Citrus Sinensis ID: 018473

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----

MSKSIAANPSGEDSKAPLINQRTVIITLFVVAAVSCLFLYHTANPFEFLPRSSAYDVIAPSMKAQKSSNDPSLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQQKLLILDLHLRTGEILWSCLRIRNHSHDHGLCLKNAERHPFILLTSRLTVFRLLRRRLVLKRAIINDTCFRVSLDFWID

ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHcccccccccEEEEEEcHHHHHHHHHccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEccccccccccccEEEEEcccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEcccccc

ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEEcHHHcccccHHHHHHHHHHcccccHHHHccEEEEEEcHHHHHHHHHccccEEEEcccccccccHHcccccHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEEccccccccccccEEEEEcccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHccEEEEEEcccHccccccccccccccHHcHEEEEHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEcc

msksiaanpsgedskaplinqRTVIITLFVVAAVSCLFLyhtanpfeflprssaydviapsmkaqkssndpSLEKILKRAAMGDNTVIITTLNqawaepnsIFDIFLESfrtgngtgkLLDHLVVVALDSkaldhclsthphcyalntsgldfsgkeaYFMTSSYLEMMWIRIRLLSDVLAMgynfvftdadivwlqnpfqrfdpdadfqiacdrfsgnsfnlrnepnggfnyvksnnrTIEFYKFWYnsrkmfpglhdqdvlneikfdpYIQKIQQKLLILDLHLRTGEILWSCLRIrnhshdhglclknaerhpfiLLTSRLTVFRLLRRRLVLKRAIINDTCFRVSLDFWID

msksiaanpsgedskapliNQRTVIITLFVVAAVSCLFLYHTANPFEFLPRSSAYDVIAPsmkaqkssndpSLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGnsfnlrnepnggfnyvksnNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQQKLLILDLHLRTGEILWSCLRIRNHSHDHGLCLKNAERHPFILLTSRLTVFRLLRRRLVlkraiindtcfrvsldfwid

MSKSIAANPSGEDSKAPLINQRTVIITLFVVAAVSCLFLYHTANPFEFLPRSSAYDVIAPSMKAQKSSNDPSLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYiqkiqqkllilDLHLRTGEILWSCLRIRNHSHDHGLCLKNAERHPFIlltsrltvfrllrrrlvlkrAIINDTCFRVSLDFWID

*****************LINQRTVIITLFVVAAVSCLFLYHTANPFEFLPRSSAYDVI*****************ILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQQKLLILDLHLRTGEILWSCLRIRNHSHDHGLCLKNAERHPFILLTSRLTVFRLLRRRLVLKRAIINDTCFRVSLDFWI*

*********************RTVIITLFVVAAVSCLFLYHTANPFEFLP************************KILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKE*YFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQQKLLILDLHLRTGEILWSCLRIRNHSHDHGLCLKNAERHPFILLTSRLTVFRLLRRRLVLKRAIINDTCFRVSLDFWID

*************SKAPLINQRTVIITLFVVAAVSCLFLYHTANPFEFLPRSSAYDVIAPS**********SLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQQKLLILDLHLRTGEILWSCLRIRNHSHDHGLCLKNAERHPFILLTSRLTVFRLLRRRLVLKRAIINDTCFRVSLDFWID

***************APLINQRTVIITLFVVAAVSCLFLYHTANPF**********************NDPSLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQQKLLILDLHLRTGEILWSCLRIRNHSHDHGLCLKNAERHPFILLTSRLTVFRLLRRRLVLKRAIINDTCFRVSLDFWID

iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		355	2.2.26 [Sep-21-2011]
P0C042		367	Uncharacterized protein A	no	no	0.571	0.553	0.525	1e-56
Q3E6Y3		329	Uncharacterized protein A	no	no	0.535	0.577	0.437	6e-39

>sp\|P0C042\|Y4597_ARATH Uncharacterized protein At4g15970 OS=Arabidopsis thaliana GN=At4g15970 PE=2 SV=1	Back alignment and function desciption

 Score =  220 bits (560), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/213 (52%), Positives = 137/213 (64%), Gaps = 10/213 (4%)

Query: 72  SLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSK 131
            L KIL  AA  D TVIITTLN+AW+EPNS FD+FL SF  G GT  LL HLVV  LD +
Sbjct: 41  KLGKILTEAATEDKTVIITTLNKAWSEPNSTFDLFLHSFHVGKGTKPLLRHLVVACLDEE 100

