Citrus Sinensis ID: 018500

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MYLFSEEMKKSGVNNNNNNNNTSAEEHSDTFPSPGAPKGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEVSNFYSLA
Secondary Structure (PSIPRED)
cccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHccccccEEEccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEcccccccccccccccHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MYLFSEEMKksgvnnnnnnnntsaeehsdtfpspgapkgwsservphptsssrrhisaasltpfysgralpskwedaerwicspvsgyglgltnknslhsqfqrrpksksgpivpppprmhnsiyspstgmqvldggrvknfvagspfstgVLVADRisgnfygqgfllhngsyaarsrtsnvpgsgwsdlasddsspssqdeklddipdaEAVVSRVVSrrdmatqmspesstnssprgkssfspaVRSVAElqndhpaklevrevqidkgsttiswskrhrsrriksgfpdvdkfyqnvtgtcapsldLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEvsnfysla
Flexible Loop (DISEMBL)
MYLFSEEMKKSGVNNNNNNNNTSAEEHSDTFPSPGAPKGWSSERVPHptsssrrhisaasltpfySGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSqfqrrpksksgpivpppprMHNSIYSPSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSpssqdeklddipdaEAVVSRVVsrrdmatqmspesstnssprgkSSFSPAVRSVAelqndhpaklevrevqidkgsttiswskrhrsrriksgfpdvdkfyQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAirklevsnfysla
Low Complexity Region (SEG)
MYLFSEEMKKSGVnnnnnnnnTSAEEHSDTFPSPGAPKGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWsdlasddsspssqdEKLDDIPDAEAvvsrvvsrrDMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEVSNFYSLA
Disordered region (IsUnstruct)
*************************************************************TPFYSGRALPSKWEDAERWICSPVSGYGLGLT**************************************QVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYA******************************************************************************************************************GFPDVDKFYQNVTGTCAPSLDLSEVAASISKL****AKITAWENLQRAKAEAAIRKL*********
Disordered Region (DISOPRED)
**************************************************************************EDAERW************************************************************************************************************************************************************************************************ST*********************************SLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEVSNFYSLA
Disordered Region (DISEMBL)
*********KSGVNNNNNNNN***********************************SAASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNS**************PIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGW******************DIPDAEAVVSRVVSRR************************AVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEVSNFYSLA
Disordered Region (DISPRO)
********K*S******************************************************SGRALPSKWEDAERWICSPV********************************************GMQV***GRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLH****************************************************************************************PAKLEVREVQIDKGSTTISWSK***************************SLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEVSNFYSLA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLFSEEMKKSGVNNNNNNNNTSAEEHSDTFPSPGAPKGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEVSNFYSLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
224081653	391	predicted protein [Populus trichocarpa]	0.847	0.769	0.560	8e-81
255565198	386	DNA binding protein, putative [Ricinus c	0.853	0.784	0.603	3e-80
225438720	402	PREDICTED: uncharacterized protein LOC10	0.892	0.788	0.515	8e-78
296082419	441	unnamed protein product [Vitis vinifera]	0.921	0.741	0.524	2e-77
147768915	556	hypothetical protein VITISV_004452 [Viti	0.861	0.550	0.498	7e-72
359492027	570	PREDICTED: uncharacterized protein LOC10	0.861	0.536	0.495	7e-72
224136784	409	predicted protein [Populus trichocarpa]	0.870	0.755	0.502	3e-71
441481995	565	remorin-1 protein [Dimocarpus longan]	0.898	0.564	0.471	1e-65
255538278	601	DNA binding protein, putative [Ricinus c	0.887	0.524	0.489	4e-65
224067258	578	predicted protein [Populus trichocarpa]	0.836	0.513	0.478	1e-63

>gi|224081653|ref|XP_002306470.1| predicted protein [Populus trichocarpa] gi|222855919|gb|EEE93466.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (785), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 184/328 (56%), Positives = 215/328 (65%), Gaps = 27/328 (8%)

Query: 31  FPSPGAP-----KGWSSERVPHPTSSS-RRHISAASLTPFYSGRALPSKWEDAERWICSP 84
           FPSPG       KGWSSER+PHP+S S RRHISA  LTPFYSGRALPSKWEDAERWICSP
Sbjct: 14  FPSPGGARYQENKGWSSERIPHPSSGSGRRHISA--LTPFYSGRALPSKWEDAERWICSP 71

Query: 85  VSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVA 144
           V GYG+      S      RR KSKSGPI  PP   +    SPS G  V+DGG  +NF+ 
Sbjct: 72  VLGYGVA----KSSQCHPLRRAKSKSGPINLPPGIGYYHNCSPSMG--VIDGGIGRNFMV 125

