Citrus Sinensis ID: 018507

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYTS
cccccccccccccEEcccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHccEEEccEEEEEEEcccEEEEEEEcccEEEEEccccccccccccEEEEEcccHHHHccHHHHHHHcccccccccEEEEccccHHHHHHHHHHHccccccEEEEEEEEcccccEEEEcccEEEEEEEcccccccccEEEEEEcHHHHHHHccccHHHHHHHHHccEEEccEEEccEEEEEccccccccccHHHHHcccccEEEEccccccccccHHHHHcccccHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHccccEEEccccccccccc
cccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccEEEEEcccEEEEEcccccHHHHHHHEEEEEccccccHcccHHHHHccccccccccEEEccHHHHHHHHHHHHHHcccccccccEEEEEEccccEEEEcccEEEEEEEccccccccEEEEEEccHHHHHcccccccHHHHHccccEEEEccccEccEEEEEcccccccccHHHHHHHHcccEEEEEccccccHHHHHHHHHccccHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHcccccccccccccccc
mqlslptspsklptifpfhpssipktpqsphhlslqshvgplnalksagfLSSISRAIDEEEEYRKARAAVVRKGidlegytiegvsigghetcviipelkcafdigrcptraIQQNFVFIThghldhigglpmyvasrglynlkpptifvppsikEDVEKLFEIHRSLGNVELNLDLVAldvgetyemrndivvrpfkthhvipsqGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGveitdiilspevaftgdttsefmlnprnADALRAKILITeatflddemSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKvsakvvpltegfksvyts
mqlslptspsklptiFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRslgnvelnLDLVALDVGETYEMRNDIvvrpfkthhvipsQGYVIYLLRKKLKKQYIHLKGkqieklkksgveitdiilSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKlqskvsakvvpltegfksvyts
MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYTS
*************************************************FL************YRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF******
*********SKLPTIFP***********************************************************DLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVY**
*********SKLPTIFPFHPSS************LQSHVGPLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIE********HLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYTS
****LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
Q8L633354 Ribonuclease Z, chloropla yes no 0.983 0.985 0.743 1e-155
Q8LGU7280 Nuclear ribonuclease Z OS no no 0.780 0.989 0.602 2e-99
P60193176 Nuclear ribonuclease Z (F N/A no 0.476 0.960 0.633 1e-62
Q9HN60308 Ribonuclease Z OS=Halobac yes no 0.597 0.688 0.296 4e-14
B0R7E2308 Ribonuclease Z OS=Halobac yes no 0.597 0.688 0.296 4e-14
A4YHP1291 Ribonuclease Z OS=Metallo yes no 0.532 0.649 0.295 6e-13
B9DNT1306 Ribonuclease Z OS=Staphyl yes no 0.591 0.686 0.290 1e-12
B1YLU8301 Ribonuclease Z OS=Exiguob yes no 0.605 0.714 0.299 2e-11
Q8Q032305 Ribonuclease Z OS=Methano yes no 0.580 0.675 0.294 3e-11
Q973F1293 Ribonuclease Z OS=Sulfolo yes no 0.588 0.713 0.293 1e-10
>sp|Q8L633|RNZC_ARATH Ribonuclease Z, chloroplastic OS=Arabidopsis thaliana GN=CPZ PE=2 SV=1 Back     alignment and function desciption
 Score =  547 bits (1409), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/359 (74%), Positives = 306/359 (85%), Gaps = 10/359 (2%)

Query: 1   MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
           MQLS   P SP   P IFP   +   K P   H L+ Q        ++ +K +G+ SSIS
Sbjct: 1   MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55

Query: 56  RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
           RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQ
Sbjct: 56  RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQ 115

Query: 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
           Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct: 116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175

Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
           ++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KK
Sbjct: 176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKK 235

Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
           SGVEITD ILSPE+AFTGDTTSE+ML+PRNADALRAK+LITEATFLD+  S EHAQ  GH
Sbjct: 236 SGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGH 295

Query: 296 THLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 354
           TH+S+IIENAKWIR+K VLLTHFSSRYH+E+IR+AVLKLQSKVSAKV+PLTEGF+S Y+
Sbjct: 296 THISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGFRSRYS 354
Zinc phosphodiesterase, which displays some tRNA 3'-processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 1EC: 1
>sp|Q8LGU7|RNZN_ARATH Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=NUZ PE=2 SV=3 Back     alignment and function description
>sp|P60193|RNZN_WHEAT Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum GN=ELAC PE=1 SV=1 Back     alignment and function description
>sp|Q9HN60|RNZ_HALSA Ribonuclease Z OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|B0R7E2|RNZ_HALS3 Ribonuclease Z OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|A4YHP1|RNZ_METS5 Ribonuclease Z OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|B9DNT1|RNZ_STACT Ribonuclease Z OS=Staphylococcus carnosus (strain TM300) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|B1YLU8|RNZ_EXIS2 Ribonuclease Z OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|Q8Q032|RNZ_METMA Ribonuclease Z OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|Q973F1|RNZ_SULTO Ribonuclease Z OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rnz PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
255576109361 ribonuclease z, chloroplast, putative [R 0.994 0.977 0.787 1e-164
449481110347 PREDICTED: ribonuclease Z, chloroplastic 0.977 1.0 0.764 1e-159
224131708366 predicted protein [Populus trichocarpa] 0.997 0.967 0.759 1e-158
449444739347 PREDICTED: ribonuclease Z, chloroplastic 0.977 1.0 0.759 1e-157
225447197354 PREDICTED: ribonuclease Z, chloroplastic 0.980 0.983 0.769 1e-156
297831528353 hypothetical protein ARALYDRAFT_480092 [ 0.983 0.988 0.754 1e-155
357493079357 Nuclear ribonuclease Z [Medicago truncat 0.971 0.966 0.745 1e-154
356501243354 PREDICTED: ribonuclease Z, chloroplastic 0.991 0.994 0.747 1e-154
363806948353 uncharacterized protein LOC100807082 [Gl 0.991 0.997 0.738 1e-153
22325471354 Ribonuclease Z [Arabidopsis thaliana] gi 0.983 0.985 0.743 1e-153
>gi|255576109|ref|XP_002528949.1| ribonuclease z, chloroplast, putative [Ricinus communis] gi|223531595|gb|EEF33423.1| ribonuclease z, chloroplast, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 285/362 (78%), Positives = 318/362 (87%), Gaps = 9/362 (2%)