Query: 132 ALDHCLSTHPH-CYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTD 190
           A   C   HPH CY + T G+DF+G +  FMT  YL+MMW RI  L  +L + YNF+FT 
Sbjct: 101 AYSRCSEVHPHRCYFMKTPGIDFAG-DKMFMTPDYLKMMWRRIEFLGTLLKLRYNFIFTI 159

Query: 191 ADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNS 250
                   PF R   + DFQIACDR+SG+  ++ N  NGGF +VK+N RTI+FY +WY S
Sbjct: 160 --------PFPRLSKEVDFQIACDRYSGDDKDIHNAVNGGFAFVKANQRTIDFYNYWYMS 211

Query: 251 RKMFPGLHDQDVLNEIKFDPYIQKIQQKLLILD 283
           R  +P  HDQDVL++IK   Y  KI  K+  LD
Sbjct: 212 RLRYPDRHDQDVLDQIKGGGYPAKIGLKMRFLD 244

Arabidopsis thaliana (taxid: 3702)

>sp\|Q3E6Y3\|Y1869_ARATH Uncharacterized protein At1g28695 OS=Arabidopsis thaliana GN=At1g28695 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		355
224111368		404	predicted protein [Populus trichocarpa]	0.740	0.650	0.586	5e-85
359491833		346	PREDICTED: uncharacterized protein At4g1	0.791	0.812	0.527	7e-83
356529763		349	PREDICTED: uncharacterized protein At4g1	0.777	0.790	0.539	7e-80
255561745		394	pentatricopeptide repeat-containing prot	0.740	0.667	0.567	1e-79
224099643		277	predicted protein [Populus trichocarpa]	0.608	0.779	0.658	2e-79
356560053		379	PREDICTED: uncharacterized protein At4g1	0.752	0.704	0.56	3e-79
224120464		329	predicted protein [Populus trichocarpa]	0.726	0.784	0.572	7e-79
449439235		380	PREDICTED: uncharacterized protein At4g1	0.676	0.631	0.589	9e-78
224125690		357	predicted protein [Populus trichocarpa]	0.757	0.753	0.547	1e-77
359473691		415	PREDICTED: uncharacterized protein At4g1	0.647	0.554	0.588	1e-77

>gi\|224111368\|ref\|XP_002315829.1\| predicted protein [Populus trichocarpa] gi\|222864869\|gb\|EEF02000.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  320 bits (821), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 162/276 (58%), Positives = 193/276 (69%), Gaps = 13/276 (4%)

Query: 26  ITLFVVAAVSCLFLYHTANPFEFLPRSSAYDV-IAPSMKAQKSSN-----------DPSL 73
           + +FV  +VS L LY  A+   F   SS Y   I PS++   +S+           D  L
Sbjct: 49  VLVFVAISVSVLLLYGAADSLRFQSSSSGYSFNIFPSLRNSNNSDSKLSINDDGDDDYKL 108

Query: 74  EKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKAL 133
           EK+LK AAM D TVII TLN+AWA PN+I D+FLESFR G GT +LL+HLV+VALD KA 
Sbjct: 109 EKVLKEAAMEDKTVIIATLNEAWAAPNTIIDLFLESFRIGQGTRRLLNHLVIVALDRKAY 168

Query: 134 DHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTDADI 193
             C+  H HC+AL T GLDF   EAYFMT +YLEMMW RI  L  VL MGYNFVFTDADI
Sbjct: 169 KRCMEFHAHCFALVTQGLDFH-DEAYFMTPAYLEMMWRRIDFLRAVLQMGYNFVFTDADI 227

Query: 194 VWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKM 253
           +W ++PF RF  DADFQIACD F GNS +++N PNGGFNYVKSNNRTIEFYKFWY+SR+ 
Sbjct: 228 MWFRDPFPRFYLDADFQIACDHFLGNSSDIQNRPNGGFNYVKSNNRTIEFYKFWYSSRET 287