Query: 145 GSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVP----GSGWSDLASDDSSPSS 200
            SPFSTGVL+ +         G   H           +V         SDLAS+ SS SS
Sbjct: 126 NSPFSTGVLMPN---------GVGAHCSGSGGGGGQGHVERLASALSRSDLASEPSSSSS 176

Query: 201 QDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPA 260
           QDE+ + + D    V R++SRRDMATQMSPE ST+SS RG+SS  P+   V E Q+DHPA
Sbjct: 177 QDERPEGVDDGNNTVDRIISRRDMATQMSPEGSTHSSCRGRSSSPPSTDPVLEPQSDHPA 236

Query: 261 KLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISK 320
           KLE+REVQ+DK +T I WSKR  SRRIK G PDV++F  N     + S D+SE  +  SK
Sbjct: 237 KLEIREVQVDKRATVIRWSKRPGSRRIKRGQPDVEEFNPNAADAHSSSWDISEEVSDFSK 296

Query: 321 LQREEAKITAWENLQRAKAEAAIRKLEV 348
           LQREEAKITAWENLQ+A+AEAAIRKLE+
Sbjct: 297 LQREEAKITAWENLQKARAEAAIRKLEM 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565198|ref|XP_002523591.1| DNA binding protein, putative [Ricinus communis] gi|223537153|gb|EEF38786.1| DNA binding protein, putative [Ricinus communis]

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 231/323 (71%), Gaps = 20/323 (6%)

Query: 30  TFPSPGA----PKGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERWICSPV 85
           TFPSPGA     KGW SERVPHP+ SSRRHISA  LTPFYSGR +PSKWEDAERWICSPV
Sbjct: 13  TFPSPGAGNFQEKGWCSERVPHPSGSSRRHISA--LTPFYSGRTMPSKWEDAERWICSPV 70

Query: 86  SGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVAG 145
            GYG+    K S     QRRPKSKSGPIV P    +++  SPS  MQV+D   V+NF+A 
Sbjct: 71  LGYGV---TKYSQCLHHQRRPKSKSGPIVSPGIAYYSNC-SPS--MQVVDSSSVRNFIAN 124

Query: 146 SPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKL 205
           SPFSTGVL+   +  ++ G G  +   +  ARS    V G GWSDL S+ SSPSSQDEK+
Sbjct: 125 SPFSTGVLMPKGLVPHYNGGG--IGGQTIVARS----VSGPGWSDLPSESSSPSSQDEKV 178

Query: 206 DDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVR 265
           D I DAE  V+RV+SRRDMATQMSPE ST SSPR +SS  P++  V   Q+DHPAKLE+R
Sbjct: 179 DGINDAENTVTRVISRRDMATQMSPEGSTCSSPRERSSSPPSIPPVE--QSDHPAKLEIR 236

Query: 266 EVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREE 325
           EVQ+DK +T +S + RH SRR K G PDV    QN + +     ++SE ++  SKLQREE
Sbjct: 237 EVQVDKRATLVSRTTRHGSRRSKKGLPDVQDINQNASDSRISLWNVSEASSEFSKLQREE 296

Query: 326 AKITAWENLQRAKAEAAIRKLEV 348
           AKITAWENLQ+AKAEAAIRKLE+
Sbjct: 297 AKITAWENLQKAKAEAAIRKLEM 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438720|ref|XP_002282548.1| PREDICTED: uncharacterized protein LOC100252502 [Vitis vinifera]

 Score =  296 bits (759), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 185/359 (51%), Positives = 234/359 (65%), Gaps = 42/359 (11%)

Query: 8   MKKSGVNNNNNNNNTSAEEHSDTFPSPG----------APKGWSSERVPHPTSSSRRHIS 57
           MKKS V ++N            +FPSPG           PKGWSSERVP   +S RR+I 
Sbjct: 1   MKKSAVTSHNLG----------SFPSPGTSNYGDGSGGVPKGWSSERVPPSVNSGRRYIG 50

Query: 58  AASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPP 117
            ++L PF SGRALPSKWEDAERWI SPVSGY +   NK+SL +Q QRRPKSKSGP+  P 
Sbjct: 51  GSTLMPFNSGRALPSKWEDAERWISSPVSGYSV---NKSSL-AQPQRRPKSKSGPLGLPG 106

Query: 118 PRMHNSIYSPSTGMQVLDGGRVKNFVA-GSPFSTGVLVADRISGNFYGQGFLLHNGSYA- 175
              +N  YSP+  M V DGG V+NF+   SPFSTGV+VA+ +S + YG G    NG    
Sbjct: 107 -VAYNPNYSPA--MPVFDGGGVRNFMGPSSPFSTGVMVAEGLSLH-YGAG----NGGQPH 158

Query: 176 ------ARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMS 229
                 +  R+ ++PG  WSD  S+ SSP+SQDEKL    DAE +VS VVSRRD+ATQMS
Sbjct: 159 PVPNEHSMERSISIPG--WSDFLSESSSPNSQDEKLGGSKDAETMVSPVVSRRDIATQMS 216

Query: 230 PESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKS 289
           P+S+T+SSP+ + SF P+       Q  H  K EVR+VQ+DKG T I WSK+H ++    
Sbjct: 217 PDSNTHSSPKDRFSFPPSPLLPTLEQQTHSVKSEVRDVQVDKGVTMIRWSKKHGAKTTMR 276

Query: 290 GFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEV 348
             PDV++  +N     A S D++E + +I KL+REEAKITAWENLQ+AKAEAAI+KLE+
Sbjct: 277 APPDVEETDKNAAEAQASSWDIAEPSKNILKLKREEAKITAWENLQKAKAEAAIQKLEM 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082419|emb|CBI21424.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 183/349 (52%), Positives = 233/349 (66%), Gaps = 22/349 (6%)

Query: 8   MKKSGVNNNNNNNNTSAEEHSDTFPSPGAPKGWSSERVPHPTSSSRRHISAASLTPFYSG 67
           MKKS V ++N  +  S    +    S G PKGWSSERVP   +S RR+I  ++L PF SG
Sbjct: 57  MKKSAVTSHNLGSFPSPGTSNYGDGSGGVPKGWSSERVPPSVNSGRRYIGGSTLMPFNSG 116

Query: 68  RALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSP 127
           RALPSKWEDAERWI SPVSGY +   NK+SL +Q QRRPKSKSGP+  P    +N  YSP
Sbjct: 117 RALPSKWEDAERWISSPVSGYSV---NKSSL-AQPQRRPKSKSGPLGLPG-VAYNPNYSP 171

Query: 128 STGMQVLDGGRVKNFVA-GSPFSTGVLVADRISGNFYGQGFLLHNGSYA-------ARSR 179
           +  M V DGG V+NF+   SPFSTGV+VA+ +S + YG G    NG          +  R
Sbjct: 172 A--MPVFDGGGVRNFMGPSSPFSTGVMVAEGLSLH-YGAG----NGGQPHPVPNEHSMER 224

Query: 180 TSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPR 239
           + ++PG  WSD  S+ SSP+SQDEKL    DAE +VS VVSRRD+ATQMSP+S+T+SSP+
Sbjct: 225 SISIPG--WSDFLSESSSPNSQDEKLGGSKDAETMVSPVVSRRDIATQMSPDSNTHSSPK 282

Query: 240 GKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQ 299
            + SF P+       Q  H  K EVR+VQ+DKG T I WSK+H ++      PDV++  +
Sbjct: 283 DRFSFPPSPLLPTLEQQTHSVKSEVRDVQVDKGVTMIRWSKKHGAKTTMRAPPDVEETDK 342

Query: 300 NVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEV 348
           N     A S D++E + +I KL+REEAKITAWENLQ+AKAEAAI+KLE+
Sbjct: 343 NAAEAQASSWDIAEPSKNILKLKREEAKITAWENLQKAKAEAAIQKLEM 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768915|emb|CAN66979.1| hypothetical protein VITISV_004452 [Vitis vinifera]

 Score =  277 bits (708), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 167/335 (49%), Positives = 217/335 (64%), Gaps = 29/335 (8%)

Query: 30  TFPSPGAP----------KGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAER 79
           TFPSPG P          KGWSSERVP  T+ +RRH+SAA L PF +GR LPSKWEDAER
Sbjct: 226 TFPSPGTPNYRHSNFGIQKGWSSERVPSHTNVNRRHVSAA-LLPFNNGRTLPSKWEDAER 284

Query: 80  WICSPVSGYGLGLTNKNSLHSQF---QRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDG 136
           WI SPV+G G+       +   F   QRRPKSKSGP+  PP   + S+YSP+  M   +G
Sbjct: 285 WIFSPVAGDGV-------VKPSFPPPQRRPKSKSGPL-GPPGIAYYSLYSPAIPM--FEG 334

Query: 137 GRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDS 196
           G   NF+AGSPFS GV+  D ++ +  G+G ++   +     R+++V   G S+L +  S
Sbjct: 335 GNAGNFMAGSPFSAGVIAPDGLAIHCGGRGGVMPVRTEPCMGRSASV--HGCSELLNQSS 392

