Citrus Sinensis ID: 018460

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFVL
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccEEEEEcccEEcHHHHHHHHHHHHHHHHHHcccccHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccEEcccccccccccccccccHHccccccccHHHHHHcccccccccEEHcccccccccccccccEccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccEEEEEEcccEEHHHHHHHHHHHHHHHHHHEHccccEEEEEccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MGLASVIysgvqaphkfdslllrfsptstsqvpkltsllhfcnsqaptfysvshnrrgqyspllacakgteqeddlstsevgrsssqshendntshspttvddaerqiegresytsSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFklfaseeddtdlsdnfivktcqrfipvttyydgnrfftnqdgmrkaTPLLLTVAVIELSDIafavdsipavfgvtrdpfivFSSNLFAILGLRSLFTLISEGmadleylqPSIAVVLGFIGCKMILDYFVL
Flexible Loop (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVgrsssqshendntshspttvddaerqIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFVL
Low Complexity Region (SEG)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFVL
Disordered region (IsUnstruct)
*****VIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLAC**************************************************SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFV*
Disordered Region (DISOPRED)
***ASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSV***********************LSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFA**********NFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFVL
Disordered Region (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAK************************************ERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFVL
Disordered Region (DISPRO)
*GLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAK*****************************************GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFVL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
P96554	319	Uncharacterized membrane	yes	no	0.650	0.724	0.443	1e-52
P60067	320	Inner membrane protein al	yes	no	0.698	0.775	0.389	2e-46
Q83Q35	320	Inner membrane protein al	yes	no	0.594	0.659	0.429	4e-46
P42601	321	Inner membrane protein al	N/A	no	0.594	0.657	0.429	5e-46
Q8XAJ0	321	Inner membrane protein al	N/A	no	0.594	0.657	0.429	5e-46
Q8FDE1	321	Inner membrane protein al	yes	no	0.594	0.657	0.429	5e-46
Q8Z3L5	322	Inner membrane protein al	N/A	no	0.594	0.655	0.438	1e-45
Q8ZLX2	322	Inner membrane protein al	yes	no	0.594	0.655	0.438	1e-45
Q92GA4	301	Uncharacterized membrane	yes	no	0.681	0.803	0.351	3e-42
Q1RKF1	302	Uncharacterized membrane	yes	no	0.681	0.801	0.338	1e-41

>sp|P96554|Y319_MYXXA Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus PE=3 SV=1

 Score =  207 bits (526), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/232 (44%), Positives = 152/232 (65%), Gaps = 1/232 (0%)

Query: 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNR 181
           A  VS A+ FG GV +  G     +F  GY++E+SLSVDN+FVFV+IF   ++P +YQ+R
Sbjct: 48  ALWVSLALVFGAGVWWKFGPEPGLQFITGYLIEKSLSVDNIFVFVVIFSALRIPALYQHR 107

Query: 182 VLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFI 241
           VL +GI  A+  R  +I  G A L RF  +  V  G L+ +  KLF     + +  +  +
Sbjct: 108 VLFWGILSALALRAIMIFAGVAMLARFHWLIYVFGGFLIITGVKLFLQRNKEDNPEEGAL 167

Query: 242 VKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRD 301
           ++  +R IP T  +DG+ FFT ++G + ATPLL+ + ++E SDI FA+DSIPA+F VT D
Sbjct: 168 MRLARRTIPSTPNFDGHHFFTVENGRKLATPLLMALLLVEASDILFALDSIPAIFAVTTD 227

Query: 302 PFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKM-ILDY 352
           PFIVF+SN+FAILGLRS+F +++  +    YL+  ++ VL F+G KM I+D+
Sbjct: 228 PFIVFTSNIFAILGLRSMFFMLAGAVEKFSYLKVGLSAVLVFVGTKMAIIDF 279

Myxococcus xanthus (taxid: 34)

>sp|P60067|ALX_PHOLL Inner membrane protein alx OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=alx PE=3 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/257 (38%), Positives = 153/257 (59%), Gaps = 9/257 (3%)

Query: 106 RQIEGRESYTSSVKTVAFCVSTAVAFGLG--------VGFIEGASKASEFFAGYILEQSL 157
           R+ E   S+  +       VS ++ F LG        VG     S+   F  GY+LE++L
Sbjct: 30  RKKEQAMSFRQAAVWSVIWVSLSLLFALGLWWYCRETVGVAVANSQVMAFLTGYLLEKAL 89

Query: 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAG 217
           +VDN+FV++++F YF +P   Q RVL YG+ GAIV R  +I  G+  + +F  +  +   
Sbjct: 90  AVDNVFVWLMLFSYFAIPANLQRRVLIYGVLGAIVLRTVMIFAGSWLVSQFSWILYLFGL 149

Query: 218 ILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTV 277
            LL +  K+   +EDD+ + D   V+  +  I +T    G RFF  + G+  ATPL+L +
Sbjct: 150 FLLVTGVKMALVKEDDSPIGDKPFVRWLKAHIRITDNLHGERFFVKEKGLLYATPLILVL 209

Query: 278 AVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSI 337
            ++E+SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++        L+  +
Sbjct: 210 ILVEISDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAEKFTMLKYGL 269

Query: 338 AVVLGFIGCKM-ILDYF 353
           +V+L FIG KM I+D++
Sbjct: 270 SVILAFIGIKMLIIDFY 286

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

>sp|Q83Q35|ALX_SHIFL Inner membrane protein alx OS=Shigella flexneri GN=alx PE=3 SV=1

 Score =  185 bits (470), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 141/212 (66%), Gaps = 1/212 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKM-ILDYF 353
           ++        L+  +AV+L FIG KM I+D++
Sbjct: 255 LAGVAERFSMLKYGLAVILVFIGIKMLIVDFY 286

Shigella flexneri (taxid: 623)

>sp|P42601|ALX_ECOLI Inner membrane protein alx OS=Escherichia coli (strain K12) GN=alx PE=1 SV=2

 Score =  185 bits (469), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 141/212 (66%), Gaps = 1/212 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKM-ILDYF 353
           ++        L+  +AV+L FIG KM I+D++
Sbjct: 255 LAGVAERFSMLKYGLAVILVFIGIKMLIVDFY 286

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q8XAJ0|ALX_ECO57 Inner membrane protein alx OS=Escherichia coli O157:H7 GN=alx PE=3 SV=1

 Score =  185 bits (469), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 141/212 (66%), Gaps = 1/212 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKM-ILDYF 353
           ++        L+  +AV+L FIG KM I+D++
Sbjct: 255 LAGVAERFSMLKYGLAVILVFIGIKMLIVDFY 286

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q8FDE1|ALX_ECOL6 Inner membrane protein alx OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=alx PE=3 SV=1

 Score =  185 bits (469), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 141/212 (66%), Gaps = 1/212 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKM-ILDYF 353
           ++        L+  +AV+L FIG KM I+D++
Sbjct: 255 LAGVAERFSMLKYGLAVILVFIGIKMLIVDFY 286

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|Q8Z3L5|ALX_SALTI Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/212 (43%), Positives = 141/212 (66%), Gaps = 1/212 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T   +   FF 
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPLLL + ++E SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLLLVLIMVEFSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKM-ILDYF 353
           +S        L+  +AV+L FIG KM I+D++
Sbjct: 255 LSGVAERFSMLKYGLAVILVFIGIKMLIVDFY 286

Salmonella typhi (taxid: 90370)

>sp|Q8ZLX2|ALX_SALTY Inner membrane protein alx OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alx PE=3 SV=1

 Score =  183 bits (465), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/212 (43%), Positives = 141/212 (66%), Gaps = 1/212 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T   +   FF 
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPLLL + ++E SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLLLVLIMVEFSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKM-ILDYF 353
           +S        L+  +AV+L FIG KM I+D++
Sbjct: 255 LSGVAERFSMLKYGLAVILVFIGIKMLIVDFY 286

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|Q92GA4|Y1219_RICCN Uncharacterized membrane protein RC1219 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC1219 PE=3 SV=1

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 152/242 (62%)

Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
           S+  SV    F +  A  FG+ V +  GA  A E++  +++E+++S+DN+FV  +IF++F
Sbjct: 29  SFKESVLFSLFYLVIACLFGIYVYYNTGADHAREYYTCFLIEKAMSLDNIFVISIIFQFF 88

Query: 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEED 232
           K+P  YQ+RVL +GI G I+FR  +I  G   + +F  +  + A IL+ +  K F     
Sbjct: 89  KIPWQYQHRVLFFGIIGVIIFRAVMIYGGIILINKFAWLLYIFAVILIATGIKTFYVSHK 148

Query: 233 DTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSI 292
             D+ +++I K+  + + +T   +GN+F   ++     TPL +++ +IE  D+ FA+DSI
Sbjct: 149 TFDIQNSYIYKSIIKNLNITPNLEGNKFIVKRNNKLYCTPLFISLVLIEAIDLVFAIDSI 208

Query: 293 PAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 352
           PA+F +T D +I+++SN+FAILGLR+LF  ++E +    Y++ S+A++L FI  K+ + +
Sbjct: 209 PAIFAITNDVYIIYTSNIFAILGLRALFFCLAEIVERFSYIKYSLALILIFISFKIFIHH 268

Query: 353 FV 354
           ++
Sbjct: 269 YI 270

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

>sp|Q1RKF1|Y082_RICBR Uncharacterized membrane protein RBE_0082 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0082 PE=3 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 153/242 (63%)

Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
           S+  S+    F  + +  FG+ + +  GA    E++  +++E+++S+DN+FV  +IF++F
Sbjct: 29  SFKQSLLFSLFYFTISCLFGIYIYYNMGADSTREYYTCFLIEKAMSLDNIFVISIIFQFF 88

Query: 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEED 232
           K+P  YQ+RVL +GI G I FR  +I  G   + +F  +  + A IL+ +  K F     
Sbjct: 89  KIPQKYQHRVLFFGIIGVIAFRAVMIYGGIILINKFSWLLYIFAVILIATGVKTFYVSHK 148

Query: 233 DTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSI 292
             D+ ++++ K+  +++ VT   +G++FF  ++     TPL +++ +IE  D+ FA+DSI
Sbjct: 149 TFDIQNSYLYKSIIKYLNVTPNLEGDKFFVTRNKKLYVTPLFISLILIEAIDLVFAIDSI 208

Query: 293 PAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 352
           PA+F +T D +I+++SN+FAILGLR+LF  ++E +    Y++ S+A++L FIG K+ + +
Sbjct: 209 PAIFAITNDAYIIYTSNIFAILGLRALFFCLAEIVERFSYIKYSLALILIFIGIKIFIHH 268

Query: 353 FV 354
           ++
Sbjct: 269 YI 270

Rickettsia bellii (strain RML369-C) (taxid: 336407)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
224068600	372	predicted protein [Populus trichocarpa]	0.952	0.908	0.718	1e-136
356536907	363	PREDICTED: uncharacterized membrane prot	0.935	0.914	0.677	1e-122
356548192	352	PREDICTED: uncharacterized membrane prot	0.909	0.917	0.668	1e-119
297807259	374	PDE149 [Arabidopsis lyrata subsp. lyrata	0.957	0.909	0.673	1e-119
225439789	389	PREDICTED: uncharacterized membrane prot	0.940	0.858	0.650	1e-117
18416778	384	TerC integral membrane domain-containing	0.971	0.898	0.655	1e-117
449448697	362	PREDICTED: uncharacterized membrane prot	0.909	0.892	0.627	1e-117
21592518	384	transmembrane transport protein-like pro	0.971	0.898	0.652	1e-117
9759380	344	unnamed protein product [Arabidopsis tha	0.830	0.857	0.726	1e-115
297741505	365	unnamed protein product [Vitis vinifera]	0.878	0.854	0.640	1e-113

>gi|224068600|ref|XP_002326155.1| predicted protein [Populus trichocarpa] gi|222833348|gb|EEE71825.1| predicted protein [Populus trichocarpa]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/355 (71%), Positives = 293/355 (82%), Gaps = 17/355 (4%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           M L SVI++    P     L L+ SP +       T  + F +   P+F SV   RRGQ 
Sbjct: 1   MRLTSVIHNNSIIP-----LSLKVSPAN------YTYSVQFSHPHFPSFNSVISKRRGQN 49