Query: 254 FPGLHDQDVLNEIKFDPYIQKIQQKLLILDLHLRTG 289
           +PG HDQDVLN IKFDP+I+ +  K+  LD     G
Sbjct: 288 YPGYHDQDVLNFIKFDPFIEDLGLKMRFLDTAFFGG 323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359491833\|ref\|XP_002270793.2\| PREDICTED: uncharacterized protein At4g15970-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356529763\|ref\|XP_003533457.1\| PREDICTED: uncharacterized protein At4g15970-like [Glycine max]	Back alignment and taxonomy information

>gi\|255561745\|ref\|XP_002521882.1\| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi\|223538920\|gb\|EEF40518.1\| pentatricopeptide repeat-containing protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224099643\|ref\|XP_002311563.1\| predicted protein [Populus trichocarpa] gi\|222851383\|gb\|EEE88930.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356560053\|ref\|XP_003548310.1\| PREDICTED: uncharacterized protein At4g15970-like [Glycine max]	Back alignment and taxonomy information

>gi\|224120464\|ref\|XP_002318336.1\| predicted protein [Populus trichocarpa] gi\|222859009\|gb\|EEE96556.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449439235\|ref\|XP_004137392.1\| PREDICTED: uncharacterized protein At4g15970-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224125690\|ref\|XP_002329694.1\| predicted protein [Populus trichocarpa] gi\|222870602\|gb\|EEF07733.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359473691\|ref\|XP_002273214.2\| PREDICTED: uncharacterized protein At4g15970 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		355
TAIR\|locus:2204508		386	AT1G14590 "AT1G14590" [Arabido	0.735	0.676	0.536	1.4e-73
TAIR\|locus:4515102789		408	AT2G02061 "AT2G02061" [Arabido	0.695	0.605	0.528	8.9e-70
TAIR\|locus:2156304		367	AT5G44820 "AT5G44820" [Arabido	0.698	0.675	0.542	1.8e-69
TAIR\|locus:2119827		715	AT4G19970 "AT4G19970" [Arabido	0.692	0.344	0.544	8e-69
TAIR\|locus:2018783		340	AT1G28710 "AT1G28710" [Arabido	0.535	0.558	0.437	5.3e-40
TAIR\|locus:2018688		338	AT1G28700 "AT1G28700" [Arabido	0.529	0.556	0.435	1.1e-39
TAIR\|locus:1006230710		329	AT1G28695 "AT1G28695" [Arabido	0.532	0.574	0.44	1.3e-38
TAIR\|locus:2164476		322	AT5G40900 "AT5G40900" [Arabido	0.605	0.667	0.356	9.5e-34
TAIR\|locus:2037273		402	RRA1 "REDUCED RESIDUAL ARABINO	0.532	0.470	0.25	1.2e-06
TAIR\|locus:2037248		428	RRA2 "REDUCED RESIDUAL ARABINO	0.532	0.441	0.264	1.7e-06

TAIR\|locus:2204508 AT1G14590 "AT1G14590" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 147/274 (53%), Positives = 184/274 (67%)

Query:     2 SKSIAANP----SGEDSKAPLINQRTVIITLFVVAAVSCLFLYHTANPFEFLPRSSAYDV 57
             + S A NP    SGE S  P I  R   + L  ++ +SC  LY  A+   F P    +D 
Sbjct:    18 ASSSANNPFAEGSGEMSPGPSIPLRRAALFLAAIS-ISCFVLYRAADSLSFSP--PIFD- 73

Query:    58 IAPSMKAQKSSNDPSLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTG 117
                 + +   + +P LE +L +AA  D TV++TTLN AWA P S+ D+F ESFR G  T 
Sbjct:    74 ----LSSYLDNEEPKLEDVLSKAATRDRTVVLTTLNAAWAAPGSVIDLFFESFRIGEETS 129

Query:   118 KLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLS 177
             ++LDHLV+VALD+KA   CL  H HC++L T G+DFS +EAYFMT SYL+MMW RI LL 
Sbjct:   130 QILDHLVIVALDAKAYSRCLELHKHCFSLVTEGVDFS-REAYFMTRSYLKMMWRRIDLLR 188

Query:   178 DVLAMGYNFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSN 237
              VL MGYNFVFTDAD++W +NPF RF   ADFQIACD + G S +L N PNGGFN+V+SN
Sbjct:   189 SVLEMGYNFVFTDADVMWFRNPFPRFYMYADFQIACDHYLGRSNDLHNRPNGGFNFVRSN 248

Query:   238 NRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPY 271
             NRTI FYK+WY SR  FPG HDQDVLN +K +P+
Sbjct:   249 NRTILFYKYWYASRLRFPGYHDQDVLNFLKAEPF 282

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

TAIR\|locus:4515102789 AT2G02061 "AT2G02061" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2156304 AT5G44820 "AT5G44820" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2119827 AT4G19970 "AT4G19970" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018783 AT1G28710 "AT1G28710" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018688 AT1G28700 "AT1G28700" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:1006230710 AT1G28695 "AT1G28695" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2164476 AT5G40900 "AT5G40900" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037273 RRA1 "REDUCED RESIDUAL ARABINOSE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037248 RRA2 "REDUCED RESIDUAL ARABINOSE 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		355
pfam03407		208	pfam03407, Nucleotid_trans, Nucleotide-diphospho-s	3e-59

>gnl\|CDD\|217539 pfam03407, Nucleotid_trans, Nucleotide-diphospho-sugar transferase	Back alignment and domain information

 Score =  189 bits (483), Expect = 3e-59
 Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 2/179 (1%)

Query: 118 KLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLS 177
            LL++L+VVALD +A   C    PH   L +   D S K+  F + +YL+M W R+RLL 
Sbjct: 1   GLLENLLVVALDEEAYKRCKELGPHICYLLSDVKDVSKKDFVFGSKTYLKMSWRRVRLLL 60

Query: 178 DVLAMGYNFVFTDADIVWLQNPFQRFD-PDADFQIACDRFSGNSFN-LRNEPNGGFNYVK 235
           ++L +GYNF+F+D D+VWL+NPF     PDAD  I+ D + G + + L+N  NGGF YV+
Sbjct: 61  ELLELGYNFIFSDVDVVWLRNPFPLLYLPDADIIISSDNYDGTTADGLKNWLNGGFFYVR 120

Query: 236 SNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQQKLLILDLHLRTGEILWS 294
             NR+I  +K W      +PGLHDQDV N +  +    ++  K   LD  L  G     
Sbjct: 121 PTNRSIALFKKWAERLLTYPGLHDQDVFNYLLREGAAGELGYKCRFLDTALFGGFCQSR 179

Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases. Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		355
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	100.0
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	98.07
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	97.76
PF05637		239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	97.75
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	97.48
PLN00176		333	galactinol synthase	97.38
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	97.21
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	97.06
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	96.13
PLN03181		453	glycosyltransferase; Provisional	95.78
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	95.66
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	95.08
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	94.54
PF03314		222	DUF273: Protein of unknown function, DUF273; Inter	94.4
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	93.28
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	93.06
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	90.72

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

Probab=100.00  E-value=3.9e-38  Score=288.26  Aligned_cols=188  Identities=28%  Similarity=0.523  Sum_probs=162.8

Q ss_pred             ccCCcEEEEEeChHHHHHhhhcCCcEEEecCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHcCCcEEEecccEEEcc
Q 018473          118 KLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTDADIVWLQ  197 (355)
Q Consensus       118 ~l~~nllVvAlD~~a~~~c~~~g~~C~~~~~~~~d~s~~~~~~gs~~f~~m~w~K~~~l~~vL~lGy~VLfsDvDVVWlR  197 (355)
                      ++++|++|+|+|+++++.|+++|++|+.......+.......||++.|.+++|.|+.+++.+|++||+|+|+|+||||+|
T Consensus         1 ~~~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~   80 (212)
T PF03407_consen    1 HLIDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLR   80 (212)
T ss_pred             CccccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEec
Confidence            36899999999999999999999999887754223333367899999999999999999999999999999999999999


Q ss_pred             Cccccc-CCCCCeEeecCCCCCCC-CCCCCCCCeeEEEEEeChhHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCCCC
Q 018473          198 NPFQRF-DPDADFQIACDRFSGNS-FNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKI  275 (355)
Q Consensus       198 nP~~~f-~~~aDi~is~D~~~g~~-~d~~~~~NtGf~yvR~T~~T~~f~~~W~~~r~~~p~~~DQ~vfN~ll~~~~~~~~  275 (355)
                      ||+++| ++++|+++++|...+.+ ...+..+|+||||+|||++|++|++.|.+.....++.+||.+||++++.......
T Consensus        81 dp~~~~~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~~~~~  160 (212)
T PF03407_consen   81 DPLPYFENPDADILFSSDGWDGTNSDRNGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQAARYG  160 (212)
T ss_pred             CcHHhhccCCCceEEecCCCcccchhhcCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcccCCc
Confidence            999999 89999999999887653 3345568999999999999999999999877777788999999999974333338


Q ss_pred             ceEEEEecccCc-CCc---c------------------cccccccccchhch
Q 018473          276 QQKLLILDLHLR-TGE---I------------------LWSCLRIRNHSHDH  305 (355)
Q Consensus       276 gl~v~~Ld~~~F-gG~---~------------------aNc~~G~~~Kv~dL  305 (355)
                      ++++++||+.+| +|.   +                  +|||.|.++|+++|
T Consensus       161 ~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~~~~p~~vH~n~~~g~~~K~~~~  212 (212)
T PF03407_consen  161 GLRVRFLPPSLFPNGHGYFCQSRDWAWVPTKNKPYIVHANCCDGKEGKRQRF  212 (212)
T ss_pred             CcEEEEeCHHHeeccccceeecchhhhhccccccceEEEcCCCChHhHHhhC
Confidence            999999999999 221   1                  89999999999875

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PLN03181 glycosyltransferase; Provisional	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		355
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	97.65
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	97.14
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	96.46
3tzt_A		276	Glycosyl transferase family 8; structural genomics	96.45

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

Probab=97.65  E-value=0.0004  Score=67.27  Aligned_cols=160  Identities=19%  Similarity=0.151  Sum_probs=89.3

Q ss_pred             EEEEccccccCCCchHHHHHHHhhhccCCcccCCcEEEEEeC---hHHHHHhhhcCCcEEEecCCCCCCCccccccccHH
Q 018473           88 IITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALD---SKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSS  164 (355)
Q Consensus        88 IlT~~N~ay~~p~s~lDlfLes~~~g~~t~~l~~nllVvAlD---~~a~~~c~~~g~~C~~~~~~~~d~s~~~~~~gs~~  164 (355)
                      |+.++|.+|. ++  .-..+.|++.. ++   -..++|+..|   ++..+.+++.+........-...... ......+.
T Consensus         7 vt~~~d~~Yl-~~--a~vl~~SL~~~-~s---~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~-~~~~~~~~   78 (333)
T 1ll2_A            7 VTLTTNDAYA-KG--ALVLGSSLKQH-RT---SRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSA-HLTLMKRP   78 (333)
T ss_dssp             EEEESSHHHH-HH--HHHHHHHHHHT-TC---CSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTT-HHHHHHCG
T ss_pred             EEEEeCHHHH-HH--HHHHHHHHHHh-CC---CCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchh-hccccccc
Confidence            3344688885 11  11245677652 22   1345555443   56677777777655444321111111 00010111


Q ss_pred             HHHHHHHHHHHHHHHHHcCC-cEEEecccEEEccCcccccCCCCCeEeecCCCCCCCCCCCCCCCeeEEEEEeChhHHHH
Q 018473          165 YLEMMWIRIRLLSDVLAMGY-NFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEF  243 (355)
Q Consensus       165 f~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRnP~~~f~~~aDi~is~D~~~g~~~d~~~~~NtGf~yvR~T~~T~~f  243 (355)
                      +...++.|..+.. +  ..| .||+.|+|++.++|+-+.|..+ .+...-|.  |    .+...|+|++.++++..+-  
T Consensus        79 ~~~~t~~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~-~~aAv~d~--~----~~~~fNsGvmlin~~~~~~--  146 (333)
T 1ll2_A           79 ELGVTLTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE-ELSAAPDP--G----WPDCFNSGVFVYQPSVETY--  146 (333)
T ss_dssp             GGHHHHHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC-SSEEEECS--S----STTSEEEEEEEECCCHHHH--
T ss_pred             chHHHHHHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC-ceeEEecC--C----CCcceeeeEEEEeCCHHHH--
Confidence            2245677776654 2  344 5999999999999998888554 33333342  1    1357999999999985443  