Query: 197 SPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPA---VRSVAE 253
              S+DEK D + DA   +SR VSRRD+ATQMSPE S  SSP  K SFSP+   V  + E
Sbjct: 393 LRDSRDEKFDGVKDAATDISRTVSRRDIATQMSPEGSIFSSPERKPSFSPSSPTVLPIVE 452

Query: 254 LQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSE 313
           LQ+ + +KLE+R+VQ+D+  T   WSK+HR R    G  +VD + +      + + ++SE
Sbjct: 453 LQSVNSSKLEIRDVQVDERVTMTRWSKKHRGRIPGKGSENVDGWKKKAVEAHSSAWEVSE 512

Query: 314 VAASISKLQREEAKITAWENLQRAKAEAAIRKLEV 348
            A SISK++REEAKITAWENLQ+AKAEAAIRKLEV
Sbjct: 513 TAKSISKVKREEAKITAWENLQKAKAEAAIRKLEV 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492027|ref|XP_002282806.2| PREDICTED: uncharacterized protein LOC100257562 [Vitis vinifera] gi|302142306|emb|CBI19509.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (707), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 166/335 (49%), Positives = 217/335 (64%), Gaps = 29/335 (8%)

Query: 30  TFPSPGAP----------KGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAER 79
           TFPSPG P          KGWSSERVP  T+ +RRH+SAA L PF +GR LPSKWEDAER
Sbjct: 182 TFPSPGTPNYRHSNFGIQKGWSSERVPSHTNVNRRHVSAA-LLPFNNGRTLPSKWEDAER 240

Query: 80  WICSPVSGYGLGLTNKNSLHSQF---QRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDG 136
           WI SPV+G G+       +   F   QRRPKSKSGP+ PP    + S+YSP+  M   +G
Sbjct: 241 WIFSPVAGDGV-------VKPSFPPPQRRPKSKSGPLGPPGIAYY-SLYSPAIPM--FEG 290

Query: 137 GRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDS 196
           G   NF+AGSPFS GV+  D ++ +  G+G ++   +     R+++V   G S+L +  S
Sbjct: 291 GNAGNFMAGSPFSAGVIAPDGLAIHCGGRGGVMPVRTEPCMGRSASV--HGCSELLNQSS 348

Query: 197 SPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPA---VRSVAE 253
              S+DEK D + DA   +SR VSRRD+ATQMSPE S  SSP  K SFSP+   V  + E
Sbjct: 349 LRDSRDEKFDGVKDAATDISRTVSRRDIATQMSPEGSIFSSPERKPSFSPSSPTVLPIVE 408

Query: 254 LQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSE 313
           LQ+ + +KLE+R+VQ+D+  T   WSK+HR R    G  +VD + +      + + ++SE
Sbjct: 409 LQSVNSSKLEIRDVQVDERVTMTRWSKKHRGRIPGKGSENVDGWKKKAVEAHSSAWEVSE 468

Query: 314 VAASISKLQREEAKITAWENLQRAKAEAAIRKLEV 348
            A SISK++REEAKITAWENLQ+AKAEAAIRKLE+
Sbjct: 469 TAKSISKVKREEAKITAWENLQKAKAEAAIRKLEM 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136784|ref|XP_002326944.1| predicted protein [Populus trichocarpa] gi|222835259|gb|EEE73694.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 173/344 (50%), Positives = 216/344 (62%), Gaps = 35/344 (10%)

Query: 28  SDTFPSPGAP-------------KGWSSERVPHPTSSSRRHI---SAASLTPFYS-GRAL 70
           S TFPSPG P             KGWSSERVP P +S+RR +   + A++ P+ + GR L
Sbjct: 12  SGTFPSPGTPNYLNQYHSSVGMQKGWSSERVPLPNNSNRRQVMNTTGAAVLPYNNNGRTL 71

Query: 71  PSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTG 130
           PSKWEDAERWI SPVSG G+    ++S+    QRRPKSKSGP+  PP   + S+YSP  G
Sbjct: 72  PSKWEDAERWIFSPVSGDGV---VRSSIQPA-QRRPKSKSGPL-GPPGVAYYSLYSP--G 124

Query: 131 MQVLDGGRVKNFVAGSPFSTGVLVADRI---SGNFYGQGFLLHNGSYAARSRTSNVPGSG 187
           MQV DGG   NFVAGSPFS GV+ AD +   S   +G  F +      ARS    V   G
Sbjct: 125 MQVFDGGNAGNFVAGSPFSAGVIAADGLGIRSHGSHGVSFPMRTEPCMARS----VSVHG 180

Query: 188 WSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFS-- 245
            S++ +  S PS QDEKLD + DA   +SRVVSRRDMATQMSP  S +SSP  K SFS  
Sbjct: 181 CSEMVAQSSLPS-QDEKLDGVKDAATDISRVVSRRDMATQMSPVGSNHSSPTRKPSFSTS 239

Query: 246 -PAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGT 304
            P+V  + ELQ+   ++ E R+VQ+D+  T   WSK+HR+R        VD + +    T
Sbjct: 240 TPSVLPIVELQSVPSSRSETRDVQVDERVTVTRWSKKHRARNHGKSSQVVDDWRKKAADT 299

Query: 305 CAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEV 348
            +   D+SE   SISK++REEAKITAWENLQ+AKAEA IRKLE+
Sbjct: 300 LSSGWDVSEAGKSISKVKREEAKITAWENLQKAKAEAEIRKLEM 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|441481995|gb|AGC39092.1| remorin-1 protein [Dimocarpus longan]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 163/346 (47%), Positives = 209/346 (60%), Gaps = 27/346 (7%)

Query: 17  NNNNNTSAEEHSDTFPSPGAP----------KGWSSERVPHPTSSSRRHISAASLTPFYS 66
           N   +++    S TFPSPG P          KGWSSERVP  T+ +RR + AA L P  +
Sbjct: 166 NMKKSSNLSRKSSTFPSPGTPNYRQANVGMQKGWSSERVPLQTAGNRRQVGAA-LLPLNN 224

Query: 67  GRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYS 126
           GR LPSKWEDAERWI SPV+G G G+      +   QRRPKSKSGP+ PP    + S+YS
Sbjct: 225 GRTLPSKWEDAERWILSPVAGDG-GVRQS---YVAPQRRPKSKSGPLGPPGV-AYYSLYS 279

Query: 127 PSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNF--YGQGFLLHNGSYAARSRTSNVP 184
           P+  M   DGG V NF+ GSPF+ GVL  D +  N   +G  F L      ARS + +  
Sbjct: 280 PAVPM--FDGGNVGNFMVGSPFTAGVLAPDGLGINSGDHGGAFPLRMEPCMARSASVH-- 335

Query: 185 GSGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGK--S 242
             G S++ +  S PS  DEK+D   DA   +SR +SRRDMATQMSPE ST+SSP  +  S
Sbjct: 336 --GCSEVLNQPSLPS-HDEKIDGSRDAATDISRTISRRDMATQMSPEGSTHSSPERRPFS 392

Query: 243 SFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVT 302
             +P+   + ELQ    +K EVR+VQ+D   T   WSK+HRSR        VD + +   
Sbjct: 393 VSTPSALPIVELQGVQSSKSEVRDVQVDDRVTMTRWSKKHRSRISGKSSEIVDDWRKKAL 452

Query: 303 GTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEV 348
            T   S D+++   +ISK++REE +ITAWENLQ+AKAEAAIRKLE+
Sbjct: 453 DTRTSSWDITDSTKTISKVKREELRITAWENLQKAKAEAAIRKLEM 498

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538278|ref|XP_002510204.1| DNA binding protein, putative [Ricinus communis] gi|223550905|gb|EEF52391.1| DNA binding protein, putative [Ricinus communis]

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 169/345 (48%), Positives = 216/345 (62%), Gaps = 30/345 (8%)

Query: 22  TSAEEHSDTFPSPGAP----------KGWSSERVP-HPTSSSRRHISAASLTPFY-SGRA 69
           T++   S TFPSPG P          KGWSSERVP H  S++RR  + A+ +    +GR 
Sbjct: 202 TTSSRKSGTFPSPGTPNYRHASVGMQKGWSSERVPLHNLSNNRRQQANANASLLLPNGRT 261

Query: 70  LPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPST 129
           LPSKWEDAERWI SPVSG G G+  + S++   QRRPKSKSGP+ PP    + S+YSP+ 
Sbjct: 262 LPSKWEDAERWIFSPVSGDG-GM--RTSINQVPQRRPKSKSGPLGPPGIAYY-SLYSPA- 316

Query: 130 GMQVLDGGRVKNFV-AGSPFSTGVLVADRIS--GNFYGQGFLLHNGSYAARSRTSNVPGS 186
            M V DGG + NF+ A SPFS GV+ AD +    N  G  F +      ARS    V   
Sbjct: 317 -MPVFDGGNMGNFMSASSPFSAGVIAADGLGMRSNGNGVAFPVRTEPCMARS----VSVH 371

Query: 187 GWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFS- 245
           G S++    SS +SQDEKLD + DA   +S  VSRRDMATQMSPE S +SSP  ++SFS 
Sbjct: 372 GCSEVLPQSSS-ASQDEKLDGVKDAATDLS-SVSRRDMATQMSPEGSNHSSPSMRTSFSA 429

Query: 246 --PAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTG 303
             P++  + E+Q+ H +K +VR+VQ+D+  T   WSK+HRSR        VD + +    
Sbjct: 430 STPSILPIVEVQSVHTSKSQVRDVQVDERVTVTRWSKKHRSRNQGKNSEIVDDWRKKSVD 489

Query: 304 TCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEV 348
             +   D+SE A  ISK +REEAKITAWENLQ+AKAEAAIRKLE+
Sbjct: 490 ARSSPWDVSEAAKCISKAKREEAKITAWENLQKAKAEAAIRKLEM 534

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067258|ref|XP_002302434.1| predicted protein [Populus trichocarpa] gi|222844160|gb|EEE81707.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 167/349 (47%), Positives = 210/349 (60%), Gaps = 52/349 (14%)

Query: 28  SDTFPSPGAP---------KGWSSERVPHPTSSSRRHI---SAASLTPF-------YSGR 68
           S TFPSPG P         KGWSSERVP P +S+RR +   +AA+++PF        +GR
Sbjct: 185 SGTFPSPGTPNYHSSAGMQKGWSSERVPLPNNSNRRQVMNATAAAVSPFNNNTNNNNNGR 244

Query: 69  ALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPS 128
            LPSKWEDAERWI SPVSG G     ++S+    QRRPKSKSGP+ PP    + S+YSP 
Sbjct: 245 PLPSKWEDAERWIFSPVSGDGFV---RSSIQPA-QRRPKSKSGPLGPPGVAYY-SLYSP- 298

Query: 129 TGMQVLDGGRVKNFVAGSPFSTGVLVADRI---SGNFYGQGFLLHNGSYAARSRTSNVPG 185
             +QV DG  + NF+AGSPFS  V+ AD +   S   +G  F +      ARS    V  
Sbjct: 299 -AIQVFDGRNMGNFIAGSPFSASVIAADGLAVKSNGSHGVAFPMRTEPCMARS----VSV 353

Query: 186 SGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFS 245
            G S++ +  S P SQDEKLD + DA   +SR VSRRDMATQMSPE S +SSP  + SFS
Sbjct: 354 HGCSEMLAQSSLP-SQDEKLDGVKDAATDISRAVSRRDMATQMSPEGSNHSSPTRQPSFS 412

Query: 246 ---PAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVT 302
              P+  ++ ELQ  + +K EVR+VQ+D+  T   WSK+HR+R        VD       
Sbjct: 413 VSTPSSLAIVELQGFNSSKSEVRDVQVDERVTVTRWSKKHRARNHGKSSEIVD------- 465

Query: 303 GTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEVSNF 351
                  D  E AA  + ++REEAKITAWENLQ+AKAEA +RKLEV  F
Sbjct: 466 -------DWREEAAD-ALVKREEAKITAWENLQKAKAEAELRKLEVLFF 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2115085	427	AT4G36970 "AT4G36970" [Arabido	0.870	0.723	0.472	1.6e-56
TAIR|locus:1005716683	555	AT1G45207 "AT1G45207" [Arabido	0.850	0.544	0.366	1.5e-37
TAIR|locus:2051673	486	AT2G02170 "AT2G02170" [Arabido	0.338	0.246	0.304	5.9e-08
TAIR|locus:2008625	347	AT1G67590 "AT1G67590" [Arabido	0.346	0.354	0.281	9.9e-08
TAIR|locus:2204197	509	AT1G30320 "AT1G30320" [Arabido	0.332	0.231	0.272	5.8e-07
TAIR|locus:2197081	442	AT1G53860 "AT1G53860" [Arabido	0.214	0.171	0.382	2.8e-05

TAIR|locus:2115085 AT4G36970 "AT4G36970" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 170/360 (47%), Positives = 198/360 (55%)

Query:    22 TSAEEHS-DTFPSPGAP-----KGWSSERVPHP---TSSS-----RRHI--SAASLTPFY 65
             TS   +S   F SPGAP     KGWSSERVPHP   TSSS     RRHI  S+A  TPFY
Sbjct:     4 TSVSSNSFGGFLSPGAPSYADNKGWSSERVPHPSSTTSSSAINGGRRHIGSSSALTTPFY 63

Query:    66 SGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPP-PRMHNSI 124
             SGRA+PSKWEDAERWICSPVS Y  G+   +S+ S+ QRR KSKSGPIVPP  P  H + 
Sbjct:    64 SGRAIPSKWEDAERWICSPVSTYPQGVCLNSSVSSE-QRRQKSKSGPIVPPTLPHPHPTS 122

Query:   125 YSPSTG---------MQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYA 175
              S +TG         M+ +D       VAGSPFSTGVL ADR+   F G    +  G   
Sbjct:   123 SSSATGCYHYSPRMMMRSMDAPPKGLMVAGSPFSTGVLEADRV---FRGS---VGGGGCD 176

Query:   176 ARSRTSNVPGSGWXXX--XXXXXXXXXXXEKLDDIPDAE---AXXXXXXXXXDMATQMSP 230
                R    PG G                  K D    AE   A         DMATQMSP
Sbjct:   177 GYGRG---PGHGHSRSWVDLMSEETSSLSSKTDTEEKAEMTTAMQSPVVSRRDMATQMSP 233

Query:   231 ESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRH--RSRRIK 288
             E +   SP   +   P V SV E     P + EVREV++DKG+  I   KR    SR I+
Sbjct:   234 EET---SPNNNNQSPPLVVSVIE---PPPCRGEVREVKMDKGARMIKRPKRRVMSSRIIR 287

Query:   289 SGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEV 348
                P+V+    +     + S D+SE A ++SKLQREEAKI AWENLQ+AKAEAAIRKLEV
Sbjct:   288 REQPEVED--NSEASASSSSWDISEPAMTLSKLQREEAKIAAWENLQKAKAEAAIRKLEV 345

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:1005716683 AT1G45207 "AT1G45207" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 124/338 (36%), Positives = 163/338 (48%)

Query:    28 SDTFPSPGAP-------KGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERW 80
             S  FPSPG P       KGWSSERVP  ++  R   +A  L P YSGR +PSKWEDAERW
Sbjct:   181 SSVFPSPGTPTYLHSMQKGWSSERVPLRSNGGRSPPNAGFL-PLYSGRTVPSKWEDAERW 239

Query:    81 ICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVK 140
             I SP++  G   T+  + H   +RRPK+KSGP+  PP   + S+YSP+  M  + GG + 
Sbjct:   240 IVSPLAKEGAARTSFGASH---ERRPKAKSGPL-GPPGFAYYSLYSPAVPM--VHGGNMG 293

Query:   141 NFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWXXXXXXXXXXXX 200
                A SPFS GVL     S       F        ARS    V   G             
Sbjct:   294 GLTASSPFSAGVLPETVSSRGSTTAAFPQRIDPSMARS----VSIHGCSETLASSSQDDI 349

Query:   201 XXEKLDDIPDAEAXXXXXXXXXDMATQMSPESSTNSSPRGKSSFSPAVRS---VAELQND 257
                  D   DA+A         DMATQMSPE S   SP  + SFSP+  S   ++EL N 
Sbjct:   350 HESMKDAATDAQAVSRR-----DMATQMSPEGSIRFSPERQCSFSPSSPSPLPISELLNA 404

Query:   258 HPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLS---EV 314
             H  + EV+++Q+D+  T   WSK+HR     +G     K   +V G      DL+   E 
Sbjct:   405 HSNRAEVKDLQVDEKVTVTRWSKKHRGLYHGNG----SKMRDHVHGKATNHEDLTCATEE 460

Query:   315 AASIS--KLQREEAKITAWENLQRAKAEAAIRKLEVSN 350
             A  IS   LQ+ +A+  A   L++   +  + K   S+
Sbjct:   461 ARIISWENLQKAKAE-AAIRKLEKYFPQMKLEKKRSSS 497

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2051673 AT2G02170 "AT2G02170" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
 Identities = 38/125 (30%), Positives = 65/125 (52%)

Query:   229 SPESSTNSSPRGKSSFSP-AVRSVAELQNDHPAKLEVREVQIDKGSTTIS-W-SKRHRSR 285
             SP SS  SSP  ++S SP + + ++E +     + E+  +    G   I+ W SK    +
Sbjct:   295 SPISSEPSSPGRQASASPMSNKELSEKELQMKTRREIMVLGTQLGKFNIAAWASKEDEDK 354

Query:   286 RIKSGFPDVDKFY--QNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAI 343
                +           ++V+   A + + +E A  +++ +REE KI AWEN Q+AK+EA +
Sbjct:   355 DASTSLKTKASLQTSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEM 414

Query:   344 RKLEV 348
             +K EV
Sbjct:   415 KKTEV 419

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008625 AT1G67590 "AT1G67590" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
 Identities = 36/128 (28%), Positives = 60/128 (46%)

Query:   223 DMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRH 282
             DM T+M+P  S    P   ++   A   V       P +   R   +     T++  +R 
Sbjct:   151 DMGTEMTPIGS--QEPSRTATPVRATTPVGRSPVTSPVRASQRGEAVGVVMETVTEVRRV 208

Query:   283 RSRRIK--SGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAE 340
              S   +  +GF +  K    +    A + D +E A  +++ +REE KI AWEN ++ KAE
Sbjct:   209 ESNNSEKVNGFVESKKAMSAMEAR-AMAWDEAERAKFMARYKREEVKIQAWENHEKRKAE 267

Query:   341 AAIRKLEV 348
               ++K+EV
Sbjct:   268 MEMKKMEV 275

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204197 AT1G30320 "AT1G30320" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
 Identities = 34/125 (27%), Positives = 64/125 (51%)

Query:   229 SPESSTNSSPRG----KSSFSPAVR-SVAELQNDHPAKLEVREVQIDKGSTTIS-WSKRH 282
             SP SS  S+PRG    +SS S   R  ++E +     + E+  + +  G   I+ W+ + 
Sbjct:   317 SPTSSLPSTPRGGQPEESSMSKNTRRELSEEEEKAKTRREIVALGVQLGKMNIAAWASKE 376

Query:   283 RSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAA 342
                  K+   D ++  +      A + + +E +   ++ +REE +I AWE+ ++AK EA 
Sbjct:   377 EEENKKNN-GDAEEAQKIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAE 435

Query:   343 IRKLE 347
             +R++E
Sbjct:   436 MRRIE 440

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2197081 AT1G53860 "AT1G53860" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
 Identities = 31/81 (38%), Positives = 40/81 (49%)

Query:   273 STTISWSKRHRSRR-IKSGFPDVD---KFYQNVTGTCAPSLDLSEVAASI-SKLQREEAK 327
             S T  W+ R      I       D   +  ++V+ + AP  D  +       + QREEAK
Sbjct:   289 SVTSHWNSREEEEEEISKSLRHFDMESELRRSVSESKAPLWDDEDDKIKFCQRYQREEAK 348

Query:   328 ITAWENLQRAKAEAAIRKLEV 348
             I AW NL+ AKAEA  RKLEV
Sbjct:   349 IQAWVNLENAKAEAQSRKLEV 369

GO:0003677 "DNA binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	4e-12

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 22/44 (50%), Positives = 31/44 (70%)

Query: 306 APSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEVS 349
           A + + +E A   +K QREEAKI AWEN ++AKAEA ++K+E  
Sbjct: 10  ADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERK 53

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	99.65

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=99.65  E-value=5.3e-17  Score=137.16  Aligned_cols=55  Identities=42%  Similarity=0.487  Sum_probs=52.3

Q ss_pred             cccccccCCcchhhhhhhhhhHhhhhHhHHHHHHHhHHHHHHHHHHHHHHhhccc
Q 018500          299 QNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEVSNFYS  353 (355)
Q Consensus       299 k~~~esra~AWeeaEkaK~~~r~~rEEakI~AWEn~qKAKaEA~mrKlE~Kl~~~  353 (355)
                      ++.+++++.+||++|++|+++||+|+|++|++|||+||+||||+|+|+|+|||..
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkk   56 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKK   56 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999864

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 55/400 (13%), Positives = 107/400 (26%), Gaps = 134/400 (33%)

Query: 23  SAEEHSDTFPSPGAPKG-----WSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDA 77
           S EE      S  A  G     W+           ++ +    L   Y    L S  +  
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLS--KQEEMVQKFVEEV-LRINYK--FLMSPIKTE 101

Query: 78  ERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPP--RMHNSIYS--PSTGMQV 133
           +R    P     + +  ++ L++  Q   K     +    P  ++  ++    P+  + +
Sbjct: 102 QR---QPSMMTRMYIEQRDRLYNDNQVFAK---YNVSRLQPYLKLRQALLELRPAKNV-L 154

Query: 134 LDGGRVKNFVAGSPFSTG--VLVAD-----RISGNFYGQGFLLHNGSYAARSRTSNVPGS 186
           +DG      V GS    G   +  D     ++      + F                   
Sbjct: 155 IDG------VLGS----GKTWVALDVCLSYKVQCKMDFKIF------------------- 185

Query: 187 GWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSP 246
            W +L + +S P +  E L                + +  Q+ P    N + R   S + 
Sbjct: 186 -WLNLKNCNS-PETVLEML----------------QKLLYQIDP----NWTSRSDHSSNI 223

Query: 247 AVRSVAE--------LQNDHPAKL----EVREVQI---------------DKGSTTISWS 279
            +R  +             +   L     V+  +                 K  T    +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 280 KRHRSRRI---KSGF--PDVDKFYQNVTGTCAPSLDLSEVA--------ASISKLQREEA 326
                  +          +V          C P  DL            + I++  R+  
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQ-DLPREVLTTNPRRLSIIAESIRDG- 340

Query: 327 KITAWENLQRAKAEAAIRKLEVS-----------NFYSLA 355
            +  W+N +    +     +E S            F  L+
Sbjct: 341 -LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00