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHENDN---TSHSPTTVDDAERQIEGRESYTSS 117
           SP+ +CA+GTEQEDDLS SE  ++SSQ+ ++ +   TS +P +VD AE +++G  +Y +S
Sbjct: 50  SPI-SCARGTEQEDDLSPSEAVKTSSQTRDDVSKFITSTAPPSVDKAEEKVKG--NYKTS 106

Query: 118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVM 177
           +KTVA CV TAVAFG G+G  +G  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP+M
Sbjct: 107 IKTVALCVCTAVAFGFGIGLKDGVGKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPLM 166

Query: 178 YQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLS 237
           YQNRVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL LA ILL+SSFKLFA+EEDD+DLS
Sbjct: 167 YQNRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLFLATILLYSSFKLFATEEDDSDLS 226

Query: 238 DNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFG 297
           DNFIVKTCQRFIPVT+ YDGN+F T +DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFG
Sbjct: 227 DNFIVKTCQRFIPVTSNYDGNKFITREDGLWKATPLLLTVAVIELSDIAFAVDSIPAVFG 286

Query: 298 VTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 352
           VTRDPFIVFSSNLFAILGLRSL+TLISEGMADLEYLQPSIA+VLGFIGCKMILD+
Sbjct: 287 VTRDPFIVFSSNLFAILGLRSLYTLISEGMADLEYLQPSIAIVLGFIGCKMILDF 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536907|ref|XP_003536974.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/354 (67%), Positives = 278/354 (78%), Gaps = 22/354 (6%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV+++GV+ P   + +    +P      P   S LH   S   +F SV H R    
Sbjct: 1   MGLASVVHNGVRIPFNLEHI---HTP------PFRCSALHHPIS---SFCSVYHYRPPHR 48

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++     +    SEV R S+Q +++      SPT      ++  G E Y+SSV+
Sbjct: 49  FPLL-CSRRIGHHN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEDYSSSVR 99

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 100 TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVAYQ 159

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL+LIL+GTATLQRFEAVNL+LA ILLFSSFKLFASEED++DLSDN
Sbjct: 160 NRVLSYGIAGAVVFRLTLILIGTATLQRFEAVNLLLAAILLFSSFKLFASEEDESDLSDN 219

Query: 240 FIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 299
           F+VKTCQ+FIPVTTYYDGNRF TN DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVT
Sbjct: 220 FVVKTCQKFIPVTTYYDGNRFITNLDGVWKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 279

Query: 300 RDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353
           RDPF+VF+SNLFAILGLRSLF +ISEGM++L+YLQPSIA+VLGF+G KMILDYF
Sbjct: 280 RDPFVVFTSNLFAILGLRSLFLIISEGMSELKYLQPSIAIVLGFVGVKMILDYF 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548192|ref|XP_003542487.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/356 (66%), Positives = 274/356 (76%), Gaps = 33/356 (9%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV++  + AP                  P   S+LH   S   +F SV H R  + 
Sbjct: 1   MGLASVVH--IHAP------------------PFRCSVLHHPIS---SFCSVYHYRPPRR 37

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++    ++    SEV R S+Q +++      SPT      ++  G E Y SSV+
Sbjct: 38  FPLL-CSRRIGHDN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEGYNSSVR 88

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 89  TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVTYQ 148

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL++IL+GTATLQRFEAVNL+LA ILL+SS KLFASEED++DLSDN
Sbjct: 149 NRVLSYGIAGAVVFRLTIILIGTATLQRFEAVNLLLAAILLYSSSKLFASEEDESDLSDN 208

Query: 240 FIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 299
           F+VKTCQ+FIPVTTYYDGNRF TN DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVT
Sbjct: 209 FVVKTCQKFIPVTTYYDGNRFITNLDGVWKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 268

Query: 300 RDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFVL 355
           RDPF+VF+SNLFAILGLRSLF +ISEGM++L+YLQPSIAVVLGFIG KMILDYF L
Sbjct: 269 RDPFVVFTSNLFAILGLRSLFLIISEGMSELKYLQPSIAVVLGFIGVKMILDYFGL 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807259|ref|XP_002871513.1| PDE149 [Arabidopsis lyrata subsp. lyrata] gi|297317350|gb|EFH47772.1| PDE149 [Arabidopsis lyrata subsp. lyrata]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/355 (67%), Positives = 274/355 (77%), Gaps = 15/355 (4%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSH-NRRGQ 59
           M LASVI+ G+ AP K D + L         +P +             F  VS  NRR  
Sbjct: 1   MSLASVIHHGIFAPAKSDRIFL--------TIPVVPPDFRARGWTESRFSLVSAANRRLS 52

Query: 60  YSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTSSV 118
           + P +AC++  +QEDD  + E+       H+ND  + S ++VD       +  E+Y +S 
Sbjct: 53  HLPPIACSREIDQEDDKESREL-----LPHKNDENASSSSSVDSGGLNDYQQEETYKTSF 107

Query: 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMY 178
           KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP MY
Sbjct: 108 KTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPPMY 167

Query: 179 QNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSD 238
           QN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDLSD
Sbjct: 168 QNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDLSD 227

Query: 239 NFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGV 298
           NFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGV
Sbjct: 228 NFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAVFGV 287

Query: 299 TRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353
           TRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+F
Sbjct: 288 TRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVVLGFIGFKMILDFF 342

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439789|ref|XP_002276398.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Vitis vinifera]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/366 (65%), Positives = 273/366 (74%), Gaps = 32/366 (8%)

Query: 7   IYSGVQAPHKFDSLLLRFSPTSTS------QVPKLTSLL----------HFCNSQAPTFY 50
           IY GV+ P KFDS       TSTS      Q  K T+            HF     P   
Sbjct: 7   IYYGVRTPLKFDS-------TSTSTRVFSFQALKWTTTRSTTRLRFTFPHF-----PPLS 54

Query: 51  SVSHNRRGQYSPLLACAKGTEQ-EDDLSTSEVGRSSSQSHENDNTS--HSPTTVDDAERQ 107
           +V +    + SPL AC++ T+Q ED LSTSE  R S+      N +  H+  +  + E  
Sbjct: 55  AVRNAGGARCSPL-ACSRRTQQGEDGLSTSEGERISAPYDGLSNVAVPHNCISAGNPEEI 113

Query: 108 IEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVL 167
            +G E+Y SS++TVA  V  AV FG+GVGF +G  KASEFFAGY+LEQSLSVDNLFVFVL
Sbjct: 114 TQGPETYVSSIRTVALWVCMAVIFGVGVGFKDGVGKASEFFAGYLLEQSLSVDNLFVFVL 173

Query: 168 IFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 227
           IFKYF+VP MYQ RVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL+ A ILLFSSFKLF
Sbjct: 174 IFKYFQVPTMYQGRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLLFAAILLFSSFKLF 233

Query: 228 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAF 287
           A++ED+TDLS+NF+VKTCQ+FIPVT  YDGN F T QDG+ KATPLLLTV VIELSDIAF
Sbjct: 234 AADEDETDLSNNFVVKTCQKFIPVTANYDGNLFVTIQDGVWKATPLLLTVVVIELSDIAF 293

Query: 288 AVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCK 347
           AVDSIPAVFGVTRDPFIVF+SNLFAILGLRSL+TLISE M++LEYLQPSI VVLGFIGCK
Sbjct: 294 AVDSIPAVFGVTRDPFIVFTSNLFAILGLRSLYTLISESMSELEYLQPSIGVVLGFIGCK 353

Query: 348 MILDYF 353
           MI D+F
Sbjct: 354 MISDFF 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416778|ref|NP_568257.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana] gi|332004383|gb|AED91766.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/360 (65%), Positives = 276/360 (76%), Gaps = 15/360 (4%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
           M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct: 1   MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query: 58  GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEGRES 113
             + P +AC++G +QED+   S         H+ND  + +  +    +    +  +  E+
Sbjct: 57  LSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQEET 112

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFK
Sbjct: 113 YKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFK 172

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233
           VP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDD
Sbjct: 173 VPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDD 232

Query: 234 TDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIP 293
           TDLSDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIP
Sbjct: 233 TDLSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIP 292

Query: 294 AVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353
           AVFGVTRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+F
Sbjct: 293 AVFGVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVVLGFIGVKMILDFF 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448697|ref|XP_004142102.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Cucumis sativus]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/360 (62%), Positives = 266/360 (73%), Gaps = 37/360 (10%)

Query: 3   LASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHF--------CNSQAPTFYSVSH 54
           +AS+I++G+Q   K DS             PK++S LHF         ++  P F  V  
Sbjct: 1   MASIIHNGLQISSKLDS-----------PWPKVSSHLHFHPRAWVEAVHNHVPQFSPVIL 49

Query: 55  NRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESY 114
           N R     L+ C+   E+E D ST+E  R+SS                     IEG ES 
Sbjct: 50  NCRPSPRSLVRCSSRIEREGDPSTAEANRTSS-----------------VRGTIEGSESK 92

Query: 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKV 174
            SS++ VA CV+TAVAFG+GVG  +G  KASEFFAGY+LEQSLSVDNLFVFVLIFKYFKV
Sbjct: 93  VSSIRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKV 152

Query: 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS-EEDD 233
           P  YQNRVL+YGI+GAIVFRL++ILLG ATLQRFEAVNL+LA ILLFSSF+LFAS EEDD
Sbjct: 153 PTEYQNRVLTYGISGAIVFRLTIILLGAATLQRFEAVNLLLAAILLFSSFQLFASNEEDD 212

Query: 234 TDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIP 293
            DLSDNF+VKTCQ+ IPVT  YDG+RFFT Q+G++KATPLLLT+AVIELSDIAFAVDSIP
Sbjct: 213 GDLSDNFVVKTCQQLIPVTATYDGDRFFTLQEGVKKATPLLLTIAVIELSDIAFAVDSIP 272

Query: 294 AVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353
           AVFGVTRDPFIV +SN FAILGLRSLF L+++GM++LEYLQPSI VVL FIG KMILD+F
Sbjct: 273 AVFGVTRDPFIVITSNFFAILGLRSLFILVADGMSELEYLQPSIGVVLAFIGSKMILDFF 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592518|gb|AAM64468.1| transmembrane transport protein-like protein [Arabidopsis thaliana]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/360 (65%), Positives = 275/360 (76%), Gaps = 15/360 (4%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
           M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct: 1   MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query: 58  GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEGRES 113
             + P +AC++G +QED+   S         H+ND  + +  +    +    +  +  E+
Sbjct: 57  LSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQEET 112

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFK
Sbjct: 113 YKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFK 172

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233
           VP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDD
Sbjct: 173 VPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDD 232

Query: 234 TDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIP 293
           TDLSDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIP
Sbjct: 233 TDLSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIP 292

Query: 294 AVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353
           AVFGVTRDPFI  +SNLFAILGLRSL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+F
Sbjct: 293 AVFGVTRDPFIGLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVVLGFIGVKMILDFF 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759380|dbj|BAB10031.1| unnamed protein product [Arabidopsis thaliana]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/303 (72%), Positives = 252/303 (83%), Gaps = 8/303 (2%)

Query: 55  NRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEG 110
           NRR  + P +AC++G +QED+   S         H+ND  + +  +    +    +  + 
Sbjct: 14  NRRLSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQ 69

Query: 111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
            E+Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FK
Sbjct: 70  EETYKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFK 129

Query: 171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASE 230
           YFKVP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASE
Sbjct: 130 YFKVPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASE 189

Query: 231 EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVD 290
           EDDTDLSDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVD
Sbjct: 190 EDDTDLSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVD 249

Query: 291 SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL 350
           SIPAVFGVTRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQPSIAVVLGFIG KMIL
Sbjct: 250 SIPAVFGVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVVLGFIGVKMIL 309

Query: 351 DYF 353
           D+F
Sbjct: 310 DFF 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741505|emb|CBI32637.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/364 (64%), Positives = 264/364 (72%), Gaps = 52/364 (14%)

Query: 7   IYSGVQAPHKFDSLLLRFSPTSTS------QVPKLTSLL----------HFCNSQAPTFY 50
           IY GV+ P KFDS       TSTS      Q  K T+            HF     P   
Sbjct: 7   IYYGVRTPLKFDS-------TSTSTRVFSFQALKWTTTRSTTRLRFTFPHF-----PPLS 54

Query: 51  SVSHNRRGQYSPLLACAKGTEQ-EDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIE 109
           +V +    + SPL AC++ T+Q ED LSTS                       + E   +
Sbjct: 55  AVRNAGGARCSPL-ACSRRTQQGEDGLSTS----------------------GNPEEITQ 91

Query: 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIF 169
           G E+Y SS++TVA  V  AV FG+GVGF +G  KASEFFAGY+LEQSLSVDNLFVFVLIF
Sbjct: 92  GPETYVSSIRTVALWVCMAVIFGVGVGFKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIF 151

Query: 170 KYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS 229
           KYF+VP MYQ RVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL+ A ILLFSSFKLFA+
Sbjct: 152 KYFQVPTMYQGRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLLFAAILLFSSFKLFAA 211

Query: 230 EEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAV 289
           +ED+TDLS+NF+VKTCQ+FIPVT  YDGN F T QDG+ KATPLLLTV VIELSDIAFAV
Sbjct: 212 DEDETDLSNNFVVKTCQKFIPVTANYDGNLFVTIQDGVWKATPLLLTVVVIELSDIAFAV 271

Query: 290 DSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMI 349
           DSIPAVFGVTRDPFIVF+SNLFAILGLRSL+TLISE M++LEYLQPSI VVLGFIGCKMI
Sbjct: 272 DSIPAVFGVTRDPFIVFTSNLFAILGLRSLYTLISESMSELEYLQPSIGVVLGFIGCKMI 331

Query: 350 LDYF 353
            D+F
Sbjct: 332 SDFF 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2177053	384	PDE149 "PIGMENT DEFECTIVE 149"	0.980	0.906	0.672	2.4e-115
UNIPROTKB|Q74EV4	311	GSU0855 "Membrane protein, Ter	0.676	0.771	0.442	1.3e-50
TIGR_CMR|GSU_0855	311	GSU_0855 "membrane protein, Te	0.676	0.771	0.442	1.3e-50
UNIPROTKB|Q74CV1	314	GSU1570 "Membrane protein, Ter	0.670	0.757	0.438	1.1e-48
TIGR_CMR|GSU_1570	314	GSU_1570 "membrane protein, Te	0.670	0.757	0.438	1.1e-48
UNIPROTKB|P42601	321	alx "predicted membrane-bound	0.591	0.654	0.436	9.1e-45
UNIPROTKB|Q3ZA17	321	DET0184 "Membrane protein, Ter	0.639	0.707	0.387	9.3e-43
TIGR_CMR|DET_0184	321	DET_0184 "membrane protein, Te	0.639	0.707	0.387	9.3e-43
UNIPROTKB|Q8EG61	325	SO_1747 "Tellurium ion resista	0.664	0.726	0.403	1.5e-42
TIGR_CMR|SO_1747	325	SO_1747 "membrane protein, put	0.664	0.726	0.403	1.5e-42

TAIR|locus:2177053 PDE149 "PIGMENT DEFECTIVE 149" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 240/357 (67%), Positives = 279/357 (78%)

Query:     1 MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
             M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct:     1 MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query:    58 GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTS 116
               + P +AC++G +QED+   S       ++ EN  TS S ++VD    +  +  E+Y +
Sbjct:    57 LSHLPPIACSRGIDQEDEEKESRE-LLPHKNDENATTSRSSSSVDSGGLKDYQQEETYKT 115

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP+
Sbjct:   116 SFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPL 175

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDL 236
             MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDL
Sbjct:   176 MYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDL 235

Query:   237 SDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVF 296
             SDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIPAVF
Sbjct:   236 SDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAVF 295

Query:   297 GVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353
             GVTRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+F
Sbjct:   296 GVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVVLGFIGVKMILDFF 352

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

UNIPROTKB|Q74EV4 GSU0855 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 108/244 (44%), Positives = 163/244 (66%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK+
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFKM 147

Query:   227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIA 286
                 E+  +   N IV+  ++ +P+T     +RFF  + G+R ATPL L + ++E SD+ 
Sbjct:   148 AFGGEEKIEPEKNPIVRLVRKLVPITKRIRDDRFFIKKGGVRAATPLFLALVMVESSDLI 207

Query:   287 FAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGC 346
             FAVDSIPAV  V+RDPFIV++SN+FAI+GLRSL+ L++  M    YL+  ++V+L ++G 
Sbjct:   208 FAVDSIPAVLAVSRDPFIVYTSNVFAIMGLRSLYYLLANVMEMFVYLKLGVSVILAYVGV 267

Query:   347 KMIL 350
             KM+L
Sbjct:   268 KMLL 271

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0855 GSU_0855 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 108/244 (44%), Positives = 163/244 (66%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK+
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFKM 147

Query:   227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIA 286
                 E+  +   N IV+  ++ +P+T     +RFF  + G+R ATPL L + ++E SD+ 
Sbjct:   148 AFGGEEKIEPEKNPIVRLVRKLVPITKRIRDDRFFIKKGGVRAATPLFLALVMVESSDLI 207

Query:   287 FAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGC 346
             FAVDSIPAV  V+RDPFIV++SN+FAI+GLRSL+ L++  M    YL+  ++V+L ++G 
Sbjct:   208 FAVDSIPAVLAVSRDPFIVYTSNVFAIMGLRSLYYLLANVMEMFVYLKLGVSVILAYVGV 267

Query:   347 KMIL 350
             KM+L
Sbjct:   268 KMLL 271

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q74CV1 GSU1570 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 106/242 (43%), Positives = 160/242 (66%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL-F-A 228
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K+ F A
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASKMAFGA 150

Query:   229 SEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFA 288
             SEE D D   N +V+  ++ +P+T    G+ FFT + G+  A+PL + + V+E SD+ FA
Sbjct:   151 SEEMDPD--KNLMVRLARKVLPMTRKIRGDWFFTRRLGLWVASPLFMVLLVVESSDLVFA 208

Query:   289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKM 348
             +DSIPA+F +T DPFIV +SN+FAI+GLR+L+ L++E M    YL+  I+ +L F+G KM
Sbjct:   209 LDSIPAIFAITLDPFIVLTSNVFAIMGLRALYFLLAEVMGMFAYLKYGISFILAFVGIKM 268

Query:   349 IL 350
             IL
Sbjct:   269 IL 270

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1570 GSU_1570 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 106/242 (43%), Positives = 160/242 (66%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL-F-A 228
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K+ F A
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASKMAFGA 150

Query:   229 SEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFA 288
             SEE D D   N +V+  ++ +P+T    G+ FFT + G+  A+PL + + V+E SD+ FA
Sbjct:   151 SEEMDPD--KNLMVRLARKVLPMTRKIRGDWFFTRRLGLWVASPLFMVLLVVESSDLVFA 208

Query:   289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKM 348
             +DSIPA+F +T DPFIV +SN+FAI+GLR+L+ L++E M    YL+  I+ +L F+G KM
Sbjct:   209 LDSIPAIFAITLDPFIVLTSNVFAIMGLRALYFLLAEVMGMFAYLKYGISFILAFVGIKM 268

Query:   349 IL 350
             IL
Sbjct:   269 IL 270

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|P42601 alx "predicted membrane-bound redox modulator that is induced by high pH" [Escherichia coli K-12 (taxid:83333)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 93/213 (43%), Positives = 145/213 (68%)

Query:   143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
             +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct:    75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query:   203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
               + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct:   135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query:   263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
              ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct:   195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query:   323 ISEGMAD-LEYLQPSIAVVLGFIGCKM-ILDYF 353
             ++ G+A+    L+  +AV+L FIG KM I+D++
Sbjct:   255 LA-GVAERFSMLKYGLAVILVFIGIKMLIVDFY 286

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q3ZA17 DET0184 "Membrane protein, TerC family" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 88/227 (38%), Positives = 137/227 (60%)

Query:   128 AVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI 187
             A+ FG  + F  G+     + +GYI+E SLSVDNLFVF++IF YF +   YQ++VL +GI
Sbjct:    48 ALIFGGLIYFSMGSEFGLNYLSGYIIELSLSVDNLFVFIMIFSYFCIKREYQHKVLFWGI 107

Query:   188 AGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQR 247
              GAI+ R   I  G   ++    V  +    L+++  ++   +  +     N +V    R
Sbjct:   108 LGAIIMRAVFIAAGITLIENLSWVLYIFGAFLIYTGIRMVKDQNQEIHPDKNPLVNFVCR 167

Query:   248 FIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS 307
              +P+T    G+ FF  ++G + ATPL+L +  IE  D+ FA+DSIPAV  +T DPFIVF+
Sbjct:   168 ILPMTNKLHGDHFFIKENGRKLATPLILVLVTIEAMDLVFAIDSIPAVMAITLDPFIVFT 227

Query:   308 SNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFV 354
             SN+FA++GLR+++  +S  +  L YL   +A +L F+G KM++  FV
Sbjct:   228 SNIFAVMGLRAMYMALSGIIQKLHYLHYGLAAILSFLGIKMLISEFV 274

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0184 DET_0184 "membrane protein, TerC family" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 88/227 (38%), Positives = 137/227 (60%)

Query:   128 AVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI 187
             A+ FG  + F  G+     + +GYI+E SLSVDNLFVF++IF YF +   YQ++VL +GI
Sbjct:    48 ALIFGGLIYFSMGSEFGLNYLSGYIIELSLSVDNLFVFIMIFSYFCIKREYQHKVLFWGI 107

Query:   188 AGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQR 247
              GAI+ R   I  G   ++    V  +    L+++  ++   +  +     N +V    R
Sbjct:   108 LGAIIMRAVFIAAGITLIENLSWVLYIFGAFLIYTGIRMVKDQNQEIHPDKNPLVNFVCR 167

Query:   248 FIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS 307
              +P+T    G+ FF  ++G + ATPL+L +  IE  D+ FA+DSIPAV  +T DPFIVF+
Sbjct:   168 ILPMTNKLHGDHFFIKENGRKLATPLILVLVTIEAMDLVFAIDSIPAVMAITLDPFIVFT 227

Query:   308 SNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFV 354
             SN+FA++GLR+++  +S  +  L YL   +A +L F+G KM++  FV
Sbjct:   228 SNIFAVMGLRAMYMALSGIIQKLHYLHYGLAAILSFLGIKMLISEFV 274

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q8EG61 SO_1747 "Tellurium ion resistance family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 98/243 (40%), Positives = 155/243 (63%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKMLFSNDEHGD 164

Query:   236 LSDNFIVKTCQRFIPVTTYYDGNRFFTNQDG--MRK---ATPLLLTVAVIELSDIAFAVD 290
             + DN   K  +  +  T      +F+   +   + K   ATPL L + ++E +D+ FAVD
Sbjct:   165 IQDNKFYKWLRSKMRFTPSLHQEKFWVRGEDHQLSKGWWATPLFLALILVETADLVFAVD 224

Query:   291 SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL 350
             SIPA+F +T+DPFIV++SN+FAILGLR+L+  ++  +   EYL+ +++VVL FIG K+ L
Sbjct:   225 SIPAIFAITQDPFIVYTSNIFAILGLRALYFALAAMVHRFEYLKYALSVVLVFIGVKVGL 284

Query:   351 DYF 353
              YF
Sbjct:   285 VYF 287

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1747 SO_1747 "membrane protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 98/243 (40%), Positives = 155/243 (63%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKMLFSNDEHGD 164

Query:   236 LSDNFIVKTCQRFIPVTTYYDGNRFFTNQDG--MRK---ATPLLLTVAVIELSDIAFAVD 290
             + DN   K  +  +  T      +F+   +   + K   ATPL L + ++E +D+ FAVD
Sbjct:   165 IQDNKFYKWLRSKMRFTPSLHQEKFWVRGEDHQLSKGWWATPLFLALILVETADLVFAVD 224

Query:   291 SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL 350
             SIPA+F +T+DPFIV++SN+FAILGLR+L+  ++  +   EYL+ +++VVL FIG K+ L
Sbjct:   225 SIPAIFAITQDPFIVYTSNIFAILGLRALYFALAAMVHRFEYLKYALSVVLVFIGVKVGL 284

Query:   351 DYF 353
              YF
Sbjct:   285 VYF 287

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_601243.1	annotation not avaliable (374 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_900032.1	annotation not avaliable (176 aa)	•								0.431

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
TIGR03718	302	TIGR03718, R_switched_Alx, integral membrane prote	4e-99
pfam03741	184	pfam03741, TerC, Integral membrane protein TerC fa	4e-58
COG0861	254	COG0861, TerC, Membrane protein TerC, possibly inv	2e-45
TIGR03716	215	TIGR03716, R_switched_YkoY, integral membrane prot	1e-16

>gnl|CDD|234327 TIGR03718, R_switched_Alx, integral membrane protein, TerC family

 Score =  295 bits (757), Expect = 4e-99
 Identities = 112/237 (47%), Positives = 158/237 (66%)

Query: 117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
           ++   A  VS A+ FG GV F  G   A EF  GY++E+SLSVDNLFVF+LIF YF VP 
Sbjct: 35  ALLWSAVWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPR 94

Query: 177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDL 236
            YQ+RVL +GI GA+V R   I  G A +++F  V  +    LL++  K+    +++ D 
Sbjct: 95  EYQHRVLFWGILGALVLRAIFIAAGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDP 154

Query: 237 SDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVF 296
            +N +V+  +R +PVT  Y G+RFF  ++G R ATPL L + ++E +D+ FAVDSIPA+F
Sbjct: 155 ENNPLVRLVRRVLPVTDKYHGDRFFVRENGKRYATPLFLVLVLVETTDLIFAVDSIPAIF 214

Query: 297 GVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353
            VT+DPFIVF+SN+FAILGLR+L+ L++  +    YL+  +AV+L FIG KM+L   
Sbjct: 215 AVTQDPFIVFTSNIFAILGLRALYFLLAGLLERFHYLKYGLAVILVFIGVKMLLHAT 271

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader. Length = 302

>gnl|CDD|217707 pfam03741, TerC, Integral membrane protein TerC family

 Score =  186 bits (474), Expect = 4e-58
 Identities = 84/205 (40%), Positives = 124/205 (60%), Gaps = 21/205 (10%)

Query: 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207
              Y+LE SLSVDN FV  LIF+  K+P   Q + L +GI GA+V R+ LILLG+A L+ 
Sbjct: 1   LTLYLLEISLSVDNAFVIALIFR--KLPPEQQKKALFWGIIGALVLRIILILLGSALLEL 58

Query: 208 FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGM 267
           F+ + L+    LL+++ KL    E+D +  +N IV+  ++ +PVT+              
Sbjct: 59  FDWILLIGGAFLLYTAIKLLRENEEDDE--ENKIVRELKKVLPVTSSS------------ 104

Query: 268 RKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGM 327
                L L V  IEL+D+ F++DS+PA  G+T DPFIV + N+FAILGLR L  L+++ +
Sbjct: 105 -----LWLAVIQIELADLVFSLDSVPAAVGITDDPFIVITGNIFAILGLRFLAFLLAKLI 159

Query: 328 ADLEYLQPSIAVVLGFIGCKMILDY 352
               YL+   A +LGFIG K++L+ 
Sbjct: 160 ERFPYLKYLAAAILGFIGVKLLLEG 184

This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions. Length = 184

>gnl|CDD|223930 COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

 Score =  155 bits (395), Expect = 2e-45
 Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 13/206 (6%)

Query: 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205
                 +LE  L +DN  V  ++      P   + + L  G+AGA+V R+ L+   +  L
Sbjct: 19  ALLTLILLEIVLGIDNAIVIAILASKL--PPKQRKKALFIGLAGALVLRIILLASISWLL 76

Query: 206 QRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQD 265
              + +  +    LL+   KL          +             +    +G  FF N  
Sbjct: 77  TLTQPLLYIFGLYLLWRDIKLLLGGLFLLFKA----------TKELHERLEGEEFFVNGK 126

Query: 266 GMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISE 325
             +KATP    +  IEL+D+ F++DS+ A  G+   PF++ ++ +FAIL +R    L++ 
Sbjct: 127 L-KKATPFWGAIIQIELADLVFSLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLAR 185

Query: 326 GMADLEYLQPSIAVVLGFIGCKMILD 351
            +     L+    V+L FIG K+IL+
Sbjct: 186 LLERHPTLKYLALVILLFIGVKLILE 211

Length = 254

>gnl|CDD|234326 TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 28/199 (14%)

Query: 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 211
           ILE  LS DN  V  ++ K+  +P   + + L YG+ GA VFR   + L +  L +F  +
Sbjct: 2   ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLAS-FLIKFWWI 58

Query: 212 NLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKAT 271
             + A  LL+ + K F  ++   +  +    K    F                       
Sbjct: 59  KAIGALYLLYLAIKHFRKKKKGKEDEEAEKKKAHSGFWR--------------------- 97

Query: 272 PLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLE 331
               TV  +EL DIAF+VDSI A   ++   ++VF   +  IL +R   T+  + +    
Sbjct: 98  ----TVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGIIGILIMRFAATIFVKLLERFP 153

Query: 332 YLQPSIAVVLGFIGCKMIL 350
            L+ +  +++G+IG K++L
Sbjct: 154 ELETAAFLLIGWIGVKLLL 172

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	100.0
COG0861	254	TerC Membrane protein TerC, possibly involved in t	100.0
PF03741	183	TerC: Integral membrane protein TerC family; Inter	100.0
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	100.0
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	100.0
PRK14013	338	hypothetical protein; Provisional	100.0
COG2899	346	Uncharacterized protein conserved in bacteria [Fun	99.97
PF04332	294	DUF475: Protein of unknown function (DUF475); Inte	99.94
PF01914	203	MarC: MarC family integral membrane protein; Inter	97.72
PRK10995	221	inner membrane protein; Provisional	97.62
COG1971	190	Predicted membrane protein [Function unknown]	97.62
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	97.54
PRK10739	197	putative antibiotic transporter; Provisional	97.52
PRK11469	188	hypothetical protein; Provisional	97.39
PRK11111	214	hypothetical protein; Provisional	97.29
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	97.24
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	97.15
PF03741	183	TerC: Integral membrane protein TerC family; Inter	97.1
COG0861	254	TerC Membrane protein TerC, possibly involved in t	96.99
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	96.72
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	96.7
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	96.67
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	96.49
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	96.39
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	95.82
PRK09304	207	arginine exporter protein; Provisional	95.74
COG2119	190	Predicted membrane protein [Function unknown]	95.68
PRK10958	212	leucine export protein LeuE; Provisional	95.68
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	95.3
PRK10229	206	threonine efflux system; Provisional	94.79
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	94.49
TIGR00948	177	2a75 L-lysine exporter.	92.55
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	90.81
PRK11469	188	hypothetical protein; Provisional	86.53
COG1279	202	Lysine efflux permease [General function predictio	84.7
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	81.63

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=100.00  E-value=3e-72  Score=542.39  Aligned_cols=245  Identities=47%  Similarity=0.799  Sum_probs=239.4

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHH
Q 018460          110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG  189 (355)
Q Consensus       110 ~~~~~k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~g  189 (355)
                      |+.+.|||..||++|+++|++||+++|++.|++.+.||+|+|++|++||+||++||++++++|++|+++|||+|+||++|
T Consensus        28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g  107 (302)
T TIGR03718        28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG  107 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccCCCCcchhhHHHHhhhccccccccCCCceeEecCCccc
Q 018460          190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRK  269 (355)
Q Consensus       190 AivlRiifi~~g~~Ll~~f~~I~liGG~fLl~~a~k~l~~~~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~  269 (355)
                      |++||++|+++|++++++|+|++++||+||+|+|+|++++++||+|+++|+.+|+++|++|++++|+|++|+++++|++.
T Consensus       108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~  187 (302)
T TIGR03718       108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRFFVRENGKRY  187 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCCceeeeecCcee
Confidence            99999999999999999999999999999999999999987777777889999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHhhcccHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHh
Q 018460          270 ATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMI  349 (355)
Q Consensus       270 aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT~d~~IV~~g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMi  349 (355)
                      +||++.++++||++|++||+|||||++|+|+||+++++||+||++++|++|+++++++||||||+|+++++|+|+|+||+
T Consensus       188 ~tpl~~vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf~~L~~~~a~iL~fIGvkml  267 (302)
T TIGR03718       188 ATPLFLVLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERFHYLKYGLAVILVFIGVKML  267 (302)
T ss_pred             cCcHHHHHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcC
Q 018460          350 LDYFV  354 (355)
Q Consensus       350 l~~fg  354 (355)
                      ++++|
T Consensus       268 l~~~~  272 (302)
T TIGR03718       268 LHATD  272 (302)
T ss_pred             HhhcC
Confidence            99765

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-50  Score=381.86  Aligned_cols=202  Identities=27%  Similarity=0.411  Sum_probs=184.5

Q ss_pred             HHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 018460          137 FIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLA  216 (355)
Q Consensus       137 ~~~g~~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~I~liGG  216 (355)
                      +...++.|.+++|++++|++||+||++|+++++++  +|++||+|+++||+.+|+++|+++++.++|+++.++|++++||
T Consensus        10 ~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~l~~~fg   87 (254)
T COG0861          10 WLADPAAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQPLLYIFG   87 (254)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            44567778899999999999999999999999997  8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhccCCCCcchhhHHHHhhhccccccccCCCceeEecCCcc-ccchHHHHHHHHHHHHHHhhcccHHHH
Q 018460          217 GILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR-KATPLLLTVAVIELSDIAFAVDSIPAV  295 (355)
Q Consensus       217 ~fLl~~a~k~l~~~~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~-~aTpl~~avi~Iel~DlvFSlDSV~Aa  295 (355)
                      ++|+|+++|++.+++++.       .|+.++..   ++++|+++++  +++. ..||+|.++.+||++|++||+|||||+
T Consensus        88 ~~L~~~~~~ll~~~~~~~-------~k~~~~~~---~~~~~~~~~~--~~~~~~~~~f~~ai~~I~i~D~vFSlDSV~Aa  155 (254)
T COG0861          88 LYLLWRDIKLLLGGLFLL-------FKATKELH---ERLEGEEFFV--NGKLKKATPFWGAIIQIELADLVFSLDSVIAA  155 (254)
T ss_pred             HHHHHHHHHHHhcchhHH-------HHHHHHHh---hhhccccccc--cccccccCcHHHHHHHHHHHHHHHhhhHHHHH
Confidence            999999999999765433       23334433   6788888877  3333 779999999999999999999999999


Q ss_pred             hHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhh
Q 018460          296 FGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY  352 (355)
Q Consensus       296 ~aiT~d~~IV~~g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~  352 (355)
                      +|+|+|+++|++|+++|+++||++|+++++++||||+++|+++.+|+|||+||++++
T Consensus       156 ~g~~~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l~~~~~~iL~~IG~kli~~~  212 (254)
T COG0861         156 VGMAGHPFVMVTAVIFAILVMRFAAFLLARLLERHPTLKYLALVILLFIGVKLILEG  212 (254)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999998

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=100.00  E-value=4.2e-49  Score=357.77  Aligned_cols=183  Identities=38%  Similarity=0.594  Sum_probs=164.3

Q ss_pred             HHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 018460          148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF  227 (355)
Q Consensus       148 ltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~I~liGG~fLl~~a~k~l  227 (355)
                      +|++++|++||+||++|+++++++  +|+++|+|+++||+.+|+++|++|+++++++++.++|++++||+||+|+|+|++
T Consensus         1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~   78 (183)
T PF03741_consen    1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL   78 (183)
T ss_pred             CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999997  999999999999999999999999999999998889999999999999999999


Q ss_pred             hhccCCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHHHHHHHHHhhcccHHHHhHhcCCchhHHH
Q 018460          228 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS  307 (355)
Q Consensus       228 ~~~~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT~d~~IV~~  307 (355)
                      ++++| +|+ ++...+..++..|                 ....++|.++.+||++|++||+|||+|++|+|+|++++++
T Consensus        79 ~~~~~-~d~-~~~~~~~~~~~~~-----------------~~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it~~~~iv~~  139 (183)
T PF03741_consen   79 HEERD-EDP-ENAEVEEEKKFFP-----------------VSKSSLWLAVIQIELADLVFSLDSVLAAVGITDDFFIVIT  139 (183)
T ss_pred             Hhccc-ccc-chhhhhhhhcccc-----------------chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Confidence            98762 333 3433333322211                 1234699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhh
Q 018460          308 SNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD  351 (355)
Q Consensus       308 g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~  351 (355)
                      |+++|+++||++|+.+++++||||+++++++.+|+|+|+||++|
T Consensus       140 g~i~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~ig~~li~~  183 (183)
T PF03741_consen  140 GNIISILLMRFLSFLLAKLLERFPYLKYLAAAILGFIGVKLILE  183 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999975

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=100.00  E-value=1.2e-47  Score=356.43  Aligned_cols=173  Identities=29%  Similarity=0.450  Sum_probs=157.3

Q ss_pred             HHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcc
Q 018460          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE  231 (355)
Q Consensus       152 lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~I~liGG~fLl~~a~k~l~~~~  231 (355)
                      ++|++||+||++|+++++++  +|++||+|+++||++||+++|++|++++++++ +++|++++||+||+|+++|++++++
T Consensus         2 ~lE~vLS~DN~~via~~~~~--LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll-~~~~l~~iGG~~Ll~~~~k~l~~~~   78 (215)
T TIGR03716         2 ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLASFLI-KFWWIKAIGALYLLYLAIKHFRKKK   78 (215)
T ss_pred             chhHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            68999999999999999996  99999999999999999999999999999999 5679999999999999999999765


Q ss_pred             CCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHHHHHHHHHhhcccHHHHhHhcCCchhHHHHHHH
Q 018460          232 DDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLF  311 (355)
Q Consensus       232 ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT~d~~IV~~g~i~  311 (355)
                      ++++.+++.                         .++..+.+|.++.+||++|++||+|||+|++|+|+|++++++|+++
T Consensus        79 ~~~~~~~~~-------------------------~~~~~~~f~~av~~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~  133 (215)
T TIGR03716        79 KGKEDEEAE-------------------------KKKAHSGFWRTVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGII  133 (215)
T ss_pred             ccccccccc-------------------------cccccchHHHHHHHHHHHHHHHHhhhHHHHHHhccChHHHHHHHHH
Confidence            443322211                         0111356899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhh
Q 018460          312 AILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY  352 (355)
Q Consensus       312 AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~  352 (355)
                      |+++||++|+.+++++||||+++|+++.+|+|+|+||++++
T Consensus       134 sIl~lr~~s~~l~~li~r~p~L~~~~~~iL~~ig~kLil~~  174 (215)
T TIGR03716       134 GILIMRFAATIFVKLLERFPELETAAFLLIGWIGVKLLLET  174 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999975

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=100.00  E-value=7.9e-43  Score=315.19  Aligned_cols=174  Identities=24%  Similarity=0.319  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 018460          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL  226 (355)
Q Consensus       147 fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~I~liGG~fLl~~a~k~  226 (355)
                      +++++++|.+||+||++|+++++++  +|+++|||++.||+.+|+++|++|+++|.++++ ++|+++.||++|+|+|+|+
T Consensus         2 ~~~li~le~vLs~DN~~vi~~~t~~--lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m   78 (176)
T TIGR03717         2 LLQIIAIDLVLGGDNAVVIALAARN--LPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL   78 (176)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999875  999999999999999999999999999999996 7999999999999999999


Q ss_pred             hhhccCCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHHHHHHHHHhhcccHHHHhHhcC-CchhH
Q 018460          227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTR-DPFIV  305 (355)
Q Consensus       227 l~~~~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT~-d~~IV  305 (355)
                      +++++++++.++                             ...+|+|.++++||++|++||+|||||++|+|+ |.+++
T Consensus        79 l~~~~~~~~~~~-----------------------------~~~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~~~~~~li  129 (176)
T TIGR03717        79 LLEEEEEQGGDV-----------------------------KGSTTLWAAIKTIVIADAVMSLDNVLAVAGAAHGHLGLL  129 (176)
T ss_pred             Hhcccccccccc-----------------------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            987654433211                             124799999999999999999999999999997 67799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhh
Q 018460          306 FSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY  352 (355)
Q Consensus       306 ~~g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~  352 (355)
                      ++|.++|++.|++.+..++++++|||+++|+++.+|+|+|+||+++|
T Consensus       130 ~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~ig~kl~~~d  176 (176)
T TIGR03717       130 IFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGYVAGEMIVTD  176 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999865

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PRK14013 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-41  Score=330.70  Aligned_cols=231  Identities=21%  Similarity=0.252  Sum_probs=191.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HH
Q 018460          115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VF  193 (355)
Q Consensus       115 k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vl  193 (355)
                      .+.|+||++++.++++.+.++++   .+.....+++.++|++||+||++|+|.+.++  +|++||+|+|+||+++|+ +|
T Consensus         3 ~~~f~~s~~~t~~~l~~~~~~g~---~~~~~~~~~L~vLEisLsfDNaIvnA~vl~~--m~~~wq~~fl~~Gi~iAvFgm   77 (338)
T PRK14013          3 LRYFRWSFIVTVIGLVLAAWLGG---LSALFIVAILAVLEISLSFDNAVVNATVLKR--MSPKWQKRFLTWGILIAVFGM   77 (338)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999987643   5666678889999999999999999999996  999999999999999998 99


Q ss_pred             HHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhhccCCCCcchhhHHHHhhhcc
Q 018460          194 RLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFI  249 (355)
Q Consensus       194 Riifi~~g~~Ll~~------------------------f~~I~liGG~fLl~~a~k~l~~~~ee~d~~~~~i~r~~~k~~  249 (355)
                      |++|+++++|+.+.                        .+.+..+||+||++.+.+++.++|+|.+|-. +++|.++|.-
T Consensus        78 Rlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~~Wl~-~iE~~~~~~g  156 (338)
T PRK14013         78 RLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDVHWLG-WIERPLAKLG  156 (338)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCccchh-HHHHHHHHhc
Confidence            99999999999764                        2358899999999999999998888877742 3444444332


Q ss_pred             cc---------------ccccCCC-----------------------cee-Ee-cC-CccccchHHHHHHHHHHHHHHhh
Q 018460          250 PV---------------TTYYDGN-----------------------RFF-TN-QD-GMRKATPLLLTVAVIELSDIAFA  288 (355)
Q Consensus       250 pv---------------~~~~~g~-----------------------~f~-~~-~~-g~~~aTpl~~avi~Iel~DlvFS  288 (355)
                      .+               ....+.+                       +++ .. ++ .+...+.-+..++++|++|++||
T Consensus       157 ~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~a~~~G~~~y~~v~~~~~~~~~~~~~~~~~~~k~g~~~fl~lE~~D~~FS  236 (338)
T PRK14013        157 KLDGISVIVALVLLLIFSLLLPADEALTVLIAGLLGLLTYLIVEGLGGLFEEEEEDAMTAVGKAGLGGFLYLEVLDASFS  236 (338)
T ss_pred             CccchHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            22               0001100                       111 00 01 11234567899999999999999


Q ss_pred             cccHHHHhHhcCCchhHHHHHHHHHHHHHHH--HHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhh
Q 018460          289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSL--FTLISEGMADLEYLQPSIAVVLGFIGCKMILD  351 (355)
Q Consensus       289 lDSV~Aa~aiT~d~~IV~~g~i~AIl~LRsl--~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~  351 (355)
                      +|||||++|+|+|++++++||++|++++|++  |++..+.++||+|||++++++++++|+||+++
T Consensus       237 ~DsV~aafAiT~d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~lgvkmll~  301 (338)
T PRK14013        237 FDGVIGAFAITNDIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLS  301 (338)
T ss_pred             hccchhheeecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999  99999999999999999999999999999986

>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.97  E-value=1.7e-32  Score=261.81  Aligned_cols=236  Identities=21%  Similarity=0.270  Sum_probs=189.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHH---HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHH
Q 018460          114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFA---GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA  190 (355)
Q Consensus       114 ~k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~~flt---l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gA  190 (355)
                      ..+-|+||+..+.+|++.+.|.+|.+|...|..++-   +.++|+|||.||++|+|-+.+.  +.+.||||.|+|||++|
T Consensus         3 ~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~--MS~~Wqk~FLT~GIlIA   80 (346)
T COG2899           3 AFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILKD--MSPFWQKRFLTWGILIA   80 (346)
T ss_pred             hHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHHh--ccHHHHHHHHHHHHHHH
Confidence            356789999999999999999998877766655444   5689999999999999999997  89999999999999999


Q ss_pred             H-HHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhhccCCCCcchhhHHHHh
Q 018460          191 I-VFRLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTC  245 (355)
Q Consensus       191 i-vlRiifi~~g~~Ll~~------------------------f~~I~liGG~fLl~~a~k~l~~~~ee~d~~~~~i~r~~  245 (355)
                      + .||++|+++++++-..                        .+.|..+||.||++.+.++++|.|+|.+|-+ ++++-+
T Consensus        81 VFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~hWl~-~iE~~~  159 (346)
T COG2899          81 VFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDVHWLK-WIERPL  159 (346)
T ss_pred             HHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHhcCchhhhhhhHHHHHHHHHHhcCccccchhhh-hHHHHH
Confidence            7 8999999999998654                        3458899999999999999999777776642 333333


Q ss_pred             hhcccc---------------c--cccCCC--ceeE--------------------ecC-C-ccccchHHHHHHHHHHHH
Q 018460          246 QRFIPV---------------T--TYYDGN--RFFT--------------------NQD-G-MRKATPLLLTVAVIELSD  284 (355)
Q Consensus       246 ~k~~pv---------------~--~~~~g~--~f~~--------------------~~~-g-~~~aTpl~~avi~Iel~D  284 (355)
                      .|+-..               +  -..+++  .+..                    ..+ . .......+.+++++|+.|
T Consensus       160 arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~Agl~GlltyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVLD  239 (346)
T COG2899         160 ARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVLD  239 (346)
T ss_pred             HHhcCCCCchhHHHHHHHHHHHHHhcCccccceehHHHHHHHHHHHHHHHhhhHhhcCHHHHhhhhhcchhHHHHHHHHh
Confidence            322221               0  011111  1111                    000 0 112245788999999999


Q ss_pred             HHhhcccHHHHhHhcCCchhHHHHHHHHHHHHHHH--HHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhh
Q 018460          285 IAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSL--FTLISEGMADLEYLQPSIAVVLGFIGCKMILDY  352 (355)
Q Consensus       285 lvFSlDSV~Aa~aiT~d~~IV~~g~i~AIl~LRsl--~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~  352 (355)
                      ..||+|+|++|||+|+|++|+..|+.++.+.+|++  |-+-.+.+++|.|||||+.+.++..++.|+++-
T Consensus       240 AsFSFDGViGAFAiT~d~vIIalGLgIGAmfVRSiTi~LV~kgTL~~y~yLEHGAhyAI~~Laviml~s~  309 (346)
T COG2899         240 ASFSFDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLST  309 (346)
T ss_pred             hhccccceeeeeeeccCchhheeccchhheeeeeeEEEEEecCcHHHHHHHhcchHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999  555569999999999999999999999998764

>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains

Probab=99.94  E-value=9e-28  Score=230.57  Aligned_cols=192  Identities=20%  Similarity=0.287  Sum_probs=154.2

Q ss_pred             hhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh------------------------hhHHHH
Q 018460          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR------------------------FEAVNL  213 (355)
Q Consensus       159 vDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~------------------------f~~I~l  213 (355)
                      .||++|+|-+.+.  +.+.|||+.|+|||++|+ +||++|+.+++++.+.                        .+.+..
T Consensus         1 FDNAVVNA~vLk~--Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa   78 (294)
T PF04332_consen    1 FDNAVVNATVLKR--MSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA   78 (294)
T ss_pred             CCchhhhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence            5999999999997  889999999999999998 8999999999999764                        245788


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCcchhhHHHHhhhcccc---------------------ccccCCC--------------
Q 018460          214 VLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPV---------------------TTYYDGN--------------  258 (355)
Q Consensus       214 iGG~fLl~~a~k~l~~~~ee~d~~~~~i~r~~~k~~pv---------------------~~~~~g~--------------  258 (355)
                      +||+||++.+.+.+.++++ .+|- .+++|.+.|.-++                     .++....              
T Consensus        79 FGG~FLlmvfL~f~f~~~k-~~Wl-~~iE~~l~~~g~~~~~~~~v~l~~l~~~~~~l~~~~~~~~~~l~agi~G~~~f~~  156 (294)
T PF04332_consen   79 FGGMFLLMVFLDFFFDEEK-VHWL-RWIERPLAKLGKLDAISVVVALLALLIIAVFLAASADEAPTVLLAGILGLVTFLI  156 (294)
T ss_pred             HhHHHHHHHHHheeecCCc-ceee-hHHHHHHHHcCCcccchhHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Confidence            9999999999999998876 6553 2333333332221                     1110000              


Q ss_pred             -----ceeEecCC-----ccccchHHHHHHHHHHHHHHhhcccHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHH--HH
Q 018460          259 -----RFFTNQDG-----MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLIS--EG  326 (355)
Q Consensus       259 -----~f~~~~~g-----~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT~d~~IV~~g~i~AIl~LRsl~~~l~--~l  326 (355)
                           +++..+++     +.....-+..++++|+.|.+||+|+|++|||+|+|++++.+|+.++.+.+|++.-.+.  +.
T Consensus       157 v~~l~~~~e~~~~~~~~~~~~~k~g~~~FlYLEVLDASFSfDGVIGAFAiT~~i~iI~iGLgIGAmfVRSlTi~lV~kgt  236 (294)
T PF04332_consen  157 VNGLGSLFEAEEEPTAAAVAVGKAGLSGFLYLEVLDASFSFDGVIGAFAITNNIFIIAIGLGIGAMFVRSLTIYLVEKGT  236 (294)
T ss_pred             HHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhhhccccceeehhhhhcchHHHHHhcccceeeeeeeeEEeEecCc
Confidence                 11111111     1234578899999999999999999999999999999999999999999999976666  79


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHhhhhcC
Q 018460          327 MADLEYLQPSIAVVLGFIGCKMILDYFV  354 (355)
Q Consensus       327 l~rfp~L~~~a~~iL~fIGvkMil~~fg  354 (355)
                      +++|+|||+|+.+.++..|+.|+++.+|
T Consensus       237 L~~Y~YLEhGA~yAIg~La~IMll~~~~  264 (294)
T PF04332_consen  237 LSEYRYLEHGAHYAIGALAVIMLLSIFG  264 (294)
T ss_pred             HHHhHHHhcchHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999998874

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=97.72  E-value=0.0028  Score=58.95  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=64.1

Q ss_pred             HhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhcc
Q 018460          156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASEE  231 (355)
Q Consensus       156 sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~~~~  231 (355)
                      .=-..|+-++.-+.+.  .++++|+|...-....|.+.=.+|.++|.++++.|    +-....||+.|+.+|++++.++.
T Consensus        15 inP~g~ip~f~~lt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~   92 (203)
T PF01914_consen   15 INPIGNIPIFLSLTKG--MSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSP   92 (203)
T ss_pred             HhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3346788889988986  79999999999999999999999999999999764    45899999999999999998653

These proteins may be transporters. ; GO: 0016021 integral to membrane

>PRK10995 inner membrane protein; Provisional

Probab=97.62  E-value=0.0072  Score=56.75  Aligned_cols=72  Identities=11%  Similarity=0.165  Sum_probs=62.4

Q ss_pred             hchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 018460          157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (355)
Q Consensus       157 LSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~~~  230 (355)
                      ==+.|+-+|.-+.+.  .++++|+|.-....+.|.+.=+++.+.|..+++.|    +.....||++|++.|+++++++
T Consensus        20 nP~g~~pif~~lt~~--~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~   95 (221)
T PRK10995         20 NPLTTVALFLGLSGN--MTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ   95 (221)
T ss_pred             chhhhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            345688888888886  79999999999999999988889999999999754    5689999999999999999754

>COG1971 Predicted membrane protein [Function unknown]

Probab=97.62  E-value=0.0094  Score=55.53  Aligned_cols=173  Identities=17%  Similarity=0.186  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhchhHHHHH-HHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHH
Q 018460          146 EFFAGYILEQSLSVDNLFVF-VLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGIL  219 (355)
Q Consensus       146 ~fltl~lLE~sLSvDNa~Vi-alI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f-----~~I~liGG~fL  219 (355)
                      ++++..++-..+|.||--|= +.=.++  .+++. +.++..|+... ++-.+++.+|..+=+.+     .|-.+++++.|
T Consensus         2 ~~~sllllA~alsmDAFav~l~~G~~~--~k~~~-~~~L~ia~~fG-~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL   77 (190)
T COG1971           2 NIISLLLLAIALSMDAFAVSLGKGLAK--HKIRF-KEALVIALIFG-VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLL   77 (190)
T ss_pred             cHHHHHHHHHHHhhHHHHHHHHhhhhh--ccccH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999996542 222222  22222 34444444443 34455666665543222     35677899999


Q ss_pred             HHHHHHhhhhc--cCCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHHHHHHHHHhhcccHHHHhH
Q 018460          220 LFSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFG  297 (355)
Q Consensus       220 l~~a~k~l~~~--~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~a  297 (355)
                      ++.|.+|+++.  +||++..+++                       +++.     +  -.....++-+.-|+|+.+..++
T Consensus        78 ~~lG~~mI~e~f~~~~~~~~~~~-----------------------~~~~-----~--~~~~~~~laiatSidal~vG~~  127 (190)
T COG1971          78 IILGLKMIIEGFKNEEDEFVDPA-----------------------EKHD-----L--NFKELILLAIATSIDALAVGVG  127 (190)
T ss_pred             HHHHHHHHHHHhchhhcchhccc-----------------------ccch-----h--hHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999864  2222211111                       0110     0  0223445667789999988887


Q ss_pred             hcCC-chhHHHHHHH-------HHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhhcCC
Q 018460          298 VTRD-PFIVFSSNLF-------AILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFVL  355 (355)
Q Consensus       298 iT~d-~~IV~~g~i~-------AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~fg~  355 (355)
                      .+.- .-+...+..+       +.+|.-.. ..+.++..+  |-+..+..+|..+|.|++.+.+++
T Consensus       128 ~a~lgv~i~~~av~iG~~T~il~~~G~~IG-~~~g~~~g~--~ae~lgGiiLI~~G~~iL~~~~~~  190 (190)
T COG1971         128 LAFLGVNILLAAVAIGLITLILSALGAIIG-RKLGKFLGK--YAEILGGIILIGIGVKILLEHLSF  190 (190)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhccC
Confidence            7752 2222222222       33333333 344444444  568899999999999999988763

>TIGR00427 membrane protein, MarC family

Probab=97.54  E-value=0.0085  Score=55.77  Aligned_cols=74  Identities=15%  Similarity=0.321  Sum_probs=64.3

Q ss_pred             HHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 018460          155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (355)
Q Consensus       155 ~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~~~  230 (355)
                      ++=-+.|+-++.-+.+.  .++++|+|......+.|.+.=++|.+.|.++++.|    +-....||+.|+.+|++++..+
T Consensus        17 iinPig~ipvfl~lt~~--~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~   94 (201)
T TIGR00427        17 IINPIGNIPIFISLTEY--YTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE   94 (201)
T ss_pred             HhCcchHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            44456789999999986  79999999999999999988899999999999754    4588999999999999999754

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>PRK10739 putative antibiotic transporter; Provisional

Probab=97.52  E-value=0.013  Score=54.66  Aligned_cols=73  Identities=18%  Similarity=0.250  Sum_probs=62.9

Q ss_pred             HhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 018460          156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (355)
Q Consensus       156 sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~~~  230 (355)
                      +=-+.|+-++..+.+.  .++++|+|...-....|.+.=++|.+.|..+++.|    +-....||+.|+..|+++++++
T Consensus        15 inPig~ipiflslt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~   91 (197)
T PRK10739         15 MDPLGNLPIFMSVLKH--LEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS   91 (197)
T ss_pred             HhHhhHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3446788889999986  79999999999888888888889999999999764    4589999999999999999765

>PRK11469 hypothetical protein; Provisional

Probab=97.39  E-value=0.027  Score=52.04  Aligned_cols=170  Identities=14%  Similarity=0.082  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhh-hHHHHHHHHHHHH
Q 018460          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLIL----LGTATLQRF-EAVNLVLAGILLF  221 (355)
Q Consensus       147 fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~----~g~~Ll~~f-~~I~liGG~fLl~  221 (355)
                      +++..++=.+||.||..|=...=-+  .++...++.+...+..+. +-.++++    +|.++.+.. ++-..+++..|++
T Consensus         3 ~~~i~llaialsmDaF~v~ia~G~~--~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~   79 (188)
T PRK11469          3 ITATVLLAFGMSMDAFAASIGKGAT--LHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIF   79 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc--ccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778889999999997653322211  233333443333333332 2233333    333332211 2345788889999


Q ss_pred             HHHHhhhhcc--CCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHHHHHHHHHhhcccHHHHhHhc
Q 018460          222 SSFKLFASEE--DDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT  299 (355)
Q Consensus       222 ~a~k~l~~~~--ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT  299 (355)
                      .|.+++.+.-  +|+++++..                      + +     ..    .....+.=+.-|+|+..+-++.+
T Consensus        80 lG~~mi~e~~~~~~~~~~~~~----------------------~-~-----~~----~~~~l~LaiAtSiDAlavGi~~~  127 (188)
T PRK11469         80 LGGRMIIEGFRGADDEDEEPR----------------------R-R-----HG----FWLLVTTAIATSLDAMAVGVGLA  127 (188)
T ss_pred             HHHHHHHHHHhcccccccccc----------------------c-C-----CC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988641  111111000                      0 0     01    11233344567999988876654


Q ss_pred             --CC-chh-----HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhhcC
Q 018460          300 --RD-PFI-----VFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFV  354 (355)
Q Consensus       300 --~d-~~I-----V~~g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~fg  354 (355)
                        +- ++.     -.++.++...++.... .+.+...|  +.+..+.++|..+|+|++++.++
T Consensus       128 ~~g~~~~~~~~~ig~~s~~~~~~G~~lG~-~~g~~~g~--~a~~lgG~iLI~iGi~il~~h~~  187 (188)
T PRK11469        128 FLQVNIIATALAIGCATLIMSTLGMMVGR-FIGSIIGK--KAEILGGLVLIGIGVQILWTHFH  187 (188)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcC
Confidence              32 221     1223333444444333 33345555  46789999999999999988653

>PRK11111 hypothetical protein; Provisional

Probab=97.29  E-value=0.027  Score=53.10  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             chhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 018460          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (355)
Q Consensus       158 SvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~~~  230 (355)
                      =+.|+-++..+.+.  .++++|+|......+.|.+.=.+|.+.|-++++.|    +-....||+.|+.+|++|+..+
T Consensus        23 Pig~ipiflslt~~--~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~   97 (214)
T PRK11111         23 PVGILPVFISMTSH--QTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK   97 (214)
T ss_pred             cchhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            45688888888886  78999999999999999888889999999999754    4588999999999999999754

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=97.24  E-value=0.021  Score=53.58  Aligned_cols=77  Identities=22%  Similarity=0.282  Sum_probs=66.2

Q ss_pred             HHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhh
Q 018460          153 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFA  228 (355)
Q Consensus       153 LE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~  228 (355)
                      .=.+=...|+-++..+.+.  .|+++|+|+..--...|.+.=.+|.+.|.++++-|    +-....||..|.++|++++.
T Consensus        15 f~i~dP~G~ipvf~slt~~--~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~   92 (203)
T COG2095          15 FAIIDPIGNLPVFISLTKG--LSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLF   92 (203)
T ss_pred             HHHhCCCchhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhc
Confidence            3345567899999999996  89999999999999999988899999999999754    34788999999999999998


Q ss_pred             hcc
Q 018460          229 SEE  231 (355)
Q Consensus       229 ~~~  231 (355)
                      .+.
T Consensus        93 ~~~   95 (203)
T COG2095          93 GPT   95 (203)
T ss_pred             CCc
Confidence            653

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=97.15  E-value=0.15  Score=46.57  Aligned_cols=86  Identities=12%  Similarity=0.090  Sum_probs=56.1

Q ss_pred             hhhHHHHHHHHHH-HHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHH
Q 018460          141 ASKASEFFAGYIL-EQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLV  214 (355)
Q Consensus       141 ~~~a~~fltl~lL-E~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~f~~----I~li  214 (355)
                      +|.+..|+...++ =.+=+-||+.++..-.++ +   ..+--....|+..+...=..+...+. .+++.++|    ++++
T Consensus         3 ~~~~~~f~~~~~~~~~sPGP~~~~v~~~~~~~-G---~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~   78 (195)
T PRK10323          3 PTLLSAFWTYTLITAMTPGPNNILALSSATSH-G---FRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWA   78 (195)
T ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555443 233388999999887764 2   22233456677777655455554455 55555544    7899


Q ss_pred             HHHHHHHHHHHhhhhc
Q 018460          215 LAGILLFSSFKLFASE  230 (355)
Q Consensus       215 GG~fLl~~a~k~l~~~  230 (355)
                      |++||+|.|+|+++.+
T Consensus        79 Ga~YLlyLg~~~~~s~   94 (195)
T PRK10323         79 GAAYIVWLAWKIATSP   94 (195)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999999864

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=97.10  E-value=0.006  Score=56.04  Aligned_cols=76  Identities=24%  Similarity=0.242  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018460          144 ASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFS  222 (355)
Q Consensus       144 a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~f~~I~liGG~fLl~~  222 (355)
                      |....+..+.+.+.|+||+....-+.+        +-..+..|...|+ +||...-.+.. ++++++++.+.++++|.|+
T Consensus       106 ~~~v~~I~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~~~~-~l~~~p~l~~~~~~~L~~i  176 (183)
T PF03741_consen  106 WLAVIQIELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFLLAK-LLERFPYLKYLAAAILGFI  176 (183)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            344566788999999999998887773        4478888998887 78877666555 6789999999999999999


Q ss_pred             HHHhhh
Q 018460          223 SFKLFA  228 (355)
Q Consensus       223 a~k~l~  228 (355)
                      |.|++.
T Consensus       177 g~~li~  182 (183)
T PF03741_consen  177 GVKLIL  182 (183)
T ss_pred             HHHHhh
Confidence            999975

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=96.99  E-value=0.012  Score=56.83  Aligned_cols=78  Identities=23%  Similarity=0.246  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018460          144 ASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFS  222 (355)
Q Consensus       144 a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~f~~I~liGG~fLl~~  222 (355)
                      |....+..++|.+.|.||+.-..-+.++        .-++..|...|+ +||...-.+.. ++++++++.+.+.++|+|+
T Consensus       134 ~~ai~~I~i~D~vFSlDSV~Aa~g~~~~--------~~im~~a~i~aI~~m~~aa~~l~~-ll~r~p~l~~~~~~iL~~I  204 (254)
T COG0861         134 WGAIIQIELADLVFSLDSVIAAVGMAGH--------PFVMVTAVIFAILVMRFAAFLLAR-LLERHPTLKYLALVILLFI  204 (254)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcC--------chHHHHHHHHHHHHHHHHHHHHHH-HHHHchHHHHHHHHHHHHH
Confidence            4445557899999999999988887753        468899999998 78887666555 6789999999999999999


Q ss_pred             HHHhhhhc
Q 018460          223 SFKLFASE  230 (355)
Q Consensus       223 a~k~l~~~  230 (355)
                      |.|++.++
T Consensus       205 G~kli~~~  212 (254)
T COG0861         205 GVKLILEG  212 (254)
T ss_pred             HHHHHHhh
Confidence            99999865

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=96.72  E-value=0.0094  Score=54.51  Aligned_cols=74  Identities=23%  Similarity=0.294  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhhcccHHHHhHhcCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhh
Q 018460          277 VAVIELSDIAFAVDSIPAVFGVTRDP------FIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL  350 (355)
Q Consensus       277 vi~Iel~DlvFSlDSV~Aa~aiT~d~------~IV~~g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil  350 (355)
                      +.++.+.|++.|+||+....-+|++.      -+...|.+.|.. +|...-.+...+=++|++++++..+|.++|.||+.
T Consensus         2 ~~~li~le~vLs~DN~~vi~~~t~~lp~~~r~~~~~~G~~~A~v-lr~if~~~G~~ll~~~~~~iaGGllLl~ia~~ml~   80 (176)
T TIGR03717         2 LLQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGAIV-LRILLTAVAVYLLAIPFLKLIGGLLLLWIGWKLLL   80 (176)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            56899999999999999988888763      266666666654 45554444444444899999999999999999986


Q ss_pred             h
Q 018460          351 D  351 (355)
Q Consensus       351 ~  351 (355)
                      +
T Consensus        81 ~   81 (176)
T TIGR03717        81 E   81 (176)
T ss_pred             c
Confidence            4

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=96.70  E-value=0.061  Score=50.95  Aligned_cols=78  Identities=17%  Similarity=0.199  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018460          144 ASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFS  222 (355)
Q Consensus       144 a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~f~~I~liGG~fLl~~  222 (355)
                      |....+..+.|.+.|.||+....-+.+.        ...+..|...++ +||..--.+. .++++|+++.+.+.++|.|+
T Consensus        96 ~~av~~I~~~DlvFSlDSV~A~~git~~--------~~ii~~g~~~sIl~lr~~s~~l~-~li~r~p~L~~~~~~iL~~i  166 (215)
T TIGR03716        96 WRTVLKVELMDIAFSVDSILAAVALSGQ--------FWVVFLGGIIGILIMRFAATIFV-KLLERFPELETAAFLLIGWI  166 (215)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhccC--------hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            3446667899999999999988877543        357888888887 7887766664 47789999999999999999


Q ss_pred             HHHhhhhc
Q 018460          223 SFKLFASE  230 (355)
Q Consensus       223 a~k~l~~~  230 (355)
                      |.|++.+.
T Consensus       167 g~kLil~~  174 (215)
T TIGR03716       167 GVKLLLET  174 (215)
T ss_pred             HHHHHHHH
Confidence            99999865

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=96.67  E-value=0.37  Score=42.94  Aligned_cols=69  Identities=25%  Similarity=0.237  Sum_probs=43.2

Q ss_pred             hchhHHHHHHHHhCcCCCCHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHH-Hh----hhHHHHHHHHHHHHHHHHhhhh
Q 018460          157 LSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTATL-QR----FEAVNLVLAGILLFSSFKLFAS  229 (355)
Q Consensus       157 LSvDNa~VialI~~~f~lP~~~q~raL--~~GI~gAivlRiifi~~g~~Ll-~~----f~~I~liGG~fLl~~a~k~l~~  229 (355)
                      -+-+|+.++..-.++      -+++++  ..|...+...=+.....|...+ +.    ..++.++||+||+|.|++.+++
T Consensus         7 PGP~~~~~i~~~~~~------G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~   80 (191)
T PF01810_consen    7 PGPVNLLVISNGLRK------GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRS   80 (191)
T ss_pred             CCHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456788888876653      233443  3444444444444444444333 32    3458899999999999999986


Q ss_pred             cc
Q 018460          230 EE  231 (355)
Q Consensus       230 ~~  231 (355)
                      ..
T Consensus        81 ~~   82 (191)
T PF01810_consen   81 KF   82 (191)
T ss_pred             cc
Confidence            53

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=96.49  E-value=0.068  Score=49.81  Aligned_cols=73  Identities=22%  Similarity=0.284  Sum_probs=47.8

Q ss_pred             hchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhhhhcc
Q 018460          157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF--EAVNLVLAGILLFSSFKLFASEE  231 (355)
Q Consensus       157 LSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f--~~I~liGG~fLl~~a~k~l~~~~  231 (355)
                      -.+|+.++....|++  .+.+.|+|-..+|=..+...=+..-+++...++..  +|++-+.|+.=++.|+|.+.+.+
T Consensus         4 TniDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~~~   78 (191)
T PF03596_consen    4 TNIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFSGE   78 (191)
T ss_pred             ecHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            368999999999997  45555677777773333322222222222223222  58888899999999999877544

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=96.39  E-value=0.76  Score=42.61  Aligned_cols=78  Identities=26%  Similarity=0.307  Sum_probs=53.3

Q ss_pred             HHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh----hhHHHHHHHHHHHHHH
Q 018460          149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG-TATLQR----FEAVNLVLAGILLFSS  223 (355)
Q Consensus       149 tl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g-~~Ll~~----f~~I~liGG~fLl~~a  223 (355)
                      +..++-.+=+=||+.+++.-.++    -..+-...-.|+..+...=.++..+| +.++..    |..++++|++||+|.|
T Consensus        12 ~~~~~~~~PGP~~~~v~~~~~~~----G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg   87 (208)
T COG1280          12 AALVLAATPGPDNLLVLARSLSR----GRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLG   87 (208)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34555666778999998887763    23344455556555555555555665 345544    4568999999999999


Q ss_pred             HHhhhhc
Q 018460          224 FKLFASE  230 (355)
Q Consensus       224 ~k~l~~~  230 (355)
                      +|+++..
T Consensus        88 ~~~~ra~   94 (208)
T COG1280          88 WKALRAG   94 (208)
T ss_pred             HHHHhcc
Confidence            9999865

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=95.82  E-value=1.6  Score=40.86  Aligned_cols=78  Identities=15%  Similarity=0.150  Sum_probs=45.8

Q ss_pred             HHHHHHHHhchhHHHH-HHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-HHHHHHHHHHHHHHHH
Q 018460          149 AGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFK  225 (355)
Q Consensus       149 tl~lLE~sLSvDNa~V-ialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f-~-~I~liGG~fLl~~a~k  225 (355)
                      +..++=.++|.|+..| ++.=.+.  ++. .-+.++..|+.-+ +|=.+-..+|..+-+.+ + +-.+++++.|++.|.+
T Consensus         2 ~i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~-~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~   77 (206)
T TIGR02840         2 SLLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISG-LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIW   77 (206)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence            3567788999999877 4444443  222 1234455554444 22223333444333322 2 4678999999999999


Q ss_pred             hhhhc
Q 018460          226 LFASE  230 (355)
Q Consensus       226 ~l~~~  230 (355)
                      ++.+.
T Consensus        78 mi~~~   82 (206)
T TIGR02840        78 IIYNA   82 (206)
T ss_pred             HHHHH
Confidence            98753

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>PRK09304 arginine exporter protein; Provisional

Probab=95.74  E-value=1.6  Score=40.09  Aligned_cols=78  Identities=19%  Similarity=0.149  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHHHHHHHHH
Q 018460          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLF  221 (355)
Q Consensus       147 fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~f~~----I~liGG~fLl~  221 (355)
                      ++.|+.+-..=+-||+.++..-.++      .+......|+..+..+=.....+|. .+++.+++    ++++|++||+|
T Consensus         9 ~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly   82 (207)
T PRK09304          9 FALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW   82 (207)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666667778899888875542      1233455555555555545444444 45656554    78899999999


Q ss_pred             HHHHhhhhc
Q 018460          222 SSFKLFASE  230 (355)
Q Consensus       222 ~a~k~l~~~  230 (355)
                      .|+|.++.+
T Consensus        83 Lg~~~~rs~   91 (207)
T PRK09304         83 YGFGAFKTA   91 (207)
T ss_pred             HHHHHHHHh
Confidence            999999864

>COG2119 Predicted membrane protein [Function unknown]

Probab=95.68  E-value=0.44  Score=44.55  Aligned_cols=164  Identities=16%  Similarity=0.224  Sum_probs=108.3

Q ss_pred             HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHh
Q 018460          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKL  226 (355)
Q Consensus       150 l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~f~--~I~liGG~fLl~~a~k~  226 (355)
                      ..+-|+   +|--+.++++...     ++|++..+-|+.+|. .|-+.-..+|-+..+-++  +..++.|..-+..|+|+
T Consensus        11 v~laEi---GDKT~lia~llA~-----r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~   82 (190)
T COG2119          11 VALAEI---GDKTQLIAMLLAM-----RYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWM   82 (190)
T ss_pred             HHHHHh---ccHHHHHHHHHHH-----hcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Confidence            344454   8999999998873     777899999999997 788888888888886666  78888888777789999


Q ss_pred             hhhccCCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHH---HHHHHHHhhcccHHHHhHhc---C
Q 018460          227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAV---IELSDIAFAVDSIPAVFGVT---R  300 (355)
Q Consensus       227 l~~~~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~---Iel~DlvFSlDSV~Aa~aiT---~  300 (355)
                      +.++.++++..+.+                        .+   ..++..+++.   =|+=|     -+=+|.++++   +
T Consensus        83 l~edk~~~~e~~~~------------------------~~---~~~f~~tfi~~FlaE~GD-----KTQiATIaLaA~~~  130 (190)
T COG2119          83 LIEDKEDDEEAQAA------------------------SP---RGVFVTTFITFFLAELGD-----KTQIATIALAADYH  130 (190)
T ss_pred             hccccccccccccc------------------------cc---ccHHHHHHHHHHHHHhcc-----HHHHHHHHHhhcCC
Confidence            98764322211100                        00   1233333333   34333     2345555554   3


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHhhhhc
Q 018460          301 DPFIVFSSNLFAILGLRSLFTLISEGMADL---EYLQPSIAVVLGFIGCKMILDYF  353 (355)
Q Consensus       301 d~~IV~~g~i~AIl~LRsl~~~l~~ll~rf---p~L~~~a~~iL~fIGvkMil~~f  353 (355)
                      .++.|+.|..+|.+.--.+.-+..+.+.+.   ..++..+++...+.|..++.+.+
T Consensus       131 ~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~~  186 (190)
T COG2119         131 SPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQVF  186 (190)
T ss_pred             CceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888888888877777776666666543   34556666777777777766654

>PRK10958 leucine export protein LeuE; Provisional

Probab=95.68  E-value=1.8  Score=40.11  Aligned_cols=73  Identities=15%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             HHHHHhchhHHHHHHHHhCcCCCCHHhHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHhh----hHHHHHHHHHHHHHHH
Q 018460          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGT-ATLQRF----EAVNLVLAGILLFSSF  224 (355)
Q Consensus       152 lLE~sLSvDNa~VialI~~~f~lP~~~q~raL--~~GI~gAivlRiifi~~g~-~Ll~~f----~~I~liGG~fLl~~a~  224 (355)
                      ++=.+=+-||+.++..-.++      -+++++  ..|+..+...=+.....|. .+++.+    ..++++|++||+|.|+
T Consensus        19 ~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~   92 (212)
T PRK10958         19 FIVLLPGPNSLYVLSTAARR------GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGV   92 (212)
T ss_pred             HHhcCCchHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            34456688999999987763      233444  4455555555555555444 344443    4578999999999999


Q ss_pred             Hhhhhc
Q 018460          225 KLFASE  230 (355)
Q Consensus       225 k~l~~~  230 (355)
                      |.+++.
T Consensus        93 ~~~~~~   98 (212)
T PRK10958         93 KMLRAA   98 (212)
T ss_pred             HHHHhh
Confidence            999864

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=95.30  E-value=2  Score=38.25  Aligned_cols=68  Identities=15%  Similarity=0.159  Sum_probs=44.1

Q ss_pred             chhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHHHHHhhhh
Q 018460          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSFKLFAS  229 (355)
Q Consensus       158 SvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~f~----~I~liGG~fLl~~a~k~l~~  229 (355)
                      +-||+.++..-.++    ...+--....|+..+...=+++..+|. .+++..+    .+.++||+||+|.|++.+++
T Consensus         3 GP~~~~~~~~~~~~----G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~   75 (185)
T TIGR00949         3 GPNFFVVMQTSLSS----GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK   75 (185)
T ss_pred             CcchHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34788887776653    223333445566666555555555544 4555444    47889999999999999985

>PRK10229 threonine efflux system; Provisional

Probab=94.79  E-value=3.1  Score=37.85  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHH
Q 018460          148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFS  222 (355)
Q Consensus       148 ltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~f~----~I~liGG~fLl~~  222 (355)
                      ....++..+=+-||+.++..-.++    ...+--....|+..+...=.++..+|. .+++.++    .+.++|++||+|.
T Consensus        10 ~~~~~~~~sPGP~~~~vi~~~~~~----G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlyl   85 (206)
T PRK10229         10 MVHIVALMSPGPDFFFVSQTAVSR----SRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWM   85 (206)
T ss_pred             HHHHHHhcCCCchhHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            345566667788999999887764    223333455566666555555555555 4555544    4788999999999


Q ss_pred             HHHhhhhc
Q 018460          223 SFKLFASE  230 (355)
Q Consensus       223 a~k~l~~~  230 (355)
                      |++.+++.
T Consensus        86 g~~~~~~~   93 (206)
T PRK10229         86 GYQMLRGA   93 (206)
T ss_pred             HHHHHHhc
Confidence            99999854

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=94.49  E-value=0.21  Score=49.62  Aligned_cols=76  Identities=21%  Similarity=0.311  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhhcccHHHHhHhcC--C-c-----hhHHHHHHHHHHHHHHHHH-HHHHHHHhhhcHHHHHHHHHHHHH
Q 018460          275 LTVAVIELSDIAFAVDSIPAVFGVTR--D-P-----FIVFSSNLFAILGLRSLFT-LISEGMADLEYLQPSIAVVLGFIG  345 (355)
Q Consensus       275 ~avi~Iel~DlvFSlDSV~Aa~aiT~--d-~-----~IV~~g~i~AIl~LRsl~~-~l~~ll~rfp~L~~~a~~iL~fIG  345 (355)
                      ....+.-+.|.+.|+||+.....+..  + |     -..+.|.+ +++.+|...- .-+.++++|+++++...++|.|+|
T Consensus        63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~-gAlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a  141 (302)
T TIGR03718        63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGIL-GALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTG  141 (302)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45667778899999999987766642  1 2     35566654 5557777755 445788899999999999999999


Q ss_pred             HHHhhh
Q 018460          346 CKMILD  351 (355)
Q Consensus       346 vkMil~  351 (355)
                      +||+.+
T Consensus       142 ~k~~~~  147 (302)
T TIGR03718       142 IKMLFE  147 (302)
T ss_pred             HHHHhh
Confidence            999975

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>TIGR00948 2a75 L-lysine exporter

Probab=92.55  E-value=0.97  Score=40.27  Aligned_cols=67  Identities=15%  Similarity=0.067  Sum_probs=45.9

Q ss_pred             chhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhHHHHHHHHHHHHHHHHhhhhc
Q 018460          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSSFKLFASE  230 (355)
Q Consensus       158 SvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~----f~~I~liGG~fLl~~a~k~l~~~  230 (355)
                      +-||++++..-.++      .+--....|+..+...=+++..+|. .+++.    +..++++|++||+|.|+|.+++.
T Consensus         6 GP~~~~vi~~~~~~------~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~   77 (177)
T TIGR00948         6 GAQNAFVLRQGIRR------EHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA   77 (177)
T ss_pred             cchHHHHHHHHHcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888888887763      1233455666666555555555554 45554    44589999999999999999864

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=90.81  E-value=13  Score=33.93  Aligned_cols=77  Identities=12%  Similarity=0.108  Sum_probs=49.6

Q ss_pred             HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHHHH
Q 018460          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSF  224 (355)
Q Consensus       150 l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~f~----~I~liGG~fLl~~a~  224 (355)
                      ..++-.+=+=||+.++.--.++    ...+--....|+..+...=.+...+|. .+++.++    .++++|++||+|.|+
T Consensus        13 ~~~~~~sPGP~~~~v~~~~~~~----G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~   88 (205)
T PRK10520         13 SIILSLSPGSGAINTMSTSISH----GYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGI   88 (205)
T ss_pred             HHHHhcCCchhHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3444555677888888876653    222223344466666555555555554 4555544    578999999999999


Q ss_pred             Hhhhhc
Q 018460          225 KLFASE  230 (355)
Q Consensus       225 k~l~~~  230 (355)
                      |.++.+
T Consensus        89 ~~~~s~   94 (205)
T PRK10520         89 QQWRAA   94 (205)
T ss_pred             HHHhCC
Confidence            999864

>PRK11469 hypothetical protein; Provisional

Probab=86.53  E-value=15  Score=34.02  Aligned_cols=98  Identities=19%  Similarity=0.175  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHh----Ch----hh---HHHHHHHHHHHHHhchhHHHH-HHHHhCcCCCCHHhHHHHHHHHHHHH
Q 018460          123 FCVSTAVAFGLGVGFIE----GA----SK---ASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA  190 (355)
Q Consensus       123 ~wv~lal~F~~~i~~~~----g~----~~---a~~fltl~lLE~sLSvDNa~V-ialI~~~f~lP~~~q~raL~~GI~gA  190 (355)
                      =|++..+++.+..|...    +.    +.   -..+....++=.++|+||.-| ++.-+-.  +|.  -.-++..|+.- 
T Consensus        70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~~~~g--~~~--~~~~~~ig~~s-  144 (188)
T PRK11469         70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFLQ--VNI--IATALAIGCAT-  144 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--hhH--HHHHHHHHHHH-
Confidence            37777777776666432    11    11   123456677888999999988 6665543  332  12334444433 


Q ss_pred             HHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHhhhh
Q 018460          191 IVFRLSLILLGTATLQR-----FEAVNLVLAGILLFSSFKLFAS  229 (355)
Q Consensus       191 ivlRiifi~~g~~Ll~~-----f~~I~liGG~fLl~~a~k~l~~  229 (355)
                          +++..+|.++=.+     -.|..++||+.|+..|+|.+.+
T Consensus       145 ----~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il~~  184 (188)
T PRK11469        145 ----LIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWT  184 (188)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3344444433221     1367889999999999999865

>COG1279 Lysine efflux permease [General function prediction only]

Probab=84.70  E-value=37  Score=32.28  Aligned_cols=72  Identities=22%  Similarity=0.229  Sum_probs=45.1

Q ss_pred             HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhH----HHHHHHHHHHH
Q 018460          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG----TATLQRFEA----VNLVLAGILLF  221 (355)
Q Consensus       150 l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g----~~Ll~~f~~----I~liGG~fLl~  221 (355)
                      +.-+=..+++.|+||+---.+        |++++..-+.- .+.=++++..+    ..++++.+|    +.+.|.+||+|
T Consensus        12 ~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~c-~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~   82 (202)
T COG1279          12 GASLILPIGAQNAFVLNQGIR--------REYVLPIALLC-AISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLY   82 (202)
T ss_pred             HHHHHHhccchhHHHHHHHHh--------hccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            344456779999999865333        35555444333 33444444433    345556565    56678889999


Q ss_pred             HHHHhhhhc
Q 018460          222 SSFKLFASE  230 (355)
Q Consensus       222 ~a~k~l~~~  230 (355)
                      .|++-+++.
T Consensus        83 yg~~a~~~a   91 (202)
T COG1279          83 YGLLALKSA   91 (202)
T ss_pred             HHHHHHHhh
Confidence            999998854

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=81.63  E-value=43  Score=30.82  Aligned_cols=73  Identities=19%  Similarity=0.121  Sum_probs=47.7

Q ss_pred             HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHH
Q 018460          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSSF  224 (355)
Q Consensus       150 l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~--I~liGG~fLl~~a~  224 (355)
                      ..+.-..-+.-+....+++.+.  .|+++|.++.-+--.+.-+-.++...++.++.+.+.|  ..++.++..+..++
T Consensus        92 ~~l~g~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i  166 (352)
T PF07690_consen   92 RFLLGIGSGFFSPASNALIADW--FPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI  166 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--CCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccc--chhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence            3444444567777888888887  6777887777555555556667777888877755544  55555555554444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00