Q ss_pred             HHHHHHHHHcC--CCCCchHHHHHHHc
Q 018473          244 YKFWYNSRKMF--PGLHDQDVLNEIKF  268 (355)
Q Consensus       244 ~~~W~~~r~~~--p~~~DQ~vfN~ll~  268 (355)
                       +.+.+.....  -...||++||.+..
T Consensus       147 -~~l~~~~~~~~~~~~~DQ~~LN~~f~  172 (333)
T 1ll2_A          147 -NQLLHVASEQGSFDGGDQGLLNTFFN  172 (333)
T ss_dssp             -HHHHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred             -HHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence             3333322221  23589999999875

PyMOL of 1ll2

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		355
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	97.56
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	97.52

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=97.56  E-value=6.4e-05  Score=67.72  Aligned_cols=178  Identities=14%  Similarity=0.144  Sum_probs=93.3

Q ss_pred             EEEEccccccCCCchHHHHHHHhhhccCCcccCCcEEEEEe--ChHHHHHhhhc----CCcEEEecCCCCCCCc---ccc
Q 018473           88 IITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVAL--DSKALDHCLST----HPHCYALNTSGLDFSG---KEA  158 (355)
Q Consensus        88 IlT~~N~ay~~p~s~lDlfLes~~~g~~t~~l~~nllVvAl--D~~a~~~c~~~----g~~C~~~~~~~~d~s~---~~~  158 (355)
                      |+.++|.+|..   .+-..+.|++..  .+..--++.|++.  .++..+.+.+.    +..+...+....++..   ...
T Consensus         3 Iv~~~D~nY~~---~~~~~i~SL~~~--~~~~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   77 (282)
T d1ga8a_           3 IVFAADDNYAA---YLCVAAKSVEAA--HPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIR   77 (282)
T ss_dssp             EEEEECGGGHH---HHHHHHHHHHHH--CTTSCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGTTSCCCCT
T ss_pred             EEEECCHHHHH---HHHHHHHHHHHH--CcCCCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhcccccccc
Confidence            56678999852   122345666531  1111123444443  34444555443    4444333321111211   011


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHcCCc-EEEecccEEEccCcccccC---CCCCeEeecCCCCCCC---------CCCCC
Q 018473          159 YFMTSSYLEMMWIRIRLLSDVLAMGYN-FVFTDADIVWLQNPFQRFD---PDADFQIACDRFSGNS---------FNLRN  225 (355)
Q Consensus       159 ~~gs~~f~~m~w~K~~~l~~vL~lGy~-VLfsDvDVVWlRnP~~~f~---~~aDi~is~D~~~g~~---------~d~~~  225 (355)
                      .+     ..+++.|. ++-++|. +|+ +|+.|+|++-++|+-+.+.   .+.-+....|......         .+...
T Consensus        78 ~~-----s~~~y~Rl-~l~~~lp-~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~  150 (282)
T d1ga8a_          78 HI-----SITTYARL-KLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEY  150 (282)
T ss_dssp             TC-----CGGGGGGG-GHHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSC
T ss_pred             cc-----CHHHHHHH-HHhhhCC-ccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhhhHHHhCCCCCCc
Confidence            22     23334464 3556665 564 9999999999999988774   3445666556432110         12235


Q ss_pred             CCCeeEEEEEe-----ChhHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCCCCceEEEEecccC
Q 018473          226 EPNGGFNYVKS-----NNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQQKLLILDLHL  286 (355)
Q Consensus       226 ~~NtGf~yvR~-----T~~T~~f~~~W~~~r~~~p~~~DQ~vfN~ll~~~~~~~~gl~v~~Ld~~~  286 (355)
                      ..|+|+|.+-.     ..-+.++++ |.+.....-...||++||.+++.        ++..||..+
T Consensus       151 yfNsGVml~n~~~~r~~~~~~~~~~-~~~~~~~~~~~~DQd~LN~~f~~--------~~~~L~~~~  207 (282)
T d1ga8a_         151 YFNAGVLLINLKKWRRHDIFKMSSE-WVEQYKDVMQYQDQDILNGLFKG--------GVCYANSRF  207 (282)
T ss_dssp             CEEEEEEEECHHHHTTSCHHHHHHH-HHHHHTTTCSSTHHHHHHHHHTT--------SEEEECGGG
T ss_pred             eeecceeeechhhhhhhhHHHHHHH-HHHhcccCcccCchhHHHHHhcC--------CEEeCCHHH
Confidence            58999999832     222344443 33322222346899999998842        356676554

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure