC--CccEEEecccC
Confidence            9999999999998642  34445555554

>PLN02529 lysine-specific histone demethylase 1

Probab=99.63  E-value=6.6e-14  Score=137.05  Aligned_cols=231  Identities=12%  Similarity=0.116  Sum_probs=138.9

Q ss_pred             hcccccHHHHHHHhC------CCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHH
Q 018455           92 KYDSITARELFKQFG------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF  165 (355)
Q Consensus        92 ~~d~~s~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~  165 (355)
                      ..+++|+.+|+++..      .++.. +.+++..+..+....+.++|...+..+....  ....+.....+.||+++ ++
T Consensus       285 ~~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~--~~e~~G~~~~i~GG~~~-Li  360 (738)
T PLN02529        285 FANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYWDQDD--PYEMGGDHCFLAGGNWR-LI  360 (738)
T ss_pred             CccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHhhhcc--ccccCCceEEECCcHHH-HH
Confidence            367899999998643      34433 2345544433333333333333222222210  01112234557899987 66


Q ss_pred             HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH--HhhhcccccCcHHHHhhccCC
Q 018455          166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLA  243 (355)
Q Consensus       166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~--~l~~~~~l~~~~~~~~~~~l~  243 (355)
                      ++|++     +.+|++|++|++|.+++++  | .|+++++++.||+||+|+|+.+++  .+.+.|+++. ...+.+++++
T Consensus       361 ~aLA~-----~L~IrLnt~V~~I~~~~dG--V-tV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~-~K~~AI~rL~  431 (738)
T PLN02529        361 NALCE-----GVPIFYGKTVDTIKYGNDG--V-EVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPR-RKLAAIDRLG  431 (738)
T ss_pred             HHHHh-----cCCEEcCCceeEEEEcCCe--E-EEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCH-HHHHHHHcCC
Confidence            66664     4469999999999998753  5 477777889999999999999998  4556666642 2234678999


Q ss_pred             cccEEEEEEEEccCCCCCCCCcceecc----CCCc-cceeeEcccccccccCCCceEEEEEee---CCCCCCCCCHHHHH
Q 018455          244 SIDVVSVKLWFDKKVTVPNVSNACSGF----GDSL-AWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPLKDDQVV  315 (355)
Q Consensus       244 ~~~~~~v~l~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~~~ee~~  315 (355)
                      ++++.++++.|++++|... .. .++.    .... .+.++. +....    +++.++. .|.   .+..+..+++++++
T Consensus       432 yG~v~KV~L~F~~~FW~~~-~~-~fG~l~~~~~~~g~~~~~~-~~~~~----~ggpvLv-afv~G~~A~~le~lsdeeii  503 (738)
T PLN02529        432 FGLLNKVAMVFPSVFWGEE-LD-TFGCLNESSNKRGEFFLFY-GYHTV----SGGPALV-ALVAGEAAQRFENTDPSTLL  503 (738)
T ss_pred             CceeEEEEEEeCCccccCC-CC-ceEEEeccCCCCceEEEEe-cCCCC----CCCCEEE-EEECchhhHHHhcCCHHHHH
Confidence            9999999999999998421 11 2221    0011 111121 11101    1233332 333   33456678999999


Q ss_pred             HHHHHHHhhhccc--CCCceeeeeeEEecC
Q 018455          316 AKAVSYLSKCIKD--FSTATVMDHKIRRFP  343 (355)
Q Consensus       316 ~~~~~~l~~~~p~--~~~~~~~~~~v~~~~  343 (355)
                      +.++++|+++|+.  ...+.++.+.+++|.
T Consensus       504 ~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~  533 (738)
T PLN02529        504 HRVLSVLRGIYNPKGINVPDPIQTICTRWG  533 (738)
T ss_pred             HHHHHHHHHHhCccccccCCceEEEEccCC
Confidence            9999999999962  222345555556665

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.62  E-value=7.1e-15  Score=132.48  Aligned_cols=178  Identities=14%  Similarity=0.148  Sum_probs=122.4

Q ss_pred             ecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCC-eEEecCEEEEccChhhHHHhhhcccccCcH
Q 018455          156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNRE  234 (355)
Q Consensus       156 ~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g-~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~  234 (355)
                      +.|||+. +++++++.+   |.+|+++++|++|.+.++|  | .|+++. +++.+|.||||+|+.++.+|..+|.++ ..
T Consensus       204 ~~GGmd~-la~Afa~ql---~~~I~~~~~V~rI~q~~~g--V-~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~-~~  275 (450)
T COG1231         204 RLGGMDQ-LAEAFAKQL---GTRILLNEPVRRIDQDGDG--V-TVTADDVGQYVADYVLVTIPLAILGQIDFAPLLP-AE  275 (450)
T ss_pred             cCccHHH-HHHHHHHHh---hceEEecCceeeEEEcCCe--E-EEEeCCcceEEecEEEEecCHHHHhhcccCCCCC-HH
Confidence            4499988 777777555   7899999999999999875  6 577766 899999999999999999998887543 23


Q ss_pred             HHHhhccCCcccEEEEEEEEccCCCCCCCCcceec---cCCCccceeeEcccccccccCCCceEEEEEe-e-CCCCCCCC
Q 018455          235 EFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSG---FGDSLAWTFFDLNKIYDEHKDDSATVIQADF-Y-HANELMPL  309 (355)
Q Consensus       235 ~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~-~~~~~~~~  309 (355)
                      +.+.++.++|.+..++.+.|+++||+.  .+.+.|   .+..+....++ ++.   ..+..+.++.... . .+..|..+
T Consensus       276 ~~~a~~~~~y~~~~K~~v~f~rpFWee--~~~l~G~~~tD~~~~~i~~~-s~~---~~~G~gVl~g~~~~g~~A~~~~~~  349 (450)
T COG1231         276 YKQAAKGVPYGSATKIGVAFSRPFWEE--AGILGGESLTDLGLGFISYP-SAP---FADGPGVLLGSYAFGDDALVIDAL  349 (450)
T ss_pred             HHHHhcCcCcchheeeeeecCchhhhh--cccCCceEeecCCcceEecC-ccc---cCCCceEEEeeeeccccceeEecC
Confidence            334567788999999999999999952  221211   12222211122 121   1112333333212 1 45678899


Q ss_pred             CHHHHHHHHHHHHhhhcccCCCcee---eeeeEEecCCCcc
Q 018455          310 KDDQVVAKAVSYLSKCIKDFSTATV---MDHKIRRFPKSLT  347 (355)
Q Consensus       310 ~~ee~~~~~~~~l~~~~p~~~~~~~---~~~~v~~~~~a~~  347 (355)
                      +++++++.++..+.++||+.....+   ..+.|.+.|++..
T Consensus       350 ~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G  390 (450)
T COG1231         350 PEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLG  390 (450)
T ss_pred             CHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCc
Confidence            9999999999999999995322222   4466777777654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.59  E-value=8.3e-13  Score=130.04  Aligned_cols=175  Identities=14%  Similarity=0.151  Sum_probs=116.0

Q ss_pred             eEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH--hhhcccc
Q 018455          153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSIL  230 (355)
Q Consensus       153 ~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~--l~~~~~l  230 (355)
                      ....+||+++ ++++|++.+     .|++|++|++|...+++  | .|+++|+++.||+||+|+|+.++++  +.+.|++
T Consensus       429 ~~~v~GG~~~-Li~aLa~~L-----~I~ln~~V~~I~~~~dg--V-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~L  499 (808)
T PLN02328        429 HCFIPGGNDT-FVRELAKDL-----PIFYERTVESIRYGVDG--V-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPEL  499 (808)
T ss_pred             EEEECCcHHH-HHHHHHhhC-----CcccCCeeEEEEEcCCe--E-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCC
Confidence            4557899998 777787655     49999999999998753  5 4556888999999999999999884  5556655


Q ss_pred             cCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceecc---CCC-cc-ce-eeEcccccccccCCCceEEEEEee--C
Q 018455          231 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF---GDS-LA-WT-FFDLNKIYDEHKDDSATVIQADFY--H  302 (355)
Q Consensus       231 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~---~~~-~~-~~-~~~~~~~~~~~~~~~g~~l~~~~~--~  302 (355)
                      +. ...+.++++.++++.++.+.|++++|... .. .++.   +.. .+ +. +++.+..      .++.++.+.+.  .
T Consensus       500 P~-~K~~AI~~l~yG~~~KV~L~F~~~FW~~~-~d-~fG~l~~d~s~rG~~~lf~s~s~~------~G~~vLvafv~G~~  570 (808)
T PLN02328        500 PQ-RKKDAIQRLGYGLLNKVALLFPYNFWGGE-ID-TFGHLTEDPSMRGEFFLFYSYSSV------SGGPLLIALVAGDA  570 (808)
T ss_pred             CH-HHHHHHHcCCCcceEEEEEEeCCccccCC-CC-ceEEEeecCCCCceEEEEecCCCC------CCCcEEEEEecChh
Confidence            42 22236788999999999999999998421 11 1221   111 11 11 1221111      23344433222  2


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhccc--CCCceeeeeeEEecCCC
Q 018455          303 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKS  345 (355)
Q Consensus       303 ~~~~~~~~~ee~~~~~~~~l~~~~p~--~~~~~~~~~~v~~~~~a  345 (355)
                      +..+..++++++++.++++|+++|+.  .....++.+.+++|...
T Consensus       571 A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~D  615 (808)
T PLN02328        571 AVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKD  615 (808)
T ss_pred             hHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCC
Confidence            34566789999999999999999963  11234566777777643

>PLN02676 polyamine oxidase

Probab=99.56  E-value=1.4e-13  Score=130.89  Aligned_cols=242  Identities=12%  Similarity=0.064  Sum_probs=142.5

Q ss_pred             hcccccH--HHHHHHhC-CCHHHHHHHHHHHHH-hhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEe--cCCcchHHH
Q 018455           92 KYDSITA--RELFKQFG-CSERLYRNVIGPLVQ-VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC--RGTLREKIF  165 (355)
Q Consensus        92 ~~d~~s~--~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~--~gg~~~~l~  165 (355)
                      ..|++|+  .+++.+.. .+..  ......+.. ..++.+++++|+..++.. ..+  ...++ .....  +||+++ ++
T Consensus       155 ~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~~-~~~--~~~g~-~~~~~~~~~G~~~-l~  227 (487)
T PLN02676        155 KAVDISILTAQRLFGQVPKTPL--EMVIDYYNYDYEFAEPPRVTSLKNTEPN-PTF--VDFGE-DEYFVADPRGYES-LV  227 (487)
T ss_pred             CCCCccHHHHHHHHhhCCCCHH--HHHHHHHhccceeccCccccchhhcCcc-ccc--ccCCC-ceEEeecCCCHHH-HH
Confidence            3567777  55555432 1111  111222221 226888899998765421 111  11111 22233  689988 77


Q ss_pred             HHHHHHHHHc------CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH--hhhcccccCcHHH
Q 018455          166 EPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSILCNREEF  236 (355)
Q Consensus       166 ~~l~~~l~~~------G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~--l~~~~~l~~~~~~  236 (355)
                      +.|++.+.+.      +.+|++|++|++|..++++  | .|++ +|++++||+||+|+|+.+++.  +.+.|+++. ...
T Consensus       228 ~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g--V-~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~-~k~  303 (487)
T PLN02676        228 YYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNG--V-TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPD-WKI  303 (487)
T ss_pred             HHHHhhcccccccccCCCceecCCEeeEEEEcCCc--E-EEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCH-HHH
Confidence            8888766432      2579999999999998764  6 4766 677999999999999999986  777777753 212


Q ss_pred             HhhccCCcccEEEEEEEEccCCCCCCCCcceeccC-CCccc-eeeEcccccccccCCCceEEEEEee--CCCCCCCCCHH
Q 018455          237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG-DSLAW-TFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDD  312 (355)
Q Consensus       237 ~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~e  312 (355)
                      +.++++.++.+.++.+.|++++|........+... ...+. .++..  .....  ++..++.+.+.  .+..+..++++
T Consensus       304 ~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~l~~~~~g~~a~~~~~~s~e  379 (487)
T PLN02676        304 EAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQH--LENEY--PGSNVLFVTVTDEESRRIEQQPDS  379 (487)
T ss_pred             HHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhh--cccCC--CCCCEEEEEechHHHHHHHhCCHH
Confidence            35677888899999999999999421111111111 00000 00100  00011  22234333232  23456678999


Q ss_pred             HHHHHHHHHHhhhccc-CC-CceeeeeeEEecCCCccc
Q 018455          313 QVVAKAVSYLSKCIKD-FS-TATVMDHKIRRFPKSLTH  348 (355)
Q Consensus       313 e~~~~~~~~l~~~~p~-~~-~~~~~~~~v~~~~~a~~~  348 (355)
                      ++++.+++.|+++|+. +. ......+.|...|++...
T Consensus       380 ~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gs  417 (487)
T PLN02676        380 ETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGS  417 (487)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcc
Confidence            9999999999999963 22 133445566666776543

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.55  E-value=1.1e-12  Score=126.35  Aligned_cols=230  Identities=10%  Similarity=0.001  Sum_probs=140.3

Q ss_pred             cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHHH
Q 018455           93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM  172 (355)
Q Consensus        93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l  172 (355)
                      .+..|+.+|+++...++ .++.++.. ....++.+|++.++.+.+..+..+    .  ....+++||++. ++++|.+.+
T Consensus       159 ~~~~s~~~~~~~~~~~~-~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~~~~----~--~g~~~~~gG~~~-l~~al~~~~  229 (502)
T TIGR02734       159 LAWRSLYSKVARFFSDE-RLRQAFSF-HALFLGGNPFRTPSIYALISALER----E--WGVWFPRGGTGA-LVAAMAKLA  229 (502)
T ss_pred             cCcCCHHHHHHhhcCCH-HHHHHhcc-cceeeccCcccchHHHHHHHHHHh----h--ceEEEcCCCHHH-HHHHHHHHH
Confidence            45789999999874444 45666653 344667888888876554322211    1  134678999987 889999999


Q ss_pred             HHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhhhcccccCcHHHHhhccCC-cccEEE
Q 018455          173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIKNSILCNREEFLKVLNLA-SIDVVS  249 (355)
Q Consensus       173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~~~~~l~~~~~~~~~~~l~-~~~~~~  249 (355)
                      +++|++|+++++|++|..++  +++++|.+ +|++++||.||+|+++..+ ..|++....+. ...+.+++++ +.+.++
T Consensus       230 ~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~s~s~~~  306 (502)
T TIGR02734       230 EDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRR-YPAARLSRKRPSPSLFV  306 (502)
T ss_pred             HHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCcccccc-ccccccccCCcCCeeeE
Confidence            99999999999999999876  45778877 5678999999999998665 45665443221 1112344555 446788


Q ss_pred             EEEEEc---cCCCCCCCCcceeccC-----------C--C-ccceeeEc-ccccccccCCCc-eEEEEE-eeCCC-----
Q 018455          250 VKLWFD---KKVTVPNVSNACSGFG-----------D--S-LAWTFFDL-NKIYDEHKDDSA-TVIQAD-FYHAN-----  304 (355)
Q Consensus       250 v~l~~~---~~~~~~~~~~~~~~~~-----------~--~-~~~~~~~~-~~~~~~~~~~~g-~~l~~~-~~~~~-----  304 (355)
                      ++++++   +++.....++.++..+           +  + ....+... +...|..+ |+| +.+.+. ..+..     
T Consensus       307 ~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~a-P~G~~~~~~~~~~~~~~~~~~  385 (502)
T TIGR02734       307 LYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLA-PPGCENLYVLAPVPHLGTADV  385 (502)
T ss_pred             EEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCC-CCCCccEEEEEeCCCCCCCCC
Confidence            899998   3433111223232111           0  0 01111211 22223333 344 333222 22221     


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-cccCCCceeeee
Q 018455          305 ELMPLKDDQVVAKAVSYLSKC-IKDFSTATVMDH  337 (355)
Q Consensus       305 ~~~~~~~ee~~~~~~~~l~~~-~p~~~~~~~~~~  337 (355)
                      +|. ...+++.+.+++.+++. +|++++ .++..
T Consensus       386 ~~~-~~k~~~~~~il~~l~~~~~p~l~~-~i~~~  417 (502)
T TIGR02734       386 DWS-VEGPRYRDRILAYLEERAIPGLRD-RIVVE  417 (502)
T ss_pred             CcH-HHHHHHHHHHHHHHHHhcCCChhH-heEEE
Confidence            132 23567889999999998 998864 34433

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02568 polyamine oxidase

Probab=99.55  E-value=3.2e-13  Score=129.42  Aligned_cols=218  Identities=14%  Similarity=0.098  Sum_probs=142.1

Q ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcC-------------C-----CcceEEe
Q 018455           95 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ-------------K-----NFDLVWC  156 (355)
Q Consensus        95 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~-------------~-----~~~~~~~  156 (355)
                      +.|+.+|++++ +++ .++.+.+|+..++++.++++.+...++..+..+.....             .     ......+
T Consensus       160 ~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i  237 (539)
T PLN02568        160 GGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI  237 (539)
T ss_pred             CCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence            45999999986 544 56677788888899888888877666554443210000             0     0123446


Q ss_pred             cCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH------hhhccc
Q 018455          157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE------LIKNSI  229 (355)
Q Consensus       157 ~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~------l~~~~~  229 (355)
                      +||+++ |.+.|++.+.  +.+|++|++|++|..++++  + .|++ +|+++.||+||+|+|+..+++      +.+.|+
T Consensus       238 ~gG~~~-Li~~La~~L~--~~~I~ln~~V~~I~~~~~~--v-~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~  311 (539)
T PLN02568        238 AKGYLS-VIEALASVLP--PGTIQLGRKVTRIEWQDEP--V-KLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP  311 (539)
T ss_pred             CCcHHH-HHHHHHhhCC--CCEEEeCCeEEEEEEeCCe--E-EEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC
Confidence            799988 6788877663  4689999999999998753  5 4666 677899999999999999985      456666


Q ss_pred             ccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcc-----------------cccccccCCC
Q 018455          230 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLN-----------------KIYDEHKDDS  292 (355)
Q Consensus       230 l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~  292 (355)
                      ++.. ..+.++.++++.+.++++.|++++|.. ... +... ..++. +++.+                 ...+. . .+
T Consensus       312 LP~~-k~~Ai~~l~~g~~~Ki~l~f~~~fW~~-~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~  384 (539)
T PLN02568        312 LPDF-KTDAISRLGFGVVNKLFVELSPRPDGS-PED-VAKF-PFLQM-AFHRSDSEARHDKIPWWMRRTASICPI-H-KN  384 (539)
T ss_pred             CCHH-HHHHHHhcCCceeeEEEEEecCCCCCc-ccc-cccc-cceee-eecccchhhhcccccchhhcccccccc-C-CC
Confidence            6432 234678888889999999999998731 111 0000 00100 11100                 00111 0 12


Q ss_pred             ceEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcc
Q 018455          293 ATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIK  327 (355)
Q Consensus       293 g~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p  327 (355)
                      ..++...+.  .+..+..++++++++.+++.|+++|+
T Consensus       385 ~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g  421 (539)
T PLN02568        385 SSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLK  421 (539)
T ss_pred             CCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcC
Confidence            233333222  24456788999999999999999996

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.51  E-value=3.6e-13  Score=126.95  Aligned_cols=241  Identities=20%  Similarity=0.144  Sum_probs=142.5

Q ss_pred             hcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHh----cCCCcceEEecCCcchHHHHH
Q 018455           92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----HQKNFDLVWCRGTLREKIFEP  167 (355)
Q Consensus        92 ~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~----~~~~~~~~~~~gg~~~~l~~~  167 (355)
                      ..+..++.+|+....+.+.....++.++.....+..+...++......+......    ...........|++.    ..
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~  214 (450)
T PF01593_consen  139 EDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLS----LA  214 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTH----HH
T ss_pred             hhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchh----HH
Confidence            3456677888876655555554355666666666667777776444333322110    011111223344433    34


Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCccc
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASID  246 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~  246 (355)
                      +...+...|++|++|++|++|+.+++  +|. |++ +|++++||+||+|+|+..+.++...+.++. .....++.+.+.+
T Consensus       215 ~~~~~~~~g~~i~l~~~V~~I~~~~~--~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~-~~~~a~~~~~~~~  290 (450)
T PF01593_consen  215 LALAAEELGGEIRLNTPVTRIEREDG--GVT-VTTEDGETIEADAVISAVPPSVLKNILLLPPLPE-DKRRAIENLPYSS  290 (450)
T ss_dssp             HHHHHHHHGGGEESSEEEEEEEEESS--EEE-EEETTSSEEEESEEEE-S-HHHHHTSEEESTSHH-HHHHHHHTEEEEE
T ss_pred             HHHHHhhcCceeecCCcceecccccc--ccc-cccccceEEecceeeecCchhhhhhhhhcccccc-cccccccccccCc
Confidence            55555667889999999999999984  474 555 788999999999999999987443333321 1122456778888


Q ss_pred             EEEEEEEEccCCCCCCC-CcceeccCC--CccceeeEcccccccccCCCceEEEEEee-C-CCCCCCCCHHHHHHHHHHH
Q 018455          247 VVSVKLWFDKKVTVPNV-SNACSGFGD--SLAWTFFDLNKIYDEHKDDSATVIQADFY-H-ANELMPLKDDQVVAKAVSY  321 (355)
Q Consensus       247 ~~~v~l~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-~-~~~~~~~~~ee~~~~~~~~  321 (355)
                      +.++++.+++++|.... ...+...+.  ...+ +.+.+...+.   +++..+...+. . ...+..++++++++.++++
T Consensus       291 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~  366 (450)
T PF01593_consen  291 VSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGY-VSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDD  366 (450)
T ss_dssp             EEEEEEEESSGGGGSTTTESEEEEESSTSSEEE-EEEECCTTSC---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ceeEEEeeecccccccccccceecccCcccccc-ccccccCccc---ccCCcceeeeeccccchhcccchhhhHHHHHHH
Confidence            89999999999884321 111111122  1221 2222222111   23444333333 2 2457788999999999999


Q ss_pred             HhhhcccCCCceeeeeeEEecCC
Q 018455          322 LSKCIKDFSTATVMDHKIRRFPK  344 (355)
Q Consensus       322 l~~~~p~~~~~~~~~~~v~~~~~  344 (355)
                      |++++|.....++.+..+++|..
T Consensus       367 L~~~~~~~~~~~~~~~~~~~w~~  389 (450)
T PF01593_consen  367 LRKILPGASIPDPIDITVTRWSR  389 (450)
T ss_dssp             HHHHHTTGGGGEESEEEEEECTT
T ss_pred             hhhcccccccccccccccccccc
Confidence            99999952224555666666665

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PLN03000 amine oxidase

Probab=99.50  E-value=3.4e-12  Score=125.80  Aligned_cols=173  Identities=12%  Similarity=0.164  Sum_probs=115.2

Q ss_pred             eEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH--Hhhhcccc
Q 018455          153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSIL  230 (355)
Q Consensus       153 ~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~--~l~~~~~l  230 (355)
                      ....+||+++ ++++|++.+     .|+++++|++|.+++++  | .|+++++++.||+||+|+|+.+++  .+.+.|++
T Consensus       373 ~~~v~GG~~~-LieaLa~~L-----~I~Ln~~Vt~I~~~~dg--V-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpL  443 (881)
T PLN03000        373 HCFLPGGNGR-LVQALAENV-----PILYEKTVQTIRYGSNG--V-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPEL  443 (881)
T ss_pred             eEEeCCCHHH-HHHHHHhhC-----CcccCCcEEEEEECCCe--E-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCC
Confidence            3457799998 778887655     49999999999998753  5 466776789999999999999998  67777766


Q ss_pred             cCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceecc---CCC-cc-ceeeEcccccccccCCCceEEEEEee---C
Q 018455          231 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF---GDS-LA-WTFFDLNKIYDEHKDDSATVIQADFY---H  302 (355)
Q Consensus       231 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~---~~~-~~-~~~~~~~~~~~~~~~~~g~~l~~~~~---~  302 (355)
                      +. ...+.+++++++.+.++.+.|++++|.. ... .++.   +.. -+ +..+. + ..+.   .++.++. .|.   .
T Consensus       444 P~-~K~~AI~rL~~G~l~KViL~Fd~~FW~~-d~~-~FG~l~~~~~~rg~~~~f~-s-~sp~---~G~pVLv-afv~Gd~  514 (881)
T PLN03000        444 PQ-RKLDCIKRLGFGLLNKVAMLFPYVFWST-DLD-TFGHLTEDPNYRGEFFLFY-S-YAPV---AGGPLLI-ALVAGEA  514 (881)
T ss_pred             CH-HHHHHHHcCCCcceEEEEEEeCCccccC-CCC-ceeEEecCCCCCceeEEEe-C-CCCC---CCCcEEE-EEecCch
Confidence            42 2224678999999999999999999942 111 2221   111 00 11121 1 1111   1233433 333   3


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhccc--CCCceeeeeeEEecC
Q 018455          303 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFP  343 (355)
Q Consensus       303 ~~~~~~~~~ee~~~~~~~~l~~~~p~--~~~~~~~~~~v~~~~  343 (355)
                      +..+..++++++++.++++|+++|+.  ....+++.+.+++|.
T Consensus       515 A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~  557 (881)
T PLN03000        515 AHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWG  557 (881)
T ss_pred             hHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCC
Confidence            44677899999999999999999962  221234455555554

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.50  E-value=2.3e-12  Score=120.32  Aligned_cols=196  Identities=13%  Similarity=0.187  Sum_probs=129.5

Q ss_pred             CchHHHHHHHhCCCCCCCccc---ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHHhccC
Q 018455            8 FRNIFSLVDELGIKPFTGWMK---SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD   84 (355)
Q Consensus         8 y~~~~~l~~elGl~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   84 (355)
                      .-.+..++.+.|+.....+..   ..++..+|+.      ..     .|.+....++.+.+++.+|.++.+++..+.+.+
T Consensus        83 ~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~------~~-----vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~  151 (443)
T PTZ00363         83 SGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKI------HK-----VPATDMEALSSPLMGFFEKNRCKNFLQYVSNYD  151 (443)
T ss_pred             CChHHHHHhhcCccceeeeEEeceEEEEecCCeE------EE-----CCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhc
Confidence            355778888899886655542   2232234432      21     345555567788899999999888777665543


Q ss_pred             CC-hhhhhh--cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH--HhcCCCcceEEecCC
Q 018455           85 NT-DVAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGT  159 (355)
Q Consensus        85 ~~-~~~~~~--~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~--~~~~~~~~~~~~~gg  159 (355)
                      .. ...+..  ++++|+.+|++++++++..++ ++..++......+-.+.++...+..++.++  +..-+...+.|+.||
T Consensus       152 ~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG  230 (443)
T PTZ00363        152 ENDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYG  230 (443)
T ss_pred             cCChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCC
Confidence            21 112333  457999999999999998765 444444443222112223333333332221  121222345789999


Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccC
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVG  217 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p  217 (355)
                      +++ |++++++.++..|++++++++|++|..+++ +++++|++ +|++++|+.||+...
T Consensus       231 ~g~-L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-g~~~~V~~~~Ge~i~a~~VV~~~s  287 (443)
T PTZ00363        231 LGG-LPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSEGGEVAKCKLVICDPS  287 (443)
T ss_pred             HHH-HHHHHHHHHHHcCcEEEcCCeEEEEEEcCC-CeEEEEEECCCcEEECCEEEECcc
Confidence            998 899999999999999999999999998765 46778887 788999999999544

>TIGR02730 carot_isom carotene isomerase

Probab=99.49  E-value=5.2e-12  Score=121.12  Aligned_cols=226  Identities=15%  Similarity=0.087  Sum_probs=138.0

Q ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHHHHH
Q 018455           95 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRT  174 (355)
Q Consensus        95 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~  174 (355)
                      ..|+.++++++..++.+ +.++...+......++.+.++..++..+...     ......+++||++. ++++|.+.+++
T Consensus       169 ~~s~~~~~~~~~~~~~l-~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~-----~~~g~~~~~gG~~~-l~~~L~~~~~~  241 (493)
T TIGR02730       169 PQNAGDIARRYIRDPGL-LKFIDIECFCWSVVPADQTPMINAGMVFSDR-----HYGGINYPKGGVGQ-IAESLVKGLEK  241 (493)
T ss_pred             hccHHHHHHHhcCCHHH-HHHHHHHHHhccCCCcccchhhhHHHhhccc-----ccceEecCCChHHH-HHHHHHHHHHH
Confidence            47899999998666654 5566654433333345777776555433211     11245789999988 88999999999


Q ss_pred             cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhhhcccccCcHHHHhhccCC-cccEEEEE
Q 018455          175 RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIKNSILCNREEFLKVLNLA-SIDVVSVK  251 (355)
Q Consensus       175 ~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~~~~~l~~~~~~~~~~~l~-~~~~~~v~  251 (355)
                      +|++|+++++|++|..++  +++.+|++ +|++++||.||+|++++.+ .+|++....+. .....+++++ ..+.++++
T Consensus       242 ~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~-~~~~~~~~~~~s~s~~~~~  318 (493)
T TIGR02730       242 HGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPK-KEKNWQRNYVKSPSFLSLH  318 (493)
T ss_pred             CCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccch-hhHHHHhhccCCCceEEEE
Confidence            999999999999999876  45778888 6778999999999887654 56876543321 1112334444 34578999


Q ss_pred             EEEccCCC--CCCCCcceecc----CCCccceeeEc-ccccccccCCCceEEEEEeeC--CCCCCCC-------CHHHHH
Q 018455          252 LWFDKKVT--VPNVSNACSGF----GDSLAWTFFDL-NKIYDEHKDDSATVIQADFYH--ANELMPL-------KDDQVV  315 (355)
Q Consensus       252 l~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~--~~~~~~~-------~~ee~~  315 (355)
                      ++++++..  ....++.++..    ......++... +...|..+ |.|..+...+.+  ...|..+       .++++.
T Consensus       319 l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~a-P~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~  397 (493)
T TIGR02730       319 LGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLA-PEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADA  397 (493)
T ss_pred             EEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCC-cCCcEEEEEecCCChhhccCCCcHHHHHHHHHHH
Confidence            99988532  11112222110    11111111121 22223333 444332223332  2233222       245688


Q ss_pred             HHHHHHHhhhcccCCC
Q 018455          316 AKAVSYLSKCIKDFST  331 (355)
Q Consensus       316 ~~~~~~l~~~~p~~~~  331 (355)
                      +.+++.+++++|++++
T Consensus       398 ~~il~~l~~~~p~l~~  413 (493)
T TIGR02730       398 ERIIDRLEKIFPGLDS  413 (493)
T ss_pred             HHHHHHHHHHCCChhh
Confidence            8999999999998864

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02976 amine oxidase

Probab=99.43  E-value=5.2e-12  Score=128.36  Aligned_cols=206  Identities=15%  Similarity=0.113  Sum_probs=126.7

Q ss_pred             hCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecC--------CCC
Q 018455          124 LFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--------ERC  195 (355)
Q Consensus       124 ~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~--------~~~  195 (355)
                      ++.+++++|+.+...- ..+  ..-.+ ....++||+++ |+++|++.+     .|++|++|++|.+.+        +++
T Consensus       903 ~aa~L~eVSl~~~~qd-~~y--~~fgG-~~~rIkGGYqq-LIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~d  972 (1713)
T PLN02976        903 CAALLKEVSLPYWNQD-DVY--GGFGG-AHCMIKGGYSN-VVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRK  972 (1713)
T ss_pred             ccCCHHHhhhhhhhcc-ccc--ccCCC-ceEEeCCCHHH-HHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCC
Confidence            3678899998743210 000  11111 23457899998 667777544     599999999999842        112


Q ss_pred             eEEEEEe-CCeEEecCEEEEccChhhHH--HhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCC
Q 018455          196 CISDVVC-GKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD  272 (355)
Q Consensus       196 ~v~~v~~-~g~~~~ad~VV~a~p~~~~~--~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~  272 (355)
                      .| .|++ +|+++.||+||+|+|+.+++  .+.+.|+|+... ...+..+.++.+.++++.|+++||.. ..+ .++...
T Consensus       973 GV-tVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~K-qaAIqrLgfG~lnKV~LeFdrpFW~~-d~d-~FG~s~ 1048 (1713)
T PLN02976        973 KV-KVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWK-YSSIQRLGFGVLNKVVLEFPEVFWDD-SVD-YFGATA 1048 (1713)
T ss_pred             cE-EEEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHH-HHHHHhhccccceEEEEEeCCccccC-CCC-cccccc
Confidence            25 4655 67899999999999999987  567777775321 23568888889999999999999942 122 233210


Q ss_pred             ---C-cc--ceeeEcccccccccCCCceEEEEEee-CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEec---
Q 018455          273 ---S-LA--WTFFDLNKIYDEHKDDSATVIQADFY-HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF---  342 (355)
Q Consensus       273 ---~-~~--~~~~~~~~~~~~~~~~~g~~l~~~~~-~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~---  342 (355)
                         . .+  +.+++...  +   .+...++.+... .+..+..++++++++.+++.|+++||....+.++.+.+++|   
T Consensus      1049 edtdlrG~~~~~wnlr~--p---sG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976       1049 EETDLRGQCFMFWNVKK--T---VGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred             ccCCCCceEEEeccCCC--C---CCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCC
Confidence               0 11  11121110  1   012233332222 33456678999999999999999998532234445544544   


Q ss_pred             CCCccc
Q 018455          343 PKSLTH  348 (355)
Q Consensus       343 ~~a~~~  348 (355)
                      |++...
T Consensus      1124 PySrGS 1129 (1713)
T PLN02976       1124 PFSYGA 1129 (1713)
T ss_pred             CCcCcc
Confidence            565443

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.28  E-value=8.4e-10  Score=99.10  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=68.9

Q ss_pred             ceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh-hHHHhhhccc
Q 018455          152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS-TLQELIKNSI  229 (355)
Q Consensus       152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~-~~~~l~~~~~  229 (355)
                      ...|+.|||++ ++.++++.++++|++|.+++.|.+|..++  |++.||.+ ||++++++.||+++.++ ++.+|++...
T Consensus       255 ~~~Yp~GG~Ga-vs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~  331 (561)
T KOG4254|consen  255 GWGYPRGGMGA-VSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA  331 (561)
T ss_pred             cccCCCCChhH-HHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence            45789999999 99999999999999999999999999988  67889998 78999999999977666 5579999887


Q ss_pred             ccC
Q 018455          230 LCN  232 (355)
Q Consensus       230 l~~  232 (355)
                      +++
T Consensus       332 LPe  334 (561)
T KOG4254|consen  332 LPE  334 (561)
T ss_pred             CCc
Confidence            754

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.11  E-value=5.4e-09  Score=98.97  Aligned_cols=178  Identities=19%  Similarity=0.211  Sum_probs=117.9

Q ss_pred             EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH--hhhccccc
Q 018455          155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSILC  231 (355)
Q Consensus       155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~--l~~~~~l~  231 (355)
                      ...+|+.. +...++.     |.+|+++++|.+|.+.++ +.+ .++. ++..+.+|.||+++|..+++.  +.+.|+++
T Consensus       213 ~~~~G~~~-v~~~la~-----~l~I~~~~~v~~i~~~~~-~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp  284 (501)
T KOG0029|consen  213 LMKGGYEP-VVNSLAE-----GLDIHLNKRVRKIKYGDD-GAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP  284 (501)
T ss_pred             HhhCCccH-HHhhcCC-----CcceeeceeeEEEEEecC-Cce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence            34577765 3333432     899999999999999886 332 3443 455599999999999999987  77777764


Q ss_pred             CcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccC---CCccc--eeeEcccccccccCCCceEEEEEee-CCCC
Q 018455          232 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---DSLAW--TFFDLNKIYDEHKDDSATVIQADFY-HANE  305 (355)
Q Consensus       232 ~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~-~~~~  305 (355)
                      . .....+++++.+.+.++.+.|++.+|.+. .. .++..   ....+  .|++.   .+...  ...++..... .+..
T Consensus       285 ~-~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~-~d-~fg~~~~~~~~~~~~~f~~~---~~~~~--~~~l~~~~~~~~a~~  356 (501)
T KOG0029|consen  285 R-WKQEAIDRLGFGLVNKVILEFPRVFWDQD-ID-FFGIVPETSVLRGLFTFYDC---KPVAG--HPVLMSVVVGEAAER  356 (501)
T ss_pred             H-HHHHHHHhcCCCceeEEEEEeccccCCCC-cC-eEEEccccccccchhhhhhc---CccCC--CCeEEEEehhhhhHH
Confidence            2 22346789998899999999999999422 22 33321   11111  11222   22211  1233322222 3456


Q ss_pred             CCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccc
Q 018455          306 LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTH  348 (355)
Q Consensus       306 ~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~  348 (355)
                      +..+++++++..++..|+++|+.....++++..+++|-..-..
T Consensus       357 ~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~  399 (501)
T KOG0029|consen  357 VETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLS  399 (501)
T ss_pred             HhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccC
Confidence            7789999999999999999999444467788888888654433

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.10  E-value=2.9e-09  Score=101.68  Aligned_cols=124  Identities=21%  Similarity=0.248  Sum_probs=87.0

Q ss_pred             cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHHH
Q 018455           93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM  172 (355)
Q Consensus        93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l  172 (355)
                      ....++.++++.. +..+.++..+........ .+|.+.++.+.+  +..  ..  ......+++|||+. ++++|++.+
T Consensus       164 ~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~--~~~--~~--~~~G~~~p~GG~~a-l~~aL~~~~  234 (487)
T COG1233         164 FSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPALYLL--LSH--LG--LSGGVFYPRGGMGA-LVDALAELA  234 (487)
T ss_pred             HhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhHHHHH--HHH--hc--ccCCeeeeeCCHHH-HHHHHHHHH
Confidence            3456888888887 655555666655433223 667777622222  221  11  22346889999999 889999999


Q ss_pred             HHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhc
Q 018455          173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKN  227 (355)
Q Consensus       173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~  227 (355)
                      +++|++|+++++|++|..++  |+.+++++ +|+.+++|.||++..+.....+...
T Consensus       235 ~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~  288 (487)
T COG1233         235 REHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGE  288 (487)
T ss_pred             HHcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhh
Confidence            99999999999999999988  44445665 4568999999999988555555443

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=99.08  E-value=8.4e-09  Score=95.49  Aligned_cols=195  Identities=17%  Similarity=0.233  Sum_probs=129.4

Q ss_pred             cccCCchHHHHHHHhCCCCCCCccc---ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHH
Q 018455            4 FWYPFRNIFSLVDELGIKPFTGWMK---SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAV   80 (355)
Q Consensus         4 ~~~~y~~~~~l~~elGl~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~   80 (355)
                      ++.+...+.++|-+-|+..+..+..   ..+| .+|+      +..     .|.+-...++.+.+++.+|.++.+++...
T Consensus        80 ll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~-~~~~------l~k-----VP~sr~dvf~s~~lsl~eKR~lmkFl~~v  147 (438)
T PF00996_consen   80 LLYARGPLVKLLISSGVTRYLEFKAVDGSYVY-KNGK------LHK-----VPCSREDVFKSKLLSLFEKRRLMKFLKFV  147 (438)
T ss_dssp             BEETTSHHHHHHHHCTGGGGSEEEEESEEEEE-ETTE------EEE-------SSHHHHHC-TTS-HHHHHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHhCCcccceEEEEcceeEEE-eCCE------Eee-----CCCCHHHhhcCCCccHHHHHHHHHHHHHH
Confidence            3445567888888999986666552   3334 3454      322     34444446788899999999988887776


Q ss_pred             hccCCC-hhhhhh--cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCCh-hhccHHHHHHHHHHHH--HhcCCCcceE
Q 018455           81 IDFDNT-DVAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPA-EQCSAAATLGILYFII--LAHQKNFDLV  154 (355)
Q Consensus        81 ~~~~~~-~~~~~~--~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~~~~~~~~--~~~~~~~~~~  154 (355)
                      ..++.. +..++.  ..+.|+.++++..+.++..++ ++...+. ++..+. .+-++...+..++.++  ++.-+.+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~-~i~haia-L~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfL  225 (438)
T PF00996_consen  148 ANYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLID-FIGHAIA-LSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFL  225 (438)
T ss_dssp             HHGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHH-HHHHHTS--SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEE
T ss_pred             hhcccCCcchhhccccccccHHHHHHhcCCCHHHHH-HHHHhhh-hccCcccccccHHHHHHHHHHHHHHHhccCCCCEE
Confidence            655422 222233  347899999999999988765 4433222 222222 1235666777777663  2222345788


Q ss_pred             EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEE
Q 018455          155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVL  214 (355)
Q Consensus       155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~  214 (355)
                      ||..|.++ |+|++.+..+=.|+...||++|.+|..+++ |++.+|..+|++++|+.||+
T Consensus       226 yP~YG~GE-LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~-g~~~gV~s~ge~v~~k~vI~  283 (438)
T PF00996_consen  226 YPLYGLGE-LPQAFCRLSAVYGGTYMLNRPIDEIVVDED-GKVIGVKSEGEVVKAKKVIG  283 (438)
T ss_dssp             EETT-TTH-HHHHHHHHHHHTT-EEESS--EEEEEEETT-TEEEEEEETTEEEEESEEEE
T ss_pred             EEccCCcc-HHHHHHHHhhhcCcEEEeCCccceeeeecC-CeEEEEecCCEEEEcCEEEE
Confidence            99999999 999999998888999999999999999766 67878888999999999996

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.04  E-value=9.7e-09  Score=97.46  Aligned_cols=123  Identities=16%  Similarity=0.129  Sum_probs=89.3

Q ss_pred             hhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH---hcCCCcceEEecCCcchHHHHH
Q 018455           91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL---AHQKNFDLVWCRGTLREKIFEP  167 (355)
Q Consensus        91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~---~~~~~~~~~~~~gg~~~~l~~~  167 (355)
                      +++|+.|+.||++++++.. ....+|..+    ++- ....||..+..+++.++-   .-...+.+...+....+.++.+
T Consensus       158 ~~Ld~~tI~d~f~~~Ff~t-~Fw~~w~t~----FaF-~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~P  231 (576)
T PRK13977        158 EKLDDKTIEDWFSPEFFET-NFWYYWRTM----FAF-EKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLP  231 (576)
T ss_pred             HHhCCcCHHHHHhhcCchh-HHHHHHHHH----HCC-chhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHH
Confidence            4699999999999986644 445566665    433 488999999999987731   1112334445555565669999


Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCC--CeEEEEEe--CC--e---EEecCEEEEccChh
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVC--GK--E---TYSAGAVVLAVGIS  219 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~--~~v~~v~~--~g--~---~~~ad~VV~a~p~~  219 (355)
                      |.+.|+++|++|+++++|++|..+.++  ++|++|.+  +|  +   ....|.||+|+..-
T Consensus       232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~  292 (576)
T PRK13977        232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI  292 (576)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence            999999999999999999999986222  56878866  33  2   34689999998743

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.94  E-value=8.3e-09  Score=93.74  Aligned_cols=215  Identities=16%  Similarity=0.159  Sum_probs=123.4

Q ss_pred             HHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHHHHH----cC--cEEEcCceee
Q 018455          113 RNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRT----RG--CEFLDGRRVT  186 (355)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~----~G--~~i~l~~~V~  186 (355)
                      +.++.-.+......+.+++|...+..+-..     .+.....|.+-|... +.+.|++.+.+    .|  .+|+++++|.
T Consensus       180 ~~~~k~e~~~~~~d~l~evs~~~~~ey~~~-----~ge~~~~~~~kGy~~-iL~~l~~~~p~~~i~~~~~~~~~~~~rv~  253 (498)
T KOG0685|consen  180 NVYFKVECSITGADNLSEVSLRALLEYTEC-----PGEELLIWNKKGYKR-ILKLLMAVIPAQNIELGLWKRIHLNTRVE  253 (498)
T ss_pred             HHHHHHheeeeccCchhhhhhhhccceeec-----CchhhheechhHHHH-HHHHHhccCCCcchhcCchhhhcccccce
Confidence            333333333334445666666555432111     111234555566666 44555554422    22  4677779999


Q ss_pred             EEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHh---hhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCC
Q 018455          187 DFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL---IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN  262 (355)
Q Consensus       187 ~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l---~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~  262 (355)
                      +|..+++ ++| .|++ ||+.+.||+|||+++..++++-   ++.|+|+... ...+++++.+.+.++++-|.+|+|. .
T Consensus       254 ~I~~~~~-~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K-~~AIe~lgfGtv~KiFLE~E~pfwp-~  329 (498)
T KOG0685|consen  254 NINWKNT-GEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEK-QRAIERLGFGTVNKIFLEFEEPFWP-S  329 (498)
T ss_pred             eeccCCC-CcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHH-HHHHHhccCCccceEEEEccCCCCC-C
Confidence            9999876 456 5777 8999999999999999988762   3455554221 1267889988999999999999983 2


Q ss_pred             CCcce--eccCCC--------ccc----eeeEcccccccccCCCceEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhc
Q 018455          263 VSNAC--SGFGDS--------LAW----TFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCI  326 (355)
Q Consensus       263 ~~~~~--~~~~~~--------~~~----~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~  326 (355)
                      .++.+  +-.+..        ..|    +.|.....       ...++...+.  .+.....+++||+.+.+...|++++
T Consensus       330 ~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~-------~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl  402 (498)
T KOG0685|consen  330 DWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSW-------APNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFL  402 (498)
T ss_pred             CCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCc-------chhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhc
Confidence            22211  111111        001    11111110       1123333232  2334458899999999999999998


Q ss_pred             ccCCCce---eeeeeEEecCC
Q 018455          327 KDFSTAT---VMDHKIRRFPK  344 (355)
Q Consensus       327 p~~~~~~---~~~~~v~~~~~  344 (355)
                      ++..-+.   ++.+.|...|.
T Consensus       403 ~n~~iP~p~kilRs~W~snp~  423 (498)
T KOG0685|consen  403 KNPEIPKPKKILRSQWISNPF  423 (498)
T ss_pred             CCCCCCCchhhhhhcccCCCc
Confidence            6533233   34444444443

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.86  E-value=2.1e-09  Score=90.57  Aligned_cols=165  Identities=14%  Similarity=0.041  Sum_probs=108.3

Q ss_pred             CcEEEcCceeeEEEecCCCCeEEEEEe-CC-eEEecCEEEEccChhhHHHhhhcc--cccCcHHHHhhccCCcccEEEEE
Q 018455          176 GCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGISTLQELIKNS--ILCNREEFLKVLNLASIDVVSVK  251 (355)
Q Consensus       176 G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g-~~~~ad~VV~a~p~~~~~~l~~~~--~l~~~~~~~~~~~l~~~~~~~v~  251 (355)
                      ..+|+++++|++|...++   .|.+.+ +| +...+|.||+|+|++++..|+...  .++ ......+....|.|+.++.
T Consensus       117 dL~V~~~~rVt~v~~~~~---~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p-~~l~~~~a~V~y~Pc~s~~  192 (331)
T COG3380         117 DLTVVLETRVTEVARTDN---DWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLP-AALRAALADVVYAPCWSAV  192 (331)
T ss_pred             cchhhhhhhhhhheecCC---eeEEEecCCCcccccceEEEecCCCcchhhcCcccccch-HHHHHhhccceehhHHHHH
Confidence            458999999999999853   578888 43 578899999999999999988542  221 1223356777788999999


Q ss_pred             EEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeC--CCCCCCCCHHHHHHHHHHHHhhhcccC
Q 018455          252 LWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDF  329 (355)
Q Consensus       252 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~~~~~~~ee~~~~~~~~l~~~~p~~  329 (355)
                      ++|..+...+.+.  ++-.+.++.|.-.+  +..+... +.+.++.+...+  +..+.+.++|+.+..+......+++..
T Consensus       193 lg~~q~l~~P~~G--~~vdg~~laWla~d--~sK~g~~-p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~  267 (331)
T COG3380         193 LGYPQPLDRPWPG--NFVDGHPLAWLARD--ASKKGHV-PDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDR  267 (331)
T ss_pred             hcCCccCCCCCCC--cccCCCeeeeeecc--ccCCCCC-CcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCC
Confidence            9999887643322  33345677774333  2223332 344433232221  234456677777766666666666532


Q ss_pred             CCceeeeeeEEecCCCccccC
Q 018455          330 STATVMDHKIRRFPKSLTHFF  350 (355)
Q Consensus       330 ~~~~~~~~~v~~~~~a~~~~~  350 (355)
                      - +++.....++|+||+|.-.
T Consensus       268 ~-~~p~~s~~H~WrYA~P~~~  287 (331)
T COG3380         268 L-PEPDWSDAHRWRYAIPNDA  287 (331)
T ss_pred             C-CcchHHHhhcccccccccc
Confidence            2 4567788899999998754

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=2.7e-07  Score=82.12  Aligned_cols=197  Identities=16%  Similarity=0.219  Sum_probs=134.2

Q ss_pred             cccCCchHHHHHHHhCCCCCCCcc---cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHH
Q 018455            4 FWYPFRNIFSLVDELGIKPFTGWM---KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAV   80 (355)
Q Consensus         4 ~~~~y~~~~~l~~elGl~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~   80 (355)
                      |+-+...+..+|-+-|+..++.+.   +..+| .+|+.++           .|.+....+..+.+++.+|-+..+++.-.
T Consensus        80 ~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~-~~~k~~K-----------VP~t~~Ea~~s~lmgl~eKrr~~kFl~~V  147 (440)
T KOG1439|consen   80 FLMANGELVKILIHTGVTRYLEFKSISGSFVY-KKGKIYK-----------VPATEAEALTSPLMGLFEKRRVMKFLKFV  147 (440)
T ss_pred             hhhccchHHHHHHHhchhhheEEEeecceEEE-ECCeEEE-----------CCCCHHHHhcCCccchhHHHHHHHHHHHH
Confidence            344566688888899998665554   23333 4565432           34444446788899999999988877766


Q ss_pred             hccC-CChhhhhhcc--cccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH--HhcCCCcceEE
Q 018455           81 IDFD-NTDVAWRKYD--SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVW  155 (355)
Q Consensus        81 ~~~~-~~~~~~~~~d--~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~--~~~~~~~~~~~  155 (355)
                      ..++ ..+..|+.+|  ..|+.+++.+.+..+..++ |....+......+--+..+..++..+..|+  +..-+.+...|
T Consensus       148 ~n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~-f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~yly  226 (440)
T KOG1439|consen  148 LNYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTID-FIGHAIALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLY  226 (440)
T ss_pred             hhhhhhccccccccccccchHHHHHHHhccccccee-eeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhcCCCccee
Confidence            6543 1233444554  3499999999988888765 443344444444444555655555555442  12223334578


Q ss_pred             ecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEc
Q 018455          156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA  215 (355)
Q Consensus       156 ~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a  215 (355)
                      |..|+++ +++..++.-+=-|++..||.++.+|..+++ |++.+|..++++..++.||+-
T Consensus       227 P~yGlgE-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~-gk~igvk~~~~v~~~k~vi~d  284 (440)
T KOG1439|consen  227 PLYGLGE-LPQGFARLSAVYGGTYMLNKPIDEINETKN-GKVIGVKSGGEVAKCKKVICD  284 (440)
T ss_pred             cccCcch-hhHHHHHHhhccCceeecCCceeeeeccCC-ccEEEEecCCceeecceEEec
Confidence            9999999 899999887778999999999999999655 567778888888889988873

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=98.13  E-value=9.3e-06  Score=74.13  Aligned_cols=118  Identities=21%  Similarity=0.204  Sum_probs=82.1

Q ss_pred             hcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHH
Q 018455           92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS  171 (355)
Q Consensus        92 ~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~  171 (355)
                      .+-+.|..+||+++|+++.+++.++.+.++..|+.+ .++++...+.-+.     . ...++.-.+||-.+ +++.|.  
T Consensus        66 ~~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla-----~-a~~gl~sV~GGN~q-I~~~ll--  135 (368)
T PF07156_consen   66 NLTKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLA-----G-ATGGLWSVEGGNWQ-IFEGLL--  135 (368)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeee-----e-ccCCceEecCCHHH-HHHHHH--
Confidence            345679999999999999999999999999999987 4576655543222     1 11234557788665 666555  


Q ss_pred             HHHcCcEEEcCceeeEE-EecCCCCeEEEEEe---CC-eEEecCEEEEccChhhH
Q 018455          172 MRTRGCEFLDGRRVTDF-IYDEERCCISDVVC---GK-ETYSAGAVVLAVGISTL  221 (355)
Q Consensus       172 l~~~G~~i~l~~~V~~I-~~~~~~~~v~~v~~---~g-~~~~ad~VV~a~p~~~~  221 (355)
                       ++.|.+| ++++|++| ...+++...+.|+.   .+ ..-.+|.||+|+|.+..
T Consensus       136 -~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~  188 (368)
T PF07156_consen  136 -EASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS  188 (368)
T ss_pred             -HHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence             5568899 99999999 44444222334543   12 23457999999999643

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00018  Score=63.92  Aligned_cols=192  Identities=15%  Similarity=0.186  Sum_probs=118.0

Q ss_pred             cccCCchHHHHHHHhCCCCCCCcc---cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHH
Q 018455            4 FWYPFRNIFSLVDELGIKPFTGWM---KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAV   80 (355)
Q Consensus         4 ~~~~y~~~~~l~~elGl~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~   80 (355)
                      ++-+..++..++.+.|+..++.+.   +...| .+|+.++           .|-+-...+..+.+++.+|-+..+++.-.
T Consensus        81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~-~~~k~~k-----------VP~ne~ei~~s~~lsL~eKr~vmrFl~~V  148 (434)
T COG5044          81 FLFANSELLKILIETGVTEYLEFKQISGSFLY-RPGKIYK-----------VPYNEAEIFTSPLLSLFEKRRVMRFLKWV  148 (434)
T ss_pred             hhcccchHHHHHHHhChHhheeeeeccccEEe-cCCcEEE-----------CCccHHhhhcCCCcchhhHHHHHHHHHHH
Confidence            345667788999999998665444   23333 4555322           34444556788899999999987766443


Q ss_pred             hccCCChhhhhhcc-cccHHHHHHH-hCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH--hcCCCcceEEe
Q 018455           81 IDFDNTDVAWRKYD-SITARELFKQ-FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWC  156 (355)
Q Consensus        81 ~~~~~~~~~~~~~d-~~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~--~~~~~~~~~~~  156 (355)
                      .........++++. +.+..+++.+ .+.+.+..+.+...++.. +  + -+..+..++..+..++.  ..-+.+...||
T Consensus       149 ~n~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~-l--d-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp  224 (434)
T COG5044         149 SNYAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-L--D-LDIPAREALERILRYMRSFGDYGKSPYLYP  224 (434)
T ss_pred             HhHHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhh-c--c-ccCCchHHHHHHHHHHHhhcccCCCcceee
Confidence            32211122233333 2456666665 344444333222333322 1  2 44555655555554431  12233456789


Q ss_pred             cCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEc
Q 018455          157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA  215 (355)
Q Consensus       157 ~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a  215 (355)
                      +-|+++ +++..++...-.|++..+|+++.+|...++   |.+|..++.+..|..||..
T Consensus       225 ~YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk~---v~~v~~~~~~~ka~KiI~~  279 (434)
T COG5044         225 RYGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETKD---VETVDKGSLTQKAGKIISS  279 (434)
T ss_pred             ccCchh-hhHHHHHhhhccCceeecCcchhhhccccc---eeeeecCcceeecCcccCC
Confidence            988999 899999887778999999999999997763   4345556778888888764

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=97.49  E-value=0.00041  Score=63.47  Aligned_cols=95  Identities=22%  Similarity=0.248  Sum_probs=61.6

Q ss_pred             ChhhccHHHHHHHHHHHHHhcCCCcceEEecCC---cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC
Q 018455          127 PAEQCSAAATLGILYFIILAHQKNFDLVWCRGT---LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG  203 (355)
Q Consensus       127 ~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg---~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~  203 (355)
                      +.+.++...+...+...  .......+..+.+|   ... +.+.|.+.+++.|++|+.+++|++|..++  +++.+|.++
T Consensus       112 ~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~g~i~~~~-l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~  186 (358)
T PF01266_consen  112 PYELLSPEELRELFPFL--NPRIEGGVFFPEGGVIDPRR-LIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTS  186 (358)
T ss_dssp             TEEEEEHHHHHHHSTTS--STTTEEEEEETTEEEEEHHH-HHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEET
T ss_pred             cccccchhhhhhhhccc--ccchhhhhcccccccccccc-hhhhhHHHHHHhhhhccccccccchhhcc--ccccccccc
Confidence            55556665554433211  11111123345555   344 77889999999999999999999999988  457779886


Q ss_pred             CeEEecCEEEEccChhhHHHhhhc
Q 018455          204 KETYSAGAVVLAVGISTLQELIKN  227 (355)
Q Consensus       204 g~~~~ad~VV~a~p~~~~~~l~~~  227 (355)
                      ++.++||.||+|+.++... |+..
T Consensus       187 ~g~i~ad~vV~a~G~~s~~-l~~~  209 (358)
T PF01266_consen  187 DGEIRADRVVLAAGAWSPQ-LLPL  209 (358)
T ss_dssp             TEEEEECEEEE--GGGHHH-HHHT
T ss_pred             ccccccceeEeccccccee-eeec
Confidence            6569999999999987643 4433

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.37  E-value=0.0047  Score=57.78  Aligned_cols=138  Identities=17%  Similarity=0.137  Sum_probs=86.6

Q ss_pred             CCCHHhhhchhhHHHHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHH
Q 018455           64 RLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI  143 (355)
Q Consensus        64 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~  143 (355)
                      .|+..+++.+.+++..      .+   +.+++.++.||+....+.-    +||. +.+..|+-.|. -||..+..+++.+
T Consensus       121 ~Ls~k~r~eL~kL~l~------~E---~~L~~~~I~d~F~~~FF~S----nFW~-~W~T~FAFqpW-hSa~E~rRyl~Rf  185 (500)
T PF06100_consen  121 GLSEKDRMELIKLLLT------PE---EDLGDKRIEDWFSESFFES----NFWY-MWSTMFAFQPW-HSAVEFRRYLHRF  185 (500)
T ss_pred             CCCHHHHHHHHHHhcC------CH---HHhCcccHHHhcchhhhcC----chhH-hHHHhhccCcc-hhHHHHHHHHHHH
Confidence            3566666666554332      12   2588999999988764433    3443 23335555543 5888888888887


Q ss_pred             HHhcCCC----cceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCC--eEEEEEe--CCe--EE---ecC
Q 018455          144 ILAHQKN----FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC--CISDVVC--GKE--TY---SAG  210 (355)
Q Consensus       144 ~~~~~~~----~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~--~v~~v~~--~g~--~~---~ad  210 (355)
                      + ..-.+    +.+...+-...+.++.+|.+.|+++|+++++|++|+.|..+.+++  .+..+.+  +|+  ++   +-|
T Consensus       186 ~-h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~D  264 (500)
T PF06100_consen  186 I-HEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDD  264 (500)
T ss_pred             H-HhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCC
Confidence            4 22111    122233444445588999999999999999999999999874422  2334443  442  33   357


Q ss_pred             EEEEccC
Q 018455          211 AVVLAVG  217 (355)
Q Consensus       211 ~VV~a~p  217 (355)
                      .|+++..
T Consensus       265 lV~vT~G  271 (500)
T PF06100_consen  265 LVFVTNG  271 (500)
T ss_pred             EEEEECC
Confidence            8888765

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.21  E-value=0.0012  Score=61.58  Aligned_cols=64  Identities=22%  Similarity=0.322  Sum_probs=44.9

Q ss_pred             EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      .||.-.-...+.+.|.+.+++.|++|+++++|.+|+.+++  .+..|.+ +++++.||.||+|+...
T Consensus       101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~~f~v~~~~~~~~~a~~vILAtGG~  165 (409)
T PF03486_consen  101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED--GVFGVKTKNGGEYEADAVILATGGK  165 (409)
T ss_dssp             EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT--EEEEEEETTTEEEEESEEEE----S
T ss_pred             ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC--ceeEeeccCcccccCCEEEEecCCC
Confidence            4565433333889999999999999999999999999874  3668988 88999999999998753

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.18  E-value=0.0014  Score=59.71  Aligned_cols=57  Identities=18%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ  222 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~  222 (355)
                      +...+.+.++++|++|+.+++|++|..++  +++++|.+++++++||.||+|+.++.-.
T Consensus       139 l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~  195 (337)
T TIGR02352       139 LLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE  195 (337)
T ss_pred             HHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh
Confidence            66788888889999999999999999876  4577787766689999999999998754

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.0097  Score=53.88  Aligned_cols=151  Identities=11%  Similarity=0.087  Sum_probs=99.4

Q ss_pred             cccCCCCCHHhhhchhhHHHHHhcc--CCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHH
Q 018455           59 YTQFSRLPLVDRLTSLPLMAAVIDF--DNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT  136 (355)
Q Consensus        59 ~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  136 (355)
                      .+..+.|++.+|.-+.+++..-...  +..+....+..+.++.+||+..+.++.+.. ++-   .++--.+.++.++...
T Consensus       184 vFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~~~~e~~F~EyL~~~rltp~lqs-~vl---~aIaM~~~~~~tt~eG  259 (547)
T KOG4405|consen  184 VFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYVEFRERPFSEYLKTMRLTPKLQS-IVL---HAIAMLSESQLTTIEG  259 (547)
T ss_pred             hhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHHHhhcCcHHHHHHhcCCChhhHH-HHH---HHHHhcCcccccHHHH
Confidence            5677889999988876655543333  222334455678899999999999998654 432   2222335566777777


Q ss_pred             HHHHHHHH--HhcCCCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEE-EEEeCCeEEecCEEE
Q 018455          137 LGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCGKETYSAGAVV  213 (355)
Q Consensus       137 ~~~~~~~~--~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~-~v~~~g~~~~ad~VV  213 (355)
                      +...+.++  +++-+...+.+|--|.++ +++.+.+..+=.|+---|+.+|+.|..+.....+. .+...|..+.++.+|
T Consensus       260 m~at~~fl~slGrfgntpfLfPlYGqGE-LpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v  338 (547)
T KOG4405|consen  260 MDATKNFLTSLGRFGNTPFLFPLYGQGE-LPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFV  338 (547)
T ss_pred             HHHHHHHHHHhhccCCCcceeeccCCCc-chHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeee
Confidence            76666653  233334557788889999 89999998887898888999999999876432211 111135555555444


Q ss_pred             E
Q 018455          214 L  214 (355)
Q Consensus       214 ~  214 (355)
                      +
T Consensus       339 ~  339 (547)
T KOG4405|consen  339 V  339 (547)
T ss_pred             e
Confidence            4

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.09  E-value=0.0012  Score=59.82  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=50.6

Q ss_pred             EEec-CCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          154 VWCR-GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       154 ~~~~-gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      .+|+ ...++ |.+.|.+.+++.|++|+++++|.+|+.++++   ..+.+ +|++++||.+|+|+...
T Consensus       103 ~Fp~sdkA~~-Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~---f~l~t~~g~~i~~d~lilAtGG~  166 (408)
T COG2081         103 MFPDSDKASP-IVDALLKELEALGVTIRTRSRVSSVEKDDSG---FRLDTSSGETVKCDSLILATGGK  166 (408)
T ss_pred             ecCCccchHH-HHHHHHHHHHHcCcEEEecceEEeEEecCce---EEEEcCCCCEEEccEEEEecCCc
Confidence            4566 44555 8899999999999999999999999998742   35777 45689999999999843

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=96.99  E-value=0.067  Score=51.91  Aligned_cols=56  Identities=20%  Similarity=0.204  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~~  221 (355)
                      +...+++.+.++|++|+.+++|++|+.++  +++++|++    +|  .++.|+.||.|+.++.-
T Consensus       130 l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~  191 (516)
T TIGR03377       130 LVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG  191 (516)
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence            55677778888999999999999999876  45666664    24  37899999999999863

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=96.97  E-value=0.076  Score=52.72  Aligned_cols=56  Identities=21%  Similarity=0.112  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecC-CCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~-~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +...+++.+++.|++|+.+++|.+|..++ + +++++|++    +|+  ++.||.||+|+.++.
T Consensus       234 l~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws  296 (627)
T PLN02464        234 LNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC  296 (627)
T ss_pred             HHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence            66778888888999999999999998864 2 44666654    343  689999999999985

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=96.95  E-value=0.0031  Score=59.32  Aligned_cols=56  Identities=20%  Similarity=0.211  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~  221 (355)
                      +.+.+.+.+++.|++|+++++|++|+.++  +++++|++++.+++||.||+|+.++..
T Consensus       203 ~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~~  258 (416)
T PRK00711        203 FTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYST  258 (416)
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcchH
Confidence            66778888888999999999999999876  346667777778999999999999763

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=96.92  E-value=0.0036  Score=58.20  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeE-EecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKET-YSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~-~~ad~VV~a~p~~~  220 (355)
                      +...+++.++++|++|++|++|+.|+.++||  ++.+.+ +|++ ++|+.||.+.+...
T Consensus       155 ~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg--~~~~~~~~g~~~~~ak~Vin~AGl~A  211 (429)
T COG0579         155 LTRALAEEAQANGVELRLNTEVTGIEKQSDG--VFVLNTSNGEETLEAKFVINAAGLYA  211 (429)
T ss_pred             HHHHHHHHHHHcCCEEEecCeeeEEEEeCCc--eEEEEecCCcEEEEeeEEEECCchhH
Confidence            5677888999999999999999999999874  444555 5655 99999999998765

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.83  E-value=0.0054  Score=56.98  Aligned_cols=66  Identities=20%  Similarity=0.209  Sum_probs=53.3

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChhhHHHhhhc
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQELIKN  227 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~~~~~l~~~  227 (355)
                      .+..+.++|.+.++++|+++..+++|.++..++  +++++|.+ ++  .+++||+||+|+.++....|+.+
T Consensus       261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~  329 (419)
T TIGR03378       261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE  329 (419)
T ss_pred             cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence            445577889999999999999999999999887  45777775 43  48999999999999965666443

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.70  E-value=0.0056  Score=56.32  Aligned_cols=55  Identities=24%  Similarity=0.210  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.|++.|++|+++|.|..|+.+++  .+.+|.+ +|+++.+|+||+|+.-..
T Consensus       175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~~--~~~~v~~~~g~~i~~~~vvlA~Grsg  230 (486)
T COG2509         175 VVKNIREYLESLGGEIRFNTEVEDIEIEDN--EVLGVKLTKGEEIEADYVVLAPGRSG  230 (486)
T ss_pred             HHHHHHHHHHhcCcEEEeeeEEEEEEecCC--ceEEEEccCCcEEecCEEEEccCcch
Confidence            557788899999999999999999999884  3666766 688999999999997643

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=96.61  E-value=0.3  Score=47.71  Aligned_cols=55  Identities=24%  Similarity=0.222  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~  220 (355)
                      +..+++..+.++|++|+.+++|++|..++  +++++|.+    +|  .+++||.||.|+.++.
T Consensus       151 l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        151 LTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             HHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence            55566777788999999999999999876  45777764    23  4789999999999986

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.55  E-value=0.13  Score=49.34  Aligned_cols=92  Identities=20%  Similarity=0.159  Sum_probs=60.4

Q ss_pred             eEEecCCcc-hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhHH--H
Q 018455          153 LVWCRGTLR-EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTLQ--E  223 (355)
Q Consensus       153 ~~~~~gg~~-~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~~~--~  223 (355)
                      +.|+.+-.. .++.-..+..+.++|.+|+..++|+++..++  + |++|.+    +|+  +++|+.||-|+.||.-.  +
T Consensus       154 ~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~  230 (532)
T COG0578         154 FRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILE  230 (532)
T ss_pred             EEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHH
Confidence            445544321 2244455666778999999999999999987  5 889986    243  57899999999999744  2


Q ss_pred             hhhcccccCcHHHHhhccCCcccEEEEEEEEcc
Q 018455          224 LIKNSILCNREEFLKVLNLASIDVVSVKLWFDK  256 (355)
Q Consensus       224 l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~  256 (355)
                      ......   ..   .   ....+...+|+.+++
T Consensus       231 ~~~~~~---~~---~---~~vr~skGsHlVv~~  254 (532)
T COG0578         231 MAGLEQ---SP---H---IGVRPSKGSHLVVDK  254 (532)
T ss_pred             hhcccC---CC---C---ccceeccceEEEecc
Confidence            221111   00   0   112255677888888

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=96.52  E-value=0.0098  Score=57.03  Aligned_cols=56  Identities=14%  Similarity=0.163  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHH----cC--cEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~----~G--~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~  221 (355)
                      +...+.+.+++    .|  ++|+++++|++|+.+++  .++.|.++.++++||.||+|+.++..
T Consensus       213 L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~--~~~~V~T~~G~i~A~~VVvaAG~~S~  274 (497)
T PTZ00383        213 LSESFVKHARRDALVPGKKISINLNTEVLNIERSND--SLYKIHTNRGEIRARFVVVSACGYSL  274 (497)
T ss_pred             HHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC--CeEEEEECCCEEEeCEEEECcChhHH
Confidence            66788888888    77  68999999999998753  25678776668999999999998864

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.51  E-value=0.013  Score=55.52  Aligned_cols=64  Identities=20%  Similarity=0.189  Sum_probs=49.0

Q ss_pred             EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCeEEecCEEEEccChh
Q 018455          155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~ad~VV~a~p~~  219 (355)
                      ++.++... +.+.|.+.+++.|++|+++++|++|..+++++++.+|..  ++.++.|+.||+|+...
T Consensus       117 ~~~~~g~~-l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~  182 (432)
T TIGR02485       117 FLRGGGKA-LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL  182 (432)
T ss_pred             eecCCHHH-HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence            34444444 778899999999999999999999998631156777765  34588999999999854

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=96.35  E-value=0.011  Score=49.47  Aligned_cols=53  Identities=25%  Similarity=0.193  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-g~~~~ad~VV~a~p~~  219 (355)
                      +.+-+.+.+++.+.+|+++++|++|..++++   +.|++. +++++||+||+|+...
T Consensus        84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~---w~v~~~~~~~~~a~~VVlAtG~~  137 (203)
T PF13738_consen   84 VLDYLQEYAERFGLEIRFNTRVESVRRDGDG---WTVTTRDGRTIRADRVVLATGHY  137 (203)
T ss_dssp             HHHHHHHHHHHTTGGEETS--EEEEEEETTT---EEEEETTS-EEEEEEEEE---SS
T ss_pred             HHHHHHHHHhhcCcccccCCEEEEEEEeccE---EEEEEEecceeeeeeEEEeeecc
Confidence            5556666677788899999999999999863   678874 5699999999999853

...

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=96.30  E-value=0.0036  Score=57.68  Aligned_cols=115  Identities=13%  Similarity=0.082  Sum_probs=76.4

Q ss_pred             cHHHHH---HHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcC---CCcceEEecCCcchHHHHHHHH
Q 018455           97 TARELF---KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ---KNFDLVWCRGTLREKIFEPWMD  170 (355)
Q Consensus        97 s~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~---~~~~~~~~~gg~~~~l~~~l~~  170 (355)
                      ++.+|.   .+. +++.+.+.|+.|...-.|+.+|+++++.++. .+..-+....   ...-.++|++|... +.+.|  
T Consensus       130 ~~~e~~d~~~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~-RvP~~~~~d~~yf~d~~q~~P~~Gyt~-~~~~m--  204 (377)
T TIGR00031       130 ELQEIADPDIQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIG-RVPVVLSEDSSYFPDRYQGLPKGGYTK-LFEKM--  204 (377)
T ss_pred             CHHHHHHHHHHH-HHHHHHHHhccccCceeeCCChHHCCHHHeE-ecceEecCCCCcccccccccccccHHH-HHHHH--
Confidence            455555   766 8999999999999999999999999998775 2221110000   01124679999555 44433  


Q ss_pred             HHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH
Q 018455          171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE  223 (355)
Q Consensus       171 ~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~  223 (355)
                       +...+.+|+||+.+..+...+  +   .+..+++.+. +.||.+.|.+.+-.
T Consensus       205 -l~~~~i~v~l~~~~~~~~~~~--~---~~~~~~~~~~-~~vi~Tg~id~~f~  250 (377)
T TIGR00031       205 -LDHPLIDVKLNCHINLLKDKD--S---QLHFANKAIR-KPVIYTGLIDQLFG  250 (377)
T ss_pred             -HhcCCCEEEeCCccceeeccc--c---ceeecccccc-CcEEEecCchHHHh
Confidence             344578999999888887543  2   2433333333 88999988876543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.23  E-value=0.016  Score=53.33  Aligned_cols=62  Identities=23%  Similarity=0.382  Sum_probs=47.6

Q ss_pred             EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCeEEecCEEEEccChhh
Q 018455          154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~ad~VV~a~p~~~  220 (355)
                      .||.-.-.+-+.+.|.+.+++.|++|+++++|++|  +++ +  ..|.+  ++++++||.||+|+....
T Consensus        78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-~--~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-T--LRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-c--EEEEECCCceEEecCEEEEcCCCcc
Confidence            55654444448899999999999999999999999  332 2  45665  335799999999998754

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=96.16  E-value=0.016  Score=55.38  Aligned_cols=54  Identities=17%  Similarity=0.054  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~  221 (355)
                      ++..|++.+++.|++|+.+++|++|+. +  + .+.|.+++++++||+||+|+.++..
T Consensus       185 l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~-~~~v~t~~g~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       185 LVRGLRRVALELGVEIHENTPMTGLEE-G--Q-PAVVRTPDGQVTADKVVLALNAWMA  238 (460)
T ss_pred             HHHHHHHHHHHcCCEEECCCeEEEEee-C--C-ceEEEeCCcEEECCEEEEccccccc
Confidence            667888888899999999999999975 3  2 2357776668999999999988753

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=96.12  E-value=0.011  Score=54.98  Aligned_cols=64  Identities=17%  Similarity=0.161  Sum_probs=47.8

Q ss_pred             EEecCCc--chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455          154 VWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       154 ~~~~gg~--~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~  221 (355)
                      .++.+|.  ...+...|.+.+++ |++|+.+++|++|+.+++  ++ .|++ +|+++.||.||+|+.++..
T Consensus       125 ~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~--~~-~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       125 FFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE--GW-QLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             EeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC--eE-EEEeCCCCEEEcCEEEEcCCcccc
Confidence            3445553  12266778888878 999999999999998763  34 5766 4566899999999998863

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=96.08  E-value=0.025  Score=53.04  Aligned_cols=57  Identities=19%  Similarity=0.187  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~  221 (355)
                      +...+.+.+.+.|+++..+++|++|+.+++ +++++|.+++.++.|+.||+++.++..
T Consensus       185 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~g~i~a~~vVvaagg~~~  241 (407)
T TIGR01373       185 VAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTRGFIGAKKVGVAVAGHSS  241 (407)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCCceEECCEEEECCChhhH
Confidence            455677778889999999999999986543 346678776558999999999888753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=95.94  E-value=0.029  Score=52.40  Aligned_cols=54  Identities=20%  Similarity=0.281  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|.+|..+++  .+ .|.++++++.||.||+|+.++.
T Consensus       151 l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~--~~-~V~~~~g~i~ad~vV~A~G~~s  204 (393)
T PRK11728        151 VAEAMAELIQARGGEIRLGAEVTALDEHAN--GV-VVRTTQGEYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEecCC--eE-EEEECCCEEEeCEEEECCCcch
Confidence            677888888889999999999999988763  34 5777655899999999999875

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=95.94  E-value=0.028  Score=52.06  Aligned_cols=54  Identities=22%  Similarity=0.317  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++.|++++.+++|++|+.+++  .+ .|.++++++.||.||+|+.++.
T Consensus       147 ~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~--~~-~v~~~~~~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       147 ALRALQELAEAHGATVRDGTKVVEIEPTEL--LV-TVKTTKGSYQANKLVVTAGAWT  200 (380)
T ss_pred             HHHHHHHHHHHcCCEEECCCeEEEEEecCC--eE-EEEeCCCEEEeCEEEEecCcch
Confidence            557777778889999999999999998763  35 4767656899999999999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=95.89  E-value=0.036  Score=53.07  Aligned_cols=54  Identities=28%  Similarity=0.238  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC---C--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~---g--~~~~ad~VV~a~p~~  219 (355)
                      +...|.+.+++.|++|+++++|++|..++  ++|++|.+.   +  .++.|+.||+|+...
T Consensus       133 l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~  191 (466)
T PRK08274        133 LVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGGF  191 (466)
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence            67888888889999999999999999865  568787652   2  468999999999864

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=95.84  E-value=0.035  Score=52.21  Aligned_cols=58  Identities=28%  Similarity=0.325  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhH
Q 018455          162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL  221 (355)
Q Consensus       162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~~  221 (355)
                      ..+.+.+.+.+++.|++|+++++|++|..++  ++|.+|..    +|+  ++.|+.||+|+.....
T Consensus       141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  141 KALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            3377889999999999999999999999986  57888865    354  5789999999987654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=95.77  E-value=0.044  Score=51.83  Aligned_cols=55  Identities=20%  Similarity=0.338  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+++|++|..++  +++.+++.+|++++||.||.|+..+.
T Consensus       110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s  164 (428)
T PRK10157        110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS  164 (428)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence            44557777788899999999999998876  44656666788899999999998754

>TIGR00275 flavoprotein, HI0933 family

Probab=95.72  E-value=0.05  Score=50.93  Aligned_cols=63  Identities=19%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      ++.......+.+.+.+.+++.|++|+++++|++|..+++   .+.|.++++++.||.||+|+....
T Consensus        98 ~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~---~~~v~~~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275        98 FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDN---GFGVETSGGEYEADKVILATGGLS  160 (400)
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC---eEEEEECCcEEEcCEEEECCCCcc
Confidence            343333333778899999999999999999999987653   345777777899999999999743

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.46  E-value=0.052  Score=53.16  Aligned_cols=60  Identities=18%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             cCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEec-CEEEEccChhh
Q 018455          157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST  220 (355)
Q Consensus       157 ~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~a-d~VV~a~p~~~  220 (355)
                      .+| +. +..+|.+.+++.|++|+++++|++|..++  |+|++|..  +|+  .+.| +.||+|+....
T Consensus       214 ~~G-~~-l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~  278 (564)
T PRK12845        214 AGG-QA-LAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFD  278 (564)
T ss_pred             CCh-HH-HHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence            445 44 77899998989999999999999998754  67888865  443  3556 58999998754

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=95.46  E-value=0.056  Score=53.20  Aligned_cols=55  Identities=16%  Similarity=0.231  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEec-CEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~a-d~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|..++  ++|.+|..  +++  +++| +.||+|+....
T Consensus       219 l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        219 LVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            67889888999999999999999998865  56777755  333  5788 99999998875

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.42  E-value=0.059  Score=53.03  Aligned_cols=56  Identities=18%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecC-EEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VV~a~p~~~  220 (355)
                      +...|.+.+++.|++|+++++|++|..+++ |+|++|..  +|+  .+.|+ .||+|+..-.
T Consensus       215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~  275 (584)
T PRK12835        215 LVARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFD  275 (584)
T ss_pred             HHHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence            667788888889999999999999999755 67888866  343  47787 6999998654

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=95.39  E-value=0.063  Score=46.89  Aligned_cols=56  Identities=27%  Similarity=0.276  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC------------CeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~------------g~~~~ad~VV~a~p~~~  220 (355)
                      +...|.+.+.+.|++|+++++|.+|..+++ +++.+|.++            ..+++|+.||.|+..+.
T Consensus       106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a  173 (257)
T PRK04176        106 AAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA  173 (257)
T ss_pred             HHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence            667788888889999999999999998764 357777642            14789999999998754

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=95.39  E-value=0.057  Score=49.95  Aligned_cols=55  Identities=24%  Similarity=0.300  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~  221 (355)
                      +...+.+.+.+.|++|+++++|++|+.+++  .+ .|.+++.++.||.||+|+.++..
T Consensus       151 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~~g~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        151 AIKAHLRLAREAGAELLFNEPVTAIEADGD--GV-TVTTADGTYEAKKLVVSAGAWVK  205 (376)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEeeCC--eE-EEEeCCCEEEeeEEEEecCcchh
Confidence            445666677778999999999999998763  24 57776558999999999998753

>PRK10015 oxidoreductase; Provisional

Probab=95.37  E-value=0.08  Score=50.06  Aligned_cols=55  Identities=24%  Similarity=0.430  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+++|+.|..++  +++.+|.+++++++||.||.|.....
T Consensus       110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s  164 (429)
T PRK10015        110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNS  164 (429)
T ss_pred             HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcch
Confidence            44457777788899999999999998776  44666777778899999999998754

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=95.34  E-value=0.094  Score=51.47  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=49.2

Q ss_pred             ecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       156 ~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      ..++.+..+...|.+.+.+.|++|..+++|++|..++  |+|.||..    +|+  .+.|+.||+||....
T Consensus       113 ~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~  181 (565)
T TIGR01816       113 AADRTGHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG  181 (565)
T ss_pred             cCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence            3334444477888888888899999999999999864  67888864    353  578999999998754

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=95.31  E-value=0.069  Score=47.48  Aligned_cols=59  Identities=24%  Similarity=0.295  Sum_probs=46.9

Q ss_pred             HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHh
Q 018455          166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL  224 (355)
Q Consensus       166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l  224 (355)
                      .++.+.++++|+.++-+..|..++..+..+...+|++ +|..+.|+.+|+|+.+|..+-|
T Consensus       157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL  216 (399)
T KOG2820|consen  157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLL  216 (399)
T ss_pred             HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhc
Confidence            5677888899999999999999996533233445655 7888999999999999987643

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.29  E-value=0.071  Score=50.04  Aligned_cols=55  Identities=18%  Similarity=0.231  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CC----eEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK----ETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g----~~~~ad~VV~a~p~~~~  221 (355)
                      +...+.+.+++.|++|+.+++|++|..+++  .+ .+.+  ++    .+++||.||+|+.++..
T Consensus       199 ~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~--~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s~  259 (410)
T PRK12409        199 FTTGLAAACARLGVQFRYGQEVTSIKTDGG--GV-VLTVQPSAEHPSRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--EE-EEEEEcCCCCccceEecCEEEECCCcChH
Confidence            556778888889999999999999987663  34 3433  22    37899999999999864

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.29  E-value=0.077  Score=51.94  Aligned_cols=57  Identities=18%  Similarity=0.242  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecC-EEEEccChhh
Q 018455          162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST  220 (355)
Q Consensus       162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VV~a~p~~~  220 (355)
                      ..+...|.+.+++.|++|+++++|++|..++  ++|.+|..  +|+  .+.|+ .||+|+..-.
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~  269 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFG  269 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence            3477888888989999999999999999875  67888876  454  46785 7999998654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=95.28  E-value=0.067  Score=50.74  Aligned_cols=57  Identities=30%  Similarity=0.343  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~~~  221 (355)
                      +.+.|.+.+++.|++|+++++|++|..+++ ++|++|.+   +++  .+.++.||+|+.....
T Consensus       132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            678888888899999999999999998654 56777765   333  4689999999987553

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=95.24  E-value=0.072  Score=51.10  Aligned_cols=55  Identities=13%  Similarity=0.158  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~  220 (355)
                      +..++.+.+++.|++|+++++|++|+.+++ +.+ .|++    +|  .+++||.||+|+..+.
T Consensus       180 l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       180 LTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence            678888888889999999999999998654 223 3432    23  3689999999999876

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK07121 hypothetical protein; Validated

Probab=95.17  E-value=0.083  Score=50.93  Aligned_cols=57  Identities=25%  Similarity=0.286  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEec-CEEEEccChhh
Q 018455          163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST  220 (355)
Q Consensus       163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~a-d~VV~a~p~~~  220 (355)
                      .+.+.|.+.+++.|++|+++++|++|..+++ |+|++|..  +++  .+.| +.||+|+....
T Consensus       178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~  239 (492)
T PRK07121        178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFA  239 (492)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence            3778898889899999999999999998754 56888866  333  5788 99999998755

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.17  E-value=0.11  Score=50.97  Aligned_cols=65  Identities=17%  Similarity=0.237  Sum_probs=50.1

Q ss_pred             EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +..++.+..+...|.+.+.+.|++|..++++++|..+++ |+|.||..    +|+  .+.|+.||+||....
T Consensus       119 ~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  189 (570)
T PRK05675        119 AAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAG  189 (570)
T ss_pred             ecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence            333434444778888888888999999999999998654 67888865    343  578999999998754

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.01  E-value=0.13  Score=48.67  Aligned_cols=62  Identities=11%  Similarity=0.257  Sum_probs=45.3

Q ss_pred             ecCCcchHHHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChh
Q 018455          156 CRGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       156 ~~gg~~~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~  219 (355)
                      +....+..+.+.|.+.+++ .|++|+++++|++|..++  ++|.+|..  +++  ++.|+.||+|+...
T Consensus       122 ~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~  188 (433)
T PRK06175        122 FKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGGI  188 (433)
T ss_pred             cCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence            3333333366778877765 589999999999998765  56777643  444  58999999999873

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=94.98  E-value=0.12  Score=50.93  Aligned_cols=57  Identities=26%  Similarity=0.311  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEec-CEEEEccChhhH
Q 018455          163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGISTL  221 (355)
Q Consensus       163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~a-d~VV~a~p~~~~  221 (355)
                      .+.+.|.+.+++.|++|+++++|.+|..++  ++|.+|..  +|+  ++.| +.||+|+.....
T Consensus       222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        222 ALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence            377889899999999999999999998765  56888876  343  4676 689999987643

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.96  E-value=0.14  Score=50.67  Aligned_cols=61  Identities=23%  Similarity=0.228  Sum_probs=48.1

Q ss_pred             CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +.+..+...|.+.+.+.|++|..+++|++|..+++ |+|.||..    +|+  .+.|+.||+||....
T Consensus       146 ~tG~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  212 (598)
T PRK09078        146 RTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG  212 (598)
T ss_pred             CCHHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            34444778888888888999999999999998754 57888864    343  678999999998754

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=94.95  E-value=0.11  Score=48.69  Aligned_cols=59  Identities=17%  Similarity=0.157  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChhhHHHh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQEL  224 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~~~~~l  224 (355)
                      +.+.+.+.+++.|++|+++++|.+++.++  +++..+.. +|  ..++||.||+|+....-..|
T Consensus       261 L~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL  322 (422)
T PRK05329        261 LQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSFFSGGL  322 (422)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCcccCce
Confidence            77888888989999999999999999876  34655544 44  36899999999987544444

>TIGR00292 thiazole biosynthesis enzyme

Probab=94.86  E-value=0.15  Score=44.50  Aligned_cols=56  Identities=21%  Similarity=0.303  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC------------CeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~------------g~~~~ad~VV~a~p~~  219 (355)
                      +.+.|.+.+.+.|++|+.++.|.+|..++++.++.+|+++            ..+++|+.||.|++..
T Consensus       102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~  169 (254)
T TIGR00292       102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD  169 (254)
T ss_pred             HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence            5567777888889999999999999987642257787763            1478999999999865

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.80  E-value=0.16  Score=50.06  Aligned_cols=64  Identities=13%  Similarity=0.164  Sum_probs=49.1

Q ss_pred             ecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       156 ~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      ..++.+..|...|.+.+.+.|++|.+++.|++|..+++ |+|.||..    +|+  .+.|+.||+||....
T Consensus       137 ~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  206 (588)
T PRK08958        137 AADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAG  206 (588)
T ss_pred             cCCCCHHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            33344554778888887778999999999999998644 67888864    343  578999999998754

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=94.79  E-value=0.11  Score=49.95  Aligned_cols=56  Identities=21%  Similarity=0.282  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~~  221 (355)
                      +.+.|.+.+++.| ++|+++++|++|+.+++ +.+ .|++    +|+  +++|+.||+|+..+..
T Consensus       185 l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~  247 (494)
T PRK05257        185 LTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL  247 (494)
T ss_pred             HHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCE-EEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence            6788888888877 69999999999998665 323 3432    243  6899999999998863

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=94.69  E-value=0.26  Score=46.12  Aligned_cols=61  Identities=20%  Similarity=0.209  Sum_probs=48.1

Q ss_pred             chHHHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe----C--CeEEecCEEEEccChhhHHHh
Q 018455          161 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----G--KETYSAGAVVLAVGISTLQEL  224 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~----~--g~~~~ad~VV~a~p~~~~~~l  224 (355)
                      +. +...|.+.+++. |.+|++++.|+.|++.+||  -|.|.+    .  ..+++|+.|++......+.-|
T Consensus       181 G~-LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg--~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL  248 (488)
T PF06039_consen  181 GA-LTRQLVEYLQKQKGFELHLNHEVTDIKRNGDG--RWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLL  248 (488)
T ss_pred             HH-HHHHHHHHHHhCCCcEEEecCEeCeeEECCCC--CEEEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence            55 778888888876 8999999999999999874  355544    2  358999999998888776543

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=94.69  E-value=0.11  Score=50.19  Aligned_cols=56  Identities=21%  Similarity=0.268  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChhh
Q 018455          163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~~~  220 (355)
                      .+.+.|.+.+++.|++|+++++|++|..++  |+|.+|.+   ++  .++.|+.||+|+....
T Consensus       191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~  251 (506)
T PRK06481        191 YLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGGFG  251 (506)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence            367888888889999999999999998765  56777765   33  3689999999997543

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.68  E-value=0.13  Score=50.33  Aligned_cols=58  Identities=19%  Similarity=0.192  Sum_probs=45.3

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecC-EEEEccChhh
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST  220 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VV~a~p~~~  220 (355)
                      +..+...|.+.+++.|++|+++++|++|..++  ++|.+|..  +|+  .+.|+ .||+|+..-.
T Consensus       207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~  269 (557)
T PRK07843        207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFE  269 (557)
T ss_pred             cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence            33467788888888999999999999999865  56888765  443  57886 6999887654

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=94.57  E-value=0.1  Score=46.49  Aligned_cols=61  Identities=23%  Similarity=0.286  Sum_probs=44.5

Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC----eEEecCEEEEccChhhHHHhhhcc
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK----ETYSAGAVVLAVGISTLQELIKNS  228 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g----~~~~ad~VV~a~p~~~~~~l~~~~  228 (355)
                      |...++..+.+|++++.|++|..+++++++++|.+   ++    .++.++.||+|..+-...+|+-..
T Consensus       199 L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~S  266 (296)
T PF00732_consen  199 LPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRS  266 (296)
T ss_dssp             HHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHT
T ss_pred             cchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccc
Confidence            44444444899999999999988644467889876   23    356789999999998777776544

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK07190 hypothetical protein; Provisional

Probab=94.54  E-value=0.17  Score=48.68  Aligned_cols=59  Identities=12%  Similarity=0.128  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +-+.|.+.+++.|++|+.+++|++|++++++  +. +++ +|++++|+.||.|...... .+.+
T Consensus       111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~-v~~~~g~~v~a~~vVgADG~~S~vR~~l  171 (487)
T PRK07190        111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CL-TTLSNGERIQSRYVIGADGSRSFVRNHF  171 (487)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eE-EEECCCcEEEeCEEEECCCCCHHHHHHc
Confidence            4456667788889999999999999998753  53 444 6779999999999998764 4443

>PRK08401 L-aspartate oxidase; Provisional

Probab=94.52  E-value=0.22  Score=47.67  Aligned_cols=58  Identities=19%  Similarity=0.184  Sum_probs=46.9

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~  221 (355)
                      +..+.+.|.+.+++.|+++..+ .|+.|..++  +++.+|.++++.+.|+.||+|+.....
T Consensus       119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~~  176 (466)
T PRK08401        119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFSG  176 (466)
T ss_pred             hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCcC
Confidence            3347788988888899999875 899988755  567788888888999999999988653

>PRK06847 hypothetical protein; Provisional

Probab=94.51  E-value=0.15  Score=47.24  Aligned_cols=54  Identities=24%  Similarity=0.233  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+.+.|++|+++++|++|+.+++  .+ .|.+ +|++++||.||.|...+.
T Consensus       109 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~~-~v~~~~g~~~~ad~vI~AdG~~s  163 (375)
T PRK06847        109 LARILADAARAAGADVRLGTTVTAIEQDDD--GV-TVTFSDGTTGRYDLVVGADGLYS  163 (375)
T ss_pred             HHHHHHHHHHHhCCEEEeCCEEEEEEEcCC--EE-EEEEcCCCEEEcCEEEECcCCCc
Confidence            556777777778999999999999998764  24 4555 778899999999999875

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.41  E-value=0.22  Score=49.57  Aligned_cols=53  Identities=19%  Similarity=0.194  Sum_probs=42.4

Q ss_pred             HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +.|.+.+++.|++|+++++|++|..++  |+|.||.+    +|+  .+.|+.||+||....
T Consensus       174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g  232 (640)
T PRK07573        174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG  232 (640)
T ss_pred             HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence            556667778899999999999999865  57888865    343  578999999998744

>PRK12839 hypothetical protein; Provisional

Probab=94.28  E-value=0.18  Score=49.50  Aligned_cols=57  Identities=19%  Similarity=0.183  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe-EE-ecCEEEEccChhh
Q 018455          163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TY-SAGAVVLAVGIST  220 (355)
Q Consensus       163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~-~~-~ad~VV~a~p~~~  220 (355)
                      .+...|.+.+++.|++|+++++|++|..+++ |+|++|..   +|+ .+ .++.||+|+....
T Consensus       215 ~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~  276 (572)
T PRK12839        215 ALTGRLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFP  276 (572)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence            3677888888889999999999999987654 57888865   343 33 4589999998754

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.25  E-value=0.27  Score=48.38  Aligned_cols=64  Identities=20%  Similarity=0.265  Sum_probs=48.5

Q ss_pred             EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      ++..+.+..+.+.|.+.+.+.|++|..+++|++|..++  |+|.++..    +|+  .+.|+.||+|+....
T Consensus       128 ~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        128 YAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             ecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            33333344477888888888899999999999998765  56777753    343  589999999998854

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=94.24  E-value=0.26  Score=48.47  Aligned_cols=59  Identities=25%  Similarity=0.300  Sum_probs=46.3

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      .+..+...|.+.+.+.|++|..+++|++|..++  |+|.+|..    +|+  .+.|+.||+|+....
T Consensus       127 ~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~  191 (566)
T TIGR01812       127 TGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG  191 (566)
T ss_pred             CHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence            343366788888888899999999999999875  56777754    353  589999999998754

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=94.24  E-value=0.26  Score=48.81  Aligned_cols=59  Identities=24%  Similarity=0.245  Sum_probs=43.0

Q ss_pred             cchHHHHHHHHHHHH----cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 018455          160 LREKIFEPWMDSMRT----RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~----~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~  219 (355)
                      .+..+...|.+.+++    .|++|+++++|++|..+++ |+|.||..    +|+  .+.|+.||+||...
T Consensus       127 tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~AkaVVLATGG~  195 (603)
T TIGR01811       127 TGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSADAVILATGGY  195 (603)
T ss_pred             ChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            343355666655543    3799999999999998654 57888865    343  57899999999764

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.12  E-value=0.31  Score=48.14  Aligned_cols=61  Identities=13%  Similarity=0.145  Sum_probs=47.4

Q ss_pred             CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +.+..+...|.+.+.+.|++|+.+++|+++..+++ |+|.+|..    +|+  .+.|+.||+|+....
T Consensus       145 ~tG~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  211 (591)
T PRK07057        145 RTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAKTTLFATGGAG  211 (591)
T ss_pred             CChHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence            34444778888888888999999999999998654 56888864    343  578999999998754

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.10  E-value=0.31  Score=47.85  Aligned_cols=58  Identities=17%  Similarity=0.215  Sum_probs=46.2

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +..+...|.+.+.+.|++|..+++|++|..++  |+|.||..    +|+  .+.|+.||+|+....
T Consensus       135 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        135 GMALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            33366788888777899999999999999875  67888865    233  578999999998754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=94.09  E-value=0.23  Score=44.00  Aligned_cols=54  Identities=24%  Similarity=0.284  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++++++++|++|..+++  .+ .+.+  ++++++||.||.|+....
T Consensus        93 l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~-~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        93 FDEQLAERAQEAGAELRLGTTVLDVEIHDD--RV-VVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHHHHHHHHcCCEEEeCcEEeeEEEeCC--EE-EEEEcCccEEEEeCEEEECCCcch
Confidence            446677778888999999999999998774  24 2433  456899999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=94.06  E-value=0.28  Score=48.63  Aligned_cols=59  Identities=19%  Similarity=0.235  Sum_probs=46.2

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~  219 (355)
                      .+..+...|.+.+.+.|++|..+++|+++..+++ |+|.||..    +|+  .+.|+.||+||...
T Consensus       164 tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  228 (617)
T PTZ00139        164 TGHAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGY  228 (617)
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence            3344778888888889999999999999998444 67888864    353  57899999999664

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=94.02  E-value=0.23  Score=48.94  Aligned_cols=55  Identities=20%  Similarity=0.210  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--C-Ce-EEecC-EEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-KE-TYSAG-AVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~-g~-~~~ad-~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|..++  ++|++|.+  + ++ .+.++ .||+|+....
T Consensus       216 l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        216 LAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            66788888888999999999999999875  56878865  2 33 46785 7999998764

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=93.99  E-value=0.27  Score=45.35  Aligned_cols=52  Identities=27%  Similarity=0.293  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +...+.+.+++ .+.+| ....|++|..++  ++|.+|.+ +|+++.+|.||+|+.+
T Consensus        97 y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   97 YSRAMREKLESHPNLTI-IQGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHTSTTEEE-EES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHhcCCCeEE-EEcccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence            44566677776 45777 478999999988  67999988 6899999999999988

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=93.80  E-value=0.29  Score=45.77  Aligned_cols=54  Identities=20%  Similarity=0.273  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+.+.|++|+.+++|++|+.+++  .+ .|++ +|++++||.||.|...+.
T Consensus       113 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v-~v~~~~g~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        113 LINALRKRAEALGIDLREATSVTDFETRDE--GV-TVTLSDGSVLEARLLVAADGARS  167 (403)
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--EE-EEEECCCCEEEeCEEEEcCCCCh
Confidence            667788888888999999999999998764  25 4665 677899999999998764

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=93.76  E-value=0.24  Score=47.58  Aligned_cols=55  Identities=13%  Similarity=0.086  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEE---e-CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV---C-GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~---~-~g~--~~~ad~VV~a~p~~~  220 (355)
                      +.+++.+.+.+ .|++|+++++|+.|..+++ +.+ .|.   + +|+  +++||.||+|+.++.
T Consensus       186 L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS  247 (497)
T PRK13339        186 LTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGW-EVTVKDRNTGEKREQVADYVFIGAGGGA  247 (497)
T ss_pred             HHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCE-EEEEEecCCCceEEEEcCEEEECCCcch
Confidence            66778888754 5899999999999998733 223 343   3 342  689999999999987

>PRK06116 glutathione reductase; Validated

Probab=93.75  E-value=0.25  Score=47.06  Aligned_cols=53  Identities=15%  Similarity=0.255  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|.+|+.+++ +.+ .|.+ +|++++||.||+|+..
T Consensus       210 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~-~v~~~~g~~i~~D~Vv~a~G~  263 (450)
T PRK06116        210 IRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSL-TLTLEDGETLTVDCLIWAIGR  263 (450)
T ss_pred             HHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceE-EEEEcCCcEEEeCEEEEeeCC
Confidence            566788888899999999999999987654 334 3555 6788999999999854

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=93.75  E-value=0.35  Score=48.10  Aligned_cols=60  Identities=15%  Similarity=0.214  Sum_probs=47.1

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      .+..+...|.+.+.+.|++|..++.|++|..+++ |+|.+|..    +|+  .+.|+.||+||....
T Consensus       185 tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  250 (635)
T PLN00128        185 TGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYG  250 (635)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence            3444778888888788999999999999988744 57888864    353  678999999998754

>PRK07395 L-aspartate oxidase; Provisional

Probab=93.73  E-value=0.27  Score=48.07  Aligned_cols=60  Identities=17%  Similarity=0.162  Sum_probs=45.6

Q ss_pred             cchHHHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChh
Q 018455          160 LREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~  219 (355)
                      .+..+.+.|.+.+++ .|++|+++++|.+|..+++.|+|.||..  +|+  .+.|+.||+||...
T Consensus       132 ~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~  196 (553)
T PRK07395        132 TGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG  196 (553)
T ss_pred             ChHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence            334477888888765 4899999999999998642256888865  454  47899999999874

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=93.60  E-value=0.2  Score=46.18  Aligned_cols=51  Identities=18%  Similarity=0.127  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~  221 (355)
                      +...|.+.+.+. |++|+.+++|++|+.    +   .|.+++++++||+||+|+.++..
T Consensus       147 ~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~---~v~t~~g~i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       147 AIPALAAYLAEQHGVEFHWNTAVTSVET----G---TVRTSRGDVHADQVFVCPGADFE  198 (365)
T ss_pred             HHHHHHHHHHhcCCCEEEeCCeEEEEec----C---eEEeCCCcEEeCEEEECCCCChh
Confidence            556777777665 999999999999963    2   35665556789999999999753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07512 L-aspartate oxidase; Provisional

Probab=93.53  E-value=0.25  Score=47.93  Aligned_cols=59  Identities=22%  Similarity=0.339  Sum_probs=45.5

Q ss_pred             cchHHHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChhh
Q 018455          160 LREKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~~  220 (355)
                      .+..+.+.|.+.+.+. |++|+.+++|++|..++  |+|.+|.+  +++  ++.|+.||+|+....
T Consensus       134 ~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        134 AGAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence            3444778888887764 89999999999998765  56878765  333  689999999998753

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=93.50  E-value=0.27  Score=45.86  Aligned_cols=54  Identities=13%  Similarity=0.205  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+++|++|+.+++  .+ .|++ +|++++||.||.|...+.
T Consensus       115 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~--~v-~v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        115 LVDRLWAALHAAGVQLHCPARVVALEQDAD--RV-RLRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             HHHHHHHHHHhCCCEEEcCCeEEEEEecCC--eE-EEEECCCCEEEeCEEEEecCCCc
Confidence            567788888888999999999999998764  25 4665 577899999999998865

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=93.42  E-value=0.41  Score=38.25  Aligned_cols=41  Identities=32%  Similarity=0.340  Sum_probs=30.9

Q ss_pred             cCcEEE-cCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          175 RGCEFL-DGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       175 ~G~~i~-l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      .|++|+ ...+|+.|...+++  . .|.+ +|..+.||+||+|+..
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~--~-~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDG--Y-RVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCc--E-EEEECCCCEEEeCEEEECCCC
Confidence            455543 67899999998863  3 4544 7889999999999864

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=93.41  E-value=0.3  Score=45.72  Aligned_cols=60  Identities=13%  Similarity=0.192  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK  226 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~~  226 (355)
                      +.+.|.+.+++.|++|+.+++|.+|+.++++  + .|++ +|++++||.||.|...+. ..+++.
T Consensus       114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg  175 (405)
T PRK05714        114 VQDALLERLHDSDIGLLANARLEQMRRSGDD--W-LLTLADGRQLRAPLVVAADGANSAVRRLAG  175 (405)
T ss_pred             HHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--E-EEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence            5567777777789999999999999987753  4 4655 677899999999999875 455543

>TIGR00551 nadB L-aspartate oxidase

Probab=93.40  E-value=0.37  Score=46.44  Aligned_cols=57  Identities=21%  Similarity=0.315  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-C-C--eEEecCEEEEccChhh
Q 018455          162 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-G-K--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       162 ~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-g--~~~~ad~VV~a~p~~~  220 (355)
                      ..+.+.|.+.+++ .|++|+.++.|++|..++  +++.+|.+ + +  ..+.|+.||+|+....
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            3367788888877 689999999999998765  55777765 2 3  4689999999999865

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=93.40  E-value=0.43  Score=47.69  Aligned_cols=55  Identities=20%  Similarity=0.159  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +...|.+.+.+.|++|+.+++|++|..++  |+|.||.+    +|+  .+.|+.||+||....
T Consensus       160 l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g  220 (657)
T PRK08626        160 MLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG  220 (657)
T ss_pred             HHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            55678887888899999999999999865  56778754    353  468999999998754

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=93.39  E-value=0.36  Score=45.11  Aligned_cols=56  Identities=23%  Similarity=0.354  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+-|++.+++.|++++.+++|+.+..++++ .+.++..++.+++|+.||.|..+..
T Consensus        97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~a~~vI~AdG~~s  152 (396)
T COG0644          97 FDKWLAERAEEAGAELYPGTRVTGVIREDDG-VVVGVRAGDDEVRAKVVIDADGVNS  152 (396)
T ss_pred             hhHHHHHHHHHcCCEEEeceEEEEEEEeCCc-EEEEEEcCCEEEEcCEEEECCCcch
Confidence            4455777888899999999999999999863 3433334567999999999998764

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=93.38  E-value=0.32  Score=45.06  Aligned_cols=59  Identities=14%  Similarity=0.258  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+.|.+.+.+ .|++|+.+++|++|+.++++  + .|++ +|++++||.||.|...+. +.+.+
T Consensus       107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~-~v~~~~g~~~~ad~vV~AdG~~S~vr~~l  168 (382)
T TIGR01984       107 LGQALLSRLALLTNIQLYCPARYKEIIRNQDY--V-RVTLDNGQQLRAKLLIAADGANSKVRELL  168 (382)
T ss_pred             HHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--E-EEEECCCCEEEeeEEEEecCCChHHHHHc
Confidence            66778787777 49999999999999987743  5 4655 677899999999999875 34443

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=93.37  E-value=0.6  Score=42.33  Aligned_cols=99  Identities=15%  Similarity=0.138  Sum_probs=60.8

Q ss_pred             hhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCC---CcceEEecCCcchHHHHH
Q 018455           91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---NFDLVWCRGTLREKIFEP  167 (355)
Q Consensus        91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~---~~~~~~~~gg~~~~l~~~  167 (355)
                      +.+|+.|+.+|+.++.+...+ ..+|..+    ++-.. =-|+..+..++..++..-.+   -+.+..-+-..-+.++.+
T Consensus       159 E~L~~~tI~d~Fse~FF~sNF-W~yW~tm----FAFek-WhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlP  232 (587)
T COG4716         159 EKLDDLTIEDWFSEDFFKSNF-WYYWQTM----FAFEK-WHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLP  232 (587)
T ss_pred             HhcCCccHHHhhhHhhhhhhH-HHHHHHH----HhhhH-HHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHH
Confidence            468999999999987654433 2234333    22222 23566665555544311111   111222233333347899


Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCCC
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEERC  195 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~  195 (355)
                      |...|+++|+++.++++|+.|..+...|
T Consensus       233 li~yL~~H~Vdf~~~~~Vedi~v~~t~g  260 (587)
T COG4716         233 LITYLKSHGVDFTYDQKVEDIDVDDTPG  260 (587)
T ss_pred             HHHHHHHcCCceEeccEEeeeeeccCcc
Confidence            9999999999999999999999875434

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=93.35  E-value=0.33  Score=45.03  Aligned_cols=56  Identities=23%  Similarity=0.184  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH
Q 018455          164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ  222 (355)
Q Consensus       164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~  222 (355)
                      +...+++.+++.| ..+..+++|..++.+.   ++++|.+++.++.||+||+|+.++.-.
T Consensus       158 ~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~v~t~~g~i~a~~vv~a~G~~~~~  214 (387)
T COG0665         158 LTRALAAAAEELGVVIIEGGTPVTSLERDG---RVVGVETDGGTIEADKVVLAAGAWAGE  214 (387)
T ss_pred             HHHHHHHHHHhcCCeEEEccceEEEEEecC---cEEEEEeCCccEEeCEEEEcCchHHHH
Confidence            6678888888888 5777799999999862   256788876669999999999988644

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.26  E-value=0.32  Score=33.85  Aligned_cols=40  Identities=18%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC  202 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~  202 (355)
                      +..-+.+.+.+.+++.|++|++++.|.+|..+++ + +. |++
T Consensus        38 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~   77 (80)
T PF00070_consen   38 FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTL   77 (80)
T ss_dssp             SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEE
T ss_pred             cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEE
Confidence            3333567788889999999999999999999886 3 65 765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=93.25  E-value=0.35  Score=47.32  Aligned_cols=55  Identities=22%  Similarity=0.287  Sum_probs=41.1

Q ss_pred             HHHHHHHHHH---Hc-CcEEEcCceeeEEEecCCCCeEEEEEe----C--------------C-eEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMR---TR-GCEFLDGRRVTDFIYDEERCCISDVVC----G--------------K-ETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~---~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~----~--------------g-~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.++   +. |++|++++++++|..++  |+|++|..    +              + .++.|+.||+||..-.
T Consensus       150 ~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~  227 (549)
T PRK12834        150 VVEPFERRVREAAARGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG  227 (549)
T ss_pred             HHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence            5567766654   23 58999999999999864  67889874    1              1 2578999999998654

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=93.20  E-value=0.33  Score=46.98  Aligned_cols=54  Identities=24%  Similarity=0.120  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~  220 (355)
                      +...++..+.++|++|+.+++|++|..++  +. ++|++    +|  .++.|+.||.|+.++.
T Consensus       157 l~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        157 LVVLNARDAAERGAEILTRTRVVSARREN--GL-WHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            55566667778899999999999998765  32 35544    24  3789999999999976

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.12  E-value=0.35  Score=47.30  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=45.6

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +..+.+.|.+.+.+.|++|+++++|++|..+++ ++|.+|..    +|+  .+.|+.||+||....
T Consensus       133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            333667888888788999999999999998763 45777753    343  588999999998754

>PRK08275 putative oxidoreductase; Provisional

Probab=93.10  E-value=0.41  Score=46.92  Aligned_cols=56  Identities=16%  Similarity=0.183  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|..++.|++|..+++ |++.+|..    +|+  .+.|+.||+|+....
T Consensus       139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        139 IKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            667888888888999999999999998734 56777753    343  578999999998754

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=93.10  E-value=0.19  Score=48.84  Aligned_cols=94  Identities=13%  Similarity=0.100  Sum_probs=66.7

Q ss_pred             hhCCChhhccHHHHHHHHHHHHHhcCC-CcceEEecCC-c-chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEE
Q 018455          123 GLFAPAEQCSAAATLGILYFIILAHQK-NFDLVWCRGT-L-REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD  199 (355)
Q Consensus       123 ~~~~~~~~~Sa~~~~~~~~~~~~~~~~-~~~~~~~~gg-~-~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~  199 (355)
                      .++...+-+|-..+...+...  +-.+ -..+..|..| | ...++++|+..+++.|+.|.-+++|++|....++  ..+
T Consensus       147 a~g~e~~lLsPee~~~~~pLL--n~d~v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~--~~g  222 (856)
T KOG2844|consen  147 AHGVESELLSPEETQELFPLL--NVDDVYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDK--FGG  222 (856)
T ss_pred             hccceeeecCHHHHHHhCccc--chhHheeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC--ccc
Confidence            566677777776665544431  1111 0112335433 3 2338899999999999999999999999998753  558


Q ss_pred             EEeCCeEEecCEEEEccChhh
Q 018455          200 VVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       200 v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      |.+.-+.+++.+||-|+..|.
T Consensus       223 VeT~~G~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  223 VETPHGSIETECVVNAAGVWA  243 (856)
T ss_pred             eeccCcceecceEEechhHHH
Confidence            988767899999999999987

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=93.09  E-value=0.21  Score=50.04  Aligned_cols=64  Identities=16%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             EEecCCc--chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhH
Q 018455          154 VWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  221 (355)
Q Consensus       154 ~~~~gg~--~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-g~~~~ad~VV~a~p~~~~  221 (355)
                      .++.+|.  ...+.+.+.+.+++ |++|+.+++|++|..+++  .+ .|.++ |..+.||.||+|+.++..
T Consensus       398 ~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~--~~-~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        398 FYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDD--GW-QLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             EeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCC--EE-EEEECCCcEEECCEEEECCCCCcc
Confidence            4455553  12266778888877 999999999999998763  34 47664 556789999999998753

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.07  E-value=0.51  Score=46.58  Aligned_cols=61  Identities=28%  Similarity=0.340  Sum_probs=46.9

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCC--CCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~--~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      .+..+.+.|.+.+.+.|++|..++.|++|..+++  +|+|.||..    +|+  .+.|+.||+|+....
T Consensus       138 tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        138 TGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            3444778888888888999999999999987652  145778754    344  578999999998754

>PRK06184 hypothetical protein; Provisional

Probab=93.06  E-value=0.46  Score=45.96  Aligned_cols=59  Identities=19%  Similarity=0.183  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCeEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +-+.|.+.+.+.|++|+++++|++|++++++  ++ +++    ++++++||.||.|...+.. .+.+
T Consensus       111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~--v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~l  174 (502)
T PRK06184        111 TERILRERLAELGHRVEFGCELVGFEQDADG--VT-ARVAGPAGEETVRARYLVGADGGRSFVRKAL  174 (502)
T ss_pred             HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc--EE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhC
Confidence            4456777787889999999999999988753  53 433    3568999999999998864 4444

>PRK06834 hypothetical protein; Provisional

Probab=93.00  E-value=0.36  Score=46.47  Aligned_cols=59  Identities=25%  Similarity=0.254  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +.+.|.+.+++.|++|+.+++|++|+.++++  + .|++ +|++++||.||.|...+.. .+.+
T Consensus       102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v-~v~~~~g~~i~a~~vVgADG~~S~vR~~l  162 (488)
T PRK06834        102 IERILAEWVGELGVPIYRGREVTGFAQDDTG--V-DVELSDGRTLRAQYLVGCDGGRSLVRKAA  162 (488)
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--E-EEEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence            5566777788889999999999999998753  5 4655 5678999999999988753 4443

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=92.96  E-value=0.41  Score=45.45  Aligned_cols=53  Identities=26%  Similarity=0.379  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|.+|..+   +++..+.++++++.||.||+|++..
T Consensus       193 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~~~~~i~~d~vi~a~G~~  245 (444)
T PRK09564        193 ITDVMEEELRENGVELHLNEFVKSLIGE---DKVEGVVTDKGEYEADVVIVATGVK  245 (444)
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEecC---CcEEEEEeCCCEEEcCEEEECcCCC
Confidence            5567777888899999999999999643   2355566677789999999998864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=92.70  E-value=0.48  Score=44.97  Aligned_cols=53  Identities=26%  Similarity=0.247  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++++++++|++|..++  +.+ .+..+|+++++|.||+|+...
T Consensus       200 ~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v-~v~~~g~~i~~D~viva~G~~  252 (438)
T PRK07251        200 VAALAKQYMEEDGITFLLNAHTTEVKNDG--DQV-LVVTEDETYRFDALLYATGRK  252 (438)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEE-EEEECCeEEEcCEEEEeeCCC
Confidence            55566677888999999999999998754  334 355577899999999987543

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=92.69  E-value=0.35  Score=44.86  Aligned_cols=52  Identities=29%  Similarity=0.303  Sum_probs=40.6

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe-EEecCEEEEccChh
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE-TYSAGAVVLAVGIS  219 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~-~~~ad~VV~a~p~~  219 (355)
                      ...+.+...+.|+++|++|+++++|++|+.+       +|++ +|+ ++.++.||-|+...
T Consensus       208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~~I~~~tvvWaaGv~  261 (405)
T COG1252         208 PPKLSKYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEEEIPADTVVWAAGVR  261 (405)
T ss_pred             CHHHHHHHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCeeEecCEEEEcCCCc
Confidence            3336677778899999999999999999854       2444 455 69999999998754

>PRK07045 putative monooxygenase; Reviewed

Probab=92.68  E-value=0.55  Score=43.69  Aligned_cols=59  Identities=10%  Similarity=0.128  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHH
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQE  223 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~  223 (355)
                      +.+.|.+.+.. .|++|+++++|+.|+.+++ +.++.|++ +|+++++|.||.|..... ..+
T Consensus       108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~  169 (388)
T PRK07045        108 LRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGARSMIRD  169 (388)
T ss_pred             HHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence            44566666654 5789999999999998765 33445666 678999999999999875 345

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=92.64  E-value=0.31  Score=45.46  Aligned_cols=58  Identities=24%  Similarity=0.309  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455          163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~  221 (355)
                      .+.+.+...++++|+++++++.+.+++-+.+ |++..|.+ +|.+++||.||+-+...-.
T Consensus       256 ~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~  314 (478)
T KOG1336|consen  256 SIGQFYEDYYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPN  314 (478)
T ss_pred             HHHHHHHHHHHhcCeEEEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeeccccc
Confidence            3667788889999999999999999998877 67777777 7899999999997766543

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=92.60  E-value=0.55  Score=45.57  Aligned_cols=55  Identities=15%  Similarity=0.260  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecC-EEEEccChhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VV~a~p~~~  220 (355)
                      +...+.+.+.+ .|++|+++++|++|..++  ++|.+|..  +|+  .+.|+ .||+|+....
T Consensus       175 l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~  235 (513)
T PRK12837        175 LIGRFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGFE  235 (513)
T ss_pred             HHHHHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence            55667666655 489999999999999875  67888865  443  57886 7999998753

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=92.46  E-value=0.47  Score=45.03  Aligned_cols=52  Identities=17%  Similarity=0.249  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|.+|..++  +.+ .+..+++++.+|.||+|+..
T Consensus       201 ~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v-~v~~~~g~i~~D~vl~a~G~  252 (441)
T PRK08010        201 IADNIATILRDQGVDIILNAHVERISHHE--NQV-QVHSEHAQLAVDALLIASGR  252 (441)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEEcCCeEEeCEEEEeecC
Confidence            56778888889999999999999998765  334 45555556899999999754

>PRK14694 putative mercuric reductase; Provisional

Probab=92.44  E-value=0.51  Score=45.22  Aligned_cols=53  Identities=19%  Similarity=0.234  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|++++.|.+|+.++  +.+ .+.++++++++|.||+|+...
T Consensus       220 ~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~  272 (468)
T PRK14694        220 VGEAIEAAFRREGIEVLKQTQASEVDYNG--REF-ILETNAGTLRAEQLLVATGRT  272 (468)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEECCCEEEeCEEEEccCCC
Confidence            56778888889999999999999998765  323 455666679999999988643

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.41  E-value=0.56  Score=44.85  Aligned_cols=53  Identities=23%  Similarity=0.298  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC---eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g---~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|+.+++  .+ .+.+ +|   +++++|.||+|+...
T Consensus       215 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~v-~v~~~~gg~~~~i~~D~vi~a~G~~  271 (462)
T PRK06416        215 ISKLAERALKKRGIKIKTGAKAKKVEQTDD--GV-TVTLEDGGKEETLEADYVLVAVGRR  271 (462)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEEeCC--EE-EEEEEeCCeeEEEEeCEEEEeeCCc
Confidence            566777888899999999999999987653  24 3544 44   679999999997654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=92.39  E-value=0.53  Score=45.31  Aligned_cols=53  Identities=13%  Similarity=0.277  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|++++.|++|..+++ + ...|.+ +|+++++|.||+|+..
T Consensus       233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~-~~~v~~~~g~~i~~D~vl~a~G~  286 (486)
T TIGR01423       233 LRKELTKQLRANGINIMTNENPAKVTLNAD-G-SKHVTFESGKTLDVDVVMMAIGR  286 (486)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-c-eEEEEEcCCCEEEcCEEEEeeCC
Confidence            667888889999999999999999987654 2 224555 6778999999998864

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.33  E-value=0.64  Score=44.96  Aligned_cols=54  Identities=20%  Similarity=0.091  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC----eEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK----ETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g----~~~~ad~VV~a~p~~~  220 (355)
                      +...++..++++|++|+.+++|++|..++  + .++|++ ++    .++.|+.||.|+.++.
T Consensus       157 l~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        157 LVVLNALDAAERGATILTRTRCVSARREG--G-LWRVETRDADGETRTVRARALVNAAGPWV  215 (502)
T ss_pred             HHHHHHHHHHHCCCEEecCcEEEEEEEcC--C-EEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence            45566677788999999999999999875  3 235655 32    3689999999999975

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=92.30  E-value=0.47  Score=45.34  Aligned_cols=53  Identities=15%  Similarity=0.164  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++  .+ .+++ +|+++++|.||+|+...
T Consensus       218 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~--~~-~v~~~~g~~i~~D~vi~a~G~~  271 (461)
T PRK05249        218 ISDALSYHLRDSGVTIRHNEEVEKVEGGDD--GV-IVHLKSGKKIKADCLLYANGRT  271 (461)
T ss_pred             HHHHHHHHHHHcCCEEEECCEEEEEEEeCC--eE-EEEECCCCEEEeCEEEEeecCC
Confidence            567788888889999999999999987653  24 3555 57789999999998754

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=92.16  E-value=0.65  Score=43.08  Aligned_cols=54  Identities=13%  Similarity=0.192  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++.|++|+++++|.+|..+++  .+ .|.+ +|++++||.||+|+....
T Consensus       185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~~~g~~i~~D~vI~a~G~~p  239 (377)
T PRK04965        185 VSSRLQHRLTEMGVHLLLKSQLQGLEKTDS--GI-RATLDSGRSIEVDAVIAAAGLRP  239 (377)
T ss_pred             HHHHHHHHHHhCCCEEEECCeEEEEEccCC--EE-EEEEcCCcEEECCEEEECcCCCc
Confidence            455677778889999999999999987653  23 4555 678999999999987643

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=92.06  E-value=0.56  Score=48.28  Aligned_cols=56  Identities=9%  Similarity=0.106  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      ..+.+.+.++++|++|++++.|.+|..+++ +.+..|.+ +|+++++|.||+|++..-
T Consensus       189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rP  245 (847)
T PRK14989        189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRP  245 (847)
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCccc
Confidence            445677888899999999999999986543 22335555 788999999999997643

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=92.00  E-value=0.75  Score=43.85  Aligned_cols=55  Identities=25%  Similarity=0.263  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+-|.+.+++.|++++.++ |.++..+++ |.+.+|++ +|++++||.||=|+....
T Consensus       156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  156 FDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             HHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccc
Confidence            55668888888999998875 888888876 67878888 688999999999998754

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK14727 putative mercuric reductase; Provisional

Probab=91.98  E-value=0.56  Score=45.08  Aligned_cols=54  Identities=15%  Similarity=0.232  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++  .+ .+..+++++.+|.||+|++...
T Consensus       230 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~--~~-~v~~~~g~i~aD~VlvA~G~~p  283 (479)
T PRK14727        230 LGETLTACFEKEGIEVLNNTQASLVEHDDN--GF-VLTTGHGELRAEKLLISTGRHA  283 (479)
T ss_pred             HHHHHHHHHHhCCCEEEcCcEEEEEEEeCC--EE-EEEEcCCeEEeCEEEEccCCCC
Confidence            556677888889999999999999987653  23 4555556799999999998653

>PLN02697 lycopene epsilon cyclase

Probab=91.89  E-value=0.66  Score=44.99  Aligned_cols=54  Identities=13%  Similarity=0.249  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+.+.|+++ ++++|++|..++++  +..+++ +|++++|+.||.|+.++.
T Consensus       194 L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~--~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        194 LHEELLRRCVESGVSY-LSSKVDRITEASDG--LRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc--EEEEEEcCCcEEECCEEEECCCcCh
Confidence            5567777777789998 88999999887643  433444 678899999999999987

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=91.82  E-value=0.61  Score=44.36  Aligned_cols=53  Identities=21%  Similarity=0.241  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++++++++|.+|..++++  + .|.+ +|+++++|.||+|++..
T Consensus       209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~-~v~~~~g~~i~~D~viva~G~~  262 (446)
T TIGR01424       209 MRALLARNMEGRGIRIHPQTSLTSITKTDDG--L-KVTLSHGEEIVADVVLFATGRS  262 (446)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--E-EEEEcCCcEeecCEEEEeeCCC
Confidence            5566777788899999999999999876542  3 3544 67789999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=91.76  E-value=0.79  Score=43.78  Aligned_cols=53  Identities=21%  Similarity=0.347  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|.+|+.+++  .+. +.+ +|  +++.+|.||+|+...
T Consensus       213 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~--~v~-v~~~~g~~~~i~~D~vi~a~G~~  268 (461)
T TIGR01350       213 VSKVVAKALKKKGVKILTNTKVTAVEKNDD--QVV-YENKGGETETLTGEKVLVAVGRK  268 (461)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEEeCC--EEE-EEEeCCcEEEEEeCEEEEecCCc
Confidence            566777888889999999999999987663  353 544 45  479999999998653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07804 L-aspartate oxidase; Provisional

Probab=91.72  E-value=0.6  Score=45.62  Aligned_cols=58  Identities=19%  Similarity=0.178  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-------CC--eEEecCEEEEccChhh
Q 018455          162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------GK--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------~g--~~~~ad~VV~a~p~~~  220 (355)
                      ..+.+.|.+.+++.|++|+.+++|.+|..+++ |+|.+|.+       ++  ..+.|+.||+|+....
T Consensus       144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~  210 (541)
T PRK07804        144 AEVQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG  210 (541)
T ss_pred             HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence            33778888888888999999999999998754 46777754       12  3688999999998754

>PLN02507 glutathione reductase

Probab=91.69  E-value=0.68  Score=44.76  Aligned_cols=52  Identities=21%  Similarity=0.282  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|++++.|++|+.+++  .+ .|.+ +|+++++|.||++++.
T Consensus       246 ~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~--~~-~v~~~~g~~i~~D~vl~a~G~  298 (499)
T PLN02507        246 MRAVVARNLEGRGINLHPRTNLTQLTKTEG--GI-KVITDHGEEFVADVVLFATGR  298 (499)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEeCC--eE-EEEECCCcEEEcCEEEEeecC
Confidence            556677788889999999999999987653  24 3555 5678999999999764

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=91.69  E-value=11  Score=34.89  Aligned_cols=54  Identities=26%  Similarity=0.181  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~  221 (355)
                      +-+.+.+.++ .++.+++++.|++|+.++++  + .|++ +|++++|+.||-|.++...
T Consensus        89 f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~--~-~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   89 FYEFLLERAA-AGGVIRLNARVTSIEETGDG--V-LVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             HHHHHHHHhh-hCCeEEEccEEEEEEecCce--E-EEEECCCCEEEeeEEEECCCcccc
Confidence            4455666666 56688999999999988742  3 3555 6789999999999986543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=91.66  E-value=0.72  Score=42.68  Aligned_cols=54  Identities=13%  Similarity=0.187  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+.+.| ++|+.+++|++|..+++  .+ .|++ +|+++++|.||.|...+.
T Consensus       108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~--~~-~v~~~~g~~~~~~~vi~adG~~S  163 (385)
T TIGR01988       108 LQQALWERLQEYPNVTLLCPARVVELPRHSD--HV-ELTLDDGQQLRARLLVGADGANS  163 (385)
T ss_pred             HHHHHHHHHHhCCCcEEecCCeEEEEEecCC--ee-EEEECCCCEEEeeEEEEeCCCCC
Confidence            5567778777777 99999999999998764  35 4655 677899999999988764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08163 salicylate hydroxylase; Provisional

Probab=91.65  E-value=0.74  Score=42.90  Aligned_cols=55  Identities=15%  Similarity=0.259  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~  221 (355)
                      +.+.|.+.+.+.| ++|+.+++|++|..++++  + .|++ +|++++||.||.|...+..
T Consensus       111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v-~v~~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--V-TVFDQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--e-EEEEcCCCEEecCEEEECCCcChH
Confidence            4556777776654 899999999999987642  5 3555 6778999999999988754

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=91.55  E-value=0.71  Score=44.21  Aligned_cols=52  Identities=19%  Similarity=0.203  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|.+|+.+++  .+ .|.+ +|+++++|.||+|+..
T Consensus       220 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~--~~-~v~~~~g~~l~~D~vl~a~G~  272 (466)
T PRK07845        220 AAEVLEEVFARRGMTVLKRSRAESVERTGD--GV-VVTLTDGRTVEGSHALMAVGS  272 (466)
T ss_pred             HHHHHHHHHHHCCcEEEcCCEEEEEEEeCC--EE-EEEECCCcEEEecEEEEeecC
Confidence            556677888889999999999999987653  24 3554 6788999999998764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.50  E-value=1.1  Score=44.62  Aligned_cols=57  Identities=19%  Similarity=0.239  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHHHc--------C-----cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 018455          161 REKIFEPWMDSMRTR--------G-----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~--------G-----~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~  219 (355)
                      +..+.+.|.+.+++.        |     ++|..+++|.+|..++  |+|.+|..    +|+  .+.|+.||+|+...
T Consensus       137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~  212 (626)
T PRK07803        137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAPAVVLATGGI  212 (626)
T ss_pred             HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcCeEEECCCcc
Confidence            333677888877666        6     8999999999999765  56777753    343  57999999999873

>PRK09897 hypothetical protein; Provisional

Probab=91.41  E-value=0.71  Score=44.80  Aligned_cols=50  Identities=16%  Similarity=0.181  Sum_probs=37.2

Q ss_pred             HHHHHHHHHcC--cEEEcCceeeEEEecCCCCeEEEEEe-C-CeEEecCEEEEccCh
Q 018455          166 EPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGI  218 (355)
Q Consensus       166 ~~l~~~l~~~G--~~i~l~~~V~~I~~~~~~~~v~~v~~-~-g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+.|  ++|+.+++|++|..++++  + .|++ + |+++.||.||+|+..
T Consensus       111 ~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~-~V~t~~gg~~i~aD~VVLAtGh  164 (534)
T PRK09897        111 LRLVDQARQQKFAVAVYESCQVTDLQITNAG--V-MLATNQDLPSETFDLAVIATGH  164 (534)
T ss_pred             HHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--E-EEEECCCCeEEEcCEEEECCCC
Confidence            34445555666  688899999999987742  4 4665 4 468999999999985

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.41  E-value=1.1  Score=44.26  Aligned_cols=59  Identities=20%  Similarity=0.213  Sum_probs=45.0

Q ss_pred             cchHHHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          160 LREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      .+..+.+.|.+.+.+ .|++|+.++.|.+|..++  +++.+|..    +|+  .+.|+.||+|+....
T Consensus       135 tG~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        135 TGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             chHHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence            334366788887765 689999999999998865  56777753    354  578999999998763

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=91.32  E-value=0.87  Score=45.16  Aligned_cols=55  Identities=20%  Similarity=0.226  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +...|.+.+++.| ++|+.+++|.+|..++  ++|.+|..    +|+  ++.|+.||+|+....
T Consensus       134 ~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (608)
T PRK06854        134 YKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA  195 (608)
T ss_pred             HHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence            5566777777665 9999999999998765  56777742    343  689999999999754

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=91.31  E-value=0.96  Score=42.28  Aligned_cols=53  Identities=17%  Similarity=0.274  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++.|++|+++++|++|.. +  +.+ .|.+ +|+++.||.||+++....
T Consensus       188 ~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~-~v~l~~g~~i~aD~Vv~a~G~~p  241 (396)
T PRK09754        188 VQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKV-ELTLQSGETLQADVVIYGIGISA  241 (396)
T ss_pred             HHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEE-EEEECCCCEEECCEEEECCCCCh
Confidence            445567777889999999999999976 3  224 4555 678899999999987643

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=91.27  E-value=0.9  Score=43.29  Aligned_cols=54  Identities=11%  Similarity=0.070  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC-eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g-~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|+++++++.|++|..+++ +.+ .|.+ +| +++++|.||+++...
T Consensus       209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~~i~~D~vi~a~G~~  264 (450)
T TIGR01421       209 ISETITEEYEKEGINVHKLSKPVKVEKTVE-GKL-VIHFEDGKSIDDVDELIWAIGRK  264 (450)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceE-EEEECCCcEEEEcCEEEEeeCCC
Confidence            566777888889999999999999987543 323 4555 56 579999999998754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01810 betA choline dehydrogenase

Probab=91.25  E-value=0.45  Score=46.39  Aligned_cols=51  Identities=20%  Similarity=0.229  Sum_probs=39.3

Q ss_pred             HHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe---EEecCEEEEccChhhHHHhh
Q 018455          173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE---TYSAGAVVLAVGISTLQELI  225 (355)
Q Consensus       173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~---~~~ad~VV~a~p~~~~~~l~  225 (355)
                      ++.+.+|++++.|++|..++  +++++|.+  +++   .+.++.||+|..+-...+|+
T Consensus       205 ~r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL  260 (532)
T TIGR01810       205 KRPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL  260 (532)
T ss_pred             cCCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence            35579999999999999975  67888876  332   35789999999986555554

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=91.11  E-value=0.86  Score=42.41  Aligned_cols=59  Identities=10%  Similarity=0.129  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +.+.|.+.+++. |++|+.+++|+++..++++  + .|.+ +|++++||.||.|...+.. .+.+
T Consensus       114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~-~v~~~~g~~~~a~~vI~AdG~~S~vR~~~  175 (391)
T PRK08020        114 LQLALWQALEAHPNVTLRCPASLQALQRDDDG--W-ELTLADGEEIQAKLVIGADGANSQVRQMA  175 (391)
T ss_pred             HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--E-EEEECCCCEEEeCEEEEeCCCCchhHHHc
Confidence            445677766665 8999999999999887642  4 4665 6778999999999998753 4443

>TIGR02462 pyranose_ox pyranose oxidase

Probab=91.10  E-value=0.75  Score=44.70  Aligned_cols=52  Identities=19%  Similarity=0.305  Sum_probs=39.4

Q ss_pred             HcCcEEEcCceeeEEEecCCC-CeEEEEEe----CCe--EEecCEEEEccChhhHHHhh
Q 018455          174 TRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGISTLQELI  225 (355)
Q Consensus       174 ~~G~~i~l~~~V~~I~~~~~~-~~v~~v~~----~g~--~~~ad~VV~a~p~~~~~~l~  225 (355)
                      ....+|++++.|++|+.++++ ++|.+|..    +|+  +++|+.||+|+.+-...+|+
T Consensus       226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL  284 (544)
T TIGR02462       226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL  284 (544)
T ss_pred             CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence            334899999999999987653 46777744    243  58999999999887766665

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK13748 putative mercuric reductase; Provisional

Probab=90.90  E-value=0.86  Score=44.75  Aligned_cols=53  Identities=19%  Similarity=0.244  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|+.++  +.+ .+.++++++++|.||+|+...
T Consensus       312 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~  364 (561)
T PRK13748        312 IGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEF-VLTTGHGELRADKLLVATGRA  364 (561)
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE-EEEecCCeEEeCEEEEccCCC
Confidence            55677788888999999999999998765  324 355555579999999998753

>PRK07588 hypothetical protein; Provisional

Probab=90.85  E-value=0.65  Score=43.25  Aligned_cols=57  Identities=11%  Similarity=0.090  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QEL  224 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l  224 (355)
                      +.+.|.+.+. .|++|+++++|++|+.++++  + .|++ +|+++++|.||.|...+.. .+.
T Consensus       105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~--v-~v~~~~g~~~~~d~vIgADG~~S~vR~~  163 (391)
T PRK07588        105 LAAAIYTAID-GQVETIFDDSIATIDEHRDG--V-RVTFERGTPRDFDLVIGADGLHSHVRRL  163 (391)
T ss_pred             HHHHHHHhhh-cCeEEEeCCEEeEEEECCCe--E-EEEECCCCEEEeCEEEECCCCCccchhh
Confidence            4444555443 37899999999999987742  5 3555 6788999999999988753 443

>PRK08071 L-aspartate oxidase; Provisional

Probab=90.82  E-value=0.53  Score=45.64  Aligned_cols=54  Identities=22%  Similarity=0.273  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+. .|++|+.+++|.+|..++  +++.+|.+   +|+  .+.|+.||+|+....
T Consensus       132 i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~  190 (510)
T PRK08071        132 LLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCG  190 (510)
T ss_pred             HHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence            6677777665 589999999999998765  56777765   233  678999999998754

>PLN02815 L-aspartate oxidase

Probab=90.75  E-value=1.2  Score=43.93  Aligned_cols=57  Identities=12%  Similarity=0.218  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCC--eEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC--CISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~--~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +...|.+.+.+. |++|..+++|++|..+++++  +|.||..    +|+  .+.|+.||+||....
T Consensus       157 i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  222 (594)
T PLN02815        157 IERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG  222 (594)
T ss_pred             HHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence            667787777654 89999999999999865433  3778764    343  568999999998653

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=90.64  E-value=1  Score=39.96  Aligned_cols=52  Identities=23%  Similarity=0.323  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|+++++ +.|.+|..+++  .. .|.+ +++++++|.||+|+...
T Consensus        59 ~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~--~~-~v~~~~~~~~~~d~liiAtG~~  111 (300)
T TIGR01292        59 LMEKMKEQAVKFGAEIIY-EEVIKVDLSDR--PF-KVKTGDGKEYTAKAVIIATGAS  111 (300)
T ss_pred             HHHHHHHHHHHcCCeEEE-EEEEEEEecCC--ee-EEEeCCCCEEEeCEEEECCCCC
Confidence            556777778888999999 89999988653  23 4655 56789999999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=90.56  E-value=0.95  Score=41.08  Aligned_cols=61  Identities=25%  Similarity=0.296  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChhh-HHHhhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST-LQELIK  226 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~~~-~~~l~~  226 (355)
                      +.+.|.+.+++.|++|+.+++|..++.++++  +..+..   +|  ++++||.||-|-..+. +.+.+.
T Consensus       113 l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~--~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~  179 (356)
T PF01494_consen  113 LDRALREEAEERGVDIRFGTRVVSIEQDDDG--VTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG  179 (356)
T ss_dssp             HHHHHHHHHHHHTEEEEESEEEEEEEEETTE--EEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred             HHHhhhhhhhhhhhhheeeeecccccccccc--cccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence            5567888888889999999999999988753  433332   24  3789999999999886 444443

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=90.36  E-value=1.3  Score=42.31  Aligned_cols=52  Identities=17%  Similarity=0.287  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|++|..++  +.+ .+.+   +|  +++++|.||+|+..
T Consensus       215 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~~~g~~~~i~~D~vi~a~G~  271 (466)
T PRK07818        215 VSKEIAKQYKKLGVKILTGTKVESIDDNG--SKV-TVTVSKKDGKAQELEADKVLQAIGF  271 (466)
T ss_pred             HHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeE-EEEEEecCCCeEEEEeCEEEECcCc
Confidence            55678888889999999999999998654  323 3332   45  47999999999864

>PRK06370 mercuric reductase; Validated

Probab=90.33  E-value=1.3  Score=42.43  Aligned_cols=55  Identities=13%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C-CeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|.+|..+++ +....+.. + ++++++|.||+|+...
T Consensus       214 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~Vi~A~G~~  270 (463)
T PRK06370        214 VAAAVREILEREGIDVRLNAECIRVERDGD-GIAVGLDCNGGAPEITGSHILVAVGRV  270 (463)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEECcCCC
Confidence            556677788889999999999999987653 21112222 2 4579999999998743

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=90.32  E-value=1.1  Score=43.59  Aligned_cols=53  Identities=13%  Similarity=0.218  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|.+++++++|.+|..+++   .+.|.+ +|+++.||.||+|+...
T Consensus       268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~---~~~V~~~~g~~i~a~~vViAtG~~  321 (517)
T PRK15317        268 LAAALEEHVKEYDVDIMNLQRASKLEPAAG---LIEVELANGAVLKAKTVILATGAR  321 (517)
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEecCC---eEEEEECCCCEEEcCEEEECCCCC
Confidence            667788888888999999999999998753   234655 56789999999999974

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=90.31  E-value=1.1  Score=43.65  Aligned_cols=53  Identities=15%  Similarity=0.265  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++++++++|.+|..+++  .. .|.+ +|+++.+|.+|+|+...
T Consensus       269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~--~~-~v~~~~g~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       269 LAANLEEHIKQYPIDLMENQRAKKIETEDG--LI-VVTLESGEVLKAKSVIVATGAR  322 (515)
T ss_pred             HHHHHHHHHHHhCCeEEcCCEEEEEEecCC--eE-EEEECCCCEEEeCEEEECCCCC
Confidence            556777778888999999999999987653  23 4655 56789999999999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=90.24  E-value=0.95  Score=46.39  Aligned_cols=53  Identities=15%  Similarity=0.213  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      ..+.+.+.++++|++|++++.|++|..++   ++.+|++ +|+++++|.||+|++..
T Consensus       184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~---~~~~v~~~dG~~i~~D~Vi~a~G~~  237 (785)
T TIGR02374       184 AGRLLQRELEQKGLTFLLEKDTVEIVGAT---KADRIRFKDGSSLEADLIVMAAGIR  237 (785)
T ss_pred             HHHHHHHHHHHcCCEEEeCCceEEEEcCC---ceEEEEECCCCEEEcCEEEECCCCC
Confidence            34556777889999999999999997543   2456766 68899999999999854

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=90.19  E-value=0.39  Score=44.06  Aligned_cols=67  Identities=16%  Similarity=0.153  Sum_probs=49.8

Q ss_pred             cCCcchHHHHHHH----HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhh
Q 018455          157 RGTLREKIFEPWM----DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIK  226 (355)
Q Consensus       157 ~gg~~~~l~~~l~----~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~  226 (355)
                      ++.|..++++-|.    +.+++.|++|+-|..|.++.....  ++ .+.+ ||.+++.|.||+|+.-.--..|..
T Consensus       384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~--nl-~lkL~dG~~l~tD~vVvavG~ePN~ela~  455 (659)
T KOG1346|consen  384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK--NL-VLKLSDGSELRTDLVVVAVGEEPNSELAE  455 (659)
T ss_pred             cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc--ce-EEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence            5778777766655    446678999999999999998873  35 3666 789999999999987543334433

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=90.12  E-value=1.4  Score=42.18  Aligned_cols=53  Identities=13%  Similarity=0.125  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCC--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|++++.|++|+.++  +.+ .+..+|  +++++|.||+|+...
T Consensus       213 ~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v-~~~~~g~~~~i~~D~vivA~G~~  267 (458)
T PRK06912        213 IAHILREKLENDGVKIFTGAALKGLNSYK--KQA-LFEYEGSIQEVNAEFVLVSVGRK  267 (458)
T ss_pred             HHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEE-EEEECCceEEEEeCEEEEecCCc
Confidence            55677788888999999999999998654  223 344454  378999999998754

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=90.04  E-value=1  Score=42.46  Aligned_cols=53  Identities=19%  Similarity=0.253  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++.|+++++++.|.+|..++   .+ .+..+|+++++|.||+|++...
T Consensus       181 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~---~~-v~~~~g~~i~~D~vi~a~G~~p  233 (427)
T TIGR03385       181 MNQIVEEELKKHEINLRLNEEVDSIEGEE---RV-KVFTSGGVYQADMVILATGIKP  233 (427)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEecCC---CE-EEEcCCCEEEeCEEEECCCccC
Confidence            55667778888999999999999997543   23 2334788999999999988653

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=89.99  E-value=1.2  Score=41.32  Aligned_cols=53  Identities=17%  Similarity=0.169  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.| ++++ +++|++|+.++++  + .|++ +|++++||.||.|...+.
T Consensus       113 l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~-~v~~~~g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        113 IERALWAALRFQPNLTWF-PARAQGLEVDPDA--A-TLTLADGQVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--E-EEEECCCCEEEeeEEEEeCCCCc
Confidence            5677888888777 8898 9999999877642  4 4666 567899999999999864

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=89.94  E-value=1.4  Score=42.34  Aligned_cols=53  Identities=9%  Similarity=0.229  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C--C--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|.+|+++++|++|..+++  .+ .+.+ +  |  +++++|.||+|+...
T Consensus       226 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~--~v-~v~~~~~~g~~~~i~~D~vl~a~G~~  283 (475)
T PRK06327        226 VAKEAAKAFTKQGLDIHLGVKIGEIKTGGK--GV-SVAYTDADGEAQTLEVDKLIVSIGRV  283 (475)
T ss_pred             HHHHHHHHHHHcCcEEEeCcEEEEEEEcCC--EE-EEEEEeCCCceeEEEcCEEEEccCCc
Confidence            556777888889999999999999987653  24 3443 3  3  478999999998643

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=89.88  E-value=1.5  Score=40.77  Aligned_cols=60  Identities=18%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe--CCeEEecCEEEEccChhhH-HHhhh
Q 018455          164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGISTL-QELIK  226 (355)
Q Consensus       164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~ad~VV~a~p~~~~-~~l~~  226 (355)
                      +.+.|.+.+.+.+ ++++.+++|+.++.++++  +. +++  +|++++||.||-|-..+.. .+.+.
T Consensus       106 l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~--v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~  169 (387)
T COG0654         106 LLNALLEAARALPNVTLRFGAEVEAVEQDGDG--VT-VTLSFDGETLDADLLVGADGANSAVRRAAG  169 (387)
T ss_pred             HHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc--eE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence            5677888887766 899999999999999853  64 544  6789999999999998754 55555

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=89.86  E-value=2.1  Score=42.27  Aligned_cols=59  Identities=25%  Similarity=0.200  Sum_probs=45.1

Q ss_pred             cchHHHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 018455          160 LREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~  220 (355)
                      .+..|..+|.+.+.+ .|++|..++.|++|..++  |+|.||..    +|  ..+.|+.||+|+....
T Consensus       130 ~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (580)
T TIGR01176       130 TGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG  195 (580)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence            444477788877765 478999999999999875  56888753    45  3678999999998754

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06185 hypothetical protein; Provisional

Probab=89.78  E-value=1.7  Score=40.58  Aligned_cols=60  Identities=18%  Similarity=0.174  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe---CC-eEEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-~~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+.|.+.+.+ .|++|+.+++|.++..++  +++++|.+   +| .+++||.||.|...+. +.+.+
T Consensus       110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~  175 (407)
T PRK06185        110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA  175 (407)
T ss_pred             HHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence            45667666655 478999999999999876  34655554   45 3799999999999875 34443

>PRK08244 hypothetical protein; Provisional

Probab=89.61  E-value=1.7  Score=41.88  Aligned_cols=59  Identities=22%  Similarity=0.271  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC-eEEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-~~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +-+.|.+.+++.|++|+.+++|++|+.++++  + .|++   +| ++++||.||.|...+. ..+.+
T Consensus       102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v-~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l  165 (493)
T PRK08244        102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDG--V-EVVVRGPDGLRTLTSSYVVGADGAGSIVRKQA  165 (493)
T ss_pred             HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe--E-EEEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence            4456667777789999999999999988753  4 3443   35 4799999999998875 34443

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=89.55  E-value=1.1  Score=42.38  Aligned_cols=48  Identities=21%  Similarity=0.308  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.++++|++|+++++|.+|..  +     .|.+ +|++++||.||++++.
T Consensus       230 ~~~~~~~~L~~~gV~v~~~~~v~~v~~--~-----~v~~~~g~~i~~d~vi~~~G~  278 (424)
T PTZ00318        230 LRKYGQRRLRRLGVDIRTKTAVKEVLD--K-----EVVLKDGEVIPTGLVVWSTGV  278 (424)
T ss_pred             HHHHHHHHHHHCCCEEEeCCeEEEEeC--C-----EEEECCCCEEEccEEEEccCC
Confidence            566777889999999999999999863  2     2334 6889999999998763

>PLN02463 lycopene beta cyclase

Probab=89.55  E-value=1.3  Score=42.08  Aligned_cols=53  Identities=23%  Similarity=0.305  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+.+.|++++ .++|++|+.+++  .+ .|++ +|++++||.||.|+....
T Consensus       116 L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~--~~-~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        116 LKSKMLERCIANGVQFH-QAKVKKVVHEES--KS-LVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             HHHHHHHHHhhcCCEEE-eeEEEEEEEcCC--eE-EEEECCCCEEEcCEEEECcCCCc
Confidence            45567777777899986 679999998764  24 5766 567999999999998753

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=89.52  E-value=1.3  Score=41.11  Aligned_cols=59  Identities=15%  Similarity=0.131  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +...|.+.+.+ .|++|+.+++|++++.++++  + .|++ +|.+++||.||.|...+.. .+.+
T Consensus       112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~-~v~~~~g~~~~~~lvIgADG~~S~vR~~~  173 (384)
T PRK08849        112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--N-RVTLESGAEIEAKWVIGADGANSQVRQLA  173 (384)
T ss_pred             HHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--E-EEEECCCCEEEeeEEEEecCCCchhHHhc
Confidence            33456566554 46899999999999988753  5 4666 6789999999999998754 4443

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=89.49  E-value=1.1  Score=47.99  Aligned_cols=58  Identities=22%  Similarity=0.268  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHH---cCcEEEcCceeeEEEecCC----C---CeEEEEEe------CCe--EEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRT---RGCEFLDGRRVTDFIYDEE----R---CCISDVVC------GKE--TYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~---~G~~i~l~~~V~~I~~~~~----~---~~v~~v~~------~g~--~~~ad~VV~a~p~~~~  221 (355)
                      +...+.+.+++   .|++|+++++|+++..+++    |   ++|+||..      +|+  .+.|+.||+||..-..
T Consensus       546 i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~  621 (1167)
T PTZ00306        546 IMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN  621 (1167)
T ss_pred             HHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence            45667777664   4899999999999998642    2   26888865      243  5789999999987543

>PRK09126 hypothetical protein; Provisional

Probab=89.47  E-value=1.5  Score=40.75  Aligned_cols=59  Identities=22%  Similarity=0.253  Sum_probs=42.8

Q ss_pred             HHHHHHHHHH-HcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~-~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+.+.+.+. ..|++|+.+++|++++.++++  + .|.+ +|++++||.||.|..... ..+.+
T Consensus       112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~  173 (392)
T PRK09126        112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--A-QVTLANGRRLTARLLVAADSRFSATRRQL  173 (392)
T ss_pred             HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--E-EEEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence            4445555554 468999999999999887642  4 4655 678999999999999864 34443

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=89.43  E-value=2.1  Score=42.23  Aligned_cols=59  Identities=19%  Similarity=0.194  Sum_probs=43.9

Q ss_pred             cchHHHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 018455          160 LREKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~  220 (355)
                      .+..+...|.+.+.+. +++|..++.|++|..++  |+|.||..    +|  ..+.|+.||+|+....
T Consensus       131 ~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  196 (582)
T PRK09231        131 TGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  196 (582)
T ss_pred             cHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence            3433667777776654 78999999999999865  56777643    45  3688999999998744

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=89.41  E-value=1.3  Score=43.43  Aligned_cols=54  Identities=20%  Similarity=0.225  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +...+.+.+.+. |++| +.+.|.+|..++  ++|.+|.+ +|..+.|+.||+|+....
T Consensus       102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTFL  157 (618)
T PRK05192        102 YRAAMREILENQPNLDL-FQGEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTFL  157 (618)
T ss_pred             HHHHHHHHHHcCCCcEE-EEeEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcch
Confidence            445566666654 6787 577899998876  55878887 678999999999999643

>TIGR02053 MerA mercuric reductase

Probab=89.37  E-value=1.6  Score=41.74  Aligned_cols=52  Identities=15%  Similarity=0.194  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++  .+ .+.+    +++++++|.||+|+..
T Consensus       209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~~-~v~~~~~~~~~~i~~D~ViiA~G~  264 (463)
T TIGR02053       209 ISAAVEEALAEEGIEVVTSAQVKAVSVRGG--GK-IITVEKPGGQGEVEADELLVATGR  264 (463)
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEcCC--EE-EEEEEeCCCceEEEeCEEEEeECC
Confidence            556677778889999999999999987653  23 3433    2368999999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=89.20  E-value=3.7  Score=39.29  Aligned_cols=152  Identities=12%  Similarity=0.101  Sum_probs=79.0

Q ss_pred             EEecCCcc-hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh--hHHHh
Q 018455          154 VWCRGTLR-EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS--TLQEL  224 (355)
Q Consensus       154 ~~~~gg~~-~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~--~~~~l  224 (355)
                      .|..|-.. +++.-.++=-+.++|..+.-..+|.++..+++ |++.|+.+    .|+  .++|+.||-||.|-  .+.++
T Consensus       215 VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~M  293 (680)
T KOG0042|consen  215 VYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKM  293 (680)
T ss_pred             EEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhh
Confidence            34455432 22333333334568999988899999999887 46667655    354  56788899999874  34554


Q ss_pred             hhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeCC-
Q 018455          225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHA-  303 (355)
Q Consensus       225 ~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-  303 (355)
                      ..+..   .       .+ ..+...+|+.+.+-+. |...+ ++.+...-+.++|=.    |.   .+.++...+=.+. 
T Consensus       294 dd~~~---~-------~i-~~pSsGvHIVlP~yY~-P~~mG-lldP~TsDgRViFfl----PW---qg~TIaGTTD~pt~  353 (680)
T KOG0042|consen  294 DDEDA---K-------PI-CVPSSGVHIVLPGYYC-PENMG-LLDPKTSDGRVIFFL----PW---QGKTIAGTTDIPTS  353 (680)
T ss_pred             ccccc---C-------ce-eccCCceeEEcccccC-Ccccc-cccCCCCCCcEEEEe----cc---CCceeeccCCCCCC
Confidence            33211   1       11 2245567887776554 22222 211111112223322    21   0122211110111 


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhc
Q 018455          304 NELMPLKDDQVVAKAVSYLSKCI  326 (355)
Q Consensus       304 ~~~~~~~~ee~~~~~~~~l~~~~  326 (355)
                      ......+.|+=++.+++++..++
T Consensus       354 v~~~P~PtE~dIqfIL~ev~~yl  376 (680)
T KOG0042|consen  354 VTHSPTPTEDDIQFILKEVQHYL  376 (680)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhh
Confidence            12233444555778999999987

>PRK08013 oxidoreductase; Provisional

Probab=89.20  E-value=1.5  Score=41.06  Aligned_cols=59  Identities=14%  Similarity=0.112  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +.+.|.+.+.+. |++|+.+++|++|+.++++  + .|++ +|++++||.||-|...+.. .+.+
T Consensus       113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v-~v~~~~g~~i~a~lvVgADG~~S~vR~~~  174 (400)
T PRK08013        113 IHYALWQKAQQSSDITLLAPAELQQVAWGENE--A-FLTLKDGSMLTARLVVGADGANSWLRNKA  174 (400)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--E-EEEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence            445677776664 7899999999999887753  4 4555 7889999999999998753 4444

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=89.11  E-value=1.5  Score=40.51  Aligned_cols=59  Identities=5%  Similarity=0.134  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +.+.|.+.+++.+ .+++.+++|++|..++++  + .|.+++++++||.||.|-..+.. ++.+
T Consensus       106 L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v-~v~~~~~~~~adlvIgADG~~S~vR~~l  166 (374)
T PRK06617        106 FKKILLSKITNNPLITLIDNNQYQEVISHNDY--S-IIKFDDKQIKCNLLIICDGANSKVRSHY  166 (374)
T ss_pred             HHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--E-EEEEcCCEEeeCEEEEeCCCCchhHHhc
Confidence            5566777777665 899999999999987753  5 46666559999999999998753 4444

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=89.10  E-value=1.5  Score=41.12  Aligned_cols=59  Identities=17%  Similarity=0.177  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+.|.+.+.+ .|++|+++++|++|+.++++  + .|++ +|++++||.||.|...+. +.+.+
T Consensus       113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~  174 (405)
T PRK08850        113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE--A-WLTLDNGQALTAKLVVGADGANSWLRRQM  174 (405)
T ss_pred             HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--E-EEEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence            44556666655 47899999999999887643  4 4665 678999999999999865 34444

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=88.99  E-value=2  Score=42.42  Aligned_cols=59  Identities=19%  Similarity=0.299  Sum_probs=43.5

Q ss_pred             chHHHHHHHHHHHHcC----cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          161 REKIFEPWMDSMRTRG----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G----~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +..+...|.+.+.+.+    ++|..++.|+++..+++ |+|.||..    +++  .+.|+.||+||....
T Consensus       132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  200 (589)
T PRK08641        132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPG  200 (589)
T ss_pred             HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence            4446677777665443    67899999999998654 67888875    233  478999999998754

>TIGR00136 gidA glucose-inhibited division protein A

Probab=88.88  E-value=1.5  Score=43.07  Aligned_cols=55  Identities=18%  Similarity=0.282  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +...+.+.+++. |+++. ...|.++..+++ +++.+|.+ +|..+.|+.||+|+.+..
T Consensus        98 y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        98 YRKAMRNALENQPNLSLF-QGEVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HHHHHHHHHHcCCCcEEE-EeEEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCccc
Confidence            445566667666 56775 557888877633 45778887 567899999999999885

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=88.85  E-value=1.7  Score=40.44  Aligned_cols=54  Identities=24%  Similarity=0.345  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+.+.|++++ +++|..+..+++ + .+.|++ +|++++|+.||.|++...
T Consensus        87 l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~-~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        87 LHEELLQKCPEGGVLWL-ERKAIHAEADGV-A-LSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHHHhcCcEEE-ccEEEEEEecCC-c-eeEEEeCCCCEEEeCEEEECCCCch
Confidence            55677777777888885 668999887633 2 345666 566899999999999875

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=88.82  E-value=1.5  Score=40.74  Aligned_cols=54  Identities=19%  Similarity=0.042  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+.+.|+.++.+++|.+|+.++++  + .|++ +|++++||.||.|...+.
T Consensus       113 l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~--~-~v~~~~g~~~~a~~vI~AdG~~S  167 (388)
T PRK07494        113 LNRALEARVAELPNITRFGDEAESVRPREDE--V-TVTLADGTTLSARLVVGADGRNS  167 (388)
T ss_pred             HHHHHHHHHhcCCCcEEECCeeEEEEEcCCe--E-EEEECCCCEEEEeEEEEecCCCc
Confidence            5567777777766555899999999987753  5 4665 577899999999998864

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=88.80  E-value=1.6  Score=40.57  Aligned_cols=54  Identities=17%  Similarity=0.166  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+.+ .|++|+.+++|++|..++++  + .|++ +|.++++|.||.|...+.
T Consensus       114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~-~v~~~~g~~~~a~~vI~AdG~~S  169 (395)
T PRK05732        114 VGQRLFALLDKAPGVTLHCPARVANVERTQGS--V-RVTLDDGETLTGRLLVAADGSHS  169 (395)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--E-EEEECCCCEEEeCEEEEecCCCh
Confidence            34556666655 47899999999999877642  4 4666 667899999999998874

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=88.75  E-value=1.7  Score=41.28  Aligned_cols=56  Identities=23%  Similarity=0.275  Sum_probs=44.2

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe--EEecCEEEEccCh
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE--TYSAGAVVLAVGI  218 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~--~~~ad~VV~a~p~  218 (355)
                      ...-+.+.+.+.+++.|.+++++++|++++..+++  + .+.+ +|+  ++++|.|++|+.-
T Consensus       212 ~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v-~v~~~~g~~~~~~ad~vLvAiGR  270 (454)
T COG1249         212 EDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--V-LVTLEDGEGGTIEADAVLVAIGR  270 (454)
T ss_pred             CCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--E-EEEEecCCCCEEEeeEEEEccCC
Confidence            44447788888898888999999999999987752  4 4655 444  7899999999974

>PRK09077 L-aspartate oxidase; Provisional

Probab=88.70  E-value=2.4  Score=41.45  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=45.5

Q ss_pred             CCcchHHHHHHHHHHHHc-CcEEEcCceeeEEEecC----CCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          158 GTLREKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDE----ERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       158 gg~~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~----~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +..+..+...|.+.+.+. |++|..+++|.++..++    ++++|.+|..    +|+  .+.|+.||+|+....
T Consensus       134 ~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  207 (536)
T PRK09077        134 DATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS  207 (536)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence            334444667787777654 79999999999998753    1256888864    243  578999999998754

>PTZ00052 thioredoxin reductase; Provisional

Probab=88.64  E-value=1.7  Score=42.05  Aligned_cols=53  Identities=23%  Similarity=0.243  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|+++++++.|.+|...++  .+ .|.+ +|+++.+|.||+++.-.
T Consensus       224 ~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~--~~-~v~~~~g~~i~~D~vl~a~G~~  277 (499)
T PTZ00052        224 CSEKVVEYMKEQGTLFLEGVVPINIEKMDD--KI-KVLFSDGTTELFDTVLYATGRK  277 (499)
T ss_pred             HHHHHHHHHHHcCCEEEcCCeEEEEEEcCC--eE-EEEECCCCEEEcCEEEEeeCCC
Confidence            556788888899999999999999987653  24 3554 67889999999998754

>PTZ00058 glutathione reductase; Provisional

Probab=88.36  E-value=1.9  Score=42.23  Aligned_cols=54  Identities=15%  Similarity=0.193  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C-CeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|++++.|.+|..+++ +.+. +.. + ++++++|.||+|+.-.
T Consensus       280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~-v~~~~~~~~i~aD~VlvA~Gr~  335 (561)
T PTZ00058        280 IINELENDMKKNNINIITHANVEEIEKVKE-KNLT-IYLSDGRKYEHFDYVIYCVGRS  335 (561)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEE-EEECCCCEEEECCEEEECcCCC
Confidence            556777888889999999999999987543 2242 333 4 4579999999998643

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=88.35  E-value=1.3  Score=40.98  Aligned_cols=45  Identities=20%  Similarity=0.156  Sum_probs=36.2

Q ss_pred             HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+++.|++++++++|++|..++  .   .|.++++++.+|.+|+||...
T Consensus        66 ~~~~~~gv~~~~~~~V~~id~~~--~---~v~~~~~~~~yd~LVlATG~~  110 (377)
T PRK04965         66 EFAEQFNLRLFPHTWVTDIDAEA--Q---VVKSQGNQWQYDKLVLATGAS  110 (377)
T ss_pred             HHHHhCCCEEECCCEEEEEECCC--C---EEEECCeEEeCCEEEECCCCC
Confidence            33566799999999999998764  2   355688899999999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=88.19  E-value=2.3  Score=40.80  Aligned_cols=54  Identities=17%  Similarity=0.239  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEec-CCCCeEEEEEe-CC--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYD-EERCCISDVVC-GK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~-~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|++++.|++|..+ ++ + +..+.+ +|  +++++|.||+|+...
T Consensus       223 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~-~-~~~~~~~~g~~~~i~~D~vi~a~G~~  280 (472)
T PRK05976        223 LSKEVARLLKKLGVRVVTGAKVLGLTLKKDG-G-VLIVAEHNGEEKTLEADKVLVSVGRR  280 (472)
T ss_pred             HHHHHHHHHHhcCCEEEeCcEEEEEEEecCC-C-EEEEEEeCCceEEEEeCEEEEeeCCc
Confidence            5566778888899999999999999862 32 2 433433 55  479999999998764

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=88.14  E-value=1.6  Score=41.67  Aligned_cols=53  Identities=17%  Similarity=-0.058  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHcCcE--EEcCceeeEEEecCCCCeEEEEEe-C-C-e--EEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVC-G-K-E--TYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~--i~l~~~V~~I~~~~~~~~v~~v~~-~-g-~--~~~ad~VV~a~p~~  219 (355)
                      +.+-|.+.++..|.+  |+++++|++|...++   .|.|++ + + .  +..+|+||+|+...
T Consensus       113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~---~w~V~~~~~~~~~~~~~~d~VIvAtG~~  172 (461)
T PLN02172        113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVDG---KWRVQSKNSGGFSKDEIFDAVVVCNGHY  172 (461)
T ss_pred             HHHHHHHHHHHcCCcceEEecCEEEEEeecCC---eEEEEEEcCCCceEEEEcCEEEEeccCC
Confidence            556677777777876  999999999998653   345665 2 2 2  46799999999854

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=87.36  E-value=2.6  Score=40.32  Aligned_cols=53  Identities=23%  Similarity=0.349  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----C--CeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----G--KETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~--g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|++++.|++|+.++++  + .+.+    +  ++++++|.||+|+...
T Consensus       217 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--v-~v~~~~~~~g~~~~i~~D~vi~a~G~~  275 (466)
T PRK06115        217 TAKTLQKALTKQGMKFKLGSKVTGATAGADG--V-SLTLEPAAGGAAETLQADYVLVAIGRR  275 (466)
T ss_pred             HHHHHHHHHHhcCCEEEECcEEEEEEEcCCe--E-EEEEEEcCCCceeEEEeCEEEEccCCc
Confidence            5567788888999999999999999876532  3 2322    2  3579999999998754

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=87.12  E-value=2.9  Score=40.88  Aligned_cols=59  Identities=19%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +-+.|.+.+.+. |++|+.+++|++|++++++  | .|++   +|  ++++||.||-|...+.. .+.+
T Consensus       115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v-~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l  180 (538)
T PRK06183        115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--V-TVTLTDADGQRETVRARYVVGCDGANSFVRRTL  180 (538)
T ss_pred             HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--E-EEEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence            334566666654 8999999999999998753  5 3544   45  47999999999998754 4544

>PRK06996 hypothetical protein; Provisional

Probab=86.90  E-value=2.3  Score=39.75  Aligned_cols=59  Identities=14%  Similarity=0.104  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC---eEEecCEEEEccCh--hhHHHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGI--STLQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g---~~~~ad~VV~a~p~--~~~~~l~  225 (355)
                      +.+.|.+.+++.|++++.+++|++|+.++++  + .+++ ++   ++++||.||-|...  ....+.+
T Consensus       117 l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v-~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~  181 (398)
T PRK06996        117 LVAALARAVRGTPVRWLTSTTAHAPAQDADG--V-TLALGTPQGARTLRARIAVQAEGGLFHDQKADA  181 (398)
T ss_pred             HHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--E-EEEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence            5577888888889999999999999887753  4 4555 22   58999999999874  3334443

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=86.86  E-value=2.6  Score=40.56  Aligned_cols=53  Identities=17%  Similarity=0.093  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC---eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g---~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|++++.|.+|...++  .+ .|+. ++   +++++|.||+|+...
T Consensus       222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~--~~-~v~~~~~~~~~~i~~D~vl~a~G~~  278 (484)
T TIGR01438       222 CANKVGEHMEEHGVKFKRQFVPIKVEQIEA--KV-KVTFTDSTNGIEEEYDTVLLAIGRD  278 (484)
T ss_pred             HHHHHHHHHHHcCCEEEeCceEEEEEEcCC--eE-EEEEecCCcceEEEeCEEEEEecCC
Confidence            556777888899999999999999987653  23 3544 43   479999999998753

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK05868 hypothetical protein; Validated

Probab=86.86  E-value=2.3  Score=39.41  Aligned_cols=51  Identities=16%  Similarity=0.235  Sum_probs=39.5

Q ss_pred             HcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhhhc
Q 018455          174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIKN  227 (355)
Q Consensus       174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~~~  227 (355)
                      ..|.+|+++++|++|+.+++  .| .|++ +|++++||.||-|-..+. ..+.+..
T Consensus       116 ~~~v~i~~~~~v~~i~~~~~--~v-~v~~~dg~~~~adlvIgADG~~S~vR~~~~~  168 (372)
T PRK05868        116 QPSVEYLFDDSISTLQDDGD--SV-RVTFERAAAREFDLVIGADGLHSNVRRLVFG  168 (372)
T ss_pred             cCCcEEEeCCEEEEEEecCC--eE-EEEECCCCeEEeCEEEECCCCCchHHHHhcC
Confidence            35789999999999987664  25 4665 678999999999999875 4565543

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=86.80  E-value=3.2  Score=41.16  Aligned_cols=57  Identities=14%  Similarity=0.203  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCC-CeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~-~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +...+...+++.+++|..+++|+++..++++ |+|.||..    +|+  ++.|+.||+||....
T Consensus       128 ~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  191 (614)
T TIGR02061       128 YKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV  191 (614)
T ss_pred             HHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence            4444555566667899999999999986531 46888864    343  578999999999864

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PLN02546 glutathione reductase

Probab=86.68  E-value=3.4  Score=40.50  Aligned_cols=54  Identities=20%  Similarity=0.239  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeE-EecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET-YSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~-~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|++++.|.+|..+++ +.+ .+.+++++ ..+|.||+++...
T Consensus       295 ~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v-~v~~~~g~~~~~D~Viva~G~~  349 (558)
T PLN02546        295 VRDFVAEQMSLRGIEFHTEESPQAIIKSAD-GSL-SLKTNKGTVEGFSHVMFATGRK  349 (558)
T ss_pred             HHHHHHHHHHHCCcEEEeCCEEEEEEEcCC-CEE-EEEECCeEEEecCEEEEeeccc
Confidence            455677778889999999999999987544 333 45555444 4589999998754

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=86.28  E-value=2.4  Score=39.76  Aligned_cols=55  Identities=18%  Similarity=0.234  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe--CC--eEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g--~~~~ad~VV~a~p~~~~  221 (355)
                      +.+.|.+.+.+. |++|+.+++|++|+.++++  + .|++  ++  .+++||.||.|...+..
T Consensus       123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~-~v~~~~~~~~~~i~adlvIgADG~~S~  182 (415)
T PRK07364        123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--A-TVTLEIEGKQQTLQSKLVVAADGARSP  182 (415)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--e-EEEEccCCcceEEeeeEEEEeCCCCch
Confidence            556677777664 6899999999999887643  4 3554  23  36999999999998753

>PRK10262 thioredoxin reductase; Provisional

Probab=86.12  E-value=2.1  Score=38.64  Aligned_cols=55  Identities=16%  Similarity=0.279  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C----C--eEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G----K--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~----g--~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++.|+++++++.|++|..+++  .+.+|++ +    +  +++++|.||+++....
T Consensus       187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~--~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p  248 (321)
T PRK10262        187 LIKRLMDKVENGNIILHTNRTLEEVTGDQM--GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  248 (321)
T ss_pred             HHHHHHhhccCCCeEEEeCCEEEEEEcCCc--cEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence            445666777788999999999999986542  2445553 1    1  3799999999987643

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=86.01  E-value=3.8  Score=37.55  Aligned_cols=60  Identities=17%  Similarity=0.352  Sum_probs=46.4

Q ss_pred             CCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChh
Q 018455          158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       158 gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~  219 (355)
                      ++|..=+..+..+.|+.+|.+++|+++|..+..++|| .| .|.+    ++  ++++||.+.+++.-.
T Consensus       248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg-~v-~i~ve~ak~~k~~tle~DvlLVsiGRr  313 (506)
T KOG1335|consen  248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDG-PV-EIEVENAKTGKKETLECDVLLVSIGRR  313 (506)
T ss_pred             cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCC-ce-EEEEEecCCCceeEEEeeEEEEEccCc
Confidence            4554437778888899999999999999999999884 45 3544    23  589999999988643

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=85.85  E-value=2  Score=39.58  Aligned_cols=49  Identities=22%  Similarity=0.264  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.++++|++++++++|.+|.  +  +   .|.+ +|+++++|.||++++..
T Consensus       193 ~~~~~~~~l~~~gV~v~~~~~v~~i~--~--~---~v~~~~g~~i~~D~vi~a~G~~  242 (364)
T TIGR03169       193 VRRLVLRLLARRGIEVHEGAPVTRGP--D--G---ALILADGRTLPADAILWATGAR  242 (364)
T ss_pred             HHHHHHHHHHHCCCEEEeCCeeEEEc--C--C---eEEeCCCCEEecCEEEEccCCC
Confidence            45667777889999999999999885  2  2   2444 67899999999999854

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=85.82  E-value=2.2  Score=40.02  Aligned_cols=57  Identities=16%  Similarity=0.273  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +.+.|.+.+.  +..|+++++|++|+.++++  + .|++ +|++++||.||.|...+.. .+.+
T Consensus       107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--~-~v~~~~g~~~~ad~vVgADG~~S~vR~~l  165 (414)
T TIGR03219       107 FLDALLKHLP--EGIASFGKRATQIEEQAEE--V-QVLFTDGTEYRCDLLIGADGIKSALRDYV  165 (414)
T ss_pred             HHHHHHHhCC--CceEEcCCEEEEEEecCCc--E-EEEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence            4444544442  4678999999999987753  4 4655 6788999999999998864 4444

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK02106 choline dehydrogenase; Validated

Probab=85.69  E-value=1.5  Score=43.03  Aligned_cols=51  Identities=12%  Similarity=0.193  Sum_probs=39.7

Q ss_pred             HHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe---EEecCEEEEccChhhHHHhh
Q 018455          173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE---TYSAGAVVLAVGISTLQELI  225 (355)
Q Consensus       173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~---~~~ad~VV~a~p~~~~~~l~  225 (355)
                      ++.+.+|++++.|++|..++  +++++|++  .++   .+.++.||+|..+-...+|+
T Consensus       212 ~~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LL  267 (560)
T PRK02106        212 KRPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLL  267 (560)
T ss_pred             CCCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHH
Confidence            34568999999999999975  56888876  222   45789999999987666655

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=85.46  E-value=2.9  Score=39.82  Aligned_cols=50  Identities=24%  Similarity=0.226  Sum_probs=37.0

Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----------CC-----------eEEecCEEEEccCh
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----------GK-----------ETYSAGAVVLAVGI  218 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------~g-----------~~~~ad~VV~a~p~  218 (355)
                      ..+.+++.|++|++++.+.+|..+++ |++.+|.+          +|           .++++|.||+|+..
T Consensus       315 ~~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~  385 (449)
T TIGR01316       315 EIAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN  385 (449)
T ss_pred             HHHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence            33557788999999999999986544 55655543          12           26899999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06126 hypothetical protein; Provisional

Probab=85.44  E-value=3.6  Score=40.28  Aligned_cols=59  Identities=22%  Similarity=0.311  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +.+.|.+.+++ .|++|+++++|++|+.++++  |. +++    +|+  +++||.||.|...+.. .+.+
T Consensus       128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~l  194 (545)
T PRK06126        128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADG--VT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSL  194 (545)
T ss_pred             HHHHHHHHHHhCCCceEEeccEEEEEEECCCe--EE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhc
Confidence            44456666655 47899999999999988753  53 332    343  7899999999998763 4443

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=85.34  E-value=0.26  Score=46.62  Aligned_cols=58  Identities=28%  Similarity=0.327  Sum_probs=0.0

Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC----CeEEecCEEEEccChhhHHHhhhc
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KETYSAGAVVLAVGISTLQELIKN  227 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~----g~~~~ad~VV~a~p~~~~~~l~~~  227 (355)
                      +.+.+.+.|++|++++.|.++..++  ++|++|.+.    ..+++|+.||=|+.-..+..+...
T Consensus        96 l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~  157 (428)
T PF12831_consen   96 LDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA  157 (428)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence            3444566799999999999999986  568888772    358999999999986666665544

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=84.75  E-value=3.9  Score=38.76  Aligned_cols=61  Identities=8%  Similarity=0.139  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHcC---cEEEcCceeeEEEec-----CCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRTRG---CEFLDGRRVTDFIYD-----EERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G---~~i~l~~~V~~I~~~-----~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +.+.|.+.+++.+   ++|+.+++|.+|+.+     +++..+ .|++ +|++++||.||.|-..+.. .+.+
T Consensus       119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v-~v~~~~g~~i~a~llVgADG~~S~vR~~~  189 (437)
T TIGR01989       119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV-HITLSDGQVLYTKLLIGADGSNSNVRKAA  189 (437)
T ss_pred             HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce-EEEEcCCCEEEeeEEEEecCCCChhHHHc
Confidence            4466777777664   799999999999863     111224 4655 6789999999999998764 4443

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PLN02661 Putative thiazole synthesis

Probab=84.44  E-value=4.8  Score=36.82  Aligned_cols=54  Identities=17%  Similarity=0.216  Sum_probs=40.4

Q ss_pred             HHHHHHHHHH-HcCcEEEcCceeeEEEecCCCCeEEEEEe-------C--C------eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC-------G--K------ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~-~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------~--g------~~~~ad~VV~a~p~~  219 (355)
                      +...|.+.+. ..|++|+.++.|.++..++  +++.||.+       +  +      ..++|+.||+||...
T Consensus       174 ~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~  243 (357)
T PLN02661        174 FTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD  243 (357)
T ss_pred             HHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence            3456666544 4689999999999999876  56778774       1  1      268999999999843

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=84.43  E-value=2.7  Score=39.90  Aligned_cols=49  Identities=12%  Similarity=0.192  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++++++++|++|..    .   .|++ +|+++++|.||+|++..
T Consensus       191 ~~~~l~~~l~~~gI~i~~~~~v~~i~~----~---~v~~~~g~~~~~D~vl~a~G~~  240 (438)
T PRK13512        191 MNQPILDELDKREIPYRLNEEIDAING----N---EVTFKSGKVEHYDMIIEGVGTH  240 (438)
T ss_pred             HHHHHHHHHHhcCCEEEECCeEEEEeC----C---EEEECCCCEEEeCEEEECcCCC
Confidence            556777888899999999999999962    1   2433 67789999999998854

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=84.16  E-value=4.5  Score=37.68  Aligned_cols=59  Identities=14%  Similarity=0.040  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEe-cCCCCeEEEEEe--CCe--EEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIY-DEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~-~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+.|.+.+.+.|++|+++++|++|+. ++++  + .|+.  +|+  +++||.||-|-..+. +.+.+
T Consensus       105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~  169 (392)
T PRK08243        105 VTRDLMAARLAAGGPIRFEASDVALHDFDSDR--P-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASI  169 (392)
T ss_pred             HHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--e-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhc
Confidence            445666666678999999999999987 4432  3 3544  553  689999999998875 34544

>PRK07236 hypothetical protein; Provisional

Probab=84.04  E-value=3.6  Score=38.19  Aligned_cols=43  Identities=19%  Similarity=0.171  Sum_probs=34.4

Q ss_pred             CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455          176 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       176 G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~  221 (355)
                      +.+|+++++|++|+.++++  + .|++ +|++++||.||.|-..+..
T Consensus       112 ~~~i~~~~~v~~i~~~~~~--v-~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236        112 AERYHLGETLVGFEQDGDR--V-TARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             CcEEEcCCEEEEEEecCCe--E-EEEECCCCEEEeCEEEECCCCCch
Confidence            4689999999999987642  5 3555 6789999999999887653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=83.73  E-value=3.7  Score=39.40  Aligned_cols=48  Identities=19%  Similarity=0.195  Sum_probs=36.2

Q ss_pred             HHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe------CC---------eEEecCEEEEccCh
Q 018455          169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC------GK---------ETYSAGAVVLAVGI  218 (355)
Q Consensus       169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~------~g---------~~~~ad~VV~a~p~  218 (355)
                      .+.+.+.|+++++++.+.+|..++  |++.+|.+      +|         ++++||.||+|+..
T Consensus       336 ~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~  398 (471)
T PRK12810        336 VSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF  398 (471)
T ss_pred             HHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence            345667899999999999997544  56766643      12         57899999999974

>PRK07846 mycothione reductase; Reviewed

Probab=83.26  E-value=4.3  Score=38.72  Aligned_cols=52  Identities=19%  Similarity=0.228  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+. .+.|.+++++++|++|+.+++  .+ .|.+ +|+++++|.||+|+...
T Consensus       209 ~~~~l~~l-~~~~v~i~~~~~v~~i~~~~~--~v-~v~~~~g~~i~~D~vl~a~G~~  261 (451)
T PRK07846        209 ISERFTEL-ASKRWDVRLGRNVVGVSQDGS--GV-TLRLDDGSTVEADVLLVATGRV  261 (451)
T ss_pred             HHHHHHHH-HhcCeEEEeCCEEEEEEEcCC--EE-EEEECCCcEeecCEEEEEECCc
Confidence            44444433 356899999999999987653  34 3555 57789999999998654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=83.06  E-value=2.8  Score=43.03  Aligned_cols=46  Identities=24%  Similarity=0.297  Sum_probs=36.5

Q ss_pred             HHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      .+.++++|++++++++|++|..++  .   .|.+ +|+++.+|.+|+||...
T Consensus        61 ~~~~~~~gv~~~~g~~V~~Id~~~--k---~V~~~~g~~~~yD~LVlATGs~  107 (785)
T TIGR02374        61 KDWYEKHGITLYTGETVIQIDTDQ--K---QVITDAGRTLSYDKLILATGSY  107 (785)
T ss_pred             HHHHHHCCCEEEcCCeEEEEECCC--C---EEEECCCcEeeCCEEEECCCCC
Confidence            344677899999999999998765  2   2444 67789999999999864

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=82.73  E-value=4.4  Score=38.66  Aligned_cols=50  Identities=22%  Similarity=0.236  Sum_probs=35.9

Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--------------------CCeEEecCEEEEccChh
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--------------------GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--------------------~g~~~~ad~VV~a~p~~  219 (355)
                      ..+.+++.|++|++++.|.+|..+++  ++.+|++                    ++++++||.||+|+...
T Consensus       317 ~~~~~~~~GV~i~~~~~v~~i~~~~~--~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~  386 (457)
T PRK11749        317 EVEHAKEEGVEFEWLAAPVEILGDEG--RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT  386 (457)
T ss_pred             HHHHHHHCCCEEEecCCcEEEEecCC--ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC
Confidence            34567788999999999999986553  2334432                    12478999999998753

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=82.35  E-value=3.3  Score=38.65  Aligned_cols=43  Identities=14%  Similarity=0.256  Sum_probs=34.3

Q ss_pred             HHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.|+++++++.|..|..++  .   .|.+ +|+++.+|++|+||...
T Consensus        68 ~~~~~i~~~~g~~V~~id~~~--~---~v~~~~g~~~~yd~LViATGs~  111 (396)
T PRK09754         68 WQENNVHLHSGVTIKTLGRDT--R---ELVLTNGESWHWDQLFIATGAA  111 (396)
T ss_pred             HHHCCCEEEcCCEEEEEECCC--C---EEEECCCCEEEcCEEEEccCCC
Confidence            456789999999999998765  2   2444 67889999999999865

>TIGR03452 mycothione_red mycothione reductase

Probab=82.32  E-value=5.4  Score=38.06  Aligned_cols=52  Identities=19%  Similarity=0.264  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+ +.|.+|++++.|++|..+++  .+ .|.+ +|+++++|.||+|++..
T Consensus       212 ~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~--~v-~v~~~~g~~i~~D~vl~a~G~~  264 (452)
T TIGR03452       212 ISDRFTEIA-KKKWDIRLGRNVTAVEQDGD--GV-TLTLDDGSTVTADVLLVATGRV  264 (452)
T ss_pred             HHHHHHHHH-hcCCEEEeCCEEEEEEEcCC--eE-EEEEcCCCEEEcCEEEEeeccC
Confidence            444444433 46899999999999987653  24 3555 57789999999999643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=82.20  E-value=2.9  Score=37.31  Aligned_cols=56  Identities=23%  Similarity=0.252  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHc------CcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~------G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~~~  221 (355)
                      |+.+|.+.+++.      -+.|.++++|..|..++  |+|.+|..   +|+  .+.++.||+|+..-.+
T Consensus       141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence            556666665432      25899999999999666  67989876   453  5789999999987654

>PRK06475 salicylate hydroxylase; Provisional

Probab=81.98  E-value=6.3  Score=36.82  Aligned_cols=59  Identities=20%  Similarity=0.230  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe---C-CeEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~-g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +.+.|.+.+.+ .|++|+++++|+++..++++  + .|++   + +++++||.||-|-..+.. .+.+
T Consensus       109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v-~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~  173 (400)
T PRK06475        109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--I-TATIIRTNSVETVSAAYLIACDGVWSMLRAKA  173 (400)
T ss_pred             HHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--e-EEEEEeCCCCcEEecCEEEECCCccHhHHhhc
Confidence            55667777655 47899999999999987643  4 3443   3 357999999999998864 5554

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=81.97  E-value=6.3  Score=38.63  Aligned_cols=60  Identities=13%  Similarity=0.188  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe---CCe-EEecCEEEEccChhh-HHHhhh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TYSAGAVVLAVGIST-LQELIK  226 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~-~~~ad~VV~a~p~~~-~~~l~~  226 (355)
                      +-+.|.+.+++. |++|+++++|.+++.++++  + .+++   +|+ +++||.||.|...+. ..+.+.
T Consensus       127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--v-~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg  192 (547)
T PRK08132        127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDG--V-TLTVETPDGPYTLEADWVIACDGARSPLREMLG  192 (547)
T ss_pred             HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE--E-EEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence            334566666664 6899999999999988753  4 2333   343 789999999998875 445543

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=81.73  E-value=5.5  Score=38.83  Aligned_cols=57  Identities=19%  Similarity=0.074  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHcC--cEEEcCceeeEEEecCCC--CeEEEEEe--CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEER--CCISDVVC--GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G--~~i~l~~~V~~I~~~~~~--~~v~~v~~--~g~--~~~ad~VV~a~p~~~  220 (355)
                      +.+-|...++..+  ..|++||+|.+|+..+|.  ...|.|++  +|+  +..+|+||+|+....
T Consensus        86 v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~  150 (531)
T PF00743_consen   86 VLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS  150 (531)
T ss_dssp             HHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred             HHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence            3344444455444  379999999999986541  01456766  343  457999999998755

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=81.70  E-value=5.9  Score=37.96  Aligned_cols=49  Identities=24%  Similarity=0.300  Sum_probs=35.5

Q ss_pred             HHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----------C---------C--eEEecCEEEEccCh
Q 018455          169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----------G---------K--ETYSAGAVVLAVGI  218 (355)
Q Consensus       169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------~---------g--~~~~ad~VV~a~p~  218 (355)
                      .+.+++.|+++++++.+.+|..+++ |++.+|++          +         |  .+++||.||+|+..
T Consensus       327 ~~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~  396 (467)
T TIGR01318       327 VANAREEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF  396 (467)
T ss_pred             HHHHHhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC
Confidence            3446678999999999999986544 45655543          1         1  36899999999874

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12831 putative oxidoreductase; Provisional

Probab=81.64  E-value=4.9  Score=38.48  Aligned_cols=48  Identities=17%  Similarity=0.265  Sum_probs=35.4

Q ss_pred             HHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-------------------CC--eEEecCEEEEccChh
Q 018455          171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------GK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       171 ~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------------------~g--~~~~ad~VV~a~p~~  219 (355)
                      .+++.|++|++++.+.+|..+++ |++.+|.+                   +|  .+++||.||+|+...
T Consensus       327 ~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~  395 (464)
T PRK12831        327 HAKEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTS  395 (464)
T ss_pred             HHHHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCC
Confidence            35668999999999999986554 55655543                   12  268999999999754

>PRK06753 hypothetical protein; Provisional

Probab=80.66  E-value=5.5  Score=36.71  Aligned_cols=47  Identities=15%  Similarity=0.237  Sum_probs=36.2

Q ss_pred             CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 018455          176 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       176 G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+|+++++|++|+.+++  .+ .|++ +|+++++|.||-|...+. +++.+
T Consensus       110 ~~~i~~~~~v~~i~~~~~--~v-~v~~~~g~~~~~~~vigadG~~S~vR~~~  158 (373)
T PRK06753        110 EDAIFTGKEVTKIENETD--KV-TIHFADGESEAFDLCIGADGIHSKVRQSV  158 (373)
T ss_pred             CceEEECCEEEEEEecCC--cE-EEEECCCCEEecCEEEECCCcchHHHHHh
Confidence            468999999999997764  35 4665 678899999999999875 34444

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=80.50  E-value=8.7  Score=32.51  Aligned_cols=56  Identities=25%  Similarity=0.274  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC------------CeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~------------g~~~~ad~VV~a~p~~~  220 (355)
                      ++..|+...-+.|.+|..++.|+.|...++ .+|.||++|            --+++|+.||-||..+.
T Consensus       111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda  178 (262)
T COG1635         111 FASKLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA  178 (262)
T ss_pred             HHHHHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence            344566666677999999999999999875 258888763            23789999999997764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=80.41  E-value=5.7  Score=38.61  Aligned_cols=50  Identities=12%  Similarity=0.294  Sum_probs=37.0

Q ss_pred             HHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-C---C--eEEecCEEEEccChh
Q 018455          168 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       168 l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+++ .|++|++++.|++|..++  +++.+|.+ +   |  ++++||.||+++...
T Consensus       393 l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~  449 (515)
T TIGR03140       393 LQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV  449 (515)
T ss_pred             HHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence            4555665 599999999999998654  44655654 2   2  478999999998754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK11445 putative oxidoreductase; Provisional

Probab=80.34  E-value=8  Score=35.42  Aligned_cols=45  Identities=13%  Similarity=0.135  Sum_probs=35.2

Q ss_pred             HcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChhhH
Q 018455          174 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGISTL  221 (355)
Q Consensus       174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~~~  221 (355)
                      +.|++|+.++.|++|+.++++  + .|+.  +|+  +++||.||.|......
T Consensus       110 ~~gv~v~~~~~v~~i~~~~~~--~-~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445        110 PASVEVYHNSLCRKIWREDDG--Y-HVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             hcCCEEEcCCEEEEEEEcCCE--E-EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            468999999999999987753  3 4543  453  6899999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	5e-04

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 51/341 (14%), Positives = 112/341 (32%), Gaps = 31/341 (9%)

Query: 11  IFSLVDELGIKPF-TGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVD 69
           I  L  ELG++ +    ++   +  +G    F        +  P+  L +  F R  + D
Sbjct: 68  ILRLAKELGLETYKVNEVERLIHHVKGKSYPFR--GPFPPVWNPITYLDHNNFWRT-MDD 124

Query: 70  RLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAE 129
               +P  A             ++D++T +EL  +   +E   + +    V + + A   
Sbjct: 125 MGREIPSDA-----PWKAPLAEEWDNMTMKELLDKLCWTE-SAKQLATLFVNLCVTAETH 178

Query: 130 QCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR-----R 184
           + SA   L  L+++         ++      +E+ F      +  R  + L  R      
Sbjct: 179 EVSA---LWFLWYVKQCGG-TTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERP 234

Query: 185 VTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL-IKNSILCNREEFLKVLNLA 243
           V       E   +       E Y A  V+ A+  +   ++     +   R + +  + L 
Sbjct: 235 VIYIDQTRENVLV--ETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLG 292

Query: 244 SIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY-- 301
           S  V+   +++ +                  A   + L    D   + +   I   F   
Sbjct: 293 S--VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTL---DDTKPEGNYAAIMG-FILA 346

Query: 302 -HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRR 341
             A +L  L  ++ + K     +K +        + ++ + 
Sbjct: 347 HKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKN 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.94
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.92
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.92
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.91
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.9
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.9
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.88
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.86
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.85
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.85
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.83
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.77
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.69
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.66
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.64
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.59
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.58
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	99.55
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.46
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.45
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.43
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.41
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.38
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.36
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.36
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.21
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.21
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.17
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.16
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.14
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.13
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.09
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.08
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.75
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.73
3dme_A	369	Conserved exported protein; structural genomics, P	97.57
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	97.4
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	97.3
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.3
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.08
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.0
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	96.9
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	96.83
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	96.73
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	96.69
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	96.68
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.61
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.61
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	96.55
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	96.52
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	96.51
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.49
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	96.47
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	96.46
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.46
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.39
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.16
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	96.16
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	95.98
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	95.94
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	95.89
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	95.74
2cul_A	232	Glucose-inhibited division protein A-related PROT	95.69
3atr_A	453	Conserved archaeal protein; saturating double bond	95.68
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.65
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.61
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.59
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	95.59
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	95.57
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	95.5
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	95.47
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	95.46
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	95.44
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.41
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	95.4
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	95.39
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	95.31
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	95.31
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.28
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.28
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	95.24
1fec_A	490	Trypanothione reductase; redox-active center, oxid	95.21
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.12
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	95.1
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	95.08
4dna_A	463	Probable glutathione reductase; structural genomic	95.08
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	95.07
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	95.04
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	95.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	94.96
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	94.9
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	94.86
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	94.68
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	94.64
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	94.58
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	94.56
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	94.52
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.4
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	94.34
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.33
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	94.32
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	94.2
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	94.19
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	94.19
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	94.17
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	94.12
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	94.12
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.07
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	93.99
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	93.8
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	93.77
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.76
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	93.73
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.54
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	93.51
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	93.48
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	93.38
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	93.33
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	93.33
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	93.27
2bry_A	497	NEDD9 interacting protein with calponin homology a	93.27
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	93.21
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	93.21
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	93.11
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	93.06
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	92.98
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	92.97
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	92.94
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	92.77
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	92.73
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	92.69
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.68
1ojt_A	482	Surface protein; redox-active center, glycolysis,	92.52
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	92.52
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	92.41
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	92.35
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	92.28
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	92.25
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	92.24
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	92.2
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	92.16
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	92.09
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	92.04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	92.03
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	91.92
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	91.87
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	91.85
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	91.72
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	91.65
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	91.22
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	91.1
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	90.94
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	90.76
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	90.74
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	90.54
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	90.38
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	90.35
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	90.35
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.3
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	90.29
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	90.24
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	90.13
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	90.08
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	90.03
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	90.01
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	90.0
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	89.93
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	89.88
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	89.48
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	89.44
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	89.37
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	89.32
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	89.31
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	89.3
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	89.26
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	88.93
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	88.92
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	88.48
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	88.13
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	87.79
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	87.67
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	87.56
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	87.48
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	87.37
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	87.19
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	87.18
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	87.18
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	86.69
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	86.26
4hb9_A	412	Similarities with probable monooxygenase; flavin,	86.2
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	86.05
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	85.99
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	85.65
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	85.38
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	85.06
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	84.93
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	84.2
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	84.18
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	84.03
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	83.95
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	83.51
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	82.4
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	82.15
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	81.96
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	81.36
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	81.26
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	81.01
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	80.7
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	80.65
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	80.37
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	80.3

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.94  E-value=8.1e-24  Score=197.92  Aligned_cols=267  Identities=11%  Similarity=0.082  Sum_probs=192.1

Q ss_pred             CCCHHhhhchhhHHHHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHH
Q 018455           64 RLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI  143 (355)
Q Consensus        64 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~  143 (355)
                      .+++.++++....+....     .   ...++.|+.+|++++ ++++..+.++++++...++.+++++|+..++..+...
T Consensus       112 ~~~~~~~~~~~~~~~~~~-----~---~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  182 (425)
T 3ka7_A          112 LLSYKDRMKIALLIVSTR-----K---NRPSGSSLQAWIKSQ-VSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENM  182 (425)
T ss_dssp             GSCHHHHHHHHHHHHHTT-----T---SCCCSSBHHHHHHHH-CCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhhh-----h---cCCCCCCHHHHHHHh-cCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHH
Confidence            356777776544322211     0   124578999999998 6677778899999999999999999999888877764


Q ss_pred             HHhcCCCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH
Q 018455          144 ILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE  223 (355)
Q Consensus       144 ~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~  223 (355)
                      . ...   ...+++||++. ++++|++.++++|++|+++++|++|..++  +++++|+++|++++||.||+|+|++.+.+
T Consensus       183 ~-~~~---~~~~~~gG~~~-l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~gv~~~g~~~~ad~VV~a~~~~~~~~  255 (425)
T 3ka7_A          183 Y-RFG---GTGIPEGGCKG-IIDALETVISANGGKIHTGQEVSKILIEN--GKAAGIIADDRIHDADLVISNLGHAATAV  255 (425)
T ss_dssp             H-HHC---SCEEETTSHHH-HHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTEEEECSEEEECSCHHHHHH
T ss_pred             H-hcC---CccccCCCHHH-HHHHHHHHHHHcCCEEEECCceeEEEEEC--CEEEEEEECCEEEECCEEEECCCHHHHHH
Confidence            2 211   24689999988 88999999999999999999999999987  45777888999999999999999999999


Q ss_pred             hhhccc-cc-CcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCC-CccceeeEcccccccccCCCceEEEEEe
Q 018455          224 LIKNSI-LC-NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD-SLAWTFFDLNKIYDEHKDDSATVIQADF  300 (355)
Q Consensus       224 l~~~~~-l~-~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~  300 (355)
                      |++... ++ ...+.+.+.++.+++.++++++++++++.  .++.+++.+. .+.. +...|...|..++++++++.+.+
T Consensus       256 ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~s~~~p~~ap~G~~~l~~~~  332 (425)
T 3ka7_A          256 LCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLVG--HTGVLLTPYTRRING-VNEVTQADPELAPPGKHLTMCHQ  332 (425)
T ss_dssp             HTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSSC--SSSEEECCSSSSEEE-EECGGGTCGGGSCTTCEEEEEEE
T ss_pred             hcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCccC--cCEEEECCChhhcce-EEeccCCCCCcCCCCCeEEEEEe
Confidence            987432 11 13344567778888888999999998762  3444444332 2222 33345556666544556655544


Q ss_pred             eCCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          301 YHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       301 ~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      ....+..+. .++.++.++++|++++|+.. .++  ..+.+|+.++|++.||.
T Consensus       333 ~~~~~~~~~-~~~~~~~~~~~l~~~~p~~~-~~~--~~v~~~~~~~P~~~~~~  381 (425)
T 3ka7_A          333 YVAPENVKN-LESEIEMGLEDLKEIFPGKR-YEV--LLIQSYHDEWPVNRAAS  381 (425)
T ss_dssp             EECGGGGGG-HHHHHHHHHHHHHHHSTTCC-EEE--EEEEEEBTTBCSBSSCT
T ss_pred             ccccccccc-hHHHHHHHHHHHHHhCCCCc-eEE--EEEEEECCCcccccccc
Confidence            332222222 24557899999999999842 444  47899999999999884

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.92  E-value=7.1e-24  Score=201.27  Aligned_cols=250  Identities=12%  Similarity=0.082  Sum_probs=183.4

Q ss_pred             cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH----------Hhc---------------
Q 018455           93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAH---------------  147 (355)
Q Consensus        93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~----------~~~---------------  147 (355)
                      .+++|+.+|++++ +++++.+.+++|++.++++.+++++|+..++..+....          +..               
T Consensus       141 ~~~~s~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~  219 (477)
T 3nks_A          141 EPDETVHSFAQRR-LGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQA  219 (477)
T ss_dssp             SSCCBHHHHHHHH-HCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHH
T ss_pred             CCCcCHHHHHHHh-hCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhh
Confidence            5678999999996 88999999999999999999999999998876654320          000               


Q ss_pred             -CCCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhh
Q 018455          148 -QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK  226 (355)
Q Consensus       148 -~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~l~~  226 (355)
                       ..+..+.+++||+++ ++++|++.+++.|++|++|++|++|..+++  .++.|++++++++||+||+|+|++.+.+|++
T Consensus       220 ~~~~~~~~~~~gG~~~-l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~--~~~~v~~~~~~~~ad~vv~a~p~~~~~~ll~  296 (477)
T 3nks_A          220 LAERWSQWSLRGGLEM-LPQALETHLTSRGVSVLRGQPVCGLSLQAE--GRWKVSLRDSSLEADHVISAIPASVLSELLP  296 (477)
T ss_dssp             HHTTCSEEEETTCTTH-HHHHHHHHHHHTTCEEECSCCCCEEEECGG--GCEEEECSSCEEEESEEEECSCHHHHHHHSC
T ss_pred             cccCccEEEECCCHHH-HHHHHHHHHHhcCCEEEeCCEEEEEEEcCC--ceEEEEECCeEEEcCEEEECCCHHHHHHhcc
Confidence             011245778999999 889999999999999999999999998764  2456777778899999999999999999986


Q ss_pred             cccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccC---CCccceeeEccccccccc-CCCceEEEEEeeC
Q 018455          227 NSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---DSLAWTFFDLNKIYDEHK-DDSATVIQADFYH  302 (355)
Q Consensus       227 ~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~g~~l~~~~~~  302 (355)
                      +..   ++....+.++++.++.+++++|+++++.....+.++...   ...++ +|+.+. .+... +++.+++.+.+..
T Consensus       297 ~~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~s~~-~~~~~~~~~~~~l~~~~gg  371 (477)
T 3nks_A          297 AEA---APLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGI-VYDSVA-FPEQDGSPPGLRVTVMLGG  371 (477)
T ss_dssp             GGG---HHHHHHHHTCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEE-ECHHHH-CGGGSTTTTCEEEEEEECH
T ss_pred             ccC---HHHHHHHhcCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEE-EEeccc-cCCCCCCCCceEEEEEECC
Confidence            532   233346778888899999999999877312222222211   12233 465332 33322 2344555443331


Q ss_pred             --C----CCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          303 --A----NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       303 --~----~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                        .    +....++++++++.++++|+++++..  ..+....+++|++++|++.||+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~v~rw~~a~p~~~~g~  426 (477)
T 3nks_A          372 SWLQTLEASGCVLSQELFQQRAQEAAATQLGLK--EMPSHCLVHLHKNCIPQYTLGH  426 (477)
T ss_dssp             HHHHHHHHSSCCCCHHHHHHHHHHHHHHHHCCC--SCCSEEEEEEEEEEEECCBTTH
T ss_pred             ccccccccccCCCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEEEcCCccCCCCCCH
Confidence              1    11235689999999999999999753  4567889999999999999985

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.92  E-value=2.3e-23  Score=197.22  Aligned_cols=326  Identities=14%  Similarity=0.131  Sum_probs=204.3

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcc--cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAA   79 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~   79 (355)
                      |.+...|+++.+|++++|++......  ...++..+|+...   +........|.+...+++.+.+++.++++...   .
T Consensus        65 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~  138 (470)
T 3i6d_A           65 DSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRTLHP---MPKGAVMGIPTKIAPFVSTGLFSLSGKARAAM---D  138 (470)
T ss_dssp             CCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEECSSCEEE---CCC---------------------CCSHHHHH---H
T ss_pred             hhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEECCEEEE---CCCCcccCCcCchHHhhccCcCCHHHHHHHhc---C
Confidence            66778899999999999998654321  2222224454321   11100011222222234445555555555322   2


Q ss_pred             HhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH------Hhc------
Q 018455           80 VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII------LAH------  147 (355)
Q Consensus        80 ~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~------~~~------  147 (355)
                      ....     .....+++|+.+|+++. ++.+..+.++.|++.++++.+++++|+..++..+..+.      ...      
T Consensus       139 ~~~~-----~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (470)
T 3i6d_A          139 FILP-----ASKTKDDQSLGEFFRRR-VGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRP  212 (470)
T ss_dssp             HHSC-----CCSSSSCCBHHHHHHHH-SCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-----------------
T ss_pred             cccC-----CCCCCCCcCHHHHHHHh-cCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhcc
Confidence            2211     11246789999999997 88898999999999999999999999987765442110      000      


Q ss_pred             ---------CCCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccC
Q 018455          148 ---------QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVG  217 (355)
Q Consensus       148 ---------~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p  217 (355)
                               ........++||++. +++.|++.+.+  ++|+++++|++|+.++++  + .|++ +|++++||+||+|+|
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~g~~~-l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~--~-~v~~~~g~~~~ad~vi~a~p  286 (470)
T 3i6d_A          213 QGSGQQLTAKKQGQFQTLSTGLQT-LVEEIEKQLKL--TKVYKGTKVTKLSHSGSC--Y-SLELDNGVTLDADSVIVTAP  286 (470)
T ss_dssp             --------------EEEETTCTHH-HHHHHHHTCCS--EEEECSCCEEEEEECSSS--E-EEEESSSCEEEESEEEECSC
T ss_pred             ccccccccccCCceEEEeCChHHH-HHHHHHHhcCC--CEEEeCCceEEEEEcCCe--E-EEEECCCCEEECCEEEECCC
Confidence                     001245568899988 67777766543  799999999999998753  5 5776 677899999999999


Q ss_pred             hhhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCC--cceeccCCCc--cceeeEcccccccccCCCc
Q 018455          218 ISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS--NACSGFGDSL--AWTFFDLNKIYDEHKDDSA  293 (355)
Q Consensus       218 ~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g  293 (355)
                      ++.+.+|++++++  .   ..+.++++.++.++++.|++++|.....  +.+.......  ..++++ +...+...+++.
T Consensus       287 ~~~~~~l~~~~~~--~---~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~-s~~~~~~~p~~~  360 (470)
T 3i6d_A          287 HKAAAGMLSELPA--I---SHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWT-NKKWPHAAPEGK  360 (470)
T ss_dssp             HHHHHHHTTTSTT--H---HHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEH-HHHCGGGSCTTC
T ss_pred             HHHHHHHcCCchh--h---HHHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEE-cCcCCCcCCCCC
Confidence            9999999876532  2   3667888889999999999998732111  1122212221  112232 222233332233


Q ss_pred             eEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          294 TVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       294 ~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      .++.+.+.  .+..+..++++++++.++++|+++||..  .++....+++|++++|.+.||+
T Consensus       361 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~p~~~~~~~w~~a~p~~~~g~  420 (470)
T 3i6d_A          361 TLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNIN--GEPEMTCVTRWHESMPQYHVGH  420 (470)
T ss_dssp             EEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGGGSCCC--SCCSEEEEEEEEEEEEECBTTH
T ss_pred             EEEEEEECCCCCccccCCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEcCCccCCCCCCH
Confidence            44444333  2234567899999999999999999864  4567789999999999999985

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.91  E-value=8.2e-23  Score=193.87  Aligned_cols=326  Identities=13%  Similarity=0.089  Sum_probs=214.2

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcc--cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAA   79 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~   79 (355)
                      |.+...++++.++++++|++......  +..++..+|+...   +.....+..|.+...+++.+.+++.+++ ...   .
T Consensus        60 ~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~g~~~~---~p~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~---~  132 (475)
T 3lov_A           60 DSYVARKHILTDLIEAIGLGEKLVRNNTSQAFILDTGGLHP---IPKGAVMGIPTDLDLFRQTTLLTEEEKQ-EVA---D  132 (475)
T ss_dssp             CCEETTSTHHHHHHHHTTCGGGEEECCCCCEEEEETTEEEE---CCSSEETTEESCHHHHTTCSSSCHHHHH-HHH---H
T ss_pred             hhhhcccHHHHHHHHHcCCcceEeecCCCceEEEECCEEEE---CCCcccccCcCchHHHhhccCCChhHHH-Hhh---C
Confidence            67788899999999999998543321  2122223454221   1100001123333335667778888877 222   2


Q ss_pred             HhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH----------HhcC-
Q 018455           80 VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAHQ-  148 (355)
Q Consensus        80 ~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~----------~~~~-  148 (355)
                      ..... ........+++|+.+|++++ ++++..+.++.|++.++++.+++++|+..++..+..+.          .... 
T Consensus       133 ~~~~~-~~~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~  210 (475)
T 3lov_A          133 LLLHP-SDSLRIPEQDIPLGEYLRPR-LGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRP  210 (475)
T ss_dssp             HHHSC-CTTCCCCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC
T ss_pred             cccCC-cccccCCCCCcCHHHHHHHH-hCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcc
Confidence            22111 11111246789999999996 88999999999999999999999999876655443210          0000 


Q ss_pred             -------------CCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEE
Q 018455          149 -------------KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVL  214 (355)
Q Consensus       149 -------------~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~  214 (355)
                                   .+..+.+++||+++ ++++|++.+.+  ++|++|++|++|+.+++  .+ .|++ +| +++||+||+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~G~~~-l~~~l~~~l~~--~~i~~~~~V~~i~~~~~--~~-~v~~~~g-~~~ad~vV~  283 (475)
T 3lov_A          211 LDQLPQTPQTTIKATGQFLSLETGLES-LIERLEEVLER--SEIRLETPLLAISREDG--RY-RLKTDHG-PEYADYVLL  283 (475)
T ss_dssp             --------------CCSEEEETTCHHH-HHHHHHHHCSS--CEEESSCCCCEEEEETT--EE-EEECTTC-CEEESEEEE
T ss_pred             cccccccccccccCCCcEEeeCChHHH-HHHHHHhhccC--CEEEcCCeeeEEEEeCC--EE-EEEECCC-eEECCEEEE
Confidence                         12345678999998 77888776643  79999999999998874  24 5777 45 899999999


Q ss_pred             ccChhhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCC-CcceeccCCCc--cceeeEcccccccccCC
Q 018455          215 AVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGDSL--AWTFFDLNKIYDEHKDD  291 (355)
Q Consensus       215 a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  291 (355)
                      |+|++.+.+|++++++      ..+.++++.++.+++++|+++++.+.. .+.++....+.  ..++|+ +...+... |
T Consensus       284 a~p~~~~~~ll~~~~~------~~~~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~-s~~~~~~~-p  355 (475)
T 3lov_A          284 TIPHPQVVQLLPDAHL------PELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAI-DQKWNHSA-P  355 (475)
T ss_dssp             CSCHHHHHHHCTTSCC------HHHHTCCEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEH-HHHCTTTC-T
T ss_pred             CCCHHHHHHHcCccCH------HHHhcCCCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEE-cccCCCCC-C
Confidence            9999999999877542      356788888999999999998732111 11222222222  112233 22233332 2


Q ss_pred             CceEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          292 SATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       292 ~g~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      +..++.+.+.  .+..+..++++++++.++++|+++||..  .+++...+++|++++|.+.||+
T Consensus       356 ~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~g~~--~~p~~~~v~~w~~a~p~~~~g~  417 (475)
T 3lov_A          356 DHTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICGRT--LEPKQVIISRLMDGLPAYTVGH  417 (475)
T ss_dssp             TEEEEEEEECBTTBCGGGGSCHHHHHHHHHHHHHHHHSSC--CCCSEEEEEEEEEEEECCCTTH
T ss_pred             CcEEEEEEeCCCCCCcccCCCHHHHHHHHHHHHHHHhCCC--CCCeEEEEEEcccCCCCCCCCh
Confidence            3344443333  2234567899999999999999999853  3577889999999999999985

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.90  E-value=7e-22  Score=187.60  Aligned_cols=319  Identities=15%  Similarity=0.084  Sum_probs=207.5

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcc----cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWM----KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLM   77 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~   77 (355)
                      |.+...++++.++++++|++....+.    ...++..+|+.+         .+|  .+...+++.+.+++.++++.+.  
T Consensus        70 ~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~g~~~---------~~p--~~~~~~~~~~~~~~~~~~~~~~--  136 (478)
T 2ivd_A           70 NSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLR---------SVP--ASPPAFLASDILPLGARLRVAG--  136 (478)
T ss_dssp             CCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEE---------ECC--CSHHHHHTCSSSCHHHHHHHHG--
T ss_pred             hhhhhhhHHHHHHHHHcCCcceeeecCccccceEEEECCEEE---------ECC--CCHHHhccCCCCCHHHHHHHhh--
Confidence            55667789999999999997432211    112222345321         122  2222234445566666665332  


Q ss_pred             HHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHh-----------
Q 018455           78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA-----------  146 (355)
Q Consensus        78 ~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~-----------  146 (355)
                       ......     ....+++|+.+|+++. ++++..+.++.|++.++++.+++++|+.+++..+..+...           
T Consensus       137 -~~~~~~-----~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  209 (478)
T 2ivd_A          137 -ELFSRR-----APEGVDESLAAFGRRH-LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRA  209 (478)
T ss_dssp             -GGGCCC-----CCTTCCCBHHHHHHHH-TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHH
T ss_pred             -hhhcCC-----CCCCCCCCHHHHHHHh-hCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHh
Confidence             222111     1136789999999997 8899999999999999999999999998776655432100           


Q ss_pred             ----------cCCC----cceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCeEEe
Q 018455          147 ----------HQKN----FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYS  208 (355)
Q Consensus       147 ----------~~~~----~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~~~~  208 (355)
                                ...+    ....+++||+++ ++++|++.+   |++|+++++|++|..++++  + .|++    +|++++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~l~~~l---g~~i~~~~~V~~i~~~~~~--~-~v~~~~~~~g~~~~  282 (478)
T 2ivd_A          210 QKAQRQAALPAGTAPKLSGALSTFDGGLQV-LIDALAASL---GDAAHVGARVEGLAREDGG--W-RLIIEEHGRRAELS  282 (478)
T ss_dssp             HHHHTCC----CCSCCCCCCEEEETTCTHH-HHHHHHHHH---GGGEESSEEEEEEECC--C--C-EEEEEETTEEEEEE
T ss_pred             hhccccccCcccccccccccEEEECCCHHH-HHHHHHHHh---hhhEEcCCEEEEEEecCCe--E-EEEEeecCCCceEE
Confidence                      0111    346778999998 778888766   6799999999999987742  4 5765    567899


Q ss_pred             cCEEEEccChhhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCC-CCCcceecc--CCCccceeeEccccc
Q 018455          209 AGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP-NVSNACSGF--GDSLAWTFFDLNKIY  285 (355)
Q Consensus       209 ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~  285 (355)
                      ||+||+|+|++.+.+|++.  ++ ....+.+.++++.++.++++.+++++|.. ...+.+...  +.+..+++++.+ ..
T Consensus       283 ad~vV~a~~~~~~~~ll~~--l~-~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~  358 (478)
T 2ivd_A          283 VAQVVLAAPAHATAKLLRP--LD-DALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHAST-TF  358 (478)
T ss_dssp             CSEEEECSCHHHHHHHHTT--TC-HHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHH-HC
T ss_pred             cCEEEECCCHHHHHHHhhc--cC-HHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcc-cC
Confidence            9999999999999998854  22 22234567888889999999999987631 112212111  112223344422 22


Q ss_pred             ccccCCCceEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          286 DEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       286 ~~~~~~~g~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      +...+++..++.+.+.  .+..+...+++++.+.++++|++++|...  .+....+++|+.+.|.+.||.
T Consensus       359 ~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~p~~~~~~~w~~~~p~~~~g~  426 (478)
T 2ivd_A          359 PFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALAGVTA--RPSFTRVFRWPLGIPQYNLGH  426 (478)
T ss_dssp             GGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHHHHHHHHHCCCS--CCSEEEEEEESSCCBCCBTTH
T ss_pred             CCcCCCCCEEEEEEeCCcCCccccCCCHHHHHHHHHHHHHHHhCCCC--CCcEEEEEECCCcccCCCcCH
Confidence            3222123344443333  22345567899999999999999998643  466677899999999988884

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.90  E-value=3.6e-22  Score=190.88  Aligned_cols=324  Identities=11%  Similarity=0.095  Sum_probs=203.8

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcc---cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWM---KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA   78 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~   78 (355)
                      |.+...++++.++++++|+.....+.   ...++..+|+.+         .+  |.+...+++...+++.++++.+..  
T Consensus        67 ~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~---------~~--p~~~~~~~~~~~~~~~~~~~~~~~--  133 (504)
T 1sez_A           67 NTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPV---------LL--PSNPIDLIKSNFLSTGSKLQMLLE--  133 (504)
T ss_dssp             CCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEESSSSEE---------EC--CSSHHHHHHSSSSCHHHHHHHHTH--
T ss_pred             cccccCcHHHHHHHHHcCCcccceeccCCCceEEEECCeEE---------EC--CCCHHHHhccccCCHHHHHHHhHh--
Confidence            56777889999999999997543222   111222445421         11  222222344456677777664321  


Q ss_pred             HHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH----------H---
Q 018455           79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------L---  145 (355)
Q Consensus        79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~----------~---  145 (355)
                      .+.... ........+++|+.+|++++ ++++.++.+++|++.++++.+++++|+.+++..+....          +   
T Consensus       134 ~~~~~~-~~~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~  211 (504)
T 1sez_A          134 PILWKN-KKLSQVSDSHESVSGFFQRH-FGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSK  211 (504)
T ss_dssp             HHHC-----------CCCBHHHHHHHH-HCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHT
T ss_pred             hhccCc-ccccccCCCCccHHHHHHHH-cCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhh
Confidence            111100 00000124569999999997 88999999999999999999999999987654332210          0   


Q ss_pred             -hcC---------------CCcceEEecCCcchHHHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCe----EEEEEe--
Q 018455          146 -AHQ---------------KNFDLVWCRGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCC----ISDVVC--  202 (355)
Q Consensus       146 -~~~---------------~~~~~~~~~gg~~~~l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~----v~~v~~--  202 (355)
                       ...               ......+++||+++ ++++|++.+   | ++|++|++|++|..+++ +.    ++.|++  
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~-l~~~l~~~l---~~~~i~~~~~V~~I~~~~~-~~~~~~~~~v~~~~  286 (504)
T 1sez_A          212 LSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQT-LTDAICKDL---REDELRLNSRVLELSCSCT-EDSAIDSWSIISAS  286 (504)
T ss_dssp             TC----------CCCSCCSTTCSCBEETTCTHH-HHHHHHTTS---CTTTEETTCCEEEEEEECS-SSSSSCEEEEEEBC
T ss_pred             hcccccccccccchhhccccCCceEeeCcHHHH-HHHHHHhhc---ccceEEcCCeEEEEEecCC-CCcccceEEEEEcC
Confidence             000               01135678999998 777777544   5 79999999999998875 21    135654  


Q ss_pred             -CC---eEEecCEEEEccChhhHHHhhhc---ccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCC--CcceeccCC-
Q 018455          203 -GK---ETYSAGAVVLAVGISTLQELIKN---SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV--SNACSGFGD-  272 (355)
Q Consensus       203 -~g---~~~~ad~VV~a~p~~~~~~l~~~---~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~--~~~~~~~~~-  272 (355)
                       +|   ++++||+||+|+|+..+.+|+..   ++++ ..   .+.++.+.++.++++.|++++|....  .+.++.... 
T Consensus       287 ~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~-~~---~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~  362 (504)
T 1sez_A          287 PHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFL-LN---FIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQ  362 (504)
T ss_dssp             SSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCC-CT---TSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGG
T ss_pred             CCCccceeEECCEEEECCCHHHHHHHhhcccCCccc-HH---HHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCC
Confidence             34   57899999999999999998842   1221 11   25667778899999999988763111  122221111 


Q ss_pred             ----CccceeeEcccccccccCCCceEEEEEee---CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCC
Q 018455          273 ----SLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS  345 (355)
Q Consensus       273 ----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a  345 (355)
                          ....+++. +...+... |.+..+...|.   .+..|..++++++++.++++|++++|..  .++....+++|+++
T Consensus       363 ~~g~~~~~~~~~-s~~~~~~~-p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~--~~p~~~~~~~w~~~  438 (504)
T 1sez_A          363 QHGLKTLGTLFS-SMMFPDRA-PNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAE--GEPTYVNHLYWSKA  438 (504)
T ss_dssp             GGTCCSSEEEEH-HHHCGGGS-CTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBC--SCCSSEEEEEEEEE
T ss_pred             CCCCccceEEee-ccccCCcC-CCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCC--CCCeEEEEeECCCC
Confidence                11112332 33334433 34443323443   2335677899999999999999999863  34677888999999


Q ss_pred             ccccCCCC
Q 018455          346 LTHFFPGS  353 (355)
Q Consensus       346 ~~~~~pg~  353 (355)
                      +|.+.+|+
T Consensus       439 ~p~~~~g~  446 (504)
T 1sez_A          439 FPLYGHNY  446 (504)
T ss_dssp             EECCCTTH
T ss_pred             CCccCcCH
Confidence            99999884

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.88  E-value=1.7e-19  Score=168.43  Aligned_cols=298  Identities=13%  Similarity=0.050  Sum_probs=189.2

Q ss_pred             CCchHHHHHHHhCCCCCCCc-cc-ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHHhccC
Q 018455            7 PFRNIFSLVDELGIKPFTGW-MK-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD   84 (355)
Q Consensus         7 ~y~~~~~l~~elGl~~~~~~-~~-~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   84 (355)
                      .++.+.++++++|+...... .. ..++ .+|+.+.   +      +...        ..+++.++.++.......... 
T Consensus        61 ~~~~~~~l~~~lg~~~~~~~~~~~~~~~-~~g~~~~---~------~~~~--------~~l~~~~~~~~~~~~~~~~~~-  121 (421)
T 3nrn_A           61 EDGPLAHLLRILGAKVEIVNSNPKGKIL-WEGKIFH---Y------RESW--------KFLSVKEKAKALKLLAEIRMN-  121 (421)
T ss_dssp             TSSHHHHHHHHHTCCCCEEECSSSCEEE-ETTEEEE---G------GGGG--------GGCC--------CCHHHHHTT-
T ss_pred             CChHHHHHHHHhCCcceEEECCCCeEEE-ECCEEEE---c------CCch--------hhCCHhHHHHHHHHHHHHHhc-
Confidence            46789999999999743221 11 1222 2454221   1      1111        124455555543322222110 


Q ss_pred             CChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHH
Q 018455           85 NTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKI  164 (355)
Q Consensus        85 ~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l  164 (355)
                           ....++.|+.+|+++++++++.++.++.+++..+++.+++++|+..++..+.... ...   ...+++||+++ +
T Consensus       122 -----~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---g~~~~~gG~~~-l  191 (421)
T 3nrn_A          122 -----KLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAAL-RWG---GPGLIRGGCKA-V  191 (421)
T ss_dssp             -----CCCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHH-HHC---SCEEETTCHHH-H
T ss_pred             -----cCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHh-hcC---CcceecCCHHH-H
Confidence                 1123458999999998777777888999999999999999999998888777642 211   24789999988 8


Q ss_pred             HHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCc
Q 018455          165 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLAS  244 (355)
Q Consensus       165 ~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~  244 (355)
                      +++|++.++++|++|++|++|++|..++  +++  |+++|++++||.||+|+|++.+.+|++.+.++ ....+.+.++.+
T Consensus       192 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~v--V~~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~-~~~~~~~~~~~~  266 (421)
T 3nrn_A          192 IDELERIIMENKGKILTRKEVVEINIEE--KKV--YTRDNEEYSFDVAISNVGVRETVKLIGRDYFD-RDYLKQVDSIEP  266 (421)
T ss_dssp             HHHHHHHHHTTTCEEESSCCEEEEETTT--TEE--EETTCCEEECSEEEECSCHHHHHHHHCGGGSC-HHHHHHHHTCCC
T ss_pred             HHHHHHHHHHCCCEEEcCCeEEEEEEEC--CEE--EEeCCcEEEeCEEEECCCHHHHHHhcCcccCC-HHHHHHHhCCCC
Confidence            8999999999999999999999999876  335  66688899999999999999999998743332 233346677887


Q ss_pred             ccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHhh
Q 018455          245 IDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK  324 (355)
Q Consensus       245 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~ee~~~~~~~~l~~  324 (355)
                      .++++++++++++..  ..++++++.+..+.. +...+...|..++++++++.+.+.-.    ..+.++..+.++++|++
T Consensus       267 ~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~~-i~~~s~~~p~~ap~G~~~~~~~~~~~----~~~~~~~~~~~~~~L~~  339 (421)
T 3nrn_A          267 SEGIKFNLAVPGEPR--IGNTIVFTPGLMING-FNEPSALDKSLAREGYTLIMAHMALK----NGNVKKAIEKGWEELLE  339 (421)
T ss_dssp             CCEEEEEEEEESSCS--SCSSEEECTTSSSCE-EECGGGTCGGGSCTTEEEEEEEEECT----TCCHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEEcCCcc--cCCeEEEcCCcceee-EeccCCCCCCcCCCCceEEEEEEeec----cccHHHHHHHHHHHHHH
Confidence            788999999998854  134555554432322 23334455555433344544433211    22344558999999999


Q ss_pred             hcccCCCceeeeeeEEecCCCccccC
Q 018455          325 CIKDFSTATVMDHKIRRFPKSLTHFF  350 (355)
Q Consensus       325 ~~p~~~~~~~~~~~v~~~~~a~~~~~  350 (355)
                      ++|   ..++  ..+.+|+.++|.+.
T Consensus       340 ~~p---~~~~--~~~~~~~~~~p~~~  360 (421)
T 3nrn_A          340 IFP---EGEP--LLAQVYRDGNPVNR  360 (421)
T ss_dssp             HCT---TCEE--EEEEEC--------
T ss_pred             HcC---CCeE--EEeeeccCCCCccc
Confidence            999   2444  35677888888873

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.86  E-value=3.6e-20  Score=177.61  Aligned_cols=237  Identities=16%  Similarity=0.129  Sum_probs=164.1

Q ss_pred             hcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHH-----HHhcCCCcceEEecCCcchHHHH
Q 018455           92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-----ILAHQKNFDLVWCRGTLREKIFE  166 (355)
Q Consensus        92 ~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~-----~~~~~~~~~~~~~~gg~~~~l~~  166 (355)
                      .++++|+.+|+++++.++.+ +.++++++.+.++.+++++|+.+++.++...     +.....+....+++||+++ +++
T Consensus       142 ~~~~~s~~~~l~~~~~~~~~-~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~-l~~  219 (520)
T 1s3e_A          142 EWDNMTMKELLDKLCWTESA-KQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQ-VSE  219 (520)
T ss_dssp             HHHTSBHHHHHHHHCSSHHH-HHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHH-HHH
T ss_pred             hhhccCHHHHHHhhCCCHHH-HHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHH-HHH
Confidence            46789999999998776654 7789999999999999999999887665431     0111122344678999998 778


Q ss_pred             HHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCcc
Q 018455          167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASI  245 (355)
Q Consensus       167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~  245 (355)
                      ++++.+   |++|++|++|++|..+++  ++. |++ +|++++||+||+|+|+..+.+|++++.++. ...+.++++++.
T Consensus       220 ~l~~~l---g~~i~~~~~V~~i~~~~~--~v~-v~~~~g~~~~ad~VI~a~p~~~l~~l~~~p~lp~-~~~~~i~~~~~~  292 (520)
T 1s3e_A          220 RIMDLL---GDRVKLERPVIYIDQTRE--NVL-VETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPM-MRNQMITRVPLG  292 (520)
T ss_dssp             HHHHHH---GGGEESSCCEEEEECSSS--SEE-EEETTSCEEEESEEEECSCGGGGGGSEEESCCCH-HHHHHTTSCCBC
T ss_pred             HHHHHc---CCcEEcCCeeEEEEECCC--eEE-EEECCCeEEEeCEEEECCCHHHHcceeeCCCCCH-HHHHHHHhCCCc
Confidence            787655   789999999999998774  364 666 678999999999999999988887665532 223356788888


Q ss_pred             cEEEEEEEEccCCCCCCCC-ccee--ccCCCccceeeEcccccccccCCCceEEEEEee--CCCCCCCCCHHHHHHHHHH
Q 018455          246 DVVSVKLWFDKKVTVPNVS-NACS--GFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVS  320 (355)
Q Consensus       246 ~~~~v~l~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~ee~~~~~~~  320 (355)
                      ++.++++.|++++|..... +..+  ..+.++.+ +++.+.. +    ++..++...+.  .+..|..++++++++.+++
T Consensus       293 ~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~-~~d~~~~-~----~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~  366 (520)
T 1s3e_A          293 SVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAY-TLDDTKP-E----GNYAAIMGFILAHKARKLARLTKEERLKKLCE  366 (520)
T ss_dssp             CEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSE-EEECCCT-T----SCSCEEEEEEETHHHHHHTTSCHHHHHHHHHH
T ss_pred             ceEEEEEEeCCCcccCCCCCceeeccCCCCceEE-EeeCCCC-C----CCCCEEEEEccchhhhhhhcCCHHHHHHHHHH
Confidence            9999999999998731111 1111  11233433 4553321 1    11234332222  2346778899999999999


Q ss_pred             HHhhhcccCCCceeeeeeEEecC
Q 018455          321 YLSKCIKDFSTATVMDHKIRRFP  343 (355)
Q Consensus       321 ~l~~~~p~~~~~~~~~~~v~~~~  343 (355)
                      +|+++||......+..+.+++|.
T Consensus       367 ~L~~~~~~~~~~~p~~~~~~~W~  389 (520)
T 1s3e_A          367 LYAKVLGSLEALEPVHYEEKNWC  389 (520)
T ss_dssp             HHHHHHTCGGGGCCSEEEEEEGG
T ss_pred             HHHHHhCccccCCccEEEEEeeC
Confidence            99999975312345556666664

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.85  E-value=4.1e-20  Score=175.23  Aligned_cols=317  Identities=11%  Similarity=0.017  Sum_probs=197.6

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcccceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHHh
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVI   81 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~   81 (355)
                      |.++..++.+.+|+++++ +.............+|+.+         ++  |++...    ..++..++++.+.   .++
T Consensus        65 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~---------~~--P~~~~~----~~l~~~~~~~~~~---~ll  125 (484)
T 4dsg_A           65 HVIFSHYQYFDDVMDWAV-QGWNVLQRESWVWVRGRWV---------PY--PFQNNI----HRLPEQDRKRCLD---ELV  125 (484)
T ss_dssp             CCBCCSBHHHHHHHHHHC-SCEEEEECCCEEEETTEEE---------ES--SGGGCG----GGSCHHHHHHHHH---HHH
T ss_pred             cccccChHHHHHHHHHHh-hhhhhccCceEEEECCEEE---------Ee--Cccchh----hhCCHHHHHHHHH---HHH
Confidence            677889999999999986 3322111111211345421         12  221110    1244455544322   221


Q ss_pred             ccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHH---------HHHHHHHHhcCC---
Q 018455           82 DFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATL---------GILYFIILAHQK---  149 (355)
Q Consensus        82 ~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~---------~~~~~~~~~~~~---  149 (355)
                      +..   ......+++|+.+|+.++ +++++++.++.|++.++|+.+++++|+.+++         ..++..+ ....   
T Consensus       126 ~~~---~~~~~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~-~~~~~~~  200 (484)
T 4dsg_A          126 RSH---ARTYTEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQ-ENRDDLG  200 (484)
T ss_dssp             HHH---HCCCSSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHH-HTCCCCC
T ss_pred             HHH---hccCCCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHh-hcccccC
Confidence            100   001125678999999998 8999999999999999999999999986532         2233322 2111   


Q ss_pred             ---CcceEEec-CCcchHHHHHHHHHHHHcCcEEEcC--ceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH
Q 018455          150 ---NFDLVWCR-GTLREKIFEPWMDSMRTRGCEFLDG--RRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE  223 (355)
Q Consensus       150 ---~~~~~~~~-gg~~~~l~~~l~~~l~~~G~~i~l~--~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~  223 (355)
                         ...+.|+. ||+++ ++++|++.+.+  .+|+++  ++|++|..+++  ++  ...+|+++.||+||+|+|++.+.+
T Consensus       201 ~~~~~~f~yp~~gG~~~-l~~~la~~l~~--~~i~~~~~~~V~~I~~~~~--~v--~~~~G~~~~ad~VI~a~p~~~~~~  273 (484)
T 4dsg_A          201 WGPNATFRFPQRGGTGI-IYQAIKEKLPS--EKLTFNSGFQAIAIDADAK--TI--TFSNGEVVSYDYLISTVPFDNLLR  273 (484)
T ss_dssp             CSTTSEEEEESSSCTHH-HHHHHHHHSCG--GGEEECGGGCEEEEETTTT--EE--EETTSCEEECSEEEECSCHHHHHH
T ss_pred             CCccceEEeecCCCHHH-HHHHHHhhhhh--CeEEECCCceeEEEEecCC--EE--EECCCCEEECCEEEECCCHHHHHH
Confidence               12345664 89998 77888877743  289999  56999998763  23  124678899999999999999999


Q ss_pred             hhhc--ccccCcHHHHhhccCCcccEEEEEEEEccCCCCC-CCCcceeccC--CCccceeeEcccccccccCCCceEEEE
Q 018455          224 LIKN--SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP-NVSNACSGFG--DSLAWTFFDLNKIYDEHKDDSATVIQA  298 (355)
Q Consensus       224 l~~~--~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~l~~  298 (355)
                      ++.+  +.++ ....+.+..+++.++.++++.++++.... .+...++-.+  .++.. +...++.+|...+++.+.+.+
T Consensus       274 ll~~~~~~~~-~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~r-i~~~s~~~p~~ap~g~~~l~~  351 (484)
T 4dsg_A          274 MTKGTGFKGY-DEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYR-ATVFSNYSKYNVPEGHWSLML  351 (484)
T ss_dssp             HEECSSCTTG-GGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTCSCSE-EECGGGTCGGGSCTTEEEEEE
T ss_pred             HhhccCCCCC-HHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCCeEEE-EEeecCCCcccCCCCeEEEEE
Confidence            9864  1121 22223567888999999999999874210 1112222222  22322 222344445443233344433


Q ss_pred             EeeCCCCCCCCCHHHHHHHHHHHHhhhcccCCC-ceeeeeeEEecCCCccccCCCC
Q 018455          299 DFYHANELMPLKDDQVVAKAVSYLSKCIKDFST-ATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       299 ~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~-~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                      -+... +.+..+++++++.++++|.++.. +.. ..+...+++||+.+.|.+.+|+
T Consensus       352 e~~~~-~~~~~~d~~l~~~a~~~L~~~~~-~~~~~~~~~~~v~r~~~~yP~y~~~~  405 (484)
T 4dsg_A          352 EVSES-KYKPVNHSTLIEDCIVGCLASNL-LLPEDLLVSKWHYRIEKGYPTPFIGR  405 (484)
T ss_dssp             EEEEB-TTBCCCTTSHHHHHHHHHHHTTS-CCTTCCEEEEEEEEEEEEEECCBTTH
T ss_pred             EEecC-cCCcCCHHHHHHHHHHHHHHcCC-CCccceEEEEEEEEeCccccCCCccH
Confidence            33322 44577999999999999999853 332 3456678999999999999985

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.85  E-value=1e-19  Score=174.15  Aligned_cols=319  Identities=13%  Similarity=0.062  Sum_probs=199.5

Q ss_pred             cccccCCchHHHHHHHhCCCCCCC-c-cc-ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhh-HH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTG-W-MK-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLP-LM   77 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~-~-~~-~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~-~~   77 (355)
                      |.|+..++++.+|++++|...... . .. ..++ .+|+.+           +.|+....    ..++..+..+... ++
T Consensus        66 h~~~~~~~~v~~l~~e~~~~~~~~~~~~~~~~i~-~~g~~~-----------~~p~~~~~----~~~~~~~~~~~~~~~~  129 (513)
T 4gde_A           66 HVIFSHYKYFDDCLDEALPKEDDWYTHQRISYVR-CQGQWV-----------PYPFQNNI----SMLPKEEQVKCIDGMI  129 (513)
T ss_dssp             CCCCCCBHHHHHHHHHHSCSGGGEEEEECCEEEE-ETTEEE-----------ESSGGGGG----GGSCHHHHHHHHHHHH
T ss_pred             eEecCCCHHHHHHHHHhCCccceeEEecCceEEE-ECCeEe-----------ecchhhhh----hhcchhhHHHHHHHHH
Confidence            889999999999999998864321 1 11 2222 345421           12222111    1123333333221 11


Q ss_pred             HHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHH---------HHHHHhcC
Q 018455           78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGIL---------YFIILAHQ  148 (355)
Q Consensus        78 ~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~---------~~~~~~~~  148 (355)
                      .....     ......+..|+.+|+.+. +++++.+.++.|++.++++.+++++|+.++...+         ...+....
T Consensus       130 ~~~~~-----~~~~~~~~~s~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~  203 (513)
T 4gde_A          130 DAALE-----ARVANTKPKTFDEWIVRM-MGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKT  203 (513)
T ss_dssp             HHHHH-----HHTCCSCCCSHHHHHHHH-HHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCC
T ss_pred             HHHHh-----hhcccccccCHHHHHHHh-hhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhccc
Confidence            11111     111234568999999987 8899999999999999999999999986543211         11111111


Q ss_pred             C-----CcceEE-ecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH
Q 018455          149 K-----NFDLVW-CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ  222 (355)
Q Consensus       149 ~-----~~~~~~-~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~  222 (355)
                      .     .....+ ++||+++ ++++|++.|.+.|++|++|++|++|..++  +++  +..+|+++.||+||+|+|++.+.
T Consensus       204 ~~~~~~~~~~~~~~~gG~~~-l~~~l~~~l~~~g~~i~~~~~V~~I~~~~--~~v--~~~~G~~~~ad~vI~t~P~~~l~  278 (513)
T 4gde_A          204 AGNWGPNATFRFPARGGTGG-IWIAVANTLPKEKTRFGEKGKVTKVNANN--KTV--TLQDGTTIGYKKLVSTMAVDFLA  278 (513)
T ss_dssp             CCSCBTTBEEEEESSSHHHH-HHHHHHHTSCGGGEEESGGGCEEEEETTT--TEE--EETTSCEEEEEEEEECSCHHHHH
T ss_pred             ccccccccceeecccCCHHH-HHHHHHHHHHhcCeeeecceEEEEEEccC--CEE--EEcCCCEEECCEEEECCCHHHHH
Confidence            1     112233 4799999 88999999999999999999999999876  322  33488999999999999999999


Q ss_pred             HhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCC-CCCcceeccCC--CccceeeEcccccccccC---------
Q 018455          223 ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP-NVSNACSGFGD--SLAWTFFDLNKIYDEHKD---------  290 (355)
Q Consensus       223 ~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------  290 (355)
                      +++..+..     ......+++.++..+.+.++...... .....++..+.  ++.. +...++..|...+         
T Consensus       279 ~~l~~~~~-----~~~~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~~~~~~f~R-i~~~~n~sp~~~p~~~~~~~~~  352 (513)
T 4gde_A          279 EAMNDQEL-----VGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPEDNCPFYR-ATIFSNYSPYNQPEASAALPTM  352 (513)
T ss_dssp             HHTTCHHH-----HHHHTTCCEEEEEEEEEEEESSCCTTTTTCCEEECCSTTCSCSE-EECGGGTCGGGSCCTTCCEECC
T ss_pred             HhcCchhh-----HhhhhcccCCceEEEEEEEeccccccccccceeeccCCCCceeE-EEecCCCCcccCCCCCceEEEE
Confidence            98875421     12446788888888999987653311 11111111111  1111 1111111111110         


Q ss_pred             ------------CCceEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455          291 ------------DSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS  353 (355)
Q Consensus       291 ------------~~g~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~  353 (355)
                                  +....+.+.+.  ..++...+++|++++.++++|.++.+....++++..+++|||+|.|+|..|+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~  429 (513)
T 4gde_A          353 QLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLER  429 (513)
T ss_dssp             EETTSCCCSCCSEECCCEEEEEEEEEEBTTBCCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTH
T ss_pred             EeccCCCcccccCCcceEEEEEecccchhccCCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhH
Confidence                        01111111111  2345667899999999999999998765567899999999999999999885

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.83  E-value=1.5e-19  Score=170.40  Aligned_cols=237  Identities=13%  Similarity=0.113  Sum_probs=160.9

Q ss_pred             hhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChh-hccHHHHHHHHHHHH-----HhcCCCcceEEecCCcchHH
Q 018455           91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAE-QCSAAATLGILYFII-----LAHQKNFDLVWCRGTLREKI  164 (355)
Q Consensus        91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~~~~~~~~~-----~~~~~~~~~~~~~gg~~~~l  164 (355)
                      ..++++|+.+|+++++.++.+ +.++++++.+.++.+++ ++|+.+++..+....     .. ..+....+++||+++ +
T Consensus       141 ~~~~~~s~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~gG~~~-l  217 (453)
T 2yg5_A          141 RDLDTVSFKQWLINQSDDAEA-RDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVD-EDFILDKRVIGGMQQ-V  217 (453)
T ss_dssp             HHHHSSBHHHHHHHHCSCHHH-HHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHC-HHHHTCEEETTCTHH-H
T ss_pred             hhhhhccHHHHHHhhcCCHHH-HHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhcc-CCCcceEEEcCChHH-H
Confidence            346789999999998776664 56889998888999999 999998876654310     00 001124678999998 7


Q ss_pred             HHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCc
Q 018455          165 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLAS  244 (355)
Q Consensus       165 ~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~  244 (355)
                      ++.+++.+   |++|++|++|++|..++  ++.+.|+++|++++||+||+|+|+..+.+|++.+.++. ...+.++++++
T Consensus       218 ~~~l~~~l---g~~i~~~~~V~~i~~~~--~~~v~v~~~~~~~~ad~VI~a~p~~~~~~l~~~p~lp~-~~~~~i~~~~~  291 (453)
T 2yg5_A          218 SIRMAEAL---GDDVFLNAPVRTVKWNE--SGATVLADGDIRVEASRVILAVPPNLYSRISYDPPLPR-RQHQMHQHQSL  291 (453)
T ss_dssp             HHHHHHHH---GGGEECSCCEEEEEEET--TEEEEEETTTEEEEEEEEEECSCGGGGGGSEEESCCCH-HHHHHGGGEEE
T ss_pred             HHHHHHhc---CCcEEcCCceEEEEEeC--CceEEEEECCeEEEcCEEEEcCCHHHHhcCEeCCCCCH-HHHHHHhcCCC
Confidence            78787655   78999999999999876  33134777888999999999999999988877665532 22235677778


Q ss_pred             ccEEEEEEEEccCCCCCCC-CcceeccCCCccceeeEcccccccccCCCceEEEEEee--CCCCCCCCCHHHHHHHHHHH
Q 018455          245 IDVVSVKLWFDKKVTVPNV-SNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSY  321 (355)
Q Consensus       245 ~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~ee~~~~~~~~  321 (355)
                      .++.++++.|++++|.... .+..+..+.++.+ +++.+.  ++   +...++.+.+.  .++.|..++++++++.++++
T Consensus       292 ~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~-~~~~~~--~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  365 (453)
T 2yg5_A          292 GLVIKVHAVYETPFWREDGLSGTGFGASEVVQE-VYDNTN--HE---DDRGTLVAFVSDEKADAMFELSAEERKATILAS  365 (453)
T ss_dssp             CCEEEEEEEESSCGGGGGTEEEEEECTTSSSCE-EEECCC--TT---CSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             cceEEEEEEECCCCCCCCCCCceeecCCCCeEE-EEeCCC--CC---CCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHH
Confidence            8899999999999873111 1111222334433 455331  21   11233332222  23456677899999999999


Q ss_pred             HhhhcccCCCceeeeeeEEecC
Q 018455          322 LSKCIKDFSTATVMDHKIRRFP  343 (355)
Q Consensus       322 l~~~~p~~~~~~~~~~~v~~~~  343 (355)
                      |+++||.. ...++.+.+.+|.
T Consensus       366 L~~~~~~~-~~~p~~~~~~~W~  386 (453)
T 2yg5_A          366 LARYLGPK-AEEPVVYYESDWG  386 (453)
T ss_dssp             HHHHHCGG-GGCCSEEEECCTT
T ss_pred             HHHHhCcc-CCCccEEEEeecC
Confidence            99999752 1244555566664

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.77  E-value=2.5e-17  Score=156.87  Aligned_cols=243  Identities=13%  Similarity=0.093  Sum_probs=167.2

Q ss_pred             hhhcccccHHHHHHHhC--CCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcC-----CCcceEEecCCcch
Q 018455           90 WRKYDSITARELFKQFG--CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ-----KNFDLVWCRGTLRE  162 (355)
Q Consensus        90 ~~~~d~~s~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~-----~~~~~~~~~gg~~~  162 (355)
                      +..++++|+.+|+++.+  +++.. +.++++++...++.+++++|+..++..+...  .+.     .......++||+++
T Consensus       180 ~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gG~~~  256 (495)
T 2vvm_A          180 FRKYDEMSYSERIDQIRDELSLNE-RSSLEAFILLCSGGTLENSSFGEFLHWWAMS--GYTYQGCMDCLMSYKFKDGQSA  256 (495)
T ss_dssp             HHHHHTSBHHHHHHHHGGGCCHHH-HHHHHHHHHHHHSSCTTTSBHHHHHHHHHHT--TSSHHHHHHHHHSEEETTCHHH
T ss_pred             hhhhhhhhHHHHHHHhhccCCHHH-HHHHHHHHHHhcCCCcchhhHHHHHHHHHHc--CCCHHHHHhhhceEEeCCCHHH
Confidence            34578899999999987  77775 5789999999999999999999887765431  000     01124567899998


Q ss_pred             HHHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhcccccCcHHHHhhc
Q 018455          163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVL  240 (355)
Q Consensus       163 ~l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~  240 (355)
                       +++.|.+.+.+.| ++|+++++|++|+.++++  + .|++ +|++++||+||+|+|+..+.+|.+.+.++. ...+.++
T Consensus       257 -l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~--v-~v~~~~g~~~~ad~vI~a~~~~~l~~i~~~p~lp~-~~~~ai~  331 (495)
T 2vvm_A          257 -FARRFWEEAAGTGRLGYVFGCPVRSVVNERDA--A-RVTARDGREFVAKRVVCTIPLNVLSTIQFSPALST-ERISAMQ  331 (495)
T ss_dssp             -HHHHHHHHHHTTTCEEEESSCCEEEEEECSSS--E-EEEETTCCEEEEEEEEECCCGGGGGGSEEESCCCH-HHHHHHH
T ss_pred             -HHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE--E-EEEECCCCEEEcCEEEECCCHHHHhheeeCCCCCH-HHHHHHH
Confidence             8899999999888 999999999999987743  5 4766 567899999999999999998876665532 2233567


Q ss_pred             cCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeCCCCCCCCCHHHHHHHHHH
Q 018455          241 NLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVS  320 (355)
Q Consensus       241 ~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~ee~~~~~~~  320 (355)
                      .+.+.++.++++.|++++|. . ...+...+.++.+ +++.+.. +    ++..++.+ |.....  .+++++..+.+++
T Consensus       332 ~~~~~~~~kv~l~~~~~~~~-~-~~g~~~~~~~~~~-~~~~~~~-~----~~~~vl~~-~~~~~~--~~~~~e~~~~~~~  400 (495)
T 2vvm_A          332 AGHVSMCTKVHAEVDNKDMR-S-WTGIAYPFNKLCY-AIGDGTT-P----AGNTHLVC-FGNSAN--HIQPDEDVRETLK  400 (495)
T ss_dssp             HCCCCCCEEEEEEESCGGGG-G-EEEEECSSCSSCE-EEEEEEC-T----TSCEEEEE-EECSTT--CCCTTTCHHHHHH
T ss_pred             hcCCCceeEEEEEECCccCC-C-ceeEecCCCCcEE-EecCCCC-C----CCCeEEEE-EeCccc--cCCCHHHHHHHHH
Confidence            77888899999999998762 2 1111112334443 3432211 1    12234433 443222  2456667788999


Q ss_pred             HHhhhcccCCCceeeeeeEEec---CC---CccccCCCC
Q 018455          321 YLSKCIKDFSTATVMDHKIRRF---PK---SLTHFFPGS  353 (355)
Q Consensus       321 ~l~~~~p~~~~~~~~~~~v~~~---~~---a~~~~~pg~  353 (355)
                      +|++++|..  .++....+++|   |+   +.+.+.||.
T Consensus       401 ~L~~~~~~~--~~~~~~~~~~W~~dp~~~g~y~~~~~g~  437 (495)
T 2vvm_A          401 AVGQLAPGT--FGVKRLVFHNWVKDEFAKGAWFFSRPGM  437 (495)
T ss_dssp             HHHTTSTTS--CCEEEEEECCTTTCTTTSSSSCCCCTTH
T ss_pred             HHHHhcCCC--CCceEEEEeEcCCCCCCCCCccCcCCCc
Confidence            999999863  34556666666   33   444455663

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.69  E-value=3.8e-16  Score=145.84  Aligned_cols=210  Identities=14%  Similarity=0.171  Sum_probs=144.1

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCccc-ceeecCC-Cc---eecccccccCCCCCCCccccccccCCCCCHHhhhchhhH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYSEE-GL---EVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPL   76 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~~-~~~~~~~-g~---~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~   76 (355)
                      |.++.++.+++++|.++|+.....|.. ...|... +.   ......+     .+.|.+...+++.+.+++.+|.++.++
T Consensus        93 P~~l~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~-----~~VPss~~e~~~~~lLs~~eK~~l~kF  167 (475)
T 3p1w_A           93 PKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFI-----HKVPATDMEALVSPLLSLMEKNRCKNF  167 (475)
T ss_dssp             CCBEETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEE-----EECCCSHHHHHTCTTSCHHHHHHHHHH
T ss_pred             CeEeecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCce-----EeCCCCHHHHhhccCCCHHHHHHHHHH
Confidence            567889999999999999998777763 2333211 10   0000011     123445444668899999999998887


Q ss_pred             HHHHhccCCC-hhhhh--hcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH--HhcCCCc
Q 018455           77 MAAVIDFDNT-DVAWR--KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNF  151 (355)
Q Consensus        77 ~~~~~~~~~~-~~~~~--~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~--~~~~~~~  151 (355)
                      +..+.++... ...+.  ++++.|+.+|++++++++.+++.++.++... ...+..+.|+..++..+..+.  +...+++
T Consensus       168 L~~l~~~~~~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~-~~~~~~~~~a~~~l~ri~~y~~Sl~~yg~s  246 (475)
T 3p1w_A          168 YQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALY-LNDDYLKQPAYLTLERIKLYMQSISAFGKS  246 (475)
T ss_dssp             HHHHHHCCTTCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCC-SSSGGGGSBHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHhhhhccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhh-cCCCcccCCHHHHHHHHHHHHHHHhhcCCC
Confidence            7776654311 11222  2468999999999999999887544443222 223455678877776655442  1222346


Q ss_pred             ceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      .+.|++||+++ +++++++.+++.|++|+++++|++|..+++ |++++|++ +|++++||.||+|....
T Consensus       247 ~~~yp~gG~~~-L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~-g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          247 PFIYPLYGLGG-IPEGFSRMCAINGGTFMLNKNVVDFVFDDD-NKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             SEEEETTCTTH-HHHHHHHHHHHC--CEESSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             ceEEECCCHHH-HHHHHHHHHHHcCCEEEeCCeEEEEEEecC-CeEEEEEECCCcEEECCEEEECCCcc
Confidence            78899999998 889999999999999999999999998333 56888988 56789999999998654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.66  E-value=2.6e-15  Score=136.07  Aligned_cols=185  Identities=10%  Similarity=0.118  Sum_probs=126.5

Q ss_pred             EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhcc--cc
Q 018455          154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNS--IL  230 (355)
Q Consensus       154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~~--~l  230 (355)
                      ....+|+++ +.+.+++.+   |++|+++++|++|+.++++  + .|++ +|++++||.||+|+|++.+.+|+.+.  .+
T Consensus       105 ~~~~~g~~~-l~~~l~~~~---g~~i~~~~~V~~i~~~~~~--~-~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l  177 (342)
T 3qj4_A          105 FVAPQGISS-IIKHYLKES---GAEVYFRHRVTQINLRDDK--W-EVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLI  177 (342)
T ss_dssp             EECTTCTTH-HHHHHHHHH---TCEEESSCCEEEEEECSSS--E-EEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHS
T ss_pred             eecCCCHHH-HHHHHHHhc---CCEEEeCCEEEEEEEcCCE--E-EEEECCCCEEEcCEEEECCCHHHHHHHhccccccc
Confidence            345788888 666666554   8999999999999998753  4 5766 56778999999999999999988642  22


Q ss_pred             cCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCccee-ccCCCccceeeEccccccccc-CCCceEEEEEee--CCCCC
Q 018455          231 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACS-GFGDSLAWTFFDLNKIYDEHK-DDSATVIQADFY--HANEL  306 (355)
Q Consensus       231 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~~~--~~~~~  306 (355)
                      + ....+.+..+++.++.++++.|+++++...+...++ ..+..++|++++ +.. +... .+++..+.+...  .++++
T Consensus       178 ~-~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~k-~~r~~~~~~~~~v~~~~~~~~~~~  254 (342)
T 3qj4_A          178 S-ECQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSID-NKK-RNIESSEIGPSLVIHTTVPFGVTY  254 (342)
T ss_dssp             C-HHHHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEH-HHH-TTCCCC-CCCEEEEEECHHHHHHT
T ss_pred             C-HHHHHHHhcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEcc-ccC-CCCCCCCCCceEEEECCHHHHHHh
Confidence            2 122346788999999999999998755322222222 222335664343 332 3211 123333322222  22456


Q ss_pred             CCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccC
Q 018455          307 MPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF  350 (355)
Q Consensus       307 ~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~  350 (355)
                      .+++++++++.++++|++++|..  .+++++.++||++|+|++.
T Consensus       255 ~~~~~~~~~~~~~~~l~~~~g~~--~~p~~~~v~rW~~a~p~~~  296 (342)
T 3qj4_A          255 LEHSIEDVQELVFQQLENILPGL--PQPIATKCQKWRHSQVTNA  296 (342)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCSC--CCCSEEEEEEETTCSBSSC
T ss_pred             hcCCHHHHHHHHHHHHHHhccCC--CCCceeeeccccccccccc
Confidence            78899999999999999999854  3568899999999999883

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.64  E-value=2.1e-14  Score=136.86  Aligned_cols=229  Identities=11%  Similarity=0.069  Sum_probs=124.9

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHHHHHc
Q 018455           96 ITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTR  175 (355)
Q Consensus        96 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~  175 (355)
                      .|+.+++.++..++.+ +.++.... ..++.+|.+.++.+.+.  ...  ...  ....+++||+++ ++++|++.++++
T Consensus       164 ~~~~~~~~~~~~~~~l-~~~l~~~~-~~~g~~p~~~~~~~~~~--~~~--~~~--~G~~~p~GG~~~-l~~aL~~~~~~~  234 (501)
T 4dgk_A          164 RSVYSKVASYIEDEHL-RQAFSFHS-LLVGGNPFATSSIYTLI--HAL--ERE--WGVWFPRGGTGA-LVQGMIKLFQDL  234 (501)
T ss_dssp             HHHHHHHHTTCCCHHH-HHHHHHHH-HHHHSCC--CCCTHHHH--HHH--HSC--CCEEEETTHHHH-HHHHHHHHHHHT
T ss_pred             ccHHHHHHHHhccHHH-Hhhhhhhh-cccCCCcchhhhhhhhh--hhh--hcc--CCeEEeCCCCcc-hHHHHHHHHHHh
Confidence            4788888887555554 55554433 24556667666654432  221  222  235789999999 889999999999


Q ss_pred             CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhhhcccccCcHHHHhhccCC-cccEEEEEE
Q 018455          176 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIKNSILCNREEFLKVLNLA-SIDVVSVKL  252 (355)
Q Consensus       176 G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~~~~~l~~~~~~~~~~~l~-~~~~~~v~l  252 (355)
                      |++|++|++|++|+.++  +++++|++ +|++++||.||++++++.+ ..|++..+.+ ......+++.. ..+.+++++
T Consensus       235 Gg~I~~~~~V~~I~~~~--~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~~~s~~~~~~  311 (501)
T 4dgk_A          235 GGEVVLNARVSHMETTG--NKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAA-VKQSNKLQTKRMSNSLFVLYF  311 (501)
T ss_dssp             TCEEECSCCEEEEEEET--TEEEEEEETTSCEEECSCEEECCC----------------------------CCEEEEEEE
T ss_pred             CCceeeecceeEEEeeC--CeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccc-hhhhhhhhccccCCceeEEEe
Confidence            99999999999999988  56888988 7899999999999988755 5677664432 12222444444 345778899


Q ss_pred             EEccCCCCCCCCcceeccCC--Cc------------cceeeE-cccccccccCCCc-eEEEE-EeeCCCCCCCC----CH
Q 018455          253 WFDKKVTVPNVSNACSGFGD--SL------------AWTFFD-LNKIYDEHKDDSA-TVIQA-DFYHANELMPL----KD  311 (355)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~-~~~~~~~~~~~~g-~~l~~-~~~~~~~~~~~----~~  311 (355)
                      +++.+......++++++.+.  .+            ...+.. .+...|..+ |+| ..+.+ +..+...+...    ..
T Consensus       312 ~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~a-p~G~~~~~~~~~~p~~~~~~~~~~~~~  390 (501)
T 4dgk_A          312 GLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLA-PEGCGSYYVLAPVPHLGTANLDWTVEG  390 (501)
T ss_dssp             EESSCCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGS-STTCEEEEEEEEECCTTTSCCCHHHHH
T ss_pred             cccCCccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcC-CCCCceEEEEEecCccccccccHHHHH
Confidence            99887653222333333210  00            011111 122233344 344 33322 22232222222    24


Q ss_pred             HHHHHHHHHHHhhh-cccCCCceeeeee
Q 018455          312 DQVVAKAVSYLSKC-IKDFSTATVMDHK  338 (355)
Q Consensus       312 ee~~~~~~~~l~~~-~p~~~~~~~~~~~  338 (355)
                      +++.+.+++.|++. +|++++ .++..+
T Consensus       391 ~~~~~~vl~~l~~~~~P~~~~-~i~~~~  417 (501)
T 4dgk_A          391 PKLRDRIFAYLEQHYMPGLRS-QLVTHR  417 (501)
T ss_dssp             HHHHHHHHHHHHHHTCTTHHH-HEEEEE
T ss_pred             HHHHHHHHHHHHHhhCCChHH-ceEEEE
Confidence            67788899999875 588763 444443

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.59  E-value=1.4e-14  Score=137.16  Aligned_cols=249  Identities=12%  Similarity=0.078  Sum_probs=148.6

Q ss_pred             cccccHHH--HHHHhCC--CHHHHHHHHHHHHH-hhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHH
Q 018455           93 YDSITARE--LFKQFGC--SERLYRNVIGPLVQ-VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEP  167 (355)
Q Consensus        93 ~d~~s~~~--~l~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~  167 (355)
                      .+++|+.+  |+.+...  .....+.++++++. ..++.+++..|+..+... ..+ ........+.+.+||+++ +.+.
T Consensus       135 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~-~~~~~~~~~~~~~gG~~~-l~~~  211 (472)
T 1b37_A          135 RDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPL-ATF-SDFGDDVYFVADQRGYEA-VVYY  211 (472)
T ss_dssp             TTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTSSC-HHH-HHHCSEEEEECCTTCTTH-HHHH
T ss_pred             chhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccccccchhhcccc-ccc-cccCCceeeeecCCcHHH-HHHH
Confidence            46777764  6665421  11123456666653 345777888776433211 111 111111122234799998 7788


Q ss_pred             HHHHHHHc--------CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhh--hcccccCcHHH
Q 018455          168 WMDSMRTR--------GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI--KNSILCNREEF  236 (355)
Q Consensus       168 l~~~l~~~--------G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~--~~~~l~~~~~~  236 (355)
                      |++.+.+.        |++|+++++|++|..++++  +. |++ +|++++||+||+|+|+..+.+++  +.+.++ ....
T Consensus       212 l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~--v~-v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp-~~~~  287 (472)
T 1b37_A          212 LAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG--VT-VKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLP-TWKV  287 (472)
T ss_dssp             HHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSC--EE-EEETTSCEEEESEEEECSCHHHHHTTSSEEESCCC-HHHH
T ss_pred             HHHhccccccccccccccEEEcCCEEEEEEEcCCc--EE-EEECCCCEEEcCEEEEecCHHHhccCCeeECCCCC-HHHH
Confidence            88877654        6799999999999998753  64 766 67799999999999999998754  344443 2223


Q ss_pred             HhhccCCcccEEEEEEEEccCCCCCCC-Cccee-ccC-CCccceeeEcccccccccCCCceEEEEEeeC--CCCCCCCCH
Q 018455          237 LKVLNLASIDVVSVKLWFDKKVTVPNV-SNACS-GFG-DSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKD  311 (355)
Q Consensus       237 ~~~~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~~~~~~~  311 (355)
                      +.++++.+.++.++++.|++++|.... .+.+. ... ..... ++..  ..+. . +++.++.+.+..  +..|..+++
T Consensus       288 ~ai~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~-p~~~~l~~~~~~~~a~~~~~~~~  362 (472)
T 1b37_A          288 RAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYG-VWQE--FEKQ-Y-PDANVLLVTVTDEESRRIEQQSD  362 (472)
T ss_dssp             HHHHHSEEECEEEEEEECSSCCSCCSTTCSEEEECCSSTTSSC-EEEE--CTTT-S-TTCCEEEEEEEHHHHHHHHTSCH
T ss_pred             HHHHhcCCcceeEEEEECCCcCCCCCCCcceEEecccCCccce-eeec--ccCC-C-CCCCEEEEEechHHHHHHHhCCH
Confidence            456777888899999999999884211 11111 111 11111 2221  1111 1 233444333331  224556799


Q ss_pred             HHHHHHHHHHHhhhcccCCCceeeeeeEEec------CCCccccCCCC
Q 018455          312 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRF------PKSLTHFFPGS  353 (355)
Q Consensus       312 ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~------~~a~~~~~pg~  353 (355)
                      +++++.++++|+++||+....+++...+.+|      ..+.+.+.||.
T Consensus       363 ~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~  410 (472)
T 1b37_A          363 EQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGV  410 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTC
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCC
Confidence            9999999999999998754344555666666      33444445664

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.58  E-value=2.6e-13  Score=129.20  Aligned_cols=216  Identities=14%  Similarity=0.076  Sum_probs=132.1

Q ss_pred             hhcccccHHHHHHHhC-CCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHH
Q 018455           91 RKYDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWM  169 (355)
Q Consensus        91 ~~~d~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~  169 (355)
                      ..+|+.|+.+|+++.+ .+...++.+ ..++....   ....+....+.....  ..  .......++||+++ ++++|+
T Consensus       178 ~~~~~~s~~~~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~--~~--~~~~~~~~~gG~~~-l~~~l~  248 (498)
T 2iid_A          178 NKYDTYSTKEYLIKEGDLSPGAVDMI-GDLLNEDS---GYYVSFIESLKHDDI--FA--YEKRFDEIVDGMDK-LPTAMY  248 (498)
T ss_dssp             HHHTTSBHHHHHHHTSCCCHHHHHHH-HHHTTCGG---GTTSBHHHHHHHHHH--HT--TCCCEEEETTCTTH-HHHHHH
T ss_pred             HHhhhhhHHHHHHHccCCCHHHHHHH-HHhcCccc---chhHHHHHHHHHHhc--cc--cCcceEEeCCcHHH-HHHHHH
Confidence            4568899999999865 466665533 22221100   011122211111111  11  12345678999998 778888


Q ss_pred             HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe----EEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCc
Q 018455          170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE----TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLAS  244 (355)
Q Consensus       170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~----~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~  244 (355)
                      +.+.+   +|++|++|++|..++++  + .|++ +|+    +++||+||+|+|+..+.+|.+.|+++. ...+.++++++
T Consensus       249 ~~l~~---~i~~~~~V~~I~~~~~~--v-~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p~Lp~-~~~~ai~~l~~  321 (498)
T 2iid_A          249 RDIQD---KVHFNAQVIKIQQNDQK--V-TVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLP-KKAHALRSVHY  321 (498)
T ss_dssp             HHTGG---GEESSCEEEEEEECSSC--E-EEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCH-HHHHHHHHCCE
T ss_pred             Hhccc---ccccCCEEEEEEECCCe--E-EEEEecCCcccceEEeCEEEECCChHHHhheecCCCCCH-HHHHHHHhCCC
Confidence            77643   89999999999998743  5 4655 443    589999999999998888876665542 22335678888


Q ss_pred             ccEEEEEEEEccCCCCCCC-CcceeccCCCccceeeEcccccccccCCCceEEEEEee--CCCCCCCCCHHHHHHHHHHH
Q 018455          245 IDVVSVKLWFDKKVTVPNV-SNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSY  321 (355)
Q Consensus       245 ~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~ee~~~~~~~~  321 (355)
                      .++.++++.|++++|.... .+.....+.+..++++. +...|    ++..++.....  .+..+..++++++.+.++++
T Consensus       322 ~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-s~~~p----~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~  396 (498)
T 2iid_A          322 RSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYP-NHNFT----NGVGVIIAYGIGDDANFFQALDFKDCADIVFND  396 (498)
T ss_dssp             ECEEEEEEEESSCGGGGGTCCSSEEEESSTTCEEECC-SSCCT----TSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCccCCCccCCcccCCCCcceEEEC-CCCCC----CCCcEEEEEeCCccHhhhhcCCHHHHHHHHHHH
Confidence            8999999999999883210 01111112222222222 21112    12234333222  23457788999999999999


Q ss_pred             Hhhhcc
Q 018455          322 LSKCIK  327 (355)
Q Consensus       322 l~~~~p  327 (355)
                      |+++++
T Consensus       397 L~~~~g  402 (498)
T 2iid_A          397 LSLIHQ  402 (498)
T ss_dssp             HHHHHT
T ss_pred             HHHHcC
Confidence            999997

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=99.55  E-value=1.2e-13  Score=132.80  Aligned_cols=221  Identities=12%  Similarity=0.110  Sum_probs=144.7

Q ss_pred             CchHHHHHHHhCCCCCCCccc-ceeec-CCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHHhccCC
Q 018455            8 FRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDN   85 (355)
Q Consensus         8 y~~~~~l~~elGl~~~~~~~~-~~~~~-~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   85 (355)
                      ...+.+|+.++|+.....|.. ..+|. .+|+.      .   .+  |.+...+++.+.+++.+|.++.+++.....+..
T Consensus       236 ~g~lv~LL~~sgV~~yLEFk~v~~~y~~~~G~~------~---~V--Pas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~~  304 (650)
T 1vg0_A          236 RGLLIDLLIKSNVSRYAEFKNITRILAFREGTV------E---QV--PCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE  304 (650)
T ss_dssp             SSHHHHHHHHHTGGGGCCEEECCEEEEESSSSE------E---EC--CCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG
T ss_pred             CcHHHHHHHHcCCcceeeEEEccceEEecCCCE------e---EC--CCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhcc
Confidence            445889999999987777653 23332 44542      1   12  334444667789999999998877766555432


Q ss_pred             ChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH--HhcCCCcceEEecCCcchH
Q 018455           86 TDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREK  163 (355)
Q Consensus        86 ~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~--~~~~~~~~~~~~~gg~~~~  163 (355)
                      .+..+..++..|+.+|+++++.++.+++.+.. .+ +++..  +..++...+..+..++  +...+.....|++||+++ 
T Consensus       305 ~p~~~~~~d~~S~~d~L~~~~ls~~L~~~L~~-~l-al~~~--~~~pa~~~l~~i~~~l~sl~~yg~sg~~yp~GG~g~-  379 (650)
T 1vg0_A          305 HPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLH-SI-AMTSE--TTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGE-  379 (650)
T ss_dssp             CHHHHHTTTTSBHHHHHTTSSSCHHHHHHHHH-HT-TC--C--CSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTH-
T ss_pred             ChHHHhhhccCCHHHHHHHhCCCHHHHHHHHH-HH-hccCC--CCCchhHHHHHHHHHHHHHHhhccCceEEeCCchhH-
Confidence            23345577899999999999899887664433 22 23322  2234444433233221  122223467899999999 


Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccC
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL  242 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l  242 (355)
                      |+++|++.++..|++|+++++|++|..+++.|++++|++ +|++++||.||++  +..    ++...         ..+.
T Consensus       380 L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~--~~~----lp~~~---------~~~~  444 (650)
T 1vg0_A          380 LPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE--DSY----LSENT---------CSRV  444 (650)
T ss_dssp             HHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE--GGG----BCTTT---------TTTC
T ss_pred             HHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEC--hhh----cCHhH---------hccc
Confidence            899999999999999999999999998763135778876 5899999999992  221    11100         1122


Q ss_pred             CcccEEEEEEEEccCCC
Q 018455          243 ASIDVVSVKLWFDKKVT  259 (355)
Q Consensus       243 ~~~~~~~v~l~~~~~~~  259 (355)
                      .+..+..+.+++++++.
T Consensus       445 ~~~~v~R~i~i~~~pi~  461 (650)
T 1vg0_A          445 QYRQISRAVLITDGSVL  461 (650)
T ss_dssp             CCEEEEEEEEEESSCSS
T ss_pred             cccceEEEEEEecCCCC
Confidence            34467778888888764

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.46  E-value=5.3e-12  Score=117.61  Aligned_cols=213  Identities=12%  Similarity=0.119  Sum_probs=127.3

Q ss_pred             cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHH-HHhcCCCcceEEecCCcchHHHHHHHHH
Q 018455           93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-ILAHQKNFDLVWCRGTLREKIFEPWMDS  171 (355)
Q Consensus        93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~-~~~~~~~~~~~~~~gg~~~~l~~~l~~~  171 (355)
                      .+.+|+.+|+++++.+ .+.+.+..|++.+.++ +++++|+.+++.++... +.....+ ....+.||+++ +++++.+.
T Consensus       140 ~~~~s~~~~l~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~-l~~~l~~~  215 (424)
T 2b9w_A          140 DLMLPFDEFLALNGCE-AARDLWINPFTAFGYG-HFDNVPAAYVLKYLDFVTMMSFAKG-DLWTWADGTQA-MFEHLNAT  215 (424)
T ss_dssp             GGGSBHHHHHHHTTCG-GGHHHHTTTTCCCCCC-CTTTSBHHHHHHHSCHHHHHHHHHT-CCBCCTTCHHH-HHHHHHHH
T ss_pred             hhccCHHHHHHhhCcH-HHHHHHHHHHHhhccC-ChHhcCHHHHHHhhhHhhhhcccCC-ceEEeCChHHH-HHHHHHHh
Confidence            4568999999998765 4667777888887775 67899998876544321 0110111 12456799888 66777654


Q ss_pred             HHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCcccEEEEE
Q 018455          172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVK  251 (355)
Q Consensus       172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~  251 (355)
                      +   +.+|++|++|++|..+++  ++ .|++++++++||+||+|+|++.+.++++..+    .....+.++.+.++. +.
T Consensus       216 l---~~~v~~~~~V~~i~~~~~--~v-~v~~~~g~~~ad~Vv~a~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~-~~  284 (424)
T 2b9w_A          216 L---EHPAERNVDITRITREDG--KV-HIHTTDWDRESDVLVLTVPLEKFLDYSDADD----DEREYFSKIIHQQYM-VD  284 (424)
T ss_dssp             S---SSCCBCSCCEEEEECCTT--CE-EEEESSCEEEESEEEECSCHHHHTTSBCCCH----HHHHHHTTCEEEEEE-EE
T ss_pred             h---cceEEcCCEEEEEEEECC--EE-EEEECCCeEEcCEEEECCCHHHHhhccCCCH----HHHHHHhcCCcceeE-EE
Confidence            4   568999999999998764  36 4777544599999999999998766654311    111234555554433 33


Q ss_pred             EEEccCCCCCCCCcceeccC--C-CccceeeEcccccccccCCCceEEEEEe-eCCCCCCCCCHHHHHHHHHHHHhhhcc
Q 018455          252 LWFDKKVTVPNVSNACSGFG--D-SLAWTFFDLNKIYDEHKDDSATVIQADF-YHANELMPLKDDQVVAKAVSYLSKCIK  327 (355)
Q Consensus       252 l~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~~~~ee~~~~~~~~l~~~~p  327 (355)
                      +.+...++.   ...+++.+  . ..++.+++.... ++   .+..++.+.. .....+...+++++++.++++|+++.+
T Consensus       285 ~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~  357 (424)
T 2b9w_A          285 ACLVKEYPT---ISGYVPDNMRPERLGHVMVYYHRW-AD---DPHQIITTYLLRNHPDYADKTQEECRQMVLDDMETFGH  357 (424)
T ss_dssp             EEEESSCCS---SEEECGGGGSGGGTTSCCEEEECC-TT---CTTSCEEEEEECCBTTBCCCCHHHHHHHHHHHHHHTTC
T ss_pred             EEEeccCCc---ccccccCCCCCcCCCcceEEeeec-CC---CCceEEEEEeccCCCcccccChHHHHHHHHHHHHHcCC
Confidence            334333321   11222211  0 112233432222 21   1223322222 233456677899999999999998543

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.45  E-value=7.7e-12  Score=116.71  Aligned_cols=225  Identities=13%  Similarity=0.104  Sum_probs=141.5

Q ss_pred             hhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcC-----CCcceEEecCCcchHHH
Q 018455           91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ-----KNFDLVWCRGTLREKIF  165 (355)
Q Consensus        91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~-----~~~~~~~~~gg~~~~l~  165 (355)
                      ..+| .|+.+|+.+.+.++.. ..++.+++...++.+++++|+..++.++...  ...     .... ..+.+|++. +.
T Consensus       137 ~~~d-~s~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~g~~~-l~  210 (431)
T 3k7m_X          137 EDLD-IPLNEYVDKLDLPPVS-RQFLLAWAWNMLGQPADQASALWMLQLVAAH--HYSILGVVLSLD-EVFSNGSAD-LV  210 (431)
T ss_dssp             GGGC-SBHHHHHHHHTCCHHH-HHHHHHHHHHHHSSCTTTSBHHHHHHHHHHT--TSCHHHHHHTCC-EEETTCTHH-HH
T ss_pred             hhhc-CCHHHHHHhcCCCHHH-HHHHHHHHHHhcCCChhhhhHHHHHHHHHhc--CCccceeecchh-hhcCCcHHH-HH
Confidence            3466 9999999998777665 4578888999999999999999887766532  000     0011 156788776 43


Q ss_pred             HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCc
Q 018455          166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLAS  244 (355)
Q Consensus       166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~  244 (355)
                      +.+   +++.| +|++|++|++|+.++++  + .|++ +|++++||+||+|+|+..++++...|.++. .....+..+.+
T Consensus       211 ~~~---~~~~g-~i~~~~~V~~i~~~~~~--v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~-~~~~~~~~~~~  282 (431)
T 3k7m_X          211 DAM---SQEIP-EIRLQTVVTGIDQSGDV--V-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPE-RRRSVIEEGHG  282 (431)
T ss_dssp             HHH---HTTCS-CEESSCCEEEEECSSSS--E-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCH-HHHHHHHHCCC
T ss_pred             HHH---HhhCC-ceEeCCEEEEEEEcCCe--E-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCCH-HHHHHHHhCCC
Confidence            333   34556 99999999999987753  5 4766 577899999999999999988876665532 21224555666


Q ss_pred             ccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHhh
Q 018455          245 IDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK  324 (355)
Q Consensus       245 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~ee~~~~~~~~l~~  324 (355)
                      ....++.+.|+++++     + +++.+.+....+++.....     .++.++ +.+...+.+...+.+    .+.+.|++
T Consensus       283 ~~~~kv~~~~~~~~~-----~-i~~~~d~~~~~~~~~~~~~-----~~~~~l-~~~~~g~~~~~~~~~----~~~~~l~~  346 (431)
T 3k7m_X          283 GQGLKILIHVRGAEA-----G-IECVGDGIFPTLYDYCEVS-----ESERLL-VAFTDSGSFDPTDIG----AVKDAVLY  346 (431)
T ss_dssp             CCEEEEEEEEESCCT-----T-EEEEBSSSSSEEEEEEECS-----SSEEEE-EEEEETTTCCTTCHH----HHHHHHHH
T ss_pred             cceEEEEEEECCCCc-----C-ceEcCCCCEEEEEeCcCCC-----CCCeEE-EEEeccccCCCCCHH----HHHHHHHH
Confidence            678999999998875     2 3332222222245433220     123333 334433333332332    35667888


Q ss_pred             hcccCCCceeeeeeEEecCCC
Q 018455          325 CIKDFSTATVMDHKIRRFPKS  345 (355)
Q Consensus       325 ~~p~~~~~~~~~~~v~~~~~a  345 (355)
                      ++|++.......+.|...|++
T Consensus       347 ~~~~~~~~~~~~~~W~~d~~~  367 (431)
T 3k7m_X          347 YLPEVEVLGIDYHDWIADPLF  367 (431)
T ss_dssp             HCTTCEEEEEECCCTTTCTTT
T ss_pred             hcCCCCccEeEecccCCCCCC
Confidence            888753222233455555543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.43  E-value=2.9e-12  Score=119.70  Aligned_cols=199  Identities=9%  Similarity=0.105  Sum_probs=125.0

Q ss_pred             CCchHHHHHHHhCCCCCCCccc-ceeec-CCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHHhccC
Q 018455            7 PFRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD   84 (355)
Q Consensus         7 ~y~~~~~l~~elGl~~~~~~~~-~~~~~-~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   84 (355)
                      ....+.++++++|+.....+.. ...+. .+|+.+         .+|.  +....+.....++.++.++.+++..+.++.
T Consensus        85 ~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g~~~---------~~p~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  153 (433)
T 1d5t_A           85 ANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIY---------KVPS--TETEALASNLMGMFEKRRFRKFLVFVANFD  153 (433)
T ss_dssp             TTSHHHHHHHHHTGGGGCCEEECCEEEEEETTEEE---------ECCC--SHHHHHHCSSSCHHHHHHHHHHHHHHHHCC
T ss_pred             ccchHHHHHHHcCCccceEEEEeCceEEeeCCEEE---------ECCC--CHHHHhhCcccChhhHHHHHHHHHHHHhhc
Confidence            3457889999999985444432 12221 355421         1222  111122333455666666555544444332


Q ss_pred             CChhh---hhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHh--cCCCcceEEecCC
Q 018455           85 NTDVA---WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA--HQKNFDLVWCRGT  159 (355)
Q Consensus        85 ~~~~~---~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~--~~~~~~~~~~~gg  159 (355)
                      ...+.   ....+++|+.+|+++++.++.+++ ++...+....+.++.+.++...+..+..+...  ..+.....+++||
T Consensus       154 ~~~p~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~g~~~~~~p~gG  232 (433)
T 1d5t_A          154 ENDPKTFEGVDPQNTSMRDVYRKFDLGQDVID-FTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYG  232 (433)
T ss_dssp             TTCGGGGTTCCTTTSBHHHHHHHTTCCHHHHH-HHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSCCSSSCCSEEEETTC
T ss_pred             ccCchhccccccccCCHHHHHHHcCCCHHHHH-HHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCcC
Confidence            11111   113568999999999888888755 44333222233456666665444333333211  1122346789999


Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +++ ++++|++.+++.|++|+++++|++|..++  +++++|.++|++++||+||+|++++.
T Consensus       233 ~~~-l~~~l~~~~~~~G~~i~~~~~V~~I~~~~--~~v~~v~~~g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          233 LGE-LPQGFARLSAIYGGTYMLNKPVDDIIMEN--GKVVGVKSEGEVARCKQLICDPSYVP  290 (433)
T ss_dssp             TTH-HHHHHHHHHHHHTCCCBCSCCCCEEEEET--TEEEEEEETTEEEECSEEEECGGGCG
T ss_pred             HHH-HHHHHHHHHHHcCCEEECCCEEEEEEEeC--CEEEEEEECCeEEECCEEEECCCCCc
Confidence            998 88999999999999999999999999877  55777888999999999999999874

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.41  E-value=1.5e-12  Score=123.59  Aligned_cols=179  Identities=13%  Similarity=0.133  Sum_probs=117.4

Q ss_pred             ceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC---eEEecCEEEEccChhhHHHhhhc
Q 018455          152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGISTLQELIKN  227 (355)
Q Consensus       152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g---~~~~ad~VV~a~p~~~~~~l~~~  227 (355)
                      ...+++||+++ ++++|++.+.+  ++|++|++|++|..+++  ++. |++ +|   ++++||+||+|+|+..+.+|.+ 
T Consensus       230 ~~~~~~gG~~~-l~~~l~~~l~~--~~i~~~~~V~~i~~~~~--~v~-v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~~-  302 (489)
T 2jae_A          230 MMFTPVGGMDR-IYYAFQDRIGT--DNIVFGAEVTSMKNVSE--GVT-VEYTAGGSKKSITADYAICTIPPHLVGRLQN-  302 (489)
T ss_dssp             SEEEETTCTTH-HHHHHHHHHCG--GGEETTCEEEEEEEETT--EEE-EEEEETTEEEEEEESEEEECSCHHHHTTSEE-
T ss_pred             cEEeecCCHHH-HHHHHHHhcCC--CeEEECCEEEEEEEcCC--eEE-EEEecCCeEEEEECCEEEECCCHHHHHhCcc-
Confidence            45678999998 78888877632  78999999999999874  353 655 44   6899999999999999888765 


Q ss_pred             ccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcc---eeccCCCccceeeEcccccccccCCCceEEEEEee--C
Q 018455          228 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA---CSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--H  302 (355)
Q Consensus       228 ~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~  302 (355)
                       .++ ....+.+.++++.++.++++.|++++|.. ..+.   +...+.++..++++ +...+   .+.+.++.+...  .
T Consensus       303 -~l~-~~~~~~l~~~~~~~~~kv~l~~~~~~w~~-~~~~~g~~~~~~~~~~~~~~~-s~~~~---~~~~~l~~~~~~g~~  375 (489)
T 2jae_A          303 -NLP-GDVLTALKAAKPSSSGKLGIEYSRRWWET-EDRIYGGASNTDKDISQIMFP-YDHYN---SDRGVVVAYYSSGKR  375 (489)
T ss_dssp             -CCC-HHHHHHHHTEECCCEEEEEEEESSCHHHH-TTCCCSCEEEESSTTCEEECC-SSSTT---SSCEEEEEEEEETHH
T ss_pred             -CCC-HHHHHHHHhCCCccceEEEEEeCCCCccC-CCCcccccccCCCCceEEEeC-CCCCC---CCCCEEEEEeeCCch
Confidence             222 12233567788889999999999988731 1111   11122333332222 22111   134444432222  2


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhccc-CCCceeeeeeEEecCCC
Q 018455          303 ANELMPLKDDQVVAKAVSYLSKCIKD-FSTATVMDHKIRRFPKS  345 (355)
Q Consensus       303 ~~~~~~~~~ee~~~~~~~~l~~~~p~-~~~~~~~~~~v~~~~~a  345 (355)
                      +..|..++++++++.++++|++++|. +. .++....+.+|.+.
T Consensus       376 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~-~~~~~~~~~~W~~~  418 (489)
T 2jae_A          376 QEAFESLTHRQRLAKAIAEGSEIHGEKYT-RDISSSFSGSWRRT  418 (489)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHHHCGGGG-SSEEEEEEEEGGGS
T ss_pred             hhhhhcCCHHHHHHHHHHHHHHHcCcchh-hhccccEEEEcCCC
Confidence            23466789999999999999999986 43 23555555556543

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.38  E-value=2.8e-12  Score=125.96  Aligned_cols=171  Identities=16%  Similarity=0.185  Sum_probs=114.6

Q ss_pred             EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C------CeEEecCEEEEccChhhHHHh--
Q 018455          154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G------KETYSAGAVVLAVGISTLQEL--  224 (355)
Q Consensus       154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~------g~~~~ad~VV~a~p~~~~~~l--  224 (355)
                      ..++||+++ |+++|++     +.+|++|++|++|..++++  + .|++ +      +++++||+||+|+|+..++++  
T Consensus       394 ~~~~gG~~~-l~~~La~-----~l~I~l~~~V~~I~~~~~~--v-~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~  464 (662)
T 2z3y_A          394 LTVRNGYSC-VPVALAE-----GLDIKLNTAVRQVRYTASG--C-EVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPP  464 (662)
T ss_dssp             EEETTCTTH-HHHHHTT-----TCEEETTEEEEEEEEETTE--E-EEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSC
T ss_pred             eeecCcHHH-HHHHHHh-----cCceecCCeEEEEEECCCc--E-EEEEeecccCCCCeEEEeCEEEECCCHHHHhcccC
Confidence            457899998 6666653     5699999999999998753  5 4554 3      468999999999999999873  


Q ss_pred             --hhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccC-C---Ccc--ceeeEcccccccccCCCceEE
Q 018455          225 --IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG-D---SLA--WTFFDLNKIYDEHKDDSATVI  296 (355)
Q Consensus       225 --~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~-~---~~~--~~~~~~~~~~~~~~~~~g~~l  296 (355)
                        .+.|+++. ...+.++++++.++.++.+.|++++|.. ..+ .++.- .   ..+  +++++.+        ..+.++
T Consensus       465 ~i~f~P~LP~-~k~~Ai~~l~~g~~~KV~l~f~~~fW~~-~~~-~~G~l~~~~~~~~~~~~~~~~~--------~~~vL~  533 (662)
T 2z3y_A          465 AVQFVPPLPE-WKTSAVQRMGFGNLNKVVLCFDRVFWDP-SVN-LFGHVGSTTASRGELFLFWNLY--------KAPILL  533 (662)
T ss_dssp             SSEEESCCCH-HHHHHHHHSEECCCEEEEEECSSCCSCT-TCS-EEEECCSSSTTTTEEEEEECCS--------SSSEEE
T ss_pred             ceEEcCCCCH-HHHHHHHhCCccceeEEEEEcCcccccC-CCC-ceeeecCCCCCCCceeEEEeCC--------CCCEEE
Confidence              35565542 1223567888889999999999999942 222 33311 1   111  1223211        123343


Q ss_pred             EEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCC
Q 018455          297 QADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS  345 (355)
Q Consensus       297 ~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a  345 (355)
                       ..+.  .+..+..++++++++.++++|+++|+.....++..+.+++|...
T Consensus       534 -~~~~G~~a~~~~~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~d  583 (662)
T 2z3y_A          534 -ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRAD  583 (662)
T ss_dssp             -EEECTHHHHHHTTSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTC
T ss_pred             -EEeccHhHHHHHhCCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCC
Confidence             2222  23346678999999999999999997643345666777777663

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.36  E-value=4.8e-12  Score=126.35  Aligned_cols=170  Identities=16%  Similarity=0.181  Sum_probs=114.8

Q ss_pred             EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C------CeEEecCEEEEccChhhHHHh--
Q 018455          154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G------KETYSAGAVVLAVGISTLQEL--  224 (355)
Q Consensus       154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~------g~~~~ad~VV~a~p~~~~~~l--  224 (355)
                      ..++||+++ |+++|++     +.+|++|++|++|..++++  | .|++ +      |++++||+||+|+|+..++++  
T Consensus       565 ~~~~gG~~~-L~~aLa~-----~l~I~Lnt~V~~I~~~~~g--V-~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~  635 (852)
T 2xag_A          565 LTVRNGYSC-VPVALAE-----GLDIKLNTAVRQVRYTASG--C-EVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPP  635 (852)
T ss_dssp             EEETTCTTH-HHHHHTT-----TCCEECSEEEEEEEEETTE--E-EEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSC
T ss_pred             EEecCcHHH-HHHHHHh-----CCCEEeCCeEEEEEEcCCc--E-EEEEeecccCCCCeEEECCEEEECCCHHHHHhhhc
Confidence            457899998 6666653     4589999999999998753  5 4654 3      468999999999999999874  


Q ss_pred             --hhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccC------CCccceeeEcccccccccCCCceEE
Q 018455          225 --IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKDDSATVI  296 (355)
Q Consensus       225 --~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~l  296 (355)
                        .+.|+|+. ...+.++++++.++.++++.|++++|.. ..+ .++..      ....+++++..      .  ...++
T Consensus       636 ~I~F~P~LP~-~k~~AI~~l~~g~v~KV~L~F~~~fW~~-~~~-~fG~l~~~~~~~~~l~~~~~~~------~--~pvLl  704 (852)
T 2xag_A          636 AVQFVPPLPE-WKTSAVQRMGFGNLNKVVLCFDRVFWDP-SVN-LFGHVGSTTASRGELFLFWNLY------K--APILL  704 (852)
T ss_dssp             SSEEESCCCH-HHHHHHHHSEECCCEEEEEECSSCCSCT-TCC-EEEECCSSSTTTTTTCEEEECS------S--SSEEE
T ss_pred             ccccCCCCCH-HHHHHHHcCCccceEEEEEEcCCcccCC-CCC-eeeeeccccCCCCceEEEecCC------C--CCEEE
Confidence              34555542 1123567888889999999999999942 122 33311      01112344421      1  23343


Q ss_pred             EEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCC
Q 018455          297 QADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK  344 (355)
Q Consensus       297 ~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~  344 (355)
                       +.+.  .+..+..++++++++.++++|+++|+.....++..+.+++|..
T Consensus       705 -~~v~G~~a~~l~~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~  753 (852)
T 2xag_A          705 -ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRA  753 (852)
T ss_dssp             -EEECHHHHHHGGGSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTT
T ss_pred             -EEecCcCHHHHhcCCHHHHHHHHHHHHHHHhCccccCCceEEEEEecCC
Confidence             2222  2345667899999999999999999764334566777777766

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.36  E-value=1.4e-11  Score=115.70  Aligned_cols=196  Identities=12%  Similarity=0.167  Sum_probs=120.3

Q ss_pred             CCchHHHHHHHhCCCCCCCccc-ceeec-CCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHHhccC
Q 018455            7 PFRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD   84 (355)
Q Consensus         7 ~y~~~~~l~~elGl~~~~~~~~-~~~~~-~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   84 (355)
                      .+..+.++++++|+.....+.. ...|. .+|+.+         .+|.  +....+....+++.++.++.+++..+....
T Consensus        93 ~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~~g~~~---------~~p~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  161 (453)
T 2bcg_G           93 ANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY---------KVPA--NEIEAISSPLMGIFEKRRMKKFLEWISSYK  161 (453)
T ss_dssp             TTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEE---------ECCS--SHHHHHHCTTSCHHHHHHHHHHHHHHHHCB
T ss_pred             cCcHHHHHHHhcCCccceEEEEccceeEEeCCeEE---------ECCC--ChHHHHhhhccchhhHHHHHHHHHHHHHhc
Confidence            5678999999999975544432 12221 355422         1222  211223344566667766555555444332


Q ss_pred             CChh-hhh--hcccccHHHHHHHhCCCHHHHHHHHHHHHHh----hhCCChhhccHHHHHHHHHHHHHhcCCCcceEEec
Q 018455           85 NTDV-AWR--KYDSITARELFKQFGCSERLYRNVIGPLVQV----GLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCR  157 (355)
Q Consensus        85 ~~~~-~~~--~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
                      ...+ .+.  ..+..|+.+|+++++.++.+++ ++...+..    .+...|...++..+..++...  .........+++
T Consensus       162 ~~~p~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~--~~~~~~~~~~p~  238 (453)
T 2bcg_G          162 EDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKE-FIGHAMALWTNDDYLQQPARPSFERILLYCQSV--ARYGKSPYLYPM  238 (453)
T ss_dssp             TTBGGGSTTCCTTTSBHHHHHHHTTCCHHHHH-HHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHH--HHHSSCSEEEET
T ss_pred             cCCchhhhccccccCCHHHHHHHhCCCHHHHH-HHHHHHHhccCccccCCchHHHHHHHHHHHHHH--HhhcCCceEeeC
Confidence            1111 111  2468899999999888888765 44322211    012223333332222222211  111122345899


Q ss_pred             CCcchHHHHHHHHHHHHcCcEEEcCceeeEEEec--CCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       158 gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~--~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      ||+++ ++++|++.+++.|++|+++++|++|..+  +  +++++|.++|+++.||.||+|++++
T Consensus       239 gG~~~-l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~--~~~~~V~~~g~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          239 YGLGE-LPQGFARLSAIYGGTYMLDTPIDEVLYKKDT--GKFEGVKTKLGTFKAPLVIADPTYF  299 (453)
T ss_dssp             TCTTH-HHHHHHHHHHHTTCEEECSCCCCEEEEETTT--TEEEEEEETTEEEECSCEEECGGGC
T ss_pred             CCHHH-HHHHHHHHHHHcCCEEECCCEEEEEEEECCC--CeEEEEEECCeEEECCEEEECCCcc
Confidence            99998 8899999999999999999999999987  5  5677888899999999999999987

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.21  E-value=1.6e-10  Score=110.47  Aligned_cols=151  Identities=13%  Similarity=0.007  Sum_probs=99.1

Q ss_pred             cccccHHHHHHHh------CCCHHHHHHHHHHHHH---hhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchH
Q 018455           93 YDSITARELFKQF------GCSERLYRNVIGPLVQ---VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK  163 (355)
Q Consensus        93 ~d~~s~~~~l~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~  163 (355)
                      .+++|+.+|+.+.      ..++.. ..++.+++.   ..++.+++++|+.+++.       .. .+ ...+++| +++ 
T Consensus       136 ~~d~s~~~~l~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~g~~~~~~s~~~~~~-------~~-~~-~~~~~~g-~~~-  203 (516)
T 1rsg_A          136 VSDCSFFQLVMKYLLQRRQFLTNDQ-IRYLPQLCRYLELWHGLDWKLLSAKDTYF-------GH-QG-RNAFALN-YDS-  203 (516)
T ss_dssp             --CCBHHHHHHHHHHHHGGGSCHHH-HHHHHHHHGGGHHHHTBCTTTSBHHHHCC-------CC-SS-CCEEESC-HHH-
T ss_pred             CCCCCHHHHHHHHHHHhhcccCHHH-HHHHHHHHHHHHHHhCCChHHCChHHHHh-------hc-cC-cchhhhC-HHH-
Confidence            5678999988753      122221 123333332   33567788888775421       11 11 2245667 776 


Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH-----------hhhccccc
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE-----------LIKNSILC  231 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~-----------l~~~~~l~  231 (355)
                      +++.|++.+.  +++|++|++|++|..+++ +.+ .|++ +|++++||+||+|+|+..++.           +...|+++
T Consensus       204 l~~~l~~~l~--~~~i~~~~~V~~I~~~~~-~~v-~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp  279 (516)
T 1rsg_A          204 VVQRIAQSFP--QNWLKLSCEVKSITREPS-KNV-TVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLK  279 (516)
T ss_dssp             HHHHHHTTSC--GGGEETTCCEEEEEECTT-SCE-EEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCC
T ss_pred             HHHHHHHhCC--CCEEEECCEEEEEEEcCC-CeE-EEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCCC
Confidence            6677765553  368999999999998633 225 5776 677899999999999999874           33444443


Q ss_pred             CcHHHHhhccCCcccEEEEEEEEccCCCC
Q 018455          232 NREEFLKVLNLASIDVVSVKLWFDKKVTV  260 (355)
Q Consensus       232 ~~~~~~~~~~l~~~~~~~v~l~~~~~~~~  260 (355)
                       ....+.++++.+.++.++++.|++++|.
T Consensus       280 -~~~~~ai~~~~~~~~~Kv~l~f~~~fW~  307 (516)
T 1rsg_A          280 -PVIQDAFDKIHFGALGKVIFEFEECCWS  307 (516)
T ss_dssp             -HHHHHHTTSSCCCCCEEEEEEESSCCSC
T ss_pred             -HHHHHHHHhCCCCcceEEEEEeCCCCCC
Confidence             2223457888899999999999999994

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.21  E-value=4.7e-11  Score=118.41  Aligned_cols=176  Identities=18%  Similarity=0.215  Sum_probs=112.5

Q ss_pred             eEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH--hhhccc
Q 018455          153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSI  229 (355)
Q Consensus       153 ~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~--l~~~~~  229 (355)
                      ....++|++. +.+.++     .|++|++|++|++|..++++  + .|++ +|++++||+||+|+|+..+++  +...++
T Consensus       526 ~~~~~~G~~~-l~~aLa-----~gl~I~l~t~V~~I~~~~~~--v-~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~  596 (776)
T 4gut_A          526 HTLLTPGYSV-IIEKLA-----EGLDIQLKSPVQCIDYSGDE--V-QVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPP  596 (776)
T ss_dssp             EEECTTCTHH-HHHHHH-----TTSCEESSCCEEEEECSSSS--E-EEEETTCCEEEESEEEECCCHHHHHTTCSEEESC
T ss_pred             eEEECChHHH-HHHHHH-----hCCcEEcCCeeEEEEEcCCE--E-EEEECCCcEEEcCEEEECCCHHHHhhcccccCCC
Confidence            4556788877 444443     37799999999999988753  5 4666 677899999999999999875  334555


Q ss_pred             ccCcHHHHhhccCCcccEEEEEEEEccCCCCCCC-CcceeccCC------CccceeeEcccccccccCCCceEEEEEee-
Q 018455          230 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGD------SLAWTFFDLNKIYDEHKDDSATVIQADFY-  301 (355)
Q Consensus       230 l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-  301 (355)
                      ++. ...+.+..+++.++.++.+.|++++|.... ....++.-.      ....++++.+   +.   +.+.++...+. 
T Consensus       597 Lp~-~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~---p~---g~~~vL~~~i~G  669 (776)
T 4gut_A          597 LSE-KKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMD---PQ---KKHSVLMSVIAG  669 (776)
T ss_dssp             CCH-HHHHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESC---TT---SCSCEEEEEECT
T ss_pred             CCH-HHHHHHHhCCCeeEEEEEEecCcccccccCCCCceEEeecCCcCCCceEEEEecCC---CC---CCceEEEEEecc
Confidence            532 223356777888899999999999984110 011222111      1111233321   11   12234433222 


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCC
Q 018455          302 -HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK  344 (355)
Q Consensus       302 -~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~  344 (355)
                       .+..+..++++|+++.++++|+++|+......++.+.+++|..
T Consensus       670 ~~a~~l~~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~  713 (776)
T 4gut_A          670 EAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWST  713 (776)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGG
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHhCcccccCcceEEEecCCC
Confidence             1234567899999999999999999863334555666666654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.17  E-value=3.5e-12  Score=116.47  Aligned_cols=202  Identities=12%  Similarity=0.019  Sum_probs=124.9

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcccceeecCCCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchhhHHHHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLMAAV   80 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~~~~~~~   80 (355)
                      |+|...+++++++++++|...  .+.+......+|+.+         ++|.....+. ++..  .++.+..   +++...
T Consensus        56 ~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~g~~~---------~~p~~~~~~~~l~~~--~~~~~~~---~~l~~~  119 (367)
T 1i8t_A           56 HIFHTNDKYIWDYVNDLVEFN--RFTNSPLAIYKDKLF---------NLPFNMNTFHQMWGV--KDPQEAQ---NIINAQ  119 (367)
T ss_dssp             CCEEESCHHHHHHHHTTSCBC--CCCCCCEEEETTEEE---------ESSBSHHHHHHHHCC--CCHHHHH---HHHHHH
T ss_pred             ceecCCCHHHHHHHHHhhhhh--hccccceEEECCeEE---------EcCCCHHHHHHHhcc--CCHHHHH---HHHHHH
Confidence            777888999999999998632  222212222455421         1222222222 2211  1222221   111222


Q ss_pred             hccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCc-ce-EEecC
Q 018455           81 IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF-DL-VWCRG  158 (355)
Q Consensus        81 ~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~-~~-~~~~g  158 (355)
                      ..      .....++.|+.+|+.++ +++++.+.++.|++.++|+.+|+++|+.++..+.......+.... .. ++++|
T Consensus       120 ~~------~~~~~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~g  192 (367)
T 1i8t_A          120 KK------KYGDKVPENLEEQAISL-VGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVG  192 (367)
T ss_dssp             TT------TTCCCCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTT
T ss_pred             hh------ccCCCCCccHHHHHHHH-HhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCC
Confidence            11      11124678999999998 899999999999999999999999998755211000000111111 22 38899


Q ss_pred             CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhcccccCcHHHHh
Q 018455          159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLK  238 (355)
Q Consensus       159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~  238 (355)
                      |+++ ++++|++     |++|++|++|++|..    . +        .+.||+||+|+|++.+.++             .
T Consensus       193 G~~~-l~~~l~~-----g~~i~l~~~V~~i~~----~-v--------~~~~D~VV~a~p~~~~~~~-------------~  240 (367)
T 1i8t_A          193 GYTK-LIEKMLE-----GVDVKLGIDFLKDKD----S-L--------ASKAHRIIYTGPIDQYFDY-------------R  240 (367)
T ss_dssp             CHHH-HHHHHHT-----TSEEECSCCGGGSHH----H-H--------HTTEEEEEECSCHHHHTTT-------------T
T ss_pred             CHHH-HHHHHhc-----CCEEEeCCceeeech----h-h--------hccCCEEEEeccHHHHHHH-------------h
Confidence            9988 6666654     689999999998851    1 2        2468999999999876432             2


Q ss_pred             hccCCcccEEEEEEEEccCC
Q 018455          239 VLNLASIDVVSVKLWFDKKV  258 (355)
Q Consensus       239 ~~~l~~~~~~~v~l~~~~~~  258 (355)
                      +.+++|.++..+.+.++++.
T Consensus       241 l~~l~y~s~~~v~~~~d~~~  260 (367)
T 1i8t_A          241 FGALEYRSLKFETERHEFPN  260 (367)
T ss_dssp             TCCCCEEEEEEEEEEESSSC
T ss_pred             hCCCCCceEEEEEEEecccc
Confidence            34567778888888888764

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.16  E-value=2e-11  Score=118.85  Aligned_cols=160  Identities=10%  Similarity=-0.091  Sum_probs=103.2

Q ss_pred             hhcccccH---HHHHHH-hCCCHHHHHHHHHHHHHhhhC-CChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHH
Q 018455           91 RKYDSITA---RELFKQ-FGCSERLYRNVIGPLVQVGLF-APAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF  165 (355)
Q Consensus        91 ~~~d~~s~---~~~l~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~  165 (355)
                      .++|+.|+   .+|+++ ..++ ..++ ++.-+..+..+ .+....|+..++....    .. .+.....+.||+++ |+
T Consensus       279 ~~~d~~S~~~~~~~L~~~~~~s-~~~~-~~~~~~~~~gg~~~~~~~S~le~L~~~~----~~-~~~~~~~i~GG~~~-L~  350 (721)
T 3ayj_A          279 VAFEKGTLPPVDGVLDVDESIS-YYVE-LFGRFGFGTGGFKPLYNISLVEMMRLIL----WD-YSNEYTLPVTENVE-FI  350 (721)
T ss_dssp             HHHHHTSSCCGGGTSCHHHHHH-HHHH-HHHHHCSSSSCCGGGTTBBHHHHHHHHH----TT-TTCEECCSSSSTHH-HH
T ss_pred             HhhcccchhHHHHHHHhccccH-HHHH-HHHHHhhccCCCCCccchhHHHHHHHHh----cC-CccceeEECCcHHH-HH
Confidence            46788888   888854 1122 2222 23322222222 3445788877665441    21 22345568899998 88


Q ss_pred             HHHHHHHHHcCcEEEcCceee--EEEecCCCC-----eEEEE-Ee-CCe--EEecCEEEEccChhhHHH------hh---
Q 018455          166 EPWMDSMRTRGCEFLDGRRVT--DFIYDEERC-----CISDV-VC-GKE--TYSAGAVVLAVGISTLQE------LI---  225 (355)
Q Consensus       166 ~~l~~~l~~~G~~i~l~~~V~--~I~~~~~~~-----~v~~v-~~-~g~--~~~ad~VV~a~p~~~~~~------l~---  225 (355)
                      ++|++.+.. |+.|+++++|+  +|.++++++     .| .| .. +|+  +++||+||+|+|+..+..      |-   
T Consensus       351 ~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~g~~~~~~~V-~V~~~~~G~~~~~~aD~VIvTvP~~~L~~~~~r~~i~~~~  428 (721)
T 3ayj_A          351 RNLFLKAQN-VGAGKLVVQVRQERVANACHSGTASARAQ-LLSYDSHNAVHSEAYDFVILAVPHDQLTPIVSRSGFEHAA  428 (721)
T ss_dssp             HHHHHHHHH-HTTTSEEEEEECEEEEEEEECSSSSCCEE-EEEEETTCCEEEEEESEEEECSCHHHHHHHHSSSCSSCEE
T ss_pred             HHHHHhccc-CCceEeCCEEEeeeEEECCCCCccccceE-EEEEecCCceEEEEcCEEEECCCHHHHhhccccccccccc
Confidence            899887643 67899999999  999976421     25 45 33 465  789999999999998865      22   


Q ss_pred             ----h--------------ccc-c-c----C--cHHHHhhccCCcccEEEEEEEE-----ccCCCC
Q 018455          226 ----K--------------NSI-L-C----N--REEFLKVLNLASIDVVSVKLWF-----DKKVTV  260 (355)
Q Consensus       226 ----~--------------~~~-l-~----~--~~~~~~~~~l~~~~~~~v~l~~-----~~~~~~  260 (355)
                          .              .++ + +    .  ......++++.+.+..|+.+.|     ++++|.
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~  494 (721)
T 3ayj_A          429 SQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVP  494 (721)
T ss_dssp             EEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSC
T ss_pred             cccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCccc
Confidence                1              122 2 2    0  1222356888999999999999     899984

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.13  E-value=7.6e-12  Score=115.56  Aligned_cols=206  Identities=10%  Similarity=-0.006  Sum_probs=123.1

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcccceeecCCCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchhhHHHHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLMAAV   80 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~~~~~~~   80 (355)
                      |.|...+++++++++++|+-.  .+.....+..+|+.+         ++|.....+. ++... +++ ++++.  .+...
T Consensus        65 ~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~G~~~---------~~p~~~~~~~~l~~~~-~~~-~~~~~--~l~~~  129 (399)
T 1v0j_A           65 HLFHTSNKRVWDYVRQFTDFT--DYRHRVFAMHNGQAY---------QFPMGLGLVSQFFGKY-FTP-EQARQ--LIAEQ  129 (399)
T ss_dssp             CCEEESCHHHHHHHTTTCCBC--CCCCCEEEEETTEEE---------EESSSHHHHHHHHTSC-CCH-HHHHH--HHHHH
T ss_pred             cEEcCCcHHHHHHHHHhhhhh--ccccceEEEECCEEE---------eCCCCHHHHHHHhccc-CCH-HHHHH--HHHHH
Confidence            677788999999999999832  222222222456432         1222211111 22221 122 22220  11121


Q ss_pred             hccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCc-ce-EEecC
Q 018455           81 IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF-DL-VWCRG  158 (355)
Q Consensus        81 ~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~-~~-~~~~g  158 (355)
                      ..      .....++.|+.+|+.+. +++++++.++.|++.++++.+++++|+.++..+...+...+.... .. .+++|
T Consensus       130 ~~------~~~~~~~~s~~e~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~g  202 (399)
T 1v0j_A          130 AA------EIDTADAQNLEEKAISL-IGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTD  202 (399)
T ss_dssp             GG------GSCTTC----CCHHHHH-HCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTT
T ss_pred             hh------ccCCCCcccHHHHHHHH-HhHHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccc
Confidence            11      00124678999999986 899999999999999999999999998765211000000111111 23 37899


Q ss_pred             CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEE-ecCEEEEccChhhHHHhhhcccccCcHHHH
Q 018455          159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETY-SAGAVVLAVGISTLQELIKNSILCNREEFL  237 (355)
Q Consensus       159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~-~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~  237 (355)
                      |+++ ++++|++   +.|++|++|++|++|..+     |     +  ++ +||+||+|+|++.+.++.            
T Consensus       203 G~~~-l~~~l~~---~~g~~I~l~~~V~~I~~~-----v-----~--~~~~aD~VI~t~p~~~l~~~~------------  254 (399)
T 1v0j_A          203 GYTA-WLQNMAA---DHRIEVRLNTDWFDVRGQ-----L-----R--PGSPAAPVVYTGPLDRYFDYA------------  254 (399)
T ss_dssp             HHHH-HHHHHTC---STTEEEECSCCHHHHHHH-----H-----T--TTSTTCCEEECSCHHHHTTTT------------
T ss_pred             cHHH-HHHHHHh---cCCeEEEECCchhhhhhh-----h-----h--hcccCCEEEECCcHHHHHhhh------------
Confidence            9988 6666654   468899999999998631     2     1  45 699999999999876551            


Q ss_pred             hhccCCcccEEEEEEEEccCC
Q 018455          238 KVLNLASIDVVSVKLWFDKKV  258 (355)
Q Consensus       238 ~~~~l~~~~~~~v~l~~~~~~  258 (355)
                       +.+++|.++..+.+.++.+.
T Consensus       255 -l~~l~y~s~~~~~~~~~~~~  274 (399)
T 1v0j_A          255 -EGRLGWRTLDFEVEVLPIGD  274 (399)
T ss_dssp             -TCCCCEEEEEEEEEEESSSC
T ss_pred             -hCCCCcceEEEEEEEEcccc
Confidence             23566777777888887754

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.09  E-value=2.7e-11  Score=111.24  Aligned_cols=198  Identities=11%  Similarity=0.036  Sum_probs=122.3

Q ss_pred             CcccccCCchHHHHHHHhCCCCCCCcccceeecCCCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchhhHHHH
Q 018455            1 MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLMAA   79 (355)
Q Consensus         1 ~H~~~~~y~~~~~l~~elGl~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~~~~~~   79 (355)
                      .|+|...|++++++++++|.-.  .+........+|+.+         ++|.....+. ++... +++.+..+   .+..
T Consensus        59 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~g~~~---------~~P~~~~~~~~l~~~~-~~~~~~~~---~l~~  123 (384)
T 2bi7_A           59 PHIFHTDNETVWNYVNKHAEMM--PYVNRVKATVNGQVF---------SLPINLHTINQFFSKT-CSPDEARA---LIAE  123 (384)
T ss_dssp             CCCEEESCHHHHHHHHTTSCEE--ECCCCEEEEETTEEE---------EESCCHHHHHHHTTCC-CCHHHHHH---HHHH
T ss_pred             ceEECCCCHHHHHHHHHHhhhc--ccccceEEEECCEEE---------ECCCChhHHHHHhccc-CCHHHHHH---HHHH
Confidence            3778889999999999999621  112111222455421         1222222222 22221 23322211   1112


Q ss_pred             HhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCC-Ccce-EEec
Q 018455           80 VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-NFDL-VWCR  157 (355)
Q Consensus        80 ~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~-~~~~-~~~~  157 (355)
                      ...    . .  ..++.|+.+|+.++ +++++++.++.|++.++|+.+|+++|+.++..+...+...+.. .... .+++
T Consensus       124 ~~~----~-~--~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~  195 (384)
T 2bi7_A          124 KGD----S-T--IADPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPK  195 (384)
T ss_dssp             HSC----C-S--CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEET
T ss_pred             hhh----c-c--CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEEC
Confidence            111    1 0  24678999999998 8999999999999999999999999987642110000001111 1122 3899


Q ss_pred             CCcchHHHHHHHHHHHHcCcEEEcCceee-EEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhcccccCcHHH
Q 018455          158 GTLREKIFEPWMDSMRTRGCEFLDGRRVT-DFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEF  236 (355)
Q Consensus       158 gg~~~~l~~~l~~~l~~~G~~i~l~~~V~-~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~  236 (355)
                      ||+++ ++++|++   +.|++|++|++|+ +|..                 +||+||+|+|++.+.++.           
T Consensus       196 gG~~~-l~~~l~~---~~g~~I~l~~~V~~~i~~-----------------~~d~VI~a~p~~~~~~~~-----------  243 (384)
T 2bi7_A          196 CGYTQ-MIKSILN---HENIKVDLQREFIVEERT-----------------HYDHVFYSGPLDAFYGYQ-----------  243 (384)
T ss_dssp             THHHH-HHHHHHC---STTEEEEESCCCCGGGGG-----------------GSSEEEECSCHHHHTTTT-----------
T ss_pred             cCHHH-HHHHHHh---cCCCEEEECCeeehhhhc-----------------cCCEEEEcCCHHHHHHhh-----------
Confidence            99988 6666654   4688999999999 7741                 289999999999877652           


Q ss_pred             HhhccCCcccEEEEEEEEc
Q 018455          237 LKVLNLASIDVVSVKLWFD  255 (355)
Q Consensus       237 ~~~~~l~~~~~~~v~l~~~  255 (355)
                        +..++|.+...+.+.+|
T Consensus       244 --lg~l~y~s~~~v~~~~d  260 (384)
T 2bi7_A          244 --YGRLGYRTLDFKKFTYQ  260 (384)
T ss_dssp             --TCCCCEEEEEEEEEEEE
T ss_pred             --cCCCCcceEEEEEEEeC
Confidence              22456667777777777

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.08  E-value=2.1e-11  Score=111.65  Aligned_cols=200  Identities=9%  Similarity=0.032  Sum_probs=125.6

Q ss_pred             cccccCCchHHHHHHHhCCCCCCCcccceeecCCCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchhhHHHHH
Q 018455            2 QGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLMAAV   80 (355)
Q Consensus         2 H~~~~~y~~~~~l~~elGl~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~~~~~~~   80 (355)
                      |.|...++.++++++++|...  .+.+......+|+.+         ++|..++.+. ++.. .+++.....++.   . 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~---------~lP~~~~~~~~l~~~-~~~~~~~~~~l~---~-  148 (397)
T 3hdq_A           85 HIFHTNSKDVFEYLSRFTEWR--PYQHRVLASVDGQLL---------PIPINLDTVNRLYGL-NLTSFQVEEFFA---S-  148 (397)
T ss_dssp             CCCEESCHHHHHHHHTSCCEE--ECCCBEEEEETTEEE---------EESCCHHHHHHHHTC-CCCHHHHHHHHH---H-
T ss_pred             cccCCChHHHHHHHHHhhhcc--cccccceEEECCEEE---------EcCCChHHHHHhhcc-CCCHHHHHHHHh---h-
Confidence            778889999999999999532  111211222456532         2333332222 2221 233333222211   1 


Q ss_pred             hccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH-hcCC-Ccce-EEec
Q 018455           81 IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL-AHQK-NFDL-VWCR  157 (355)
Q Consensus        81 ~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~-~~~~-~~~~-~~~~  157 (355)
                      .       .+...+++|+.+|+.++ +++++++.|+.|++.++|+.+++++|+.++.. +..... .... ...+ ++|+
T Consensus       149 ~-------~~~~~~~~s~~e~~~~~-~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~R-vp~~~~~d~~yf~~~~qg~P~  219 (397)
T 3hdq_A          149 V-------AEKVEQVRTSEDVVVSK-VGRDLYNKFFRGYTRKQWGLDPSELDASVTAR-VPTRTNRDNRYFADTYQAMPL  219 (397)
T ss_dssp             H-------CCCCSSCCBHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCGGGSBTTTGGG-SCCCSSCCCBSCCCSEEEEET
T ss_pred             c-------ccCCCCCcCHHHHHHHh-cCHHHHHHHHHHHhCchhCCCHHHHHHHHHHh-cCcccccCccchhhhheeccC
Confidence            0       11236789999999987 89999999999999999999999999875532 211000 0000 1122 4799


Q ss_pred             CCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhcccccCcHHHH
Q 018455          158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFL  237 (355)
Q Consensus       158 gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~  237 (355)
                      ||.++ +.+.|+   ++.|++|++|++|+++               +.++.+|+||+|+|.+.+...             
T Consensus       220 gGy~~-l~e~l~---~~~g~~V~l~~~v~~~---------------~~~~~~d~vI~T~P~d~~~~~-------------  267 (397)
T 3hdq_A          220 HGYTR-MFQNML---SSPNIKVMLNTDYREI---------------ADFIPFQHMIYTGPVDAFFDF-------------  267 (397)
T ss_dssp             TCHHH-HHHHHT---CSTTEEEEESCCGGGT---------------TTTSCEEEEEECSCHHHHTTT-------------
T ss_pred             CCHHH-HHHHHH---hccCCEEEECCeEEec---------------cccccCCEEEEcCCHHHHHHH-------------
Confidence            99887 555553   4569999999999843               123458999999998766211             


Q ss_pred             hhccCCcccEEEEEEEEccCC
Q 018455          238 KVLNLASIDVVSVKLWFDKKV  258 (355)
Q Consensus       238 ~~~~l~~~~~~~v~l~~~~~~  258 (355)
                      .+.++++.++..+.+.++.+.
T Consensus       268 ~~g~L~yrsl~~~~~~~~~~~  288 (397)
T 3hdq_A          268 CYGKLPYRSLEFRHETHDTEQ  288 (397)
T ss_dssp             TTCCCCEEEEEEEEEEESSSC
T ss_pred             hcCCCCCceEEEEEEEecccc
Confidence            234677778888888898653

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.75  E-value=0.00011  Score=66.64  Aligned_cols=114  Identities=11%  Similarity=0.052  Sum_probs=67.8

Q ss_pred             hhhcccccHHHHHH-HhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHH
Q 018455           90 WRKYDSITARELFK-QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPW  168 (355)
Q Consensus        90 ~~~~d~~s~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l  168 (355)
                      .+++|++|+.+||+ +.++++.+++.+ ..++  -+. ...+.|+..++....    ....+....-+.||+++ |+++|
T Consensus       256 ~~~lD~~S~~~~L~~~~g~s~~~~~~~-~~~~--~~~-~~~~~s~l~~l~~~~----~~~~~~~~~~i~GG~~~-l~~~l  326 (376)
T 2e1m_A          256 VRDFDGYSMGRFLREYAEFSDEAVEAI-GTIE--NMT-SRLHLAFFHSFLGRS----DIDPRATYWEIEGGSRM-LPETL  326 (376)
T ss_dssp             HHHHTTCBHHHHHHHTSCCCHHHHHHH-HHHT--TCT-TTTTSBHHHHHHHCS----CSCTTCCEEEETTCTTH-HHHHH
T ss_pred             HHHHhCCCHHHHHhhccCCCHHHHHHH-Hhhc--Ccc-ccchhhHHHHHHHhh----hhccCCceEEECCcHHH-HHHHH
Confidence            34679999999999 788999887644 3332  122 223667665543210    11122334557899998 88888


Q ss_pred             HHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccC
Q 018455          169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVG  217 (355)
Q Consensus       169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p  217 (355)
                      ++.+   +.+|++|++|++|...++|  +..+..+......-+|.++|-
T Consensus       327 ~~~l---~~~i~l~~~V~~I~~~~~g--v~v~~~~~~~~~g~~~~~~~~  370 (376)
T 2e1m_A          327 AKDL---RDQIVMGQRMVRLEYYDPG--RDGHHGELTGPGGPAVAIQTV  370 (376)
T ss_dssp             HHHG---GGTEECSEEEEEEEECCCC---------------CCEEEEEE
T ss_pred             HHhc---CCcEEecCeEEEEEECCCc--eEEEeCCCcCCCCCeeEEEec
Confidence            8766   5689999999999998764  432222222334556766553

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.73  E-value=2.4e-05  Score=59.14  Aligned_cols=107  Identities=10%  Similarity=0.011  Sum_probs=53.3

Q ss_pred             eEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccc
Q 018455          205 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKI  284 (355)
Q Consensus       205 ~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
                      ++++||+||||+|+.+++.+.+.|+|+. ...+.+++++++...|+.+.|++++|..  .+ ..          ++.+. 
T Consensus         4 ~~~~Ad~VIvTvP~~vL~~I~F~P~LP~-~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~--~~-~~----------gd~s~-   68 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLRFVKVTPPFSY-KKRRAVIETHYDQATKVLLEFSRRWWEF--TE-AD----------WKREL-   68 (130)
T ss_dssp             EEEEESEEEECSCHHHHTTSEEESCCCH-HHHHHHHHCCEECEEEEEEEESSCGGGC--CH-HH----------HHHHH-
T ss_pred             eEEEcCEEEEcCCHHHHhcCcCCCCCCH-HHHHHHHhCCCcceeEEEEEECCCCCCC--CC-cc----------ccccC-
Confidence            5789999999999999999888877752 2223567888999999999999999941  11 10          11111 


Q ss_pred             cccccCCCceEEEEE-ee-CCCCCCCCCHHHHHHHHHHHHhhhcccCC
Q 018455          285 YDEHKDDSATVIQAD-FY-HANELMPLKDDQVVAKAVSYLSKCIKDFS  330 (355)
Q Consensus       285 ~~~~~~~~g~~l~~~-~~-~~~~~~~~~~ee~~~~~~~~l~~~~p~~~  330 (355)
                      .+.   ..+.++.++ +. .+.+|..++. |..+.++..|.+++|+.+
T Consensus        69 ~~~---~pg~l~~f~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~p~~~  112 (130)
T 2e1m_B           69 DAI---APGLYDYYQQWGEDDAEAALALP-QSVRNLPTGLLGAHPSVD  112 (130)
T ss_dssp             HHH---STTHHHHHHHHCCCSCCCC-----------------------
T ss_pred             CCC---CCeEEEEecccCHHHHHHhcCCH-HHHHHHHHHHHHhCCCCc
Confidence            011   123222111 12 2346777766 456778889999999754

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=97.57  E-value=0.0015  Score=58.69  Aligned_cols=55  Identities=13%  Similarity=0.131  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|+.+++ + ++.|.+ +|  .+++||.||+|+.++.
T Consensus       152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~-~-~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          152 LMLAYQGDAESDGAQLVFHTPLIAGRVRPE-G-GFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECTT-S-SEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEcCC-c-eEEEEECCCceeEEEeCEEEECCCcch
Confidence            678888889999999999999999999865 2 235766 45  4899999999999984

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=97.40  E-value=0.0053  Score=55.48  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|..+++  ++ +|.+++++++||.||+|+.++.
T Consensus       166 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~--~~-~v~~~~g~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          166 VCKAYVKAAKMLGAEIFEHTPVLHVERDGE--AL-FIKTPSGDVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECSSS--SE-EEEETTEEEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHCCCEEEcCCcEEEEEEECC--EE-EEEcCCceEEcCEEEECCChhH
Confidence            667888888889999999999999998764  35 6777656899999999999874

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=97.30  E-value=0.00062  Score=63.06  Aligned_cols=56  Identities=20%  Similarity=0.326  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCc---eeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGR---RVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~---~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~  221 (355)
                      +.+.|.+.+++.|++|++++   +|++|..++  +++.+|++ +|++++||.||+|+.++..
T Consensus       163 ~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~--~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          163 ALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN--NDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             HHHHHHHHHHHTTCEEEESTTTTCEEEEEEET--TEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             HHHHHHHHHHhcCCEEEeCCcCceEEEEEecC--CeEEEEEECCCCEEECCEEEECCCCChh
Confidence            66788888989999999999   999999876  45777888 5679999999999999853

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.30  E-value=0.01  Score=56.86  Aligned_cols=55  Identities=31%  Similarity=0.315  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C---C--eEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g--~~~~ad~VV~a~p~~~  220 (355)
                      +...+++.+++.|++|+++++|++|..++  +++++|++ +   |  .+++||.||.|+.++.
T Consensus       172 l~~~L~~~a~~~G~~i~~~~~V~~l~~~~--g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          172 LTLEIMKEAVARGAVALNYMKVESFIYDQ--GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEEET--TEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEcC--CeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            66788888888999999999999999977  45777875 2   3  4789999999999975

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.08  E-value=0.00099  Score=60.22  Aligned_cols=54  Identities=17%  Similarity=0.285  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|+.+++  + ++|.+++++++||.||+|+.++.
T Consensus       156 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~--~-~~V~t~~g~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          156 LHQGYLRGIRRNQGQVLCNHEALEIRRVDG--A-WEVRCDAGSYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHTTCEEESSCCCCEEEEETT--E-EEEECSSEEEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEEeCC--e-EEEEeCCCEEEcCEEEECCChhH
Confidence            678888889899999999999999998874  3 46888666999999999999875

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.00  E-value=0.04  Score=52.77  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +...+.+.+++.|++|+.+++|++|..++  +++++|++    +|+  +++||.||.|+.++.
T Consensus       190 l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~--~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          190 LVIDNIKKAAEDGAYLVSKMKAVGFLYEG--DQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCeEEeccEEEEEEEeC--CEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            55677777888999999999999999876  45777774    333  799999999999985

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.90  E-value=0.0028  Score=57.34  Aligned_cols=55  Identities=20%  Similarity=0.236  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+++|++|+.++  +++.+|.+++++++||.||+|+.++.
T Consensus       151 l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~v~gv~~~~g~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          151 ATTAFAVKAKEYGAKLLEYTEVKGFLIEN--NEIKGVKTNKGIIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEETTEEEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEECCceEEEEEEEC--CEEEEEEECCcEEECCEEEECcchhH
Confidence            66778888888999999999999999876  34766877656899999999999875

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=96.83  E-value=0.0035  Score=58.24  Aligned_cols=65  Identities=15%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      .++..+....+.+.|.+.+++.|++|+++++|++|..++  +++++|.+ +|++++||.||+|+....
T Consensus       126 ~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~--~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          126 MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN--GQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             EECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC--CcEEEEEECCCCEEECCEEEECCCCCc
Confidence            344333333477889988988999999999999999876  45677887 566799999999998765

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=96.73  E-value=0.0038  Score=57.96  Aligned_cols=60  Identities=25%  Similarity=0.354  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEe---------------cCCCCeEEEEEeCCeEE--ecCEEEEccChhhHHHhhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIY---------------DEERCCISDVVCGKETY--SAGAVVLAVGISTLQELIK  226 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~---------------~~~~~~v~~v~~~g~~~--~ad~VV~a~p~~~~~~l~~  226 (355)
                      +.+.|.+.+++.|++|+.+++|++|+.               ++  +++++|.++++++  +||.||+|+.++.. +|+.
T Consensus       183 l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~--~~v~~V~t~~g~i~~~Ad~VV~AtG~~s~-~l~~  259 (448)
T 3axb_A          183 VVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE--ARASAAVLSDGTRVEVGEKLVVAAGVWSN-RLLN  259 (448)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC--EEEEEEEETTSCEEEEEEEEEECCGGGHH-HHHG
T ss_pred             HHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCC--CceEEEEeCCCEEeecCCEEEECCCcCHH-HHHH
Confidence            677888888899999999999999998               44  4576787754478  99999999999853 4443

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=96.69  E-value=0.0037  Score=56.99  Aligned_cols=55  Identities=24%  Similarity=0.267  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|..++  +++++|.+++++++||.||+|+.++.
T Consensus       176 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          176 VAWAFARKANEMGVDIIQNCEVTGFIKDG--EKVTGVKTTRGTIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEETTCCEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEEeC--CEEEEEEeCCceEECCEEEECCchhH
Confidence            66788888888999999999999999876  44777887544899999999999875

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=96.68  E-value=0.004  Score=59.26  Aligned_cols=55  Identities=29%  Similarity=0.315  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|..++  +++++|++ +|++++||.||+|+....
T Consensus       222 l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~--~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          222 MIEKMRATIIELGGEIRFSTRVDDLHMED--GQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHTTCEEESSCCEEEEEESS--SBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEEeC--CEEEEEEECCCCEEECCEEEECCCCCh
Confidence            66778888888999999999999999877  44777887 577899999999998875

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.61  E-value=0.0056  Score=56.02  Aligned_cols=54  Identities=24%  Similarity=0.288  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..++  +++.+|.+ +|++++||.||+|+...
T Consensus       186 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~~V~~~dG~~i~aD~Vv~a~G~~  240 (404)
T 3fg2_P          186 ISSYFHDRHSGAGIRMHYGVRATEIAAEG--DRVTGVVLSDGNTLPCDLVVVGVGVI  240 (404)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHhCCcEEEECCEEEEEEecC--CcEEEEEeCCCCEEEcCEEEECcCCc
Confidence            66778888899999999999999999876  45777877 67899999999999764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.61  E-value=0.0054  Score=56.35  Aligned_cols=54  Identities=19%  Similarity=0.264  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..++  +++.+|.+ +|++++||.||+|+...
T Consensus       196 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~~v~l~dG~~i~aD~Vv~a~G~~  250 (415)
T 3lxd_A          196 LSEFYQAEHRAHGVDLRTGAAMDCIEGDG--TKVTGVRMQDGSVIPADIVIVGIGIV  250 (415)
T ss_dssp             HHHHHHHHHHHTTCEEEETCCEEEEEESS--SBEEEEEESSSCEEECSEEEECSCCE
T ss_pred             HHHHHHHHHHhCCCEEEECCEEEEEEecC--CcEEEEEeCCCCEEEcCEEEECCCCc
Confidence            66778888899999999999999999866  45767877 68899999999999764

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=96.55  E-value=0.0057  Score=55.07  Aligned_cols=54  Identities=19%  Similarity=0.389  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+++|++|+.++++  + .|.+++++++||.||+|+.++.
T Consensus       151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~-~v~~~~g~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG--V-TIETADGEYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSS--E-EEEESSCEEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE--E-EEEECCCeEEcCEEEEcCCccH
Confidence            6678888888899999999999999987642  4 5777555699999999999875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=96.52  E-value=0.0065  Score=54.98  Aligned_cols=54  Identities=19%  Similarity=0.416  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+++|++|+.++++  + .|.+++++++||.||+|+.++.
T Consensus       152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~--~-~v~~~~g~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          152 CIRAYRELAEARGAKVLTHTRVEDFDISPDS--V-KIETANGSYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSC--E-EEEETTEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEEcCcEEEEEEecCCe--E-EEEeCCCEEEeCEEEEecCccH
Confidence            6678888888899999999999999987642  4 5777767899999999999875

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=96.51  E-value=0.0062  Score=61.25  Aligned_cols=55  Identities=15%  Similarity=0.155  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|+.++  +++++|.+++++++||.||+|+.++.
T Consensus       153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~--~~v~~V~t~~G~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          153 AVQLLIKRTESAGVTYRGSTTVTGIEQSG--GRVTGVQTADGVIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTEEEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCEEECCceEEEEEEeC--CEEEEEEECCcEEECCEEEECCccch
Confidence            66888888989999999999999999876  44767888766899999999999986

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.49  E-value=0.0057  Score=60.05  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|+.+++  ++ .|.+ +|+++.||.||+|+..+.
T Consensus       419 l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~--~v-~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          419 LTRNVLELAQQQGLQIYYQYQLQNFSRKDD--CW-LLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEEEETT--EE-EEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHHhCCCEEEeCCeeeEEEEeCC--eE-EEEECCCCEEECCEEEECCCcch
Confidence            677888888889999999999999999874  35 6777 567899999999999874

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=96.47  E-value=0.0086  Score=56.64  Aligned_cols=56  Identities=21%  Similarity=0.300  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecC-EEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|..+++ |+|++|.+  +++  ++.|| .||+|+....
T Consensus       204 l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~-g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          204 LMKPLVETAEKLGVRAEYDMRVQTLVTDDT-GRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEECTT-CCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHcCCEEEecCEeEEEEECCC-CcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            778899999889999999999999999844 56888876  443  58996 9999998765

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=96.46  E-value=0.0078  Score=55.33  Aligned_cols=62  Identities=18%  Similarity=0.292  Sum_probs=49.4

Q ss_pred             EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      ++...... +.+.|.+.+++.|++|+++++|++|..+++  .+ .|.+++++++||.||+|+....
T Consensus       126 ~~~~~~~~-l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~--~~-~V~~~~g~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          126 FCDHSAKD-IIRMLMAEMKEAGVQLRLETSIGEVERTAS--GF-RVTTSAGTVDAASLVVASGGKS  187 (417)
T ss_dssp             EESSCHHH-HHHHHHHHHHHHTCEEECSCCEEEEEEETT--EE-EEEETTEEEEESEEEECCCCSS
T ss_pred             eeCCCHHH-HHHHHHHHHHHCCCEEEECCEEEEEEEeCC--EE-EEEECCcEEEeeEEEECCCCcc
Confidence            34333344 778898889889999999999999998774  24 6777656999999999999865

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.46  E-value=0.0063  Score=55.38  Aligned_cols=54  Identities=30%  Similarity=0.468  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|+.+++  .+ .|.+++++++||.||+|+.++.
T Consensus       155 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~--~v-~v~t~~g~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          155 TLAALFTLAQAAGATLRAGETVTELVPDAD--GV-SVTTDRGTYRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEEEETT--EE-EEEESSCEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCEEECCCEEEEEEEcCC--eE-EEEECCCEEEcCEEEEcCCcCh
Confidence            567788888889999999999999998764  35 4767666899999999999874

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.39  E-value=0.0062  Score=59.88  Aligned_cols=54  Identities=11%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe-EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE-TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~-~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|++|+.++++  + .|.+ +|+ +++||.||+|+..+.
T Consensus       414 l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~--v-~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          414 LTHALMMLAQQNGMTCHYQHELQRLKRIDSQ--W-QLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEEECSSS--E-EEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe--E-EEEeCCCcEEEECCEEEECCCcch
Confidence            6788888888899999999999999998753  4 6777 456 899999999999874

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.16  E-value=0.011  Score=54.90  Aligned_cols=54  Identities=13%  Similarity=0.201  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..++  +++..|.++|++++||.||+|++..
T Consensus       193 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~v~~v~~~g~~i~~D~vv~a~G~~  246 (452)
T 2cdu_A          193 FTDILAKDYEAHGVNLVLGSKVAAFEEVD--DEIITKTLDGKEIKSDIAILCIGFR  246 (452)
T ss_dssp             HHHHHHHHHHHTTCEEEESSCEEEEEEET--TEEEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHHCCCEEEcCCeeEEEEcCC--CeEEEEEeCCCEEECCEEEECcCCC
Confidence            66778888999999999999999998654  4465566688899999999999754

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=96.16  E-value=0.015  Score=55.78  Aligned_cols=58  Identities=19%  Similarity=0.230  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhh
Q 018455          162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~~  220 (355)
                      ..+.+.|.+.+++.|++|+++++|++|..+++ ++|++|.+   +|+  ++.||.||+|+....
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTT-SCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC-CeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            33678888888889999999999999998764 45777754   465  689999999998754

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=95.94  E-value=0.017  Score=55.38  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhh
Q 018455          162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~~  220 (355)
                      ..+.+.|.+.+++.|++|+++++|++|..+++ ++|++|.+   +|+  +++||.||+|+....
T Consensus       250 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD-HSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTT-SBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            33678888888889999999999999998763 35777764   565  689999999998765

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=95.89  E-value=0.022  Score=54.63  Aligned_cols=59  Identities=22%  Similarity=0.231  Sum_probs=45.8

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhh
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~~  220 (355)
                      +..+.+.|.+.+++.|++|+++++|++|..+++ ++|++|.+   +|+  ++.||.||+|+....
T Consensus       254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~-g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCEEEEEEECCC-CeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            334678888888889999999999999988753 34777765   464  689999999998654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=95.74  E-value=0.027  Score=51.45  Aligned_cols=54  Identities=13%  Similarity=0.107  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEec----CCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYD----EERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~----~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++.|++|+++++|++|..+    ++  .+ .|.+++++++||.||+|+....
T Consensus       111 l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~--~~-~v~~~~g~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          111 IVEMLKSECDKYGAKILLRSEVSQVERIQNDEKV--RF-VLQVNSTQWQCKNLIVATGGLS  168 (401)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSC--CE-EEEETTEEEEESEEEECCCCSS
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCC--eE-EEEECCCEEECCEEEECCCCcc
Confidence            6788888888899999999999999976    42  34 5777666899999999997765

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=95.69  E-value=0.025  Score=47.27  Aligned_cols=54  Identities=15%  Similarity=0.063  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++. |++|+ +++|++|..++  +++++|.+ +|++++||.||.|+....
T Consensus        70 ~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~--~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           70 FHARAKYLLEGLRPLHLF-QATATGLLLEG--NRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             HHHHHHHHHHTCTTEEEE-ECCEEEEEEET--TEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHHHHHHHcCCCcEEE-EeEEEEEEEeC--CEEEEEEECCCCEEECCEEEECCCCCh
Confidence            556677778876 88998 68999999876  45767777 567899999999998854

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=95.68  E-value=0.033  Score=51.64  Aligned_cols=56  Identities=23%  Similarity=0.254  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~~  221 (355)
                      +.+.|.+.+.+.|++|+++++|++|..++  +++++|++    +|+  +++||.||.|+.....
T Consensus       102 l~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A          102 YNQRVLKEAQDRGVEIWDLTTAMKPIFED--GYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             HHHHHHHHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             HHHHHHHHHHHcCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence            56778888888899999999999999876  44655654    565  7999999999998753

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.65  E-value=0.029  Score=51.74  Aligned_cols=54  Identities=20%  Similarity=0.383  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEe--cCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIY--DEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~--~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..  ++  +++.+|.+ +|++++||.||+|++..
T Consensus       193 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--~~v~~v~~~~G~~i~~D~Vv~a~G~~  249 (431)
T 1q1r_A          193 VSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ--QKVTAVLCEDGTRLPADLVIAGIGLI  249 (431)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEECTTT--CCEEEEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEeccCC--CcEEEEEeCCCCEEEcCEEEECCCCC
Confidence            566778888899999999999999987  44  34656777 67889999999999753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=95.61  E-value=0.025  Score=52.55  Aligned_cols=56  Identities=11%  Similarity=0.112  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      ..-+.+.+.+.+++.|++|+++++|++|+.+++  ++ .|.+++++++||.||+|++..
T Consensus       188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~v-~v~~~~g~i~aD~Vv~A~G~~  243 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETAN--GI-VLETSEQEISCDSGIFALNLH  243 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEETCCEEEEEECSS--CE-EEEESSCEEEESEEEECSCCB
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCC--eE-EEEECCCEEEeCEEEECcCCC
Confidence            333667788889999999999999999997663  36 677765599999999998753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.59  E-value=0.034  Score=51.91  Aligned_cols=55  Identities=20%  Similarity=0.265  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      .-+.+.+.+.+++.|++|+++++|++|+.++  +++. |.+ +|++++||.||+|+...
T Consensus       202 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~-v~~~~g~~i~aD~Vv~a~G~~  257 (472)
T 3iwa_A          202 KSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN--GKVA-RVITDKRTLDADLVILAAGVS  257 (472)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEE-EEEESSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEccC--CeEE-EEEeCCCEEEcCEEEECCCCC
Confidence            3366778888999999999999999998865  3454 544 78899999999999864

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=95.59  E-value=0.03  Score=52.72  Aligned_cols=54  Identities=19%  Similarity=0.142  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +...+.+.+++.|++|+.+++|++|..+++   +++|++    +|+  +++||.||.|+.++.
T Consensus       151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~---~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          151 LVLANAQMVVRKGGEVLTRTRATSARRENG---LWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETT---EEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEeCC---EEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            667888888889999999999999998752   557765    454  789999999999985

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=95.57  E-value=0.031  Score=44.52  Aligned_cols=53  Identities=15%  Similarity=0.099  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++.|++|+++ +|++|+.++++  + .|.+++++++||.||+|+....
T Consensus        58 ~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~--~-~v~~~~g~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           58 LLRRLEAHARRYGAEVRPG-VVKGVRDMGGV--F-EVETEEGVEKAERLLLCTHKDP  110 (180)
T ss_dssp             HHHHHHHHHHHTTCEEEEC-CCCEEEECSSS--E-EEECSSCEEEEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHcCCEEEeC-EEEEEEEcCCE--E-EEEECCCEEEECEEEECCCCCC
Confidence            6677788888899999999 99999987642  3 5766433899999999998763

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=95.50  E-value=0.035  Score=50.74  Aligned_cols=56  Identities=14%  Similarity=0.112  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~--~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+++|++|+.+++ +.++.|.+ +|+  +++||.||.|+....
T Consensus       108 ~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~-~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          108 FDKTLADEAARQGVDVEYEVGVTDIKFFGT-DSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHHTCEEECSEEEEEEEEETT-EEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEEeCC-EEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            567788888888999999999999998875 32334554 565  699999999998875

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=95.47  E-value=0.044  Score=52.68  Aligned_cols=57  Identities=12%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC----------------CeEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----------------KETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~----------------g~~~~ad~VV~a~p~~~~  221 (355)
                      +.+.|.+.+++.|++|+.+++|++|..+++ |+|++|.+.                |.+++||.||.|......
T Consensus       146 l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~-g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          146 LVSWMGEQAEALGVEVYPGYAAAEILFHED-GSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEEECTT-SSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-CCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            667788888888999999999999998765 457667663                257999999999998753

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=95.46  E-value=0.023  Score=53.63  Aligned_cols=59  Identities=14%  Similarity=0.112  Sum_probs=44.1

Q ss_pred             HHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe---CC-----eEEecCEEEEccChhhHHHhh
Q 018455          167 PWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GK-----ETYSAGAVVLAVGISTLQELI  225 (355)
Q Consensus       167 ~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-----~~~~ad~VV~a~p~~~~~~l~  225 (355)
                      .+.+.+.+.| ++|+++++|++|..+++++++++|.+   +|     .++.|+.||+|+.+....+|+
T Consensus       226 ~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL  293 (504)
T 1n4w_A          226 TYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELL  293 (504)
T ss_dssp             THHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHH
Confidence            3444445555 89999999999999864347888876   45     368899999999987665554

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=95.44  E-value=0.036  Score=52.55  Aligned_cols=55  Identities=22%  Similarity=0.268  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeE--EEEEe-CCe-EEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCI--SDVVC-GKE-TYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v--~~v~~-~g~-~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++ +++  ..|.+ +|+ +++||.||+|+...
T Consensus       257 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~  315 (523)
T 1mo9_A          257 TRAYVLDRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETDFVFLGLGEQ  315 (523)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECSCEEECCCCE
T ss_pred             HHHHHHHHHHhCCcEEEECCEEEEEEEcCC-CceEEEEEEECCCcEEEEcCEEEECcCCc
Confidence            667788889999999999999999997654 443  34666 566 89999999999743

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.41  E-value=0.028  Score=51.43  Aligned_cols=53  Identities=17%  Similarity=0.213  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..++   ++.+|.+ +|++++||.||+|++..
T Consensus       187 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~---~~~~v~~~dg~~i~aD~Vv~a~G~~  240 (410)
T 3ef6_A          187 IGAWLRGLLTELGVQVELGTGVVGFSGEG---QLEQVMASDGRSFVADSALICVGAE  240 (410)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEECSS---SCCEEEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEeccC---cEEEEEECCCCEEEcCEEEEeeCCe
Confidence            55667788888999999999999998754   2456777 78899999999999764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=95.40  E-value=0.036  Score=52.84  Aligned_cols=55  Identities=16%  Similarity=0.184  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++. |++|+++ +|++|..+++ +.+++|++ +|++++||.||.|+..+.
T Consensus       196 l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~-g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          196 VADFLRRFATEKLGVRHVED-RVEHVQRDAN-GNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHHHHSCCEEEEC-CEEEEEECTT-SCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHhcCCcEEEEC-eEeEEEEcCC-CCEEEEEECCCCEEECCEEEECCCCch
Confidence            667788888888 9999999 9999998655 45557777 577899999999998865

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=95.39  E-value=0.032  Score=50.66  Aligned_cols=60  Identities=18%  Similarity=0.181  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEE-EEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCIS-DVVC-GKETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~-~v~~-~g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +.+.|.+.+++. |++|+++++|++|+.++++  ++ .|++ +|++++||.||.|+..+.. .+.+
T Consensus       109 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~l  172 (399)
T 2x3n_A          109 LRRLVLEKIDGEATVEMLFETRIEAVQRDERH--AIDQVRLNDGRVLRPRVVVGADGIASYVRRRL  172 (399)
T ss_dssp             HHHHHHHHHTTCTTEEEECSCCEEEEEECTTS--CEEEEEETTSCEEEEEEEEECCCTTCHHHHHT
T ss_pred             HHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCc--eEEEEEECCCCEEECCEEEECCCCChHHHHHh
Confidence            667788888777 8999999999999988753  42 4666 6778999999999998753 4444

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=95.31  E-value=0.044  Score=51.69  Aligned_cols=55  Identities=20%  Similarity=0.130  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+ +|++|..+++ +.+++|++ +|++++||.||.|+..+.
T Consensus       175 l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          175 VARYLSEYAIARGVRHVVD-DVQHVGQDER-GWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             HHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHCCCEEEEC-eEeEEEEcCC-CCEEEEEECCCCEEEcCEEEECCCcch
Confidence            6677888888889999999 9999998655 45557777 566899999999999875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=95.31  E-value=0.014  Score=53.41  Aligned_cols=54  Identities=17%  Similarity=0.161  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceee---------EEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVT---------DFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~---------~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+++|+         +|..++  +++ +|.+++++++||.||+|+.++.
T Consensus       174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~--~~v-~v~~~~g~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTN--THQ-IVVHETRQIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CBCCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeC--CeE-EEEECCcEEECCEEEECCCccH
Confidence            66788888888999999999999         888766  335 6777666899999999999875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.28  E-value=0.043  Score=51.40  Aligned_cols=53  Identities=26%  Similarity=0.359  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|+.+++  ++ .|++ +|++++||.||+|++..
T Consensus       234 ~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~--~v-~v~~~~g~~i~aD~Vi~A~G~~  287 (484)
T 3o0h_A          234 LRQLLNDAMVAKGISIIYEATVSQVQSTEN--CY-NVVLTNGQTICADRVMLATGRV  287 (484)
T ss_dssp             HHHHHHHHHHHHTCEEESSCCEEEEEECSS--SE-EEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEeeCC--EE-EEEECCCcEEEcCEEEEeeCCC
Confidence            667788888889999999999999998764  25 5666 67789999999999753

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.28  E-value=0.042  Score=51.68  Aligned_cols=54  Identities=17%  Similarity=0.247  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++ +.+ .|++ +|++++||.||+|+...
T Consensus       237 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~-~v~~~~G~~i~~D~vv~a~G~~  291 (495)
T 2wpf_A          237 IREEVTKQLTANGIEIMTNENPAKVSLNTD-GSK-HVTFESGKTLDVDVVMMAIGRI  291 (495)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEEECTT-SCE-EEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-ceE-EEEECCCcEEEcCEEEECCCCc
Confidence            567788888999999999999999997654 223 5666 67789999999999753

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=95.24  E-value=0.048  Score=51.45  Aligned_cols=55  Identities=16%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+++|++|..++  +++.+|++   +|  .+++||.||.|+..+.
T Consensus       113 l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~--~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          113 FDDMLLRNSERKGVDVRERHEVIDVLFEG--ERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEEEET--TEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEEEC--CEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            66778888888999999999999999976  45666654   35  3899999999999864

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=95.21  E-value=0.041  Score=51.63  Aligned_cols=54  Identities=15%  Similarity=0.190  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++ +.+ .|++ +|++++||.||+|+...
T Consensus       233 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~-~v~~~~G~~i~~D~vv~a~G~~  287 (490)
T 1fec_A          233 LRKQLTEQLRANGINVRTHENPAKVTKNAD-GTR-HVVFESGAEADYDVVMLAIGRV  287 (490)
T ss_dssp             HHHHHHHHHHHTTEEEEETCCEEEEEECTT-SCE-EEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CEE-EEEECCCcEEEcCEEEEccCCC
Confidence            667788888999999999999999998654 223 5666 67789999999999753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.12  E-value=0.049  Score=50.92  Aligned_cols=54  Identities=9%  Similarity=0.073  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC-eEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g-~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|++|+.+++ +++..|.+ +| ++++||.||+|+..
T Consensus       228 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~~v~~~~G~~~i~~D~vv~a~G~  283 (479)
T 2hqm_A          228 IQNTITDHYVKEGINVHKLSKIVKVEKNVE-TDKLKIHMNDSKSIDDVDELIWTIGR  283 (479)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEECC--CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEEcCC-CcEEEEEECCCcEEEEcCEEEECCCC
Confidence            667788888899999999999999987653 32235666 67 78999999999974

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=95.10  E-value=0.05  Score=51.16  Aligned_cols=53  Identities=13%  Similarity=0.172  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|+.+++  ++ .|.+ +|++++||.||+|+...
T Consensus       225 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~--~v-~v~~~~g~~i~aD~Vv~a~G~~  278 (499)
T 1xdi_A          225 AALVLEESFAERGVRLFKNARAASVTRTGA--GV-LVTMTDGRTVEGSHALMTIGSV  278 (499)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEEECSS--SE-EEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCC--EE-EEEECCCcEEEcCEEEECCCCC
Confidence            667788888999999999999999997663  25 4655 57789999999998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=95.08  E-value=0.069  Score=46.66  Aligned_cols=54  Identities=17%  Similarity=0.290  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C----C--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G----K--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~----g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..++  +++.+|++ +    |  ++++||.||+|++..
T Consensus       186 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~  246 (320)
T 1trb_A          186 LIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS  246 (320)
T ss_dssp             HHHHHHHHHHTSSEEEECSCEEEEEEECS--SSEEEEEEECCTTCCCCEEEECSEEEECSCEE
T ss_pred             HHHHHHHhcccCCeEEEcCceeEEEEcCC--CceEEEEEEeccCCCceEEEEcCEEEEEeCCC
Confidence            55667777888999999999999998765  34656665 3    4  579999999999754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=95.08  E-value=0.048  Score=50.71  Aligned_cols=53  Identities=19%  Similarity=0.146  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEE-e-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-C-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~-~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|+.+++ +.+ .|. + +|+ ++||.||+|+...
T Consensus       213 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~-~v~~~~~g~-i~aD~Vv~a~G~~  267 (463)
T 4dna_A          213 MRRGLHAAMEEKGIRILCEDIIQSVSADAD-GRR-VATTMKHGE-IVADQVMLALGRM  267 (463)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECTT-SCE-EEEESSSCE-EEESEEEECSCEE
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEcCC-CEE-EEEEcCCCe-EEeCEEEEeeCcc
Confidence            667788889999999999999999998764 333 577 6 566 9999999999753

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=95.07  E-value=0.052  Score=50.98  Aligned_cols=53  Identities=15%  Similarity=0.163  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..++  +++ .|++ +|++++||.||+|+...
T Consensus       228 ~~~~~~~~l~~~GV~v~~~~~V~~i~~~~--~~~-~v~l~dG~~i~aD~Vv~a~G~~  281 (493)
T 1m6i_A          228 LSNWTMEKVRREGVKVMPNAIVQSVGVSS--GKL-LIKLKDGRKVETDHIVAAVGLE  281 (493)
T ss_dssp             HHHHHHHHHHTTTCEEECSCCEEEEEEET--TEE-EEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEecC--CeE-EEEECCCCEEECCEEEECCCCC
Confidence            56677788889999999999999998765  334 5666 67899999999998753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=95.04  E-value=0.064  Score=49.94  Aligned_cols=53  Identities=17%  Similarity=0.176  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..++  + ...|.+++++++||.||+|+...
T Consensus       218 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~-~~~v~~~~~~i~aD~Vv~a~G~~  270 (467)
T 1zk7_A          218 IGEAVTAAFRAEGIEVLEHTQASQVAHMD--G-EFVLTTTHGELRADKLLVATGRT  270 (467)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEEEET--T-EEEEEETTEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEEeC--C-EEEEEECCcEEEcCEEEECCCCC
Confidence            66778888999999999999999998765  3 33577778899999999998754

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=95.00  E-value=0.059  Score=51.83  Aligned_cols=58  Identities=14%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      ..+.+.|.+.+.+.|++|+++++|++|..+++ ++|.+|.+    +|+  ++.|+.||+|+....
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~-g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence            34678888888888999999999999998633 56777764    354  689999999998854

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=94.96  E-value=0.055  Score=48.92  Aligned_cols=53  Identities=19%  Similarity=0.199  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++  .+ .|.+ +|++++||.||+|+...
T Consensus       189 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~~g~~i~~d~vv~a~G~~  242 (384)
T 2v3a_A          189 AAKAVQAGLEGLGVRFHLGPVLASLKKAGE--GL-EAHLSDGEVIPCDLVVSAVGLR  242 (384)
T ss_dssp             HHHHHHHHHHTTTCEEEESCCEEEEEEETT--EE-EEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEecCC--EE-EEEECCCCEEECCEEEECcCCC
Confidence            567788888889999999999999997653  24 5666 67889999999999764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=94.90  E-value=0.061  Score=49.87  Aligned_cols=53  Identities=11%  Similarity=0.211  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|++|+.+++ +.+ .|++ +|++++||.||+|+..
T Consensus       210 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~i~~D~vv~a~G~  263 (450)
T 1ges_A          210 ISETLVEVMNAEGPQLHTNAIPKAVVKNTD-GSL-TLELEDGRSETVDCLIWAIGR  263 (450)
T ss_dssp             HHHHHHHHHHHHSCEEECSCCEEEEEECTT-SCE-EEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-cEE-EEEECCCcEEEcCEEEECCCC
Confidence            667788888899999999999999997654 223 5666 6778999999999864

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=94.86  E-value=0.045  Score=51.63  Aligned_cols=59  Identities=15%  Similarity=0.137  Sum_probs=43.5

Q ss_pred             HHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe---CC-----eEEecCEEEEccChhhHHHhh
Q 018455          167 PWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GK-----ETYSAGAVVLAVGISTLQELI  225 (355)
Q Consensus       167 ~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-----~~~~ad~VV~a~p~~~~~~l~  225 (355)
                      ++...+.+.| ++|+++++|++|..+++++++++|.+   +|     .+++|+.||+|+.+....+|+
T Consensus       231 ~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL  298 (507)
T 1coy_A          231 TYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL  298 (507)
T ss_dssp             THHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHH
Confidence            3444444454 89999999999999864236888876   45     367899999999987665554

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=94.68  E-value=0.081  Score=51.13  Aligned_cols=56  Identities=11%  Similarity=0.132  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      .+...|.+.+.+.|++|+.+++|.+|..++  |+|.+|.+    +|+  ++.|+.||+|+....
T Consensus       156 ~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          156 SLLHTLYGRSLRYDTSYFVEYFALDLLMEN--GECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHHHHHHTTSCCEEEETEEEEEEEEET--TEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHhCCCEEEEceEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            467788888888899999999999999875  56777764    354  689999999998765

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=94.64  E-value=0.054  Score=50.83  Aligned_cols=52  Identities=21%  Similarity=0.380  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|++|.. +  +++..|.++|++++||.||+|+..
T Consensus       238 ~~~~l~~~l~~~GV~i~~~~~v~~i~~-~--~~v~~v~~~g~~i~~D~Vi~a~G~  289 (490)
T 2bc0_A          238 LTDLMAKNMEEHGIQLAFGETVKEVAG-N--GKVEKIITDKNEYDVDMVILAVGF  289 (490)
T ss_dssp             HHHHHHHHHHTTTCEEEETCCEEEEEC-S--SSCCEEEESSCEEECSEEEECCCE
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEc-C--CcEEEEEECCcEEECCEEEECCCC
Confidence            667788888899999999999999986 3  335456678889999999999974

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=94.58  E-value=0.098  Score=45.13  Aligned_cols=53  Identities=17%  Similarity=0.224  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe----------CC-----eEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----------GK-----ETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------~g-----~~~~ad~VV~a~p~  218 (355)
                      +...+.+.+.+ .|++|+++++|++|..++  +++.+|.+          +|     .+++||.||+|+..
T Consensus       121 ~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~--~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~  189 (284)
T 1rp0_A          121 FTSTIMSKLLARPNVKLFNAVAAEDLIVKG--NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGH  189 (284)
T ss_dssp             HHHHHHHHHHTSTTEEEEETEEEEEEEEET--TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHhcCCCEEEcCcEEEEEEecC--CeEEEEEEeccccccccCccccCceEEEECCEEEECCCC
Confidence            45567776655 699999999999999876  45666654          22     67999999999985

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=94.56  E-value=0.083  Score=50.15  Aligned_cols=55  Identities=16%  Similarity=0.165  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++++.+ +|++|..+++ +.+++|++ +|++++||.||.|+..+.
T Consensus       167 l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-g~~~~v~~~~g~~i~ad~vV~A~G~~s  222 (538)
T 2aqj_A          167 VADFLKRWAVERGVNRVVD-EVVDVRLNNR-GYISNLLTKEGRTLEADLFIDCSGMRG  222 (538)
T ss_dssp             HHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred             HHHHHHHHHHHCCCEEEEe-eEeEEEEcCC-CcEEEEEECCCcEEEeCEEEECCCCch
Confidence            6677888888889999999 8999998665 44556777 566899999999998865

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=94.52  E-value=0.097  Score=51.00  Aligned_cols=56  Identities=14%  Similarity=0.157  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      .+...|.+.+.+.|++|+.+++|.+|..++  |+|.+|.+    +|+  .+.|+.||+|+....
T Consensus       159 ~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          159 TMLFAVANECLKLGVSIQDRKEAIALIHQD--GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHhCCCEEEECcEEEEEEecC--CEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            377888888888899999999999999865  56777754    354  589999999998765

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.40  E-value=0.099  Score=49.14  Aligned_cols=54  Identities=11%  Similarity=0.116  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeE-EecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKET-YSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~-~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++ +.+ .|.+ +|++ ++||.||+|++..
T Consensus       219 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~~~~~D~vi~a~G~~  274 (500)
T 1onf_A          219 VINVLENDMKKNNINIVTFADVVEIKKVSD-KNL-SIHLSDGRIYEHFDHVIYCVGRS  274 (500)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEESST-TCE-EEEETTSCEEEEESEEEECCCBC
T ss_pred             hHHHHHHHHHhCCCEEEECCEEEEEEEcCC-ceE-EEEECCCcEEEECCEEEECCCCC
Confidence            667788889999999999999999987654 223 4666 6776 9999999999753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=94.34  E-value=0.13  Score=48.09  Aligned_cols=53  Identities=26%  Similarity=0.338  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..++   ++..|.+++++++||.||+|+...
T Consensus       229 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~---~v~~v~~~~~~i~~D~vi~a~G~~  281 (480)
T 3cgb_A          229 MAEYIYKEADKHHIEILTNENVKAFKGNE---RVEAVETDKGTYKADLVLVSVGVK  281 (480)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEESS---BEEEEEETTEEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHcCcEEEcCCEEEEEEcCC---cEEEEEECCCEEEcCEEEECcCCC
Confidence            66778888889999999999999998642   365677787899999999999754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=94.33  E-value=0.095  Score=48.57  Aligned_cols=53  Identities=25%  Similarity=0.301  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++  .+ .+.+ +|++++||.||+|+...
T Consensus       210 ~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~--~v-~v~~~~g~~i~~D~vv~A~G~~  263 (455)
T 2yqu_A          210 VSRAAERVFKKQGLTIRTGVRVTAVVPEAK--GA-RVELEGGEVLEADRVLVAVGRR  263 (455)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEEETT--EE-EEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHCCCEEEECCEEEEEEEeCC--EE-EEEECCCeEEEcCEEEECcCCC
Confidence            667788888889999999999999998763  24 4665 67889999999999754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=94.32  E-value=0.094  Score=46.39  Aligned_cols=54  Identities=19%  Similarity=0.083  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEE-EEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~-v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++.|++++++++|++|..+++  .+ . |.++++++.||.||+|+....
T Consensus        78 ~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~--~~-~~v~~~~g~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           78 VLAYLAQYEQKYALPVLRPIRVQRVSHFGE--RL-RVVARDGRQWLARAVISATGTWG  132 (357)
T ss_dssp             HHHHHHHHHHHTTCCEECSCCEEEEEEETT--EE-EEEETTSCEEEEEEEEECCCSGG
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEECCC--cE-EEEEeCCCEEEeCEEEECCCCCC
Confidence            556677777888999999999999998773  23 4 777655999999999999644

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=94.20  E-value=0.11  Score=49.89  Aligned_cols=55  Identities=22%  Similarity=0.176  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CC--eEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g--~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+++|++|..+++  .+++|++  +|  .+++||.||.|+....
T Consensus       130 l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g--~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          130 FDKLLLDEARSRGITVHEETPVTDVDLSDP--DRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEECCST--TCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--CEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            667788888889999999999999998743  2456765  56  5899999999998875

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=94.19  E-value=0.097  Score=50.37  Aligned_cols=54  Identities=19%  Similarity=0.109  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++ .|++| ++++|++|..++  ++|++|.+ +|.++.||.||+|+....
T Consensus       125 ~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~--g~V~GV~t~dG~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          125 YREYMKKVCENQENLYI-KQEEVVDIIVKN--NQVVGVRTNLGVEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             HHHHHHHHHHTCTTEEE-EESCEEEEEESS--SBEEEEEETTSCEEECSEEEECCTTCB
T ss_pred             HHHHHHHHHHhCCCCEE-EEeEEEEEEecC--CEEEEEEECCCcEEEeCEEEEccCCCc
Confidence            66778888877 58999 688999999876  45778887 677899999999999753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=94.19  E-value=0.11  Score=48.18  Aligned_cols=52  Identities=19%  Similarity=0.178  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe-EEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE-TYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~-~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|++|..++++  + .|++ +|+ ++++|.||+|+..
T Consensus       209 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~-~v~~~~G~~~i~~D~vv~a~G~  262 (463)
T 2r9z_A          209 LSATLAENMHAQGIETHLEFAVAALERDAQG--T-TLVAQDGTRLEGFDSVIWAVGR  262 (463)
T ss_dssp             HHHHHHHHHHHTTCEEESSCCEEEEEEETTE--E-EEEETTCCEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCe--E-EEEEeCCcEEEEcCEEEECCCC
Confidence            5677788888999999999999999976642  4 5666 677 8999999999864

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=94.17  E-value=0.13  Score=48.73  Aligned_cols=55  Identities=11%  Similarity=0.175  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++ .|++|+.+ +|++|..+++ +.+++|++ +|++++||.||.|+..+.
T Consensus       177 l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~-g~~~~v~~~~g~~i~ad~vV~AdG~~S  233 (526)
T 2pyx_A          177 FSQLLTEHCTQKLGVTHIRD-HVSQIINNQH-GDIEKLITKQNGEISGQLFIDCTGAKS  233 (526)
T ss_dssp             HHHHHHHHHHHTSCCEEEEC-CEEEEEECTT-SCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred             HHHHHHHHHHhcCCCEEEEe-EEEEEEecCC-CcEEEEEECCCCEEEcCEEEECCCcch
Confidence            66778888888 89999999 5999998765 44546766 567799999999998864

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=94.12  E-value=0.1  Score=50.36  Aligned_cols=54  Identities=20%  Similarity=0.158  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++ .|++| ++++|++|..++  ++|++|.+ +|.++.||.||+|+....
T Consensus       126 ~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~--g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          126 YRQAVRTALENQPNLMI-FQQAVEDLIVEN--DRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             HHHHHHHHHHTCTTEEE-EECCEEEEEESS--SBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             HHHHHHHHHHhCCCCEE-EEEEEEEEEecC--CEEEEEEECCCCEEECCEEEEcCCCCc
Confidence            56777778877 68999 688999999876  45778887 577899999999999754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=94.12  E-value=0.08  Score=48.94  Aligned_cols=53  Identities=26%  Similarity=0.405  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..++   ++..|.++|++++||.||+|+...
T Consensus       193 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~---~v~~v~~~~~~i~~d~vi~a~G~~  245 (447)
T 1nhp_A          193 FTDVLTEEMEANNITIATGETVERYEGDG---RVQKVVTDKNAYDADLVVVAVGVR  245 (447)
T ss_dssp             HHHHHHHHHHTTTEEEEESCCEEEEECSS---BCCEEEESSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEccC---cEEEEEECCCEEECCEEEECcCCC
Confidence            66778888888999999999999998652   244566788889999999999753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.07  E-value=0.12  Score=46.07  Aligned_cols=54  Identities=19%  Similarity=0.165  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++.|++|+++++|++|..++++  + .|.++++++.||.||+|+....
T Consensus        90 ~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~-~v~~~~g~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           90 YAEYLQVVANHYELNIFENTVVTNISADDAY--Y-TIATTTETYHADYIFVATGDYN  143 (369)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSS--E-EEEESSCCEEEEEEEECCCSTT
T ss_pred             HHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--E-EEEeCCCEEEeCEEEECCCCCC
Confidence            4455666677789999999999999987642  3 5666555799999999998753

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=93.99  E-value=0.13  Score=48.72  Aligned_cols=61  Identities=20%  Similarity=0.245  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCC--eEEEEEe-CC---eEEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC--CISDVVC-GK---ETYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~--~v~~v~~-~g---~~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+.|.+.+++.|++|+++++|++|+.++++.  .+. +++ ++   .+++||.||.|...+. ..+.+
T Consensus       122 l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~-v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~l  189 (535)
T 3ihg_A          122 LEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVT-ARLAGPDGEYDLRAGYLVGADGNRSLVRESL  189 (535)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEE-EEEEETTEEEEEEEEEEEECCCTTCHHHHHT
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEE-EEEEcCCCeEEEEeCEEEECCCCcchHHHHc
Confidence            66778888888899999999999999987510  353 444 44   6899999999999875 34444

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=93.80  E-value=0.16  Score=49.03  Aligned_cols=57  Identities=19%  Similarity=0.212  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          162 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       162 ~~l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      ..+...|.+.+.+.| ++|+.+++|++|..++  ++|.+|..    +|+  ++.|+.||+|+....
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s  197 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence            336678888888888 9999999999999876  55777643    465  689999999998864

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=93.77  E-value=0.2  Score=47.12  Aligned_cols=59  Identities=19%  Similarity=0.228  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe---EEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE---TYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~---~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+.|.+.+++.|++|+++++|++|++++++  |. |++ +++   +++||.||.|...+. ..+.+
T Consensus       109 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~l  172 (499)
T 2qa2_A          109 TESVLEEWALGRGAELLRGHTVRALTDEGDH--VV-VEVEGPDGPRSLTTRYVVGCDGGRSTVRKAA  172 (499)
T ss_dssp             HHHHHHHHHHHTTCEEEESCEEEEEEECSSC--EE-EEEECSSCEEEEEEEEEEECCCTTCHHHHHT
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE--EE-EEEEcCCCcEEEEeCEEEEccCcccHHHHHc
Confidence            5667778888889999999999999998753  53 655 443   799999999999975 45554

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.76  E-value=0.13  Score=45.04  Aligned_cols=52  Identities=10%  Similarity=0.082  Sum_probs=39.5

Q ss_pred             HHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-C-----CeEEecCEEEEccChh
Q 018455          166 EPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-G-----KETYSAGAVVLAVGIS  219 (355)
Q Consensus       166 ~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-----g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+. |++|+++++|.+|..+++  ++.+|++ +     +++++||.||+|++..
T Consensus       212 ~~~~~~l~~~~gv~i~~~~~v~~i~~~~~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~  270 (338)
T 3itj_A          212 TIMQKRAEKNEKIEILYNTVALEAKGDGK--LLNALRIKNTKKNEETDLPVSGLFYAIGHT  270 (338)
T ss_dssp             HHHHHHHHHCTTEEEECSEEEEEEEESSS--SEEEEEEEETTTTEEEEEECSEEEECSCEE
T ss_pred             HHHHHHHHhcCCeEEeecceeEEEEcccC--cEEEEEEEECCCCceEEEEeCEEEEEeCCC
Confidence            3455666555 999999999999998763  3656665 2     3578999999999864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=93.73  E-value=0.16  Score=45.59  Aligned_cols=57  Identities=14%  Similarity=0.157  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK  226 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~~  226 (355)
                      +.+.|.+.+.+.|++|+++++|++|+.  + +   .|++ +|++++||.||.|+.... ..+.+.
T Consensus       109 l~~~L~~~~~~~gv~i~~~~~v~~i~~--~-~---~v~~~~g~~~~ad~vV~AdG~~s~vr~~l~  167 (379)
T 3alj_A          109 LHDALVNRARALGVDISVNSEAVAADP--V-G---RLTLQTGEVLEADLIVGADGVGSKVRDSIG  167 (379)
T ss_dssp             HHHHHHHHHHHTTCEEESSCCEEEEET--T-T---EEEETTSCEEECSEEEECCCTTCHHHHHHC
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEe--C-C---EEEECCCCEEEcCEEEECCCccHHHHHHhc
Confidence            567788888888999999999999987  3 4   3555 677899999999999875 344443

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=93.54  E-value=0.21  Score=46.51  Aligned_cols=53  Identities=19%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC---eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g---~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|+.+++  .+ .|++ ++   +++++|.||+|+...
T Consensus       223 ~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~--~~-~v~~~~~~g~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          223 VAKEAQKILTKQGLKILLGARVTGTEVKNK--QV-TVKFVDAEGEKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             HHHHHHHHHHHTTEEEEETCEEEEEEECSS--CE-EEEEESSSEEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHhCCCEEEECCEEEEEEEcCC--EE-EEEEEeCCCcEEEECCEEEEeeCCc
Confidence            667788888899999999999999998764  24 3444 33   579999999999753

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=93.51  E-value=0.27  Score=44.31  Aligned_cols=56  Identities=9%  Similarity=-0.014  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~~~  221 (355)
                      +.+.|.+.+.+.|++|+++++|++|+.+++ +.+ .|++  +|+  +++||.||.|...+..
T Consensus       105 l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~-~~~-~v~~~~~g~~~~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          105 VTRDLMEAREACGATTVYQAAEVRLHDLQG-ERP-YVTFERDGERLRLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEECTTS-SSC-EEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             HHHHHHHHHHhcCCeEEeceeEEEEEEecC-Cce-EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            556677777778999999999999998643 224 4554  676  7999999999998753

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=93.48  E-value=0.16  Score=45.29  Aligned_cols=54  Identities=9%  Similarity=0.027  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|.+|..++  +++.+|.+   +|  +++++|.||+|++..
T Consensus       204 ~~~~l~~~~~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~  262 (360)
T 3ab1_A          204 TAHEVERARANGTIDVYLETEVASIEESN--GVLTRVHLRSSDGSKWTVEADRLLILIGFK  262 (360)
T ss_dssp             HHHSSHHHHHHTSEEEESSEEEEEEEEET--TEEEEEEEEETTCCEEEEECSEEEECCCBC
T ss_pred             HHHHHHHHhhcCceEEEcCcCHHHhccCC--CceEEEEEEecCCCeEEEeCCEEEECCCCC
Confidence            44566777778899999999999999865  44555655   56  578999999999753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=93.38  E-value=0.18  Score=48.06  Aligned_cols=54  Identities=15%  Similarity=0.309  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEec------------------CCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYD------------------EERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~------------------~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|.+|..+                  ++ +++. +++ +|++++||.||+|+...
T Consensus       194 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~-v~~~~g~~i~~D~vi~a~G~~  266 (565)
T 3ntd_A          194 MAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIK-GHLS-LTLSNGELLETDLLIMAIGVR  266 (565)
T ss_dssp             HHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTT-CEEE-EEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCC-CcEE-EEEcCCCEEEcCEEEECcCCc
Confidence            5667778888999999999999999873                  22 3453 444 67899999999999753

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=93.33  E-value=0.21  Score=46.92  Aligned_cols=59  Identities=19%  Similarity=0.160  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe---EEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE---TYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~---~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+.|.+.+++.|++|+++++|++|++++++  |+ |++ +++   +++||.||.|...+. ..+.+
T Consensus       108 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~l  171 (500)
T 2qa1_A          108 TETHLEQWATGLGADIRRGHEVLSLTDDGAG--VT-VEVRGPEGKHTLRAAYLVGCDGGRSSVRKAA  171 (500)
T ss_dssp             HHHHHHHHHHHTTCEEEETCEEEEEEEETTE--EE-EEEEETTEEEEEEESEEEECCCTTCHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEECCcEEEEEEEcCCe--EE-EEEEcCCCCEEEEeCEEEECCCcchHHHHHc
Confidence            5567778888889999999999999998753  53 555 432   799999999999875 34554

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=93.33  E-value=0.19  Score=45.85  Aligned_cols=49  Identities=18%  Similarity=0.212  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|.  +  +   .|++ +|++++||.||+|++..
T Consensus       189 ~~~~l~~~l~~~GV~i~~~~~v~~i~--~--~---~v~~~~g~~i~~D~vi~a~G~~  238 (408)
T 2gqw_A          189 LADFVARYHAAQGVDLRFERSVTGSV--D--G---VVLLDDGTRIAADMVVVGIGVL  238 (408)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEE--T--T---EEEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHcCcEEEeCCEEEEEE--C--C---EEEECCCCEEEcCEEEECcCCC
Confidence            56778888889999999999999998  3  3   3445 67899999999999754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=93.27  E-value=0.27  Score=45.60  Aligned_cols=53  Identities=13%  Similarity=0.303  Sum_probs=41.0

Q ss_pred             HHHHHHHHH-HHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l-~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+ ++.|++|+++++|.+|+.++++  + .|.+   +|  ++++||.||+|+...
T Consensus       217 ~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~--~-~v~~~~~~g~~~~i~~D~vv~a~G~~  275 (468)
T 2qae_A          217 VTNALVGALAKNEKMKFMTSTKVVGGTNNGDS--V-SLEVEGKNGKRETVTCEALLVSVGRR  275 (468)
T ss_dssp             HHHHHHHHHHHHTCCEEECSCEEEEEEECSSS--E-EEEEECC---EEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCe--E-EEEEEcCCCceEEEECCEEEECCCcc
Confidence            567788888 8999999999999999976642  4 3543   45  679999999998643

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=93.27  E-value=0.088  Score=49.48  Aligned_cols=58  Identities=12%  Similarity=0.019  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~~  221 (355)
                      +.+.|.+.+++.|++|+++++|++|..+++++..+.|++    +|  ++++||.||.|+.....
T Consensus       168 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          168 LQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             HHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            556777888888999999999999997521022345665    44  47899999999998753

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=93.21  E-value=0.26  Score=45.71  Aligned_cols=52  Identities=13%  Similarity=0.167  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--C--Ce--EEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KE--TYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~--g~--~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++  .+ .|++  +  |+  +++||.||+|+..
T Consensus       212 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~~~~~~g~~~~i~~D~vv~a~G~  269 (464)
T 2eq6_A          212 TAALLRRALEKEGIRVRTKTKAVGYEKKKD--GL-HVRLEPAEGGEGEEVVVDKVLVAVGR  269 (464)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETT--EE-EEEEEETTCCSCEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHhcCCEEEcCCEEEEEEEeCC--EE-EEEEeecCCCceeEEEcCEEEECCCc
Confidence            567788888899999999999999997663  34 3554  5  66  8999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=93.21  E-value=0.21  Score=43.59  Aligned_cols=51  Identities=18%  Similarity=0.352  Sum_probs=38.8

Q ss_pred             HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccCh
Q 018455          166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI  218 (355)
Q Consensus       166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~  218 (355)
                      ..+.+.+.+.|++|+++++|.+|..++  +++.+|.+    +|+  +++||.||+|++.
T Consensus       194 ~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (319)
T 3cty_A          194 NAYVQEIKKRNIPYIMNAQVTEIVGDG--KKVTGVKYKDRTTGEEKLIETDGVFIYVGL  250 (319)
T ss_dssp             HHHHHHHHHTTCCEECSEEEEEEEESS--SSEEEEEEEETTTCCEEEECCSEEEECCCE
T ss_pred             HHHHHHHhcCCcEEEcCCeEEEEecCC--ceEEEEEEEEcCCCceEEEecCEEEEeeCC
Confidence            345666778899999999999998765  33545554    454  6899999999864

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=93.11  E-value=0.16  Score=47.26  Aligned_cols=54  Identities=20%  Similarity=0.265  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+.+++| +|..++  +++.+|.+  +++++.||.||+|+....
T Consensus       121 l~~~L~~~~~~~gv~i~~~~~v-~l~~~~--~~v~Gv~v~~~~g~~~a~~VVlAtGg~~  176 (472)
T 2e5v_A          121 IFNFLLKLAREEGIPIIEDRLV-EIRVKD--GKVTGFVTEKRGLVEDVDKLVLATGGYS  176 (472)
T ss_dssp             HHHHHHHHHHHTTCCEECCCEE-EEEEET--TEEEEEEETTTEEECCCSEEEECCCCCG
T ss_pred             HHHHHHHHHHhCCCEEEECcEE-EEEEeC--CEEEEEEEEeCCCeEEeeeEEECCCCCc
Confidence            6677888887789999999999 998876  55777765  345678999999998765

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=93.06  E-value=0.23  Score=43.42  Aligned_cols=53  Identities=13%  Similarity=0.150  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|.+++++++|++|..++++  .+.|.++++++.+|.||+|+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~v~~~~g~~~~d~vVlAtG~  121 (332)
T 3lzw_A           69 LINNLKEQMAKFDQTICLEQAVESVEKQADG--VFKLVTNEETHYSKTVIITAGN  121 (332)
T ss_dssp             HHHHHHHHHTTSCCEEECSCCEEEEEECTTS--CEEEEESSEEEEEEEEEECCTT
T ss_pred             HHHHHHHHHHHhCCcEEccCEEEEEEECCCC--cEEEEECCCEEEeCEEEECCCC
Confidence            5566777777789999999999999988652  3467776556999999999987

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=92.98  E-value=0.27  Score=45.75  Aligned_cols=54  Identities=19%  Similarity=0.279  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe------CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC------GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~------~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++ +.+ .|.+      ++++++||.||+|+...
T Consensus       222 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~  281 (474)
T 1zmd_A          222 ISKNFQRILQKQGFKFKLNTKVTGATKKSD-GKI-DVSIEAASGGKAEVITCDVLLVCIGRR  281 (474)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEECTT-SCE-EEEEEETTSCCCEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHCCCEEEeCceEEEEEEcCC-ceE-EEEEEecCCCCceEEEcCEEEECcCCC
Confidence            667788888999999999999999997663 223 3542      45789999999998743

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=92.97  E-value=0.12  Score=49.44  Aligned_cols=59  Identities=22%  Similarity=0.188  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC-eEEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-~~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+.|.+.+++.|++|+.+++|++|+.++++  + .|++   +| ++++||.||.|...+. +.+.+
T Consensus       150 l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~--v-~v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~l  213 (570)
T 3fmw_A          150 TEALLAEHAREAGAEIPRGHEVTRLRQDAEA--V-EVTVAGPSGPYPVRARYGVGCDGGRSTVRRLA  213 (570)
T ss_dssp             HHHHHHHHHHHHTEECCBSCEEEECCBCSSC--E-EEEEEETTEEEEEEESEEEECSCSSCHHHHHT
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCe--E-EEEEEeCCCcEEEEeCEEEEcCCCCchHHHHc
Confidence            5677888888889999999999999988753  5 3554   56 6899999999999875 34544

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=92.94  E-value=0.2  Score=48.13  Aligned_cols=51  Identities=14%  Similarity=0.172  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++     +|++ +|++++||.||+|+...
T Consensus       230 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-----~v~~~~g~~i~~D~Vi~a~G~~  281 (588)
T 3ics_A          230 MAAYVHEHMKNHDVELVFEDGVDALEENGA-----VVRLKSGSVIQTDMLILAIGVQ  281 (588)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEGGGT-----EEEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHcCCEEEECCeEEEEecCCC-----EEEECCCCEEEcCEEEEccCCC
Confidence            667788889999999999999999986542     3444 67899999999999753

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=92.77  E-value=0.4  Score=44.61  Aligned_cols=55  Identities=15%  Similarity=0.142  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC----C----eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K----ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~----g----~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|+.++++.++ .|.+.    |    +++++|.||+|+...
T Consensus       230 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~-~v~~~~~~~g~~~g~~~~~D~vi~a~G~~  292 (478)
T 3dk9_A          230 ISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEV-SMVTAVPGRLPVMTMIPDVDCLLWAIGRV  292 (478)
T ss_dssp             HHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEE-EEEECCTTSCCEEEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEE-EEEEccCCCCcccceEEEcCEEEEeeccc
Confidence            6677888888999999999999999987642134 45552    2    678999999999753

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=92.73  E-value=0.13  Score=48.82  Aligned_cols=56  Identities=20%  Similarity=0.222  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCC------eEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERC------CISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~------~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++ .|++|+.+++|++|..+++ +      +|.+|.+    +|+  ++.|+.||+|+....
T Consensus       140 l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~-g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~  208 (540)
T 1chu_A          140 VETTLVSKALNHPNIRVLERTNAVDLIVSDK-IGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  208 (540)
T ss_dssp             --CCCHHHHHHCTTEEEECSEEEEEEEEGGG-TTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHcCCCCEEEeCcEEEEEEEcCC-CCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            55667777777 6999999999999998433 3      6777754    455  789999999998765

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=92.69  E-value=0.35  Score=44.82  Aligned_cols=52  Identities=15%  Similarity=0.245  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CC--eEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g--~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|++|..+++  .+ .+.+  +|  ++++||.||+|+..
T Consensus       214 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~~~g~~~~~~~D~vv~a~G~  269 (464)
T 2a8x_A          214 VSKEIEKQFKKLGVTILTATKVESIADGGS--QV-TVTVTKDGVAQELKAEKVLQAIGF  269 (464)
T ss_dssp             HHHHHHHHHHHHTCEEECSCEEEEEEECSS--CE-EEEEESSSCEEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHcCCEEEeCcEEEEEEEcCC--eE-EEEEEcCCceEEEEcCEEEECCCC
Confidence            566778888899999999999999987653  24 3554  45  68999999999864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.68  E-value=0.23  Score=42.98  Aligned_cols=50  Identities=12%  Similarity=0.174  Sum_probs=38.3

Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChh
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~  219 (355)
                      +.+.+++.|++|+++++|.+|..++  +++.+|++   +|+  ++++|.||+|++..
T Consensus       189 ~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~  243 (315)
T 3r9u_A          189 VEKVKKNEKIELITSASVDEVYGDK--MGVAGVKVKLKDGSIRDLNVPGIFTFVGLN  243 (315)
T ss_dssp             HHHHHHCTTEEEECSCEEEEEEEET--TEEEEEEEECTTSCEEEECCSCEEECSCEE
T ss_pred             HHHHHhcCCeEEEeCcEEEEEEcCC--CcEEEEEEEcCCCCeEEeecCeEEEEEcCC
Confidence            3344567899999999999998776  34666654   564  78999999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=92.52  E-value=0.21  Score=46.63  Aligned_cols=53  Identities=21%  Similarity=0.265  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C----CeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G----KETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~----g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|.+|..+++  .+ .|++ +    |++++||.||+|+...
T Consensus       228 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~~~~~~~g~~~~~D~vv~a~G~~  285 (482)
T 1ojt_A          228 LVKVWQKQNEYRFDNIMVNTKTVAVEPKED--GV-YVTFEGANAPKEPQRYDAVLVAAGRA  285 (482)
T ss_dssp             HHHHHHHHHGGGEEEEECSCEEEEEEEETT--EE-EEEEESSSCCSSCEEESCEEECCCEE
T ss_pred             HHHHHHHHHHhcCCEEEECCEEEEEEEcCC--eE-EEEEeccCCCceEEEcCEEEECcCCC
Confidence            567788888899999999999999987653  23 4554 5    6789999999999753

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=92.52  E-value=0.25  Score=46.07  Aligned_cols=53  Identities=21%  Similarity=0.151  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC-----eEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-----ETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g-----~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|.+|+.+++ +.+ .|++ ++     .+++||.||+|+..
T Consensus       229 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~  287 (483)
T 3dgh_A          229 MAELVAASMEERGIPFLRKTVPLSVEKQDD-GKL-LVKYKNVETGEESEDVYDTVLWAIGR  287 (483)
T ss_dssp             HHHHHHHHHHHTTCCEEETEEEEEEEECTT-SCE-EEEEEETTTCCEEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CcE-EEEEecCCCCceeEEEcCEEEECccc
Confidence            567788888899999999999999998654 334 3544 32     27899999999875

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=92.41  E-value=0.24  Score=47.04  Aligned_cols=55  Identities=31%  Similarity=0.341  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHcCc--EEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~--~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|.  +|+++++|+++..+++++ .+.|++ +|+++.||.||+|+...
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~-~~~V~~~~G~~i~ad~lV~AtG~~  146 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDEN-LWEVTTDHGEVYRAKYVVNAVGLL  146 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTT-EEEEEETTSCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCC-EEEEEEcCCCEEEeCEEEECCccc
Confidence            44556666777787  899999999999886522 456777 57789999999999964

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=92.35  E-value=0.35  Score=45.21  Aligned_cols=52  Identities=21%  Similarity=0.291  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC----C--eEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~----g--~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|.+|+.+++  .+ .|.+.    |  ++++||.||+|+..
T Consensus       241 ~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~--~~-~v~~~~~~~g~~~~i~~D~Vi~a~G~  298 (491)
T 3urh_A          241 VAKQLQRMLTKQGIDFKLGAKVTGAVKSGD--GA-KVTFEPVKGGEATTLDAEVVLIATGR  298 (491)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETT--EE-EEEEEETTSCCCEEEEESEEEECCCC
T ss_pred             HHHHHHHHHHhCCCEEEECCeEEEEEEeCC--EE-EEEEEecCCCceEEEEcCEEEEeeCC
Confidence            667788888899999999999999998764  24 34431    4  58999999999975

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=92.28  E-value=0.33  Score=43.91  Aligned_cols=58  Identities=12%  Similarity=0.139  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIK  226 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~~  226 (355)
                      +.+.|.+.+  .|++|+++++|++|+.++++  + .|++ +|++++||.||.|...+.. .+.+.
T Consensus       101 l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~--v-~v~~~~g~~~~ad~vV~AdG~~S~vr~~~~  160 (397)
T 2vou_A          101 IYGGLYELF--GPERYHTSKCLVGLSQDSET--V-QMRFSDGTKAEANWVIGADGGASVVRKRLL  160 (397)
T ss_dssp             HHHHHHHHH--CSTTEETTCCEEEEEECSSC--E-EEEETTSCEEEESEEEECCCTTCHHHHHHH
T ss_pred             HHHHHHHhC--CCcEEEcCCEEEEEEecCCE--E-EEEECCCCEEECCEEEECCCcchhHHHHhc
Confidence            334444433  48999999999999988753  5 4666 6778999999999998753 45444

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.25  E-value=0.33  Score=44.87  Aligned_cols=53  Identities=17%  Similarity=0.212  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|.+|..+++  .+ .|.+    +++++++|.||+|+...
T Consensus       213 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~~~g~~~~~~~D~vv~a~G~~  269 (455)
T 1ebd_A          213 MAAIIKKRLKKKGVEVVTNALAKGAEERED--GV-TVTYEANGETKTIDADYVLVTVGRR  269 (455)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEEETT--EE-EEEEEETTEEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCC--eE-EEEEEeCCceeEEEcCEEEECcCCC
Confidence            567778888899999999999999987653  24 3543    24679999999998753

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=92.24  E-value=0.27  Score=46.78  Aligned_cols=55  Identities=24%  Similarity=0.119  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHcCc--EEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~--~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|.  +|+++++|+++..+++++ .+.|++ +|+++.||.||+|+...
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~-~w~V~~~~G~~i~ad~lV~AtG~~  158 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL-RWTVRTDRGDEVSARFLVVAAGPL  158 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTT-EEEEEETTCCEEEEEEEEECCCSE
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCC-EEEEEECCCCEEEeCEEEECcCCC
Confidence            55566666777776  899999999999876522 456777 57789999999999954

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=92.20  E-value=0.2  Score=45.56  Aligned_cols=57  Identities=19%  Similarity=0.196  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+.|.+.+.+  ++|+++++|++|+.++++  + .|++ +|++++||.||.|...+. ..+.+
T Consensus       129 l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~--v-~v~~~~g~~~~a~~vV~AdG~~S~vr~~l  187 (407)
T 3rp8_A          129 LQREMLDYWGR--DSVQFGKRVTRCEEDADG--V-TVWFTDGSSASGDLLIAADGSHSALRPWV  187 (407)
T ss_dssp             HHHHHHHHHCG--GGEEESCCEEEEEEETTE--E-EEEETTSCEEEESEEEECCCTTCSSHHHH
T ss_pred             HHHHHHHhCCc--CEEEECCEEEEEEecCCc--E-EEEEcCCCEEeeCEEEECCCcChHHHHHh
Confidence            55566666655  899999999999998753  5 4666 678999999999999874 34444

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=92.16  E-value=0.35  Score=42.97  Aligned_cols=53  Identities=15%  Similarity=0.246  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|.+++++++|++|..+++ +.+ .|.+ +|+++.+|.||+|+..
T Consensus        76 ~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~-~~~-~v~~~~g~~~~~~~li~AtG~  129 (360)
T 3ab1_A           76 LVESLWAQAERYNPDVVLNETVTKYTKLDD-GTF-ETRTNTGNVYRSRAVLIAAGL  129 (360)
T ss_dssp             HHHHHHHHHHTTCCEEECSCCEEEEEECTT-SCE-EEEETTSCEEEEEEEEECCTT
T ss_pred             HHHHHHHHHHHhCCEEEcCCEEEEEEECCC-ceE-EEEECCCcEEEeeEEEEccCC
Confidence            556677777778999999999999998764 223 5666 5678999999999976

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=92.09  E-value=0.32  Score=42.13  Aligned_cols=56  Identities=9%  Similarity=0.168  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++++++++|+.|..+.+.+..+.|.+ +|+++.+|.||+|+...
T Consensus        58 ~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  114 (310)
T 1fl2_A           58 LAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (310)
T ss_dssp             HHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence            556677777788999999999999986532011245666 56789999999999864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=92.04  E-value=0.19  Score=45.74  Aligned_cols=49  Identities=10%  Similarity=0.102  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++++++++|++|..  +     +|++ +|++++||.||++++..
T Consensus       220 ~~~~~~~~l~~~gV~~~~~~~v~~i~~--~-----~v~~~~g~~~~~D~vi~a~G~~  269 (409)
T 3h8l_A          220 SRKAVASIYNQLGIKLVHNFKIKEIRE--H-----EIVDEKGNTIPADITILLPPYT  269 (409)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEECS--S-----EEEETTSCEEECSEEEEECCEE
T ss_pred             HHHHHHHHHHHCCCEEEcCCceEEECC--C-----eEEECCCCEEeeeEEEECCCCC
Confidence            667788888999999999999999963  2     2444 78899999999998753

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=92.03  E-value=0.51  Score=41.31  Aligned_cols=53  Identities=17%  Similarity=0.118  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~  219 (355)
                      ..+.+.+.+++.|++|++++.|.+|..++   ++.+|.+    +|  +++++|.||+|++..
T Consensus       193 ~~~~l~~~l~~~gv~v~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~  251 (335)
T 2zbw_A          193 SVKELMKAHEEGRLEVLTPYELRRVEGDE---RVRWAVVFHNQTQEELALEVDAVLILAGYI  251 (335)
T ss_dssp             HHHHHHHHHHTTSSEEETTEEEEEEEESS---SEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHHHHHhccccCCeEEecCCcceeEccCC---CeeEEEEEECCCCceEEEecCEEEEeecCC
Confidence            44567777777899999999999998742   2445554    56  579999999999754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=91.92  E-value=0.33  Score=42.49  Aligned_cols=52  Identities=17%  Similarity=0.293  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|+++++++ |.+|..++++  + .|.++|+++++|.||+|+...
T Consensus        72 ~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~--~-~v~~~~~~~~~~~vv~A~G~~  123 (333)
T 1vdc_A           72 LTDKFRKQSERFGTTIFTET-VTKVDFSSKP--F-KLFTDSKAILADAVILAIGAV  123 (333)
T ss_dssp             HHHHHHHHHHHTTCEEECCC-CCEEECSSSS--E-EEECSSEEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHCCCEEEEeE-EEEEEEcCCE--E-EEEECCcEEEcCEEEECCCCC
Confidence            55667777788899999997 9999887642  3 466688899999999999875

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=91.87  E-value=0.41  Score=44.55  Aligned_cols=52  Identities=19%  Similarity=0.319  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEe--cCCCCeEEEEEe------CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIY--DEERCCISDVVC------GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~--~~~~~~v~~v~~------~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|++|..  ++  +.+ .|.+      ++++++||.||+|+..
T Consensus       226 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~~-~v~~~~~~~g~~~~~~~D~vv~a~G~  285 (478)
T 1v59_A          226 VAKATQKFLKKQGLDFKLSTKVISAKRNDDK--NVV-EIVVEDTKTNKQENLEAEVLLVAVGR  285 (478)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTT--TEE-EEEEEETTTTEEEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEecCC--CeE-EEEEEEcCCCCceEEECCEEEECCCC
Confidence            667788888899999999999999987  33  223 4544      2467999999999874

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=91.85  E-value=0.3  Score=47.13  Aligned_cols=54  Identities=15%  Similarity=0.034  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++. |++| ++..|+.|..++  ++|.+|.+ +|+++.||.||+|+....
T Consensus       119 l~~~L~~~l~~~~GV~I-~~~~V~~L~~d~--g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A          119 YSLYMRRIVEHEPNIDL-LQDTVIGVSANS--GKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             HHHHHHHHHHTCTTEEE-EECCEEEEEEET--TEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             HHHHHHHHHHhCCCCEE-EeeEEEEEEecC--CEEEEEEECCCcEEEeCEEEECcCCCC
Confidence            566777778774 8999 466999998876  45777877 678999999999998764

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.72  E-value=0.37  Score=44.74  Aligned_cols=53  Identities=17%  Similarity=0.290  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|.+|..++++  + .|.+    +|  +++++|.||+|+...
T Consensus       220 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~-~v~~~~~~~g~~~~~~~D~vv~a~G~~  278 (470)
T 1dxl_A          220 IRKQFQRSLEKQGMKFKLKTKVVGVDTSGDG--V-KLTVEPSAGGEQTIIEADVVLVSAGRT  278 (470)
T ss_dssp             HHHHHHHHHHHSSCCEECSEEEEEEECSSSS--E-EEEEEESSSCCCEEEEESEEECCCCEE
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEEcCCe--E-EEEEEecCCCcceEEECCEEEECCCCC
Confidence            6677888889999999999999999876532  4 3443    34  689999999998754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=91.65  E-value=0.4  Score=41.98  Aligned_cols=53  Identities=17%  Similarity=0.313  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|.+++++++|++|..+++  .+ .|.+ +|+++.+|.||+|+...
T Consensus        67 ~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~--~~-~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           67 LVKGLVEQVAPFNPVYSLGERAETLEREGD--LF-KVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             HHHHHHHHHGGGCCEEEESCCEEEEEEETT--EE-EEEETTSCEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEECCC--EE-EEEECCCCEEEeCEEEECCCCC
Confidence            456677777778999999999999998763  23 5666 46689999999999863

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=91.22  E-value=0.51  Score=42.19  Aligned_cols=60  Identities=12%  Similarity=0.056  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +.+.|.+.+++.|++++++++|+++..++  +++.++..  +++  +++||.||-|...+.. .+.+
T Consensus       104 ~~~~L~~~a~~~G~~~~~~~~v~~~~~~~--~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~vr~~~  168 (397)
T 3oz2_A          104 FDKHLAALAAKAGADVWVKSPALGVIKEN--GKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWA  168 (397)
T ss_dssp             HHHHHHHHHHHHTCEEESSCCEEEEEEET--TEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCcEEeeeeeeeeeeecc--ceeeeeeecccccceEEEEeEEEeCCccccHHHHHc
Confidence            55667777888899999999999999887  44655644  443  6899999999988753 4433

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=91.10  E-value=0.46  Score=46.15  Aligned_cols=57  Identities=18%  Similarity=0.243  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHc-Cc-EEEcCceeeEEEecCCC-CeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTR-GC-EFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~-G~-~i~l~~~V~~I~~~~~~-~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +...+.+.+++. |+ +|+.+++|++|..++++ |+|.+|..    +|+  ++.|+.||+|+....
T Consensus       153 ~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~  218 (643)
T 1jnr_A          153 YKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT  218 (643)
T ss_dssp             HHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence            556677777777 99 99999999999987630 16888763    344  689999999998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=90.94  E-value=0.3  Score=45.74  Aligned_cols=49  Identities=16%  Similarity=0.281  Sum_probs=39.3

Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+++.|++|++++.|.+|..++   ++.+|.+ +|++++||.||+|+...
T Consensus       263 le~~l~~~GV~v~~~~~v~~i~~~~---~v~~v~~~~g~~i~aD~Vv~a~G~~  312 (493)
T 1y56_A          263 VIQELERWGIDYVHIPNVKRVEGNE---KVERVIDMNNHEYKVDALIFADGRR  312 (493)
T ss_dssp             HHHHHHHHTCEEEECSSEEEEECSS---SCCEEEETTCCEEECSEEEECCCEE
T ss_pred             HHHHHHhCCcEEEeCCeeEEEecCC---ceEEEEeCCCeEEEeCEEEECCCcC
Confidence            4467788999999999999998643   2445666 57899999999999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=90.76  E-value=0.58  Score=44.35  Aligned_cols=52  Identities=19%  Similarity=0.103  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|.++++++.|.+++..++  .+ .|.+ +++++.+|.|++|+.-
T Consensus       265 i~~~l~~~l~~~gi~~~~~~~v~~~~~~~~--~~-~v~~~~~~~~~~D~vLvAvGR  317 (542)
T 4b1b_A          265 CAVKVKLYMEEQGVMFKNGILPKKLTKMDD--KI-LVEFSDKTSELYDTVLYAIGR  317 (542)
T ss_dssp             HHHHHHHHHHHTTCEEEETCCEEEEEEETT--EE-EEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHHHHHhhcceeecceEEEEEEecCC--eE-EEEEcCCCeEEEEEEEEcccc
Confidence            667788889999999999999999998874  35 4655 6778899999999964

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=90.74  E-value=0.41  Score=45.46  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHcCc--EEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~--~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.+.+.+++.|.  +|+++++|+++..+++++ .+.|++ +|++++||.||+|+....
T Consensus        89 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~-~w~V~~~~G~~~~ad~lV~AtG~~s  147 (545)
T 3uox_A           89 MLRYVNRAADAMDVRKHYRFNTRVTAARYVENDR-LWEVTLDNEEVVTCRFLISATGPLS  147 (545)
T ss_dssp             HHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGT-EEEEEETTTEEEEEEEEEECCCSCB
T ss_pred             HHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCC-EEEEEECCCCEEEeCEEEECcCCCC
Confidence            44556566666676  899999999999876422 456777 678999999999999643

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=90.54  E-value=0.38  Score=44.33  Aligned_cols=53  Identities=17%  Similarity=-0.100  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C---Ce---EEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE---TYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g~---~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.+..|+++++|++|..+++  . +.|++ +   |+   ++.||.||+|+...
T Consensus       117 l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~--~-~~V~~~~~~~G~~~~~~~~d~VVvAtG~~  176 (447)
T 2gv8_A          117 IQEYQRIYAQPLLPFIKLATDVLDIEKKDG--S-WVVTYKGTKAGSPISKDIFDAVSICNGHY  176 (447)
T ss_dssp             HHHHHHHHHGGGGGGEECSEEEEEEEEETT--E-EEEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred             HHHHHHHHHHHhhCeEEeCCEEEEEEeCCC--e-EEEEEeecCCCCeeEEEEeCEEEECCCCC
Confidence            445555556666778999999999988763  2 34554 3   65   79999999999863

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=90.38  E-value=0.88  Score=39.97  Aligned_cols=56  Identities=13%  Similarity=0.268  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecC--CCC--eEEEEEe---------------CCeEEec--------------
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDE--ERC--CISDVVC---------------GKETYSA--------------  209 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~--~~~--~v~~v~~---------------~g~~~~a--------------  209 (355)
                      +...|.+.+.+. |++|+.+++|.+|..++  ++|  +|.+|.+               ++.++.|              
T Consensus       148 ~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~  227 (326)
T 2gjc_A          148 FISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQK  227 (326)
T ss_dssp             HHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTT
T ss_pred             HHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccccc
Confidence            456677777664 89999999999999874  213  6778764               2357999              


Q ss_pred             -CEEEEccChh
Q 018455          210 -GAVVLAVGIS  219 (355)
Q Consensus       210 -d~VV~a~p~~  219 (355)
                       |.||.|+...
T Consensus       228 ~~~VV~ATG~~  238 (326)
T 2gjc_A          228 HGVILSTTGHD  238 (326)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEECcCCC
Confidence             9999999865

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=90.35  E-value=0.47  Score=42.86  Aligned_cols=44  Identities=14%  Similarity=0.088  Sum_probs=35.6

Q ss_pred             HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +.+++.|.+++++++|++|..++  +   .|++ +|+++.+|++|+||..
T Consensus        70 ~~~~~~~i~~~~~~~V~~id~~~--~---~v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           70 DWYEKNNIKVITSEFATSIDPNN--K---LVTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             HHHHHTTCEEECSCCEEEEETTT--T---EEEETTSCEEECSEEEECCCE
T ss_pred             HHHHHCCCEEEeCCEEEEEECCC--C---EEEECCCCEEECCEEEEecCC
Confidence            44567899999999999998765  2   3555 6789999999999875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=90.35  E-value=0.47  Score=44.04  Aligned_cols=55  Identities=13%  Similarity=0.105  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHcCcE--EEcCceeeEEEecCCCCeEEEEEe-C---C--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~--i~l~~~V~~I~~~~~~~~v~~v~~-~---g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|.+  |+++++|++|..+++++ .+.|++ +   |  +++.||.||+|+...
T Consensus       103 l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~-~~~V~~~~~~~g~~~~~~~d~VVvAtG~~  165 (464)
T 2xve_A          103 LWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQ-TFTVTVQDHTTDTIYSEEFDYVVCCTGHF  165 (464)
T ss_dssp             HHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTT-EEEEEEEETTTTEEEEEEESEEEECCCSS
T ss_pred             HHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCC-cEEEEEEEcCCCceEEEEcCEEEECCCCC
Confidence            445566666667877  99999999999876422 235654 2   4  578999999999953

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=90.29  E-value=0.6  Score=40.33  Aligned_cols=50  Identities=10%  Similarity=0.242  Sum_probs=37.3

Q ss_pred             HHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccCh
Q 018455          167 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGI  218 (355)
Q Consensus       167 ~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~  218 (355)
                      .+.+.+++ .|++|+++++|++|..++  +++.+|.+    +|  .++.+|.||+|++.
T Consensus       184 ~~~~~l~~~~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  240 (310)
T 1fl2_A          184 VLQDKLRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHNIELAGIFVQIGL  240 (310)
T ss_dssp             HHHHHHHTCTTEEEESSEEEEEEEESS--SSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             HHHHHHhhCCCeEEecCCceEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence            35566666 699999999999998765  34555654    24  36899999999864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=90.24  E-value=0.23  Score=48.76  Aligned_cols=50  Identities=12%  Similarity=0.040  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCeEEecCEEEEccChh
Q 018455          165 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       165 ~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~~~~ad~VV~a~p~~  219 (355)
                      ...+.+.+++.|++|+++++|++|..++    + .+..    ++++++||.||+|+...
T Consensus       570 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~----~-~v~~~~~~~~~~i~aD~VV~A~G~~  623 (690)
T 3k30_A          570 VNRIQRRLIENGVARVTDHAVVAVGAGG----V-TVRDTYASIERELECDAVVMVTARL  623 (690)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEETTE----E-EEEETTTCCEEEEECSEEEEESCEE
T ss_pred             HHHHHHHHHHCCCEEEcCcEEEEEECCe----E-EEEEccCCeEEEEECCEEEECCCCC
Confidence            4567788889999999999999998432    2 2332    34689999999999764

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=90.13  E-value=0.46  Score=45.08  Aligned_cols=57  Identities=14%  Similarity=0.226  Sum_probs=42.8

Q ss_pred             HHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-C---Ce--EE---ecCEEEEccChhhHHHhh
Q 018455          167 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TY---SAGAVVLAVGISTLQELI  225 (355)
Q Consensus       167 ~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g~--~~---~ad~VV~a~p~~~~~~l~  225 (355)
                      .+.+.+.+ .|++|++++.|++|..++  +++++|.+ +   |+  ++   .++.||+|+.+....+|+
T Consensus       200 ~~l~~~~~~~~~~i~~~~~V~~i~~~~--~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL  266 (546)
T 1kdg_A          200 TYLQTALARPNFTFKTNVMVSNVVRNG--SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRIL  266 (546)
T ss_dssp             THHHHHHTCTTEEEECSCCEEEEEEET--TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHH
Confidence            34455544 589999999999999976  56888887 3   53  33   789999999987665554

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=90.08  E-value=0.85  Score=42.52  Aligned_cols=54  Identities=19%  Similarity=0.196  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C---Ce--EEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g~--~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|.+|...++ +.+ .|++ +   |+  +++||.||+|+...
T Consensus       227 ~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~-~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~  286 (488)
T 3dgz_A          227 MSSLVTEHMESHGTQFLKGCVPSHIKKLPT-NQL-QVTWEDHASGKEDTGTFDTVLWAIGRV  286 (488)
T ss_dssp             HHHHHHHHHHHTTCEEEETEEEEEEEECTT-SCE-EEEEEETTTTEEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcE-EEEEEeCCCCeeEEEECCEEEEcccCC
Confidence            667788888999999999999999987544 333 3443 2   55  47899999998753

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=90.03  E-value=0.33  Score=43.95  Aligned_cols=42  Identities=17%  Similarity=0.155  Sum_probs=34.8

Q ss_pred             CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          176 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       176 G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +++|+++++|++|+.++++  + .|++ +|++++||.||.|.....
T Consensus       140 ~~~i~~~~~v~~i~~~~~~--v-~v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          140 NDTVIWDRKLVMLEPGKKK--W-TLTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             TTSEEESCCEEEEEECSSS--E-EEEETTSCCEEESEEEECSCTTC
T ss_pred             CCEEEECCEEEEEEECCCE--E-EEEECCCcEEecCEEEECCCcch
Confidence            3689999999999988753  5 4666 677899999999999865

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=90.01  E-value=0.98  Score=42.17  Aligned_cols=52  Identities=21%  Similarity=0.141  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++. ++|+++++|++|+.++++  +. |.+   +|  ++++||.||+|+...
T Consensus       217 ~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~--v~-v~~~~~~G~~~~i~~D~Vi~a~G~~  273 (492)
T 3ic9_A          217 MKRYAEKTFNEE-FYFDAKARVISTIEKEDA--VE-VIYFDKSGQKTTESFQYVLAATGRK  273 (492)
T ss_dssp             HHHHHHHHHHTT-SEEETTCEEEEEEECSSS--EE-EEEECTTCCEEEEEESEEEECSCCE
T ss_pred             HHHHHHHHHhhC-cEEEECCEEEEEEEcCCE--EE-EEEEeCCCceEEEECCEEEEeeCCc
Confidence            566777777777 999999999999987643  53 544   56  689999999998753

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=90.00  E-value=0.54  Score=44.35  Aligned_cols=56  Identities=7%  Similarity=0.196  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++++.+++|++|..+.+.+..+.|.+ +|+++.+|.||+|+...
T Consensus       269 l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~  325 (521)
T 1hyu_A          269 LAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK  325 (521)
T ss_dssp             HHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCC
Confidence            556677777888999999999999986421011235766 57789999999999864

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=89.93  E-value=0.84  Score=40.39  Aligned_cols=57  Identities=16%  Similarity=0.258  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHH-cCcEEEcCceeeEEEecCC-----------------CCeEEEEEe-------CC--------eEEecC
Q 018455          164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEE-----------------RCCISDVVC-------GK--------ETYSAG  210 (355)
Q Consensus       164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~-----------------~~~v~~v~~-------~g--------~~~~ad  210 (355)
                      +.+.|.+.+.+ .|++|+.++.|.+|..+++                 +.+|.+|.+       +|        .+++|+
T Consensus       162 ~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak  241 (344)
T 3jsk_A          162 FTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAP  241 (344)
T ss_dssp             HHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECS
T ss_pred             HHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEcC
Confidence            44667777776 5899999999999998762                 126777765       12        479999


Q ss_pred             EEEEccChhh
Q 018455          211 AVVLAVGIST  220 (355)
Q Consensus       211 ~VV~a~p~~~  220 (355)
                      .||.|+....
T Consensus       242 ~VV~ATG~~s  251 (344)
T 3jsk_A          242 VIISTTGHDG  251 (344)
T ss_dssp             EEEECCCSSS
T ss_pred             EEEECCCCCc
Confidence            9999998763

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=89.88  E-value=0.58  Score=43.12  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=43.4

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      ...-+.+.+.+.+++. ++++++++|.+|..++   ++..+..+|++++||.||+|+...
T Consensus       188 ~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~---~v~~v~~~g~~i~~D~Vv~a~G~~  243 (449)
T 3kd9_A          188 FDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE---RVEKVVTDAGEYKAELVILATGIK  243 (449)
T ss_dssp             SCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS---SCCEEEETTEEEECSEEEECSCEE
T ss_pred             cCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC---cEEEEEeCCCEEECCEEEEeeCCc
Confidence            3333566777778888 9999999999998654   244566788999999999999754

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=89.48  E-value=0.67  Score=43.90  Aligned_cols=55  Identities=16%  Similarity=0.018  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHcC--cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G--~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+...+++.+  .+|+++++|+++..+++++ .+.|++ +|++++||.||+|+...
T Consensus        96 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~-~w~V~~~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A           96 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATN-TWTVDTNHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTT-EEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCC-eEEEEECCCCEEEeCEEEECcCCC
Confidence            3344444455544  6899999999999876422 446777 57789999999999864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=89.44  E-value=0.6  Score=40.64  Aligned_cols=49  Identities=14%  Similarity=0.262  Sum_probs=37.2

Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C-----CeEEecCEEEEccChh
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-----KETYSAGAVVLAVGIS  219 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-----g~~~~ad~VV~a~p~~  219 (355)
                      ..+.+++.|++++++++|.+|..+++   +.+|++ +     ++++++|.||+|++..
T Consensus       195 ~~~~l~~~gv~~~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~~~~D~vv~a~G~~  249 (332)
T 3lzw_A          195 SVENLHASKVNVLTPFVPAELIGEDK---IEQLVLEEVKGDRKEILEIDDLIVNYGFV  249 (332)
T ss_dssp             HHHHHHHSSCEEETTEEEEEEECSSS---CCEEEEEETTSCCEEEEECSEEEECCCEE
T ss_pred             HHHHHhcCCeEEEeCceeeEEecCCc---eEEEEEEecCCCceEEEECCEEEEeeccC
Confidence            44557889999999999999987653   334554 2     3578999999998753

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=89.37  E-value=0.56  Score=45.65  Aligned_cols=57  Identities=16%  Similarity=0.205  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHc--CcEEEcCceeeEEEecCCC-CeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTR--GCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~--G~~i~l~~~V~~I~~~~~~-~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +...|.+.+++.  |++|+.++.|.+|..++++ |+|.+|..    +|+  ++.|+.||+|+....
T Consensus       168 i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g  233 (662)
T 3gyx_A          168 YKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAV  233 (662)
T ss_dssp             HHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCccc
Confidence            556788888777  9999999999999987630 26888854    343  689999999998654

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=89.32  E-value=0.5  Score=44.87  Aligned_cols=51  Identities=22%  Similarity=0.350  Sum_probs=39.9

Q ss_pred             HcCcEEEcCceeeEEEecCCCCeEEEEEe-C---Ce--EEecC-EEEEccChhhHHHhh
Q 018455          174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAG-AVVLAVGISTLQELI  225 (355)
Q Consensus       174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g~--~~~ad-~VV~a~p~~~~~~l~  225 (355)
                      +.|++|++++.|++|..+++ +++++|.+ +   |+  ++.|+ .||+|+.+....+|+
T Consensus       221 ~~~~~i~~~~~V~~i~~~~~-~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL  278 (546)
T 2jbv_A          221 QENFTLLTGLRARQLVFDAD-RRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLL  278 (546)
T ss_dssp             CTTEEEECSCEEEEEEECTT-SBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             CCCcEEEeCCEEEEEEECCC-CeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhh
Confidence            46899999999999999763 45778876 3   53  68898 899999986555554

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=89.31  E-value=0.49  Score=43.68  Aligned_cols=55  Identities=11%  Similarity=-0.054  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEE--EEEe-CCe----EEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS--DVVC-GKE----TYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~--~v~~-~g~----~~~ad~VV~a~p~  218 (355)
                      +.+.+...+++.|.+|+++++|++|..++++++.+  .|++ +|+    ++.||.||+|+..
T Consensus       129 ~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          129 FNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             HHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             HHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence            44445555566788999999999999863212333  3444 443    8999999999985

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=89.30  E-value=0.86  Score=41.32  Aligned_cols=58  Identities=16%  Similarity=0.134  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHH-cC-cEEEcCceeeEEEecCCCCeEEEEEe-C---C--eEEecCEEEEccChhhH-HHhh
Q 018455          164 IFEPWMDSMRT-RG-CEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       164 l~~~l~~~l~~-~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g--~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      +.+.|.+.+.+ .| ++|+++++|++|+. +++  + .|++ +   |  ++++||.||.|...... .+.+
T Consensus       109 l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~--v-~v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l  175 (410)
T 3c96_A          109 LQMILLAAVRERLGQQAVRTGLGVERIEE-RDG--R-VLIGARDGHGKPQALGADVLVGADGIHSAVRAHL  175 (410)
T ss_dssp             HHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT--E-EEEEEEETTSCEEEEEESEEEECCCTTCHHHHHH
T ss_pred             HHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc--c-EEEEecCCCCCceEEecCEEEECCCccchhHHHh
Confidence            55667777765 46 58999999999998 543  5 3543 3   6  57999999999998753 4444

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=89.26  E-value=0.66  Score=43.51  Aligned_cols=55  Identities=13%  Similarity=0.100  Sum_probs=39.8

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC----eEEecCEEEEccC
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK----ETYSAGAVVLAVG  217 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g----~~~~ad~VV~a~p  217 (355)
                      +...+.+.+.+.+++.|++|++|++|++|+.+   +.+..+.. +|    +++.||.||.|+.
T Consensus       270 ~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~---~~~~~~~~~dg~~~~~~i~ad~viwa~G  329 (502)
T 4g6h_A          270 FEKKLSSYAQSHLENTSIKVHLRTAVAKVEEK---QLLAKTKHEDGKITEETIPYGTLIWATG  329 (502)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEETTEEEEEECSS---EEEEEEECTTSCEEEEEEECSEEEECCC
T ss_pred             CCHHHHHHHHHHHHhcceeeecCceEEEEeCC---ceEEEEEecCcccceeeeccCEEEEccC
Confidence            44446777888899999999999999998632   21222232 33    4689999999885

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=88.93  E-value=1.2  Score=38.45  Aligned_cols=51  Identities=18%  Similarity=0.193  Sum_probs=37.0

Q ss_pred             HHHHHHH-HcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 018455          167 PWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       167 ~l~~~l~-~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~  219 (355)
                      .+.+.+. +.|++|+++++|.+|..++  +++.+|.+    +|+  +++||.||+|++..
T Consensus       183 ~~~~~l~~~~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  240 (311)
T 2q0l_A          183 ITLEHAKNNDKIEFLTPYVVEEIKGDA--SGVSSLSIKNTATNEKRELVVPGFFIFVGYD  240 (311)
T ss_dssp             HHHHHHHTCTTEEEETTEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             HHHHHHhhCCCeEEEeCCEEEEEECCC--CcEeEEEEEecCCCceEEEecCEEEEEecCc
Confidence            3455554 4799999999999998764  23444543    454  78999999999753

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=88.92  E-value=0.62  Score=44.99  Aligned_cols=52  Identities=12%  Similarity=0.137  Sum_probs=40.2

Q ss_pred             cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhHHHhhh
Q 018455          175 RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTLQELIK  226 (355)
Q Consensus       175 ~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~~~~l~~  226 (355)
                      .|++|++++.|++|..+++++++++|++    +|+  +++||.||+|+......+++.
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~  330 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV  330 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHH
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHH
Confidence            4789999999999998764346888875    243  688999999999876655543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=88.48  E-value=0.84  Score=39.44  Aligned_cols=52  Identities=15%  Similarity=0.223  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|.++++ ++|.+|..+++  .+ .|.+ +|+++.+|.||+|+...
T Consensus        72 ~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~--~~-~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           72 MIKVFNKHIEKYEVPVLL-DIVEKIENRGD--EF-VVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             HHHHHHHHHHTTTCCEEE-SCEEEEEEC----CE-EEEESSSCEEEEEEEEECCCCE
T ss_pred             HHHHHHHHHHHcCCEEEE-EEEEEEEecCC--EE-EEEECCCCEEEcCEEEECcCCC
Confidence            556677777788999999 99999998763  23 4666 45899999999998765

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=88.13  E-value=0.7  Score=41.34  Aligned_cols=48  Identities=19%  Similarity=0.241  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|.  .+     +|++ +|+ +++|.||+|+...
T Consensus       185 ~~~~l~~~l~~~gV~i~~~~~v~~i~--~~-----~v~~~~g~-i~~D~vi~a~G~~  233 (367)
T 1xhc_A          185 LSNMIKDMLEETGVKFFLNSELLEAN--EE-----GVLTNSGF-IEGKVKICAIGIV  233 (367)
T ss_dssp             HHHHHHHHHHHTTEEEECSCCEEEEC--SS-----EEEETTEE-EECSCEEEECCEE
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEE--ee-----EEEECCCE-EEcCEEEECcCCC
Confidence            56777888899999999999999997  21     3555 566 9999999998743

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=87.79  E-value=1.2  Score=38.31  Aligned_cols=52  Identities=19%  Similarity=0.331  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|+++++ ++|.+|..+++  .+ .|.+ +|+++++|.||+|+...
T Consensus        61 ~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~--~~-~v~~~~g~~~~~~~vv~AtG~~  113 (311)
T 2q0l_A           61 FMQPWQEQCFRFGLKHEM-TAVQRVSKKDS--HF-VILAEDGKTFEAKSVIIATGGS  113 (311)
T ss_dssp             HHHHHHHHHHTTSCEEEC-SCEEEEEEETT--EE-EEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHcCCEEEE-EEEEEEEEcCC--EE-EEEEcCCCEEECCEEEECCCCC
Confidence            556666777778999998 89999998763  23 4655 67789999999999853

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=87.67  E-value=1.4  Score=38.43  Aligned_cols=49  Identities=12%  Similarity=0.180  Sum_probs=36.0

Q ss_pred             HHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChh
Q 018455          171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       171 ~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~  219 (355)
                      .+++.|++|+++++|.+|..+++++++.+|.+    +|  ++++||.||+++...
T Consensus       204 ~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  258 (333)
T 1vdc_A          204 ALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHE  258 (333)
T ss_dssp             HHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             HHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCc
Confidence            34668999999999999987653114544544    34  578999999998753

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=87.56  E-value=0.26  Score=44.64  Aligned_cols=45  Identities=20%  Similarity=0.119  Sum_probs=35.7

Q ss_pred             HHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +++.|++|++++.|..++.++++  . .|.+ +|++++||.||+++|..
T Consensus       212 l~~~gi~v~~~~~v~~v~~~~~~--~-~v~~~~g~~i~~D~vi~~~g~~  257 (401)
T 3vrd_B          212 TENALIEWHPGPDAAVVKTDTEA--M-TVETSFGETFKAAVINLIPPQR  257 (401)
T ss_dssp             STTCSEEEECTTTTCEEEEETTT--T-EEEETTSCEEECSEEEECCCEE
T ss_pred             HHhcCcEEEeCceEEEEEecccc--e-EEEcCCCcEEEeeEEEEecCcC
Confidence            34678999999999999987643  3 4655 68899999999987643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=87.48  E-value=1.4  Score=38.04  Aligned_cols=50  Identities=18%  Similarity=0.405  Sum_probs=36.4

Q ss_pred             HHHHHH-HcCcEEEcCceeeEEEecCCCCeEEEEEe-C---Ce--EEecCEEEEccChhh
Q 018455          168 WMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       168 l~~~l~-~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g~--~~~ad~VV~a~p~~~  220 (355)
                      +.+.+. +.|++++++++|.+|..++  + +.+|.+ +   |+  ++++|.||++++...
T Consensus       195 ~~~~~~~~~gv~~~~~~~v~~i~~~~--~-~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p  251 (323)
T 3f8d_A          195 YVETVKKKPNVEFVLNSVVKEIKGDK--V-VKQVVVENLKTGEIKELNVNGVFIEIGFDP  251 (323)
T ss_dssp             HHHHHHTCTTEEEECSEEEEEEEESS--S-EEEEEEEETTTCCEEEEECSEEEECCCEEC
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEeccC--c-eeEEEEEECCCCceEEEEcCEEEEEECCCC
Confidence            344444 4599999999999998763  2 445654 3   65  789999999997644

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=87.37  E-value=0.65  Score=42.67  Aligned_cols=48  Identities=10%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|+++++|+++..    .   .|++ +|++++||.||+|+..
T Consensus       190 ~~~~~~~~l~~~gV~i~~~~~v~~~~~----~---~v~~~~g~~~~~D~vl~a~G~  238 (437)
T 4eqs_A          190 MNQPILDELDKREIPYRLNEEINAING----N---EITFKSGKVEHYDMIIEGVGT  238 (437)
T ss_dssp             GGHHHHHHHHHTTCCEEESCCEEEEET----T---EEEETTSCEEECSEEEECCCE
T ss_pred             hHHHHHHHhhccceEEEeccEEEEecC----C---eeeecCCeEEeeeeEEEEece
Confidence            567788889999999999999998862    1   2444 7889999999999874

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=87.19  E-value=1.1  Score=38.81  Aligned_cols=52  Identities=15%  Similarity=0.180  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|+++++ ++|.+|..+++  .+ .|.++++++.+|.||+|+...
T Consensus        74 ~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~--~~-~v~~~~~~~~~~~li~AtG~~  125 (319)
T 3cty_A           74 LAKLFADHAANYAKIREG-VEVRSIKKTQG--GF-DIETNDDTYHAKYVIITTGTT  125 (319)
T ss_dssp             HHHHHHHHHHTTSEEEET-CCEEEEEEETT--EE-EEEESSSEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHcCCEEEE-eeEEEEEEeCC--EE-EEEECCCEEEeCEEEECCCCC
Confidence            455666777778999988 78999998763  23 466677889999999999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=87.18  E-value=1  Score=41.28  Aligned_cols=49  Identities=10%  Similarity=0.008  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---C-----CeEEecCEEEEccC
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-----KETYSAGAVVLAVG  217 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~-----g~~~~ad~VV~a~p  217 (355)
                      ..+.+.+.+++.|++++++++|++|+.+    .+. +..   +     ++++++|.||++++
T Consensus       210 ~~~~~~~~l~~~gI~~~~~~~v~~v~~~----~v~-~~~~~~~g~~~~~~~i~~D~vv~~~g  266 (437)
T 3sx6_A          210 SKGILTKGLKEEGIEAYTNCKVTKVEDN----KMY-VTQVDEKGETIKEMVLPVKFGMMIPA  266 (437)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEETT----EEE-EEEECTTSCEEEEEEEECSEEEEECC
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEECC----eEE-EEecccCCccccceEEEEeEEEEcCC
Confidence            4566778889999999999999999732    132 322   2     46789999999865

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=87.18  E-value=1.4  Score=38.34  Aligned_cols=52  Identities=17%  Similarity=0.273  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|+++++++ |.+|..+++  .+ .+.+    ++.++.+|.||+|+...
T Consensus        86 ~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~--~~-~v~~~~~~~~~~~~~d~vvlAtG~~  141 (338)
T 3itj_A           86 LMDRMREQSTKFGTEIITET-VSKVDLSSK--PF-KLWTEFNEDAEPVTTDAIILATGAS  141 (338)
T ss_dssp             HHHHHHHHHHHTTCEEECSC-EEEEECSSS--SE-EEEETTCSSSCCEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHcCCEEEEeE-EEEEEEcCC--EE-EEEEEecCCCcEEEeCEEEECcCCC
Confidence            55677777888899999999 999998764  24 4555    46789999999998763

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=86.69  E-value=0.84  Score=42.17  Aligned_cols=51  Identities=22%  Similarity=0.290  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++|+++++|++|.. +  + + .+.. +|  +++++|.||+|+...
T Consensus       214 ~~~~l~~~l~~~gv~i~~~~~v~~i~~-~--~-v-~v~~~~G~~~~i~~D~vv~a~G~~  267 (458)
T 1lvl_A          214 LTAPVAESLKKLGIALHLGHSVEGYEN-G--C-L-LANDGKGGQLRLEADRVLVAVGRR  267 (458)
T ss_dssp             HHHHHHHHHHHHTCEEETTCEEEEEET-T--E-E-EEECSSSCCCEECCSCEEECCCEE
T ss_pred             HHHHHHHHHHHCCCEEEECCEEEEEEe-C--C-E-EEEECCCceEEEECCEEEECcCCC
Confidence            566777888889999999999999986 3  3 4 3444 35  589999999999753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=86.26  E-value=2.9  Score=38.40  Aligned_cols=42  Identities=21%  Similarity=0.162  Sum_probs=32.8

Q ss_pred             cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 018455          175 RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       175 ~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~  219 (355)
                      .|++|+++++|++|..+++  .+ .|++    +|+  +++||.||+|+...
T Consensus       329 ~~v~i~~~~~v~~v~~~~~--~~-~v~~~~~~~g~~~~~~~D~Vv~AtG~~  376 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQ--GI-ELALRDAGSGELSVETYDAVILATGYE  376 (463)
T ss_dssp             CCSEEETTEEEEEEEEETT--EE-EEEEEETTTCCEEEEEESEEEECCCEE
T ss_pred             CCeEEEeCCEEEEEEecCC--EE-EEEEEEcCCCCeEEEECCEEEEeeCCC
Confidence            5899999999999998763  23 4554    454  48999999999864

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=86.20  E-value=1.5  Score=39.28  Aligned_cols=50  Identities=10%  Similarity=-0.003  Sum_probs=38.8

Q ss_pred             HcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455          174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI  225 (355)
Q Consensus       174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~  225 (355)
                      ..+.+|+++++|++++..++ +.| .|++ ||++++||.||-|-..+.. .+.+
T Consensus       121 ~~~~~v~~~~~v~~~~~~~~-~~v-~v~~~dG~~~~adlvVgADG~~S~vR~~l  172 (412)
T 4hb9_A          121 GLANTIQWNKTFVRYEHIEN-GGI-KIFFADGSHENVDVLVGADGSNSKVRKQY  172 (412)
T ss_dssp             TCTTTEECSCCEEEEEECTT-SCE-EEEETTSCEEEESEEEECCCTTCHHHHHH
T ss_pred             hccceEEEEEEEEeeeEcCC-CeE-EEEECCCCEEEeeEEEECCCCCcchHHHh
Confidence            34678999999999998766 345 4666 7889999999999998754 4443

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=86.05  E-value=2  Score=40.66  Aligned_cols=56  Identities=13%  Similarity=0.199  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C---C--eEEecCEEEEccChhh-HHHhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGIST-LQELI  225 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g--~~~~ad~VV~a~p~~~-~~~l~  225 (355)
                      +.+.|.+.+++.   |+++++|++|+.++++  |+ |++ +   |  ++++||.||.|...+. ..+.+
T Consensus       140 l~~~L~~~a~~~---v~~~~~v~~~~~~~~~--v~-v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~l  202 (549)
T 2r0c_A          140 LAPLLAEAVGER---LRTRSRLDSFEQRDDH--VR-ATITDLRTGATRAVHARYLVACDGASSPTRKAL  202 (549)
T ss_dssp             HHHHHHHHHGGG---EECSEEEEEEEECSSC--EE-EEEEETTTCCEEEEEEEEEEECCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHh---cccCcEEEEEEEeCCE--EE-EEEEECCCCCEEEEEeCEEEECCCCCcHHHHHc
Confidence            445666666655   9999999999998753  53 443 3   5  4799999999999875 45555

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=85.99  E-value=2.2  Score=37.00  Aligned_cols=49  Identities=14%  Similarity=0.112  Sum_probs=35.6

Q ss_pred             HHHHHHH-HcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccCh
Q 018455          167 PWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI  218 (355)
Q Consensus       167 ~l~~~l~-~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~  218 (355)
                      .+.+.+. +.|++|+++++|++|..++   ++.+|.+    +|+  +++||.||+|++.
T Consensus       192 ~~~~~l~~~~gv~i~~~~~v~~i~~~~---~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  247 (325)
T 2q7v_A          192 VAQARAFANPKMKFIWDTAVEEIQGAD---SVSGVKLRNLKTGEVSELATDGVFIFIGH  247 (325)
T ss_dssp             HHHHHHHTCTTEEEECSEEEEEEEESS---SEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             HHHHHHHhcCCceEecCCceEEEccCC---cEEEEEEEECCCCcEEEEEcCEEEEccCC
Confidence            3444554 4699999999999998642   2445554    454  7899999999864

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=85.65  E-value=1.3  Score=40.49  Aligned_cols=50  Identities=8%  Similarity=-0.049  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C--CeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--KETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g~~~~ad~VV~a~p~  218 (355)
                      ..+.+.+.++++|+++++|+.|++|+  +  +++ .+.. +  +++++||.||++++.
T Consensus       202 ~~~~l~~~l~~~GV~~~~~~~v~~v~--~--~~~-~~~~~~g~~~~i~~d~vi~~~G~  254 (430)
T 3hyw_A          202 SKRLVEDLFAERNIDWIANVAVKAIE--P--DKV-IYEDLNGNTHEVPAKFTMFMPSF  254 (430)
T ss_dssp             HHHHHHHHHHHTTCEEECSCEEEEEC--S--SEE-EEECTTSCEEEEECSEEEEECEE
T ss_pred             HHHHHHHHHHhCCeEEEeCceEEEEe--C--Cce-EEEeeCCCceEeecceEEEeccC
Confidence            44557777889999999999999986  3  224 2333 3  358999999998864

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=85.38  E-value=2.1  Score=41.46  Aligned_cols=62  Identities=26%  Similarity=0.282  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHcCc--EEEcCceeeEEEecCC--CCeEEEEEe-------CC--eEEecCEEEEccChhh-HHHhhh
Q 018455          164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEE--RCCISDVVC-------GK--ETYSAGAVVLAVGIST-LQELIK  226 (355)
Q Consensus       164 l~~~l~~~l~~~G~--~i~l~~~V~~I~~~~~--~~~v~~v~~-------~g--~~~~ad~VV~a~p~~~-~~~l~~  226 (355)
                      +.+.|.+.+++.|+  +|+++++|++|+++++  +..| .|++       +|  ++++||.||.|...+. ..+.+.
T Consensus       143 l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v-~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg  218 (639)
T 2dkh_A          143 VHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPV-TVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIG  218 (639)
T ss_dssp             HHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCE-EEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCE-EEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhC
Confidence            66778888888887  9999999999998763  1124 3443       35  5799999999999875 455553

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=85.06  E-value=1.4  Score=37.58  Aligned_cols=60  Identities=12%  Similarity=0.134  Sum_probs=42.4

Q ss_pred             ceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      .+.+...+... +.+.+.+.+++.|++|+. ++|.+|..+   +   .|.+ +|+++++|.||++++..
T Consensus       165 ~v~~v~~~~~~-~~~~~~~~l~~~gv~i~~-~~v~~i~~~---~---~v~~~~g~~~~~D~vi~a~G~~  225 (297)
T 3fbs_A          165 ETTFFTNGIVE-PDADQHALLAARGVRVET-TRIREIAGH---A---DVVLADGRSIALAGLFTQPKLR  225 (297)
T ss_dssp             EEEEECTTTCC-CCHHHHHHHHHTTCEEEC-SCEEEEETT---E---EEEETTSCEEEESEEEECCEEE
T ss_pred             cEEEEECCCCC-CCHHHHHHHHHCCcEEEc-ceeeeeecC---C---eEEeCCCCEEEEEEEEEccCcc
Confidence            44444433323 446677888899999985 999998742   1   3555 77899999999998653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=84.93  E-value=2.5  Score=36.42  Aligned_cols=52  Identities=13%  Similarity=0.218  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|.++++++ |..|..+++  .+ .|..+++++.+|.||+|+...
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~--~~-~v~~~~~~~~~~~lv~AtG~~  115 (320)
T 1trb_A           64 LMERMHEHATKFETEIIFDH-INKVDLQNR--PF-RLNGDNGEYTCDALIIATGAS  115 (320)
T ss_dssp             HHHHHHHHHHHTTCEEECCC-EEEEECSSS--SE-EEEESSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHCCCEEEEee-eeEEEecCC--EE-EEEeCCCEEEcCEEEECCCCC
Confidence            45566667778899999997 999987663  24 354477889999999998763

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=84.20  E-value=1.5  Score=41.80  Aligned_cols=53  Identities=15%  Similarity=0.228  Sum_probs=40.0

Q ss_pred             HHcCcEEEcCceeeEEEecCCCCeEEEEEe--C-Ce--EEec-CEEEEccChhhHHHhh
Q 018455          173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-KE--TYSA-GAVVLAVGISTLQELI  225 (355)
Q Consensus       173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~-g~--~~~a-d~VV~a~p~~~~~~l~  225 (355)
                      .+.+.+|++++.|++|..+++++++++|..  . |+  ++.| +.||+|+.+-...+|+
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL  275 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLL  275 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHH
Confidence            345799999999999999843367889876  3 54  5677 4699999887665554

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=84.18  E-value=1.6  Score=41.77  Aligned_cols=54  Identities=17%  Similarity=0.207  Sum_probs=41.0

Q ss_pred             HHcCcEEEcCceeeEEEecCC--CCeEEEEEe---CCe--EEecC-EEEEccChhhHHHhhh
Q 018455          173 RTRGCEFLDGRRVTDFIYDEE--RCCISDVVC---GKE--TYSAG-AVVLAVGISTLQELIK  226 (355)
Q Consensus       173 ~~~G~~i~l~~~V~~I~~~~~--~~~v~~v~~---~g~--~~~ad-~VV~a~p~~~~~~l~~  226 (355)
                      .+.+.+|++++.|++|..+++  +++++||..   +|+  ++.|+ .||+++.+-...+|+.
T Consensus       238 ~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~  299 (583)
T 3qvp_A          238 QRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILE  299 (583)
T ss_dssp             TCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred             cCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHH
Confidence            456899999999999999831  267889975   353  57786 5999998877766653

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=84.03  E-value=1.4  Score=42.16  Aligned_cols=54  Identities=19%  Similarity=0.205  Sum_probs=40.6

Q ss_pred             HHcCcEEEcCceeeEEEecCCC--CeEEEEEe---CCe--EEec-CEEEEccChhhHHHhhh
Q 018455          173 RTRGCEFLDGRRVTDFIYDEER--CCISDVVC---GKE--TYSA-GAVVLAVGISTLQELIK  226 (355)
Q Consensus       173 ~~~G~~i~l~~~V~~I~~~~~~--~~v~~v~~---~g~--~~~a-d~VV~a~p~~~~~~l~~  226 (355)
                      ++.+.+|++++.|++|..++++  +++++|..   +|+  ++.| +.||+|+..-...+|+-
T Consensus       242 ~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~  303 (587)
T 1gpe_A          242 QRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILE  303 (587)
T ss_dssp             TCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred             cCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHH
Confidence            3568999999999999987531  36888864   464  5778 88999999866655543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=83.95  E-value=1.7  Score=38.47  Aligned_cols=53  Identities=11%  Similarity=0.133  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEe-cCEEEEccChh
Q 018455          164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYS-AGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~-ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.| ++|+++++|.+|..+++  .+ .|.+ +|+++. +|.||+|+...
T Consensus       216 ~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~--~~-~v~~~~g~~~~~~d~vi~a~G~~  271 (369)
T 3d1c_A          216 TRQRLGNVIKQGARIEMNVHYTVKDIDFNNG--QY-HISFDSGQSVHTPHEPILATGFD  271 (369)
T ss_dssp             HHHHHHHHHHTTCCEEEECSCCEEEEEEETT--EE-EEEESSSCCEEESSCCEECCCBC
T ss_pred             HHHHHHHHHhhCCcEEEecCcEEEEEEecCC--ce-EEEecCCeEeccCCceEEeeccC
Confidence            3456777777786 99999999999986553  23 4655 676665 69999998753

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=83.51  E-value=0.54  Score=37.46  Aligned_cols=44  Identities=16%  Similarity=0.080  Sum_probs=29.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhc-ccCCCc-ee--eeeeEEecCCCc
Q 018455          303 ANELMPLKDDQVVAKAVSYLSKCI-KDFSTA-TV--MDHKIRRFPKSL  346 (355)
Q Consensus       303 ~~~~~~~~~ee~~~~~~~~l~~~~-p~~~~~-~~--~~~~v~~~~~a~  346 (355)
                      +..+..++++++++.++++|+++| |.+... ..  ..+.|.+.|++.
T Consensus        48 A~~~~~l~~~e~~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~   95 (181)
T 2e1m_C           48 AARWDSFDDAERYGYALENLQSVHGRRIEVFYTGAGQTQSWLRDPYAC   95 (181)
T ss_dssp             HHHHTTSCTTTTHHHHHHHHHHHHCGGGGGTEEEEEEEEESSSCTTTS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhCCCcHhhccCcceecccCCCCCCC
Confidence            445667899999999999999999 554211 12  334455555544

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=82.40  E-value=3.3  Score=35.81  Aligned_cols=53  Identities=21%  Similarity=0.152  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEec--CCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~--~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|++++. ++|.+|..+  ++ + .+.|.+ +|+++.+|.||+|+...
T Consensus        67 ~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~-~-~~~v~~~~g~~~~~~~vv~AtG~~  122 (325)
T 2q7v_A           67 LAQRMHQQAEKFGAKVEM-DEVQGVQHDATSH-P-YPFTVRGYNGEYRAKAVILATGAD  122 (325)
T ss_dssp             HHHHHHHHHHHTTCEEEE-CCEEEEEECTTSS-S-CCEEEEESSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHcCCEEEe-eeEEEEEeccCCC-c-eEEEEECCCCEEEeCEEEECcCCC
Confidence            556677777788999987 689999887  42 1 123444 77889999999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=82.15  E-value=3  Score=36.33  Aligned_cols=51  Identities=20%  Similarity=0.236  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEE-Ee-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDV-VC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v-~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++.|+++++++ |.+|.. ++  .+ .| .+ +|+++.+|.||+|+...
T Consensus        73 ~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~--~~-~v~~~~~g~~~~~d~lviAtG~~  125 (335)
T 2a87_A           73 LMDEMREQALRFGADLRMED-VESVSL-HG--PL-KSVVTADGQTHRARAVILAMGAA  125 (335)
T ss_dssp             HHHHHHHHHHHTTCEEECCC-EEEEEC-SS--SS-EEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHcCCEEEEee-EEEEEe-CC--cE-EEEEeCCCCEEEeCEEEECCCCC
Confidence            45566667777899999998 999987 32  23 45 55 56789999999998753

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=81.96  E-value=2.7  Score=35.65  Aligned_cols=52  Identities=23%  Similarity=0.231  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+.+.+.+++. +.++. +++|++|..++++   +.|.+ +|+++.+|.||+|+...
T Consensus        58 ~~~~~~~~~~~~~~v~~~-~~~v~~i~~~~~~---~~v~~~~g~~~~~d~vviAtG~~  111 (297)
T 3fbs_A           58 IIAEARRQIERYPTIHWV-EGRVTDAKGSFGE---FIVEIDGGRRETAGRLILAMGVT  111 (297)
T ss_dssp             HHHHHHHHHTTCTTEEEE-ESCEEEEEEETTE---EEEEETTSCEEEEEEEEECCCCE
T ss_pred             HHHHHHHHHHhcCCeEEE-EeEEEEEEEcCCe---EEEEECCCCEEEcCEEEECCCCC
Confidence            455666667665 45654 5699999987642   35766 57789999999999864

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=81.36  E-value=1.5  Score=41.72  Aligned_cols=55  Identities=20%  Similarity=0.136  Sum_probs=40.2

Q ss_pred             HHHcCcEEEcCceeeEEEec---CCCCeEEEEEe---CC-e--EEec-CEEEEccChhhHHHhhh
Q 018455          172 MRTRGCEFLDGRRVTDFIYD---EERCCISDVVC---GK-E--TYSA-GAVVLAVGISTLQELIK  226 (355)
Q Consensus       172 l~~~G~~i~l~~~V~~I~~~---~~~~~v~~v~~---~g-~--~~~a-d~VV~a~p~~~~~~l~~  226 (355)
                      +.+.+.+|++++.|++|..+   ++.++++||..   +| +  ++.| +.||++..+-...+|+.
T Consensus       218 ~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~  282 (566)
T 3fim_B          218 QSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQ  282 (566)
T ss_dssp             TTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHH
T ss_pred             ccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHH
Confidence            34568999999999999997   22146888876   24 3  5678 57999998876666653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=81.26  E-value=2.8  Score=40.79  Aligned_cols=49  Identities=16%  Similarity=0.279  Sum_probs=37.3

Q ss_pred             HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCC--eEEecCEEEEccChh
Q 018455          166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS  219 (355)
Q Consensus       166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g--~~~~ad~VV~a~p~~  219 (355)
                      ..+.+.+++.|++|+++++|++|.  ++ + + .+..+|  ++++||.||+|+...
T Consensus       577 ~~~~~~l~~~GV~v~~~~~v~~i~--~~-~-v-~~~~~G~~~~i~~D~Vi~a~G~~  627 (671)
T 1ps9_A          577 WIHRTTLLSRGVKMIPGVSYQKID--DD-G-L-HVVINGETQVLAVDNVVICAGQE  627 (671)
T ss_dssp             HHHHHHHHHTTCEEECSCEEEEEE--TT-E-E-EEEETTEEEEECCSEEEECCCEE
T ss_pred             HHHHHHHHhcCCEEEeCcEEEEEe--CC-e-E-EEecCCeEEEEeCCEEEECCCcc
Confidence            345677888999999999999997  32 2 3 233566  579999999999764

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=81.01  E-value=2.5  Score=38.60  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=35.3

Q ss_pred             HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455          170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  219 (355)
Q Consensus       170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~  219 (355)
                      +.+++.|++++++++|+.|..++  .   .|.+ +|+++.+|.||+|+...
T Consensus        68 ~~~~~~gv~~~~~~~v~~i~~~~--~---~v~~~~g~~~~~d~lviAtG~~  113 (431)
T 1q1r_A           68 DAYAAQNIQLLGGTQVTAINRDR--Q---QVILSDGRALDYDRLVLATGGR  113 (431)
T ss_dssp             HHHHHTTEEEECSCCEEEEETTT--T---EEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHhCCCEEEeCCEEEEEECCC--C---EEEECCCCEEECCEEEEcCCCC
Confidence            34567899999999999998754  2   3555 57789999999999753

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=80.70  E-value=2.5  Score=37.67  Aligned_cols=43  Identities=23%  Similarity=0.182  Sum_probs=34.0

Q ss_pred             HHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 018455          171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI  218 (355)
Q Consensus       171 ~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~  218 (355)
                      .+++.|++++++++|+.|..++  ..   |..+|+++.+|++|+||..
T Consensus        69 ~~~~~~v~~~~g~~v~~id~~~--~~---V~~~g~~~~~d~lViATGs  111 (367)
T 1xhc_A           69 WYRKRGIEIRLAEEAKLIDRGR--KV---VITEKGEVPYDTLVLATGA  111 (367)
T ss_dssp             HHHHHTEEEECSCCEEEEETTT--TE---EEESSCEEECSEEEECCCE
T ss_pred             HHHhCCcEEEECCEEEEEECCC--CE---EEECCcEEECCEEEECCCC
Confidence            3456799999999999998654  22   3367788999999999875

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=80.65  E-value=4.8  Score=37.72  Aligned_cols=54  Identities=20%  Similarity=0.180  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCC--CeEEEEEe---CC-e--EEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVC---GK-E--TYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~--~~v~~v~~---~g-~--~~~ad~VV~a~p~  218 (355)
                      +.+.+.+.+++.|++|++++.|++|...+++  +.+ .|+.   +| +  ++++|.||+|+..
T Consensus       252 ~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~-~v~~~~~~g~~~~~~~~D~vi~a~G~  313 (519)
T 3qfa_A          252 MANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRL-RVVAQSTNSEEIIEGEYNTVMLAIGR  313 (519)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEE-EEEEEESSSSCEEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceE-EEEEEECCCcEEEEEECCEEEEecCC
Confidence            6677778888999999999999888764321  223 2332   44 2  5689999999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=80.37  E-value=3  Score=39.22  Aligned_cols=50  Identities=10%  Similarity=0.259  Sum_probs=37.3

Q ss_pred             HHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccCh
Q 018455          167 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI  218 (355)
Q Consensus       167 ~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~  218 (355)
                      .+.+.+++ .|++|++++.|++|..++  +++.+|.+    +|+  ++.+|.||++++.
T Consensus       395 ~l~~~l~~~~gV~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  451 (521)
T 1hyu_A          395 VLQDKVRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHSVALAGIFVQIGL  451 (521)
T ss_dssp             HHHHHHTTCTTEEEECSEEEEEEEECS--SSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             HHHHHHhcCCCcEEEeCCEEEEEEcCC--CcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence            35566666 589999999999998765  34656654    243  6899999999874

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=80.30  E-value=2.6  Score=39.83  Aligned_cols=55  Identities=15%  Similarity=0.187  Sum_probs=40.9

Q ss_pred             HHHcCcEEEcCceeeEEEecCC-CCeEEEEEe---CCe--EE---ecCEEEEccChhhHHHhhh
Q 018455          172 MRTRGCEFLDGRRVTDFIYDEE-RCCISDVVC---GKE--TY---SAGAVVLAVGISTLQELIK  226 (355)
Q Consensus       172 l~~~G~~i~l~~~V~~I~~~~~-~~~v~~v~~---~g~--~~---~ad~VV~a~p~~~~~~l~~  226 (355)
                      +++.|.+|++++.|++|..+++ ++++++|.+   +|+  ++   .++.||+|+.+....+|+.
T Consensus       204 ~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~  267 (536)
T 1ju2_A          204 GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLL  267 (536)
T ss_dssp             SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHH
T ss_pred             hcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHH
Confidence            4567899999999999999763 136888876   354  34   4689999999876666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	8e-04

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 19/210 (9%), Positives = 57/210 (27%)

Query: 4   FWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFS 63
                + + +  +   I   T   +   + +      F   +        +  +      
Sbjct: 78  VDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMG 137

Query: 64  RLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVG 123
                     L  +++  + D +       D  T  E++ +FG        +   +    
Sbjct: 138 IFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWT 197

Query: 124 LFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR 183
                +Q +  +   IL +     +              ++ + +       G  ++   
Sbjct: 198 NDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDT 257

Query: 184 RVTDFIYDEERCCISDVVCGKETYSAGAVV 213
            + + +Y ++      V     T+ A  V+
Sbjct: 258 PIDEVLYKKDTGKFEGVKTKLGTFKAPLVI 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.33
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	99.14
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.13
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.87
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.67
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.63
d2ivda2	108	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.6
d1seza2	112	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.36
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.89
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.87
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.82
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.76
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.76
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.65
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.61
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.6
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.6
d2v5za2	112	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	97.58
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.55
d2iida2	113	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.54
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.34
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.3
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.28
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.27
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.24
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.14
d2dw4a3	109	Lysine-specific histone demethylase 1, LSD1 {Human	97.12
d1b5qa2	112	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.07
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.04
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.99
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	96.7
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	96.63
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.53
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.49
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.43
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.38
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	96.37
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.23
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.14
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.35
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	94.71
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	94.57
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	94.37
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	94.23
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.07
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	94.01
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.44
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	92.0
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.36
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	90.69
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	89.75
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	88.19
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	88.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	87.85
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	87.46
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.35
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.61
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	84.53
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	83.68
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.66
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	83.25
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	80.91
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	80.54
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	80.44

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=1.7e-11  Score=103.69  Aligned_cols=122  Identities=15%  Similarity=0.153  Sum_probs=90.6

Q ss_pred             hcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH--hcCCCcceEEecCCcchHHHHHHH
Q 018455           92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGTLREKIFEPWM  169 (355)
Q Consensus        92 ~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~--~~~~~~~~~~~~gg~~~~l~~~l~  169 (355)
                      .++..++.+++++.+..+...+ ++...+......+..+.++...+..+.....  .......+.+++||+++ ++++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~l~  243 (297)
T d2bcgg1         166 DLDKNTMDEVYYKFGLGNSTKE-FIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGE-LPQGFA  243 (297)
T ss_dssp             CTTTSBHHHHHHHTTCCHHHHH-HHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSSCSEEEETTCTTH-HHHHHH
T ss_pred             cccchhhhhhhhhhccCHHHHH-HHHHHHhhhccccccchhhhhhhhhhhhhhhcccccccCcceeccCcHHH-HHHHHH
Confidence            4567899999999988887654 5555444444444555666555444433211  11123356789999999 889999


Q ss_pred             HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEc
Q 018455          170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA  215 (355)
Q Consensus       170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a  215 (355)
                      +.++++|++|++|++|++|..+++++++.+|+.+|++++||+||++
T Consensus       244 ~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         244 RLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD  289 (297)
T ss_dssp             HHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC
T ss_pred             HHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC
Confidence            9999999999999999999988665778788889999999999986

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=9.8e-10  Score=99.55  Aligned_cols=193  Identities=11%  Similarity=0.130  Sum_probs=139.1

Q ss_pred             cCCchHHHHHHHhCCCCCCCccc---ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHHhc
Q 018455            6 YPFRNIFSLVDELGIKPFTGWMK---SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVID   82 (355)
Q Consensus         6 ~~y~~~~~l~~elGl~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   82 (355)
                      -+.-.+.+++-+-|+..+..+..   ..+| .+|+.      ..     .|.+-...++.+.+++.+|.++.+++.....
T Consensus       232 ~a~g~lv~~Li~S~v~rYlEFk~v~~~~v~-~~g~~------~~-----VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~  299 (491)
T d1vg0a1         232 YSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTV------EQ-----VPCSRADVFNSKQLTMVEKRMLMKFLTFCVE  299 (491)
T ss_dssp             ESSSHHHHHHHHHTGGGGCCEEECCEEEEE-SSSSE------EE-----CCCSHHHHHHCSSSCHHHHHHHHHHHHHHHT
T ss_pred             ecccHHHHHHHHcChhhheeEEEeceEEEe-cCCeE------EE-----CCCCHHHHhcCCCCCHHHHHHHHHHHHHHhh
Confidence            34455777888888886666552   3333 45642      21     2444444678889999999999888877776


Q ss_pred             cCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH--hcCCCcceEEecCCc
Q 018455           83 FDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGTL  160 (355)
Q Consensus        83 ~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~--~~~~~~~~~~~~gg~  160 (355)
                      .+..+..+...++.|+.+|++++++++..++.+...+ . ++  .-++..+..++..++.++.  +.-+.+.+.|+..|+
T Consensus       300 ~~~~~~~~~~~~~~~~~e~l~~~~l~~~~~~~i~~ai-a-l~--~~~~~~~~~~l~ri~~yl~Slg~yG~spflyp~YG~  375 (491)
T d1vg0a1         300 YEEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSI-A-MT--SETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQ  375 (491)
T ss_dssp             GGGCHHHHHTTTTSBHHHHHTTSSSCHHHHHHHHHHT-T-C----CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCT
T ss_pred             ccCCccccccccCCcHHHHHHHcCCChHHHHHHHhhe-e-cc--CCCCccHHHHHHHHHHHHHHHHhhCCCCeEeecCCc
Confidence            5544556777889999999999999999876443222 1 22  2234566777777777642  223456688999999


Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEc
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLA  215 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a  215 (355)
                      ++ |++++.+..+-.|+...||++|.+|..+++++++.+|.. +|+++.|+.||+.
T Consensus       376 gE-ipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~  430 (491)
T d1vg0a1         376 GE-LPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE  430 (491)
T ss_dssp             TH-HHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred             ch-HHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEEC
Confidence            99 999999999889999999999999999754466777776 6899999999874

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.9e-10  Score=100.79  Aligned_cols=134  Identities=19%  Similarity=0.094  Sum_probs=98.3

Q ss_pred             hhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH-----HhcCCCcceEEecCCcchHH
Q 018455           90 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-----LAHQKNFDLVWCRGTLREKI  164 (355)
Q Consensus        90 ~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~-----~~~~~~~~~~~~~gg~~~~l  164 (355)
                      ...++..++.+++.+....+.. ..++..+........+...++...+..+....     ...........+.++++. +
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  212 (383)
T d2v5za1         135 AEEWDNMTMKELLDKLCWTESA-KQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQ-V  212 (383)
T ss_dssp             HHHHHTSBHHHHHHHHCSSHHH-HHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHH-H
T ss_pred             hhhhhhhHHHHHHHHhccchHH-HHHHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccccCcceeeeccchhH-H
Confidence            3456789999999998766664 55777888888888999999888776554310     011111223456788776 5


Q ss_pred             HHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhccccc
Q 018455          165 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILC  231 (355)
Q Consensus       165 ~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~~~l~  231 (355)
                      .+.++   ++.|++|++|++|++|..++++  | .|++ +|++++||+||+|+|+..+.++...++++
T Consensus       213 ~~~l~---~~~g~~i~~~~~v~~I~~~~~~--v-~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~  274 (383)
T d2v5za1         213 SERIM---DLLGDRVKLERPVIYIDQTREN--V-LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLP  274 (383)
T ss_dssp             HHHHH---HHHGGGEEESCCEEEEECSSSS--E-EEEETTSCEEEESEEEECSCGGGGGGSEEESCCC
T ss_pred             HHHHH---HHcCCeEEecCcceEEEecCCe--E-EEEECCCCEEECCEEEECCCHHHHhhCccCCCCC
Confidence            45453   5678999999999999988753  6 4666 78899999999999999998887776553

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.87  E-value=4.1e-08  Score=84.46  Aligned_cols=129  Identities=17%  Similarity=0.100  Sum_probs=87.7

Q ss_pred             cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH---------------hcC---------
Q 018455           93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL---------------AHQ---------  148 (355)
Q Consensus        93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~---------------~~~---------  148 (355)
                      ....++.+++++. ...........++....++.+++..+.......+.....               ...         
T Consensus       130 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (347)
T d2ivda1         130 GVDESLAAFGRRH-LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAP  208 (347)
T ss_dssp             TCCCBHHHHHHHH-TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSC
T ss_pred             cccccHHHHHHhh-hhcchhccccchhhhhhhccccchhhHHHHHHHHHHhhhhccchhhhhhhccchhccccccccccc
Confidence            4567889999887 556666777888888888888887776655444332110               000         


Q ss_pred             -CCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChhhHHHh
Q 018455          149 -KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQEL  224 (355)
Q Consensus       149 -~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~~~~~l  224 (355)
                       .......++||++. +.+.+.+   +.|++|++|++|++|+.++++  +..+.. +|  ++++||.||+|+|++.+.+|
T Consensus       209 ~~~~~~~~~~~g~~~-~~~~l~~---~~g~~i~~~~~V~~I~~~~~~--~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~L  282 (347)
T d2ivda1         209 KLSGALSTFDGGLQV-LIDALAA---SLGDAAHVGARVEGLAREDGG--WRLIIEEHGRRAELSVAQVVLAAPAHATAKL  282 (347)
T ss_dssp             CCCCCEEEETTCTHH-HHHHHHH---HHGGGEESSEEEEEEECC--C--CEEEEEETTEEEEEECSEEEECSCHHHHHHH
T ss_pred             cccCcccccCCchHH-HHHHHHH---HhhcccccCCEEEEEEEeCCe--EEEEEEcCCeEEEEECCEEEECCCHHHHHHh
Confidence             01123456788887 5566654   448999999999999988753  432222 44  47899999999999999999


Q ss_pred             hhcc
Q 018455          225 IKNS  228 (355)
Q Consensus       225 ~~~~  228 (355)
                      +.+.
T Consensus       283 l~~~  286 (347)
T d2ivda1         283 LRPL  286 (347)
T ss_dssp             HTTT
T ss_pred             ccCC
Confidence            8754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.63  E-value=2.4e-07  Score=80.70  Aligned_cols=128  Identities=15%  Similarity=0.108  Sum_probs=76.8

Q ss_pred             hhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHH
Q 018455           90 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWM  169 (355)
Q Consensus        90 ~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~  169 (355)
                      ....+..+..+++.+..........++......   ......+..........  ..  .......+.+|++. +.+.++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~-l~~~l~  245 (370)
T d2iida1         174 LNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNE---DSGYYVSFIESLKHDDI--FA--YEKRFDEIVDGMDK-LPTAMY  245 (370)
T ss_dssp             HHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTC---GGGTTSBHHHHHHHHHH--HT--TCCCEEEETTCTTH-HHHHHH
T ss_pred             hhhccchhHHHHHHHhccccHHHHHHhhccccc---cchhhhHHHhhhhhhhh--hc--cccccccchhhHHH-HHHHHH
Confidence            345677888888887543333222222222111   11222233222221111  11  12334567899887 656554


Q ss_pred             HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-----CCeEEecCEEEEccChhhHHHhhhccccc
Q 018455          170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----GKETYSAGAVVLAVGISTLQELIKNSILC  231 (355)
Q Consensus       170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-----~g~~~~ad~VV~a~p~~~~~~l~~~~~l~  231 (355)
                         ++.|++|++|++|++|..++++  +. |..     ++++++||.||+|+|+..++++...|+++
T Consensus       246 ---~~~g~~i~~~~~V~~I~~~~~~--v~-v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~  306 (370)
T d2iida1         246 ---RDIQDKVHFNAQVIKIQQNDQK--VT-VVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLL  306 (370)
T ss_dssp             ---HHTGGGEESSCEEEEEEECSSC--EE-EEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCC
T ss_pred             ---HhcCCccccCceEEEEEEeCCe--EE-EEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCC
Confidence               5668999999999999998853  43 332     24689999999999999988876666553

>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.60  E-value=1.6e-07  Score=67.48  Aligned_cols=102  Identities=13%  Similarity=0.079  Sum_probs=68.7

Q ss_pred             cccEEEEEEEEccCCCC-CCCCcceeccC--CCccceeeEcccccccccCCCceEEEEEeeC--CCCCCCCCHHHHHHHH
Q 018455          244 SIDVVSVKLWFDKKVTV-PNVSNACSGFG--DSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKA  318 (355)
Q Consensus       244 ~~~~~~v~l~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~~~~~~~ee~~~~~  318 (355)
                      |.++..|+++|+++-.. +...+.+....  ..+..++|+ |..+|...+++..++.+.+..  ..++..++++++++.+
T Consensus         2 Ya~vavV~l~~~~~~~~~~~GfG~LVP~~e~~~~lg~~f~-S~~fp~r~p~~~~llrv~~Gg~~~~~~~~~~d~~l~~~a   80 (108)
T d2ivda2           2 YAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHA-STTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALA   80 (108)
T ss_dssp             BCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEH-HHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHH
T ss_pred             CCCEEEEEEEEcHHHCCCCCceEEEccCCCCCeEEEEEEE-ccccccccCCCCEEEEEEeCCCCCcccccCCHHHHHHHH
Confidence            67899999999875431 11233332211  123335676 566676653445566555543  2355678999999999


Q ss_pred             HHHHhhhcccCCCceeeeeeEEecCCCccc
Q 018455          319 VSYLSKCIKDFSTATVMDHKIRRFPKSLTH  348 (355)
Q Consensus       319 ~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~  348 (355)
                      +++|+++++. . .+++..+++||+.++|+
T Consensus        81 ~~dL~~~lgi-~-~~P~~~~v~rw~~aiPQ  108 (108)
T d2ivda2          81 REELKALAGV-T-ARPSFTRVFRWPLGIPQ  108 (108)
T ss_dssp             HHHHHHHHCC-C-SCCSEEEEEEESSCCBC
T ss_pred             HHHHHHHhCC-C-CCCcEEEeeECCCCcCc
Confidence            9999999964 3 46788999999999986

>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.36  E-value=6.5e-07  Score=64.53  Aligned_cols=102  Identities=10%  Similarity=0.041  Sum_probs=68.0

Q ss_pred             cccEEEEEEEEccCCC-CC-CCCcceeccCC-----CccceeeEcccccccccCCCceEEEEEeeC--CCCCCCCCHHHH
Q 018455          244 SIDVVSVKLWFDKKVT-VP-NVSNACSGFGD-----SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQV  314 (355)
Q Consensus       244 ~~~~~~v~l~~~~~~~-~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~~~~~~~ee~  314 (355)
                      |.++..|+++|+++-. .+ ...+.++....     .+..++|+ |..+|...+++.+++.+.+..  ..++..++++++
T Consensus         2 Ya~va~V~l~~~~~~~~~~~~GfG~LVP~~e~~~g~~~lg~~f~-S~~fp~r~p~~~~ll~~~~Gg~~~~~~~~~~d~~l   80 (112)
T d1seza2           2 YVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFS-SMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTEL   80 (112)
T ss_dssp             EEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEH-HHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHH
T ss_pred             CCcEEEEEEEEchHHcCCCCCceEEEeCCcccCCCceEEEEEEe-cccCCCcCCCCcEEEEEEECCCCCcccccCCHHHH
Confidence            6789999999987633 11 11333322111     13235676 566676653344555555543  345678899999


Q ss_pred             HHHHHHHHhhhcccCCCceeeeeeEEecCCCccc
Q 018455          315 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTH  348 (355)
Q Consensus       315 ~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~  348 (355)
                      ++.++++|+++++.-  ..++..+++||++++|.
T Consensus        81 ~~~a~~dl~~~lgi~--~~P~~~~v~rw~~aiP~  112 (112)
T d1seza2          81 KEIVTSDLKQLLGAE--GEPTYVNHLYWSKAFPL  112 (112)
T ss_dssp             HHHHHHHHHHHHCBC--SCCSSEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHhCCC--CCccEEEEEECCcccCc
Confidence            999999999999753  46788999999999984

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.89  E-value=6.2e-05  Score=63.88  Aligned_cols=126  Identities=12%  Similarity=0.123  Sum_probs=79.2

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhc-----------C----------------
Q 018455           96 ITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH-----------Q----------------  148 (355)
Q Consensus        96 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~-----------~----------------  148 (355)
                      .....+.... ...........++....++..+...+.......+.......           .                
T Consensus       138 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (373)
T d1seza1         138 ESVSGFFQRH-FGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSAN  216 (373)
T ss_dssp             CBHHHHHHHH-HCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSC
T ss_pred             chhhhccccc-ccccchhcccchhhhhhcccccccchhhhHHHHHHHhhhcchhhhhhHHHhhhccccccccchhhhhhh
Confidence            4455555443 45555666777888888888888888766554433211000           0                


Q ss_pred             --CCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCC---eEEEEEe------CCeEEecCEEEEccC
Q 018455          149 --KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC---CISDVVC------GKETYSAGAVVLAVG  217 (355)
Q Consensus       149 --~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~---~v~~v~~------~g~~~~ad~VV~a~p  217 (355)
                        ........++|++. +.+.+++.+  .+++|++|++|++|..+.++.   ....|..      .+++++||.||+|+|
T Consensus       217 ~~~~~~~~~~~~g~~~-l~~~l~~~l--~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p  293 (373)
T d1seza1         217 KKRQRGSFSFLGGMQT-LTDAICKDL--REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAP  293 (373)
T ss_dssp             CSTTCSCBEETTCTHH-HHHHHHTTS--CTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSC
T ss_pred             hcccceeeeecccchH-HHHHHHHHh--ccceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCc
Confidence              00112345788887 667776555  378999999999999876421   1122322      245789999999999


Q ss_pred             hhhHHHhh
Q 018455          218 ISTLQELI  225 (355)
Q Consensus       218 ~~~~~~l~  225 (355)
                      ...+.++.
T Consensus       294 ~~~l~~l~  301 (373)
T d1seza1         294 LCDVKSMK  301 (373)
T ss_dssp             HHHHHTSE
T ss_pred             hHHhhhcc
Confidence            87776653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.87  E-value=2e-05  Score=67.29  Aligned_cols=55  Identities=15%  Similarity=0.155  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +...+.+.+++.|++|+.+++|++|+.++  +++++|.+++++++||+||+|+.++.
T Consensus       150 l~~~l~~~a~~~gv~i~~~~~V~~i~~~~--~~v~~V~T~~g~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         150 AVQLLIKRTESAGVTYRGSTTVTGIEQSG--GRVTGVQTADGVIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTEEEECSEEEECCGGGH
T ss_pred             hhhhHHhhhhcccccccCCceEEEEEEeC--CEEEEEeccceeEECCEEEEecchhH
Confidence            66778888888999999999999999988  56888999888999999999999875

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.82  E-value=3.6e-05  Score=55.73  Aligned_cols=56  Identities=11%  Similarity=0.181  Sum_probs=45.6

Q ss_pred             CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEcc
Q 018455          159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAV  216 (355)
Q Consensus       159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~  216 (355)
                      ++..-+.+.+.+.++++|++|++|++|++|+..++ +++ .|++ +|++++||.||+|+
T Consensus        61 ~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~-~~~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          61 GFDHTLREELTKQLTANGIQILTKENPAKVELNAD-GSK-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTT-SCE-EEEETTSCEEEESEEEECS
T ss_pred             ccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCC-CeE-EEEECCCcEEEeCEEEEeC
Confidence            34344778888999999999999999999998765 345 4766 68899999999985

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.76  E-value=4.9e-05  Score=56.34  Aligned_cols=57  Identities=18%  Similarity=0.337  Sum_probs=45.9

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccC
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVG  217 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p  217 (355)
                      ...+.+.+.+.++++|+++++|+.|++|+...+++++..|.+ +|++++||.||+|+.
T Consensus        76 ~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          76 APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             chhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            333566777888999999999999999998754456766777 678999999999873

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.76  E-value=4.8e-05  Score=55.02  Aligned_cols=57  Identities=14%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccC
Q 018455          159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVG  217 (355)
Q Consensus       159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p  217 (355)
                      ++..-+.+.+.+.++++|++|++|+.|++|..++++  +..|.+ +|++++||.||+|+.
T Consensus        59 ~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g--~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          59 GFDSELRKQLTEQLRANGINVRTHENPAKVTKNADG--TRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             TSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTS--CEEEEETTSCEEEESEEEECSC
T ss_pred             cccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCC--EEEEEECCCCEEEcCEEEEecC
Confidence            343337788888899999999999999999987763  335666 788999999999974

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=8.2e-05  Score=53.65  Aligned_cols=52  Identities=12%  Similarity=0.231  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccC
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVG  217 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p  217 (355)
                      +.+.+.+.++++|+++++++.|++|..+++ +.+ .|.+ +|+++++|.||+|+.
T Consensus        64 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~-~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          64 ISETLVEVMNAEGPQLHTNAIPKAVVKNTD-GSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHHHHSCEEECSCCEEEEEECTT-SCE-EEEETTSCEEEESEEEECSC
T ss_pred             hHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-cEE-EEEECCCCEEEcCEEEEecC
Confidence            677888889999999999999999998776 345 4666 688999999999973

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.61  E-value=8e-05  Score=61.39  Aligned_cols=58  Identities=17%  Similarity=0.314  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE  223 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~  223 (355)
                      +.+.|.+.+++.|++|+++++|++|..++  +++.+|.+ +|++++||.||+|+......+
T Consensus       112 i~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         112 VVDALLTRLKDLGVKIRTNTPVETIEYEN--GQTKAVILQTGEVLETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTCCEEECSCEEECCCCSSSGG
T ss_pred             HHHHHHHHHHHcCCcccCCcEEEEEEEEC--CEEEEEEeCCCCeEecCeEEEccCCccccc
Confidence            67888899999999999999999999987  45766776 688999999999999876544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.60  E-value=7.8e-05  Score=62.62  Aligned_cols=55  Identities=18%  Similarity=0.396  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  221 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~  221 (355)
                      +...+.+.+++.|++|+++++|++|+.++++  + .|.++++++.||+||+|+.++.-
T Consensus       152 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~--v-~V~t~~g~i~a~~VViAaG~~s~  206 (281)
T d2gf3a1         152 CIRAYRELAEARGAKVLTHTRVEDFDISPDS--V-KIETANGSYTADKLIVSMGAWNS  206 (281)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSC--E-EEEETTEEEEEEEEEECCGGGHH
T ss_pred             cccccccccccccccccCCcEEEEEEEECCE--E-EEEECCcEEEcCEEEECCCCcch
Confidence            6678888899999999999999999998853  5 68888788999999999998754

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=9.5e-05  Score=55.04  Aligned_cols=54  Identities=17%  Similarity=0.145  Sum_probs=44.5

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccC
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVG  217 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p  217 (355)
                      ..-+.+.+.+.++++|+++++|+.|++|..++  +++ .|++ +|++++||.||+|+.
T Consensus        82 ~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~--~~~-~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          82 PEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS--GKL-LIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             CHHHHHHHHHHHHTTTCEEECSCCEEEEEEET--TEE-EEEETTSCEEEESEEEECCC
T ss_pred             CHHHHHHHHHHHHhCCcEEEeCCEEEEEEecC--CEE-EEEECCCCEEECCEEEEeec
Confidence            33366778888999999999999999999876  335 4776 788999999999985

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=4.5e-05  Score=54.61  Aligned_cols=92  Identities=13%  Similarity=0.144  Sum_probs=53.4

Q ss_pred             cccEEEEEEEEccCCCCCCCCcceec---cCCCccc--eeeEcccccccccCCCceEEEEEee--CCCCCCCCCHHHHHH
Q 018455          244 SIDVVSVKLWFDKKVTVPNVSNACSG---FGDSLAW--TFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVA  316 (355)
Q Consensus       244 ~~~~~~v~l~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~ee~~~  316 (355)
                      ++.+.|+.+.|++++|..  .+ +.+   .+....+  .+++.+.  +.   .+..+|.+...  .+..+..++++|+++
T Consensus         2 mG~~~Kv~l~f~~~FW~~--~~-~~g~~~~~~~~~~~~~~~~~~~--~~---~~~~vL~~~~~G~~a~~~~~ls~~e~~~   73 (112)
T d2v5za2           2 LGSVIKCIVYYKEPFWRK--KD-YCGTMIIDGEEAPVAYTLDDTK--PE---GNYAAIMGFILAHKARKLARLTKEERLK   73 (112)
T ss_dssp             BCCEEEEEEECSSCGGGG--GT-EEEEEEECSTTCSCSEEEECCC--TT---SCSCEEEEEEETHHHHHHTTSCHHHHHH
T ss_pred             chheEEEEEEcCCCCCCC--CC-ceeeEEecCCCCcEEEEccCcC--cc---CCCcEEEEEeCcHHHHHHHhCCHHHHHH
Confidence            457899999999999942  22 211   1111111  1233222  11   12234333222  345677899999999


Q ss_pred             HHHHHHhhhcccCCCceeeeeeEEecC
Q 018455          317 KAVSYLSKCIKDFSTATVMDHKIRRFP  343 (355)
Q Consensus       317 ~~~~~l~~~~p~~~~~~~~~~~v~~~~  343 (355)
                      .+++.|+++||.....+++.+.+++|.
T Consensus        74 ~~l~~L~~~~g~~~~~~~~~~~~~~W~  100 (112)
T d2v5za2          74 KLCELYAKVLGSLEALEPVHYEEKNWC  100 (112)
T ss_dssp             HHHHHHHHHHTCGGGGCCSEEEEEEGG
T ss_pred             HHHHHHHHHhCccccCCccEEEEcccC
Confidence            999999999975332445556566554

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.55  E-value=8.3e-05  Score=62.20  Aligned_cols=54  Identities=19%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~  220 (355)
                      +...|.+.++++|++|+.+++|++|+.+++   +++|.++++++.||.||+|+.++.
T Consensus       153 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~---~~~V~t~~g~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         153 VCKAYVKAAKMLGAEIFEHTPVLHVERDGE---ALFIKTPSGDVWANHVVVASGVWS  206 (276)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECSSS---SEEEEETTEEEEEEEEEECCGGGT
T ss_pred             chhHHHHHHHHcCCEEecceEEEeEEeecc---eEEEecCCeEEEcCEEEECCCccH
Confidence            667788888899999999999999997653   458988878999999999999875

>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.54  E-value=6.1e-05  Score=53.99  Aligned_cols=80  Identities=14%  Similarity=-0.027  Sum_probs=48.0

Q ss_pred             cccEEEEEEEEccCCCCCCC-CcceeccCCCccceeeEcccccccccCCCceEEEEEee---CCCCCCCCCHHHHHHHHH
Q 018455          244 SIDVVSVKLWFDKKVTVPNV-SNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPLKDDQVVAKAV  319 (355)
Q Consensus       244 ~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~~~ee~~~~~~  319 (355)
                      +.++.|+.+.|++++|.... .......+.+...+ +..+...+    .+..+|. .|.   .+..+..++++++++.++
T Consensus         2 y~~~~Kv~l~f~~~FW~~~g~~~~~~~td~~~~~~-~~~~~~~~----~~~~vL~-~~~~g~~a~~~~~l~~e~~~~~~l   75 (113)
T d2iida2           2 YRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFI-YYPNHNFT----NGVGVII-AYGIGDDANFFQALDFKDCADIVF   75 (113)
T ss_dssp             EECEEEEEEEESSCGGGGGTCCSSEEEESSTTCEE-ECCSSCCT----TSCEEEE-EEEEHHHHHTTTTSCHHHHHHHHH
T ss_pred             CccEEEEEEEcCCCCCCCcCCEeeEEEeCCCceEE-EeCCCCCC----CCceEEE-EEeCCchhHHHHcCCHHHHHHHHH
Confidence            56789999999999994211 11111123334332 22121111    1223433 233   456778899999999999


Q ss_pred             HHHhhhcccC
Q 018455          320 SYLSKCIKDF  329 (355)
Q Consensus       320 ~~l~~~~p~~  329 (355)
                      ++|++++|..
T Consensus        76 ~~L~~~~~~~   85 (113)
T d2iida2          76 NDLSLIHQLP   85 (113)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHcCCc
Confidence            9999999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.34  E-value=0.00019  Score=52.17  Aligned_cols=50  Identities=26%  Similarity=0.366  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEcc
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAV  216 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~  216 (355)
                      +.+.+.+.+++.|+++++|+.|++|+.++   ++..|.++|++++||.||+|+
T Consensus        74 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~---~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          74 FTDVLTEEMEANNITIATGETVERYEGDG---RVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHHHHHHHHTTTEEEEESCCEEEEECSS---BCCEEEESSCEEECSEEEECS
T ss_pred             hHHHHHHHhhcCCeEEEeCceEEEEEcCC---CEEEEEeCCCEEECCEEEEEC
Confidence            66777788889999999999999998643   355577799999999999985

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.30  E-value=0.00044  Score=49.97  Aligned_cols=57  Identities=23%  Similarity=0.310  Sum_probs=43.7

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---C-CeEEecCEEEEccC
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVG  217 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~-g~~~~ad~VV~a~p  217 (355)
                      ....+.+.+.+.+++.|.++++++.|.+|+.+++ +++..+..   + +++++||.||+|+.
T Consensus        61 ~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~-~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          61 KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             CSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             cccchhhhhhhhhhccccEEEcCCEEEEEEecCC-ceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            3333667788889999999999999999998876 44444432   2 46899999999973

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.28  E-value=0.00036  Score=50.36  Aligned_cols=56  Identities=20%  Similarity=0.317  Sum_probs=43.7

Q ss_pred             CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C---CeEEecCEEEEccC
Q 018455          159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KETYSAGAVVLAVG  217 (355)
Q Consensus       159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g~~~~ad~VV~a~p  217 (355)
                      ++..-+.+.+.+.++++|.+|+++++|++|+.++++  + .|++ +   +++++||.||+|+.
T Consensus        60 ~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--v-~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          60 AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQ--V-TVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSC--E-EEEEESSSEEEEEEESEEEECSC
T ss_pred             cccchhHHHHHHHHHhcCceeecCcEEEEEEEeCCE--E-EEEEEECCCCEEEECCEEEEeeC
Confidence            343337788888899999999999999999998753  4 3544 2   25799999999973

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.27  E-value=0.00031  Score=57.99  Aligned_cols=69  Identities=13%  Similarity=0.185  Sum_probs=52.8

Q ss_pred             EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEE-EEEeCCeEEecCEEEEccChhhHHHh
Q 018455          155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCGKETYSAGAVVLAVGISTLQEL  224 (355)
Q Consensus       155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~-~v~~~g~~~~ad~VV~a~p~~~~~~l  224 (355)
                      ++...... +.+.|.+.+++.|++|+++++|++|+..+++..+. .+..++++++||.||+|+....+.++
T Consensus       103 ~~~~~a~~-i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~  172 (253)
T d2gqfa1         103 FCDEGAEQ-IVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGL  172 (253)
T ss_dssp             EETTCTHH-HHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGG
T ss_pred             ccccchhH-HHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCccccccc
Confidence            34444444 77888888999999999999999999876643332 24458899999999999997665554

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.24  E-value=0.00061  Score=48.92  Aligned_cols=56  Identities=11%  Similarity=0.171  Sum_probs=44.3

Q ss_pred             CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEe-cCEEEEcc
Q 018455          159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYS-AGAVVLAV  216 (355)
Q Consensus       159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~-ad~VV~a~  216 (355)
                      ++..-+.+.+.+.++++|+++++++.|++|+..++ +.+ .|++ +|++++ +|.||+|+
T Consensus        60 ~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~-~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          60 KFDESVINVLENDMKKNNINIVTFADVVEIKKVSD-KNL-SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESST-TCE-EEEETTSCEEEEESEEEECC
T ss_pred             cccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCC-CeE-EEEECCCCEEEeCCEEEEeC
Confidence            34444778888899999999999999999998776 345 4666 677764 79999985

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00074  Score=48.85  Aligned_cols=55  Identities=13%  Similarity=0.301  Sum_probs=42.4

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C-----CeEEecCEEEEc
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-----KETYSAGAVVLA  215 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-----g~~~~ad~VV~a  215 (355)
                      +..-+.+.+.+.++++|++|++|++|++|+.++++. ...++. +     +++++||.|++|
T Consensus        62 ~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~-~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          62 MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKN-VVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTT-EEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCc-EEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            444477888888999999999999999999987643 324444 2     247999999987

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00033  Score=49.46  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             cccEEEEEEEEccCCCCCCCCcc-eeccCCCccceeeEcccccccccCCCceEEEEEee---CCCCCCCCCHHHHHHHHH
Q 018455          244 SIDVVSVKLWFDKKVTVPNVSNA-CSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPLKDDQVVAKAV  319 (355)
Q Consensus       244 ~~~~~~v~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~~~ee~~~~~~  319 (355)
                      ++.+.++.+.|++++|....... ....+.+....+.+....      .+..++. .|.   .+..+..++++++++.++
T Consensus         2 ~G~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vL~-~~~~G~~a~~~~~l~~~~~~~~~l   74 (109)
T d2dw4a3           2 FGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNL------YKAPILL-ALVAGEAAGIMENISDDVIVGRCL   74 (109)
T ss_dssp             ECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTTTCEEECC--------CCEEE-EEECHHHHHHHTTSCHHHHHHHHH
T ss_pred             CChhEEEEEEECCCCCCCCCCEeEEEecCCCCceEEeeccCC------CCCCEEE-EEECcHHHHHHHhcCHHHHHHHHH
Confidence            45678999999999994221111 111111111111221111      1222333 333   345677899999999999


Q ss_pred             HHHhhhcccCCCceeeeeeEEecCC
Q 018455          320 SYLSKCIKDFSTATVMDHKIRRFPK  344 (355)
Q Consensus       320 ~~l~~~~p~~~~~~~~~~~v~~~~~  344 (355)
                      +.|+++++.....+++...+++|-.
T Consensus        75 ~~L~~~~~~~~~~~~~~~~~~~W~~   99 (109)
T d2dw4a3          75 AILKGIFGSSAVPQPKETVVSRWRA   99 (109)
T ss_dssp             HHHHHHHCTTTCCCCSEEEECCTTT
T ss_pred             HHHHHHhCccccCcccEEEEeccCC
Confidence            9999999864334555555555543

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.07  E-value=0.00066  Score=48.14  Aligned_cols=94  Identities=14%  Similarity=0.127  Sum_probs=53.1

Q ss_pred             ccEEEEEEEEccCCCCCCCCcceecc-CCCccc--eeeEcccccccccCCCceEEEEEee--CCCCCCCCCHHHHHHHHH
Q 018455          245 IDVVSVKLWFDKKVTVPNVSNACSGF-GDSLAW--TFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAV  319 (355)
Q Consensus       245 ~~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~ee~~~~~~  319 (355)
                      +.+.|+.|.|++++|........+.. ....++  .+.+.+..  .   .+..++.+.+.  .+..+..++++++++.++
T Consensus         3 G~~~Ki~l~F~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l   77 (112)
T d1b5qa2           3 AVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQ--Y---PDANVLLVTVTDEESRRIEQQSDEQTKAEIM   77 (112)
T ss_dssp             ECEEEEEEECSSCCSCCSTTCSEEEEECSSTTSSCEEEECTTT--S---TTCCEEEEEEEHHHHHHHHTSCHHHHHHHHH
T ss_pred             ccEEEEEEEECCCCCCCCCCEEEEEeecCCCCeeEEEEEcccC--C---CCCCEEEEEeCcHHHHHHHhCCHHHHHHHHH
Confidence            46789999999999942211111111 111111  11221111  1   12334433222  345667889999999999


Q ss_pred             HHHhhhcccCCCceeeeeeEEecC
Q 018455          320 SYLSKCIKDFSTATVMDHKIRRFP  343 (355)
Q Consensus       320 ~~l~~~~p~~~~~~~~~~~v~~~~  343 (355)
                      +.|+++||+....+++...+++|-
T Consensus        78 ~~L~~~~~~~~~~~~~~~~~t~W~  101 (112)
T d1b5qa2          78 QVLRKMFPGKDVPDATDILVPRWW  101 (112)
T ss_dssp             HHHHHHCTTSCCCCCSEEECCCTT
T ss_pred             HHHHHHhCcccccCCCEEEeccCC
Confidence            999999986444456666655553

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.04  E-value=0.0013  Score=47.11  Aligned_cols=53  Identities=13%  Similarity=0.204  Sum_probs=41.2

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CC--eEEecCEEEEc
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLA  215 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g--~~~~ad~VV~a  215 (355)
                      +..-+.+.+.+.++++|++|++|+.|++|+.++++  + .|++  +|  ++++||.||++
T Consensus        61 ~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~--~-~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          61 FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDG--V-TVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTE--E-EEEEEETTEEEEEEESEEEEC
T ss_pred             ccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE--E-EEEEEeCCCEEEEEeEEEEEC
Confidence            43337788888899999999999999999988753  4 2433  55  47899999974

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.99  E-value=0.0012  Score=47.78  Aligned_cols=57  Identities=18%  Similarity=0.207  Sum_probs=42.6

Q ss_pred             CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CC--eEEecCEEEEcc
Q 018455          159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAV  216 (355)
Q Consensus       159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g--~~~~ad~VV~a~  216 (355)
                      ++..-+.+.+.+.+++.|++|++|+.|.+|+.++++ ....+..  +|  ++++||.|++|.
T Consensus        63 ~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          63 TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDG-VKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             TSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSS-EEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhhhcchhhhhhhhhcccceEEcCCceEEEEEccCe-EEEEEEECCCCeEEEEEcCEEEEcC
Confidence            344447788889999999999999999999988764 2223444  33  468999999874

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=96.70  E-value=0.002  Score=54.92  Aligned_cols=58  Identities=22%  Similarity=0.232  Sum_probs=46.6

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChh
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~  219 (355)
                      +..+.+.|.+.+.+.|++|+++++|++|..+++ |+|.+|.+   +++  ++.|+.||+|+...
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~-G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~  213 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKADAVVIAAGGF  213 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSS-SCCCEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeeccccccccc-ccccceEEEeecccEEEEeCCeEEEcCCCc
Confidence            334677888888889999999999999998766 57888875   232  58999999999754

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.63  E-value=0.003  Score=53.24  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~~~  220 (355)
                      +...+.+.+.+.|++|+++++|++|..+++ |+|.+|.+   ++  .++.|+.||+|+....
T Consensus       147 ~~~~l~~~a~~~gv~i~~~~~v~~li~~~~-G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  207 (308)
T d1y0pa2         147 VVQVLYDNAVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKADAVILATGGFA  207 (308)
T ss_dssp             HHHHHHHHHHHTTCEEESSEEEEEEEECTT-SCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHhccceEEEeeccchhhhhcc-cccccccccccccceeEeecCeEEEccCccc
Confidence            567777888889999999999999998776 57888876   23  3688999999998643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.53  E-value=0.0022  Score=46.12  Aligned_cols=50  Identities=18%  Similarity=0.196  Sum_probs=39.4

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccC
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVG  217 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p  217 (355)
                      ..-+.+.+.+.++++|++|+++++|+++.  +  +   .|++ +|+++.||.||+|+.
T Consensus        71 ~~~~~~~~~~~l~~~GV~i~~~~~v~~~~--~--~---~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          71 PATLADFVARYHAAQGVDLRFERSVTGSV--D--G---VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEESCCEEEEE--T--T---EEEETTSCEEECSEEEECSC
T ss_pred             CHHHHHHHHHHHHHCCcEEEeCCEEEEEe--C--C---EEEECCCCEEECCEEEEeeC
Confidence            33366777888899999999999999876  2  2   2444 789999999999873

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.006  Score=43.99  Aligned_cols=59  Identities=15%  Similarity=0.146  Sum_probs=42.5

Q ss_pred             CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC------eEEecCEEEEccC
Q 018455          159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK------ETYSAGAVVLAVG  217 (355)
Q Consensus       159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g------~~~~ad~VV~a~p  217 (355)
                      ++..-+.+.+.+.++++|++|++|++|++|+.+++|-++..+.. .|      ...+||.||+|+.
T Consensus        60 ~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          60 SFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             chhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            34444778888889999999999999999998876422322222 22      2568999999973

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.43  E-value=0.003  Score=45.44  Aligned_cols=51  Identities=20%  Similarity=0.276  Sum_probs=41.3

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccC
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVG  217 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p  217 (355)
                      +..-+.+.+.+.++++|+++++|+.|.++.  ++     ++.+++++++||.||+|+.
T Consensus        70 ~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~--~~-----~v~~~~~~i~~D~vi~a~G  120 (122)
T d1xhca2          70 LDEELSNMIKDMLEETGVKFFLNSELLEAN--EE-----GVLTNSGFIEGKVKICAIG  120 (122)
T ss_dssp             CCHHHHHHHHHHHHHTTEEEECSCCEEEEC--SS-----EEEETTEEEECSCEEEECC
T ss_pred             CCHHHHHHHHHHHHHCCcEEEeCCEEEEEe--CC-----EEEeCCCEEECCEEEEEEE
Confidence            444466778888999999999999999885  32     3566899999999999985

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.38  E-value=0.0035  Score=45.30  Aligned_cols=55  Identities=16%  Similarity=0.207  Sum_probs=42.8

Q ss_pred             cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccC
Q 018455          160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVG  217 (355)
Q Consensus       160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p  217 (355)
                      +..-+.+.+.+.++++|++++++++|++++.++++  + .|++   +|  ++++||.|++|+.
T Consensus        65 ~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g--~-~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          65 ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDG--V-YVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             SCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTE--E-EEEEESSSCCSSCEEESCEEECCC
T ss_pred             chhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCc--E-EEEEEeCCCCeEEEEcCEEEEecC
Confidence            33336778888899999999999999999988863  4 3443   23  4799999999974

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.37  E-value=0.0042  Score=52.65  Aligned_cols=56  Identities=20%  Similarity=0.280  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~~  220 (355)
                      +.+.|.+.+++.|++|+++++|+++.++++ ++|.+|..   +++  .+.|+.||+|+....
T Consensus       150 i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~-g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  210 (317)
T d1qo8a2         150 IIDTLRKAAKEQGIDTRLNSRVVKLVVNDD-HSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  210 (317)
T ss_dssp             HHHHHHHHHHHTTCCEECSEEEEEEEECTT-SBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             hhHHHHHHhhhccceeeeccchhheeeccc-ccceeeEeecccceEEEEeccceEEeccccc
Confidence            678888889999999999999999988766 67888875   343  578999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.23  E-value=0.0035  Score=44.53  Aligned_cols=50  Identities=22%  Similarity=0.336  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC--CeEEecCEEEEccC
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVG  217 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~--g~~~~ad~VV~a~p  217 (355)
                      +.+.+.+.++++|++++++++|+++.  +  +.......+  +++++||.||+|+.
T Consensus        64 ~~~~l~~~l~~~gV~i~~~~~V~~i~--~--~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          64 LTAPVAESLKKLGIALHLGHSVEGYE--N--GCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHHHTCEEETTCEEEEEE--T--TEEEEECSSSCCCEECCSCEEECCC
T ss_pred             hHHHHHHHHHhhcceEEcCcEEEEEc--C--CeEEEEEcCCCeEEEEcCEEEEecC
Confidence            67788888999999999999999996  3  212112222  35799999999973

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.14  E-value=0.00058  Score=58.30  Aligned_cols=107  Identities=9%  Similarity=-0.028  Sum_probs=71.9

Q ss_pred             cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCC----CcceEEecCCcchHHHHHH
Q 018455           93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK----NFDLVWCRGTLREKIFEPW  168 (355)
Q Consensus        93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~----~~~~~~~~gg~~~~l~~~l  168 (355)
                      .+..++.+|+.+. +++.+.+.++.|+....|+.+++++|+.++..+-...  ....    ..-..+|++|..+ +.+. 
T Consensus       129 ~~~~n~ee~~~~~-~G~~lye~f~~pYt~K~Wg~~~~~L~~~~~~r~p~r~--~~d~~yf~d~~q~~Pk~Gyt~-~~e~-  203 (314)
T d2bi7a1         129 ADPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRF--NYDDNYFNHKFQGMPKCGYTQ-MIKS-  203 (314)
T ss_dssp             SSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCS--SSCCCSCCCSEEEEETTHHHH-HHHH-
T ss_pred             CCchhhhHHHHHh-chhhhHHhhcCcchhhhhccCCcccchhhhhccceec--cccccccchhhheeecccHHH-HHHH-
Confidence            3456899999987 8999999999999999999999999987654321100  0000    0112578888766 3333 


Q ss_pred             HHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH
Q 018455          169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ  222 (355)
Q Consensus       169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~  222 (355)
                        .|...+.+|++++.+.                .++...+|+||.|.|.+.+-
T Consensus       204 --mL~~~~i~v~ln~~~~----------------~~~~~~~d~vI~TgpiD~~f  239 (314)
T d2bi7a1         204 --ILNHENIKVDLQREFI----------------VEERTHYDHVFYSGPLDAFY  239 (314)
T ss_dssp             --HHCSTTEEEEESCCCC----------------GGGGGGSSEEEECSCHHHHT
T ss_pred             --HHhCCCCeeecccccc----------------ccccccceeEEEeccHHHHh
Confidence              3444567887776642                12234579999999998754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.35  E-value=0.029  Score=40.00  Aligned_cols=58  Identities=21%  Similarity=0.221  Sum_probs=41.5

Q ss_pred             CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCC--CeEEEEEe---C-Ce--EEecCEEEEccC
Q 018455          159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVC---G-KE--TYSAGAVVLAVG  217 (355)
Q Consensus       159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~--~~v~~v~~---~-g~--~~~ad~VV~a~p  217 (355)
                      +...-+.+.+.+.+++.|++|++|+.|++++..+++  +++ .++.   + ++  ..++|.|++|+.
T Consensus        57 ~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          57 GFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRL-KVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             TSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEE-EEEEECTTSCEEEEEEESEEECCCC
T ss_pred             cCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEE-EEEEEECCCCcEEEEECCEEEEEeC
Confidence            344447788999999999999999999999875432  233 3443   2 23  457999999873

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=94.71  E-value=0.032  Score=47.95  Aligned_cols=58  Identities=16%  Similarity=0.071  Sum_probs=39.3

Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C--C-----eEEecCEEEEccChhhHHHhh
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K-----ETYSAGAVVLAVGISTLQELI  225 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g-----~~~~ad~VV~a~p~~~~~~l~  225 (355)
                      |..+++..+.+|+++++|++|..+++++..+.+.. +  +     ++++||.||+|..+-...+|+
T Consensus       229 L~~a~~~g~~~i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LL  294 (370)
T d3coxa1         229 LAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL  294 (370)
T ss_dssp             HHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHhCCCcEEEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHHHH
Confidence            43334444479999999999999876432222322 2  2     358899999999886666665

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=94.57  E-value=0.061  Score=45.29  Aligned_cols=56  Identities=14%  Similarity=0.166  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 018455          162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~  219 (355)
                      ..+..+|.+.+.+.|++|+.+++|.++..++  +++.++..    +|+  ++.|+.||+||...
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~--~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~  219 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQD--GKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhccccccceeeeeeccccc--ccccceeEEeccCCcEEEEecCeEEEecccc
Confidence            3366788888888999999999999999987  45766654    454  57899999998764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=94.37  E-value=0.041  Score=47.10  Aligned_cols=55  Identities=15%  Similarity=0.063  Sum_probs=40.2

Q ss_pred             HHHcC-cEEEcCceeeEEEecCCCCeEEEEEe-C--C-----eEEecCEEEEccChhhHHHhhh
Q 018455          172 MRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-G--K-----ETYSAGAVVLAVGISTLQELIK  226 (355)
Q Consensus       172 l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g-----~~~~ad~VV~a~p~~~~~~l~~  226 (355)
                      +++.| .+|++++.|++|+.+++++..++|.. +  +     ++++||.||+|..+-...+|+-
T Consensus       228 a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LLl  291 (367)
T d1n4wa1         228 ALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLV  291 (367)
T ss_dssp             HHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             HHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCHHHHH
Confidence            34455 89999999999999876544444543 2  2     3688999999999877766653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.23  E-value=0.047  Score=45.53  Aligned_cols=54  Identities=17%  Similarity=0.021  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHcCc--EEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       164 l~~~l~~~l~~~G~--~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +.+-+.+.+++.+.  .|++|++|++++.+++. ..|.|.+ ++++++||.||+|+..
T Consensus        87 ~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~-~~W~V~~~~~~~~~~~~~i~atG~  143 (298)
T d1w4xa1          87 ILRYINFVADKFDLRSGITFHTTVTAAAFDEAT-NTWTVDTNHGDRIRARYLIMASGQ  143 (298)
T ss_dssp             HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTT-TEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHcCCcccccCCcEEEEEEEecCC-CceeeccccccccccceEEEeecc
Confidence            33445555666665  69999999999976542 3677887 6789999999999985

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.016  Score=45.93  Aligned_cols=42  Identities=17%  Similarity=0.240  Sum_probs=34.6

Q ss_pred             HHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      +++.|++++++++|++|..++  +   .|++ +|+++.||.||+|+..
T Consensus        93 ~~~~gI~~~~g~~V~~id~~~--~---~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVRD--N---MVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGGG--T---EEEETTSCEEEEEEEEECCCE
T ss_pred             HHHCCeEEEeCCEEEEeeccC--c---eeeeccceeeccceEEEeeee
Confidence            466789999999999998765  2   3555 7889999999999874

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.01  E-value=0.048  Score=45.70  Aligned_cols=52  Identities=21%  Similarity=0.287  Sum_probs=38.7

Q ss_pred             HHHHHH-HHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 018455          166 EPWMDS-MRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       166 ~~l~~~-l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~  219 (355)
                      ..+.+. .+..+++|+.+++|++|..++  |+|.++..    +|+  .+.|+.||+||...
T Consensus       138 ~~~l~~~~~~~~v~i~~~~~v~~Ll~d~--g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~  196 (311)
T d1kf6a2         138 HTLFQTSLQFPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (311)
T ss_dssp             HHHHHHHTTCTTEEEEETEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             HhHHHHHHccCcceeEeeeEeeeeEecC--CcceeEEEEEcCCCcEEEEECCEEEEcCCCc
Confidence            333333 444579999999999999887  56777754    465  45899999999864

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.44  E-value=0.053  Score=45.83  Aligned_cols=54  Identities=17%  Similarity=-0.099  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C---Ce---EEecCEEEEccChhh
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE---TYSAGAVVLAVGIST  220 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g~---~~~ad~VV~a~p~~~  220 (355)
                      +.+-|...++..+..|++|+.|++|+.+++  + +.|++ +   ++   +..||.||+|+....
T Consensus       115 ~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~--~-w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         115 IQEYQRIYAQPLLPFIKLATDVLDIEKKDG--S-WVVTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             HHHHHHHHHGGGGGGEECSEEEEEEEEETT--E-EEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             HHHHHHHHHHHhhhcccCceEEEEEEecCC--E-EEEEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            334455555667789999999999999874  3 34554 1   22   457999999998754

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=92.00  E-value=0.13  Score=43.65  Aligned_cols=54  Identities=13%  Similarity=0.155  Sum_probs=42.5

Q ss_pred             HcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhHHHhhhc
Q 018455          174 TRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTLQELIKN  227 (355)
Q Consensus       174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~~~~l~~~  227 (355)
                      ..|.+|++++.|++|..+++++++++|.+    +|+  ++.|+.||++..+-...+|+-.
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~  289 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVN  289 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHH
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhh
Confidence            35689999999999999865567888864    344  5789999999999877776543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.36  E-value=0.14  Score=40.93  Aligned_cols=49  Identities=18%  Similarity=0.247  Sum_probs=40.1

Q ss_pred             HcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhh
Q 018455          174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI  225 (355)
Q Consensus       174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~  225 (355)
                      ..+++|+++++|..|...+++  + .|++ +|+.+++|+|++++|...+....
T Consensus       222 ~~~~~i~~~~~v~~i~~~~~~--v-~v~~~~g~~~~~d~~~~~~~~~~l~~~~  271 (347)
T d1b5qa1         222 IVDPRLQLNKVVREIKYSPGG--V-TVKTEDNSVYSADYVMVSASLGVLQSDL  271 (347)
T ss_dssp             BCCTTEESSCCEEEEEECSSC--E-EEEETTSCEEEESEEEECSCHHHHHTTS
T ss_pred             hcccccccccccccccccCcc--E-EEEECCCCEEEcCEEEeecCHHHHhhcc
Confidence            456799999999999998753  5 4666 78899999999999998876543

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=90.69  E-value=0.43  Score=37.62  Aligned_cols=48  Identities=19%  Similarity=0.153  Sum_probs=35.5

Q ss_pred             HHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455          170 DSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  220 (355)
Q Consensus       170 ~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~  220 (355)
                      +.+.. .+.+|+ ...|.+|..++  +++.+|++ +|.++.|+.||+|+..-.
T Consensus        75 ~~l~~~~nL~i~-q~~V~dli~e~--~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          75 YLLEGLRPLHLF-QATATGLLLEG--NRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             HHHHTCTTEEEE-ECCEEEEEEET--TEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHhhhcCHHHH-hccceeeEecc--cceeeEEeccccEEEEeEEEEccCcce
Confidence            33443 366776 44577888877  55888988 688999999999998654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.75  E-value=0.43  Score=35.12  Aligned_cols=47  Identities=19%  Similarity=0.317  Sum_probs=35.1

Q ss_pred             HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCe--EEecCEEEEccC
Q 018455          166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE--TYSAGAVVLAVG  217 (355)
Q Consensus       166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~--~~~ad~VV~a~p  217 (355)
                      ..+...++..|+++..++.|.+|.  ++ | + .+..+|+  +++||.||+|+.
T Consensus       112 ~~~~~~~~~~gv~~~~~~~v~~i~--~~-g-v-~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         112 WIHRTTLLSRGVKMIPGVSYQKID--DD-G-L-HVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHHTTCEEECSCEEEEEE--TT-E-E-EEEETTEEEEECCSEEEECCC
T ss_pred             HHHHHHHhhCCeEEEeeeEEEEEc--CC-C-C-EEecCCeEEEEECCEEEECCC
Confidence            345566788999999999999986  33 2 3 2445553  589999999985

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.19  E-value=0.35  Score=35.66  Aligned_cols=44  Identities=23%  Similarity=0.164  Sum_probs=34.3

Q ss_pred             HHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455          171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  219 (355)
Q Consensus       171 ~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~  219 (355)
                      .+.+.|.+++++++|++|....    . .+..+++++.+|.+|+|+...
T Consensus        61 ~~~~~~v~~~~~~~v~~i~~~~----~-~~~~~~~~i~~D~li~a~G~~  104 (167)
T d1xhca1          61 WYRKRGIEIRLAEEAKLIDRGR----K-VVITEKGEVPYDTLVLATGAP  104 (167)
T ss_dssp             HHHHHTEEEECSCCEEEEETTT----T-EEEESSCEEECSEEEECCCEE
T ss_pred             HHHhccceeeeecccccccccc----c-cccccccccccceeEEEEEec
Confidence            3456789999999999997533    1 355678889999999998754

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=88.00  E-value=0.48  Score=40.09  Aligned_cols=53  Identities=13%  Similarity=0.177  Sum_probs=38.3

Q ss_pred             HHHcCcEEEcCceeeEEEecCCCCeEEEEEeC------Ce--EEecC-EEEEccChhhHHHhhh
Q 018455          172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------KE--TYSAG-AVVLAVGISTLQELIK  226 (355)
Q Consensus       172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~------g~--~~~ad-~VV~a~p~~~~~~l~~  226 (355)
                      +.+.+.+|++++.|++|..++  +++++|.+.      ++  ++.|+ .||+|..+-...+||-
T Consensus       201 ~~r~nl~i~t~~~V~rI~~d~--~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl  262 (360)
T d1kdga1         201 LARPNFTFKTNVMVSNVVRNG--SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILF  262 (360)
T ss_dssp             HTCTTEEEECSCCEEEEEEET--TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             hcccccccccCcEEEEEEEeC--CEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHH
Confidence            333457999999999999977  678899871      22  34444 4999988776666653

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=87.85  E-value=0.46  Score=40.62  Aligned_cols=55  Identities=16%  Similarity=0.208  Sum_probs=40.6

Q ss_pred             HHHcCcEEEcCceeeEEEecCCCC--eEEEEEe---CCe--EEecCE-EEEccChhhHHHhhh
Q 018455          172 MRTRGCEFLDGRRVTDFIYDEERC--CISDVVC---GKE--TYSAGA-VVLAVGISTLQELIK  226 (355)
Q Consensus       172 l~~~G~~i~l~~~V~~I~~~~~~~--~v~~v~~---~g~--~~~ad~-VV~a~p~~~~~~l~~  226 (355)
                      +++.+.+|++++.|++|..++++.  ++++|..   +|+  ++.|+. ||+|..+-...+|+-
T Consensus       235 ~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl  297 (385)
T d1cf3a1         235 YQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILE  297 (385)
T ss_dssp             TTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred             hcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHH
Confidence            345678999999999999886522  6778865   564  567776 999988776666654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.46  E-value=0.57  Score=35.68  Aligned_cols=47  Identities=17%  Similarity=0.284  Sum_probs=35.4

Q ss_pred             HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChh
Q 018455          170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS  219 (355)
Q Consensus       170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~  219 (355)
                      +.+++.|.+|++++.|++|..+++  .+ .+..  +|+  ++.+|.+|+|+...
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~~~~--~v-~~~~~~~g~~~~~~~D~li~a~G~~  114 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQPKEH--QV-TVKDLVSGEERVENYDKLIISPGAV  114 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEETTTT--EE-EEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHHHHCCcEEEEeeceeeEeeccc--cc-eeeecccccccccccceeeEeecce
Confidence            456778999999999999998763  34 3432  343  57899999999864

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.35  E-value=1.1  Score=32.56  Aligned_cols=27  Identities=11%  Similarity=0.052  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHcCcEEEcCceeeEEEec
Q 018455          165 FEPWMDSMRTRGCEFLDGRRVTDFIYD  191 (355)
Q Consensus       165 ~~~l~~~l~~~G~~i~l~~~V~~I~~~  191 (355)
                      ...+.+.+++.|+++++++.|.+|..+
T Consensus        85 ~~~~~~~l~~~GV~i~~~~~v~~i~~~  111 (156)
T d1djqa2          85 YPNMMRRLHELHVEELGDHFCSRIEPG  111 (156)
T ss_dssp             HHHHHHHHHHTTCEEEETEEEEEEETT
T ss_pred             HHHHHHHHhhccceEEeccEEEEecCc
Confidence            356778888999999999999999853

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.61  E-value=2  Score=29.94  Aligned_cols=50  Identities=10%  Similarity=0.193  Sum_probs=37.0

Q ss_pred             HHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccC
Q 018455          166 EPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVG  217 (355)
Q Consensus       166 ~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p  217 (355)
                      +.+.+.+.+.+ .+|+++++|.+|.-+++  ++.+|++    +|  +++.+|.|.+++.
T Consensus        69 ~~~~~~~~~~~~I~v~~~~~v~~i~G~~~--~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          69 QVLQDKLRSLKNVDIILNAQTTEVKGDGS--KVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             HHHHHHHHTCTTEEEESSEEEEEEEESSS--SEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             cccccccccccceeEEcCcceEEEEcccc--ceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            34556666654 89999999999997653  3777765    24  4689999998864

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=84.53  E-value=0.78  Score=39.26  Aligned_cols=54  Identities=19%  Similarity=0.199  Sum_probs=39.1

Q ss_pred             HHcCcEEEcCceeeEEEecCC--CCeEEEEEe---CCe--EEecCE-EEEccChhhHHHhhh
Q 018455          173 RTRGCEFLDGRRVTDFIYDEE--RCCISDVVC---GKE--TYSAGA-VVLAVGISTLQELIK  226 (355)
Q Consensus       173 ~~~G~~i~l~~~V~~I~~~~~--~~~v~~v~~---~g~--~~~ad~-VV~a~p~~~~~~l~~  226 (355)
                      .+.+.+|++++.|++|..+++  +.++++|.+   ++.  ++.|++ ||+|..+-...+||-
T Consensus       242 ~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl  303 (391)
T d1gpea1         242 QRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILE  303 (391)
T ss_dssp             TCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred             cchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHH
Confidence            346789999999999987632  236888865   454  567876 999888766666553

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=83.68  E-value=0.72  Score=34.50  Aligned_cols=40  Identities=28%  Similarity=0.314  Sum_probs=32.4

Q ss_pred             HcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455          174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI  218 (355)
Q Consensus       174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~  218 (355)
                      ..+++++++++|.+|..+.  .   .+.+ +|+++.+|.||+|+..
T Consensus        67 ~~~i~~~~~~~v~~i~~~~--~---~~~~~~g~~~~~D~vi~a~G~  107 (183)
T d1d7ya1          67 APEVEWLLGVTAQSFDPQA--H---TVALSDGRTLPYGTLVLATGA  107 (183)
T ss_dssp             STTCEEEETCCEEEEETTT--T---EEEETTSCEEECSEEEECCCE
T ss_pred             cCCeEEEEecccccccccc--c---eeEecCCcEeeeeeEEEEEEE
Confidence            4578999999999998765  2   2444 7899999999999874

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.66  E-value=3.2  Score=28.79  Aligned_cols=51  Identities=14%  Similarity=0.257  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C----C--eEEecCEEEEcc
Q 018455          164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G----K--ETYSAGAVVLAV  216 (355)
Q Consensus       164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~----g--~~~~ad~VV~a~  216 (355)
                      +.+.+.+..+..+..+++++.|.+|.-++.  .+.+|++ +    +  +++.+|.|++++
T Consensus        68 ~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~--~v~~v~l~~~~~~e~~~~l~~dgvFv~i  125 (126)
T d1trba2          68 LIKRLMDKVENGNIILHTNRTLEEVTGDQM--GVTGVRLRDTQNSDNIESLDVAGLFVAI  125 (126)
T ss_dssp             HHHHHHHHHHTSSEEEECSCEEEEEEECSS--SEEEEEEECCTTCCCCEEEECSEEEECS
T ss_pred             HHHHHHHhhcccceeEecceEEEEEECCCC--ceEEEEEEECCCCceEEEEECCEEEEEe
Confidence            445555555556789999999999998653  3777775 2    2  468999999876

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=83.25  E-value=2.2  Score=35.22  Aligned_cols=59  Identities=14%  Similarity=0.174  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEE-e---CCe--EEecCEEEEccChhh
Q 018455          161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-C---GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~-~---~g~--~~~ad~VV~a~p~~~  220 (355)
                      +..+.+.|.+.+++.+++++.++.+..+...++ +++.++. .   +|+  .+.|+.||+|+....
T Consensus       142 G~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~-~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~  206 (330)
T d1neka2         142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (330)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEESCEEECCCCCG
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEEEEEEeeeecc-ccceeeeeEEccCCcEEEEeccEEEEcCCCcc
Confidence            333667888888888999999999999988655 3344443 2   354  578999999998653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=80.91  E-value=1.4  Score=34.64  Aligned_cols=46  Identities=13%  Similarity=0.082  Sum_probs=37.4

Q ss_pred             HcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHH
Q 018455          174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQ  222 (355)
Q Consensus       174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~  222 (355)
                      ..+.+++++++|++|..++++  + .|++ ||+++++|.+|.|.......
T Consensus       108 ~~~~~~~~~~~v~~~~~~~~~--v-~v~~~dG~~~~~d~~v~adG~~s~~  154 (265)
T d2voua1         108 FGPERYHTSKCLVGLSQDSET--V-QMRFSDGTKAEANWVIGADGGASVV  154 (265)
T ss_dssp             HCSTTEETTCCEEEEEECSSC--E-EEEETTSCEEEESEEEECCCTTCHH
T ss_pred             cccceeecCcEEEEEEeeCCc--e-EEEECCCCEEEEEEEeccccccccc
Confidence            346899999999999998753  5 4666 78899999999999876543

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=80.54  E-value=1.8  Score=35.14  Aligned_cols=53  Identities=21%  Similarity=0.225  Sum_probs=39.6

Q ss_pred             HHHHHHHcCcEEEcCceeeEEEecCCC-----CeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455          168 WMDSMRTRGCEFLDGRRVTDFIYDEER-----CCISDVVC----GKE--TYSAGAVVLAVGIST  220 (355)
Q Consensus       168 l~~~l~~~G~~i~l~~~V~~I~~~~~~-----~~v~~v~~----~g~--~~~ad~VV~a~p~~~  220 (355)
                      +.+.++..+++++.++++.++..+++.     ++|+++..    +++  .+.++.||+|+....
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~  207 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  207 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccc
Confidence            445566678999999999999987631     25778765    343  578999999998753

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.44  E-value=3.5  Score=28.87  Aligned_cols=50  Identities=10%  Similarity=0.087  Sum_probs=35.1

Q ss_pred             HHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEcc
Q 018455          167 PWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAV  216 (355)
Q Consensus       167 ~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~  216 (355)
                      .+.+.+.+.+ .+|++++.|.+|.-++..+.+.++.+    +|  +++.+|.|.+++
T Consensus        74 ~~~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          74 IMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             HHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             hhhhccccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            3555665554 79999999999998653223656654    23  478999998875