Query: 1   MQLSLPTSPSKLPTIFPF-HPSS---IPKTPQSPHHLSLQSHV----GPLNALKSAGFLS 52
           MQ SLP S SK P+IFPF HP S         + H    Q+H+    GP  +LKS G+LS
Sbjct: 1   MQTSLPISHSKFPSIFPFNHPISHKPTTTRTTTEHQYPFQTHIKKPIGP-TSLKSTGYLS 59

Query: 53  SISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTR 112
           +I R I+EEEEYRKARAAV+RKGIDLEGY+IEG+SIGG ETC+IIPE KCAFDIGRCP+R
Sbjct: 60  AIGRVIEEEEEYRKARAAVIRKGIDLEGYSIEGLSIGGQETCLIIPEFKCAFDIGRCPSR 119

Query: 113 AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172
           AI QNFVFITH HLDHIGGLPMYVASRGLYNLKPPT+FVPP IKEDVEKLF+IHRS+G V
Sbjct: 120 AIHQNFVFITHAHLDHIGGLPMYVASRGLYNLKPPTVFVPPCIKEDVEKLFDIHRSMGQV 179

Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
           ELNL+LVALDVGETYE+RN++VVRPF+T HVIPSQGYVIY +RKKLKKQY HLKGKQIEK
Sbjct: 180 ELNLELVALDVGETYELRNNVVVRPFRTQHVIPSQGYVIYSVRKKLKKQYTHLKGKQIEK 239

Query: 233 LKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQ 292
           LKKSGVEITDI+LSPEVAFTGDTT+E+ML+P NADALRAK+LITEATFLD+  SIEHA+Q
Sbjct: 240 LKKSGVEITDIMLSPEVAFTGDTTAEYMLDPHNADALRAKVLITEATFLDEGFSIEHARQ 299

Query: 293 HGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSV 352
           HGHTHL EIIENA+WIRNK+VLLTHFSSRY +EDIRQAVLKLQSKVSAKVVPLTEGFKS 
Sbjct: 300 HGHTHLLEIIENAEWIRNKSVLLTHFSSRYTVEDIRQAVLKLQSKVSAKVVPLTEGFKST 359

Query: 353 YT 354
           Y+
Sbjct: 360 YS 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449481110|ref|XP_004156084.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224131708|ref|XP_002321158.1| predicted protein [Populus trichocarpa] gi|222861931|gb|EEE99473.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449444739|ref|XP_004140131.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225447197|ref|XP_002277241.1| PREDICTED: ribonuclease Z, chloroplastic [Vitis vinifera] gi|297739240|emb|CBI28891.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297831528|ref|XP_002883646.1| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp. lyrata] gi|297329486|gb|EFH59905.1| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357493079|ref|XP_003616828.1| Nuclear ribonuclease Z [Medicago truncatula] gi|355518163|gb|AES99786.1| Nuclear ribonuclease Z [Medicago truncatula] Back     alignment and taxonomy information
>gi|356501243|ref|XP_003519435.1| PREDICTED: ribonuclease Z, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|363806948|ref|NP_001242565.1| uncharacterized protein LOC100807082 [Glycine max] gi|255636804|gb|ACU18735.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|22325471|ref|NP_178532.2| Ribonuclease Z [Arabidopsis thaliana] gi|41017757|sp|Q8L633.1|RNZC_ARATH RecName: Full=Ribonuclease Z, chloroplastic; Short=RNase Z; AltName: Full=Zinc phosphodiesterase CPZ; AltName: Full=tRNA 3 endonuclease; AltName: Full=tRNase Z; Flags: Precursor gi|20466197|gb|AAM20416.1| unknown protein [Arabidopsis thaliana] gi|24899839|gb|AAN65134.1| unknown protein [Arabidopsis thaliana] gi|330250749|gb|AEC05843.1| Ribonuclease Z [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2058374354 CPZ [Arabidopsis thaliana (tax 0.983 0.985 0.743 2.4e-140
TAIR|locus:2019235280 TRZ1 "tRNAse Z1" [Arabidopsis 0.780 0.989 0.602 1e-91
UNIPROTKB|G4NGZ0381 MGG_17714 "Uncharacterized pro 0.498 0.464 0.289 3.4e-14
TIGR_CMR|BA_4364307 BA_4364 "ribonuclease Z" [Baci 0.580 0.671 0.296 2.8e-07
RGD|1304757362 Elac1 "elaC homolog 1 (E. coli 0.352 0.345 0.315 5e-06
UNIPROTKB|Q9H777363 ELAC1 "Zinc phosphodiesterase 0.352 0.344 0.308 6.6e-06
MGI|MGI:1890495362 Elac1 "elaC homolog 1 (E. coli 0.352 0.345 0.315 1e-05
UNIPROTKB|I3LGH2367 LOC100524839 "Uncharacterized 0.352 0.340 0.302 1.6e-05
UNIPROTKB|E2R4S6363 ELAC1 "Uncharacterized protein 0.352 0.344 0.302 3.1e-05
WB|WBGene00001983833 hoe-1 [Caenorhabditis elegans 0.614 0.261 0.236 9.3e-05
TAIR|locus:2058374 CPZ [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1373 (488.4 bits), Expect = 2.4e-140, P = 2.4e-140
 Identities = 267/359 (74%), Positives = 306/359 (85%)

Query:     1 MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
             MQLS   P SP   P IFP   +   K P   H L+ Q        ++ +K +G+ SSIS
Sbjct:     1 MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55

Query:    56 RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
             RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQ
Sbjct:    56 RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQ 115

Query:   116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
             Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct:   116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175

Query:   176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
             ++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KK
Sbjct:   176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKK 235

Query:   236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
             SGVEITD ILSPE+AFTGDTTSE+ML+PRNADALRAK+LITEATFLD+  S EHAQ  GH
Sbjct:   236 SGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGH 295

Query:   296 THLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 354
             TH+S+IIENAKWIR+K VLLTHFSSRYH+E+IR+AVLKLQSKVSAKV+PLTEGF+S Y+
Sbjct:   296 THISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGFRSRYS 354
GO:0005634 "nucleus" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA
GO:0008033 "tRNA processing" evidence=TAS
GO:0009507 "chloroplast" evidence=ISS
GO:0042781 "3'-tRNA processing endoribonuclease activity" evidence=IDA
GO:0042780 "tRNA 3'-end processing" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006399 "tRNA metabolic process" evidence=RCA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0016556 "mRNA modification" evidence=RCA
TAIR|locus:2019235 TRZ1 "tRNAse Z1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4NGZ0 MGG_17714 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4364 BA_4364 "ribonuclease Z" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
RGD|1304757 Elac1 "elaC homolog 1 (E. coli)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H777 ELAC1 "Zinc phosphodiesterase ELAC protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1890495 Elac1 "elaC homolog 1 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LGH2 LOC100524839 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4S6 ELAC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
WB|WBGene00001983 hoe-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L633RNZC_ARATH3, ., 1, ., 2, 6, ., 1, 10.74370.98300.9858yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.26.110.979
3rd Layer3.1.260.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
TIGR02651299 TIGR02651, RNase_Z, ribonuclease Z 7e-29
COG1234292 COG1234, ElaC, Metal-dependent hydrolases of the b 2e-26
TIGR02650277 TIGR02650, RNase_Z_T_toga, ribonuclease Z, Thermot 4e-17
PRK00055270 PRK00055, PRK00055, ribonuclease Z; Reviewed 1e-15
pfam12706197 pfam12706, Lactamase_B_2, Beta-lactamase superfami 9e-14
COG0595 555 COG0595, COG0595, mRNA degradation ribonucleases J 3e-08
COG1236 427 COG1236, YSH1, Predicted exonuclease of the beta-l 2e-06
TIGR02649303 TIGR02649, true_RNase_BN, ribonuclease BN 7e-06
smart00849177 smart00849, Lactamase_B, Metallo-beta-lactamase su 2e-05
pfam00753148 pfam00753, Lactamase_B, Metallo-beta-lactamase sup 2e-05
PRK02126334 PRK02126, PRK02126, ribonuclease Z; Provisional 6e-04
COG1235269 COG1235, PhnP, Metal-dependent hydrolases of the b 8e-04
TIGR00649 422 TIGR00649, MG423, conserved hypothetical protein 0.001
>gnl|CDD|233963 TIGR02651, RNase_Z, ribonuclease Z Back     alignment and domain information 
 Score =  113 bits (284), Expect = 7e-29
 Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 35/233 (15%)

Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
           +FITH H DHI GLP  +++      K P TI+ PP IKE +E    +  +  N  +   
Sbjct: 55  IFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRVSYTYLNYPIK-- 112

Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
           +  ++ G      +   V  F   H IPS GY            R+K K+  + +    +
Sbjct: 113 IHEIEEGGLVFEDDGFKVEAFPLDHSIPSLGYRFEEKDRPGKFDREKAKE--LGIPPGPL 170

Query: 231 EKLKKSGVEIT---DIILSPE-----------VAFTGDT--TSEFMLNPRNADALRAKIL 274
               K G  +T     I+ PE           +A+TGDT    E +   +NAD     +L
Sbjct: 171 YGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVIEFAKNAD-----LL 225

Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
           I EATFLD++   + A+++GH+  ++  E AK    K ++LTH S RY  E+ 
Sbjct: 226 IHEATFLDEDK--KLAKEYGHSTAAQAAEIAKEANVKRLILTHISPRYSDEEE 276

Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN [Transcription, RNA processing]. Length = 299
>gnl|CDD|224155 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>gnl|CDD|188239 TIGR02650, RNase_Z_T_toga, ribonuclease Z, Thermotoga type Back     alignment and domain information
>gnl|CDD|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed Back     alignment and domain information
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain Back     alignment and domain information
>gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|131697 TIGR02649, true_RNase_BN, ribonuclease BN Back     alignment and domain information
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|235006 PRK02126, PRK02126, ribonuclease Z; Provisional Back     alignment and domain information
>gnl|CDD|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>gnl|CDD|233071 TIGR00649, MG423, conserved hypothetical protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
PRK02113252 putative hydrolase; Provisional 100.0
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 100.0
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 100.0
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 100.0
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 100.0
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 100.0
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 100.0
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 100.0
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 100.0
PRK02126334 ribonuclease Z; Provisional 100.0
PRK00055270 ribonuclease Z; Reviewed 99.97
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 99.92
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.91
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 99.89
PRK00685228 metal-dependent hydrolase; Provisional 99.87
TIGR00649 422 MG423 conserved hypothetical protein. Contains an 99.87
PRK04286298 hypothetical protein; Provisional 99.85
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.76
TIGR03675 630 arCOG00543 arCOG00543 universal archaeal KH-domain 99.75
COG1236 427 YSH1 Predicted exonuclease of the beta-lactamase f 99.69
COG1782 637 Predicted metal-dependent RNase, consists of a met 99.68
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 99.66
KOG1136 501 consensus Predicted cleavage and polyadenylation s 99.54
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.51
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 99.45
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 99.32
PRK11921394 metallo-beta-lactamase/flavodoxin domain-containin 99.31
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 99.23
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 99.21
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 99.19
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 99.16
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 99.13
PLN02469258 hydroxyacylglutathione hydrolase 99.13
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 99.12
PLN02398329 hydroxyacylglutathione hydrolase 99.11
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 99.1
KOG1361 481 consensus Predicted hydrolase involved in interstr 99.05
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 98.95
PLN02962251 hydroxyacylglutathione hydrolase 98.94
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 98.86
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 98.86
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 98.83
KOG0813265 consensus Glyoxylase [General function prediction 98.83
KOG1135 764 consensus mRNA cleavage and polyadenylation factor 98.77
PRK11539755 ComEC family competence protein; Provisional 98.72
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 98.61
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 98.6
KOG0814237 consensus Glyoxylase [General function prediction 98.05
KOG3798343 consensus Predicted Zn-dependent hydrolase (beta-l 97.69
PF1369163 Lactamase_B_4: tRNase Z endonuclease 97.23
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 96.43
COG2015 655 Alkyl sulfatase and related hydrolases [Secondary 95.49
KOG1138 653 consensus Predicted cleavage and polyadenylation s 95.22
KOG2121 746 consensus Predicted metal-dependent hydrolase (bet 94.81
KOG3592 934 consensus Microtubule-associated proteins [Cytoske 89.75
PF0752143 RMMBL: RNA-metabolising metallo-beta-lactamase; In 83.46
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-40  Score=307.36  Aligned_cols=239  Identities=18%  Similarity=0.235  Sum_probs=185.4

Q ss_pred             cccccccchHHHHHHhHHHHHHHHHhhhhccccccCcCeEEEEEeecCceEEEEe--CCcEEEEecCCCCcccc------
Q 018507           43 NALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII--PELKCAFDIGRCPTRAI------  114 (355)
Q Consensus        43 ~~~lGtG~~~gip~~~c~c~~C~~ar~~~~~~s~~~~~~~i~~~~~g~~~s~~~i--~~~~iLID~G~~~~~~~------  114 (355)
                      .++||||+++|+|+++|.|++|.+|+.+..                 |+++|+++  ++..+|||||+++..++      
T Consensus         3 ~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~-----------------R~~~s~li~~~~~~iLiD~G~g~~~~l~~~~~~   65 (252)
T PRK02113          3 IRILGSGTSTGVPEIGCTCPVCTSKDPRDN-----------------RLRTSALVETEGARILIDCGPDFREQMLRLPFG   65 (252)
T ss_pred             EEEEEeCCCCCeecCCCCCccCCCCCCCCc-----------------ceeeEEEEEECCeEEEEECCchHHHHHHhcCcc
Confidence            458999999999999999999999863322                 44667777  56789999999977653      


Q ss_pred             ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCC--cCceeEEEcCCCCeeeecCC
Q 018507          115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV--ELNLDLVALDVGETYEMRND  192 (355)
Q Consensus       115 ~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~g~~~~i~~g  192 (355)
                      ++|+|||||.|+||++||+.++..   ...++++||+++.+.+.++..+.+.......  ...++++++++++.++++ +
T Consensus        66 ~id~I~lTH~H~DH~~gl~~l~~~---~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~  141 (252)
T PRK02113         66 KIDAVLITHEHYDHVGGLDDLRPF---CRFGEVPIYAEQYVAERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVN-H  141 (252)
T ss_pred             ccCEEEECCCChhhhCCHHHHHHh---ccCCCceEEECHHHHHHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEEC-C
Confidence            699999999999999999988642   2346889999999988887654221100000  013578889999999996 9


Q ss_pred             eEEEEEEcCCC-CCCeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccccccCCC
Q 018507          193 IVVRPFKTHHV-IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRA  271 (355)
Q Consensus       193 ~~v~~~~~~H~-~~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~  271 (355)
                      ++|+++++.|+ .+++||++.                                   +++|+||+.+.  .....+.++++
T Consensus       142 ~~i~~~~~~H~~~~~~gy~i~-----------------------------------~i~y~~Dt~~~--~~~~~~~~~~~  184 (252)
T PRK02113        142 TEVTPLRVMHGKLPILGYRIG-----------------------------------KMAYITDMLTM--PEEEYEQLQGI  184 (252)
T ss_pred             eEEEEEEecCCCccEEEEEeC-----------------------------------CEEEccCCCCC--CHHHHHHhcCC
Confidence            99999999997 689999993                                   69999999852  22234567899


Q ss_pred             CEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEecCCCCChhHHHHHHHHhcccccCceeeccccccc
Q 018507          272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKS  351 (355)
Q Consensus       272 d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~  351 (355)
                      |+||+|+++..        ...+|+++++++++++++++|++++||+++++..  ..    ++.+.++.++.+|+|||++
T Consensus       185 DlLi~e~~~~~--------~~~~H~t~~~a~~~~~~~~~k~l~l~H~s~~~~~--~~----~~~~~~~~~~~~A~Dg~~~  250 (252)
T PRK02113        185 DVLVMNALRIA--------PHPTHQSLEEALENIKRIGAKETYLIHMSHHIGL--HA----DVEKELPPHVHFAYDGLEI  250 (252)
T ss_pred             CEEEEhhhcCC--------CCCCcCCHHHHHHHHHHhCCCEEEEEcccccchh--HH----HHHHhCCCCceeccCceEE
Confidence            99999998632        3568999999999999999999999999998752  11    2223345578999999987


Q ss_pred             cc
Q 018507          352 VY  353 (355)
Q Consensus       352 ~~  353 (355)
                      .+
T Consensus       251 ~~  252 (252)
T PRK02113        251 IF  252 (252)
T ss_pred             eC
Confidence            53

>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>KOG0814 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PF13691 Lactamase_B_4: tRNase Z endonuclease Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton] Back     alignment and domain information
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
1ww1_A280 Crystal Structure Of Trnase Z From Thermotoga Marit 5e-16
3zwf_A368 Crystal Structure Of Human Trnase Z, Short Form (El 6e-07
4gcw_A320 Crystal Structure Of Rnase Z In Complex With Precur 7e-07
1y44_A320 Crystal Structure Of Rnase Z Length = 320 1e-06
2cbn_A306 Crystal Structure Of Zipd From Escherichia Coli Len 2e-06
2fk6_A320 Crystal Structure Of Rnase ZTRNA(THR) COMPLEX Lengt 7e-06
>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima Length = 280 Back     alignment and structure 
Iteration: 1

 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 130/273 (47%), Gaps = 26/273 (9%)
Query: 82  TIEGVSIGGHETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYV 136
            I G S     T +     +  FD G        ++     +VF+THGH+DHI GL   V
Sbjct: 2   NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61
Query: 137 ASR--GLYNLKPPTIFVPPSIKEDVEKLFE-IHRSLGNVELNLDLVALDVGETYEMRN-- 191
             R  G+ + + P     P     VE+  E I R+  ++  + ++  L  GE   +RN  
Sbjct: 62  NIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAG 121
Query: 192 --DIVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245
                V+PF+T HV    S GY I+ +R+KLKK++  L  K+I +L K+ G + +T+   
Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181
Query: 246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
              +  +GD+ +   L+P        ++LI E TFLD        +   H  + E++E+ 
Sbjct: 182 KKVLTISGDSLA---LDPEEIRG--TELLIHECTFLD----ARDRRYKNHAAIDEVMESV 232
Query: 306 KWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
           K    K V+L H S+RY I  ++  + K + ++
Sbjct: 233 KAAGVKKVILYHISTRY-IRQLKSVIKKYREEM 264
>pdb|3ZWF|A Chain A, Crystal Structure Of Human Trnase Z, Short Form (Elac1). Length = 368 Back     alignment and structure
>pdb|4GCW|A Chain A, Crystal Structure Of Rnase Z In Complex With Precursor Trna(Thr) Length = 320 Back     alignment and structure
>pdb|1Y44|A Chain A, Crystal Structure Of Rnase Z Length = 320 Back     alignment and structure
>pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli Length = 306 Back     alignment and structure
>pdb|2FK6|A Chain A, Crystal Structure Of Rnase ZTRNA(THR) COMPLEX Length = 320 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 8e-65
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 9e-29
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 9e-28
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 4e-25
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 8e-23
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 1e-06
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 1e-06
3af5_A 651 Putative uncharacterized protein PH1404; archaeal 5e-06
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 8e-06
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 2e-05
2az4_A 429 Hypothetical protein EF2904; structural genomics, 2e-05
2xr1_A 640 Cleavage and polyadenylation specificity factor 1 1e-04
2i7t_A 459 Cleavage and polyadenylation specificity factor 73 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 3e-04
2ycb_A 636 Beta-CAsp RNAse, cleavage and polyadenylation spec 4e-04
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Length = 280 Back     alignment and structure
 Score =  205 bits (525), Expect = 8e-65
 Identities = 78/286 (27%), Positives = 129/286 (45%), Gaps = 28/286 (9%)

Query: 82  TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYV 136
            I G S     T +     +  FD G   +  +         VF+THGH+DHI GL   V
Sbjct: 2   NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61

Query: 137 ASRGLYNL---KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND- 192
             R        KP  +F P   +   E    I R+  ++  + ++  L  GE   +RN  
Sbjct: 62  NIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAG 121

Query: 193 ---IVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245
                V+PF+T HV    S GY I+ +R+KLKK++  L  K+I +L K+ G + +T+   
Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181

Query: 246 SPEVAFTGDTTSEFMLNPRNADALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEIIEN 304
              +  +GD+         + + +R  ++LI E TFLD        +   H  + E++E+
Sbjct: 182 KKVLTISGDSL------ALDPEEIRGTELLIHECTFLDAR----DRRYKNHAAIDEVMES 231

Query: 305 AKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFK 350
            K    K V+L H S+RY I  ++  + K + ++    +   +  K
Sbjct: 232 VKAAGVKKVILYHISTRY-IRQLKSVIKKYREEMPDVEILYMDPRK 276
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320 Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Length = 306 Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Length = 368 Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} PDB: 1xto_A Length = 321 Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Length = 562 Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Length = 555 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258 Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Length = 429 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Length = 293 Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 100.0
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 100.0
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 100.0
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 100.0
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 100.0
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 100.0
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 100.0
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 99.97
3kl7_A235 Putative metal-dependent hydrolase; structural gen 99.86
2az4_A 429 Hypothetical protein EF2904; structural genomics, 99.84
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 99.84
3rpc_A264 Possible metal-dependent hydrolase; structural gen 99.83
3iek_A 431 Ribonuclease TTHA0252; metallo beta lactamase fold 99.83
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 99.83
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 99.82
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 99.8
3af5_A 651 Putative uncharacterized protein PH1404; archaeal 99.79
3zdk_A 336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 99.78
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 99.77
2i7t_A 459 Cleavage and polyadenylation specificity factor 73 99.77
2ycb_A 636 Beta-CAsp RNAse, cleavage and polyadenylation spec 99.77
4b87_A 367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 99.77
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 99.76
2xr1_A 640 Cleavage and polyadenylation specificity factor 1 99.76
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 99.75
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.59
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 99.47
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 99.43
2bib_A 547 CBPE, teichoic acid phosphorylcholine esterase/ ch 99.41
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 99.4
1e5d_A 402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 99.4
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 99.39
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductas 99.37
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 99.35
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 99.35
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 99.35
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.35
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 99.34
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 99.34
4efz_A298 Metallo-beta-lactamase family protein; structural 99.33
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 99.32
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 99.29
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 99.29
1xm8_A254 Glyoxalase II; structural genomics, protein struct 99.28
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 99.28
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 99.28
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like doma 99.27
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 99.26
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 99.26
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 99.25
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 99.25
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 99.24
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 99.24
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 99.22
2q9u_A 414 A-type flavoprotein; flavodoxin like, beta lactama 99.21
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 99.19
3r2u_A 466 Metallo-beta-lactamase family protein; structural 99.18
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 99.15
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 99.15
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 99.14
1ztc_A221 Hypothetical protein TM0894; structural genomics, 99.14
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 99.13
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 99.13
3h3e_A267 Uncharacterized protein TM1679; structural genomic 99.07
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 99.07
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 99.05
3esh_A280 Protein similar to metal-dependent hydrolase; stru 99.04
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 98.87
2p97_A201 Hypothetical protein; putative metal-dependent hyd 98.79
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 98.78
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 98.08
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
Probab=100.00  E-value=1.5e-43  Score=335.85  Aligned_cols=257  Identities=11%  Similarity=0.126  Sum_probs=191.7

Q ss_pred             CcccccccchHHHHHHhHHHHHHHHHhhhhcc-ccccCcCeEEEEEeecCceEEEEe--CCcE-EEEecCCCCccc----
Q 018507           42 LNALKSAGFLSSISRAIDEEEEYRKARAAVVR-KGIDLEGYTIEGVSIGGHETCVII--PELK-CAFDIGRCPTRA----  113 (355)
Q Consensus        42 ~~~~lGtG~~~gip~~~c~c~~C~~ar~~~~~-~s~~~~~~~i~~~~~g~~~s~~~i--~~~~-iLID~G~~~~~~----  113 (355)
                      ..++||||+++|+|+++|+|++|++||+...+ +              .|+++|+++  ++.+ +|||||++++.+    
T Consensus         4 ~~~~LGtg~s~G~P~~~C~C~~C~~a~~~~~~~~--------------~R~~ss~li~~~~~~~iLiD~G~~~~~~l~~~   69 (321)
T 3jxp_A            4 YIQVLGSAAGGGFPQWNCNCVNCKGYRDGTLKAT--------------ARTQSSIALSDDGVHWILCNASPDIRAQLQAF   69 (321)
T ss_dssp             EEEEEECBCTTTBTTTTCCSHHHHHHHHTCSCCC--------------CBCBCEEEEESSSSSEEEECCCTTHHHHHHTC
T ss_pred             EEEEEEeCCCCCCCcCCcCCccchhhhhCCCCCC--------------cccceEEEEEeCCceEEEEeCCchHHHHHHhc
Confidence            34589999999999999999999999975433 2              145677887  4455 999999987532    


Q ss_pred             -----------cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeEEEcC
Q 018507          114 -----------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALD  182 (355)
Q Consensus       114 -----------~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  182 (355)
                                 .+|++|||||.|+||++|++.++.      ..+++||+++.+.+.++..+..+..+......+++++++
T Consensus        70 ~~l~~~~~~~~~~i~~i~lTH~H~DH~~gl~~l~~------~~~~~vy~~~~~~~~l~~~~~~f~~~~~~~~~i~~~~i~  143 (321)
T 3jxp_A           70 APMQPARALRDTGINAIVLLDSQIDHTTGLLSLRE------GCPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIE  143 (321)
T ss_dssp             GGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGG------GCCEEEEECHHHHHHTTTTSCHHHHHTTTTTCEEEEECC
T ss_pred             ccccccccCCcccCCEEEECCCChhhhhhHHHHHh------cCCCeEEECHHHHHHHHhhCccccccccccCceeEEEcC
Confidence                       258999999999999999998842      246889999999888875332222112111236888999


Q ss_pred             CCCeeee---cCCeEEEEEEcC--------CC-----CCCeEEEEEE-cchhhhhhhcccchHHHHHHHhcCceecceee
Q 018507          183 VGETYEM---RNDIVVRPFKTH--------HV-----IPSQGYVIYL-LRKKLKKQYIHLKGKQIEKLKKSGVEITDIIL  245 (355)
Q Consensus       183 ~g~~~~i---~~g~~v~~~~~~--------H~-----~~~~g~~i~~-~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~  245 (355)
                      +++++.+   + +++|+++++.        |+     .+++||+|+. .+                              
T Consensus       144 ~g~~~~i~~~~-~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~~------------------------------  192 (321)
T 3jxp_A          144 LEGSFVIDACP-NLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRT------------------------------  192 (321)
T ss_dssp             SSSCEECTTST-TEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETTT------------------------------
T ss_pred             CCCeEEeccCC-CeEEEEEEecCCccccccccccccCCCcEEEEEEecCC------------------------------
Confidence            9999999   7 9999999997        65     4799999973 11                              


Q ss_pred             CCeEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccH------HHHhhcCCCcHH---HHHHHHHHcCCCeEEEE
Q 018507          246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSI------EHAQQHGHTHLS---EIIENAKWIRNKAVLLT  316 (355)
Q Consensus       246 ~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~------~~a~~~~H~~~~---~a~~~~~~~~~k~~vlt  316 (355)
                      +++++|+||+...  .....+.++++|+||+||||..+..+.      +.+..++|++.+   +|+++++++++|+++||
T Consensus       193 g~~i~y~~Dt~~~--~~~~~~~~~~~D~li~eat~~~d~e~~~~glk~r~~~~~gH~s~~~~~eA~~~a~~~~~k~lvLt  270 (321)
T 3jxp_A          193 GGKLFYAPGLGQV--DEKLLAMMHGADCLLVDGTLWEDDEMQRRGVGTRTGREMGHLAQNGPGGTLEVLDGFPRQRKVLI  270 (321)
T ss_dssp             CCEEEEESSCCCC--CHHHHHHHHHCSEEEEECCCSSTTHHHHHTSCSCCCC-CCCCCSSSTTCHHHHHTTCSSSEEEEE
T ss_pred             CcEEEEECCCCCC--CHHHHHHhcCCCEEEEeCCCCCcHHHhhccccccccCCCcccCCCCHHHHHHHHHhCCCCeEEEE
Confidence            1389999999862  223345677899999999987654211      112457999999   99999999999999999


Q ss_pred             ecCCCCChhHHHHHHHHhcccccCceeeccccccccc
Q 018507          317 HFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVY  353 (355)
Q Consensus       317 H~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~~~  353 (355)
                      |+|++++.  +.+..+++++.++.+|++|||||++..
T Consensus       271 H~s~~np~--l~~~~~e~~~~~~~~v~~A~DGm~i~~  305 (321)
T 3jxp_A          271 HINNTNPI--LDENSPERAEVLRRGVEVAFDGMSIEL  305 (321)
T ss_dssp             SBCTTCGG--GSTTCHHHHHHHHTTEEECCTTCEEEE
T ss_pred             EeCCCCcc--cccchHHHHHhhcCCcEEecCCcEEEe
Confidence            99999863  111111222334679999999999875
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d2e7ya1280 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Ther 2e-29
d1y44a1307 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Baci 3e-12
d2cbna1305 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Esch 2e-09
d1xtoa_304 d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, P 2e-09
d2dkfa1 431 d.157.1.10 (A:1-431) Putative RNA-degradation prot 9e-07
d2i7xa1 514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 3e-06
d2i7ta1 451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 7e-06
d1zkpa1244 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (B 5e-05
d2az4a1183 d.157.1.10 (A:56-238) Hypothetical protein EF2904 2e-04
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Length = 280 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Thermotoga maritima [TaxId: 2336]

 Score =  112 bits (279), Expect = 2e-29
 Identities = 73/270 (27%), Positives = 113/270 (41%), Gaps = 22/270 (8%)

Query: 82  TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYV 136
            I G S     T +     +  FD G   +  +         VF+THGH+DHI GL   V
Sbjct: 2   NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61

Query: 137 ASRGL---YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-- 191
             R        KP  +F P   +   E    I R+  ++  + ++  L  GE   +RN  
Sbjct: 62  NIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAG 121

Query: 192 --DIVVRPFKTHH--VIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSP 247
                V+PF+T H     S GY I+ +R+KLKK++  L  K+I +L K            
Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181

Query: 248 EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKW 307
           +   T    S  +           ++LI E TFLD        +   H  + E++E+ K 
Sbjct: 182 KKVLTISGDSLALDPEE---IRGTELLIHECTFLDAR----DRRYKNHAAIDEVMESVKA 234

Query: 308 IRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
              K V+L H S+RY I  ++  + K + +
Sbjct: 235 AGVKKVILYHISTRY-IRQLKSVIKKYREE 263
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Length = 307 Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Length = 305 Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304 Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Length = 244 Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 100.0
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 100.0
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 100.0
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 99.98
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 99.97
d2dkfa1 431 Putative RNA-degradation protein TTHA0252 {Thermus 99.81
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.77
d2i7ta1 451 Cleavage and polyadenylation specificity factor su 99.7
d2i7xa1 514 Cleavage factor two protein 2, CFT2 {Baker's yeast 99.68
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 99.37
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 99.23
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 99.2
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 99.19
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.18
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 99.17
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 99.16
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.15
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 99.14
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 99.14
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 99.13
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.13
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 99.05
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 99.01
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 98.97
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 98.96
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 98.96
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.91
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 98.9
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.63
d2cfua2 505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 98.58
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 98.05
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-35  Score=275.79  Aligned_cols=254  Identities=22%  Similarity=0.255  Sum_probs=198.6

Q ss_pred             CceEEEEe------CCcEEEEecCCCCcccc--------ccCEEEeccCCccccCChHHHHHHhCcC-CCCCCEEecChh
Q 018507           90 GHETCVII------PELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS  154 (355)
Q Consensus        90 ~~~s~~~i------~~~~iLID~G~~~~~~~--------~id~I~lTH~H~DHi~GL~~l~~~~~~~-~~~~~~Iy~~~~  154 (355)
                      |+++|+++      ++..+|||||+++.+++        +|++|||||.|+||++||+.|+..+++. +.+++.||+|+.
T Consensus        17 r~~s~~li~~~~~~~~~~iL~DcG~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~i~gP~~   96 (305)
T d2cbna1          17 RNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG   96 (305)
T ss_dssp             CCBCEEEEECCCSSCCCEEEECCCTTHHHHHHTSCCCTTTEEEEECSCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTT
T ss_pred             CccCEEEEEEecCCCCcEEEEeCchHHHHHHHHhCCCHHHCcEEEEccccHHHhCchhhhhhhhhccCCcccccccCChh
Confidence            56778888      35689999999976653        6999999999999999999998765544 467899999999


Q ss_pred             hHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEcCCCCCCeEEEEEEcchhh-----hhhhcccc-hH
Q 018507          155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL-----KKQYIHLK-GK  228 (355)
Q Consensus       155 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~~~g~~i~~~~~~l-----~~~~~~~~-~~  228 (355)
                      +.++++..+.......  ...+++++......+.. +.+++.+++..|..++.+|++.+.....     +....+.+ ++
T Consensus        97 ~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (305)
T d2cbna1          97 IREFVETALRISGSWT--DYPLEIVEIGAGEILDD-GLRKVTAYPLEHPLECYGYRIEEHDAPGALNAQALKAAGVPPGP  173 (305)
T ss_dssp             HHHHHHHHHHHTTCCC--SSCEEEEECCSEEEEEC-SSEEEEEEECBSSSCCEEEEEEECCCCCCBCHHHHHHTTCCSSH
T ss_pred             HHHHHHHHhhhhcccc--cccceeeecccccceec-cceeEEeeeccccccccccccccccCCccchhhhhhhcCCCCch
Confidence            9999988765443221  23456666665556665 4899999999999999999998765422     12355664 78


Q ss_pred             HHHHHHhcC-cee------------cceeeCCeEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcCC
Q 018507          229 QIEKLKKSG-VEI------------TDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH  295 (355)
Q Consensus       229 ~~~~Lk~~G-~~i------------~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H  295 (355)
                      +..+|+... +.+            .....+.+++|+|||++.+   ...+.++++|+||+||||.++.  .+++..++|
T Consensus       174 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~sgDt~~~~---~l~~~~~~~d~LI~E~t~~~~~--~~~a~~~~H  248 (305)
T d2cbna1         174 LFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCD---AALDLAKGVDVMVHEATLDITM--EAKANSRGH  248 (305)
T ss_dssp             HHHHHHHTCCCEETTTEECCGGGTBCCCCCCCEEEECCSCBSCS---THHHHHTTCSEEEEECCBCGGG--HHHHHHTTC
T ss_pred             hhhhcCcceEEEEeeceeeeeccccccccccceeecccccCCch---hHHHHhhccceeeeccccchhh--hhcccCCCC
Confidence            888888632 111            1233567999999998743   2345778999999999998765  567788999


Q ss_pred             CcHHHHHHHHHHcCCCeEEEEecCCCCChhHHHHHHHHhcccccCceeecccccccc
Q 018507          296 THLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSV  352 (355)
Q Consensus       296 ~~~~~a~~~~~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~~  352 (355)
                      ++++++++++++.++|++||||+|+++..+++++.++++++.++ ++.+|+|||.+.
T Consensus       249 ~t~~~~~~la~~~~~k~lvltH~s~~~~~~~~~~~~~e~~~~~~-~~~~a~Dg~~i~  304 (305)
T d2cbna1         249 SSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFP-ATELANDFTVFN  304 (305)
T ss_dssp             CBHHHHHHHHHHHTCSEEEEECBCTTCCHHHHHHHHHHHHTTCS-CEEECCTTCEEE
T ss_pred             CCHHHHHHHHHHcCCCEEEEECCCcCCCchhHHHHHHHHHHHCC-CeEEcCCCCEEE
Confidence            99999999999999999999999999988888888887766655 699999999874
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure