Citrus Sinensis ID: 018571

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
Protein Sequence
MERNEAATKNKTTSLKKLDLYPVQNLTERNEATKNVTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKATKSLSSRK
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHcHHHHHHcHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEcccccccHHHHHHHHHHccccccccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHHccccccccccccccHHHHHHHccccccccEEEEcccccHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHccEEEEcccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHcccHcccccccHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHcccEEEcccccccccccccccHHHcccccccHHHHHHccccccEccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
merneaatknkttslkkldlypvqnlternEATKNVTAFLKNlqfnsrlphekskppslvSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSweildisgsdvsdfGLVKVAQMCKSLKAVDIRITAAGVSEFLLHCHsletlrcggsprsnhAARRCLGIlkpklndvegdsWEELVNTdighgaqslrwfvwpnidkdsiemmstecpriivnpkpspfgfrgfevpreafpditlddpfvndidpsawavprfasmgistsllspnelSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKAtkslssrk
Flexible Loop (DISEMBL)
merneaatknkttslkkldlypvqnlterneATKNVTAFLKNLQFNsrlphekskppSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIlkpklndveGDSWEELVNTDighgaqslrwFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVerdtrlapkraknarqhqrraerewmetstsaKAIALaskatkslssrk
Low Complexity Region (SEG)
MERNEAATKNKTTSLKKLDLYPVQNLTERNEATKNVTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDikiaiasiarrrkllaDDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMEtstsakaialaskatkslssRK
Disordered region (IsUnstruct)
*******************LYPV***********NVTAFLKNLQF*************LVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLS*****MAEKFRLAFV*************************************************
Disordered Region (DISOPRED)
**************************************FL******************LVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWA********************MAEKFRLAFVERD*************************STSAKAIALASK**K******
Disordered Region (DISEMBL)
***********TTSLKKLDLYPVQNLTERNEATKNVTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVERDTRLA***********************SAKAIALA***********
Disordered Region (DISPRO)
**************LKKLDLYPVQ*****************************SKPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPR*************NELSMAEKFRLAFVERDTRLAPKRAKNAR*HQ***EREWMETSTSAKAIALASKA********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERNEAATKNKTTSLKKLDLYPVQNLTERNEATKNVTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKATKSLSSRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
225460963	347	PREDICTED: uncharacterized protein LOC10	0.949	0.968	0.661	1e-129
449444052	367	PREDICTED: uncharacterized protein LOC10	0.870	0.839	0.683	1e-120
356553046	351	PREDICTED: uncharacterized protein LOC10	0.971	0.980	0.625	1e-118
363806726	351	uncharacterized protein LOC100797026 [Gl	0.971	0.980	0.620	1e-117
357494547	355	hypothetical protein MTR_5g092970 [Medic	0.892	0.890	0.640	1e-113
224116614	355	predicted protein [Populus trichocarpa]	0.968	0.966	0.596	1e-110
30687441	343	uncharacterized protein [Arabidopsis tha	0.920	0.950	0.613	1e-107
297799294	342	hypothetical protein ARALYDRAFT_492098 [	0.918	0.950	0.613	1e-105
255583615	266	conserved hypothetical protein [Ricinus	0.734	0.977	0.715	1e-102
4455221	403	putative protein [Arabidopsis thaliana]	0.836	0.734	0.603	1e-102

>gi|225460963|ref|XP_002279971.1| PREDICTED: uncharacterized protein LOC100248711 [Vitis vinifera] gi|297737440|emb|CBI26641.3| unnamed protein product [Vitis vinifera]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/349 (66%), Positives = 274/349 (78%), Gaps = 13/349 (3%)

Query: 9   KNKTTSLKKLDLYPVQNLTERNEATKNVTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVG 68
           K+ TTS +KL L P+         +K+  + +     +SR P EK+KPPSL SLCLG+VG
Sbjct: 7   KSLTTSFQKLHLSPI---------SKSKPSVIPPTFQSSRSPIEKTKPPSLESLCLGVVG 57

Query: 69  KHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSD 128
           KH EDIIGDL EIA+NFP D K+A+A+IARRR+LL DDVI+SLA+SSWEILDISGSDVSD
Sbjct: 58  KHFEDIIGDLGEIAVNFPADTKMAMAAIARRRQLLNDDVIISLAESSWEILDISGSDVSD 117

Query: 129 FGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGI 184
           FGL KVA+ CK L+AVDI    ++TAAGVSE + HCHSLETLRCGG PRS+H AR+CLGI
Sbjct: 118 FGLAKVAERCKVLRAVDISRCSKVTAAGVSELVWHCHSLETLRCGGCPRSDHTARQCLGI 177

Query: 185 LKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPF 244
            KPKLND+EG+SWEEL  T+I HGA+SLRW VWP ID +S+E  + ECPRIIVNPKPSPF
Sbjct: 178 FKPKLNDIEGESWEELDPTEIAHGAESLRWLVWPKIDNNSLESFAAECPRIIVNPKPSPF 237

Query: 245 GFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAF 304
           GFRG +VP EA P++ LD+P V DIDP  WAV  F +   + S  S  EL +AEKFRLAF
Sbjct: 238 GFRGVKVPVEALPNVALDEPIVKDIDPRTWAVSGFTARPTAPSSPSSTELPIAEKFRLAF 297

Query: 305 VERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKATKSLSSR 353
           VERD+RLAPKRAKNARQH RRAEREW+ TST AKA+ALAS+A+KSL  R
Sbjct: 298 VERDSRLAPKRAKNARQHLRRAEREWVMTSTRAKALALASQASKSLHGR 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444052|ref|XP_004139789.1| PREDICTED: uncharacterized protein LOC101203553 [Cucumis sativus] gi|449518907|ref|XP_004166477.1| PREDICTED: uncharacterized LOC101203553 [Cucumis sativus]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/316 (68%), Positives = 258/316 (81%), Gaps = 8/316 (2%)

Query: 44  QFN-SRLPHEKSKPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKL 102
           QF+ + L  E+ KPP+LVSLC+G++GKHLEDII DLD I+ NFP D+K +IA+IARRR+L
Sbjct: 53  QFSGTGLAFERKKPPNLVSLCVGVIGKHLEDIIPDLDVISANFPSDVKQSIAAIARRREL 112

Query: 103 LADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLL 158
           L DDVI+SL DSSWE LD+SGS+VSDFGL ++ + CKSL+AVDI    +ITAAGVSE + 
Sbjct: 113 LNDDVIISLVDSSWETLDVSGSEVSDFGLAEIGKTCKSLRAVDISRCNKITAAGVSELVQ 172

Query: 159 HCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWP 218
           HC SLETLRCGG PRS++ ARR L I KP+L+D+EGDSWEEL   +I +GAQSLRW VWP
Sbjct: 173 HCCSLETLRCGGCPRSDYTARRSLDIFKPRLDDIEGDSWEELDTAEIANGAQSLRWLVWP 232

Query: 219 NIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPR 278
            +DKDS+E+ STECPRI +NPKPSPFGFRG +VP EA P+I LD+  + DIDP  WAV R
Sbjct: 233 KVDKDSLEIFSTECPRITINPKPSPFGFRGKQVPGEALPNIALDEHTIVDIDPKTWAVGR 292

Query: 279 -FASMGISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSA 337
             A   IS S  + +ELS+AEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWM TST A
Sbjct: 293 STARAPISPS--NTSELSLAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMTTSTRA 350

Query: 338 KAIALASKATKSLSSR 353
           KA+ALAS+A+KSL SR
Sbjct: 351 KALALASQASKSLQSR 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553046|ref|XP_003544869.1| PREDICTED: uncharacterized protein LOC100784617 [Glycine max]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/358 (62%), Positives = 272/358 (75%), Gaps = 14/358 (3%)

Query: 1   MERNEAATKNKTTSLKKLDLYPVQNLTERNEATKNVTAFLKNLQFNSRLPHEKSKPPSLV 60
           M++ + A K   TSL+ LDL P  N+  ++  +      + + QF   LP  K+KPPSLV
Sbjct: 1   MDKGKGA-KALATSLQNLDLNPPSNVKSKSSIS------ITHPQFPGLLPM-KTKPPSLV 52

Query: 61  SLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILD 120
           SLC+G++G+HLEDII DL EIAIN P DIKIA+A+IARRRKLL DD++++LAD+SWEILD
Sbjct: 53  SLCIGVLGRHLEDIIADLSEIAINLPADIKIAVAAIARRRKLLNDDILIALADTSWEILD 112

Query: 121 ISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNH 176
           +SGSDVSDFGL+K A++C+ +KA+DI    +ITA G+SE + HCH LETLRCGG PR+++
Sbjct: 113 VSGSDVSDFGLIKAAEVCRFIKALDISRCTKITANGISELVKHCHLLETLRCGGCPRTDN 172

Query: 177 AARRCLGILKPKLND-VEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRI 235
            ARRCLGI KPK +D VE DSWEEL   +I  GAQSLRW VWPNIDK+S+E  STECPR+
Sbjct: 173 TARRCLGIFKPKFDDYVEEDSWEELDTKEIASGAQSLRWLVWPNIDKNSLEDFSTECPRV 232

Query: 236 IVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELS 295
           +VNPK SPFGF+G EVPREA  +I LDD  V DIDP  W +  FA   IS S  S  ELS
Sbjct: 233 VVNPKSSPFGFKGTEVPREALQNIILDDEVVKDIDPRTWTMHGFALKPISPSSSS-TELS 291

Query: 296 MAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKATKSLSSR 353
           +AEKFRLAFVERD RLAPKRAKNARQHQRRA RE M  ST AKA+ LAS+A+KSL  R
Sbjct: 292 VAEKFRLAFVERDNRLAPKRAKNARQHQRRAVRELMLMSTRAKAMVLASQASKSLHGR 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806726|ref|NP_001242271.1| uncharacterized protein LOC100797026 [Glycine max] gi|255639475|gb|ACU20032.1| unknown [Glycine max]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/358 (62%), Positives = 270/358 (75%), Gaps = 14/358 (3%)

Query: 1   MERNEAATKNKTTSLKKLDLYPVQNLTERNEATKNVTAFLKNLQFNSRLPHEKSKPPSLV 60
           M++ + A K   TSL+ LDL P  N+  ++  T      + + QF   LP +K+KP SLV
Sbjct: 1   MDKGKGA-KALATSLQNLDLNPPSNIKSKSSIT------IAHPQFPGLLP-KKAKPLSLV 52

Query: 61  SLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILD 120
           SLC+G++G+HLEDII DL EIAIN P DIKIA+A+IARRRKLL DDV+++LAD+SWEILD
Sbjct: 53  SLCVGVLGRHLEDIIADLSEIAINLPADIKIAVAAIARRRKLLNDDVLIALADTSWEILD 112

Query: 121 ISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNH 176
           +SGSDVSDFGL+K A++C+ +KA+DI    +ITA G+SE + HC  LETLRCGG PRS++
Sbjct: 113 VSGSDVSDFGLIKAAEVCRFIKALDISRCTKITANGISELVKHCRLLETLRCGGCPRSDN 172

Query: 177 AARRCLGILKPKLND-VEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRI 235
            ARRCLGI KPK +D VE DSWEEL   +I  GAQSL W VWPNIDK+S+E  STECPR+
Sbjct: 173 TARRCLGIFKPKFDDYVEEDSWEELDTKEIASGAQSLGWLVWPNIDKNSLEDFSTECPRV 232

Query: 236 IVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELS 295
           +VNPK SPFGF+G EVP+EA  +I LDD  V DIDP  W +  FA   +S S LS  ELS
Sbjct: 233 MVNPKSSPFGFKGTEVPQEALQNILLDDEVVKDIDPRTWTMHGFALKPMSPS-LSSTELS 291

Query: 296 MAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKATKSLSSR 353
           +AEKFRLAFVERD RLAPKRAKNARQHQRRA RE M  ST AKA+ LAS+ +KSL  R
Sbjct: 292 VAEKFRLAFVERDNRLAPKRAKNARQHQRRAVRELMLISTRAKAMVLASQVSKSLHGR 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494547|ref|XP_003617562.1| hypothetical protein MTR_5g092970 [Medicago truncatula] gi|355518897|gb|AET00521.1| hypothetical protein MTR_5g092970 [Medicago truncatula] gi|388520841|gb|AFK48482.1| unknown [Medicago truncatula]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 251/323 (77%), Gaps = 7/323 (2%)

Query: 35  NVTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIA 94
           ++T  +   QF   L   K+KPPSLV+LC+G++G+HLEDII DLDEIAI  P +IK+A+A
Sbjct: 34  SITTTITRPQFPGFL--TKTKPPSLVNLCIGLIGRHLEDIIEDLDEIAIGLPAEIKLAVA 91

Query: 95  SIARRRKLLADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITA 150
           +IARRRK L DDV+++LAD+SWEILD+SGSDVSD GLVK A++C+S+KA+DI    +ITA
Sbjct: 92  AIARRRKFLNDDVLIALADASWEILDVSGSDVSDLGLVKAAEVCRSVKALDISRCTKITA 151

Query: 151 AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQ 210
            G+SE + HCHSLETLRCGG PRS++ ARRCL I KPKL  V  DSWEEL   ++ +GAQ
Sbjct: 152 TGISELVKHCHSLETLRCGGCPRSDNTARRCLSIFKPKLEYVAEDSWEELDTKEMANGAQ 211

Query: 211 SLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDID 270
           SLRW VWPNID +S+E  STECPRI+VNPKPSPFGF G +VP EAF +I LDD  V DID
Sbjct: 212 SLRWLVWPNIDNNSLEDFSTECPRIVVNPKPSPFGFMGTQVPFEAFQNIILDDAVVKDID 271

Query: 271 PSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREW 330
           P  W +   A   IS+   S  ELS+AEKFRLAF ERD RLAPKRAKNARQHQRRA R+ 
Sbjct: 272 PKTWTMHGIAKRPISSPSSS-TELSVAEKFRLAFEERDNRLAPKRAKNARQHQRRAARDM 330

Query: 331 METSTSAKAIALASKATKSLSSR 353
           +  STSAKA+ LAS+A+KSL SR
Sbjct: 331 LLMSTSAKAVVLASQASKSLHSR 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116614|ref|XP_002317347.1| predicted protein [Populus trichocarpa] gi|222860412|gb|EEE97959.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/352 (59%), Positives = 260/352 (73%), Gaps = 9/352 (2%)

Query: 9   KNKTTSLKKLDLYPVQNLTERNEATKNVTAFLKN---LQFNSRLPHEKSKPPSLVSLCLG 65
           K  TTSLKKLDL     +T     +   +  L++   L    R P  KSKPPSL+SLCLG
Sbjct: 5   KEITTSLKKLDLNS-NIMTSTPSKSSLFSPALQSPGLLSCRRRRPG-KSKPPSLLSLCLG 62

Query: 66  IVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSD 125
           +VGK+L+DII  L +I+I FP  IK+ IA+IARRRK+L D+VI+ LAD+SWEILDISGS+
Sbjct: 63  VVGKNLQDIIAHLSDISIAFPPHIKMTIAAIARRRKMLCDEVIIPLADTSWEILDISGSE 122

Query: 126 VSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRC 181
           V+D GL++V + CK L+AVDI    +ITA+ VS  + HC SL+TLRCGG PRS++ AR C
Sbjct: 123 VTDSGLIEVTKTCKFLRAVDISRCNKITASSVSVLVEHCKSLQTLRCGGCPRSDYTARCC 182

Query: 182 LGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKP 241
           L +LKPKL+D+ GDSWEEL   +I H A+SL W VWP IDKDS+E+++TECPRI VNPK 
Sbjct: 183 LTLLKPKLDDMVGDSWEELDTAEISHNAESLHWLVWPKIDKDSLEILATECPRISVNPKW 242

Query: 242 SPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFR 301
           SPFGFRG ++P EAFPD  LDD FV +I+PS WA        +S  L +  ELS+AEKFR
Sbjct: 243 SPFGFRGKDIPVEAFPDTALDDLFVQEINPSTWAANGITLKPVSPILSNSKELSLAEKFR 302

Query: 302 LAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKATKSLSSR 353
           LAFVERDTRLAPKRAKNARQHQRR++REWM  S  +KAI LAS+ +KSL  R
Sbjct: 303 LAFVERDTRLAPKRAKNARQHQRRSDREWMTMSAESKAIVLASQVSKSLHGR 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687441|ref|NP_194428.2| uncharacterized protein [Arabidopsis thaliana] gi|63003790|gb|AAY25424.1| At4g26980 [Arabidopsis thaliana] gi|90093278|gb|ABD85152.1| At4g26980 [Arabidopsis thaliana] gi|110737995|dbj|BAF00933.1| hypothetical protein [Arabidopsis thaliana] gi|332659880|gb|AEE85280.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/344 (61%), Positives = 257/344 (74%), Gaps = 18/344 (5%)

Query: 14  SLKKLDLYPVQNLTERNEATKN---VTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVGKH 70
           SLK LDL      T R    +N   V+A++ +    SR+   KSKPPSLVS CLG++GKH
Sbjct: 8   SLKNLDLN-----TNRGRGPENKILVSAYVSS----SRMSPLKSKPPSLVSSCLGVIGKH 58

Query: 71  LEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSDFG 130
           LED+I  L EI++ FP DIK++IA+IARR+KLL DDVI+ LADSSWEILD+SGSDV++FG
Sbjct: 59  LEDMIRCLAEISVIFPADIKMSIAAIARRKKLLDDDVIICLADSSWEILDVSGSDVTNFG 118

Query: 131 LVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186
           L KVA++CKSL+AVDI    +I++ GV E + HC SLETLRCGG P S   ARR L I K
Sbjct: 119 LAKVAEICKSLRAVDISRCNKISSMGVLELVQHCRSLETLRCGGCPSSESTARRSLSIFK 178

Query: 187 PKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGF 246
           P L++VEG++WEE+  ++IGHG QSLRW VWP IDKDS+EM+S+ECPRI+VNPKPS   +
Sbjct: 179 PNLSNVEGETWEEIDTSEIGHGGQSLRWLVWPRIDKDSLEMLSSECPRIVVNPKPSLVAY 238

Query: 247 RGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVE 306
           R  EVPREA PD+ LD+PFV DIDP  W V        S  L   NELS+AEKFRLAF E
Sbjct: 239 RADEVPREALPDVALDEPFVKDIDPKTWVVTGVVQKPTSFPL--SNELSIAEKFRLAFAE 296

Query: 307 RDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKATKSL 350
           RD R+APKRAKNARQ QRRAER+WM +S  AKA+  ASKAT+SL
Sbjct: 297 RDARMAPKRAKNARQRQRRAERDWMMSSDEAKAMVFASKATRSL 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799294|ref|XP_002867531.1| hypothetical protein ARALYDRAFT_492098 [Arabidopsis lyrata subsp. lyrata] gi|297313367|gb|EFH43790.1| hypothetical protein ARALYDRAFT_492098 [Arabidopsis lyrata subsp. lyrata]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/344 (61%), Positives = 254/344 (73%), Gaps = 19/344 (5%)

Query: 14  SLKKLDLYPVQNLTERNEATKN---VTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVGKH 70
           SLK LDL        RN   K    V+A+L + +  S L   KSKPPSLVSLCLG++GKH
Sbjct: 8   SLKNLDL-------NRNRGPKKKILVSAYLSSSRIMSPL---KSKPPSLVSLCLGVIGKH 57

Query: 71  LEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSDFG 130
           LE++I  L +I++ FP DIK++IA+IARR+KLL DDVI SLADSSWEILD+SGSDV++ G
Sbjct: 58  LEEMIPCLADISVIFPADIKMSIAAIARRKKLLDDDVITSLADSSWEILDVSGSDVTNSG 117

Query: 131 LVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186
           L KVA+MCKSL+AVDI    +I++ GV E + HC SLETLRCGG P S   ARR L   K
Sbjct: 118 LAKVAEMCKSLRAVDISRCNKISSMGVLELVQHCRSLETLRCGGCPSSESTARRSLSFFK 177

Query: 187 PKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGF 246
           P L++ EG++WEE+  ++IGHG QSLRW VWP IDKDS+EM+S ECPRI+VNPKPS   +
Sbjct: 178 PNLSNGEGETWEEIDTSEIGHGGQSLRWLVWPRIDKDSLEMLSLECPRIVVNPKPSLVAY 237

Query: 247 RGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVE 306
           R  EVPREA PD+ +D+PFV DIDP  W V         TS L  NEL +AEKFRLAF E
Sbjct: 238 RADEVPREALPDVAVDEPFVKDIDPKTWVVTGVVQK--PTSFLLCNELPIAEKFRLAFAE 295

Query: 307 RDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKATKSL 350
           RD RLAPKRAKNARQ QRRAER+WM +S  AKA+ LASKAT+SL
Sbjct: 296 RDARLAPKRAKNARQRQRRAERDWMMSSDEAKAMVLASKATRSL 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583615|ref|XP_002532563.1| conserved hypothetical protein [Ricinus communis] gi|223527718|gb|EEF29824.1| conserved hypothetical protein [Ricinus communis]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/264 (71%), Positives = 221/264 (83%), Gaps = 4/264 (1%)

Query: 91  IAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---- 146
           +A+A+I+RRRKLL DDVI+SLADSSWEILD+SGSDV+D GL+ +A++CK L+AVDI    
Sbjct: 1   MALAAISRRRKLLTDDVIISLADSSWEILDLSGSDVTDSGLMNIAEICKFLRAVDISRCH 60

Query: 147 RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIG 206
            ITAAGVSE + HC SL+TLRCGG PRS++ AR  L ILKPKLND+EGDSWEEL   +IG
Sbjct: 61  NITAAGVSEVIKHCKSLQTLRCGGCPRSDYCARNSLYILKPKLNDMEGDSWEELDTAEIG 120

Query: 207 HGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFV 266
           HGA+SLRW VWP IDK+S+E+M TECPRIIVNPKPSPFGFRG EVP+EA PD+ LDDP V
Sbjct: 121 HGAESLRWLVWPKIDKNSMEIMDTECPRIIVNPKPSPFGFRGIEVPKEALPDMVLDDPIV 180

Query: 267 NDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRA 326
            DIDP  WA   FA   +++SL S  ELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRA
Sbjct: 181 KDIDPKTWATHGFAPKPVASSLSSSTELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRA 240

Query: 327 EREWMETSTSAKAIALASKATKSL 350
           E+E M  +T AKA+ALAS+A+KSL
Sbjct: 241 EKELMMMNTKAKALALASRASKSL 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4455221|emb|CAB36544.1| putative protein [Arabidopsis thaliana] gi|7269551|emb|CAB79553.1| putative protein [Arabidopsis thaliana]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/330 (60%), Positives = 238/330 (72%), Gaps = 34/330 (10%)

Query: 53  KSKPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLA 112
           KSKPPSLVS CLG++GKHLED+I  L EI++ FP DIK++IA+IARR+KLL DDVI+ LA
Sbjct: 73  KSKPPSLVSSCLGVIGKHLEDMIRCLAEISVIFPADIKMSIAAIARRKKLLDDDVIICLA 132

Query: 113 DSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIR------------------------- 147
           DSSWEILD+SGSDV++FGL KVA++CKSL+AVDIR                         
Sbjct: 133 DSSWEILDVSGSDVTNFGLAKVAEICKSLRAVDIRYYSCLLRIYSGLAGSLVWGFCMLDK 192

Query: 148 -------ITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEEL 200
                  I++ GV E + HC SLETLRCGG P S   ARR L I KP L++VEG++WEE+
Sbjct: 193 WCSRCNKISSMGVLELVQHCRSLETLRCGGCPSSESTARRSLSIFKPNLSNVEGETWEEI 252

Query: 201 VNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDIT 260
             ++IGHG QSLRW VWP IDKDS+EM+S+ECPRI+VNPKPS   +R  EVPREA PD+ 
Sbjct: 253 DTSEIGHGGQSLRWLVWPRIDKDSLEMLSSECPRIVVNPKPSLVAYRADEVPREALPDVA 312

Query: 261 LDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNAR 320
           LD+PFV DIDP  W V         TS    NELS+AEKFRLAF ERD R+APKRAKNAR
Sbjct: 313 LDEPFVKDIDPKTWVVTGVVQK--PTSFPLSNELSIAEKFRLAFAERDARMAPKRAKNAR 370

Query: 321 QHQRRAEREWMETSTSAKAIALASKATKSL 350
           Q QRRAER+WM +S  AKA+  ASKAT+SL
Sbjct: 371 QRQRRAERDWMMSSDEAKAMVFASKATRSL 400

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
TAIR|locus:2116307	343	AT4G26980 "AT4G26980" [Arabido	0.867	0.895	0.584	1.3e-93

TAIR|locus:2116307 AT4G26980 "AT4G26980" [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 190/325 (58%), Positives = 229/325 (70%)

Query:    14 SLKKLDLYPVQNLTERNEATKN---VTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVGKH 70
             SLK LDL    N T R    +N   V+A++ +    SR+   KSKPPSLVS CLG++GKH
Sbjct:     8 SLKNLDL----N-TNRGRGPENKILVSAYVSS----SRMSPLKSKPPSLVSSCLGVIGKH 58

Query:    71 LEDIIGDLDEIAINFPVDXXXXXXXXXXXXXXXXDDVIMSLADSSWEILDISGSDVSDFG 130
             LED+I  L EI++ FP D                DDVI+ LADSSWEILD+SGSDV++FG
Sbjct:    59 LEDMIRCLAEISVIFPADIKMSIAAIARRKKLLDDDVIICLADSSWEILDVSGSDVTNFG 118

Query:   131 LVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186
             L KVA++CKSL+AVDI    +I++ GV E + HC SLETLRCGG P S   ARR L I K
Sbjct:   119 LAKVAEICKSLRAVDISRCNKISSMGVLELVQHCRSLETLRCGGCPSSESTARRSLSIFK 178

Query:   187 PKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGF 246
             P L++VEG++WEE+  ++IGHG QSLRW VWP IDKDS+EM+S+ECPRI+VNPKPS   +
Sbjct:   179 PNLSNVEGETWEEIDTSEIGHGGQSLRWLVWPRIDKDSLEMLSSECPRIVVNPKPSLVAY 238

Query:   247 RGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVE 306
             R  EVPREA PD+ LD+PFV DIDP  W V         TS    NELS+AEKFRLAF E
Sbjct:   239 RADEVPREALPDVALDEPFVKDIDPKTWVVTGVVQK--PTSFPLSNELSIAEKFRLAFAE 296

Query:   307 RDTRLAPKRAKNARQHQRRAEREWM 331
             RD R+APKRAKNARQ QRRAER+WM
Sbjct:   297 RDARMAPKRAKNARQRQRRAERDWM 321


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      354       318   0.00083  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  232 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.88u 0.09s 23.97t   Elapsed:  00:00:02
  Total cpu time:  23.88u 0.09s 23.97t   Elapsed:  00:00:02
  Start:  Mon May 20 19:55:52 2013   End:  Mon May 20 19:55:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	354
KOG4341	483	consensus F-box protein containing LRR [General fu	99.7
KOG4341	483	consensus F-box protein containing LRR [General fu	99.58
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.46
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.37
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.09
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.06
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.92
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.87
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.8
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.72
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.63
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.63
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.37
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.16
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.94
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	96.64
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	96.53
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.43
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.34
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	95.92
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.59
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.57
KOG4308	478	consensus LRR-containing protein [Function unknown	95.47
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.39
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.6
PLN03210	1153	Resistant to P. syringae 6; Provisional	94.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.07
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	93.59
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.12
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	92.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	91.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	91.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	90.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	89.41
KOG4308	478	consensus LRR-containing protein [Function unknown	89.03
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	88.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	88.52
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	86.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	86.04
PLN03150	623	hypothetical protein; Provisional	85.81
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	85.63
PRK15386	426	type III secretion protein GogB; Provisional	83.38
PLN03150	623	hypothetical protein; Provisional	83.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	82.97
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	80.94
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	80.73
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	80.71

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.70  E-value=4.3e-18  Score=168.30  Aligned_cols=166  Identities=17%  Similarity=0.311  Sum_probs=145.5

Q ss_pred             CCCHHHHHHhhc--CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCC
Q 018571          102 LLADDVIMSLAD--SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRS  174 (354)
Q Consensus       102 ~ltD~~L~~la~--~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~I  174 (354)
                      -+.|..+..++.  |++++|+++|| +|||..+..++..|++|++|+|    .|||..++.++++|++|++||++||++|
T Consensus       150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi  229 (483)
T KOG4341|consen  150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI  229 (483)
T ss_pred             cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence            378888988887  99999999999 9999999999999999999999    8999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCcEeeCCC--------------------------c-cccchhh--hhccCccccccc---cCCCCH
Q 018571          175 NHAARRCLGILKPKLNDVEGDS--------------------------W-EELVNTD--IGHGAQSLRWFV---WPNIDK  222 (354)
Q Consensus       175 tD~sL~~La~~cp~L~~L~ls~--------------------------~-~~td~~~--i~~~~~~L~~L~---C~~ITD  222 (354)
                      ++.+++++.++|..|+.+...|                          | .++|.++  +..+|..|+.|.   |.++||
T Consensus       230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d  309 (483)
T KOG4341|consen  230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD  309 (483)
T ss_pred             hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence            9988888888777765543333                          2 2445443  367788888887   999999


Q ss_pred             HHHHHHHhcCCcceecCCCCceeecCCC-CCccccccccCCCCccccccccc
Q 018571          223 DSIEMMSTECPRIIVNPKPSPFGFRGFE-VPREAFPDITLDDPFVNDIDPSA  273 (354)
Q Consensus       223 ~~l~~L~~~Cp~L~~~p~~~~L~l~gC~-~s~~al~~v~~~~~~v~~~~~~~  273 (354)
                      ..+.++.++|++|++      +-+.+|. +++.++..+.-.++.+.+++.+.
T Consensus       310 ~~l~aLg~~~~~L~~------l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~  355 (483)
T KOG4341|consen  310 EVLWALGQHCHNLQV------LELSGCQQFSDRGFTMLGRNCPHLERLDLEE  355 (483)
T ss_pred             HHHHHHhcCCCceEE------EeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence            999999999999999      9999998 89999999999999999988865

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.58  E-value=7.6e-16  Score=152.49  Aligned_cols=135  Identities=20%  Similarity=0.290  Sum_probs=102.5

Q ss_pred             CCHHHHHHhhc--CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE------------------------------eec
Q 018571          103 LADDVIMSLAD--SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI------------------------------RIT  149 (354)
Q Consensus       103 ltD~~L~~la~--~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL------------------------------~IT  149 (354)
                      +||..++.+++  ++|++|+++.| +|++.|+..+.++|++|+.+.+                              .||
T Consensus       203 iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT  282 (483)
T KOG4341|consen  203 ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT  282 (483)
T ss_pred             hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence            45555555554  55555555555 5555555555555544444422                              589


Q ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCcc-ccchhh--hhccCccccccc---cCCCCHH
Q 018571          150 AAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWE-ELVNTD--IGHGAQSLRWFV---WPNIDKD  223 (354)
Q Consensus       150 d~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~-~td~~~--i~~~~~~L~~L~---C~~ITD~  223 (354)
                      |.++..++.+|..||+|+.++|..++|..+.+|+.+|++|+.|.+.+|. .+|.|.  ++.+|..|+.++   |..++|.
T Consensus       283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~  362 (483)
T KOG4341|consen  283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG  362 (483)
T ss_pred             chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence            9999999999999999999999999999999999999999999998885 566664  478888888887   8888888


Q ss_pred             HHHHHHhcCCccee
Q 018571          224 SIEMMSTECPRIIV  237 (354)
Q Consensus       224 ~l~~L~~~Cp~L~~  237 (354)
                      .+..++.+||.|++
T Consensus       363 tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  363 TLASLSRNCPRLRV  376 (483)
T ss_pred             hHhhhccCCchhcc
Confidence            88889999999887

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.46  E-value=9.2e-14  Score=138.88  Aligned_cols=162  Identities=20%  Similarity=0.251  Sum_probs=92.8

Q ss_pred             CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCC
Q 018571          114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK  188 (354)
Q Consensus       114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~  188 (354)
                      ++|++|++++| .|||.|+..++..|++|+.|.+    .+||.|+..++..|++|++|++++|..++|.++..++.+||+
T Consensus       243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~  322 (482)
T KOG1947|consen  243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPN  322 (482)
T ss_pred             CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcc
Confidence            56666667777 4777777777777777777776    467777777777777777777777777777777777777777


Q ss_pred             CcEeeCCCcc----ccchh--------------hhhccCccccccc---cCCCCHHHHHHHHhcCCcce-e-----cCC-
Q 018571          189 LNDVEGDSWE----ELVNT--------------DIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRII-V-----NPK-  240 (354)
Q Consensus       189 L~~L~ls~~~----~td~~--------------~i~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~-~-----~p~-  240 (354)
                      |+.|.+.+..    +++.+              .++.+|+.|+.+.   |. +++.++..+..+||.|+ .     ... 
T Consensus       323 l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~  401 (482)
T KOG1947|consen  323 LRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSD  401 (482)
T ss_pred             hhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCC
Confidence            6665432221    11111              1234455555544   44 55555555566666551 0     000 


Q ss_pred             -CCceeecCCC-CCccccccccCCCCcccccccccccc
Q 018571          241 -PSPFGFRGFE-VPREAFPDITLDDPFVNDIDPSAWAV  276 (354)
Q Consensus       241 -~~~L~l~gC~-~s~~al~~v~~~~~~v~~~~~~~W~v  276 (354)
                       ..-+++..|. ++...+......+..+.+++...+..
T Consensus       402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             ccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence             0116666666 45555544444344444444444433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.37  E-value=9.2e-13  Score=131.68  Aligned_cols=131  Identities=21%  Similarity=0.267  Sum_probs=64.7

Q ss_pred             CCccEEEeec-C-CCCHHH--HHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhc
Q 018571          114 SSWEILDISG-S-DVSDFG--LVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL  185 (354)
Q Consensus       114 ~~L~~LdLs~-C-~ITD~g--L~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~  185 (354)
                      ++|+.|++++ | .+++.+  ...++..|++|++|++    .|||.|+.+++..|++|++|.+++|..+||.++..++..
T Consensus       214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~  293 (482)
T KOG1947|consen  214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER  293 (482)
T ss_pred             chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence            4555555554 2 333333  2334444555555555    355555555555555555555555555555555555555


Q ss_pred             CCCCcEeeCCCcccc-chhhh--hccCccccccc------cCCCCHHHHHHHHhcCC-cceecCCCCceeecCCC
Q 018571          186 KPKLNDVEGDSWEEL-VNTDI--GHGAQSLRWFV------WPNIDKDSIEMMSTECP-RIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       186 cp~L~~L~ls~~~~t-d~~~i--~~~~~~L~~L~------C~~ITD~~l~~L~~~Cp-~L~~~p~~~~L~l~gC~  250 (354)
                      ||.|++|++++|..+ |.++.  +..|++|+.+.      |..|++.++..+...++ .+..      +.+.+|+
T Consensus       294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~------~~~~~~~  362 (482)
T KOG1947|consen  294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAE------LILRSCP  362 (482)
T ss_pred             cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhH------HHHhcCC
Confidence            555555555554332 33322  33344443332      34455555555555553 4454      5555555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.8e-10  Score=110.88  Aligned_cols=141  Identities=16%  Similarity=0.166  Sum_probs=90.4

Q ss_pred             CCCHHHHHHhhc-CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHH-hcCCCCCEEEecCCC-C
Q 018571          102 LLADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFL-LHCHSLETLRCGGSP-R  173 (354)
Q Consensus       102 ~ltD~~L~~la~-~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La-~~Cp~Le~L~L~gC~-~  173 (354)
                      .++|.....++. .+|+.|||++| ++|..|+..+...|..|..|+|    ..++. +.+++ .--++|..|||+||. .
T Consensus       221 ~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrn  299 (419)
T KOG2120|consen  221 RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRN  299 (419)
T ss_pred             ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhh
Confidence            478888888987 99999999999 9999999999999999999999    22333 33332 235566666666663 3


Q ss_pred             CcHHHHHHHHhcCCCCcEeeCCCccccchhhh--hccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecC
Q 018571          174 SNHAARRCLGILKPKLNDVEGDSWEELVNTDI--GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRG  248 (354)
Q Consensus       174 ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i--~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~g  248 (354)
                      ..+.-+..+++.||+|.+||++.+....++.+  -...+-|++|.   |..|..+.+..+ ..-|.|.+      |++.|
T Consensus       300 l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~y------Ldv~g  372 (419)
T KOG2120|consen  300 LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVY------LDVFG  372 (419)
T ss_pred             hhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeee-ccCcceEE------EEecc
Confidence            34445555666666666666665543333332  22334444444   666665555443 34455666      66666


Q ss_pred             CC
Q 018571          249 FE  250 (354)
Q Consensus       249 C~  250 (354)
                      |-
T Consensus       373 ~v  374 (419)
T KOG2120|consen  373 CV  374 (419)
T ss_pred             cc
Confidence            63

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=8.6e-11  Score=113.07  Aligned_cols=130  Identities=17%  Similarity=0.227  Sum_probs=112.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ..+++|||+...||-..+..+...|.+|+.|.|   +++|.-+..||++ .+|+.|||++|.++|..+++.+-.+|..|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHh
Confidence            569999999999999999999989999999999   9999999999974 889999999999999999999999999999


Q ss_pred             EeeCCCccccchhh---hhccCccccccc---c-CCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          191 DVEGDSWEELVNTD---IGHGAQSLRWFV---W-PNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       191 ~L~ls~~~~td~~~---i~~~~~~L~~L~---C-~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      .|++++|..+.+.+   +....++|..|+   | .++-+.-+..+++.||+|..      ||+..|-
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~------LDLSD~v  324 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH------LDLSDSV  324 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee------ecccccc
Confidence            99999987766543   355566677766   3 46677778888888888888      8887776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.92  E-value=4.9e-09  Score=99.87  Aligned_cols=135  Identities=14%  Similarity=0.130  Sum_probs=83.0

Q ss_pred             CCccEEEeecCCCCHHHHHHH---HHhCCCCcEEEE---eecHHHHHHHHhc---CCCCCEEEecCCCCCcHHHHHHHH-
Q 018571          114 SSWEILDISGSDVSDFGLVKV---AQMCKSLKAVDI---RITAAGVSEFLLH---CHSLETLRCGGSPRSNHAARRCLG-  183 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~l---a~~C~~L~~LdL---~ITd~gl~~La~~---Cp~Le~L~L~gC~~ItD~sL~~La-  183 (354)
                      ++|++|+|++|.+++.++..+   ...|++|++|++   .+++.++..++..   +++|++|++++| .+++.+...++ 
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~  215 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAE  215 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHH
Confidence            567777777777765554433   233567777777   6676666665543   347777777776 45555554433 


Q ss_pred             --hcCCCCcEeeCCCccccchhhh--hcc----Cccccccc--cCCCCHHHHHHHHhcC---CcceecCCCCceeecCCC
Q 018571          184 --ILKPKLNDVEGDSWEELVNTDI--GHG----AQSLRWFV--WPNIDKDSIEMMSTEC---PRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       184 --~~cp~L~~L~ls~~~~td~~~i--~~~----~~~L~~L~--C~~ITD~~l~~L~~~C---p~L~~~p~~~~L~l~gC~  250 (354)
                        ..+++|++|+++++.++|.++.  ...    .+.|+.|+  +..+||.+...+...+   ++|+.      +++.++.
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~------l~l~~N~  289 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE------LDLRGNK  289 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE------EECCCCC
Confidence              3466777777777776665442  222    35677776  5567766666555444   35666      7777777


Q ss_pred             CCccc
Q 018571          251 VPREA  255 (354)
Q Consensus       251 ~s~~a  255 (354)
                      +++++
T Consensus       290 l~~~~  294 (319)
T cd00116         290 FGEEG  294 (319)
T ss_pred             CcHHH
Confidence            66553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.87  E-value=1.2e-08  Score=97.27  Aligned_cols=136  Identities=15%  Similarity=0.130  Sum_probs=103.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHh---C-CCCcEEEE---eecHHHHHH---HHhcCCCCCEEEecCCCCCcHHHHHHHH
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQM---C-KSLKAVDI---RITAAGVSE---FLLHCHSLETLRCGGSPRSNHAARRCLG  183 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~---C-~~L~~LdL---~ITd~gl~~---La~~Cp~Le~L~L~gC~~ItD~sL~~La  183 (354)
                      ++|++|++++|.+++.++..+...   + ++|+.|++   .+++.++..   ...+|++|++|++++|. +++.++..++
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~  186 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALA  186 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHH
Confidence            559999999999998888765433   4 88999999   777555443   34567889999999874 6767777666


Q ss_pred             hcC---CCCcEeeCCCccccchhh--h---hccCccccccc--cCCCCHHHHHHHHhcC----CcceecCCCCceeecCC
Q 018571          184 ILK---PKLNDVEGDSWEELVNTD--I---GHGAQSLRWFV--WPNIDKDSIEMMSTEC----PRIIVNPKPSPFGFRGF  249 (354)
Q Consensus       184 ~~c---p~L~~L~ls~~~~td~~~--i---~~~~~~L~~L~--C~~ITD~~l~~L~~~C----p~L~~~p~~~~L~l~gC  249 (354)
                      ..+   +.|++|+++++.+.+.+.  +   ...+++|+.|+  ...++|.++..+...+    +.|+.      +++.+|
T Consensus       187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~------L~l~~n  260 (319)
T cd00116         187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT------LSLSCN  260 (319)
T ss_pred             HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE------EEccCC
Confidence            444   599999999988776653  2   34567899888  4469999999888876    68888      999999


Q ss_pred             CCCcccc
Q 018571          250 EVPREAF  256 (354)
Q Consensus       250 ~~s~~al  256 (354)
                      .+++++.
T Consensus       261 ~i~~~~~  267 (319)
T cd00116         261 DITDDGA  267 (319)
T ss_pred             CCCcHHH
Confidence            9865444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=1.9e-06  Score=79.27  Aligned_cols=81  Identities=21%  Similarity=0.219  Sum_probs=74.6

Q ss_pred             CccEEEeecCCCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       115 ~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      .++.+|-++|.|.-+|+..+-. ++.|+.|.+    .+.|.|+.-|+.-.++|+.|+|+||++|||.|+..|.. .++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence            4788999999999999999987 999999999    99999999999999999999999999999999999987 68999


Q ss_pred             EeeCCCc
Q 018571          191 DVEGDSW  197 (354)
Q Consensus       191 ~L~ls~~  197 (354)
                      .|.+.+.
T Consensus       180 ~L~l~~l  186 (221)
T KOG3864|consen  180 RLHLYDL  186 (221)
T ss_pred             HHHhcCc
Confidence            9877654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=2.9e-05  Score=83.73  Aligned_cols=59  Identities=27%  Similarity=0.301  Sum_probs=52.3

Q ss_pred             CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCC
Q 018571          114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSP  172 (354)
Q Consensus       114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~  172 (354)
                      .+|++||++|. .++..-...++..+|.|++|.+   .+.+.-...+..+.|+|.+||++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn  184 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN  184 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC
Confidence            78999999998 7888888999999999999999   55555588999999999999999975

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.80  E-value=4e-05  Score=75.53  Aligned_cols=135  Identities=15%  Similarity=0.139  Sum_probs=86.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHH------------hCCCCcEEEE---eecHHH---HHHHHhcCCCCCEEEecCCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQ------------MCKSLKAVDI---RITAAG---VSEFLLHCHSLETLRCGGSPRSN  175 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~------------~C~~L~~LdL---~ITd~g---l~~La~~Cp~Le~L~L~gC~~It  175 (354)
                      .+|++|.|.+|+++..|=..|+.            .-++|+++..   ++-|.|   +..+.+.+|.|+.+.+.. ..|.
T Consensus       120 ~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~  198 (382)
T KOG1909|consen  120 TDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIR  198 (382)
T ss_pred             cCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEec-cccc
Confidence            56777777777666555444332            1356666666   444544   455556788999998885 4555


Q ss_pred             HHHHHHH---HhcCCCCcEeeCCCccccchhhh--h---ccCccccccc--cCCCCHHHHHHH----HhcCCcceecCCC
Q 018571          176 HAARRCL---GILKPKLNDVEGDSWEELVNTDI--G---HGAQSLRWFV--WPNIDKDSIEMM----STECPRIIVNPKP  241 (354)
Q Consensus       176 D~sL~~L---a~~cp~L~~L~ls~~~~td~~~i--~---~~~~~L~~L~--C~~ITD~~l~~L----~~~Cp~L~~~p~~  241 (354)
                      ..++.++   ..+||+|+.||+...-.+..|.+  +   ...++|++|+  -.++.+.|..++    ....|.|++    
T Consensus       199 ~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~v----  274 (382)
T KOG1909|consen  199 PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEV----  274 (382)
T ss_pred             CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCce----
Confidence            5555443   35799999999876666655533  3   3345677776  336666665544    456788888    


Q ss_pred             CceeecCCCCCccc
Q 018571          242 SPFGFRGFEVPREA  255 (354)
Q Consensus       242 ~~L~l~gC~~s~~a  255 (354)
                        +.|.||.+++++
T Consensus       275 --l~l~gNeIt~da  286 (382)
T KOG1909|consen  275 --LELAGNEITRDA  286 (382)
T ss_pred             --eccCcchhHHHH
Confidence              999999976655

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.72  E-value=3.1e-05  Score=48.06  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=23.9

Q ss_pred             CCCCCEEEecCCCCCcHHHHHHHHh
Q 018571          160 CHSLETLRCGGSPRSNHAARRCLGI  184 (354)
Q Consensus       160 Cp~Le~L~L~gC~~ItD~sL~~La~  184 (354)
                      ||+|++|+|++|..|||.++.+|+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            8999999999999999999999986

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=3.8e-05  Score=77.60  Aligned_cols=137  Identities=15%  Similarity=0.106  Sum_probs=82.4

Q ss_pred             CCccEEEeecCC-CCHHHHHHHHHhCCCCcEEEE------eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          114 SSWEILDISGSD-VSDFGLVKVAQMCKSLKAVDI------RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       114 ~~L~~LdLs~C~-ITD~gL~~la~~C~~L~~LdL------~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      ++++.||||++- -.-.-+..|+...|+|+.|+|      ..++.-...   ..+.|+.|.|++|. ++-..+..+...|
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CG-ls~k~V~~~~~~f  221 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCG-LSWKDVQWILLTF  221 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCC-CCHHHHHHHHHhC
Confidence            666666666652 223445566666666666666      111111111   34556666777774 4466677777778


Q ss_pred             CCCcEeeCCCcc-ccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCcccccccc
Q 018571          187 PKLNDVEGDSWE-ELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDIT  260 (354)
Q Consensus       187 p~L~~L~ls~~~-~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~  260 (354)
                      |.|+.|++.+.. ++....-....++|++|+  -.++-|..........|.|..      +++..|.+++-+.|.+.
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~------Lnls~tgi~si~~~d~~  292 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ------LNLSSTGIASIAEPDVE  292 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh------hhccccCcchhcCCCcc
Confidence            888888776653 222222234456777777  344444444456677888888      99999998888877773

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.63  E-value=2.9e-05  Score=70.16  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=30.0

Q ss_pred             CccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcE
Q 018571          115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLND  191 (354)
Q Consensus       115 ~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~  191 (354)
                      .+++|+|.|++|+.  +..+...+.+|+.|||   .|+.  +.-+. ++++|++|++++ ..|++-+ ..+..+||+|++
T Consensus        20 ~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~L~~   92 (175)
T PF14580_consen   20 KLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSN-NRISSIS-EGLDKNLPNLQE   92 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--S-S---S-C-HHHHHH-TT--E
T ss_pred             cccccccccccccc--ccchhhhhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCC-CCCCccc-cchHHhCCcCCE
Confidence            45666666665554  2334434566666666   4432  12222 356666666664 3343321 123334666666


Q ss_pred             eeCCCccccchhhh--hccCccccccc-c-CCCC--HHHHHHHHhcCCccee
Q 018571          192 VEGDSWEELVNTDI--GHGAQSLRWFV-W-PNID--KDSIEMMSTECPRIIV  237 (354)
Q Consensus       192 L~ls~~~~td~~~i--~~~~~~L~~L~-C-~~IT--D~~l~~L~~~Cp~L~~  237 (354)
                      |++++..+.+-+.+  -..+++|+.|+ + ..|+  ..--..+...||+|+.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~  144 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV  144 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence            66655554443322  12344554444 0 0111  1224556677777777

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.37  E-value=0.00069  Score=67.00  Aligned_cols=131  Identities=18%  Similarity=0.214  Sum_probs=97.8

Q ss_pred             CCccEEEeecCCCCHHHHH---HHHHhCCCCcEEEE---eecHHHHHHHH---hcCCCCCEEEecCCCCCcHHHHHHHHh
Q 018571          114 SSWEILDISGSDVSDFGLV---KVAQMCKSLKAVDI---RITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCLGI  184 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~---~la~~C~~L~~LdL---~ITd~gl~~La---~~Cp~Le~L~L~gC~~ItD~sL~~La~  184 (354)
                      +.|+.+..+.+.+.|.|-.   .+.+.+|.|+.+.+   .|...|+.+++   .+||+|++|||..-. .|-.+-.+|+.
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Lak  235 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAK  235 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHH
Confidence            7899999999877766654   45567899999999   77777775554   589999999998754 44444445554


Q ss_pred             ---cCCCCcEeeCCCccccchhhh------hccCccccccc--cCCCCHHHHHHHHh---cCCcceecCCCCceeecCCC
Q 018571          185 ---LKPKLNDVEGDSWEELVNTDI------GHGAQSLRWFV--WPNIDKDSIEMMST---ECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       185 ---~cp~L~~L~ls~~~~td~~~i------~~~~~~L~~L~--C~~ITD~~l~~L~~---~Cp~L~~~p~~~~L~l~gC~  250 (354)
                         ..|+|+.|+++.|-+.+.|.+      -.+.++|+.|.  ...||-++...++.   .-|.|..      |++.||.
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k------LnLngN~  309 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEK------LNLNGNR  309 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHH------hcCCccc
Confidence               356777889999988888864      34578888887  67888888776643   3577777      9999999


Q ss_pred             C
Q 018571          251 V  251 (354)
Q Consensus       251 ~  251 (354)
                      .
T Consensus       310 l  310 (382)
T KOG1909|consen  310 L  310 (382)
T ss_pred             c
Confidence            7

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.16  E-value=0.0013  Score=71.08  Aligned_cols=163  Identities=17%  Similarity=0.116  Sum_probs=115.8

Q ss_pred             CCHHHHHHhhcCCccEEEeecC-CCCHHHHH-----------HHH--HhCCCCcEEEE----eecHHHHHHHHhcCCCCC
Q 018571          103 LADDVIMSLADSSWEILDISGS-DVSDFGLV-----------KVA--QMCKSLKAVDI----RITAAGVSEFLLHCHSLE  164 (354)
Q Consensus       103 ltD~~L~~la~~~L~~LdLs~C-~ITD~gL~-----------~la--~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le  164 (354)
                      +....+..+....|++|.|++. .+......           .+.  ..=.+|++||+    .+...=...++..+|.|+
T Consensus        72 ~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~  151 (699)
T KOG3665|consen   72 LQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLR  151 (699)
T ss_pred             cchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccc
Confidence            4556666666666999999886 33322222           111  11369999999    555566888999999999


Q ss_pred             EEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccch-hhh-----------------------hccCccccccc---c
Q 018571          165 TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVN-TDI-----------------------GHGAQSLRWFV---W  217 (354)
Q Consensus       165 ~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~-~~i-----------------------~~~~~~L~~L~---C  217 (354)
                      +|.++|=.-..|+ ...+..+.|+|..||++++.+++- |+.                       -..+++|+.|+   -
T Consensus       152 sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  152 SLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             eEEecCceecchh-HHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            9999986666665 777888999999999999988874 321                       13456777776   2


Q ss_pred             CCCCHH-HHH---HHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcccccccc
Q 018571          218 PNIDKD-SIE---MMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPS  272 (354)
Q Consensus       218 ~~ITD~-~l~---~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~~~~~  272 (354)
                      .+.++. -+.   .....+|+|+.      ||..|..+..+.+..+....|.++++...
T Consensus       231 ~~~~~~~ii~qYlec~~~LpeLrf------LDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  231 KNNDDTKIIEQYLECGMVLPELRF------LDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             ccccchHHHHHHHHhcccCccccE------EecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            222222 111   12356899999      99999889999999999999999987654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.00053  Score=63.35  Aligned_cols=89  Identities=24%  Similarity=0.292  Sum_probs=74.6

Q ss_pred             CCHHHHHHhhc-CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcH
Q 018571          103 LADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNH  176 (354)
Q Consensus       103 ltD~~L~~la~-~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD  176 (354)
                      |..+++..+.+ +.++.|.+.+| .+.|.||..++..-++|+.|+|    +|||.|+..|- ..++|+.|.+.+-+.+..
T Consensus       113 I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  113 IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCchhhhc
Confidence            66778888888 99999999999 9999999999999999999999    99999999987 589999999998877765


Q ss_pred             HHHH--HHHhcCCCCcEe
Q 018571          177 AARR--CLGILKPKLNDV  192 (354)
Q Consensus       177 ~sL~--~La~~cp~L~~L  192 (354)
                      -...  .|-.-+|+++..
T Consensus       192 ~e~~~~~Le~aLP~c~I~  209 (221)
T KOG3864|consen  192 LELVQRQLEEALPKCDIV  209 (221)
T ss_pred             hHHHHHHHHHhCccccee
Confidence            3332  344557777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.94  E-value=8.1e-05  Score=67.24  Aligned_cols=134  Identities=14%  Similarity=0.172  Sum_probs=47.9

Q ss_pred             CCHHHHHHHHHh--CCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCcccc
Q 018571          126 VSDFGLVKVAQM--CKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEEL  200 (354)
Q Consensus       126 ITD~gL~~la~~--C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~t  200 (354)
                      +|-+.+..++..  |-++++|+|   .|+.  |..+...+.+|++|++++|.-.+=+   .+. .+++|+.|+++...++
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~---~l~-~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKLE---GLP-GLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS--S--T---T-----TT--EEE--SS---
T ss_pred             cccccccccccccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCcccc---Ccc-ChhhhhhcccCCCCCC
Confidence            455666666543  567899999   5544  5667666889999999988533322   333 3799999999998887


Q ss_pred             chhh-hhccCccccccc--cCCCCHHH-HHHHHhcCCcceecCCCCceeecCCCCCccc--cccccCCCCcccccccc
Q 018571          201 VNTD-IGHGAQSLRWFV--WPNIDKDS-IEMMSTECPRIIVNPKPSPFGFRGFEVPREA--FPDITLDDPFVNDIDPS  272 (354)
Q Consensus       201 d~~~-i~~~~~~L~~L~--C~~ITD~~-l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~a--l~~v~~~~~~v~~~~~~  272 (354)
                      +.+. +...+++|+.|.  -.+|.+-. +..+ ..||+|++      +++.|.|++...  -..|....|.++.+|..
T Consensus        78 ~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L-~~l~~L~~------L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   78 SISEGLDKNLPNLQELYLSNNKISDLNELEPL-SSLPKLRV------LSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             S-CHHHHHH-TT--EEE-TTS---SCCCCGGG-GG-TT--E------EE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ccccchHHhCCcCCEEECcCCcCCChHHhHHH-HcCCCcce------eeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            7542 345688999987  33444422 3334 57999999      999999965432  23444556666666665

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.76  E-value=0.0011  Score=41.06  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=21.3

Q ss_pred             CCccEEEeecC-CCCHHHHHHHHH
Q 018571          114 SSWEILDISGS-DVSDFGLVKVAQ  136 (354)
Q Consensus       114 ~~L~~LdLs~C-~ITD~gL~~la~  136 (354)
                      ++|++|+|++| +|||.|+..|++
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHHhc
Confidence            68999999999 999999999985

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=96.64  E-value=0.002  Score=71.44  Aligned_cols=15  Identities=0%  Similarity=0.014  Sum_probs=8.1

Q ss_pred             hcCCcceecCCCCceeecCCC
Q 018571          230 TECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       230 ~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      ..+++|+.      +++.+|.
T Consensus       305 ~~l~~L~~------L~l~~n~  319 (968)
T PLN00113        305 IQLQNLEI------LHLFSNN  319 (968)
T ss_pred             cCCCCCcE------EECCCCc
Confidence            34555555      5555555

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=96.53  E-value=0.0035  Score=69.43  Aligned_cols=127  Identities=14%  Similarity=0.035  Sum_probs=55.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++|.++...-..+.. +++|++|+|   .++...-..+ .++++|++|++++|.- ++..-..+. ++++|+
T Consensus       212 ~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l-~~~~p~~l~-~l~~L~  287 (968)
T PLN00113        212 KSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKL-SGPIPPSIF-SLQKLI  287 (968)
T ss_pred             CCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCee-eccCchhHh-hccCcC
Confidence            45555555555444322222332 556666665   3332221222 2455666666665532 111111122 345666


Q ss_pred             EeeCCCccccchh-hhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNT-DIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~-~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +|+++++...... ..-..+++|+.|+  ...++...- .....+|+|+.      +++.+|.+
T Consensus       288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~------L~L~~n~l  344 (968)
T PLN00113        288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQV------LQLWSNKF  344 (968)
T ss_pred             EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCE------EECcCCCC
Confidence            6666555433211 0113345555554  222322211 12235566666      66666654

>PLN03210 Resistant to P

Probab=96.43  E-value=0.0027  Score=72.30  Aligned_cols=119  Identities=13%  Similarity=0.124  Sum_probs=53.4

Q ss_pred             CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCC
Q 018571          114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK  188 (354)
Q Consensus       114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~  188 (354)
                      ++|+.|+|++| .+..-. ..+. .+++|+.|+|    .++.  +-.-. ++++|++|++++|..+..     +....++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP-~si~-~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~-----~p~~~~n  847 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELP-SSIQ-NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRT-----FPDISTN  847 (1153)
T ss_pred             ccchheeCCCCCCccccC-hhhh-CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcccc-----ccccccc
Confidence            45666666666 322211 1122 3666666666    1111  00000 356666666666655432     1122345


Q ss_pred             CcEeeCCCccccchhhhhccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          189 LNDVEGDSWEELVNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       189 L~~L~ls~~~~td~~~i~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      |+.|+++++.+...-..-..+++|+.|+   |.+++.-  ..-...++.|+.      +++.+|+
T Consensus       848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l--~~~~~~L~~L~~------L~l~~C~  904 (1153)
T PLN03210        848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV--SLNISKLKHLET------VDFSDCG  904 (1153)
T ss_pred             cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc--CcccccccCCCe------eecCCCc
Confidence            5555555544332111112345555554   5555531  112234455555      6666665

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.0013  Score=66.83  Aligned_cols=100  Identities=16%  Similarity=0.096  Sum_probs=76.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eec-HHHHHHHHhcCCCCCEEEecCCCCC--cHHHHHHHHhcCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RIT-AAGVSEFLLHCHSLETLRCGGSPRS--NHAARRCLGILKP  187 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~IT-d~gl~~La~~Cp~Le~L~L~gC~~I--tD~sL~~La~~cp  187 (354)
                      ..|+.+.|.+|.|.+.|....+..|++++.|||   -++ =..|..|++..|+|+.|+|+.-...  +++-   .-...+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~  197 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN---TTLLLS  197 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc---chhhhh
Confidence            678999999999999999888888999999999   333 3678999999999999999864211  1110   111468


Q ss_pred             CCcEeeCCCccccch--hhhhccCccccccc
Q 018571          188 KLNDVEGDSWEELVN--TDIGHGAQSLRWFV  216 (354)
Q Consensus       188 ~L~~L~ls~~~~td~--~~i~~~~~~L~~L~  216 (354)
                      +|+.|.+++|..+-.  +-+..++++|+.|.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~  228 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLY  228 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhh
Confidence            899999998877633  33467788888876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=95.92  E-value=0.0038  Score=65.65  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=70.6

Q ss_pred             CCCCcEEEE------eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCc----cccchhhhhc
Q 018571          138 CKSLKAVDI------RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSW----EELVNTDIGH  207 (354)
Q Consensus       138 C~~L~~LdL------~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~----~~td~~~i~~  207 (354)
                      |++|+.|||      ++....+..|    ..|++|+|+.- +|+.-.- ..-....+|+.||++..    .+-|.++...
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~N-si~~l~e-~af~~lssL~~LdLr~N~ls~~IEDaa~~f~  389 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHN-SIDHLAE-GAFVGLSSLHKLDLRSNELSWCIEDAAVAFN  389 (873)
T ss_pred             cccceeEeccccccccCChhHHHHH----HHhhhhccccc-chHHHHh-hHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence            777777777      3334444433    34777777642 2221111 11123678888888753    3445555557


Q ss_pred             cCccccccc-----cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC---CCccccccccCCCCccc
Q 018571          208 GAQSLRWFV-----WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE---VPREAFPDITLDDPFVN  267 (354)
Q Consensus       208 ~~~~L~~L~-----C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~---~s~~al~~v~~~~~~v~  267 (354)
                      |+++|+.|.     -..|+..+..    +.+.|+.      ||+.+-+   +-.+|+..+.+....++
T Consensus       390 gl~~LrkL~l~gNqlk~I~krAfs----gl~~LE~------LdL~~NaiaSIq~nAFe~m~Lk~Lv~n  447 (873)
T KOG4194|consen  390 GLPSLRKLRLTGNQLKSIPKRAFS----GLEALEH------LDLGDNAIASIQPNAFEPMELKELVMN  447 (873)
T ss_pred             cchhhhheeecCceeeecchhhhc----cCcccce------ecCCCCcceeecccccccchhhhhhhc
Confidence            788888886     4556666654    6688999      9999988   66788877766544433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.59  E-value=0.012  Score=57.69  Aligned_cols=129  Identities=12%  Similarity=0.081  Sum_probs=58.3

Q ss_pred             CCccEEEeecCCCCHH-HHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDF-GLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~-gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L  189 (354)
                      +.++.|||.++.|+|= -+..|....|.|+.|+|   .+. ..|..+.--..+|++|-|.|. .+.=..+.......|++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccceEEEEEcCC-CCChhhhhhhhhcchhh
Confidence            4555555555555542 34445555555555555   111 112222112345555555542 23333344444555666


Q ss_pred             cEeeCCCc---cc-cchhhhhccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          190 NDVEGDSW---EE-LVNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       190 ~~L~ls~~---~~-td~~~i~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      +.|+++..   .. .|+--+....+.++.|+   |...-=..+..+.+..|++..      +-+-.||
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s------v~v~e~P  210 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS------VFVCEGP  210 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh------eeeecCc
Confidence            65544332   11 11111122222333333   443333445566777777776      5566666

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.57  E-value=0.01  Score=35.75  Aligned_cols=24  Identities=21%  Similarity=0.180  Sum_probs=17.2

Q ss_pred             CCCCCEEEecCCCCCcHHHHHHHHh
Q 018571          160 CHSLETLRCGGSPRSNHAARRCLGI  184 (354)
Q Consensus       160 Cp~Le~L~L~gC~~ItD~sL~~La~  184 (354)
                      |++|++|+|++|. ++|.++.+|+.
T Consensus         1 ~~~L~~L~l~~n~-i~~~g~~~l~~   24 (24)
T PF13516_consen    1 NPNLETLDLSNNQ-ITDEGASALAN   24 (24)
T ss_dssp             -TT-SEEE-TSSB-EHHHHHHHHHH
T ss_pred             CCCCCEEEccCCc-CCHHHHHHhCC
Confidence            6788888888876 88888888763

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.47  E-value=0.0048  Score=64.04  Aligned_cols=162  Identities=14%  Similarity=0.159  Sum_probs=109.0

Q ss_pred             CCCHHHHHHhhc-----CCccEEEeecCCCCHHHHHHHHHhCCC----CcEEEE---eecHHHHHHHH---hcCCCCCEE
Q 018571          102 LLADDVIMSLAD-----SSWEILDISGSDVSDFGLVKVAQMCKS----LKAVDI---RITAAGVSEFL---LHCHSLETL  166 (354)
Q Consensus       102 ~ltD~~L~~la~-----~~L~~LdLs~C~ITD~gL~~la~~C~~----L~~LdL---~ITd~gl~~La---~~Cp~Le~L  166 (354)
                      .+.|.....++.     ++|+.|+++++.++|.|...+....+.    |+.|++   .+|+.|-..++   ..+..|+.|
T Consensus        98 ~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l  177 (478)
T KOG4308|consen   98 RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTEL  177 (478)
T ss_pred             ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHH
Confidence            356666666654     889999999999999999999887654    455555   77877755554   347888888


Q ss_pred             EecCCCCCcHHHHHHHHhcC-------CCCcEeeCCCccccchhh------hhccCccccccc--cCCCCHHHHHHHHhc
Q 018571          167 RCGGSPRSNHAARRCLGILK-------PKLNDVEGDSWEELVNTD------IGHGAQSLRWFV--WPNIDKDSIEMMSTE  231 (354)
Q Consensus       167 ~L~gC~~ItD~sL~~La~~c-------p~L~~L~ls~~~~td~~~------i~~~~~~L~~L~--C~~ITD~~l~~L~~~  231 (354)
                      ++.-|..+ +.+...+....       ..+++|.+.++.+++...      +...-..+..++  |..+.|.++..+...
T Consensus       178 ~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~  256 (478)
T KOG4308|consen  178 DLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPC  256 (478)
T ss_pred             HHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHH
Confidence            99888766 44554444333       357778888888776543      233333355566  888899888888765


Q ss_pred             CCcc----eecCCCCceeecCCCCCccc---cccccCCCCcccccc
Q 018571          232 CPRI----IVNPKPSPFGFRGFEVPREA---FPDITLDDPFVNDID  270 (354)
Q Consensus       232 Cp~L----~~~p~~~~L~l~gC~~s~~a---l~~v~~~~~~v~~~~  270 (354)
                      .+..    +.      +++.+|.++..+   ++.+...++.++.+.
T Consensus       257 l~~~~~~l~~------l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~  296 (478)
T KOG4308|consen  257 LSVLSETLRV------LDLSRNSITEKGVRDLAEVLVSCRQLEELS  296 (478)
T ss_pred             hcccchhhhh------hhhhcCCccccchHHHHHHHhhhHHHHHhh
Confidence            5544    66      888888865444   445555555554433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.39  E-value=0.009  Score=35.97  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=18.6

Q ss_pred             CCccEEEeecCCCCHHHHHHHHH
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQ  136 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~  136 (354)
                      ++|++|+|++|+|+|+|+..|++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l~~   24 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASALAN   24 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHhCC
Confidence            57899999999999999998874

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.33  E-value=0.0022  Score=47.11  Aligned_cols=54  Identities=17%  Similarity=0.251  Sum_probs=34.3

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE------eecHHHHHHHHhcCCCCCEEEecCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI------RITAAGVSEFLLHCHSLETLRCGGSP  172 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL------~ITd~gl~~La~~Cp~Le~L~L~gC~  172 (354)
                      |+|+.|++++|+++.-.-..+. .+++|++|+|      .|....    ..++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFS-NLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTT-TGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHc-CCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCc
Confidence            5678888888865543332333 4788888888      333322    2467888888888763

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.60  E-value=0.013  Score=63.11  Aligned_cols=84  Identities=15%  Similarity=0.198  Sum_probs=56.7

Q ss_pred             CHHHHHHhhcCCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE------eecHHHHHHHHhcCCCCCEEEecCCCCCcHH
Q 018571          104 ADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI------RITAAGVSEFLLHCHSLETLRCGGSPRSNHA  177 (354)
Q Consensus       104 tD~~L~~la~~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL------~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~  177 (354)
                      -|+.+..+  +.+++|||+.+++++..  .|. +|++|++|||      .|..-+.    .+|. |+.|++.+-..-   
T Consensus       179 mD~SLqll--~ale~LnLshNk~~~v~--~Lr-~l~~LkhLDlsyN~L~~vp~l~~----~gc~-L~~L~lrnN~l~---  245 (1096)
T KOG1859|consen  179 MDESLQLL--PALESLNLSHNKFTKVD--NLR-RLPKLKHLDLSYNCLRHVPQLSM----VGCK-LQLLNLRNNALT---  245 (1096)
T ss_pred             HHHHHHHH--HHhhhhccchhhhhhhH--HHH-hcccccccccccchhccccccch----hhhh-heeeeecccHHH---
Confidence            35555544  78999999999999877  444 5999999999      3333222    2466 999999875332   


Q ss_pred             HHHHHHhcCCCCcEeeCCCccccc
Q 018571          178 ARRCLGILKPKLNDVEGDSWEELV  201 (354)
Q Consensus       178 sL~~La~~cp~L~~L~ls~~~~td  201 (354)
                      .+..|.. +..|+.||++..-+.+
T Consensus       246 tL~gie~-LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  246 TLRGIEN-LKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             hhhhHHh-hhhhhccchhHhhhhc
Confidence            3444443 6788888886554444

>PLN03210 Resistant to P

Probab=94.28  E-value=0.059  Score=61.58  Aligned_cols=96  Identities=18%  Similarity=0.240  Sum_probs=48.0

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L  189 (354)
                      .+|+.|+|.+|++..-  -.-...+++|+.|+|    .++.  +..+. .+++|++|+|++|..+..-- ..+ .++++|
T Consensus       611 ~~L~~L~L~~s~l~~L--~~~~~~l~~Lk~L~Ls~~~~l~~--ip~ls-~l~~Le~L~L~~c~~L~~lp-~si-~~L~~L  683 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKL--WDGVHSLTGLRNIDLRGSKNLKE--IPDLS-MATNLETLKLSDCSSLVELP-SSI-QYLNKL  683 (1153)
T ss_pred             cCCcEEECcCcccccc--ccccccCCCCCEEECCCCCCcCc--CCccc-cCCcccEEEecCCCCccccc-hhh-hccCCC
Confidence            3566666666644321  000134677777777    1111  11122 46777777777776554311 112 346777


Q ss_pred             cEeeCCCccccchhhhhccCccccccc
Q 018571          190 NDVEGDSWEELVNTDIGHGAQSLRWFV  216 (354)
Q Consensus       190 ~~L~ls~~~~td~~~i~~~~~~L~~L~  216 (354)
                      +.|++++|.....--.+..+++|+.|+
T Consensus       684 ~~L~L~~c~~L~~Lp~~i~l~sL~~L~  710 (1153)
T PLN03210        684 EDLDMSRCENLEILPTGINLKSLYRLN  710 (1153)
T ss_pred             CEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence            777777664322111112445555554

syringae 6; Provisional

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.07  E-value=0.025  Score=55.01  Aligned_cols=111  Identities=11%  Similarity=0.089  Sum_probs=67.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEEeecH-HHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEe
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITA-AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDV  192 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL~ITd-~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L  192 (354)
                      .+.+.|++.||+++|..+   ...+|.|+.|.|.++. .++.-+. +|.+|++|.|.. ..|.|-.-..--.++|.|+.|
T Consensus        19 ~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~pl~-rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLAPLQ-RCTRLKELYLRK-NCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccchhHH-HHHHHHHHHHHh-cccccHHHHHHHhcCchhhhH
Confidence            456778888888888654   4557888888884443 2344444 688888888864 234432222233457888877


Q ss_pred             eCCC--ccccch----hhhhccCccccccccCCCCHHHHHHHH
Q 018571          193 EGDS--WEELVN----TDIGHGAQSLRWFVWPNIDKDSIEMMS  229 (354)
Q Consensus       193 ~ls~--~~~td~----~~i~~~~~~L~~L~C~~ITD~~l~~L~  229 (354)
                      -+..  |.....    ..+-..+++|+.|+-..||.+-++.-.
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~AL  136 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEAL  136 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHH
Confidence            4432  221111    112456778888887777777766544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=93.59  E-value=0.021  Score=62.88  Aligned_cols=121  Identities=15%  Similarity=0.194  Sum_probs=62.9

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---e---ecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---R---ITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP  187 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~---ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp  187 (354)
                      +.|+.|.+.++.+||..+-.+.. .++|+.|+|   +   +.+..+.    ..+.|++|+|+|-. ++.-. ..++ +|+
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGNk-L~~Lp-~tva-~~~  430 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGNK-LTTLP-DTVA-NLG  430 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhcc-ccceeeeeecccccccCCHHHHh----chHHhHHHhcccch-hhhhh-HHHH-hhh
Confidence            34666677777777777666654 677777777   2   3344433    34557777777643 22111 1222 255


Q ss_pred             CCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          188 KLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       188 ~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      .|++|-..+..+...-. -..++.|+.++  |.+++.-.+...... |+|++      ||+.|-.
T Consensus       431 ~L~tL~ahsN~l~~fPe-~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~Lky------LdlSGN~  487 (1081)
T KOG0618|consen  431 RLHTLRAHSNQLLSFPE-LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKY------LDLSGNT  487 (1081)
T ss_pred             hhHHHhhcCCceeechh-hhhcCcceEEecccchhhhhhhhhhCCC-cccce------eeccCCc
Confidence            55555333222221111 12334555555  666665555544433 66666      6666655

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=93.12  E-value=0.11  Score=32.61  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMC  138 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C  138 (354)
                      ++|++|||++|.|+|+|...+++..
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~L   26 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEAL   26 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHHh
Confidence            5789999999999999999988743

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=92.47  E-value=0.17  Score=55.93  Aligned_cols=45  Identities=18%  Similarity=0.271  Sum_probs=34.7

Q ss_pred             hcCCCCCHHHHHHhhc-CCccEEEeecCC---CCHHHHHHHHHhCCCCcEEEE
Q 018571           98 RRRKLLADDVIMSLAD-SSWEILDISGSD---VSDFGLVKVAQMCKSLKAVDI  146 (354)
Q Consensus        98 ~~~~~ltD~~L~~la~-~~L~~LdLs~C~---ITD~gL~~la~~C~~L~~LdL  146 (354)
                      -....+||..+..|.. ++|+.|+|+++.   +.+..+..+    +.|++|+|
T Consensus       366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl----e~LeeL~L  414 (1081)
T KOG0618|consen  366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL----EELEELNL  414 (1081)
T ss_pred             HhcCcccccchhhhccccceeeeeecccccccCCHHHHhch----HHhHHHhc
Confidence            3456799999999887 999999999983   566665544    45778887

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.10  E-value=0.066  Score=51.18  Aligned_cols=79  Identities=19%  Similarity=0.277  Sum_probs=57.7

Q ss_pred             CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE---eecH-HHHHHHHhcCCCCCEEEecCCC--CCcHHHHHHHHhcC
Q 018571          114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI---RITA-AGVSEFLLHCHSLETLRCGGSP--RSNHAARRCLGILK  186 (354)
Q Consensus       114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL---~ITd-~gl~~La~~Cp~Le~L~L~gC~--~ItD~sL~~La~~c  186 (354)
                      |+|+.|.++++ .--..||..++..||+|++|++   +|.+ ..+..+. ..++|.+|+++.|.  +.+|. -..+..-.
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dy-re~vf~ll  142 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDY-REKVFLLL  142 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh-hhcchhhhhcccCCccccccH-HHHHHHHh
Confidence            78899999988 4445688888988999999999   5553 4455554 46779999999985  44443 44566667


Q ss_pred             CCCcEeeC
Q 018571          187 PKLNDVEG  194 (354)
Q Consensus       187 p~L~~L~l  194 (354)
                      |+|+.|+-
T Consensus       143 ~~L~~LD~  150 (260)
T KOG2739|consen  143 PSLKYLDG  150 (260)
T ss_pred             hhhccccc
Confidence            88888753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=91.18  E-value=0.23  Score=34.54  Aligned_cols=38  Identities=13%  Similarity=-0.046  Sum_probs=22.1

Q ss_pred             CCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccc
Q 018571          161 HSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELV  201 (354)
Q Consensus       161 p~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td  201 (354)
                      ++|++|+++++ ++++  +...-.+|++|+.|++++..++|
T Consensus         1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence            46777777765 4444  23312357777777777766654

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=91.04  E-value=0.13  Score=35.73  Aligned_cols=13  Identities=31%  Similarity=0.363  Sum_probs=7.8

Q ss_pred             cCCCCCEEEecCC
Q 018571          159 HCHSLETLRCGGS  171 (354)
Q Consensus       159 ~Cp~Le~L~L~gC  171 (354)
                      +|++|++|+++++
T Consensus        22 ~l~~L~~L~l~~N   34 (44)
T PF12799_consen   22 NLPNLETLNLSNN   34 (44)
T ss_dssp             TCTTSSEEEETSS
T ss_pred             CCCCCCEEEecCC
Confidence            5666666666655

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.00  E-value=0.13  Score=50.22  Aligned_cols=13  Identities=8%  Similarity=-0.013  Sum_probs=6.7

Q ss_pred             HHHHHhcCCccee
Q 018571          225 IEMMSTECPRIIV  237 (354)
Q Consensus       225 l~~L~~~Cp~L~~  237 (354)
                      -..+.+-.|+|+.
T Consensus       109 R~~VLR~LPnLkK  121 (388)
T KOG2123|consen  109 RRKVLRVLPNLKK  121 (388)
T ss_pred             HHHHHHHcccchh
Confidence            3344455555555

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=89.41  E-value=0.1  Score=55.38  Aligned_cols=83  Identities=13%  Similarity=0.159  Sum_probs=48.3

Q ss_pred             cCCCCcEeeCCCcccc-chhhhhccCccccccc-----cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC--------
Q 018571          185 LKPKLNDVEGDSWEEL-VNTDIGHGAQSLRWFV-----WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE--------  250 (354)
Q Consensus       185 ~cp~L~~L~ls~~~~t-d~~~i~~~~~~L~~L~-----C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~--------  250 (354)
                      ++|+|+.|++....+- .+|.-..|+++|+.|.     -..++|-+.-    .|.+++.      +++..-.        
T Consensus       219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy----~l~kme~------l~L~~N~l~~vn~g~  288 (873)
T KOG4194|consen  219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY----GLEKMEH------LNLETNRLQAVNEGW  288 (873)
T ss_pred             hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee----eecccce------eecccchhhhhhccc
Confidence            4778888777554432 2344456666666654     4455554332    4556666      6664444        


Q ss_pred             -CCccccccccCCCCccccccccccccc
Q 018571          251 -VPREAFPDITLDDPFVNDIDPSAWAVP  277 (354)
Q Consensus       251 -~s~~al~~v~~~~~~v~~~~~~~W~v~  277 (354)
                       ..-..|+.+-+..-.|..+-+.+|...
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhc
Confidence             122345566666666777888888764

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.03  E-value=0.16  Score=52.94  Aligned_cols=58  Identities=7%  Similarity=-0.119  Sum_probs=28.9

Q ss_pred             CCCcHHHHHHHHhcCCCC----cEeeCCCccccchhhh-----hccCccccccc--cCCCCHHHHHHHH
Q 018571          172 PRSNHAARRCLGILKPKL----NDVEGDSWEELVNTDI-----GHGAQSLRWFV--WPNIDKDSIEMMS  229 (354)
Q Consensus       172 ~~ItD~sL~~La~~cp~L----~~L~ls~~~~td~~~i-----~~~~~~L~~L~--C~~ITD~~l~~L~  229 (354)
                      .++.|.+++.+....+.+    +++++..+.+++.|..     -..|+.++.+.  +..++|.++..+.
T Consensus       243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~  311 (478)
T KOG4308|consen  243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLL  311 (478)
T ss_pred             cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHH
Confidence            344555555544433333    4555555555554431     23344555554  5666666655443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=88.75  E-value=0.14  Score=48.96  Aligned_cols=95  Identities=16%  Similarity=0.213  Sum_probs=57.2

Q ss_pred             CccEEEeecCCCCHHHHHHHHHh--CCCCcEEEE--e--ecHHHHHHHHhcCCCCCEEEecCCCCCcH-HHHHHHHhcCC
Q 018571          115 SWEILDISGSDVSDFGLVKVAQM--CKSLKAVDI--R--ITAAGVSEFLLHCHSLETLRCGGSPRSNH-AARRCLGILKP  187 (354)
Q Consensus       115 ~L~~LdLs~C~ITD~gL~~la~~--C~~L~~LdL--~--ITd~gl~~La~~Cp~Le~L~L~gC~~ItD-~sL~~La~~cp  187 (354)
                      .|+.|++.++     |+..++..  .|+|+.|.+  +  --..|+..+++.||+|++|++++- +|.| ..+..+.. .+
T Consensus        44 ~le~ls~~n~-----gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~-l~  116 (260)
T KOG2739|consen   44 ELELLSVINV-----GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKE-LE  116 (260)
T ss_pred             chhhhhhhcc-----ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhh-hc
Confidence            4455555555     33333332  578888888  2  345688899999999999999974 4443 33444443 56


Q ss_pred             CCcEeeCCCccccc---hhh-hhccCccccccc
Q 018571          188 KLNDVEGDSWEELV---NTD-IGHGAQSLRWFV  216 (354)
Q Consensus       188 ~L~~L~ls~~~~td---~~~-i~~~~~~L~~L~  216 (354)
                      +|..|++..|.++.   ... ++.-.++|++|+
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            77777776654432   211 234445555555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=88.52  E-value=0.061  Score=39.25  Aligned_cols=37  Identities=14%  Similarity=0.072  Sum_probs=17.1

Q ss_pred             CCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccc
Q 018571          161 HSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEE  199 (354)
Q Consensus       161 p~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~  199 (354)
                      |+|++|++++| .++.-.-. .-.++++|++|++++..+
T Consensus         1 p~L~~L~l~~n-~l~~i~~~-~f~~l~~L~~L~l~~N~l   37 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPD-SFSNLPNLETLDLSNNNL   37 (61)
T ss_dssp             TTESEEEETSS-TESEECTT-TTTTGTTESEEEETSSSE
T ss_pred             CcCcEEECCCC-CCCccCHH-HHcCCCCCCEeEccCCcc
Confidence            45666666665 22211111 112356666666655443

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=86.62  E-value=0.29  Score=53.93  Aligned_cols=14  Identities=21%  Similarity=0.558  Sum_probs=9.9

Q ss_pred             CCccEEEeecCCCC
Q 018571          114 SSWEILDISGSDVS  127 (354)
Q Consensus       114 ~~L~~LdLs~C~IT  127 (354)
                      ++|++|+|++|+++
T Consensus       242 ~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        242 PELRTLEVSGNQLT  255 (788)
T ss_pred             CCCcEEEecCCccC
Confidence            67777777777555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=86.04  E-value=0.26  Score=54.22  Aligned_cols=22  Identities=5%  Similarity=0.101  Sum_probs=16.1

Q ss_pred             hcCCcceecCCCCceeecCCCCCccccc
Q 018571          230 TECPRIIVNPKPSPFGFRGFEVPREAFP  257 (354)
Q Consensus       230 ~~Cp~L~~~p~~~~L~l~gC~~s~~al~  257 (354)
                      ..++.|..      +++.|.+++...+.
T Consensus       442 ~~L~~L~~------LdLs~N~Ls~~~~~  463 (788)
T PRK15387        442 IHLSSETT------VNLEGNPLSERTLQ  463 (788)
T ss_pred             hhccCCCe------EECCCCCCCchHHH
Confidence            36778888      99999997655443

>PLN03150 hypothetical protein; Provisional

Probab=85.81  E-value=0.68  Score=49.65  Aligned_cols=79  Identities=16%  Similarity=0.182  Sum_probs=41.6

Q ss_pred             ccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEe
Q 018571          116 WEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDV  192 (354)
Q Consensus       116 L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L  192 (354)
                      ++.|+|+++.++..--..+.. +++|+.|+|   .++. .+-.-..++++|++|+|+++.- +...-..++ ++++|+.|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~l-sg~iP~~l~-~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSF-NGSIPESLG-QLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCC-CCCCchHHh-cCCCCCEE
Confidence            566777776543222223333 677777777   3321 1221224577777777776632 211111233 46777777


Q ss_pred             eCCCcc
Q 018571          193 EGDSWE  198 (354)
Q Consensus       193 ~ls~~~  198 (354)
                      ++++..
T Consensus       496 ~Ls~N~  501 (623)
T PLN03150        496 NLNGNS  501 (623)
T ss_pred             ECcCCc
Confidence            776554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=85.63  E-value=9.8  Score=37.44  Aligned_cols=167  Identities=16%  Similarity=0.144  Sum_probs=95.6

Q ss_pred             CCCCHHHHHHhhc-----CCccEEEeecC---CCCHHHH---H---HHHHhCCCCcEEEE---ee---cHHHHHHHHhcC
Q 018571          101 KLLADDVIMSLAD-----SSWEILDISGS---DVSDFGL---V---KVAQMCKSLKAVDI---RI---TAAGVSEFLLHC  160 (354)
Q Consensus       101 ~~ltD~~L~~la~-----~~L~~LdLs~C---~ITD~gL---~---~la~~C~~L~~LdL---~I---Td~gl~~La~~C  160 (354)
                      ..++.++...+..     .+|+..++++-   .+-|+-.   .   ...-.||+|+.++|   .+   +..-+..+..+-
T Consensus        40 NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~  119 (388)
T COG5238          40 NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSS  119 (388)
T ss_pred             CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcC
Confidence            4566666666554     67788888774   3444322   2   12234899998888   22   233344455567


Q ss_pred             CCCCEEEecCCCCCc------HHHHHHHH-----hcCCCCcEeeCCCccccchh--hhhccC---ccccccc--cCCCCH
Q 018571          161 HSLETLRCGGSPRSN------HAARRCLG-----ILKPKLNDVEGDSWEELVNT--DIGHGA---QSLRWFV--WPNIDK  222 (354)
Q Consensus       161 p~Le~L~L~gC~~It------D~sL~~La-----~~cp~L~~L~ls~~~~td~~--~i~~~~---~~L~~L~--C~~ITD  222 (354)
                      ..|++|.+++|..-.      ..++..++     .+-|.|+++..+....-...  ..+.+.   ..|+.+-  -..|-.
T Consensus       120 t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp  199 (388)
T COG5238         120 TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRP  199 (388)
T ss_pred             CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc
Confidence            789999998884211      12334444     34688888765432221111  111111   3555554  556888


Q ss_pred             HHHHHHH----hcCCcceecCCCCceeecCCCCCc-------cccccccC-CCCccccccccc
Q 018571          223 DSIEMMS----TECPRIIVNPKPSPFGFRGFEVPR-------EAFPDITL-DDPFVNDIDPSA  273 (354)
Q Consensus       223 ~~l~~L~----~~Cp~L~~~p~~~~L~l~gC~~s~-------~al~~v~~-~~~~v~~~~~~~  273 (354)
                      +|+..++    .+|.+|.+      |++..-..+-       .++++-+. .+..+.|+-.++
T Consensus       200 egv~~L~~~gl~y~~~Lev------LDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         200 EGVTMLAFLGLFYSHSLEV------LDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             chhHHHHHHHHHHhCccee------eeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            8887774    78999999      9988766433       33444444 555555554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=83.38  E-value=2.1  Score=43.92  Aligned_cols=66  Identities=18%  Similarity=0.208  Sum_probs=38.5

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L  189 (354)
                      .++++|++++|.++.--     ..-++|++|++    .++.  +..  .-.++|++|++++|..+.     .+   -+.|
T Consensus        52 ~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLts--LP~--~LP~nLe~L~Ls~Cs~L~-----sL---P~sL  114 (426)
T PRK15386         52 RASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTT--LPG--SIPEGLEKLTVCHCPEIS-----GL---PESV  114 (426)
T ss_pred             cCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCccc--CCc--hhhhhhhheEccCccccc-----cc---cccc
Confidence            77888888888544321     22346888887    2111  110  113578889998887654     12   3456


Q ss_pred             cEeeCCC
Q 018571          190 NDVEGDS  196 (354)
Q Consensus       190 ~~L~ls~  196 (354)
                      +.|++.+
T Consensus       115 e~L~L~~  121 (426)
T PRK15386        115 RSLEIKG  121 (426)
T ss_pred             ceEEeCC
Confidence            7776654

>PLN03150 hypothetical protein; Provisional

Probab=83.12  E-value=1.1  Score=48.02  Aligned_cols=83  Identities=13%  Similarity=0.125  Sum_probs=50.9

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.. ++|+.|+|++|.++..-=..+. .+++|+.|+|   .++...=..+. ++++|++|+|+++.. +...=..++...
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls~N~l-~g~iP~~l~~~~  514 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGNSL-SGRVPAALGGRL  514 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECcCCcc-cccCChHHhhcc
Confidence            444 8999999999976543222344 4999999999   44432222343 799999999998752 211111233333


Q ss_pred             CCCcEeeCCC
Q 018571          187 PKLNDVEGDS  196 (354)
Q Consensus       187 p~L~~L~ls~  196 (354)
                      .++..+++.+
T Consensus       515 ~~~~~l~~~~  524 (623)
T PLN03150        515 LHRASFNFTD  524 (623)
T ss_pred             ccCceEEecC
Confidence            4555666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=82.97  E-value=6  Score=38.90  Aligned_cols=121  Identities=10%  Similarity=0.061  Sum_probs=67.0

Q ss_pred             CCccEEEeecCCCCHHH-------HHHHHH-----hCCCCcEEEE---ee---cHHHHHHHHhcCCCCCEEEecCCCCCc
Q 018571          114 SSWEILDISGSDVSDFG-------LVKVAQ-----MCKSLKAVDI---RI---TAAGVSEFLLHCHSLETLRCGGSPRSN  175 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~g-------L~~la~-----~C~~L~~LdL---~I---Td~gl~~La~~Cp~Le~L~L~gC~~It  175 (354)
                      ..|.+|.|++|++...+       +..++.     .-|.|+.+..   ++   +-.-..+..+.-.+|+++.+.. ..|.
T Consensus       120 t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIr  198 (388)
T COG5238         120 TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIR  198 (388)
T ss_pred             CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcC
Confidence            67777777777544332       222222     1466777666   22   2222233333335777777764 4566


Q ss_pred             HHHHHHHH----hcCCCCcEeeCCCccccchhhh--h---ccCccccccc---cCCCCHHHHHHHHhcCCcce
Q 018571          176 HAARRCLG----ILKPKLNDVEGDSWEELVNTDI--G---HGAQSLRWFV---WPNIDKDSIEMMSTECPRII  236 (354)
Q Consensus       176 D~sL~~La----~~cp~L~~L~ls~~~~td~~~i--~---~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~  236 (354)
                      ..|+..++    .+|+.|+.||+.....+-.|..  +   ..-+.|++|.   | -++..|+..+.+....+.
T Consensus       199 pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~  270 (388)
T COG5238         199 PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKF  270 (388)
T ss_pred             cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch-hhccccHHHHHHHhhhhc
Confidence            66666554    4688888888765555544432  1   1123566665   5 467777777766555444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=80.94  E-value=0.94  Score=49.47  Aligned_cols=117  Identities=13%  Similarity=0.029  Sum_probs=66.0

Q ss_pred             CccEEEeecC--CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCC--CCcHHHHHHHHhcCC
Q 018571          115 SWEILDISGS--DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSP--RSNHAARRCLGILKP  187 (354)
Q Consensus       115 ~L~~LdLs~C--~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~--~ItD~sL~~La~~cp  187 (354)
                      .|...+.+.+  ..-|.+|+.+    +.|++|||   ++++-.  .| +.|++|++|||+.-.  .+..-  ..  ..|.
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll----~ale~LnLshNk~~~v~--~L-r~l~~LkhLDlsyN~L~~vp~l--~~--~gc~  233 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLL----PALESLNLSHNKFTKVD--NL-RRLPKLKHLDLSYNCLRHVPQL--SM--VGCK  233 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHH----HHhhhhccchhhhhhhH--HH-Hhcccccccccccchhcccccc--ch--hhhh
Confidence            3455666666  3447777765    45899999   777644  34 579999999999632  11111  11  1254


Q ss_pred             CCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          188 KLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       188 ~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                       |+.|++.+..++.---| ..+++|+.|+  ..-|.+-.-.........|+.      |.+.|-|
T Consensus       234 -L~~L~lrnN~l~tL~gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~------L~LeGNP  290 (1096)
T KOG1859|consen  234 -LQLLNLRNNALTTLRGI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV------LWLEGNP  290 (1096)
T ss_pred             -heeeeecccHHHhhhhH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHH------HhhcCCc
Confidence             88888877655442211 3445566555  222222222222333345666      7777766

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=80.73  E-value=1  Score=42.06  Aligned_cols=61  Identities=18%  Similarity=0.051  Sum_probs=34.1

Q ss_pred             CCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCcccc
Q 018571          138 CKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEEL  200 (354)
Q Consensus       138 C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~t  200 (354)
                      .++|..|.|   +||+-+ --|....|+|.+|.|.+-+-..-..+.-++. ||+|+.|-+-+..+.
T Consensus        63 l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPKLEYLTLLGNPVE  126 (233)
T ss_pred             ccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhcc-CCccceeeecCCchh
Confidence            567777777   565422 1233445677777777654333344455554 777777755444333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=80.71  E-value=0.87  Score=45.10  Aligned_cols=120  Identities=14%  Similarity=0.146  Sum_probs=69.5

Q ss_pred             CCccEEEeecCCCC--HHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCC
Q 018571          114 SSWEILDISGSDVS--DFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK  188 (354)
Q Consensus       114 ~~L~~LdLs~C~IT--D~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~  188 (354)
                      ..|++||||++.|+  |+++..    .|.++.|++   .|+..+  .++ +.++|++|||++-....   +......+-+
T Consensus       284 q~LtelDLS~N~I~~iDESvKL----~Pkir~L~lS~N~i~~v~--nLa-~L~~L~~LDLS~N~Ls~---~~Gwh~KLGN  353 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKL----APKLRRLILSQNRIRTVQ--NLA-ELPQLQLLDLSGNLLAE---CVGWHLKLGN  353 (490)
T ss_pred             hhhhhccccccchhhhhhhhhh----ccceeEEeccccceeeeh--hhh-hcccceEeecccchhHh---hhhhHhhhcC
Confidence            56888999998555  444433    588999999   454322  355 68999999999754332   3333445567


Q ss_pred             CcEeeCCCccccchhhhhccCccccccc--cCCCCH-HHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          189 LNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDK-DSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       189 L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD-~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      .+.|.+++..+-+-.-+ ..+-+|..|+  -.+|-. +.+..| .+.|-|.+      +.+.+-|+
T Consensus       354 IKtL~La~N~iE~LSGL-~KLYSLvnLDl~~N~Ie~ldeV~~I-G~LPCLE~------l~L~~NPl  411 (490)
T KOG1259|consen  354 IKTLKLAQNKIETLSGL-RKLYSLVNLDLSSNQIEELDEVNHI-GNLPCLET------LRLTGNPL  411 (490)
T ss_pred             EeeeehhhhhHhhhhhh-HhhhhheeccccccchhhHHHhccc-ccccHHHH------HhhcCCCc
Confidence            77777765443332110 1223444444  222221 123333 35678888      88887774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	354
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 64/265 (24%)

Query: 13  TSLKKLDLYPVQNLTERNEATKNVTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVGKHLE 72
             L+ + +Y V ++T  NE+ +++  +LKNL  + RL         L+     I    L+
Sbjct: 378 QELEYMAVY-VSDIT--NESLESIGTYLKNLC-DFRL--------VLLDREERITDLPLD 425

Query: 73  DIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSW--EILDISGSDVSDFG 130
           + +     + I      K+   +   R+  L D  +  +   S     + +     SD G
Sbjct: 426 NGVR---SLLIGCK---KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479

Query: 131 LVKVAQMCKSLKAVDIR---ITAAGVSEFLLHCHSLETLRCGGSPRSN------HAARRC 181
           L++ ++ C +L+ +++R    +   ++  +    SL  L   G   S         AR  
Sbjct: 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539

Query: 182 LGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKP 241
             I       V                         P +++            I+     
Sbjct: 540 WNIELIPSRRV-------------------------PEVNQQGEIREMEHPAHILA---- 570

Query: 242 SPFGFRGFEVPREAFPD--ITLDDP 264
               +      R   P     L +P
Sbjct: 571 ----YYSLAGQRTDCPTTVRVLKEP 591

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 20/183 (10%)

Query: 13  TSLKKLDLYPVQNLTERNEATKNVTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVGKHLE 72
           TSL+ L+ Y  +      +  + +    ++L  + ++         L  +       +LE
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLV-SVKVGDF----EILELVGFFKAAANLE 246

Query: 73  DIIGDLDEIAINFPVDIKIAIASIARRRKL-------LADDVIMSLADSSW--EILDISG 123
           +        ++N  + +     ++   RKL       +  + +  L   +     LD+  
Sbjct: 247 E----FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY 302

Query: 124 SDVSDFGLVKVAQMCKSLKAVDIR--ITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRC 181
           + +       + Q C +L+ ++ R  I   G+     +C  L+ LR              
Sbjct: 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362

Query: 182 LGI 184
             +
Sbjct: 363 GLV 365

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 119 LDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLR 167
           ++     VS  GL+ +AQ C+ L+ + +    IT   +     +  +L   R
Sbjct: 358 MEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 11/118 (9%)

Query: 105 DDVIMSLADS--SWEILDISGSD---VSDFGLVKVAQMCKSLKAVDI----RITAAGVSE 155
              +  LA    S E+L+   ++   +S   L  +A+ C+SL +V +     +   G  +
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240

Query: 156 FLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLR 213
              +                      +   K     +      E+    +   A  +R
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM--PILFPFAAQIR 296

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 44/274 (16%), Positives = 89/274 (32%), Gaps = 67/274 (24%)

Query: 15  LKKLDLYPVQNLTERNEATKNVTAFLKNLQFN-SRLPHEKSKPPSLVSLCLGIVGKHLED 73
           L+KL      N T R++ + N+   + ++Q    RL   K     L              
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-------------- 247

Query: 74  IIGDLDEI----AIN-FPVDIKIAIASIARRRKLLADDVI------MSLADSSW-----E 117
           ++  L  +    A N F +  KI + +   R K + D +       +SL   S      E
Sbjct: 248 LV--LLNVQNAKAWNAFNLSCKILLTT---RFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 118 ILDISGS--DVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLHCHSLETLRCGGSPRSN 175
           +  +     D     L +  ++  +     + I A  + + L      +  +     +  
Sbjct: 303 VKSLLLKYLDCRPQDLPR--EVLTTNPRR-LSIIAESIRDGLAT---WDNWKHVNCDKLT 356

Query: 176 HAARRCLGILKPKLNDVEGDSWEELV----NTDIGHGAQSLRWFVWPNIDKDSIEMMSTE 231
                 L +L+P   +     ++ L     +  I      L   +W ++ K  + ++  +
Sbjct: 357 TIIESSLNVLEP--AEYR-KMFDRLSVFPPSAHIP--TILLS-LIWFDVIKSDVMVVVNK 410

Query: 232 CPR---IIVNPKPSPFGFRGFEVPREAFPDITLD 262
             +   +   PK S              P I L+
Sbjct: 411 LHKYSLVEKQPKESTIS----------IPSIYLE 434

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 38/264 (14%), Positives = 80/264 (30%), Gaps = 54/264 (20%)

Query: 13  TSLKKLDLYPVQNLTERNEATKNVTAFLKNLQFNSRLPHEKSKPPSLVSLCLGIVGKHLE 72
             ++ ++L    +  + N        ++        +    S    L  + L      + 
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYV-----YPWIEAMSSSYTWLEEIRLK--RMVVT 118

Query: 73  DIIGDLDEIAINFP----VDIK-------IAIASIARRRKLL-------------ADDVI 108
           D    L+ IA +F     + +          +A+IA   + L             +   +
Sbjct: 119 D--DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176

Query: 109 MSLADS--SWEILDISG--SDVSDFGLVKVAQMCKSLKAVDIR--ITAAGVSEFLLHCHS 162
               D+  S   L+IS   S+VS   L ++   C +LK++ +   +    ++  L     
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ 236

Query: 163 LETLRCGGSPRSNHA---------ARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLR 213
           LE L  GG                   C  +    L+         L    +      L 
Sbjct: 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELR--CLSGFWDAVPAYLPA--VYSVCSRLT 292

Query: 214 W--FVWPNIDKDSIEMMSTECPRI 235
                +  +    +  +  +CP++
Sbjct: 293 TLNLSYATVQSYDLVKLLCQCPKL 316

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 25/187 (13%), Positives = 59/187 (31%), Gaps = 46/187 (24%)

Query: 13  TSLKKLDLYPVQNLTERN------EATKNVTAFLKNLQFNSRLPHEKSKPPSLVSLCLGI 66
             L++L ++P +            +   +V+     L+             S++  C  +
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE-------------SVLYFCRQM 384

Query: 67  -------VGKH---LEDIIGDLDEIAINFPVDIKI---AIASIARRRKLLA--------- 104
                  + ++   +      + E      + ++       +I    K L          
Sbjct: 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLT 444

Query: 105 DDVIMSLAD--SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIR---ITAAGVSEFLLH 159
           D V   +       E+L ++ +  SD G+  V   C SL+ ++IR        +      
Sbjct: 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK 504

Query: 160 CHSLETL 166
             ++ +L
Sbjct: 505 LETMRSL 511

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 22/131 (16%)

Query: 56  PPSLVSLCLGIVGKHLEDI--IGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLAD 113
           P +++     +    L+      D + +   +   +   I +++     L          
Sbjct: 58  PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL---------- 107

Query: 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETL--- 166
              E + +    V+D  L  +A+  K+ K + +      +  G++     C +L+ L   
Sbjct: 108 ---EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164

Query: 167 RCGGSPRSNHA 177
                  S H 
Sbjct: 165 ESDVDDVSGHW 175

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 19/123 (15%)

Query: 117 EILDISGSDVSDFGLVKVAQMCKSLKAVDI--RITAAGVSEFLLHCHSLETLRCGGSPRS 174
             L++S + V  + LVK+   C  L+ + +   I  AG+      C  L  LR   S   
Sbjct: 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPF 351

Query: 175 NHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVW--PNIDKDSIEMMSTEC 232
                  + +           + + LV+  +  G   L   ++    +   ++  ++   
Sbjct: 352 VM--EPNVAL-----------TEQGLVS--VSMGCPKLESVLYFCRQMTNAALITIARNR 396

Query: 233 PRI 235
           P +
Sbjct: 397 PNM 399

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	354
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.64
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.57
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.54
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.5
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.35
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.1
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.03
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.03
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.03
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.98
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.97
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.97
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.93
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.93
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.89
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.87
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.86
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.82
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.72
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.68
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.66
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.65
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.65
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.63
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.61
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.59
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.57
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.56
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.53
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.51
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.44
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.41
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.4
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.38
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.37
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.37
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.34
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.3
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.27
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.2
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.1
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.03
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.99
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	96.97
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	96.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	96.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.76
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	96.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.65
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	96.63
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.53
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	96.37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.02
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	95.94
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	95.77
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	95.48
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	95.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.22
3e6j_A	229	Variable lymphocyte receptor diversity region; var	95.14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	95.09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	95.04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	95.01
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	94.99
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.88
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.85
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.22
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	94.05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	93.94
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	93.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	92.87
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	92.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	91.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	89.55
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	85.8
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	81.77

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.64  E-value=9.3e-17  Score=143.40  Aligned_cols=102  Identities=10%  Similarity=0.110  Sum_probs=91.6

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhc---CCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLH---CHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~---Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      ..|++|||++|.|||.|+..+. .|++|++|+|    .|||.|+..|+..   |++|++|+|++|..|||.|+.+|+. |
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C
T ss_pred             ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C
Confidence            5799999999999999999996 5999999999    7999999999973   8899999999999999999999985 9


Q ss_pred             CCCcEeeCCCccccchhhhhccCccccccccCCCCHHH--HHHHHhcCCccee
Q 018571          187 PKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS--IEMMSTECPRIIV  237 (354)
Q Consensus       187 p~L~~L~ls~~~~td~~~i~~~~~~L~~L~C~~ITD~~--l~~L~~~Cp~L~~  237 (354)
                      |+|++|++++                    |++|||.+  +..+...-|++++
T Consensus       139 ~~L~~L~L~~--------------------c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          139 RNLKYLFLSD--------------------LPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             TTCCEEEEES--------------------CTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             CCCCEEECCC--------------------CCCCCchHHHHHHHHHHCCCcEE
Confidence            9999999975                    78888876  5667778888776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.60  E-value=1.1e-14  Score=147.86  Aligned_cols=158  Identities=17%  Similarity=0.237  Sum_probs=111.5

Q ss_pred             CCCHHHHHHhhc--CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE-------eecH----HHHHHHHhcCCCCCEEEe
Q 018571          102 LLADDVIMSLAD--SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI-------RITA----AGVSEFLLHCHSLETLRC  168 (354)
Q Consensus       102 ~ltD~~L~~la~--~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL-------~ITd----~gl~~La~~Cp~Le~L~L  168 (354)
                      .+++.++..+..  ++|++|+++.+++++.++..++..|++|++|+|       .+|+    .|+..+..+|++|++|++
T Consensus       364 ~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L  443 (592)
T 3ogk_B          364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF  443 (592)
T ss_dssp             CCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred             ccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence            466666655544  666666664446666666666666666666666       3443    566666767777777777


Q ss_pred             cCCC-CCcHHHHHHHHhcCCCCcEeeCCCccccchhhh--hccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCC
Q 018571          169 GGSP-RSNHAARRCLGILKPKLNDVEGDSWEELVNTDI--GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPS  242 (354)
Q Consensus       169 ~gC~-~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i--~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~  242 (354)
                      ++|. .++|.++..++.+||+|++|+++++.+++.++.  ..+|++|+.|+   |. +|+.++..+...||+|+.     
T Consensus       444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~-----  517 (592)
T 3ogk_B          444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRY-----  517 (592)
T ss_dssp             ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCE-----
T ss_pred             ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCe-----
Confidence            6665 377777888887788888888877777776543  46678888887   65 788888888888888888     


Q ss_pred             ceeecCCCCCccccccccCCCCcc
Q 018571          243 PFGFRGFEVPREAFPDITLDDPFV  266 (354)
Q Consensus       243 ~L~l~gC~~s~~al~~v~~~~~~v  266 (354)
                       |++.+|.++..++..+....|.+
T Consensus       518 -L~ls~n~it~~~~~~l~~~~p~l  540 (592)
T 3ogk_B          518 -LWVQGYRASMTGQDLMQMARPYW  540 (592)
T ss_dssp             -EEEESCBCCTTCTTGGGGCCTTE
T ss_pred             -eECcCCcCCHHHHHHHHHhCCCc
Confidence             88888888887777766665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.60  E-value=5.9e-15  Score=149.59  Aligned_cols=164  Identities=13%  Similarity=0.103  Sum_probs=129.5

Q ss_pred             CCHHHHHHhhc--CCccEEEee--------cC-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEe
Q 018571          103 LADDVIMSLAD--SSWEILDIS--------GS-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRC  168 (354)
Q Consensus       103 ltD~~L~~la~--~~L~~LdLs--------~C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L  168 (354)
                      ++|.++..++.  ++|++|+|+        +| .+++.|+..++..|++|+.|++   .+++.++..++.+|++|++|++
T Consensus       325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L  404 (594)
T 2p1m_B          325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL  404 (594)
T ss_dssp             GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred             cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEe
Confidence            56666766665  788888883        45 7889999888888999999977   8889999999888999999999


Q ss_pred             c-----CCCCCc----HHHHHHHHhcCCCCcEeeCCCccccchhh--hhccCccccccc--cCCCCHHHHHHHHhcCCcc
Q 018571          169 G-----GSPRSN----HAARRCLGILKPKLNDVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRI  235 (354)
Q Consensus       169 ~-----gC~~It----D~sL~~La~~cp~L~~L~ls~~~~td~~~--i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L  235 (354)
                      +     +|..++    |.++..+..+|++|+.|++++ .++|.+.  ++..+++|+.|+  +..+||.++..++.+||+|
T Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L  483 (594)
T 2p1m_B          405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL  483 (594)
T ss_dssp             EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred             ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence            8     788888    888888888899999999877 6666654  345578888887  5568888888888888888


Q ss_pred             eecCCCCceeecCCCCCccccccccCCCCccccccccc
Q 018571          236 IVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSA  273 (354)
Q Consensus       236 ~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~~~~~~  273 (354)
                      +.      |++.+|++++.+++.+....+.++.++...
T Consensus       484 ~~------L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~  515 (594)
T 2p1m_B          484 RK------LEIRDCPFGDKALLANASKLETMRSLWMSS  515 (594)
T ss_dssp             CE------EEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred             CE------EECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence            88      888888887776666665566666655543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.60  E-value=4.8e-15  Score=150.41  Aligned_cols=173  Identities=20%  Similarity=0.212  Sum_probs=148.5

Q ss_pred             CCCCHHHHHHhhc--CCccEEEeec----------C-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCC
Q 018571          101 KLLADDVIMSLAD--SSWEILDISG----------S-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLE  164 (354)
Q Consensus       101 ~~ltD~~L~~la~--~~L~~LdLs~----------C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le  164 (354)
                      ..++|.++..++.  ++|++|+|++          | .+++.|+..++..|++|++|++   .+++.++..++.+|++|+
T Consensus       327 ~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~  406 (592)
T 3ogk_B          327 NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLC  406 (592)
T ss_dssp             GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCC
T ss_pred             CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCc
Confidence            3467888888765  8999999995          8 9999999999999999999999   999999999999999999


Q ss_pred             EEEecC---CCCCcH----HHHHHHHhcCCCCcEeeCCCcc--ccchhh--hhccCccccccc--cCCCCHHHHHHHHhc
Q 018571          165 TLRCGG---SPRSNH----AARRCLGILKPKLNDVEGDSWE--ELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTE  231 (354)
Q Consensus       165 ~L~L~g---C~~ItD----~sL~~La~~cp~L~~L~ls~~~--~td~~~--i~~~~~~L~~L~--C~~ITD~~l~~L~~~  231 (354)
                      +|++++   |..+++    .++..+..+|++|++|+++.|.  +++.+.  ++..+++|++|+  +.++||.++..+..+
T Consensus       407 ~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  486 (592)
T 3ogk_B          407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG  486 (592)
T ss_dssp             EEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC
T ss_pred             EEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc
Confidence            999984   678886    6888899999999999997654  566654  467789999998  667999999999999


Q ss_pred             CCcceecCCCCceeecCCCCCccccccccCCCCccccccccccccccc
Q 018571          232 CPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRF  279 (354)
Q Consensus       232 Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~~~~~~W~v~~~  279 (354)
                      |++|+.      |++.+|++++.+++.+....+.++.++.....++..
T Consensus       487 ~~~L~~------L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          487 CPNLQK------LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CTTCCE------EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CcccCe------eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            999999      999999998888888777778888877766555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.57  E-value=8.8e-15  Score=138.35  Aligned_cols=151  Identities=19%  Similarity=0.231  Sum_probs=130.2

Q ss_pred             CCCHHHHHHhhc-CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCC-CCCEEEecCCC-C
Q 018571          102 LLADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCH-SLETLRCGGSP-R  173 (354)
Q Consensus       102 ~ltD~~L~~la~-~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp-~Le~L~L~gC~-~  173 (354)
                      .+++.....+.. ++|++|+|++| .+++.++..+...|++|++|+|    .+++.++..+..+|+ +|++|++++|. .
T Consensus       129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~  208 (336)
T 2ast_B          129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  208 (336)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence            478888888887 99999999999 9999999998888999999999    789999999899999 99999999998 7


Q ss_pred             CcHHHHHHHHhcCCCCcEeeCCCcc-ccchhhh-hccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecC
Q 018571          174 SNHAARRCLGILKPKLNDVEGDSWE-ELVNTDI-GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRG  248 (354)
Q Consensus       174 ItD~sL~~La~~cp~L~~L~ls~~~-~td~~~i-~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~g  248 (354)
                      ++|.++..+..+||+|++|+++++. +++.+.. -..+++|+.|+   |..+++.++..+. .||+|+.      |++.|
T Consensus       209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~------L~l~~  281 (336)
T 2ast_B          209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKT------LQVFG  281 (336)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCE------EECTT
T ss_pred             CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCE------EeccC
Confidence            9999998888889999999999998 5655442 24568899987   8889999886664 5999999      99999


Q ss_pred             CCCCcccccccc
Q 018571          249 FEVPREAFPDIT  260 (354)
Q Consensus       249 C~~s~~al~~v~  260 (354)
                      | ++++++..+.
T Consensus       282 ~-i~~~~~~~l~  292 (336)
T 2ast_B          282 I-VPDGTLQLLK  292 (336)
T ss_dssp             S-SCTTCHHHHH
T ss_pred             c-cCHHHHHHHH
Confidence            9 7776655443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.54  E-value=4e-14  Score=133.83  Aligned_cols=150  Identities=13%  Similarity=0.209  Sum_probs=102.9

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++.++..+...|++|++|+|   .+++.+...++. |++|++|++++|..+++.++..+..+|++|+
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            667777777777777777777777777777777   677777766664 7777777777777777777777666777777


Q ss_pred             EeeCCCc-cccchhh--hhccCc-cccccc---cC-CCCHHHHHHHHhcCCcceecCCCCceeecCCC-CCccccccccC
Q 018571          191 DVEGDSW-EELVNTD--IGHGAQ-SLRWFV---WP-NIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE-VPREAFPDITL  261 (354)
Q Consensus       191 ~L~ls~~-~~td~~~--i~~~~~-~L~~L~---C~-~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~-~s~~al~~v~~  261 (354)
                      +|+++++ .+++.++  ....++ +|+.|+   |. .+||.++..+...||+|+.      |++.+|. +++..++.+ .
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~------L~l~~~~~l~~~~~~~l-~  244 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH------LDLSDSVMLKNDCFQEF-F  244 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE------EECTTCTTCCGGGGGGG-G
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE------EeCCCCCcCCHHHHHHH-h
Confidence            7777777 6665443  234556 777776   44 6777777777777777777      7777777 565555544 2


Q ss_pred             CCCccccccc
Q 018571          262 DDPFVNDIDP  271 (354)
Q Consensus       262 ~~~~v~~~~~  271 (354)
                      ..+.++.++.
T Consensus       245 ~l~~L~~L~l  254 (336)
T 2ast_B          245 QLNYLQHLSL  254 (336)
T ss_dssp             GCTTCCEEEC
T ss_pred             CCCCCCEeeC
Confidence            3355555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.50  E-value=5.2e-14  Score=142.60  Aligned_cols=156  Identities=14%  Similarity=0.138  Sum_probs=123.3

Q ss_pred             CCCCHHHHHHhhc--CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEEe---------ec----HHHHHHHHhcCCCCCE
Q 018571          101 KLLADDVIMSLAD--SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIR---------IT----AAGVSEFLLHCHSLET  165 (354)
Q Consensus       101 ~~ltD~~L~~la~--~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL~---------IT----d~gl~~La~~Cp~Le~  165 (354)
                      ..+++.++..+..  ++|++|+++++++++.++..++..|++|+.|+|.         +|    |.|+..++.+|++|++
T Consensus       357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~  436 (594)
T 2p1m_B          357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR  436 (594)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred             CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence            3578888887775  8889986655588998888888888999988883         34    7888888888999999


Q ss_pred             EEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhh--hccCccccccc---cCCCCHHHHHHHHhcCCcceecCC
Q 018571          166 LRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDI--GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPK  240 (354)
Q Consensus       166 L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i--~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~  240 (354)
                      |++++  .++|.++..++.++++|+.|+++++.++|.++.  ..++++|+.|+   |. +|+.++..++..||+|+.   
T Consensus       437 L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~---  510 (594)
T 2p1m_B          437 LSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRS---  510 (594)
T ss_dssp             EECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSE---
T ss_pred             EeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCE---
Confidence            99976  788888888888888899998888888777653  46688888887   54 588888888888889998   


Q ss_pred             CCceeecCCCCCccccccccCCCCc
Q 018571          241 PSPFGFRGFEVPREAFPDITLDDPF  265 (354)
Q Consensus       241 ~~~L~l~gC~~s~~al~~v~~~~~~  265 (354)
                         |++.+|+++.+++..+....|.
T Consensus       511 ---L~l~~~~~~~~~~~~l~~~lp~  532 (594)
T 2p1m_B          511 ---LWMSSCSVSFGACKLLGQKMPK  532 (594)
T ss_dssp             ---EEEESSCCBHHHHHHHHHHCTT
T ss_pred             ---EeeeCCCCCHHHHHHHHHhCCC
Confidence               8899998776665554333333

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.41  E-value=1.6e-13  Score=122.36  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=80.8

Q ss_pred             CCHHHHHHhhc-CCccEEEeecC-CCCHHHHHHHHH---hCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCC
Q 018571          103 LADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQ---MCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPR  173 (354)
Q Consensus       103 ltD~~L~~la~-~~L~~LdLs~C-~ITD~gL~~la~---~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~  173 (354)
                      |||.++..+.. ++|++|+|++| .|||.|+..|+.   .|++|++|+|    +|||.|+..|+ +|++|++|+|++|+.
T Consensus        73 Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A           73 IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPG  151 (176)
T ss_dssp             CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTT
T ss_pred             ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCC
Confidence            99999999987 99999999999 899999999997   4789999999    79999999998 699999999999999


Q ss_pred             CcHHH--HHHHHhcCCCCcE
Q 018571          174 SNHAA--RRCLGILKPKLND  191 (354)
Q Consensus       174 ItD~s--L~~La~~cp~L~~  191 (354)
                      |||.+  ...+-...|+++.
T Consensus       152 Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          152 VKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             CCCHHHHHHHHHHHCTTCEE
T ss_pred             CCchHHHHHHHHHHCCCcEE
Confidence            99976  4567788999875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=3.5e-12  Score=125.09  Aligned_cols=150  Identities=9%  Similarity=0.021  Sum_probs=124.3

Q ss_pred             CCCHHHHHHhhc------CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHh----cCCCCCEEEe
Q 018571          102 LLADDVIMSLAD------SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLL----HCHSLETLRC  168 (354)
Q Consensus       102 ~ltD~~L~~la~------~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~----~Cp~Le~L~L  168 (354)
                      .+++.....++.      ++|++|+|++|.++|.|+..++..+++|+.|+|   .|++.|+..|+.    .+++|++|+|
T Consensus        83 ~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~L  162 (372)
T 3un9_A           83 RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL  162 (372)
T ss_dssp             CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEEC
T ss_pred             CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeC
Confidence            477766555432      589999999999999999999998999999999   999999988875    4788999999


Q ss_pred             cCCCCCcHHHHHHHH---hcCCCCcEeeCCCccccchhhh-----hccCccccccc--cCCCCHHHHHHHHh---cCCcc
Q 018571          169 GGSPRSNHAARRCLG---ILKPKLNDVEGDSWEELVNTDI-----GHGAQSLRWFV--WPNIDKDSIEMMST---ECPRI  235 (354)
Q Consensus       169 ~gC~~ItD~sL~~La---~~cp~L~~L~ls~~~~td~~~i-----~~~~~~L~~L~--C~~ITD~~l~~L~~---~Cp~L  235 (354)
                      ++| .+++.+...++   ..++.|++|+++++.+.|.|+.     -..+++|+.|+  ..+|||.++..++.   .++.|
T Consensus       163 s~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L  241 (372)
T 3un9_A          163 SNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL  241 (372)
T ss_dssp             CSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSC
T ss_pred             CCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCC
Confidence            998 58998888876   4688999999999999988753     24456899988  66899999887754   68999


Q ss_pred             eecCCCCceeecCCCCCcccccc
Q 018571          236 IVNPKPSPFGFRGFEVPREAFPD  258 (354)
Q Consensus       236 ~~~p~~~~L~l~gC~~s~~al~~  258 (354)
                      +.      |++.+|++++.+...
T Consensus       242 ~~------L~Ls~N~i~~~g~~~  258 (372)
T 3un9_A          242 EL------LHLYFNELSSEGRQV  258 (372)
T ss_dssp             CE------EECTTSSCCHHHHHH
T ss_pred             CE------EeccCCCCCHHHHHH
Confidence            99      999999987766543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.25  E-value=7.3e-11  Score=114.34  Aligned_cols=134  Identities=15%  Similarity=0.237  Sum_probs=83.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHH---hCCCCcEEEE---eecHHHHHHHHh----cCCCCCEEEecCCCCCcHHHHHHHH
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDI---RITAAGVSEFLL----HCHSLETLRCGGSPRSNHAARRCLG  183 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~---~C~~L~~LdL---~ITd~gl~~La~----~Cp~Le~L~L~gC~~ItD~sL~~La  183 (354)
                      ++|++|+|++|.+++.++..++.   .|++|+.|+|   .|++.|+..++.    +|++|++|+|++|. +++.+...+.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~  237 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA  237 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH
Confidence            57777777777777666664333   5677777777   677777666555    66777777777664 6665554443


Q ss_pred             ---hcCCCCcEeeCCCccccchhhh--h-----ccCccccccc--cCCCCHHHHHHHH----hcCCcceecCCCCceeec
Q 018571          184 ---ILKPKLNDVEGDSWEELVNTDI--G-----HGAQSLRWFV--WPNIDKDSIEMMS----TECPRIIVNPKPSPFGFR  247 (354)
Q Consensus       184 ---~~cp~L~~L~ls~~~~td~~~i--~-----~~~~~L~~L~--C~~ITD~~l~~L~----~~Cp~L~~~p~~~~L~l~  247 (354)
                         ..+++|++|+++++.+++.|..  .     ..+++|+.|+  ...+++.|+..+.    .+||+|+.      |++.
T Consensus       238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~------L~l~  311 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF------LELN  311 (386)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE------EECT
T ss_pred             HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE------EEcc
Confidence               3567777777777766665432  1     1256677666  4557775544443    44677777      7777


Q ss_pred             CCCCCcc
Q 018571          248 GFEVPRE  254 (354)
Q Consensus       248 gC~~s~~  254 (354)
                      +|+++..
T Consensus       312 ~N~l~~~  318 (386)
T 2ca6_A          312 GNRFSEE  318 (386)
T ss_dssp             TSBSCTT
T ss_pred             CCcCCcc
Confidence            7775433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=121.64  Aligned_cols=146  Identities=12%  Similarity=0.097  Sum_probs=122.8

Q ss_pred             CCHHHHHHhhcCCccEEEeecCCCCHHHHHHHHHh----CCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCc
Q 018571          103 LADDVIMSLADSSWEILDISGSDVSDFGLVKVAQM----CKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSN  175 (354)
Q Consensus       103 ltD~~L~~la~~~L~~LdLs~C~ITD~gL~~la~~----C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~It  175 (354)
                      +.|..+..-..++|++|+|++|.+++.+...++..    +++|++|+|   .|++.|+..++..+++|++|+|++| .++
T Consensus        61 ~~~~~l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~  139 (372)
T 3un9_A           61 FQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLG  139 (372)
T ss_dssp             HHTHHHHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCC
T ss_pred             hcCHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCC
Confidence            34555555555899999999999999999888765    479999999   9999999999999999999999998 789


Q ss_pred             HHHHHHHHh----cCCCCcEeeCCCccccchhhh--h---ccCccccccc--cCCCCHHHHHHHH---hcCCcceecCCC
Q 018571          176 HAARRCLGI----LKPKLNDVEGDSWEELVNTDI--G---HGAQSLRWFV--WPNIDKDSIEMMS---TECPRIIVNPKP  241 (354)
Q Consensus       176 D~sL~~La~----~cp~L~~L~ls~~~~td~~~i--~---~~~~~L~~L~--C~~ITD~~l~~L~---~~Cp~L~~~p~~  241 (354)
                      |.+...++.    .++.|++|+++++.+++.|..  +   ..+++|+.|+  ...|+|.|+..+.   ..++.|+.    
T Consensus       140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~----  215 (372)
T 3un9_A          140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE----  215 (372)
T ss_dssp             HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE----
T ss_pred             HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe----
Confidence            999888764    468999999999999887753  2   4578899998  6679999987775   56789999    


Q ss_pred             CceeecCCCCCccc
Q 018571          242 SPFGFRGFEVPREA  255 (354)
Q Consensus       242 ~~L~l~gC~~s~~a  255 (354)
                        |++.+|.+++.+
T Consensus       216 --L~Ls~N~i~~~g  227 (372)
T 3un9_A          216 --LNVAYNGAGDTA  227 (372)
T ss_dssp             --EECCSSCCCHHH
T ss_pred             --EECCCCCCCHHH
Confidence              999999987754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.23  E-value=2.7e-11  Score=117.36  Aligned_cols=167  Identities=10%  Similarity=0.005  Sum_probs=127.7

Q ss_pred             CCCHHHHH----Hhhc-CCccEEEeecCCCCHHHHHHHHHhC------------CCCcEEEE---eecHHHHHHHHh---
Q 018571          102 LLADDVIM----SLAD-SSWEILDISGSDVSDFGLVKVAQMC------------KSLKAVDI---RITAAGVSEFLL---  158 (354)
Q Consensus       102 ~ltD~~L~----~la~-~~L~~LdLs~C~ITD~gL~~la~~C------------~~L~~LdL---~ITd~gl~~La~---  158 (354)
                      .+++.++.    .+.. ++|++|+|++|.+++.+...++..+            ++|++|+|   .+++.++..++.   
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            46664433    3444 9999999999999999887776543            99999999   888888886554   


Q ss_pred             cCCCCCEEEecCCCCCcHHHHHHHHh----cCCCCcEeeCCCccccchhhh-----hccCccccccc--cCCCCHHHHHH
Q 018571          159 HCHSLETLRCGGSPRSNHAARRCLGI----LKPKLNDVEGDSWEELVNTDI-----GHGAQSLRWFV--WPNIDKDSIEM  227 (354)
Q Consensus       159 ~Cp~Le~L~L~gC~~ItD~sL~~La~----~cp~L~~L~ls~~~~td~~~i-----~~~~~~L~~L~--C~~ITD~~l~~  227 (354)
                      +|++|++|++++| .+++.++..+..    ++++|++|+++++.+++.|..     -..+++|+.|+  ...|++.+...
T Consensus       185 ~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          185 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            8999999999998 688888777655    799999999999998876542     25678899988  55799998887


Q ss_pred             HHhc-----CCcceecCCCCceeecCCCCCccc---ccccc-CCCCccccccccccc
Q 018571          228 MSTE-----CPRIIVNPKPSPFGFRGFEVPREA---FPDIT-LDDPFVNDIDPSAWA  275 (354)
Q Consensus       228 L~~~-----Cp~L~~~p~~~~L~l~gC~~s~~a---l~~v~-~~~~~v~~~~~~~W~  275 (354)
                      +...     +++|+.      |++.+|.++..+   ++... ...+.++.++...-.
T Consensus       264 l~~~l~~~~~~~L~~------L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          264 VVDAFSKLENIGLQT------LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHTCSSCCCCE------EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHhhccCCCeEE------EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            7653     899999      999999987753   33222 334666666654333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.14  E-value=1e-10  Score=114.94  Aligned_cols=133  Identities=16%  Similarity=0.142  Sum_probs=63.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHHH----hCCCCcEEEE---eecHHHHHHHHh---cCCCCCEEEecCCCCCcHHHHHHHH
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQ----MCKSLKAVDI---RITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCLG  183 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~----~C~~L~~LdL---~ITd~gl~~La~---~Cp~Le~L~L~gC~~ItD~sL~~La  183 (354)
                      ++|++|+|++|.+++.|+..++.    .+++|++|+|   .+++.|+..++.   +|++|++|++++| .+++.+...++
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~  305 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLC  305 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHH
Confidence            44444444444444444444332    2444444444   444444333332   2455555555544 34444444443


Q ss_pred             hc----CCCCcEeeCCCccccchhh--h---hccCccccccc--cCCCCHHHHHHHHhc----CCcceecCCCCceeecC
Q 018571          184 IL----KPKLNDVEGDSWEELVNTD--I---GHGAQSLRWFV--WPNIDKDSIEMMSTE----CPRIIVNPKPSPFGFRG  248 (354)
Q Consensus       184 ~~----cp~L~~L~ls~~~~td~~~--i---~~~~~~L~~L~--C~~ITD~~l~~L~~~----Cp~L~~~p~~~~L~l~g  248 (354)
                      ..    .++|++|+++++.+++.+.  +   -..+++|+.|+  ...+++.++..+...    ++.|+.      |++.+
T Consensus       306 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~------L~L~~  379 (461)
T 1z7x_W          306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV------LWLAD  379 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE------EECTT
T ss_pred             HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE------EECCC
Confidence            32    2345555555444444332  1   12345666665  335666666555542    556666      66666


Q ss_pred             CCCCc
Q 018571          249 FEVPR  253 (354)
Q Consensus       249 C~~s~  253 (354)
                      |.+++
T Consensus       380 n~i~~  384 (461)
T 1z7x_W          380 CDVSD  384 (461)
T ss_dssp             SCCCH
T ss_pred             CCCCh
Confidence            66654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.10  E-value=5e-10  Score=109.90  Aligned_cols=152  Identities=11%  Similarity=0.083  Sum_probs=117.7

Q ss_pred             CCCCHHHHHHhhc--CCccEEEeecCCCCHHHHHHHH---HhCCCCcEEEE---eecHHHHHHHHhcCC----CCCEEEe
Q 018571          101 KLLADDVIMSLAD--SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDI---RITAAGVSEFLLHCH----SLETLRC  168 (354)
Q Consensus       101 ~~ltD~~L~~la~--~~L~~LdLs~C~ITD~gL~~la---~~C~~L~~LdL---~ITd~gl~~La~~Cp----~Le~L~L  168 (354)
                      ..+++..+..+..  ++|++|+|++|++++.++..+.   ..|++|++|+|   .+++.++..++..++    +|++|++
T Consensus        13 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L   92 (461)
T 1z7x_W           13 EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL   92 (461)
T ss_dssp             CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEEC
T ss_pred             cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEc
Confidence            3478877766444  9999999999999998766554   44899999999   899999999998888    7999999


Q ss_pred             cCCCCCcHHHHHHHH---hcCCCCcEeeCCCccccchhhh--hc----cCccccccc--cCCCCHHHHHHH---HhcCCc
Q 018571          169 GGSPRSNHAARRCLG---ILKPKLNDVEGDSWEELVNTDI--GH----GAQSLRWFV--WPNIDKDSIEMM---STECPR  234 (354)
Q Consensus       169 ~gC~~ItD~sL~~La---~~cp~L~~L~ls~~~~td~~~i--~~----~~~~L~~L~--C~~ITD~~l~~L---~~~Cp~  234 (354)
                      ++|. +++.++..+.   ..|++|++|+++++.+.+.+..  +.    ..++|+.|+  ..++++.+...+   ...|++
T Consensus        93 ~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  171 (461)
T 1z7x_W           93 QNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD  171 (461)
T ss_dssp             TTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTT
T ss_pred             cCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCC
Confidence            9985 7776544443   5689999999999988876542  22    245788887  457888765444   456999


Q ss_pred             ceecCCCCceeecCCCCCccccccc
Q 018571          235 IIVNPKPSPFGFRGFEVPREAFPDI  259 (354)
Q Consensus       235 L~~~p~~~~L~l~gC~~s~~al~~v  259 (354)
                      |+.      +++.+|.+++.....+
T Consensus       172 L~~------L~L~~n~i~~~~~~~l  190 (461)
T 1z7x_W          172 FKE------LTVSNNDINEAGVRVL  190 (461)
T ss_dssp             CCE------EECCSSBCHHHHHHHH
T ss_pred             CCE------EECcCCCcchHHHHHH
Confidence            999      9999999776655444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.98  E-value=5.2e-09  Score=92.40  Aligned_cols=90  Identities=13%  Similarity=0.038  Sum_probs=68.5

Q ss_pred             CCccEEEeecC-CCCHHHHHHHHHh---CCCCcEEEE---eecHHHHHHHHh---cCCCCCEEEecCCCCCcHHHHHHHH
Q 018571          114 SSWEILDISGS-DVSDFGLVKVAQM---CKSLKAVDI---RITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCLG  183 (354)
Q Consensus       114 ~~L~~LdLs~C-~ITD~gL~~la~~---C~~L~~LdL---~ITd~gl~~La~---~Cp~Le~L~L~gC~~ItD~sL~~La  183 (354)
                      ++|++|+|++| .|+|.|+..++..   +++|++|+|   .|+|.|+..|+.   .++.|++|+|++| .++|.+..+|+
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~  114 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALV  114 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHH
Confidence            78888888888 8888888877654   678888888   888888777764   4678888888876 58888877776


Q ss_pred             h---cCCCCcEeeC--CCccccchhh
Q 018571          184 I---LKPKLNDVEG--DSWEELVNTD  204 (354)
Q Consensus       184 ~---~cp~L~~L~l--s~~~~td~~~  204 (354)
                      .   .++.|++|++  ++..+.+.|.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~  140 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVE  140 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHH
Confidence            4   3567888888  6555555553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.86  E-value=1.7e-08  Score=89.02  Aligned_cols=105  Identities=15%  Similarity=0.117  Sum_probs=87.4

Q ss_pred             CCCHHHHHHhhc-----CCccEEEeecCCCCHHHHHHHHHh---CCCCcEEEE---eecHHHHHHHHh---cCCCCCEEE
Q 018571          102 LLADDVIMSLAD-----SSWEILDISGSDVSDFGLVKVAQM---CKSLKAVDI---RITAAGVSEFLL---HCHSLETLR  167 (354)
Q Consensus       102 ~ltD~~L~~la~-----~~L~~LdLs~C~ITD~gL~~la~~---C~~L~~LdL---~ITd~gl~~La~---~Cp~Le~L~  167 (354)
                      .++|+++..++.     ++|++|+|++|.|+|.|...++..   +++|++|+|   .|++.|+.+|+.   .++.|++|+
T Consensus        48 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~  127 (185)
T 1io0_A           48 NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELR  127 (185)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEE
T ss_pred             CCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEE
Confidence            689988877764     799999999999999998877653   689999999   999999988885   477899999


Q ss_pred             ec-CCCCCcHHHHHHHHh---cCCCCcEeeCCCccccchhhhh
Q 018571          168 CG-GSPRSNHAARRCLGI---LKPKLNDVEGDSWEELVNTDIG  206 (354)
Q Consensus       168 L~-gC~~ItD~sL~~La~---~cp~L~~L~ls~~~~td~~~i~  206 (354)
                      |+ .+..++|.+...|+.   .++.|++|+++++.+.+.|.++
T Consensus       128 L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~i~  170 (185)
T 1io0_A          128 IDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRAS  170 (185)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHHHH
T ss_pred             ecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHHHH
Confidence            94 245799998777664   4689999999988887777543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.86  E-value=1.4e-09  Score=104.74  Aligned_cols=156  Identities=8%  Similarity=0.042  Sum_probs=101.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHh----CCCCcEEEE---eecHHHHHHHHh---cCC-CCCEEEecCCCCCcHHHHHHH
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQM----CKSLKAVDI---RITAAGVSEFLL---HCH-SLETLRCGGSPRSNHAARRCL  182 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~----C~~L~~LdL---~ITd~gl~~La~---~Cp-~Le~L~L~gC~~ItD~sL~~L  182 (354)
                      ++|++|+|++|.+++.+...++..    |++|++|+|   .+++.|+..++.   .++ +|++|+|++| .+++.+...+
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l  187 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAEL  187 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHH
T ss_pred             CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHH
Confidence            588888888888888777766654    578888888   777766666543   344 8888888887 3554444333


Q ss_pred             H---hcC-CCCcEeeCCCccccchhhh------hccCccccccc--cCCCCHHHH---HHHHhcCCcceecCCCCceeec
Q 018571          183 G---ILK-PKLNDVEGDSWEELVNTDI------GHGAQSLRWFV--WPNIDKDSI---EMMSTECPRIIVNPKPSPFGFR  247 (354)
Q Consensus       183 a---~~c-p~L~~L~ls~~~~td~~~i------~~~~~~L~~L~--C~~ITD~~l---~~L~~~Cp~L~~~p~~~~L~l~  247 (354)
                      +   ..+ ++|++|+++++.+.+.|..      ....++|+.|+  ...+++.++   ..+...+++|+.      +++.
T Consensus       188 ~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~------L~L~  261 (362)
T 3goz_A          188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT------VYLD  261 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE------EEEE
T ss_pred             HHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE------EEec
Confidence            3   234 4888888888887775532      23346788887  556777544   444466788888      8888


Q ss_pred             CCC---CCccccccccC---CCCcccccccccccc
Q 018571          248 GFE---VPREAFPDITL---DDPFVNDIDPSAWAV  276 (354)
Q Consensus       248 gC~---~s~~al~~v~~---~~~~v~~~~~~~W~v  276 (354)
                      +|.   ++.+.+..+..   ..+.++.++...+.+
T Consensus       262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             cCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            887   55554443332   334445555544443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.77  E-value=6.5e-09  Score=100.12  Aligned_cols=164  Identities=11%  Similarity=0.020  Sum_probs=114.0

Q ss_pred             CCCHHHHHHhhc------CCccEEEeecCCCCHHHHHHHHH---hC-CCCcEEEE---eecHHHHHHHHhc----CCCCC
Q 018571          102 LLADDVIMSLAD------SSWEILDISGSDVSDFGLVKVAQ---MC-KSLKAVDI---RITAAGVSEFLLH----CHSLE  164 (354)
Q Consensus       102 ~ltD~~L~~la~------~~L~~LdLs~C~ITD~gL~~la~---~C-~~L~~LdL---~ITd~gl~~La~~----Cp~Le  164 (354)
                      .+++.....+..      ++|++|+|++|.+++.+...++.   .+ ++|+.|+|   .+++.+...++..    |++|+
T Consensus        62 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           62 SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence            355554444443      78999999999888766665544   34 89999999   7887777766654    67999


Q ss_pred             EEEecCCCCCcHHHHHHHHh---cCC-CCcEeeCCCccccchhhh--h---ccC-ccccccc--cCCCCHHHHHHHH---
Q 018571          165 TLRCGGSPRSNHAARRCLGI---LKP-KLNDVEGDSWEELVNTDI--G---HGA-QSLRWFV--WPNIDKDSIEMMS---  229 (354)
Q Consensus       165 ~L~L~gC~~ItD~sL~~La~---~cp-~L~~L~ls~~~~td~~~i--~---~~~-~~L~~L~--C~~ITD~~l~~L~---  229 (354)
                      +|++++| .+++.+...++.   .++ .|++|+++++.+++.+..  +   ..+ ++|+.|+  ...|++.++..+.   
T Consensus       142 ~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l  220 (362)
T 3goz_A          142 SLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF  220 (362)
T ss_dssp             EEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             EEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence            9999987 567655555432   244 999999999988776532  1   233 5899988  5568886655443   


Q ss_pred             -hcCCcceecCCCCceeecCCCCCcccc---ccccCCCCcccccccc
Q 018571          230 -TECPRIIVNPKPSPFGFRGFEVPREAF---PDITLDDPFVNDIDPS  272 (354)
Q Consensus       230 -~~Cp~L~~~p~~~~L~l~gC~~s~~al---~~v~~~~~~v~~~~~~  272 (354)
                       ..+++|+.      |++.+|.++....   ..+....+.++.++..
T Consensus       221 ~~~~~~L~~------L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          221 SSIPNHVVS------LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             HHSCTTCCE------EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hcCCCCceE------EECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence             34679999      9999999777544   4444445556655443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=4.2e-09  Score=103.25  Aligned_cols=135  Identities=13%  Similarity=0.016  Sum_probs=98.2

Q ss_pred             CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHh-cCCCCCEEEecCCCC--CcHHHHHHHH---
Q 018571          114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLL-HCHSLETLRCGGSPR--SNHAARRCLG---  183 (354)
Q Consensus       114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~-~Cp~Le~L~L~gC~~--ItD~sL~~La---  183 (354)
                      |+|++|+|++| .++-..   +  .+++|++|+|   .+++.++..|+. .+|+|++|+|+.+..  ..|.++..|+   
T Consensus       172 P~L~~L~L~g~~~l~l~~---~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIGK---K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             TTCCEEEEECCBTCBCCS---C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             CCCcEEEEeCCCCceecc---c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            89999999988 444222   1  2789999999   888999988885 589999999864321  1222222221   


Q ss_pred             --hcCCCCcEeeCCCccccchhh--hh--ccCccccccc--cCCCCHHHHHHHH---hcCCcceecCCCCceeecCCCCC
Q 018571          184 --ILKPKLNDVEGDSWEELVNTD--IG--HGAQSLRWFV--WPNIDKDSIEMMS---TECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       184 --~~cp~L~~L~ls~~~~td~~~--i~--~~~~~L~~L~--C~~ITD~~l~~L~---~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                        ..+|+|++|++..+.+.|.+.  ++  ..+++|+.|+  +..++|.|...+.   .++++|+.      |++.+|.++
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~------L~L~~n~i~  320 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF------INMKYNYLS  320 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSE------EECCSBBCC
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceE------EECCCCcCC
Confidence              358999999998888887653  22  3567888888  7789999988886   45889999      999999988


Q ss_pred             ccccccc
Q 018571          253 REAFPDI  259 (354)
Q Consensus       253 ~~al~~v  259 (354)
                      ++.+..+
T Consensus       321 d~~~~~l  327 (362)
T 2ra8_A          321 DEMKKEL  327 (362)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7765443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.62  E-value=6.7e-08  Score=94.65  Aligned_cols=120  Identities=8%  Similarity=0.075  Sum_probs=94.2

Q ss_pred             hcCCccEEEeecCCCCHHHHHHHHH-hCCCCcEEEEee------cHHHHHHHH-----hcCCCCCEEEecCCCCCcHHHH
Q 018571          112 ADSSWEILDISGSDVSDFGLVKVAQ-MCKSLKAVDIRI------TAAGVSEFL-----LHCHSLETLRCGGSPRSNHAAR  179 (354)
Q Consensus       112 a~~~L~~LdLs~C~ITD~gL~~la~-~C~~L~~LdL~I------Td~gl~~La-----~~Cp~Le~L~L~gC~~ItD~sL  179 (354)
                      ..++|++|+|..|.+++.++..++. .+|+|++|+|.+      .+.++..|+     ..||+|++|+|.+|. ++|.+.
T Consensus       191 ~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~  269 (362)
T 2ra8_A          191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVV  269 (362)
T ss_dssp             BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHH
T ss_pred             cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHH
Confidence            3589999999999999999999985 599999999943      232332222     358999999999874 677666


Q ss_pred             HHHHh--cCCCCcEeeCCCccccchhh--hh---ccCccccccc--cCCCCHHHHHHHHhcC
Q 018571          180 RCLGI--LKPKLNDVEGDSWEELVNTD--IG---HGAQSLRWFV--WPNIDKDSIEMMSTEC  232 (354)
Q Consensus       180 ~~La~--~cp~L~~L~ls~~~~td~~~--i~---~~~~~L~~L~--C~~ITD~~l~~L~~~C  232 (354)
                      ..++.  .+|+|++|+++...+.|.|.  +.   ..+++|+.|+  ...|||.++..|...+
T Consensus       270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al  331 (362)
T 2ra8_A          270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL  331 (362)
T ss_dssp             HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred             HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence            77764  67999999999888888774  22   4568888887  4479999999999855

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.52  E-value=3.2e-08  Score=87.19  Aligned_cols=123  Identities=13%  Similarity=0.036  Sum_probs=81.0

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|++++|.+++-.  .+ ..+++|+.|++   .+++-  ..+ .++++|++|++++|. +++.....++ .+++|+
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~l~~n~~~~~--~~l-~~l~~L~~L~l~~n~-l~~~~~~~l~-~l~~L~  115 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GI-EYAHNIKDLTINNIHATNY--NPI-SGLSNLERLRIMGKD-VTSDKIPNLS-GLTSLT  115 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TG-GGCTTCSEEEEESCCCSCC--GGG-TTCTTCCEEEEECTT-CBGGGSCCCT-TCTTCC
T ss_pred             CCccEEeccCCCccChH--HH-hcCCCCCEEEccCCCCCcc--hhh-hcCCCCCEEEeECCc-cCcccChhhc-CCCCCC
Confidence            67888888888766422  23 34788888888   44332  233 358888888888764 4544344444 478888


Q ss_pred             EeeCCCccccchhhh-hccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571          191 DVEGDSWEELVNTDI-GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR  253 (354)
Q Consensus       191 ~L~ls~~~~td~~~i-~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~  253 (354)
                      +|+++++.+++...- -..+++|+.|+   |..+++-.   ....+|+|+.      |++.+|.++.
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~------L~l~~n~i~~  173 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKS------LNIQFDGVHD  173 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCE------EECTTBCCCC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCE------EECCCCCCcC
Confidence            888888877764332 24567788777   44466542   3567888888      8888888654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.44  E-value=1.3e-08  Score=87.07  Aligned_cols=127  Identities=11%  Similarity=-0.011  Sum_probs=89.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++..+......+++|+.|+|   .+++.  . ...++++|++|++++|.-.+.  +..+..++++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~   98 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIFGG--LDMLAEKLPNLT   98 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCCSC--CCHHHHHCTTCC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCchH--HHHHHhhCCCCC
Confidence            789999999998876555544456899999999   55543  2 334689999999998864331  334455689999


Q ss_pred             EeeCCCccccchh--hhhccCccccccc--cCCCCHHHH--HHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNT--DIGHGAQSLRWFV--WPNIDKDSI--EMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~--~i~~~~~~L~~L~--C~~ITD~~l--~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +|+++++.+++..  .....+++|+.|+  ...+++...  ......+|+|+.      +++.+|..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~------L~l~~n~~  159 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY------LDGYDRED  159 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE------ETTEETTS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE------ecCCCCCh
Confidence            9999988877643  2235677888887  333443321  246678999999      99999884

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.35  E-value=4.9e-08  Score=81.74  Aligned_cols=119  Identities=13%  Similarity=0.044  Sum_probs=72.6

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++++.|++++|.+++..+......+++|+.|++   .+++.   ....++++|++|++++|.-.+ . +..+...+++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~-~-~~~~~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSG-G-LEVLAEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCS-C-THHHHHHCTTCC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccc-h-HHHHhhhCCCCC
Confidence            678888888887775444444455788888888   45443   223467888888888775332 1 233444578888


Q ss_pred             EeeCCCccccchh--hhhccCccccccc--cCCCCHHHH--HHHHhcCCccee
Q 018571          191 DVEGDSWEELVNT--DIGHGAQSLRWFV--WPNIDKDSI--EMMSTECPRIIV  237 (354)
Q Consensus       191 ~L~ls~~~~td~~--~i~~~~~~L~~L~--C~~ITD~~l--~~L~~~Cp~L~~  237 (354)
                      +|+++++.+++..  .....+++|+.|+  ...+++..-  ......+|+|+.
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            8888877766633  1234556666665  223433321  234566777777

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.31  E-value=2e-07  Score=81.95  Aligned_cols=127  Identities=11%  Similarity=0.085  Sum_probs=93.8

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.. ++|++|++++|.+++..  .+. .+++|+.|++   .+++.+...+. ++++|++|++++| .+++.....++ .+
T Consensus        62 l~~l~~L~~L~l~~n~~~~~~--~l~-~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l~-~l  135 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATNYN--PIS-GLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKIN-TL  135 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSCCG--GGT-TCTTCCEEEEECTTCBGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHHT-TC
T ss_pred             HhcCCCCCEEEccCCCCCcch--hhh-cCCCCCEEEeECCccCcccChhhc-CCCCCCEEEecCC-ccCcHhHHHHh-hC
Confidence            444 89999999999766543  344 4999999999   77776666665 6999999999987 46665566666 48


Q ss_pred             CCCcEeeCCCcc-ccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571          187 PKLNDVEGDSWE-ELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR  253 (354)
Q Consensus       187 p~L~~L~ls~~~-~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~  253 (354)
                      ++|++|+++++. +.+.. .-..+++|+.|+  ...|++-.   ....+|+|+.      +++.|.++.+
T Consensus       136 ~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~------L~l~~N~i~~  195 (197)
T 4ezg_A          136 PKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQ------LYAFSQTIGG  195 (197)
T ss_dssp             SSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCE------EEECBC----
T ss_pred             CCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCE------EEeeCcccCC
Confidence            999999999987 66544 235678899987  44566632   4568899999      9999988643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.15  E-value=8.2e-06  Score=73.70  Aligned_cols=94  Identities=14%  Similarity=0.161  Sum_probs=57.0

Q ss_pred             CCCHHHHHHhhc-----CCccEEEeecCCCCHHHHHHHHH---hCCCCcEEEE---eecHHHHHHHHhc---CCCCCEEE
Q 018571          102 LLADDVIMSLAD-----SSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDI---RITAAGVSEFLLH---CHSLETLR  167 (354)
Q Consensus       102 ~ltD~~L~~la~-----~~L~~LdLs~C~ITD~gL~~la~---~C~~L~~LdL---~ITd~gl~~La~~---Cp~Le~L~  167 (354)
                      .|+|++...|+.     ..|+.|+|++|.|+|.|...|+.   ..+.|++|+|   .|+|.|..+|++.   .+.|++|+
T Consensus        53 ~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~  132 (197)
T 1pgv_A           53 RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFK  132 (197)
T ss_dssp             SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEE
T ss_pred             CCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEE
Confidence            466666665553     56777777777777777665553   3566777777   6777776666653   34477777


Q ss_pred             ecCCC--CCcHHHHHHHHh---cCCCCcEeeCC
Q 018571          168 CGGSP--RSNHAARRCLGI---LKPKLNDVEGD  195 (354)
Q Consensus       168 L~gC~--~ItD~sL~~La~---~cp~L~~L~ls  195 (354)
                      |+++.  .++|.+-.+|+.   .-+.|..|+++
T Consensus       133 L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~  165 (197)
T 1pgv_A          133 ADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS  165 (197)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             CCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence            76542  566665444432   23566666664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.12  E-value=3.2e-05  Score=69.81  Aligned_cols=89  Identities=13%  Similarity=0.142  Sum_probs=70.8

Q ss_pred             HHHHhhc--CCccEEEeecC-CCCHHHHHHHHHh---CCCCcEEEE---eecHHHHHHHHh---cCCCCCEEEecCCCCC
Q 018571          107 VIMSLAD--SSWEILDISGS-DVSDFGLVKVAQM---CKSLKAVDI---RITAAGVSEFLL---HCHSLETLRCGGSPRS  174 (354)
Q Consensus       107 ~L~~la~--~~L~~LdLs~C-~ITD~gL~~la~~---C~~L~~LdL---~ITd~gl~~La~---~Cp~Le~L~L~gC~~I  174 (354)
                      .+..+..  +.|++|+|+++ +|+|+|...|+..   ...|+.|+|   .|+|.|..+||+   ..+.|++|+|++ ..|
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~I  110 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFL  110 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcC
Confidence            4444443  89999999997 9999999988865   568999999   999999877773   568899999996 469


Q ss_pred             cHHHHHHHHhcC---CCCcEeeCCC
Q 018571          175 NHAARRCLGILK---PKLNDVEGDS  196 (354)
Q Consensus       175 tD~sL~~La~~c---p~L~~L~ls~  196 (354)
                      +|.|..+|+..+   ..|++|++++
T Consensus       111 g~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          111 TPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CHHHHHHHHHHHhhCCceeEEECCC
Confidence            999999888643   3467777754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.10  E-value=1.6e-06  Score=72.44  Aligned_cols=97  Identities=14%  Similarity=0.183  Sum_probs=69.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHH-HHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAA-RRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~s-L~~La~~cp~L  189 (354)
                      ++|+.|++++|.+++.  ..+ ..+++|+.|++   .+++. +..+..++++|++|++++|. +++.. ...+ .++++|
T Consensus        42 ~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~-~~l~~L  115 (149)
T 2je0_A           42 EELEFLSTINVGLTSI--ANL-PKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPL-KKLENL  115 (149)
T ss_dssp             TTCCEEECTTSCCCCC--TTC-CCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGG-GGCTTC
T ss_pred             CCCcEEECcCCCCCCc--hhh-hcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHH-hhCCCC
Confidence            8899999999977765  333 34899999999   55543 44555679999999999886 55532 2333 458999


Q ss_pred             cEeeCCCccccchhh----hhccCccccccc
Q 018571          190 NDVEGDSWEELVNTD----IGHGAQSLRWFV  216 (354)
Q Consensus       190 ~~L~ls~~~~td~~~----i~~~~~~L~~L~  216 (354)
                      ++|+++++.+++...    ....+++|+.|+
T Consensus       116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A          116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             CEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred             CEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence            999999887766543    345567777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.03  E-value=3.4e-06  Score=79.14  Aligned_cols=42  Identities=10%  Similarity=-0.015  Sum_probs=18.3

Q ss_pred             cCCCCCEEEecCCCCCcHHHHHHHH--hcCCCCcEeeCCCcccc
Q 018571          159 HCHSLETLRCGGSPRSNHAARRCLG--ILKPKLNDVEGDSWEEL  200 (354)
Q Consensus       159 ~Cp~Le~L~L~gC~~ItD~sL~~La--~~cp~L~~L~ls~~~~t  200 (354)
                      ++++|++|+|+++...++.++..-.  ..+++|++|+++++.++
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  210 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME  210 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence            3455555555554433333332111  23455555555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.03  E-value=6.1e-06  Score=77.88  Aligned_cols=30  Identities=13%  Similarity=0.109  Sum_probs=16.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI  146 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL  146 (354)
                      ++|++|++++|.+++..-   ...+++|+.|++
T Consensus       177 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l  206 (347)
T 4fmz_A          177 TDLYSLSLNYNQIEDISP---LASLTSLHYFTA  206 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG---GGGCTTCCEEEC
T ss_pred             CCCCEEEccCCccccccc---ccCCCccceeec
Confidence            667777777665443222   223555555555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.03  E-value=2.8e-06  Score=80.22  Aligned_cols=57  Identities=11%  Similarity=0.014  Sum_probs=27.3

Q ss_pred             CCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          186 KPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       186 cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      +++|++|+++++.+.+... ...+++|+.++  ...+++...   ...+++|+.      +++.+|.++
T Consensus       176 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~------L~l~~n~l~  234 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP---VANMTRLNS------LKIGNNKIT  234 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCE------EECCSSCCC
T ss_pred             CCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch---hhcCCcCCE------EEccCCccC
Confidence            4444444444443333222 23344555554  223332221   456777777      777777753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.98  E-value=1.5e-06  Score=81.80  Aligned_cols=33  Identities=12%  Similarity=0.176  Sum_probs=14.2

Q ss_pred             CCccEEEeecCCCCHHHHHHH-HHhCCCCcEEEE
Q 018571          114 SSWEILDISGSDVSDFGLVKV-AQMCKSLKAVDI  146 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~l-a~~C~~L~~LdL  146 (354)
                      ++|++|+|++|++++..-..+ ...+++|++|+|
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L  128 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNL  128 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEE
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEc
Confidence            455555555554433222211 123455555555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.97  E-value=1.6e-06  Score=73.90  Aligned_cols=97  Identities=14%  Similarity=0.107  Sum_probs=71.3

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHH-HHHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHA-ARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~-sL~~La~~cp~L  189 (354)
                      ++|+.|+|++|.+++.  ..+ ..+++|+.|+|   .+++. +..+..++++|++|++++|. +++. .+..+. .+++|
T Consensus        49 ~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~-~l~~L  122 (168)
T 2ell_A           49 VNLEFLSLINVGLISV--SNL-PKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK-KLECL  122 (168)
T ss_dssp             GGCCEEEEESSCCCCC--SSC-CCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS-SCSCC
T ss_pred             CCCCEEeCcCCCCCCh--hhh-ccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh-cCCCC
Confidence            8999999999987765  333 34899999999   55543 44556679999999999984 4442 223333 58999


Q ss_pred             cEeeCCCccccchhh----hhccCccccccc
Q 018571          190 NDVEGDSWEELVNTD----IGHGAQSLRWFV  216 (354)
Q Consensus       190 ~~L~ls~~~~td~~~----i~~~~~~L~~L~  216 (354)
                      ++|+++++.+++...    ....+++|+.|+
T Consensus       123 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A          123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred             CEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence            999999987776543    346678888887

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.97  E-value=1e-06  Score=82.78  Aligned_cols=129  Identities=7%  Similarity=-0.012  Sum_probs=64.9

Q ss_pred             CCccEEEeecCCCCHHHHHHHH-HhCCCCcEEEE---eecHH----HHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhc
Q 018571          114 SSWEILDISGSDVSDFGLVKVA-QMCKSLKAVDI---RITAA----GVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL  185 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la-~~C~~L~~LdL---~ITd~----gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~  185 (354)
                      ++|++|+|++|+++..+-..++ ..+++|+.|+|   .+++.    +...+. .+++|++|++++|.- +...-..+ .+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l-~~~~~~~~-~~  167 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHS-PAFSCEQV-RA  167 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSS-CCCCTTSC-CC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCc-chhhHHHh-cc
Confidence            5567777776655543333332 34666777777   44431    112233 566777777766642 11100111 24


Q ss_pred             CCCCcEeeCCCccccch-hhh----hccCccccccc--cCCCC--HHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          186 KPKLNDVEGDSWEELVN-TDI----GHGAQSLRWFV--WPNID--KDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       186 cp~L~~L~ls~~~~td~-~~i----~~~~~~L~~L~--C~~IT--D~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +++|++|++++...+.. +..    ...+++|+.|+  ..+++  ......+...+++|+.      |++.++.+
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~------L~Ls~N~l  236 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHS------LDLSHNSL  236 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSS------EECTTSCC
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCE------EECCCCCC
Confidence            56677777766654432 211    12445666665  33454  2223334456666666      66666664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.93  E-value=6.3e-06  Score=77.64  Aligned_cols=119  Identities=9%  Similarity=0.086  Sum_probs=63.8

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++|.+++..-   ...+++|+.|+|   .+++-  ..+ ..+++|++|++++|. +++.  ..+ ..+++|+
T Consensus        63 ~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~l~~n~-l~~~--~~l-~~l~~L~  132 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNV--SAI-AGLQSIKTLDLTSTQ-ITDV--TPL-AGLSNLQ  132 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCC--GGG-TTCTTCCEEECTTSC-CCCC--GGG-TTCTTCC
T ss_pred             CCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCc--hhh-cCCCCCCEEECCCCC-CCCc--hhh-cCCCCCC
Confidence            566666666665544322   233666666666   33321  122 246666666666664 2221  122 3466777


Q ss_pred             EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      +|+++++.+++... -..+++|+.|+  ...+++-.  . ...+++|+.      |++.+|.++
T Consensus       133 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~------L~l~~n~l~  186 (308)
T 1h6u_A          133 VLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTT------LKADDNKIS  186 (308)
T ss_dssp             EEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCE------EECCSSCCC
T ss_pred             EEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh--h-hcCCCCCCE------EECCCCccC
Confidence            77776665554332 23456666666  22444322  1 456777777      777777753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.93  E-value=3.2e-06  Score=78.09  Aligned_cols=52  Identities=17%  Similarity=0.263  Sum_probs=23.0

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS  171 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC  171 (354)
                      ++|+.|++++|++++..  .+. .+++|+.|+|   .|++-.-   ..++++|++|++++|
T Consensus        41 ~~L~~L~l~~n~i~~l~--~l~-~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLA--GMQ-FFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRN   95 (263)
T ss_dssp             TTCSEEECTTSCCCCCT--TGG-GCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSS
T ss_pred             CcCcEEECcCCCcccch--HHh-hCCCCCEEECCCCccCCChh---hccCCCCCEEECCCC
Confidence            55555555555444321  122 2555555555   3332111   224555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.91  E-value=5e-06  Score=77.80  Aligned_cols=78  Identities=14%  Similarity=0.088  Sum_probs=34.5

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|++++..-   ...+++|+.|+|   .+++  +..+ .++++|++|++++|. +++  +..+. ++++|+
T Consensus        68 ~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~--~~~l-~~l~~L~~L~L~~n~-i~~--~~~l~-~l~~L~  137 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKD--LSSL-KDLKKLKSLSLEHNG-ISD--INGLV-HLPQLE  137 (291)
T ss_dssp             TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC--GGGG-TTCTTCCEEECTTSC-CCC--CGGGG-GCTTCC
T ss_pred             CCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCC--Chhh-ccCCCCCEEECCCCc-CCC--Chhhc-CCCCCC
Confidence            555666666554443221   223555555555   3332  1122 245555555555543 221  11122 345555


Q ss_pred             EeeCCCccccc
Q 018571          191 DVEGDSWEELV  201 (354)
Q Consensus       191 ~L~ls~~~~td  201 (354)
                      .|+++++.+++
T Consensus       138 ~L~l~~n~l~~  148 (291)
T 1h6t_A          138 SLYLGNNKITD  148 (291)
T ss_dssp             EEECCSSCCCC
T ss_pred             EEEccCCcCCc
Confidence            55555544433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.89  E-value=7.7e-06  Score=77.04  Aligned_cols=117  Identities=15%  Similarity=0.101  Sum_probs=55.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++..  .+ ..+++|+.|++   .+++..  . ..++++|++|++++|. +++.  .. ...+++|+
T Consensus       107 ~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~  176 (308)
T 1h6u_A          107 QSIKTLDLTSTQITDVT--PL-AGLSNLQVLYLDLNQITNIS--P-LAGLTNLQYLSIGNAQ-VSDL--TP-LANLSKLT  176 (308)
T ss_dssp             TTCCEEECTTSCCCCCG--GG-TTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECCSSC-CCCC--GG-GTTCTTCC
T ss_pred             CCCCEEECCCCCCCCch--hh-cCCCCCCEEECCCCccCcCc--c-ccCCCCccEEEccCCc-CCCC--hh-hcCCCCCC
Confidence            55555555555444321  12 23556666665   332211  1 2345666666666553 2221  11 23456666


Q ss_pred             EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      .|+++++.+.+... ...+++|+.|+  ...+++..  . ...+++|+.      +++.+++
T Consensus       177 ~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~------L~l~~N~  228 (308)
T 1h6u_A          177 TLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--P-LANTSNLFI------VTLTNQT  228 (308)
T ss_dssp             EEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCE------EEEEEEE
T ss_pred             EEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--c-ccCCCCCCE------EEccCCe
Confidence            66665555444332 23445566655  22333222  1 355666666      6666666

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.88  E-value=2.7e-06  Score=73.29  Aligned_cols=135  Identities=16%  Similarity=0.192  Sum_probs=87.6

Q ss_pred             CCHHHHHHhh---c-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCc
Q 018571          103 LADDVIMSLA---D-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSN  175 (354)
Q Consensus       103 ltD~~L~~la---~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~It  175 (354)
                      ++.+.+....   + ++|++|++++|++++  +..+...+++|+.|++   .|++  +..+ .++++|++|+++++. ++
T Consensus         4 lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~--~~~l-~~l~~L~~L~Ls~N~-l~   77 (176)
T 1a9n_A            4 LTAELIEQAAQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGF-PLLRRLKTLLVNNNR-IC   77 (176)
T ss_dssp             CCHHHHHTSCEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE--ECCC-CCCSSCCEEECCSSC-CC
T ss_pred             ccHHHHHHHHhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc--cccc-ccCCCCCEEECCCCc-cc
Confidence            4555554432   2 789999999997774  3445665679999999   4443  2233 468999999999885 33


Q ss_pred             HHHHHHHHhcCCCCcEeeCCCccccchhh--hhccCccccccc--cCCCCH--HHHHHHHhcCCcceecCCCCceeecCC
Q 018571          176 HAARRCLGILKPKLNDVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDK--DSIEMMSTECPRIIVNPKPSPFGFRGF  249 (354)
Q Consensus       176 D~sL~~La~~cp~L~~L~ls~~~~td~~~--i~~~~~~L~~L~--C~~ITD--~~l~~L~~~Cp~L~~~p~~~~L~l~gC  249 (354)
                      +-. ..+...+++|++|++++..+.+...  .-..+++|+.|+  ...+++  .....+...+|+|+.      +++.++
T Consensus        78 ~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~------Ld~~~n  150 (176)
T 1a9n_A           78 RIG-EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRV------LDFQKV  150 (176)
T ss_dssp             EEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSE------ETTEEC
T ss_pred             ccC-cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccce------eCCCcC
Confidence            211 1122468999999999887765443  234567788776  222322  112335678888988      888877


Q ss_pred             C
Q 018571          250 E  250 (354)
Q Consensus       250 ~  250 (354)
                      .
T Consensus       151 ~  151 (176)
T 1a9n_A          151 K  151 (176)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.87  E-value=7e-06  Score=77.15  Aligned_cols=132  Identities=11%  Similarity=0.041  Sum_probs=77.6

Q ss_pred             CCccEEEeecCCCCHH--HHHHHHHh-CCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHH-HHH-hc
Q 018571          114 SSWEILDISGSDVSDF--GLVKVAQM-CKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARR-CLG-IL  185 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~--gL~~la~~-C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~-~La-~~  185 (354)
                      ++|++|+|++|.+++.  .+..+... +++|++|+|   .++...-..+ .++++|++|+++++...++.++. .+. ..
T Consensus       121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            8899999999866654  33333321 388888888   4433221222 25778888888877655443332 221 45


Q ss_pred             CCCCcEeeCCCccccchhhh----hccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          186 KPKLNDVEGDSWEELVNTDI----GHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       186 cp~L~~L~ls~~~~td~~~i----~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      +++|++|+++++.+...+.+    ...+++|+.|+  ...+++..-......+++|+.      |++.+|.++
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~------L~Ls~N~l~  266 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS------LNLSFTGLK  266 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE------EECTTSCCS
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE------EECCCCccC
Confidence            77888888877776643322    24556777776  334444221112234577777      888887754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.86  E-value=9.1e-06  Score=84.51  Aligned_cols=118  Identities=16%  Similarity=0.139  Sum_probs=61.8

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++|.+++.  ..+. .|++|+.|+|   .|++  +..+ .+|++|+.|+|++|.- ++.  ..+ ..|++|+
T Consensus        87 ~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N~l~~--l~~l-~~l~~L~~L~Ls~N~l-~~l--~~l-~~l~~L~  156 (605)
T 1m9s_A           87 KNLGWLFLDENKIKDL--SSLK-DLKKLKSLSLEHNGISD--INGL-VHLPQLESLYLGNNKI-TDI--TVL-SRLTKLD  156 (605)
T ss_dssp             TTCCEEECCSSCCCCC--TTST-TCTTCCEEECTTSCCCC--CGGG-GGCTTCSEEECCSSCC-CCC--GGG-GSCTTCS
T ss_pred             CCCCEEECcCCCCCCC--hhhc-cCCCCCEEEecCCCCCC--Cccc-cCCCccCEEECCCCcc-CCc--hhh-cccCCCC
Confidence            5566666666544431  1222 2566666666   3332  1222 3566666666666532 221  122 2466677


Q ss_pred             EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      .|+++++.+.+... ...+++|+.|+  ...|++-  . -...|++|+.      |++.+|++
T Consensus       157 ~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~------L~L~~N~l  209 (605)
T 1m9s_A          157 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDV------LELFSQEC  209 (605)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSE------EECCSEEE
T ss_pred             EEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--h-HHccCCCCCE------EEccCCcC
Confidence            77666665554333 34556677666  3345442  1 2456777777      77777774

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.82  E-value=4.8e-06  Score=86.63  Aligned_cols=123  Identities=13%  Similarity=0.038  Sum_probs=72.8

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.. ++|+.|+|++|.+++..-  + ..|++|+.|+|   .|++  +..+ ..|++|++|+|++|.-..   +..+ .+|
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~--l-~~l~~L~~L~Ls~N~l~~--l~~l-~~l~~L~~L~Ls~N~l~~---l~~l-~~l  130 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP--L-TNLKNLGWLFLDENKIKD--LSSL-KDLKKLKSLSLEHNGISD---INGL-VHL  130 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG--G-GGCTTCCEEECCSSCCCC--CTTS-TTCTTCCEEECTTSCCCC---CGGG-GGC
T ss_pred             HccCCCCCEEEeeCCCCCCChh--h-ccCCCCCEEECcCCCCCC--Chhh-ccCCCCCEEEecCCCCCC---Cccc-cCC
Confidence            444 777788887775554322  3 34777888777   4443  2223 357778888877764322   1223 347


Q ss_pred             CCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571          187 PKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR  253 (354)
Q Consensus       187 p~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~  253 (354)
                      ++|+.|+++++.+.+... ...+++|+.|+  ...+++..-   ...|++|+.      |++.+|.++.
T Consensus       131 ~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~------L~Ls~N~i~~  189 (605)
T 1m9s_A          131 PQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQN------LYLSKNHISD  189 (605)
T ss_dssp             TTCSEEECCSSCCCCCGG-GGSCTTCSEEECCSSCCCCCGG---GTTCTTCCE------EECCSSCCCB
T ss_pred             CccCEEECCCCccCCchh-hcccCCCCEEECcCCcCCCchh---hccCCCCCE------EECcCCCCCC
Confidence            777777777776665422 24566777776  233443221   566777777      7777777543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.82  E-value=8.8e-07  Score=81.80  Aligned_cols=148  Identities=11%  Similarity=-0.055  Sum_probs=75.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---e-ecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---R-ITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~-ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L  189 (354)
                      ++|++|+|++|.+++..-..+.. +++|+.|+|   . ++......+ .++++|++|++++|.- ++..-.. -.++++|
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~L~l~~n~l-~~~~~~~-~~~l~~L  131 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGL-QELGPGL-FRGLAAL  131 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSCTTCCCCCTTTT-TTCTTCCEEECTTSCC-CCCCTTT-TTTCTTC
T ss_pred             CCCCEEECCCCccceeCHhhcCC-ccCCCEEeCCCCCCccccCHHHh-cCCcCCCEEECCCCcC-CEECHhH-hhCCcCC
Confidence            66777777777655433333333 677777777   2 333222222 3567777777776642 2110111 2346777


Q ss_pred             cEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcc
Q 018571          190 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFV  266 (354)
Q Consensus       190 ~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v  266 (354)
                      ++|++++..+..... .-..+++|+.|+  ..++++..- .....+++|+.      +++.++.++... +......+.+
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~------L~l~~n~l~~~~-~~~~~~l~~L  203 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDR------LLLHQNRVAHVH-PHAFRDLGRL  203 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCE------EECCSSCCCEEC-TTTTTTCTTC
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCE------EECCCCcccccC-HhHccCcccc
Confidence            777777665543221 123456777766  233442111 12345777777      888887753321 2222334555


Q ss_pred             ccccccc
Q 018571          267 NDIDPSA  273 (354)
Q Consensus       267 ~~~~~~~  273 (354)
                      +.++...
T Consensus       204 ~~L~l~~  210 (285)
T 1ozn_A          204 MTLYLFA  210 (285)
T ss_dssp             CEEECCS
T ss_pred             cEeeCCC
Confidence            5555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.80  E-value=1.3e-06  Score=76.84  Aligned_cols=115  Identities=9%  Similarity=0.015  Sum_probs=74.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++  +..+. .+++|+.|++   .++  .+..+...+++|++|++++|. +++  +..++ .+++|+
T Consensus        48 ~~L~~L~ls~n~l~~--l~~~~-~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~-l~~--l~~~~-~l~~L~  118 (198)
T 1ds9_A           48 KACKHLALSTNNIEK--ISSLS-GMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQ-IAS--LSGIE-KLVNLR  118 (198)
T ss_dssp             TTCSEEECSEEEESC--CCCHH-HHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEE-CCC--HHHHH-HHHHSS
T ss_pred             CCCCEEECCCCCCcc--ccccc-cCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCc-CCc--CCccc-cCCCCC
Confidence            788899998886655  22333 4788999988   555  233444567888999988874 443  22444 368888


Q ss_pred             EeeCCCccccchhh--hhccCccccccc--cCCCCH---------HHHHHHHhcCCccee
Q 018571          191 DVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDK---------DSIEMMSTECPRIIV  237 (354)
Q Consensus       191 ~L~ls~~~~td~~~--i~~~~~~L~~L~--C~~ITD---------~~l~~L~~~Cp~L~~  237 (354)
                      +|++++..+++.+.  ....+++|+.|+  ...+++         .....+...+|+|+.
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence            88888877776443  234567777776  222322         233445678889888

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.80  E-value=2.4e-07  Score=87.43  Aligned_cols=142  Identities=13%  Similarity=0.094  Sum_probs=68.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++..-..+. .+++|+.|+|   .+++.....+..++++|++|++++|.-.+-.   .. ..+++|+
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~-~~l~~L~  194 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---GQ-VVFAKLK  194 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE---CC-CCCTTCC
T ss_pred             CCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc---cc-cccccCC
Confidence            4566666666655543222222 2566666666   4443333334445666666666665422110   11 1256666


Q ss_pred             EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcccc
Q 018571          191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVND  268 (354)
Q Consensus       191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~  268 (354)
                      +|++++..+++.......+++|+.|+  ...++.  +......+++|+.      +++.++++.-..++......+.++.
T Consensus       195 ~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~------L~l~~N~~~~~~~~~~~~~~~~L~~  266 (317)
T 3o53_A          195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEH------FDLRGNGFHCGTLRDFFSKNQRVQT  266 (317)
T ss_dssp             EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCE------EECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred             EEECCCCcCCcchhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCE------EEccCCCccCcCHHHHHhccccceE
Confidence            66666655543222123445666655  223331  1222345566666      6666666553344444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.80  E-value=2.1e-06  Score=79.18  Aligned_cols=81  Identities=9%  Similarity=0.001  Sum_probs=34.8

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++.  ..+. .+++|+.|+|   .++...-. ...++++|++|++++|. +++..- ..-..+++|+
T Consensus        63 ~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~  136 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI--SALK-ELTNLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVENQ-LQSLPD-GVFDKLTNLT  136 (272)
T ss_dssp             TTCCEEECTTSCCCCC--GGGT-TCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCC
T ss_pred             CCCcEEECCCCCCCCc--hhhc-CCCCCCEEECCCCccCccChh-HhcCCcCCCEEECCCCc-CCccCH-HHhccCCCCC
Confidence            5566666666544432  1222 3556666666   33311111 11245555555555553 111000 0112345555


Q ss_pred             EeeCCCcccc
Q 018571          191 DVEGDSWEEL  200 (354)
Q Consensus       191 ~L~ls~~~~t  200 (354)
                      +|+++++.++
T Consensus       137 ~L~L~~n~l~  146 (272)
T 3rfs_A          137 YLNLAHNQLQ  146 (272)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCccC
Confidence            5555555433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.79  E-value=3.9e-06  Score=77.33  Aligned_cols=150  Identities=9%  Similarity=0.078  Sum_probs=92.3

Q ss_pred             CHHHHHHHHHHhhcCCCCCHHHHHHhhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCC
Q 018571           86 PVDIKIAIASIARRRKLLADDVIMSLAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCH  161 (354)
Q Consensus        86 P~~ik~~ll~ll~~~~~ltD~~L~~la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp  161 (354)
                      |.....++....-....++|.  ..+.+ ++|+.|++++|.+++..  .+. .+++|+.|+|   .+++  +..+ .+++
T Consensus        14 ~~~~~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~--~l~-~l~~L~~L~l~~n~l~~--~~~l-~~l~   85 (272)
T 3rfs_A           14 PDDAFAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ--GIQ-YLPNVRYLALGGNKLHD--ISAL-KELT   85 (272)
T ss_dssp             CSHHHHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCT--TGG-GCTTCCEEECTTSCCCC--CGGG-TTCT
T ss_pred             CCchHHHHHHHHhcCcccccc--cccccccceeeeeeCCCCccccc--ccc-cCCCCcEEECCCCCCCC--chhh-cCCC
Confidence            444444444433333334332  12333 89999999999766532  233 4999999999   5554  2334 4799


Q ss_pred             CCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceec
Q 018571          162 SLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVN  238 (354)
Q Consensus       162 ~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~  238 (354)
                      +|++|++++|. +++..- ..-.++++|++|+++++.++.... ....+++|+.|+  ..+++... ......+++|+. 
T Consensus        86 ~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-  161 (272)
T 3rfs_A           86 NLTYLILTGNQ-LQSLPN-GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTE-  161 (272)
T ss_dssp             TCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE-
T ss_pred             CCCEEECCCCc-cCccCh-hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCE-
Confidence            99999999984 332111 112458999999999887664322 124567788776  33444211 122356788888 


Q ss_pred             CCCCceeecCCCCC
Q 018571          239 PKPSPFGFRGFEVP  252 (354)
Q Consensus       239 p~~~~L~l~gC~~s  252 (354)
                           |++.+|.++
T Consensus       162 -----L~l~~n~l~  170 (272)
T 3rfs_A          162 -----LDLSYNQLQ  170 (272)
T ss_dssp             -----EECCSSCCC
T ss_pred             -----EECCCCCcC
Confidence                 888888754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.78  E-value=1.5e-06  Score=82.90  Aligned_cols=124  Identities=12%  Similarity=0.099  Sum_probs=56.0

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHH-------
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLG-------  183 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La-------  183 (354)
                      ++|++|+|++|.++  .+-.....+++|+.|+|   .++  .+..-..++++|++|++++|..++...- .++       
T Consensus       104 ~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~~~~~~~~~~  178 (328)
T 4fcg_A          104 SHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPE-PLASTDASGE  178 (328)
T ss_dssp             TTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCS-CSEEEC-CCC
T ss_pred             CCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccCh-hHhhccchhh
Confidence            56666666666544  12111133666666666   333  1111123566666666666643321100 010       


Q ss_pred             -hcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          184 -ILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       184 -~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                       .++++|++|+++++.++.....-..+++|+.|+  ...++.  +..-...+++|+.      |++.+|.
T Consensus       179 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~------L~Ls~n~  240 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEE------LDLRGCT  240 (328)
T ss_dssp             EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCE------EECTTCT
T ss_pred             hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCE------EECcCCc
Confidence             125666666655544332111123345555554  222331  1112345556666      6666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.77  E-value=7.8e-06  Score=76.50  Aligned_cols=122  Identities=18%  Similarity=0.159  Sum_probs=89.0

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.. ++|+.|+|++|.+++.  ..+ ..+++|+.|+|   .+++  +..+ .++++|++|++++|. +++-  ..+ ..+
T Consensus        86 l~~l~~L~~L~l~~n~l~~~--~~l-~~l~~L~~L~L~~n~i~~--~~~l-~~l~~L~~L~l~~n~-l~~~--~~l-~~l  155 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDL--SSL-KDLKKLKSLSLEHNGISD--INGL-VHLPQLESLYLGNNK-ITDI--TVL-SRL  155 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCG--GGG-TTCTTCCEEECTTSCCCC--CGGG-GGCTTCCEEECCSSC-CCCC--GGG-GGC
T ss_pred             cccCCCCCEEECCCCcCCCC--hhh-ccCCCCCEEECCCCcCCC--Chhh-cCCCCCCEEEccCCc-CCcc--hhh-ccC
Confidence            555 8999999999987763  333 44899999999   5554  2233 478999999999885 3332  233 458


Q ss_pred             CCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          187 PKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       187 p~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      ++|++|+++++.+.+... ...+++|+.|+  ...+++-  .. ...+++|+.      +++.+++++
T Consensus       156 ~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~------L~l~~n~i~  213 (291)
T 1h6t_A          156 TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDV------LELFSQECL  213 (291)
T ss_dssp             TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSE------EEEEEEEEE
T ss_pred             CCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC--hh-hccCCCCCE------EECcCCccc
Confidence            999999999988776544 45678899887  4456653  22 567899999      999998843

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.74  E-value=1.1e-05  Score=80.54  Aligned_cols=15  Identities=0%  Similarity=0.009  Sum_probs=8.3

Q ss_pred             cCCcceecCCCCceeecCCCC
Q 018571          231 ECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       231 ~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      .+++|+.      +++.+|.+
T Consensus       442 ~l~~L~~------L~L~~N~l  456 (520)
T 2z7x_B          442 KLEALQE------LNVASNQL  456 (520)
T ss_dssp             GCTTCCE------EECCSSCC
T ss_pred             cCCCCCE------EECCCCcC
Confidence            5555555      55555553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.73  E-value=2.3e-05  Score=77.62  Aligned_cols=80  Identities=6%  Similarity=-0.081  Sum_probs=40.2

Q ss_pred             cCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcce
Q 018571          159 HCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRII  236 (354)
Q Consensus       159 ~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~  236 (354)
                      .+++|++|++++|.-.+-.   .+ ..+++|+.|+++++..++...+ ..+++|+.|+  ...+++.  . -...|++|+
T Consensus       285 ~l~~L~~L~L~~n~l~~~~---~~-~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~  356 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDIS---PI-SNLKNLTYLTLYFNNISDISPV-SSLTKLQRLFFYNNKVSDV--S-SLANLTNIN  356 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCG---GG-GGCTTCSEEECCSSCCSCCGGG-GGCTTCCEEECCSSCCCCC--G-GGTTCTTCC
T ss_pred             CCCccCeEEcCCCcccCch---hh-cCCCCCCEEECcCCcCCCchhh-ccCccCCEeECCCCccCCc--h-hhccCCCCC
Confidence            4555555555555322111   12 2456666666666555443332 3456666665  2234432  1 234667777


Q ss_pred             ecCCCCceeecCCCCC
Q 018571          237 VNPKPSPFGFRGFEVP  252 (354)
Q Consensus       237 ~~p~~~~L~l~gC~~s  252 (354)
                      .      +++.+|.++
T Consensus       357 ~------L~l~~n~l~  366 (466)
T 1o6v_A          357 W------LSAGHNQIS  366 (466)
T ss_dssp             E------EECCSSCCC
T ss_pred             E------EeCCCCccC
Confidence            7      777777643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.72  E-value=5.1e-07  Score=90.95  Aligned_cols=138  Identities=12%  Similarity=0.094  Sum_probs=73.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++|.++...-..+. .+++|+.|+|   .++......+..++++|++|+|++|.-.+-.   .+ .++++|+
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~---~~-~~l~~L~  194 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---GQ-VVFAKLK  194 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE---CC-CCCTTCC
T ss_pred             CCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc---cc-ccCCCCC
Confidence            5677777777765543222222 3677777777   4444333444445677777777776522211   11 1367777


Q ss_pred             EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCC
Q 018571          191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDP  264 (354)
Q Consensus       191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~  264 (354)
                      .|++++..+++.......+++|+.|+  ...++.  +......+++|+.      +++.|+++....+|......+
T Consensus       195 ~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~------L~l~~N~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEH------FDLRGNGFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCE------EECTTCCBCHHHHHHHHTTCH
T ss_pred             EEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCE------EEcCCCCCcCcchHHHHHhCC
Confidence            77777666554322223456666665  333442  2222345566666      777777765334444333333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.72  E-value=1.1e-06  Score=85.91  Aligned_cols=128  Identities=12%  Similarity=-0.031  Sum_probs=63.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      +++++|+|++|.+++..-..+.. +++|+.|+|   .++..--.....++++|++|+|++|.- ++..-..+ .++++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~  106 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAF-NGLANLE  106 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTT-TTCTTCC
T ss_pred             CccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhc-cCcccCC
Confidence            56677777776655433233333 667777776   221000001113466677777766642 21111122 2366677


Q ss_pred             EeeCCCccccchhhh---hccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          191 DVEGDSWEELVNTDI---GHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       191 ~L~ls~~~~td~~~i---~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      +|+++++.+++....   -..+++|++|+  ..+++...-..+...+++|+.      +++.+|.
T Consensus       107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~------L~L~~n~  165 (455)
T 3v47_A          107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV------LDLTFNK  165 (455)
T ss_dssp             EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE------EECTTCC
T ss_pred             EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE------EeCCCCc
Confidence            777766655542221   23455666665  333443222223456667777      7776666

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.68  E-value=2.9e-05  Score=76.86  Aligned_cols=81  Identities=16%  Similarity=0.076  Sum_probs=42.1

Q ss_pred             cCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcce
Q 018571          159 HCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRII  236 (354)
Q Consensus       159 ~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~  236 (354)
                      +|++|++|++++|.-.+..   . ...+++|+.|+++++...+... ...+++|+.|+  ..++++..-   ...+++|+
T Consensus       263 ~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~  334 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNIS---P-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKLQ  334 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCG---G-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTCC
T ss_pred             cCCCCCEEECCCCccCccc---c-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccCC
Confidence            4555555555554322111   1 2235566666665555444322 23456677766  234443321   35778888


Q ss_pred             ecCCCCceeecCCCCCc
Q 018571          237 VNPKPSPFGFRGFEVPR  253 (354)
Q Consensus       237 ~~p~~~~L~l~gC~~s~  253 (354)
                      .      +++.+|.++.
T Consensus       335 ~------L~l~~n~l~~  345 (466)
T 1o6v_A          335 R------LFFYNNKVSD  345 (466)
T ss_dssp             E------EECCSSCCCC
T ss_pred             E------eECCCCccCC
Confidence            8      8888887543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.66  E-value=1.2e-06  Score=80.48  Aligned_cols=99  Identities=11%  Similarity=0.007  Sum_probs=44.9

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|++++..-..+. .+++|+.|+|   .++......+ .++++|++|+++++.-.+-. -.. -.++++|+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~  127 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLE-NFP-IGHLKTLK  127 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTSCCCCST-TCC-CTTCTTCC
T ss_pred             cCCcEEECCCCcCCccCHHHcc-CCcCCCEEECCCCccCccChhhh-cCCccccEEECCCCCccccC-chh-cccCCCCC
Confidence            5666666666654432222222 2566666666   2322111112 24566666666655321100 000 12356666


Q ss_pred             EeeCCCccccchh--hhhccCccccccc
Q 018571          191 DVEGDSWEELVNT--DIGHGAQSLRWFV  216 (354)
Q Consensus       191 ~L~ls~~~~td~~--~i~~~~~~L~~L~  216 (354)
                      +|++++..+.+..  ..-..+++|+.|+
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             EEECcCCccceecCchhhccCCCCCEEE
Confidence            6666655544311  1123345566655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.66  E-value=1.7e-05  Score=77.44  Aligned_cols=59  Identities=15%  Similarity=0.195  Sum_probs=34.6

Q ss_pred             CCccEEEeecCCCCHHHHHH-HHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCC
Q 018571          114 SSWEILDISGSDVSDFGLVK-VAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSP  172 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~-la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~  172 (354)
                      ++|++|+|++|.+++..+.. ....+++|++|+|   .++...-..+..++++|++|+++++.
T Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A          103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            67777777777766654443 1223677777777   44432222223467777777777663

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.65  E-value=1.6e-06  Score=87.02  Aligned_cols=56  Identities=16%  Similarity=0.196  Sum_probs=24.0

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS  171 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC  171 (354)
                      ++|++|+|++|++++..-..+. .|++|+.|+|   .+++..-..+ .++++|++|+++++
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n  110 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVET  110 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTS
T ss_pred             CCceEEECCCCcCCccCccccc-CchhCCEEeCcCCcCCccCHhhh-cCcccccccccccc
Confidence            5555555555544432222222 2555555555   2222111112 24555555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.65  E-value=1.2e-06  Score=81.53  Aligned_cols=129  Identities=15%  Similarity=0.013  Sum_probs=51.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++.........+++|+.|++   .++...-. ...++++|++|++++|. +++..+......+++|+
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLT  178 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCC
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCc-cccccchhHHhhCcCCC
Confidence            455555555553332221111223555555555   22211111 11245555555555542 11110111122345555


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +|+++++.+++... .-..+++|+.|+  ...+++.... ....+++|+.      +++.+|.+
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~------L~L~~N~l  235 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQV------LDYSLNHI  235 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG-GGTTCTTCCE------EECTTSCC
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh-hccCcccCCE------eECCCCCC
Confidence            55555554443211 112344555554  2222221111 1234556666      66666653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.64  E-value=3.4e-06  Score=77.78  Aligned_cols=127  Identities=9%  Similarity=-0.022  Sum_probs=76.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++..-..+ ..+++|+.|+|   .++...-..+ .++++|++|+++++. +++..-..+ ..+++|+
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~  180 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNR-ISSVPERAF-RGLHSLD  180 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCEECTTTT-TTCTTCC
T ss_pred             cCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHh-ccCCCccEEECCCCc-ccccCHHHh-cCccccC
Confidence            788888888886664332223 33788888888   4442221112 357888888888773 332111112 2478888


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +|++++..+++... .-..+++|+.|+  ..++++... .....+++|+.      +++.++++
T Consensus       181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~------L~l~~N~~  237 (285)
T 1ozn_A          181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQY------LRLNDNPW  237 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCE------EECCSSCE
T ss_pred             EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HHcccCcccCE------EeccCCCc
Confidence            88888776655422 124567777776  334554322 23457888888      88888884

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.63  E-value=3.3e-06  Score=80.46  Aligned_cols=131  Identities=16%  Similarity=0.136  Sum_probs=75.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|++++..-..+ ..+++|++|+|   .++.-.......++++|++|++++|..+++..-..+ ..+++|+
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~  177 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNLSSSWF-KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLE  177 (353)
T ss_dssp             TTCCEEECCSSCCSSCCHHHH-TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEE
T ss_pred             CCCCEEECCCCcCCcCCHhHh-CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCC
Confidence            677777777776554332223 33777777777   444211101224577777777777654443211122 2367777


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR  253 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~  253 (354)
                      +|+++++.+.+... .-..+++|+.|+  ...++... ..+...+++|+.      +++.+|.++.
T Consensus       178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~------L~L~~n~l~~  236 (353)
T 2z80_A          178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL-EIFVDVTSSVEC------LELRDTDLDT  236 (353)
T ss_dssp             EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH-HHHHHHTTTEEE------EEEESCBCTT
T ss_pred             EEECCCCCcCccCHHHHhccccCCeecCCCCccccch-hhhhhhcccccE------EECCCCcccc
Confidence            77776665543311 123467788877  34455433 344567899999      9999998654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.63  E-value=9e-07  Score=82.43  Aligned_cols=132  Identities=9%  Similarity=-0.020  Sum_probs=89.1

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.. ++|++|+|++|.++...-..+ ..+++|+.|+|   .+++..+.....++++|++|++++|. +++.....+ ..+
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l  198 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSL  198 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTC
T ss_pred             hhhccCCCEEECCCCcCCccchhhc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHh-cCC
Confidence            444 899999999997654332233 34899999999   66653333344578999999999984 333211223 358


Q ss_pred             CCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          187 PKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       187 p~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      ++|++|++++..+++... ....+++|+.|+  ...+++.....+....++|+.      +++.|+++
T Consensus       199 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~------L~L~~N~~  260 (306)
T 2z66_A          199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF------LNLTQNDF  260 (306)
T ss_dssp             TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE------EECTTCCE
T ss_pred             CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE------EEccCCCe
Confidence            999999999987766432 235678899887  445554433333322348999      99999995

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.61  E-value=1.2e-05  Score=74.20  Aligned_cols=122  Identities=12%  Similarity=0.038  Sum_probs=88.0

Q ss_pred             Hhhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhc
Q 018571          110 SLAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL  185 (354)
Q Consensus       110 ~la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~  185 (354)
                      .+.. ++|+.|+|++|++++..-   ...+++|+.|+|   .+++  +..+. . ++|++|++++|. +++-  ..+ .+
T Consensus        58 ~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~--l~~~~-~-~~L~~L~L~~N~-l~~~--~~l-~~  126 (263)
T 1xeu_A           58 GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKN--LNGIP-S-ACLSRLFLDNNE-LRDT--DSL-IH  126 (263)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSC--CTTCC-C-SSCCEEECCSSC-CSBS--GGG-TT
T ss_pred             HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCC--cCccc-c-CcccEEEccCCc-cCCC--hhh-cC
Confidence            4445 899999999997776443   345999999999   5544  22232 2 899999999985 4332  233 35


Q ss_pred             CCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          186 KPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       186 cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      +++|+.|++++..+++... ...+++|+.|+  ...+++.   .....+++|+.      +++.+++++
T Consensus       127 l~~L~~L~Ls~N~i~~~~~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~------L~l~~N~~~  185 (263)
T 1xeu_A          127 LKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNW------IDLTGQKCV  185 (263)
T ss_dssp             CTTCCEEECTTSCCCBCGG-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCE------EEEEEEEEE
T ss_pred             cccccEEECCCCcCCCChH-HccCCCCCEEECCCCcCcch---HHhccCCCCCE------EeCCCCccc
Confidence            8999999999988776543 34578898887  4456554   34567899999      999999843

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.59  E-value=6.7e-06  Score=78.26  Aligned_cols=143  Identities=15%  Similarity=0.203  Sum_probs=93.3

Q ss_pred             cCCccEEEeecCCCCHHHHH-HHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCC
Q 018571          113 DSSWEILDISGSDVSDFGLV-KVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK  188 (354)
Q Consensus       113 ~~~L~~LdLs~C~ITD~gL~-~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~  188 (354)
                      .++++.|+|++++++.  +- .+.. +++|+.|+|   .++  .+..-..++++|++|+|++|. ++  .+-.-..++++
T Consensus        80 ~~~l~~L~L~~n~l~~--lp~~l~~-l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~-l~--~lp~~l~~l~~  151 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQ--FPDQAFR-LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNP-LR--ALPASIASLNR  151 (328)
T ss_dssp             STTCCEEEEESSCCSS--CCSCGGG-GTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCC-CC--CCCGGGGGCTT
T ss_pred             ccceeEEEccCCCchh--cChhhhh-CCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCc-cc--cCcHHHhcCcC
Confidence            3899999999997662  22 2444 899999999   555  222223579999999999985 33  11111345899


Q ss_pred             CcEeeCCCccccchhh--h--------hccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCcccc
Q 018571          189 LNDVEGDSWEELVNTD--I--------GHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAF  256 (354)
Q Consensus       189 L~~L~ls~~~~td~~~--i--------~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al  256 (354)
                      |++|+++++..+...-  +        -.++++|+.|+  ...++  .+..-...+++|+.      |++.+|.++  .+
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~------L~L~~N~l~--~l  221 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKS------LKIRNSPLS--AL  221 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCE------EEEESSCCC--CC
T ss_pred             CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCE------EEccCCCCC--cC
Confidence            9999998765443211  1        13478899987  33455  22233568999999      999999965  24


Q ss_pred             ccccCCCCccccccccc
Q 018571          257 PDITLDDPFVNDIDPSA  273 (354)
Q Consensus       257 ~~v~~~~~~v~~~~~~~  273 (354)
                      +......+.++.++...
T Consensus       222 ~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          222 GPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             CGGGGGCTTCCEEECTT
T ss_pred             chhhccCCCCCEEECcC
Confidence            44344455666655543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.59  E-value=4.7e-06  Score=88.17  Aligned_cols=59  Identities=8%  Similarity=0.024  Sum_probs=26.9

Q ss_pred             cCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          185 LKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       185 ~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      .|++|++|+++++..+.....-..+++|++|+  ...+++.... ....|++|+.      |++.+|.
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~------L~Ls~n~  258 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKL------LNISSNQ  258 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCE------EECCSSC
T ss_pred             cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH-HHhcCCCCCE------EECCCCc
Confidence            34555555554443332111123345566655  2334433222 2345666666      6666665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.57  E-value=2.9e-05  Score=77.47  Aligned_cols=148  Identities=11%  Similarity=0.075  Sum_probs=94.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      .+|+.|++++|.+++..+   ...+++|+.|++   .+++.....+ .++++|++|++++|.-.+-..+......+++|+
T Consensus       302 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~  377 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQ  377 (520)
T ss_dssp             CCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC
T ss_pred             CceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCC
Confidence            556666666664443221   135899999999   6666433334 478999999999886443233333344689999


Q ss_pred             EeeCCCccccchhh--hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcc
Q 018571          191 DVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFV  266 (354)
Q Consensus       191 ~L~ls~~~~td~~~--i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v  266 (354)
                      +|++++..+.+...  ....+++|+.|+  ...+++.....+   .++|+.      |++.+|.++  .+|.-....+.+
T Consensus       378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~~------L~Ls~N~l~--~ip~~~~~l~~L  446 (520)
T 2z7x_B          378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKV------LDLHSNKIK--SIPKQVVKLEAL  446 (520)
T ss_dssp             EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---CTTCCE------EECCSSCCC--CCCGGGGGCTTC
T ss_pred             EEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh---cccCCE------EECCCCccc--ccchhhhcCCCC
Confidence            99999887765221  134567888887  445664322211   168999      999999976  566544466666


Q ss_pred             cccccccccc
Q 018571          267 NDIDPSAWAV  276 (354)
Q Consensus       267 ~~~~~~~W~v  276 (354)
                      +.++...=..
T Consensus       447 ~~L~L~~N~l  456 (520)
T 2z7x_B          447 QELNVASNQL  456 (520)
T ss_dssp             CEEECCSSCC
T ss_pred             CEEECCCCcC
Confidence            6665544333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.56  E-value=9e-05  Score=74.09  Aligned_cols=85  Identities=14%  Similarity=0.015  Sum_probs=37.3

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHH--HhcCCCCCEEEecCCCCCcHHHHHHHHhcCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEF--LLHCHSLETLRCGGSPRSNHAARRCLGILKPK  188 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~L--a~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~  188 (354)
                      ++|+.|++++|.++...- .+...+++|+.|+|   .+++......  ...+++|++|++++|.-.+-.........+++
T Consensus       310 ~~L~~L~l~~n~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             TTCCEEEEESSCCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred             ccceEEEeccCccccCCH-HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence            445555555554332111 12223566666666   4444332211  12455666666665532221111122334555


Q ss_pred             CcEeeCCCccc
Q 018571          189 LNDVEGDSWEE  199 (354)
Q Consensus       189 L~~L~ls~~~~  199 (354)
                      |++|+++++..
T Consensus       389 L~~L~Ls~N~l  399 (549)
T 2z81_A          389 LTSLDISRNTF  399 (549)
T ss_dssp             CCEEECTTCCC
T ss_pred             CCEEECCCCCC
Confidence            55555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.53  E-value=4.3e-06  Score=78.81  Aligned_cols=141  Identities=9%  Similarity=-0.068  Sum_probs=77.6

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|++++|.+++...    ..+++|+.|++   .++...-..+ .++++|++|+++++. +++.....+...+++|+
T Consensus        99 ~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~  172 (317)
T 3o53_A           99 PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNE-IDTVNFAELAASSDTLE  172 (317)
T ss_dssp             TTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCC
T ss_pred             CCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhh-hccCCCCEEECCCCC-CCcccHHHHhhccCcCC
Confidence            455555555554443221    12566666666   4443211122 356778888888763 44333334455678888


Q ss_pred             EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcccc
Q 018571          191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVND  268 (354)
Q Consensus       191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~  268 (354)
                      +|+++++.+++.... ..+++|+.|+  ...++.-.-  -...+++|+.      |++.+|.++  .+|......+.++.
T Consensus       173 ~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~------L~L~~N~l~--~l~~~~~~l~~L~~  241 (317)
T 3o53_A          173 HLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTW------ISLRNNKLV--LIEKALRFSQNLEH  241 (317)
T ss_dssp             EEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECG--GGGGGTTCSE------EECTTSCCC--EECTTCCCCTTCCE
T ss_pred             EEECCCCcCcccccc-cccccCCEEECCCCcCCcchh--hhcccCcccE------EECcCCccc--chhhHhhcCCCCCE
Confidence            888877766554221 2367777776  334443211  1456788888      888888865  34444444455555


Q ss_pred             ccc
Q 018571          269 IDP  271 (354)
Q Consensus       269 ~~~  271 (354)
                      ++.
T Consensus       242 L~l  244 (317)
T 3o53_A          242 FDL  244 (317)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.52  E-value=1.9e-05  Score=74.33  Aligned_cols=55  Identities=11%  Similarity=0.134  Sum_probs=28.1

Q ss_pred             cCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCccccccc
Q 018571          208 GAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDP  271 (354)
Q Consensus       208 ~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~~~~  271 (354)
                      .+++|+.|+  ...+++.... ....+++|+.      |++.+|.++  .+|......+.++.++.
T Consensus       214 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~------L~L~~N~l~--~lp~~l~~l~~L~~L~l  270 (330)
T 1xku_A          214 GLNNLAKLGLSFNSISAVDNG-SLANTPHLRE------LHLNNNKLV--KVPGGLADHKYIQVVYL  270 (330)
T ss_dssp             TCTTCCEEECCSSCCCEECTT-TGGGSTTCCE------EECCSSCCS--SCCTTTTTCSSCCEEEC
T ss_pred             CCCCCCEEECCCCcCceeChh-hccCCCCCCE------EECCCCcCc--cCChhhccCCCcCEEEC
Confidence            455666665  2334332211 2245677777      777777754  34433344444544444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.52  E-value=2.7e-06  Score=86.41  Aligned_cols=97  Identities=13%  Similarity=-0.009  Sum_probs=44.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCC--cHHHHHHHHhcCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRS--NHAARRCLGILKPK  188 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~I--tD~sL~~La~~cp~  188 (354)
                      ++|++|+|++|.+++..-..+ ..+++|++|+|   .++...-..+ .+|++|++|++++|.-.  ....   + .++++
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~---~-~~l~~  129 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAW-HGLHHLSNLILTGNPIQSFSPGSF-SGLTSLENLVAVETKLASLESFP---I-GQLIT  129 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCCCCTTSS-TTCTTCCEEECTTSCCCCSSSSC---C-TTCTT
T ss_pred             ccCcEEeCCCCcccccCHHHh-hchhhcCEeECCCCcccccChhhc-CCcccCCEEEccCCccccccccc---c-CCCCC
Confidence            566666666665443221222 23566666666   3332211112 24666666666665321  1111   2 23566


Q ss_pred             CcEeeCCCccccchh--hhhccCccccccc
Q 018571          189 LNDVEGDSWEELVNT--DIGHGAQSLRWFV  216 (354)
Q Consensus       189 L~~L~ls~~~~td~~--~i~~~~~~L~~L~  216 (354)
                      |++|+++++.+.+..  ..-..+++|+.|+
T Consensus       130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~  159 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVD  159 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred             CCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence            666666655544311  1123445566555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.51  E-value=4.7e-06  Score=88.15  Aligned_cols=149  Identities=16%  Similarity=0.157  Sum_probs=96.7

Q ss_pred             hhc-CCccEEEeecCCCCHHHHH--HHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHH--H
Q 018571          111 LAD-SSWEILDISGSDVSDFGLV--KVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRC--L  182 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~--~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~--L  182 (354)
                      +.. ++|++|+|++|.++..-..  .+.. |++|++|+|   .++...-..+..++++|++|++++|.- ++.....  +
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~  173 (768)
T 3rgz_A           96 FKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGANVVGWVL  173 (768)
T ss_dssp             CCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC-EEETHHHHHH
T ss_pred             hccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc-CCcCChhhhh
Confidence            344 8999999999976642222  4444 999999999   555333223335789999999999863 3322222  2


Q ss_pred             HhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCcccccccc
Q 018571          183 GILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDIT  260 (354)
Q Consensus       183 a~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~  260 (354)
                      ..+|++|++|+++++.+++.... ..+++|+.|+  ..+++.. +.. ...+++|++      |++.+|.++.. +|...
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~-~~~-l~~l~~L~~------L~Ls~n~l~~~-~~~~l  243 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTG-IPF-LGDCSALQH------LDISGNKLSGD-FSRAI  243 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSC-CCB-CTTCCSCCE------EECCSSCCCSC-HHHHT
T ss_pred             hccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCC-Ccc-cccCCCCCE------EECcCCcCCCc-ccHHH
Confidence            45799999999998876654332 5678999987  3334321 112 568999999      99999996532 22223


Q ss_pred             CCCCccccccc
Q 018571          261 LDDPFVNDIDP  271 (354)
Q Consensus       261 ~~~~~v~~~~~  271 (354)
                      ...+.++.++.
T Consensus       244 ~~l~~L~~L~L  254 (768)
T 3rgz_A          244 STCTELKLLNI  254 (768)
T ss_dssp             TTCSSCCEEEC
T ss_pred             hcCCCCCEEEC
Confidence            34444554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.45  E-value=2.5e-05  Score=74.23  Aligned_cols=145  Identities=10%  Similarity=0.038  Sum_probs=88.8

Q ss_pred             CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571          114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L  189 (354)
                      ++|++|++++| .+++..-..+. .+++|+.|++   .++...-..+ ..+++|++|+++++. ++... ..+...+++|
T Consensus       149 ~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L  224 (353)
T 2z80_A          149 TKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEPKSL-KSIQNVSHLILHMKQ-HILLL-EIFVDVTSSV  224 (353)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECSC-STTHH-HHHHHHTTTE
T ss_pred             CCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCHHHH-hccccCCeecCCCCc-cccch-hhhhhhcccc
Confidence            78888888887 55544333333 3788888888   3332211223 357889999998875 33322 2334458899


Q ss_pred             cEeeCCCccccchhh----hhccCccccccc--cCCCCHHHHHHH---HhcCCcceecCCCCceeecCCCCCcccccccc
Q 018571          190 NDVEGDSWEELVNTD----IGHGAQSLRWFV--WPNIDKDSIEMM---STECPRIIVNPKPSPFGFRGFEVPREAFPDIT  260 (354)
Q Consensus       190 ~~L~ls~~~~td~~~----i~~~~~~L~~L~--C~~ITD~~l~~L---~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~  260 (354)
                      +.|++++..+.+...    ....+..++.++  ...+++.++..+   ...+++|+.      |++.+|.++  .+|.-.
T Consensus       225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~------L~Ls~N~l~--~i~~~~  296 (353)
T 2z80_A          225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE------LEFSRNQLK--SVPDGI  296 (353)
T ss_dssp             EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE------EECCSSCCC--CCCTTT
T ss_pred             cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE------EECCCCCCC--ccCHHH
Confidence            999988776654321    123345566555  557888876665   468999999      999999865  333322


Q ss_pred             -CCCCcccccc
Q 018571          261 -LDDPFVNDID  270 (354)
Q Consensus       261 -~~~~~v~~~~  270 (354)
                       ...+.++.++
T Consensus       297 ~~~l~~L~~L~  307 (353)
T 2z80_A          297 FDRLTSLQKIW  307 (353)
T ss_dssp             TTTCTTCCEEE
T ss_pred             HhcCCCCCEEE
Confidence             3344555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.44  E-value=4.8e-06  Score=84.58  Aligned_cols=130  Identities=12%  Similarity=-0.012  Sum_probs=69.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|++++|.+++..-......+++|+.|++   .++...-..+ .++++|++|++++|. +++..+.....++++|+
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLT  476 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCE-EGGGEECSCCTTCTTCC
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh-cCCCCCCEEECCCCc-CCCcchHHhhccCCCCC
Confidence            678888888875444322122234777777777   3332111112 357777777777763 22211111223467777


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      .|+++++.+++... .-..+++|+.|+  ..++++.. ......+++|+.      +++.+|.++
T Consensus       477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~------L~l~~N~l~  534 (606)
T 3vq2_A          477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLST------LDCSFNRIE  534 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCE------EECTTSCCC
T ss_pred             EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC-HHHccCCCcCCE------EECCCCcCc
Confidence            77777766554321 124456677666  22444321 112245677777      777777643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.42  E-value=1.3e-05  Score=80.79  Aligned_cols=125  Identities=14%  Similarity=0.071  Sum_probs=62.5

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eec---HHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RIT---AAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP  187 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~IT---d~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp  187 (354)
                      +++++|||++++|+.-.-..+. .+++|+.|||   .|+   +..   + .++++|++|+|+++. ++.-.-..+ .+++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~---f-~~L~~L~~L~Ls~N~-l~~l~~~~f-~~L~  124 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGA---Y-QSLSHLSTLILTGNP-IQSLALGAF-SGLS  124 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTT---T-TTCTTCCEEECTTCC-CCEECGGGG-TTCT
T ss_pred             cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEECCCCcCCCcChhH---h-cCCCCCCEEEccCCc-CCCCCHHHh-cCCC
Confidence            4567777777655532212222 3677777777   222   221   1 356677777777663 221111111 3466


Q ss_pred             CCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          188 KLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       188 ~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +|++|+++++.++.... .-..+++|++|+  ...++...+......+++|+.      |++.++.+
T Consensus       125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~------L~L~~N~l  185 (635)
T 4g8a_A          125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH------LDLSSNKI  185 (635)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE------EECCSSCC
T ss_pred             CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh------hcccCccc
Confidence            77777776665443211 123456666665  223332222233455666776      77766663

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.42  E-value=3e-05  Score=66.66  Aligned_cols=109  Identities=11%  Similarity=0.065  Sum_probs=72.8

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcH-HHHHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNH-AARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD-~sL~~La~~cp~L  189 (354)
                      ++|+.|+|++|.+++.  ..+ ..+++|+.|+|   .|+.-. ..+..++++|++|+++++.- ++ ..+..++ ++++|
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~-~l~~L  115 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGF-PLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSL-VELGDLDPLA-SLKSL  115 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCC-CCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCC-CCGGGGGGGG-GCTTC
T ss_pred             CCCCEEECCCCCCCcc--ccc-ccCCCCCEEECCCCcccccC-cchhhcCCCCCEEECCCCcC-CcchhhHhhh-cCCCC
Confidence            5899999999988763  333 34889999999   444211 12235789999999998853 33 2223344 58999


Q ss_pred             cEeeCCCccccchhh----hhccCccccccccCCCCHHHHHHH
Q 018571          190 NDVEGDSWEELVNTD----IGHGAQSLRWFVWPNIDKDSIEMM  228 (354)
Q Consensus       190 ~~L~ls~~~~td~~~----i~~~~~~L~~L~C~~ITD~~l~~L  228 (354)
                      ++|++++..+++...    +...+++|+.|+....+.......
T Consensus       116 ~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~  158 (176)
T 1a9n_A          116 TYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA  158 (176)
T ss_dssp             CEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHH
T ss_pred             CEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHHHH
Confidence            999999887765332    245678899998555555444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.42  E-value=1.2e-05  Score=85.86  Aligned_cols=13  Identities=23%  Similarity=-0.128  Sum_probs=6.8

Q ss_pred             cCCCCCEEEecCC
Q 018571          159 HCHSLETLRCGGS  171 (354)
Q Consensus       159 ~Cp~Le~L~L~gC  171 (354)
                      ++++|++|+|++|
T Consensus        95 ~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           95 GLFHLFELRLYFC  107 (844)
T ss_dssp             SCSSCCCEECTTC
T ss_pred             CCcccCEeeCcCC
Confidence            4555555555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.41  E-value=3.1e-06  Score=84.98  Aligned_cols=32  Identities=34%  Similarity=0.279  Sum_probs=15.5

Q ss_pred             CCccEEEeecCCCCHHH--HHHHHHhCCCCcEEEE
Q 018571          114 SSWEILDISGSDVSDFG--LVKVAQMCKSLKAVDI  146 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~g--L~~la~~C~~L~~LdL  146 (354)
                      ++|+.|+|++|.++..+  -..+ ..|++|+.|++
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~l  380 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSD-FGTTSLKYLDL  380 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHH-HTCSCCCEEEC
T ss_pred             CCCCEEeCcCCccCccccccccc-cccCccCEEEC
Confidence            45566666665544322  1112 23556666655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.40  E-value=1e-05  Score=73.45  Aligned_cols=127  Identities=9%  Similarity=0.039  Sum_probs=62.6

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++..-..+ ..+++|+.|+|   .++..... ...++++|++|+|+++. ++.-.- .+-..+++|+
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~  134 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQ-LKSLPS-GVFDRLTKLK  134 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred             ccCCEEECCCCcCCccCHhHh-ccCCcCCEEECCCCcccccChh-HhcccCCCCEEEcCCCc-CCCcCh-hHhccCCccc
Confidence            667777777765554222222 23667777776   34321111 12356677777777652 221100 1112466777


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      .|++++..+..... ....+++|+.|+  ...++...- .....+++|+.      +++.++++
T Consensus       135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~l~~N~~  191 (251)
T 3m19_A          135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQT------ITLFGNQF  191 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCE------EECCSCCB
T ss_pred             EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCE------EEeeCCce
Confidence            77776665543221 123455666665  223331111 12245666777      77777664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.38  E-value=2.4e-05  Score=80.70  Aligned_cols=131  Identities=11%  Similarity=0.086  Sum_probs=79.7

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.. ++|++|+|++|.++...-..+.. |++|+.|+|   .++.-.-..+ .+|++|++|++++|. +++..-..+ .++
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-~~l  120 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTF-AFCTNLTELHLMSNS-IQKIKNNPF-VKQ  120 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSC-CCCCCSCTT-TTC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccCccChhhh-ccCCCCCEEECCCCc-cCccChhHc-ccc
Confidence            444 78888888888666544344444 888888888   4442211123 368888999888874 221110122 357


Q ss_pred             CCCcEeeCCCccccchhhh-hccCccccccc--cCCCCHHHHHHHH-hcCCcceecCCCCceeecCCCC
Q 018571          187 PKLNDVEGDSWEELVNTDI-GHGAQSLRWFV--WPNIDKDSIEMMS-TECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       187 p~L~~L~ls~~~~td~~~i-~~~~~~L~~L~--C~~ITD~~l~~L~-~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      ++|++|+++++..+....- -..+++|+.|+  ...++...-..+. ..+++|+.      +++.+|.+
T Consensus       121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~------L~L~~n~l  183 (680)
T 1ziw_A          121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK------LELSSNQI  183 (680)
T ss_dssp             TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE------EECTTCCC
T ss_pred             CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE------EECCCCcc
Confidence            8888888888766543211 13567888887  2334433223332 35788888      88888874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.38  E-value=7e-06  Score=75.43  Aligned_cols=127  Identities=8%  Similarity=0.009  Sum_probs=66.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.++......+ ..+++|+.|+|   .++...-..+ .++++|++|+++++. +++..-..+ ..+++|+
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~  160 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVF-DQLVNLAELRLDRNQLKSLPPRVF-DSLTKLTYLSLGYNE-LQSLPKGVF-DKLTSLK  160 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTT-TTCSSCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCC
T ss_pred             CCCCEEECCCCcCCcCCHhHc-ccccCCCEEECCCCccCeeCHHHh-CcCcCCCEEECCCCc-CCccCHhHc-cCCcccc
Confidence            677777777775553322222 23677777777   3332221112 356777777777763 221111111 2467777


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +|++++..+++... ....+++|+.|+  ...++.-. ......+++|+.      +++.++++
T Consensus       161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~------L~l~~N~~  217 (270)
T 2o6q_A          161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKM------LQLQENPW  217 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCE------EECCSSCB
T ss_pred             eeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCE------EEecCCCe
Confidence            77777665544322 123456666665  22343211 112345677777      77777764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.37  E-value=1e-05  Score=81.01  Aligned_cols=131  Identities=18%  Similarity=0.168  Sum_probs=79.5

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++..-..+. .+++|++|+|   .++..++.....++++|++|++++|..+++.....+ .++++|+
T Consensus        74 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~  151 (549)
T 2z81_A           74 GSLEHLDLSDNHLSSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLN  151 (549)
T ss_dssp             TTCCEEECTTSCCCSCCHHHHT-TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEE
T ss_pred             ccCCEEECCCCccCccCHHHhc-cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh-hcccccC
Confidence            7888888888876655444444 3888888888   555332222335688888888888764443211123 2478888


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR  253 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~  253 (354)
                      +|+++++....... .-..+++|+.|+  ...++... ..+...+++|+.      +++.+|.++.
T Consensus       152 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~------L~L~~n~l~~  210 (549)
T 2z81_A          152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL-EIFADILSSVRY------LELRDTNLAR  210 (549)
T ss_dssp             EEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH-HHHHHSTTTBSE------EEEESCBCTT
T ss_pred             eeeccCCcccccChhhhhccccCceEecccCcccccc-hhhHhhcccccE------EEccCCcccc
Confidence            88887666544211 113456677776  23333222 234456888888      8888887544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.37  E-value=6.9e-06  Score=74.65  Aligned_cols=127  Identities=8%  Similarity=-0.004  Sum_probs=71.8

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++++.|+|++++++...-..+. .+++|+.|+|   .++...-..+ .++++|++|+++++. ++..... .-.++++|+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~  110 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQ-LASLPLG-VFDHLTQLD  110 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSC-CCCCCTT-TTTTCTTCC
T ss_pred             CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHh-ccCCcCCEEECCCCc-ccccChh-HhcccCCCC
Confidence            5678888888765544333333 3788888888   4443211112 357788888888764 2211111 123477888


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +|++++..++.... ....+++|+.|+  ..+++.-.- .....+++|+.      |++.++.+
T Consensus       111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~------L~L~~N~l  167 (251)
T 3m19_A          111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQT------LSLSTNQL  167 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE------EECCSSCC
T ss_pred             EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCE------EECCCCcC
Confidence            88887776553221 124466777776  334442111 12346677888      88888774

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.34  E-value=4.8e-06  Score=74.89  Aligned_cols=13  Identities=15%  Similarity=-0.067  Sum_probs=6.7

Q ss_pred             cCCCCCEEEecCC
Q 018571          159 HCHSLETLRCGGS  171 (354)
Q Consensus       159 ~Cp~Le~L~L~gC  171 (354)
                      +|++|++|+++++
T Consensus       103 ~l~~L~~L~l~~n  115 (239)
T 2xwt_C          103 ELPLLKFLGIFNT  115 (239)
T ss_dssp             CCTTCCEEEEEEE
T ss_pred             CCCCCCEEeCCCC
Confidence            3455555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.34  E-value=3.3e-05  Score=72.64  Aligned_cols=125  Identities=14%  Similarity=0.034  Sum_probs=72.3

Q ss_pred             CCccEEEeecCCCCHHHHH-HHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLV-KVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~-~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L  189 (354)
                      ++|+.|++++|.+++.|+. .....+++|+.|++   .++.-.  .  ...++|++|++++|. +++.....+. .+++|
T Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~--~~~~~L~~L~l~~n~-l~~~~~~~~~-~l~~L  218 (330)
T 1xku_A          145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--Q--GLPPSLTELHLDGNK-ITKVDAASLK-GLNNL  218 (330)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--S--SCCTTCSEEECTTSC-CCEECTGGGT-TCTTC
T ss_pred             ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC--c--cccccCCEEECCCCc-CCccCHHHhc-CCCCC
Confidence            5666666666655543322 11233666666666   332100  0  012567777777664 3322222233 47899


Q ss_pred             cEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          190 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       190 ~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      +.|++++..+.+... .-..+++|+.|+  ...++  .+..-...+++|+.      +++.+|.++
T Consensus       219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~------L~l~~N~i~  276 (330)
T 1xku_A          219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQV------VYLHNNNIS  276 (330)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCE------EECCSSCCC
T ss_pred             CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCE------EECCCCcCC
Confidence            999998887665432 234578899887  33455  22222467899999      999999954

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.34  E-value=1.1e-05  Score=81.29  Aligned_cols=139  Identities=9%  Similarity=-0.074  Sum_probs=90.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++...    ..+++|+.|+|   .++...-..+ .++++|++|+|+++. +++.....+...+++|+
T Consensus        99 ~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A           99 PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNE-IDTVNFAELAASSDTLE  172 (487)
T ss_dssp             TTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCC
T ss_pred             CCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCC-CCCcChHHHhhhCCccc
Confidence            778888888886654332    23688888888   5554322222 368999999999874 44433445566789999


Q ss_pred             EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcccc
Q 018571          191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVND  268 (354)
Q Consensus       191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~  268 (354)
                      +|+++++.+++.... ..+++|+.|+  ...++.-.-  -...+++|+.      |++.+|.++  .+|......+.+..
T Consensus       173 ~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~------L~Ls~N~l~--~lp~~l~~l~~L~~  241 (487)
T 3oja_A          173 HLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTW------ISLRNNKLV--LIEKALRFSQNLEH  241 (487)
T ss_dssp             EEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECG--GGGGGTTCSE------EECTTSCCC--EECTTCCCCTTCCE
T ss_pred             EEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCH--hHcCCCCccE------EEecCCcCc--ccchhhccCCCCCE
Confidence            999998877654322 2478888887  445553211  1457899999      999999965  24444444444444


Q ss_pred             c
Q 018571          269 I  269 (354)
Q Consensus       269 ~  269 (354)
                      +
T Consensus       242 L  242 (487)
T 3oja_A          242 F  242 (487)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.33  E-value=8.2e-06  Score=71.79  Aligned_cols=127  Identities=8%  Similarity=-0.024  Sum_probs=75.3

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      +++++|+|+++++++..-..+ ..+++|++|+|   .++.-.- ....++++|++|+++++. ++...- ..-..+++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~  103 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVF-DELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQLK  103 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred             CCCcEEEcCCCccCcCChhhh-cccccCcEEECCCCccCccCh-hhcCCCCCcCEEECCCCc-CCccCH-hHhcCccCCC
Confidence            578888888886664322222 34888888888   4442111 122467888888888874 221100 1123578888


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +|++++..+..... ....+++|+.|+  ...+++.. ......+++|+.      +++.++++
T Consensus       104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~------L~l~~N~~  160 (208)
T 2o6s_A          104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQY------IWLHDNPW  160 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCE------EECCSCCB
T ss_pred             EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccE------EEecCCCe
Confidence            88888776654322 124567777776  33344211 122456788888      88888874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.33  E-value=2.7e-05  Score=68.30  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=56.6

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++|.+++  +..+...+++|+.|+|   .+++  +..+. ++++|++|+++++.-.+-..+..+. .+++|+
T Consensus        70 ~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~--l~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~-~l~~L~  143 (198)
T 1ds9_A           70 ENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--LSGIE-KLVNLRVLYMSNNKITNWGEIDKLA-ALDKLE  143 (198)
T ss_dssp             TTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC--HHHHH-HHHHSSEEEESEEECCCHHHHHHHT-TTTTCS
T ss_pred             CCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc--CCccc-cCCCCCEEECCCCcCCchhHHHHHh-cCCCCC
Confidence            677777777775442  2233334567777777   5554  23333 4677777777766432222233344 367777


Q ss_pred             EeeCCCccccchh-----------hhhccCccccccccCCCCH
Q 018571          191 DVEGDSWEELVNT-----------DIGHGAQSLRWFVWPNIDK  222 (354)
Q Consensus       191 ~L~ls~~~~td~~-----------~i~~~~~~L~~L~C~~ITD  222 (354)
                      +|+++++...+..           .+-..+++|+.|+...|++
T Consensus       144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~  186 (198)
T 1ds9_A          144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV  186 (198)
T ss_dssp             EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTT
T ss_pred             EEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCH
Confidence            7777766544331           0124556777776444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.32  E-value=7.5e-06  Score=83.16  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=14.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI  146 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL  146 (354)
                      ++|++|+|++|.++.  +-.-...+++|+.|++
T Consensus       278 ~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l  308 (606)
T 3t6q_A          278 SGLQELDLTATHLSE--LPSGLVGLSTLKKLVL  308 (606)
T ss_dssp             TTCSEEECTTSCCSC--CCSSCCSCTTCCEEEC
T ss_pred             cCCCEEeccCCccCC--CChhhcccccCCEEEC
Confidence            556666666654431  1000123555555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.31  E-value=1.9e-05  Score=75.99  Aligned_cols=124  Identities=11%  Similarity=0.042  Sum_probs=70.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|++++|.++....    ..+++|+.|++   .+++.  .. ..++++|++|+++++. +++.....+ ..+++|+
T Consensus       205 ~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~  275 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNE-LEKIMYHPF-VKMQRLE  275 (390)
T ss_dssp             SSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSC-CCEEESGGG-TTCSSCC
T ss_pred             CcceEEECCCCeeeeccc----cccccccEEECCCCCCccc--HH-HcCCCCccEEECCCCc-CCCcChhHc-cccccCC
Confidence            456666776665443211    22467888888   55542  22 3467888888888774 332211122 2467888


Q ss_pred             EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCcc
Q 018571          191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPRE  254 (354)
Q Consensus       191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~  254 (354)
                      +|+++++.+++.......+++|+.|+  ...++.  +..-...+++|+.      |++.+|+++..
T Consensus       276 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~------L~L~~N~i~~~  333 (390)
T 3o6n_A          276 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLEN------LYLDHNSIVTL  333 (390)
T ss_dssp             EEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSE------EECCSSCCCCC
T ss_pred             EEECCCCcCcccCcccCCCCCCCEEECCCCccee--cCccccccCcCCE------EECCCCcccee
Confidence            88887776655433334566777776  223442  1111245677777      88888775443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.30  E-value=1.4e-05  Score=82.44  Aligned_cols=128  Identities=7%  Similarity=0.057  Sum_probs=86.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      +++++|+|+++.++...-..+.. |++|++|+|   .++...-..+ .+|++|++|++++|. ++.-.-..+ .+|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~  100 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKLEPELC-QKLPMLKVLNLQHNE-LSQLSDKTF-AFCTNLT  100 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGG-GTTCSEEECCSSCCCCCCTTHH-HHCTTCCEEECCSSC-CCCCCTTTT-TTCTTCS
T ss_pred             CCCcEEECCCCCCCCcCHHHHhC-CCcCcEEECCCCccCccCHHHH-hcccCcCEEECCCCc-cCccChhhh-ccCCCCC
Confidence            68999999999776544333444 899999999   4554332334 369999999999984 332111123 3589999


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      +|+++++.+.+... .-..+++|+.|+  ...++...... ...|++|+.      |++.+|.++
T Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~------L~L~~n~l~  158 (680)
T 1ziw_A          101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQE------LLLSNNKIQ  158 (680)
T ss_dssp             EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCE------EECCSSCCC
T ss_pred             EEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCE------EEccCCccc
Confidence            99999887654321 124678899987  23344322111 257899999      999999853

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.28  E-value=2e-05  Score=75.85  Aligned_cols=124  Identities=12%  Similarity=0.052  Sum_probs=59.5

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++.....+.. +++|+.|+|   .++...-..+ .++++|++|++++|. +++-. ..+-.++++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~-~~~~~~l~~L~  144 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERND-LSSLP-RGIFHNTPKLT  144 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred             ccCcEEECCCCcccccChhhccC-CCCcCEEECCCCCCCcCCHHHh-cCCCCCCEEECCCCc-cCcCC-HHHhcCCCCCc
Confidence            56666666666555433223332 666666666   3332211112 346666666666653 22100 01113466666


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +|+++++.+.+... .-..+++|+.|+  ...+++..    ...+++|+.      +++.++.+
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~------L~l~~n~l  198 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH------ANVSYNLL  198 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSE------EECCSSCC
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccce------eecccccc
Confidence            66666655443221 123455666665  23343322    234566666      66665553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.27  E-value=8.3e-05  Score=80.66  Aligned_cols=132  Identities=11%  Similarity=0.031  Sum_probs=73.0

Q ss_pred             hhc-CCccEEEeecCCCCHHH----------------HH-HH-HHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEe
Q 018571          111 LAD-SSWEILDISGSDVSDFG----------------LV-KV-AQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRC  168 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~g----------------L~-~l-a~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L  168 (354)
                      +.. ++|+.|+|++|.++..+                +- .+ ...+++|+.|+|   .++.. +-....++++|++|+|
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEEC
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEEC
Confidence            444 78888999888777621                11 12 125888888888   22211 1112236788888888


Q ss_pred             cCCCCCcH----HHHHHHH---hcCCCCcEeeCCCccccchhh--hhccCccccccc--cCCCCHHHHHHHHhcCCccee
Q 018571          169 GGSPRSNH----AARRCLG---ILKPKLNDVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIV  237 (354)
Q Consensus       169 ~gC~~ItD----~sL~~La---~~cp~L~~L~ls~~~~td~~~--i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~  237 (354)
                      ++|..++.    .++..+.   ..+|+|++|+++++....-..  .-..+++|+.|+  ..+++  .+. ....+++|+.
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~  599 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTD  599 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceE
Confidence            88764554    2233332   345688888887766552211  123455666665  22333  222 2345566666


Q ss_pred             cCCCCceeecCCCCC
Q 018571          238 NPKPSPFGFRGFEVP  252 (354)
Q Consensus       238 ~p~~~~L~l~gC~~s  252 (354)
                            |++.+|.++
T Consensus       600 ------L~Ls~N~l~  608 (876)
T 4ecn_A          600 ------LKLDYNQIE  608 (876)
T ss_dssp             ------EECCSSCCS
T ss_pred             ------EECcCCccc
Confidence                  666666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.27  E-value=1.2e-05  Score=72.58  Aligned_cols=128  Identities=9%  Similarity=-0.068  Sum_probs=77.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++|.|+...-..+ ..+++|+.|+|   .|+.-.- ....++++|++|+|+++. ++.-.- .....+++|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L~  115 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTNQ-LTVLPS-AVFDRLVHLK  115 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred             CCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcCh-hhcccCCCcCEEECCCCc-CCccCh-hHhCcchhhC
Confidence            788999999986664322223 34788999998   4432111 122468889999998873 332111 1123578899


Q ss_pred             EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      .|++++..+.........+++|+.|+  ..+++.-.- .....+++|+.      +++.|.++.
T Consensus       116 ~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~l~~N~~~  172 (229)
T 3e6j_A          116 ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTH------AYLFGNPWD  172 (229)
T ss_dssp             EEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCE------EECTTSCBC
T ss_pred             eEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCE------EEeeCCCcc
Confidence            99888876654322225667788776  333442111 23456788888      899888853

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.27  E-value=1.1e-05  Score=79.25  Aligned_cols=129  Identities=15%  Similarity=0.168  Sum_probs=71.2

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      |.+ ++|++|+|++|.+++.....+. .+++|+.|+|   .++.-.-.. ..++++|++|+|+++. ++.-.-. .-.++
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l  159 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEIGAFN-GLANLNTLELFDNRLTTIPNGA-FVYLSKLKELWLRNNP-IESIPSY-AFNRI  159 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECGGGGT-TCSSCCEEECCSSCCSSCCTTT-SCSCSSCCEEECCSCC-CCEECTT-TTTTC
T ss_pred             hhCCCCCCEEECCCCcCCccChhhcc-CCccCCEEECCCCcCCeeCHhH-hhccccCceeeCCCCc-ccccCHH-HhhhC
Confidence            444 6777777777766544333333 3777777777   444211111 2357778888887764 2211001 12347


Q ss_pred             CCCcEeeCCCccccch-h-hhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          187 PKLNDVEGDSWEELVN-T-DIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       187 p~L~~L~ls~~~~td~-~-~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      ++|++|+++++..... . ....++++|+.|+  ..++++-  .. ...+++|+.      |++.+|.++
T Consensus       160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~------L~Ls~N~l~  220 (440)
T 3zyj_A          160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PN-LTPLIKLDE------LDLSGNHLS  220 (440)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CC-CTTCSSCCE------EECTTSCCC
T ss_pred             cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cc-cCCCcccCE------EECCCCccC
Confidence            7888887776432221 1 1124567788776  2233321  11 356778888      899888754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.26  E-value=1.1e-05  Score=81.88  Aligned_cols=31  Identities=13%  Similarity=0.162  Sum_probs=13.5

Q ss_pred             CccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571          115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDI  146 (354)
Q Consensus       115 ~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL  146 (354)
                      +++.|++++|.+++..-..+. .+++|+.|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l  285 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFH-CFSGLQELDL  285 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTT-TCTTCSEEEC
T ss_pred             ceeEEEeecCccCccCHHHhc-cccCCCEEec
Confidence            455555555543332222222 2455555555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.26  E-value=1.5e-05  Score=73.22  Aligned_cols=128  Identities=10%  Similarity=0.043  Sum_probs=75.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.++...-. +...+++|+.|+|   .++.-... ...++++|++|+++++. ++...-..+ ..+++|+
T Consensus        61 ~~L~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~  136 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPAG-IFKELKNLETLWVTDNKLQALPIG-VFDQLVNLAELRLDRNQ-LKSLPPRVF-DSLTKLT  136 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTT-TTSSCTTCCEEECCSSCCCCCCTT-TTTTCSSCCEEECCSSC-CCCCCTTTT-TTCTTCC
T ss_pred             CCCCEEECCCCccCeeChh-hhcCCCCCCEEECCCCcCCcCCHh-HcccccCCCEEECCCCc-cCeeCHHHh-CcCcCCC
Confidence            7888888888866532211 2234788888888   44432211 22467888888888764 221111112 3578888


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      +|++++..+.+... ....+++|+.|+  ...++...- .....+++|+.      |++.++.++
T Consensus       137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~------L~L~~N~l~  194 (270)
T 2o6q_A          137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKT------LKLDNNQLK  194 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCE------EECCSSCCS
T ss_pred             EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCE------EECCCCcCC
Confidence            88888876654322 124567788776  223433211 12346788888      888888743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.26  E-value=7.2e-05  Score=74.64  Aligned_cols=76  Identities=12%  Similarity=0.161  Sum_probs=43.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++..   + ..+++|+.|++   .++.-   .+ .+|++|++|++++|..+++..   + ..+++|+
T Consensus       106 ~~L~~L~L~~N~l~~l~---~-~~l~~L~~L~l~~N~l~~l---~l-~~l~~L~~L~l~~n~~~~~~~---~-~~l~~L~  173 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKLD---V-SQNPLLTYLNCARNTLTEI---DV-SHNTQLTELDCHLNKKITKLD---V-TPQTQLT  173 (457)
T ss_dssp             TTCCEEECCSSCCSCCC---C-TTCTTCCEEECTTSCCSCC---CC-TTCTTCCEEECTTCSCCCCCC---C-TTCTTCC
T ss_pred             CcCCEEECCCCcCCeec---C-CCCCcCCEEECCCCcccee---cc-ccCCcCCEEECCCCCcccccc---c-ccCCcCC
Confidence            67777777777555422   2 33677777777   44431   12 356777777777765444431   2 2356666


Q ss_pred             EeeCCCccccc
Q 018571          191 DVEGDSWEELV  201 (354)
Q Consensus       191 ~L~ls~~~~td  201 (354)
                      +|+++++.+++
T Consensus       174 ~L~ls~n~l~~  184 (457)
T 3bz5_A          174 TLDCSFNKITE  184 (457)
T ss_dssp             EEECCSSCCCC
T ss_pred             EEECCCCccce
Confidence            66666655443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.26  E-value=3e-05  Score=76.56  Aligned_cols=99  Identities=14%  Similarity=0.053  Sum_probs=43.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.+++..-..+. .+++|+.|+|   .++.-.-..+ .++++|++|+|+++.-.+- .-..+ ..+++|+
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~-~~~~~-~~l~~L~  131 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLGVF-TGLSNLTKLDISENKIVIL-LDYMF-QDLYNLK  131 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCTTSS-TTCTTCCEEECTTSCCCEE-CTTTT-TTCTTCC
T ss_pred             CCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCcCCccCcccc-cCCCCCCEEECCCCccccC-ChhHc-cccccCC
Confidence            5566666666655443222222 2566666666   3332111111 2456666666665532110 00011 2355666


Q ss_pred             EeeCCCccccchhh-hhccCccccccc
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV  216 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~  216 (354)
                      +|++++..+..... .-.++++|+.|+
T Consensus       132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A          132 SLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             EEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             EEECCCCccceeChhhccCCCCCCEEE
Confidence            66665544433211 112345555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.22  E-value=2.3e-05  Score=80.35  Aligned_cols=84  Identities=7%  Similarity=-0.034  Sum_probs=42.0

Q ss_pred             cCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcce
Q 018571          159 HCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRII  236 (354)
Q Consensus       159 ~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~  236 (354)
                      ++++|++|+|++|.- ++.....++ .+++|+.|+++++.++........+++|+.|+  ...++.  +..-...+++|+
T Consensus       252 ~l~~L~~L~Ls~N~l-~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~  327 (597)
T 3oja_B          252 NYPGLVEVDLSYNEL-EKIMYHPFV-KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLE  327 (597)
T ss_dssp             GCTTCSEEECCSSCC-CEEESGGGT-TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCS
T ss_pred             cCCCCCEEECCCCcc-CCCCHHHhc-CccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc--cCcccccCCCCC
Confidence            455566666655532 111111122 35566666665555444322234466777776  334441  221224567777


Q ss_pred             ecCCCCceeecCCCCC
Q 018571          237 VNPKPSPFGFRGFEVP  252 (354)
Q Consensus       237 ~~p~~~~L~l~gC~~s  252 (354)
                      .      |++.+|.++
T Consensus       328 ~------L~L~~N~l~  337 (597)
T 3oja_B          328 N------LYLDHNSIV  337 (597)
T ss_dssp             E------EECCSSCCC
T ss_pred             E------EECCCCCCC
Confidence            7      777777754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.21  E-value=5.4e-05  Score=74.72  Aligned_cols=127  Identities=12%  Similarity=-0.006  Sum_probs=61.3

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCC-----------------
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPR-----------------  173 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~-----------------  173 (354)
                      ++|++|+|++|.+++..-..+.. +++|+.|+|   .++...-..+ ..+++|++|++++|..                 
T Consensus       152 ~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  229 (477)
T 2id5_A          152 NSLEQLTLEKCNLTSIPTEALSH-LHGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL  229 (477)
T ss_dssp             TTCCEEEEESCCCSSCCHHHHTT-CTTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred             CCCCEEECCCCcCcccChhHhcc-cCCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccccEE
Confidence            67777777777655443333333 777777777   2221110111 2455555555554432                 


Q ss_pred             ------CcHHHHHHHHhcCCCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCce
Q 018571          174 ------SNHAARRCLGILKPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPF  244 (354)
Q Consensus       174 ------ItD~sL~~La~~cp~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L  244 (354)
                            ++......+ .++++|+.|++++..+++... .-..+++|+.|+  ..++++.... ....|++|+.      |
T Consensus       230 ~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~------L  301 (477)
T 2id5_A          230 SITHCNLTAVPYLAV-RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRV------L  301 (477)
T ss_dssp             EEESSCCCSCCHHHH-TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT-TBTTCTTCCE------E
T ss_pred             ECcCCcccccCHHHh-cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH-HhcCcccCCE------E
Confidence                  221111122 346777777777765543221 123445566555  2233321111 1235566666      6


Q ss_pred             eecCCC
Q 018571          245 GFRGFE  250 (354)
Q Consensus       245 ~l~gC~  250 (354)
                      ++.+|.
T Consensus       302 ~L~~N~  307 (477)
T 2id5_A          302 NVSGNQ  307 (477)
T ss_dssp             ECCSSC
T ss_pred             ECCCCc
Confidence            666665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.20  E-value=4.8e-05  Score=77.02  Aligned_cols=54  Identities=15%  Similarity=0.080  Sum_probs=22.3

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS  171 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC  171 (354)
                      .++++|++++|.+++..+   ...+++|+.|++   .+++.....+ .++++|++|+++++
T Consensus       331 ~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N  387 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRN  387 (562)
T ss_dssp             CCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSS
T ss_pred             CcceEEEccCCCcccccC---ccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCC
Confidence            445555555553332111   023455555555   3333111111 23455555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.16  E-value=1.3e-05  Score=78.91  Aligned_cols=123  Identities=11%  Similarity=0.017  Sum_probs=62.8

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE-------eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI-------RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL-------~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      ++|++|+|++|.++...-..+ ..+++|+.|+|       .+.+.    ...++++|++|++++|.-.+-   ..+ ..+
T Consensus       136 ~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~----~~~~l~~L~~L~L~~n~l~~~---~~~-~~l  206 (440)
T 3zyj_A          136 SKLKELWLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYISEG----AFEGLSNLRYLNLAMCNLREI---PNL-TPL  206 (440)
T ss_dssp             SSCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTT----TTTTCSSCCEEECTTSCCSSC---CCC-TTC
T ss_pred             ccCceeeCCCCcccccCHHHh-hhCcccCEeCCCCCCCcceeCcc----hhhcccccCeecCCCCcCccc---ccc-CCC
Confidence            555666666554442221112 22556666665       12211    113466666666666532111   111 346


Q ss_pred             CCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          187 PKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       187 p~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      ++|+.|++++..+++... ...++++|+.|+  ..++++.... ....+++|+.      |++.++.++
T Consensus       207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~------L~L~~N~l~  268 (440)
T 3zyj_A          207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLVE------INLAHNNLT  268 (440)
T ss_dssp             SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-SSTTCTTCCE------EECTTSCCC
T ss_pred             cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh-hhcCCCCCCE------EECCCCCCC
Confidence            677777777665554321 124566777776  3334432211 2346788888      999998843

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.13  E-value=3.9e-05  Score=78.64  Aligned_cols=122  Identities=13%  Similarity=0.058  Sum_probs=77.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++|.+++.  ..+ ..+++|+.|+|   .++......+ .++++|++|+|++|.-.+   +......+|.|+
T Consensus       232 ~~L~~L~L~~n~l~~~--~~l-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~L~  304 (597)
T 3oja_B          232 VELTILKLQHNNLTDT--AWL-LNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVA---LNLYGQPIPTLK  304 (597)
T ss_dssp             SCCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTTSCCCE---EECSSSCCTTCC
T ss_pred             CCCCEEECCCCCCCCC--hhh-ccCCCCCEEECCCCccCCCCHHHh-cCccCCCEEECCCCCCCC---CCcccccCCCCc
Confidence            4677888888876653  233 34899999999   4443222223 368899999999875332   112224578999


Q ss_pred             EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      .|+++++.++........+++|+.|+  ...++...    ...++.|+.      |++.|+++.
T Consensus       305 ~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~------L~l~~N~~~  358 (597)
T 3oja_B          305 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKN------LTLSHNDWD  358 (597)
T ss_dssp             EEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSE------EECCSSCEE
T ss_pred             EEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCE------EEeeCCCCC
Confidence            99998887664322224567788877  33344322    456788888      888888843

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.13  E-value=1.7e-05  Score=78.28  Aligned_cols=59  Identities=10%  Similarity=-0.031  Sum_probs=28.4

Q ss_pred             CCCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          186 KPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       186 cp~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +++|+.|++++..+++... .-.++++|+.|+  ..+++..... ....+++|+.      |++.++.+
T Consensus       217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~------L~L~~N~l  278 (452)
T 3zyi_A          217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASLVE------LNLAHNNL  278 (452)
T ss_dssp             CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCE------EECCSSCC
T ss_pred             cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH-HhcCCCCCCE------EECCCCcC
Confidence            4455555555544433211 123455666665  2233322111 1245677777      77777764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.10  E-value=0.00018  Score=71.76  Aligned_cols=74  Identities=11%  Similarity=0.117  Sum_probs=35.0

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|++++..   + ..+++|++|++   .++.-.   + .++++|++|+++++. +++-   .+ ..+++|+
T Consensus        64 ~~L~~L~Ls~n~l~~~~---~-~~l~~L~~L~Ls~N~l~~~~---~-~~l~~L~~L~L~~N~-l~~l---~~-~~l~~L~  130 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLD---L-SQNTNLTYLACDSNKLTNLD---V-TPLTKLTYLNCDTNK-LTKL---DV-SQNPLLT  130 (457)
T ss_dssp             TTCSEEECCSSCCSCCC---C-TTCTTCSEEECCSSCCSCCC---C-TTCTTCCEEECCSSC-CSCC---CC-TTCTTCC
T ss_pred             CCCCEEEccCCcCCeEc---c-ccCCCCCEEECcCCCCceee---c-CCCCcCCEEECCCCc-CCee---cC-CCCCcCC
Confidence            55666666665444421   2 23556666666   333211   2 245566666666553 2221   11 2355555


Q ss_pred             EeeCCCcccc
Q 018571          191 DVEGDSWEEL  200 (354)
Q Consensus       191 ~L~ls~~~~t  200 (354)
                      +|+++++.++
T Consensus       131 ~L~l~~N~l~  140 (457)
T 3bz5_A          131 YLNCARNTLT  140 (457)
T ss_dssp             EEECTTSCCS
T ss_pred             EEECCCCccc
Confidence            5555554433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.08  E-value=0.00015  Score=73.31  Aligned_cols=127  Identities=15%  Similarity=0.027  Sum_probs=84.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHH-HHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAA-GVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~-gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L  189 (354)
                      ++|++|+|++|.+++.....+ ..+++|+.|+|   .++.- .+.....++++|++|+++++.-.+.. -......+++|
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~l~~L  430 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA-YDRTCAWAESI  430 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC-SSCCCCCCTTC
T ss_pred             CCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc-ChhhhcCcccC
Confidence            889999999998887444334 34899999999   56541 22233357899999999988632200 00123357899


Q ss_pred             cEeeCCCccccchhhhhccC-ccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          190 NDVEGDSWEELVNTDIGHGA-QSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       190 ~~L~ls~~~~td~~~i~~~~-~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      +.|+++++.+++..  ..+. ++|+.|+  ..+++  .+..-...+++|+.      +++.++.++
T Consensus       431 ~~L~l~~n~l~~~~--~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~------L~L~~N~l~  486 (562)
T 3a79_B          431 LVLNLSSNMLTGSV--FRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQE------LNVASNQLK  486 (562)
T ss_dssp             CEEECCSSCCCGGG--GSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSE------EECCSSCCC
T ss_pred             CEEECCCCCCCcch--hhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCE------EECCCCCCC
Confidence            99999988776432  2233 6888887  33555  22222237889999      999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.06  E-value=3.6e-05  Score=71.99  Aligned_cols=13  Identities=23%  Similarity=0.222  Sum_probs=6.1

Q ss_pred             cCCCCCEEEecCC
Q 018571          159 HCHSLETLRCGGS  171 (354)
Q Consensus       159 ~Cp~Le~L~L~gC  171 (354)
                      ++++|++|+|+++
T Consensus       122 ~l~~L~~L~L~~N  134 (290)
T 1p9a_G          122 GLGELQELYLKGN  134 (290)
T ss_dssp             TCTTCCEEECTTS
T ss_pred             CCCCCCEEECCCC
Confidence            3444445544444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.03  E-value=0.00025  Score=76.92  Aligned_cols=128  Identities=13%  Similarity=0.000  Sum_probs=79.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---e-ecH----HHHHHHH---hcCCCCCEEEecCCCCCcHHHHHHH
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---R-ITA----AGVSEFL---LHCHSLETLRCGGSPRSNHAARRCL  182 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~-ITd----~gl~~La---~~Cp~Le~L~L~gC~~ItD~sL~~L  182 (354)
                      ++|++|+|++|.++..--..+. .+++|+.|+|   . ++.    .++..+.   ..+++|++|+|++|.-..-.....+
T Consensus       491 ~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l  569 (876)
T 4ecn_A          491 KDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL  569 (876)
T ss_dssp             TTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred             CCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence            8899999999854432223333 4899999999   4 665    3344443   4567999999998753210001123


Q ss_pred             HhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCc-ceecCCCCceeecCCCCC
Q 018571          183 GILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPR-IIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       183 a~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~-L~~~p~~~~L~l~gC~~s  252 (354)
                      + ++++|+.|++++..++.-. .-..+++|+.|+  ...++  .+..-...+++ |+.      |++.+|.++
T Consensus       570 ~-~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~------L~Ls~N~L~  632 (876)
T 4ecn_A          570 Q-KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG------LGFSHNKLK  632 (876)
T ss_dssp             T-TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE------EECCSSCCC
T ss_pred             h-cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCE------EECcCCCCC
Confidence            3 5889999999887665322 224456777776  33344  22222456677 888      888888755

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.03  E-value=4.1e-05  Score=70.12  Aligned_cols=129  Identities=13%  Similarity=0.075  Sum_probs=55.6

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCC--cHHHHHHHHhcCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRS--NHAARRCLGILKPK  188 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~I--tD~sL~~La~~cp~  188 (354)
                      ++|++|++++|.++...-..+. .+++|+.|++   .+++.++.....++++|++|++++|.-.  ....+..+.. ++.
T Consensus       100 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~  177 (276)
T 2z62_A          100 SSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPL  177 (276)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT-CTT
T ss_pred             ccccEEECCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh-ccc
Confidence            5566666665543322111122 2556666665   3333222222234566666666655311  1122222221 233


Q ss_pred             Cc-EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          189 LN-DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       189 L~-~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      |. +|++++..+...........+|+.|+  ...++... ..+...+++|+.      +++.+.++
T Consensus       178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~------L~l~~N~~  236 (276)
T 2z62_A          178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP-DGIFDRLTSLQK------IWLHTNPW  236 (276)
T ss_dssp             CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC-TTTTTTCCSCCE------EECCSSCB
T ss_pred             cceeeecCCCcccccCccccCCCcccEEECCCCceeecC-HhHhcccccccE------EEccCCcc
Confidence            32 45555544433221112223566665  22343211 122345677777      77777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.99  E-value=0.00013  Score=75.12  Aligned_cols=121  Identities=12%  Similarity=0.142  Sum_probs=70.7

Q ss_pred             HHHhhcCCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHh
Q 018571          108 IMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGI  184 (354)
Q Consensus       108 L~~la~~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~  184 (354)
                      +..+....|+.|+|++|+++.  +..+ ..+++|+.|+|   .|+  .+-.-..++++|++|+|+++. ++.  +..++ 
T Consensus       435 i~~l~~~~L~~L~Ls~n~l~~--lp~~-~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~l~-  505 (567)
T 1dce_A          435 VLKMEYADVRVLHLAHKDLTV--LCHL-EQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNA-LEN--VDGVA-  505 (567)
T ss_dssp             HHHHHHTTCSEEECTTSCCSS--CCCG-GGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCC--CGGGT-
T ss_pred             ccccCccCceEEEecCCCCCC--CcCc-cccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCC-CCC--CcccC-
Confidence            333333578889999886664  2233 34788888888   554  221223468889999988774 332  22333 


Q ss_pred             cCCCCcEeeCCCccccchh--hhhccCccccccc--cCCCCHH--HHHHHHhcCCccee
Q 018571          185 LKPKLNDVEGDSWEELVNT--DIGHGAQSLRWFV--WPNIDKD--SIEMMSTECPRIIV  237 (354)
Q Consensus       185 ~cp~L~~L~ls~~~~td~~--~i~~~~~~L~~L~--C~~ITD~--~l~~L~~~Cp~L~~  237 (354)
                      ++++|+.|++++..+++..  ..-..+++|+.|+  ...++..  .+..+...+|+|++
T Consensus       506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            4788888888877665442  1123456666665  2223221  23344555666666

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=96.97  E-value=6.8e-05  Score=73.93  Aligned_cols=124  Identities=13%  Similarity=0.015  Sum_probs=56.0

Q ss_pred             CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571          114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L  189 (354)
                      ++|+.|+|++| .++......+ ..+++|+.|+|   .+++  +..+ ..+++|++|+|+++.- ++..-..+ .++++|
T Consensus       171 ~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l-~~~~~~~~-~~l~~L  244 (452)
T 3zyi_A          171 PSLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMCNIKD--MPNL-TPLVGLEELEMSGNHF-PEIRPGSF-HGLSSL  244 (452)
T ss_dssp             TTCCEEECCCCTTCCEECTTTT-TTCTTCCEEECTTSCCSS--CCCC-TTCTTCCEEECTTSCC-SEECGGGG-TTCTTC
T ss_pred             CcccEEeCCCCCCccccChhhc-cCCCCCCEEECCCCcccc--cccc-cccccccEEECcCCcC-cccCcccc-cCccCC
Confidence            45555555554 3332211112 22555666665   2321  1112 2456666666666532 21111112 246677


Q ss_pred             cEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          190 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       190 ~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      +.|++++..+.+... .-.++++|+.|+  ..+++.-. ..+...+++|+.      +++.++|
T Consensus       245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~------L~L~~Np  301 (452)
T 3zyi_A          245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVE------LHLHHNP  301 (452)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCE------EECCSSC
T ss_pred             CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC-hHHhccccCCCE------EEccCCC
Confidence            777776665543221 123455666665  22333111 112245666666      6776666

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.93  E-value=2.4e-05  Score=70.25  Aligned_cols=126  Identities=10%  Similarity=-0.043  Sum_probs=81.7

Q ss_pred             CCccEEEeec-CCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCC---EEEecCCCCCcHHHHHHHHhcC
Q 018571          114 SSWEILDISG-SDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLE---TLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       114 ~~L~~LdLs~-C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le---~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      ++|++|+|++ +.++...-..+ ..|++|+.|++   .++.  +.. ..++++|+   +|+++++..++.-.-..+ ..+
T Consensus        80 ~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l  154 (239)
T 2xwt_C           80 SKVTHIEIRNTRNLTYIDPDAL-KELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-QGL  154 (239)
T ss_dssp             TTCCEEEEEEETTCCEECTTSE-ECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-TTT
T ss_pred             cCCcEEECCCCCCeeEcCHHHh-CCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccc-cch
Confidence            8999999999 47774332222 34899999999   4443  222 34788898   999999855554221222 358


Q ss_pred             CCCc-EeeCCCccccchhhh-hccCccccccc---cCCCCHHHHHHHHhcC-CcceecCCCCceeecCCCCC
Q 018571          187 PKLN-DVEGDSWEELVNTDI-GHGAQSLRWFV---WPNIDKDSIEMMSTEC-PRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       187 p~L~-~L~ls~~~~td~~~i-~~~~~~L~~L~---C~~ITD~~l~~L~~~C-p~L~~~p~~~~L~l~gC~~s  252 (354)
                      ++|+ .|++++..+...... ... .+|+.|+   +.+++.-.- .....+ ++|+.      +++.++.++
T Consensus       155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~------L~l~~N~l~  218 (239)
T 2xwt_C          155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSL------LDVSQTSVT  218 (239)
T ss_dssp             BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSE------EECTTCCCC
T ss_pred             hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcE------EECCCCccc
Confidence            9999 999988766542221 222 6788877   434653221 223456 88999      999998853

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=96.88  E-value=7.8e-05  Score=77.26  Aligned_cols=89  Identities=6%  Similarity=-0.066  Sum_probs=48.1

Q ss_pred             hhc-CCccEEEeecCCCCHH-----------H-----HH-HHH-HhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEe
Q 018571          111 LAD-SSWEILDISGSDVSDF-----------G-----LV-KVA-QMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRC  168 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~-----------g-----L~-~la-~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L  168 (354)
                      +.. ++|++|+|++|.++..           +     +- .+. ..+++|+.|+|   .++..--..+ .++++|++|++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L  280 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINV  280 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEEC
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEEC
Confidence            444 7888888888877762           0     11 111 14778888888   2221100112 35677777777


Q ss_pred             cCCCCCcH-HHHHHHHh-----cCCCCcEeeCCCcccc
Q 018571          169 GGSPRSNH-AARRCLGI-----LKPKLNDVEGDSWEEL  200 (354)
Q Consensus       169 ~gC~~ItD-~sL~~La~-----~cp~L~~L~ls~~~~t  200 (354)
                      ++|..++. ..-..++.     .+++|++|+++++..+
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            77664554 22222322     2466666666665444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=96.78  E-value=0.00017  Score=67.28  Aligned_cols=129  Identities=9%  Similarity=0.004  Sum_probs=76.7

Q ss_pred             Hhhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhc
Q 018571          110 SLAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL  185 (354)
Q Consensus       110 ~la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~  185 (354)
                      .+.. ++|+.|+|+++.++.....   ..+++|+.|+|   .++  .+.....++++|++|+++++. ++.-.-..+ ..
T Consensus        50 ~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~-~~  122 (290)
T 1p9a_G           50 TLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNR-LTSLPLGAL-RG  122 (290)
T ss_dssp             GGTTCTTCCEEECTTSCCCEEECC---SCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSC-CCCCCSSTT-TT
T ss_pred             HhhcCCCCCEEECCCCccCcccCC---CCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCc-CcccCHHHH-cC
Confidence            3444 7888888888866543221   35788888888   444  122223567888888888763 221100112 34


Q ss_pred             CCCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          186 KPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       186 cp~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      +++|++|++++..+..... +...+++|+.|+  ..+++.-. ..+...+++|+.      |++.++.++
T Consensus       123 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~------L~L~~N~l~  185 (290)
T 1p9a_G          123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDT------LLLQENSLY  185 (290)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCE------EECCSSCCC
T ss_pred             CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC-HHHhcCcCCCCE------EECCCCcCC
Confidence            7888888888776553221 124567788876  33444211 123356788888      999888853

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.76  E-value=4.3e-05  Score=73.41  Aligned_cols=99  Identities=11%  Similarity=0.001  Sum_probs=45.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++|+|+...-..+. .+++|+.|+|   .|+.-.-. ...++++|++|+|+++. ++...-..+ ..+++|+
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~-i~~~~~~~~-~~l~~L~  139 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNH-IVVVDRNAF-EDMAQLQ  139 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSC-CCEECTTTT-TTCTTCC
T ss_pred             cccCEEECCCCcCCccChhhcc-CCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCc-ccEECHHHh-CCcccCC
Confidence            5666666666655432222222 3666666666   22211000 11356666666666653 221100111 2356666


Q ss_pred             EeeCCCccccchh--hhh--ccCccccccc
Q 018571          191 DVEGDSWEELVNT--DIG--HGAQSLRWFV  216 (354)
Q Consensus       191 ~L~ls~~~~td~~--~i~--~~~~~L~~L~  216 (354)
                      +|++++..++...  .+.  ..+++|+.|+
T Consensus       140 ~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~  169 (361)
T 2xot_A          140 KLYLSQNQISRFPVELIKDGNKLPKLMLLD  169 (361)
T ss_dssp             EEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred             EEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence            6666665544321  111  3355566655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.73  E-value=8.3e-05  Score=70.02  Aligned_cols=15  Identities=7%  Similarity=-0.037  Sum_probs=7.9

Q ss_pred             hcCCcceecCCCCceeecCCC
Q 018571          230 TECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       230 ~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      ..+++|+.      +++.++.
T Consensus       261 ~~l~~L~~------L~l~~N~  275 (332)
T 2ft3_A          261 PDLKLLQV------VYLHTNN  275 (332)
T ss_dssp             GGCTTCCE------EECCSSC
T ss_pred             hcCccCCE------EECCCCC
Confidence            34555555      5555555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=96.71  E-value=4.8e-05  Score=71.63  Aligned_cols=83  Identities=13%  Similarity=0.076  Sum_probs=37.9

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.++...-..+. .+++|++|+|   .++...-..+ .++++|++|+++++. +++..-..++...+.|+
T Consensus       101 ~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~  177 (313)
T 1ogq_A          101 TQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGG-GCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSC-CEEECCGGGGCCCTTCC
T ss_pred             CCCCEEECcCCeeCCcCCHHHh-CCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCc
Confidence            5666666666654422212222 2666666666   3332111112 246666666666653 22111112232222666


Q ss_pred             EeeCCCccc
Q 018571          191 DVEGDSWEE  199 (354)
Q Consensus       191 ~L~ls~~~~  199 (354)
                      +|++++...
T Consensus       178 ~L~L~~N~l  186 (313)
T 1ogq_A          178 SMTISRNRL  186 (313)
T ss_dssp             EEECCSSEE
T ss_pred             EEECcCCee
Confidence            666655443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.65  E-value=0.00011  Score=64.44  Aligned_cols=119  Identities=13%  Similarity=0.044  Sum_probs=74.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|+++++++..-. ....+++|+.|+|   .++.-.- ....++++|++|+++++. ++...- ..-.++++|+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~  127 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKELALNTNQ-LQSLPD-GVFDKLTQLK  127 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred             ccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEEEcCCCc-CcccCH-hHhccCCcCC
Confidence            8899999999876633222 2234899999999   4542111 112468999999999874 332111 1124589999


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      +|++++..+++... ....+++|+.|+  ...+        ...||.|+.      +++.++.
T Consensus       128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~------L~~~~n~  176 (208)
T 2o6s_A          128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRY------LSEWINK  176 (208)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHH------HHHHHHH
T ss_pred             EEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHH------HHHHHHh
Confidence            99998876654322 124567888876  1112        235777777      7666555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.63  E-value=0.00011  Score=65.71  Aligned_cols=128  Identities=9%  Similarity=0.008  Sum_probs=66.9

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      +.++.|+|++++++...-..+...+++|+.|+|   .|+.-.-..+ .++++|++|+|+++.- +...-..+ .++++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l-~~~~~~~~-~~l~~L~  108 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLTSNRL-ENVQHKMF-KGLESLK  108 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCC-CCCCGGGG-TTCSSCC
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-CCCCCCCEEECCCCcc-CccCHhHh-cCCcCCC
Confidence            456777777776554321112234777777777   3332111112 3577777777777642 21111112 3467777


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      +|++++..++.... ...++++|+.|+  ..+++.-.- .....+++|+.      +++.+.++
T Consensus       109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~L~~N~l  165 (220)
T 2v70_A          109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLST------LNLLANPF  165 (220)
T ss_dssp             EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCE------EECCSCCE
T ss_pred             EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCE------EEecCcCC
Confidence            77777766554311 123456676665  223332111 12245677777      88877774

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=96.63  E-value=0.00022  Score=73.82  Aligned_cols=126  Identities=8%  Similarity=-0.059  Sum_probs=72.0

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---e-ecH----HHHHHHH--hcCCCCCEEEecCCCCCcHHHHHH--
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---R-ITA----AGVSEFL--LHCHSLETLRCGGSPRSNHAARRC--  181 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~-ITd----~gl~~La--~~Cp~Le~L~L~gC~~ItD~sL~~--  181 (354)
                      ++|++|+|++|.++..--..+. .+++|+.|+|   . ++.    .++..+.  ..|++|++|++++|.- +  .+-.  
T Consensus       249 ~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~--~ip~~~  324 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-K--TFPVET  324 (636)
T ss_dssp             TTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-S--SCCCHH
T ss_pred             CCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-C--ccCchh
Confidence            7899999999854432222333 3889999999   4 776    2233321  2468899999998753 2  1211  


Q ss_pred             HHhcCCCCcEeeCCCcccc-chhhhhccCccccccc--cCCCCHHHHHHHHhcCCc-ceecCCCCceeecCCCCC
Q 018571          182 LGILKPKLNDVEGDSWEEL-VNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPR-IIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       182 La~~cp~L~~L~ls~~~~t-d~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~-L~~~p~~~~L~l~gC~~s  252 (354)
                      .-.++++|++|+++++... ... .-..+++|+.|+  ...++  .+..-...+++ |+.      |++.++.++
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~------L~Ls~N~l~  390 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVEN------LSFAHNKLK  390 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCE------EECCSSCCS
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcE------EEccCCcCc
Confidence            2235788999988877655 221 123345555555  22233  11111344555 666      666666643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.61  E-value=0.00015  Score=68.34  Aligned_cols=124  Identities=10%  Similarity=-0.021  Sum_probs=67.2

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.. ++|++|+|++|+++...-..+. .+++|++|+|   .++.-.  .  ...++|++|+++++. ++...- ..-.++
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~--~--~~~~~L~~L~l~~n~-i~~~~~-~~~~~l  146 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLVEIP--P--NLPSSLVELRIHDNR-IRKVPK-GVFSGL  146 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCCSCC--S--SCCTTCCEEECCSSC-CCCCCS-GGGSSC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCCccC--c--cccccCCEEECCCCc-cCccCH-hHhCCC
Confidence            444 6777777777766644333333 3777777777   333100  0  112678888887763 221100 112357


Q ss_pred             CCCcEeeCCCccccchhhhh---ccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          187 PKLNDVEGDSWEELVNTDIG---HGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       187 p~L~~L~ls~~~~td~~~i~---~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      ++|++|++++....+.+...   ..+ +|+.|+  ...+++-.    ....++|+.      +++.++.++
T Consensus       147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~----~~~~~~L~~------L~l~~n~i~  206 (332)
T 2ft3_A          147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP----KDLPETLNE------LHLDHNKIQ  206 (332)
T ss_dssp             SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC----SSSCSSCSC------CBCCSSCCC
T ss_pred             ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC----ccccCCCCE------EECCCCcCC
Confidence            88888888877665433321   122 666666  22333200    012257777      888888754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.53  E-value=0.00016  Score=64.72  Aligned_cols=127  Identities=10%  Similarity=-0.024  Sum_probs=64.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++++.|+|++++|+...-..+ ..+++|+.|+|   .|+.-.-..+ .++++|++|+|+++. ++.-. ..+-..+++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L~  107 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNK-ITELP-KSLFEGLFSLQ  107 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred             cCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCc-CCccC-HhHccCCCCCC
Confidence            467777777776553222222 23677777777   3332111112 356777777777663 22100 01123467777


Q ss_pred             EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      .|++++..+..... .-..+++|+.|+  ..+++...- .....+++|+.      +++.+.++
T Consensus       108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~L~~N~~  164 (220)
T 2v9t_B          108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQT------MHLAQNPF  164 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCE------EECCSSCE
T ss_pred             EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCE------EEeCCCCc
Confidence            77777665544211 123456666665  222322111 12235677777      77777663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.51  E-value=0.00025  Score=71.30  Aligned_cols=100  Identities=11%  Similarity=0.022  Sum_probs=65.2

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCC--CcHHHHHHHHh
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPR--SNHAARRCLGI  184 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~--ItD~sL~~La~  184 (354)
                      |.. ++|++|+|++|+|+...-.. ...+++|++|+|   +|+.-.-.. ..++++|++|++++|.-  +.+.   .+ .
T Consensus        72 f~~l~~L~~L~Ls~N~i~~i~~~~-f~~L~~L~~L~Ls~N~l~~l~~~~-f~~L~~L~~L~Ls~N~l~~l~~~---~~-~  145 (635)
T 4g8a_A           72 FFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENF---PI-G  145 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECGGG-GTTCTTCCEEECTTSCCCCSTTC---CC-T
T ss_pred             HhCCCCCCEEECCCCcCCCcChhH-hcCCCCCCEEEccCCcCCCCCHHH-hcCCCCCCEEECCCCcCCCCChh---hh-h
Confidence            455 89999999999766322112 245899999999   444211112 24789999999998842  2221   12 3


Q ss_pred             cCCCCcEeeCCCccccch--hhhhccCccccccc
Q 018571          185 LKPKLNDVEGDSWEELVN--TDIGHGAQSLRWFV  216 (354)
Q Consensus       185 ~cp~L~~L~ls~~~~td~--~~i~~~~~~L~~L~  216 (354)
                      ++++|++|++++..+...  ......+++|++|+
T Consensus       146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  179 (635)
T 4g8a_A          146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  179 (635)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             cCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence            589999999988766542  22335567888887

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=96.37  E-value=0.00011  Score=69.25  Aligned_cols=130  Identities=13%  Similarity=0.047  Sum_probs=70.0

Q ss_pred             Hhhc-CCccEEEeec-CCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHh
Q 018571          110 SLAD-SSWEILDISG-SDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGI  184 (354)
Q Consensus       110 ~la~-~~L~~LdLs~-C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~  184 (354)
                      .+.. ++|++|+|++ +.+++..-..+. .+++|+.|+|   .++...-..+ .++++|++|+++++.- +...-..+ .
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l-~~~~p~~~-~  146 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNAL-SGTLPPSI-S  146 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECCSSEE-ESCCCGGG-G
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCCCCcc-CCcCChHH-h
Confidence            4444 7888888885 454432222233 3788888888   3331111122 3678888888887742 21101122 3


Q ss_pred             cCCCCcEeeCCCccccch--hhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571          185 LKPKLNDVEGDSWEELVN--TDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV  251 (354)
Q Consensus       185 ~cp~L~~L~ls~~~~td~--~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~  251 (354)
                      .+++|++|++++..++..  ..++...++|+.|+  ...++...-..+ ..++ |+.      +++.+|.+
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~------L~Ls~N~l  209 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAF------VDLSRNML  209 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSE------EECCSSEE
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH-hCCc-ccE------EECcCCcc
Confidence            478888888887766532  22233223777776  222331111112 2333 788      88888874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.34  E-value=0.00075  Score=72.02  Aligned_cols=83  Identities=7%  Similarity=0.050  Sum_probs=48.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++|+++...-..+ ..+++|+.|+|   .++...-..+ .++++|++|+++++. ++...-..+ .++++|+
T Consensus       290 ~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~-i~~~~~~~~-~~l~~L~  365 (844)
T 3j0a_A          290 KDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAYIDLQKNH-IAIIQDQTF-KFLEKLQ  365 (844)
T ss_dssp             CCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSCSC-SSCTTCCEEECCSCC-CCCCCSSCS-CSCCCCC
T ss_pred             CCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHHHh-cCCCCCCEEECCCCC-CCccChhhh-cCCCCCC
Confidence            788999999887664432233 34888999888   4432111122 357778888887763 221110111 3467777


Q ss_pred             EeeCCCcccc
Q 018571          191 DVEGDSWEEL  200 (354)
Q Consensus       191 ~L~ls~~~~t  200 (354)
                      .|++++..++
T Consensus       366 ~L~Ls~N~l~  375 (844)
T 3j0a_A          366 TLDLRDNALT  375 (844)
T ss_dssp             EEEEETCCSC
T ss_pred             EEECCCCCCC
Confidence            7777665443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.29  E-value=0.00067  Score=70.74  Aligned_cols=76  Identities=11%  Similarity=0.041  Sum_probs=40.3

Q ss_pred             CCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCccee
Q 018571          160 CHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIV  237 (354)
Q Consensus       160 Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~  237 (354)
                      .++|++|++++|. ++.     +...+++|+.|+++++.++.-.   ..+++|+.|+  ..+++  .+......+++|+.
T Consensus       220 ~~~L~~L~Ls~N~-L~~-----lp~~l~~L~~L~Ls~N~L~~lp---~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~  288 (622)
T 3g06_A          220 PSGLKELIVSGNR-LTS-----LPVLPSELKELMVSGNRLTSLP---MLPSGLLSLSVYRNQLT--RLPESLIHLSSETT  288 (622)
T ss_dssp             CTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCC--SCCGGGGGSCTTCE
T ss_pred             CCCCCEEEccCCc-cCc-----CCCCCCcCcEEECCCCCCCcCC---cccccCcEEeCCCCCCC--cCCHHHhhccccCE
Confidence            3556666666552 222     2244566666666665444211   2455666665  33444  22222456777777


Q ss_pred             cCCCCceeecCCCCC
Q 018571          238 NPKPSPFGFRGFEVP  252 (354)
Q Consensus       238 ~p~~~~L~l~gC~~s  252 (354)
                            +++.+++++
T Consensus       289 ------L~L~~N~l~  297 (622)
T 3g06_A          289 ------VNLEGNPLS  297 (622)
T ss_dssp             ------EECCSCCCC
T ss_pred             ------EEecCCCCC
Confidence                  777777754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.13  E-value=0.0066  Score=63.20  Aligned_cols=53  Identities=6%  Similarity=-0.048  Sum_probs=26.9

Q ss_pred             CCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          186 KPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       186 cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      +++|++|+++++.++..   .....+|+.|+  ..+++.     +...+++|+.      |++.+|.++
T Consensus       140 l~~L~~L~Ls~N~l~~l---~~~~~~L~~L~L~~N~l~~-----l~~~~~~L~~------L~Ls~N~l~  194 (622)
T 3g06_A          140 PPGLQELSVSDNQLASL---PALPSELCKLWAYNNQLTS-----LPMLPSGLQE------LSVSDNQLA  194 (622)
T ss_dssp             CTTCCEEECCSSCCSCC---CCCCTTCCEEECCSSCCSC-----CCCCCTTCCE------EECCSSCCS
T ss_pred             CCCCCEEECcCCcCCCc---CCccCCCCEEECCCCCCCC-----CcccCCCCcE------EECCCCCCC
Confidence            35555555555544321   12234555554  222332     1145677777      888888753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.04  E-value=0.0041  Score=58.34  Aligned_cols=79  Identities=16%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             CCccEEEeecCCCCHH-HHHHHHHhCCCCcEEEE---eecHH-HHHHHHhcCCCCCEEEecCCCCCc-----HHHHHHHH
Q 018571          114 SSWEILDISGSDVSDF-GLVKVAQMCKSLKAVDI---RITAA-GVSEFLLHCHSLETLRCGGSPRSN-----HAARRCLG  183 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~-gL~~la~~C~~L~~LdL---~ITd~-gl~~La~~Cp~Le~L~L~gC~~It-----D~sL~~La  183 (354)
                      ++|++|+|++++|++- ++..+...+++|+.|+|   .|++- .+..+. .. +|++|+|.+.+-.+     ..-...+-
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHHHHHH
Confidence            7788888888866652 34445556888888888   55543 233332 23 78888888776432     13334555


Q ss_pred             hcCCCCcEeeC
Q 018571          184 ILKPKLNDVEG  194 (354)
Q Consensus       184 ~~cp~L~~L~l  194 (354)
                      ..+|+|+.||-
T Consensus       248 ~~~P~L~~LDg  258 (267)
T 3rw6_A          248 ERFPKLLRLDG  258 (267)
T ss_dssp             HHCTTCCEESS
T ss_pred             HHCcccCeECC
Confidence            66788887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.02  E-value=0.00031  Score=67.39  Aligned_cols=32  Identities=13%  Similarity=0.199  Sum_probs=14.5

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI  146 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL  146 (354)
                      ++|++|+|++++++...-..+ ..+++|+.|+|
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L  119 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLF-SDLQALEVLLL  119 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTT-TTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCcCCHHHh-CCCcCCCEEEC
Confidence            455555555554432211111 22555555555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=95.94  E-value=0.00051  Score=61.36  Aligned_cols=99  Identities=11%  Similarity=0.027  Sum_probs=63.6

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++++|+...-..+. .+++|+.|+|   .++...-..+ .++++|++|+|+++.- +...-..+ ..+++|+
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l-~~~~~~~~-~~l~~L~  132 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSNRLENVQHKMF-KGLESLKTLMLRSNRI-TCVGNDSF-IGLSSVR  132 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCGGGG-TTCSSCCEEECTTSCC-CCBCTTSS-TTCTTCS
T ss_pred             CCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCCccCccCHhHh-cCCcCCCEEECCCCcC-CeECHhHc-CCCccCC
Confidence            8899999999977653322333 4899999999   4443221122 4789999999998752 21111122 2578999


Q ss_pred             EeeCCCccccchh-hhhccCccccccc
Q 018571          191 DVEGDSWEELVNT-DIGHGAQSLRWFV  216 (354)
Q Consensus       191 ~L~ls~~~~td~~-~i~~~~~~L~~L~  216 (354)
                      .|++++..++... ..-..+++|+.|+
T Consensus       133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A          133 LLSLYDNQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             EEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCEECHHHhcCCCCCCEEE
Confidence            9999887766532 1124567777775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=95.77  E-value=0.0044  Score=64.01  Aligned_cols=13  Identities=8%  Similarity=-0.023  Sum_probs=6.0

Q ss_pred             CCCCcEeeCCCcc
Q 018571          186 KPKLNDVEGDSWE  198 (354)
Q Consensus       186 cp~L~~L~ls~~~  198 (354)
                      +++|++|+++++.
T Consensus       159 l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          159 PTSLEVLSVRNNQ  171 (571)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCcCEEECCCCC
Confidence            3444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=95.48  E-value=0.00088  Score=57.17  Aligned_cols=82  Identities=11%  Similarity=0.021  Sum_probs=38.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      +++++|+|++++++...-..+ ..+++|+.|+|   .++.-.- ....++++|++|+++++. ++...- ..-..+++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~  103 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENK-LQSLPN-GVFDKLTQLK  103 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred             CCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCC-ccccCH-HHhhCCcccC
Confidence            566777777765542211111 23566666666   3331110 111356666666666653 221100 0112356666


Q ss_pred             EeeCCCccc
Q 018571          191 DVEGDSWEE  199 (354)
Q Consensus       191 ~L~ls~~~~  199 (354)
                      +|++++..+
T Consensus       104 ~L~l~~N~l  112 (177)
T 2o6r_A          104 ELALDTNQL  112 (177)
T ss_dssp             EEECCSSCC
T ss_pred             EEECcCCcc
Confidence            666655443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=95.36  E-value=0.00097  Score=59.52  Aligned_cols=99  Identities=13%  Similarity=0.047  Sum_probs=62.8

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++|+|+...-..+. .+++|+.|+|   .|+.-. ..+..++++|++|+|+++. ++...-..+ ..+++|+
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~  131 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGNKITELP-KSLFEGLFSLQLLLLNANK-INCLRVDAF-QDLHNLN  131 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCC
T ss_pred             CCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCCcCCccC-HhHccCCCCCCEEECCCCC-CCEeCHHHc-CCCCCCC
Confidence            7899999999977643323333 4899999999   444211 1122468999999999874 322111122 2478999


Q ss_pred             EeeCCCccccchhh-hhccCccccccc
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV  216 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~  216 (354)
                      +|++++..++.... .-..+++|+.|+
T Consensus       132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~  158 (220)
T 2v9t_B          132 LLSLYDNKLQTIAKGTFSPLRAIQTMH  158 (220)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCEECHHHHhCCCCCCEEE
Confidence            99998877654322 123456777775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.29  E-value=0.0044  Score=63.66  Aligned_cols=98  Identities=14%  Similarity=0.070  Sum_probs=66.6

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHH-HHHHHhc
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAA-RRCLGIL  185 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~s-L~~La~~  185 (354)
                      +.. ++|+.|+|++|.++  .+-.-...+++|+.|+|   .|+.  +..+ .++++|++|+|+++. +++.. ...++ .
T Consensus       459 ~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp~l-~~l~~L~~L~Ls~N~-l~~~~~p~~l~-~  531 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN--VDGV-ANLPRLQELLLCNNR-LQQSAAIQPLV-S  531 (567)
T ss_dssp             GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC--CGGG-TTCSSCCEEECCSSC-CCSSSTTGGGG-G
T ss_pred             ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC--Cccc-CCCCCCcEEECCCCC-CCCCCCcHHHh-c
Confidence            444 89999999999776  22122335999999999   5653  4434 479999999999874 33321 22344 5


Q ss_pred             CCCCcEeeCCCccccchh----hhhccCcccccc
Q 018571          186 KPKLNDVEGDSWEELVNT----DIGHGAQSLRWF  215 (354)
Q Consensus       186 cp~L~~L~ls~~~~td~~----~i~~~~~~L~~L  215 (354)
                      +++|+.|++++..+++..    .+...+++|+.|
T Consensus       532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            899999999988765431    123446677665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.22  E-value=0.045  Score=51.19  Aligned_cols=85  Identities=11%  Similarity=0.071  Sum_probs=49.2

Q ss_pred             HHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhhh--ccCccccccc------cCCCCH-
Q 018571          152 GVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIG--HGAQSLRWFV------WPNIDK-  222 (354)
Q Consensus       152 gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i~--~~~~~L~~L~------C~~ITD-  222 (354)
                      .+..+.+++|+|++|+|++..-.+=.++..+...+|+|+.|++++..+.+...+.  .++ +|+.|+      |..+.+ 
T Consensus       161 ~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~  239 (267)
T 3rw6_A          161 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQ  239 (267)
T ss_dssp             HHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSH
T ss_pred             HHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcc
Confidence            3444446677788888876542221223334446778888877776666543331  122 666665      333322 


Q ss_pred             -HHHHHHHhcCCccee
Q 018571          223 -DSIEMMSTECPRIIV  237 (354)
Q Consensus       223 -~~l~~L~~~Cp~L~~  237 (354)
                       .-...+...+|+|+.
T Consensus       240 ~~y~~~il~~~P~L~~  255 (267)
T 3rw6_A          240 STYISAIRERFPKLLR  255 (267)
T ss_dssp             HHHHHHHHHHCTTCCE
T ss_pred             hhHHHHHHHHCcccCe
Confidence             345677889999998

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=95.14  E-value=0.0019  Score=57.83  Aligned_cols=98  Identities=11%  Similarity=-0.044  Sum_probs=62.5

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|+++...-. +...+++|+.|+|   .|+.-.- ....++++|++|+|+++. ++.  +-.-..++++|+
T Consensus        64 ~~L~~L~L~~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~  138 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNK-LTE--LPRGIERLTHLT  138 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCS--CCTTGGGCTTCS
T ss_pred             cCCcEEECCCCCCCCcChh-hcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCc-ccc--cCcccccCCCCC
Confidence            8899999999966533222 2244899999999   4542111 122468999999999874 331  111125689999


Q ss_pred             EeeCCCccccchhh-hhccCccccccc
Q 018571          191 DVEGDSWEELVNTD-IGHGAQSLRWFV  216 (354)
Q Consensus       191 ~L~ls~~~~td~~~-i~~~~~~L~~L~  216 (354)
                      +|++++..+..... .-..+++|+.|+
T Consensus       139 ~L~L~~N~l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A          139 HLALDQNQLKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            99998876654321 124567777775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=95.09  E-value=0.003  Score=62.79  Aligned_cols=14  Identities=21%  Similarity=0.162  Sum_probs=7.2

Q ss_pred             CCCCcEeeCCCccc
Q 018571          186 KPKLNDVEGDSWEE  199 (354)
Q Consensus       186 cp~L~~L~ls~~~~  199 (354)
                      +++|++|+++++..
T Consensus       194 l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          194 LPFLTAIYADNNSL  207 (454)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcC
Confidence            55555555554433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=95.04  E-value=0.0021  Score=56.27  Aligned_cols=82  Identities=17%  Similarity=0.065  Sum_probs=48.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      +++++|+|+++.|+...  .....+++|+.|+|   .|+.-.-..+ .++++|++|+|+++. ++...-..+ ..+++|+
T Consensus        31 ~~l~~L~L~~n~i~~ip--~~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~~~f-~~l~~L~  105 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP--KELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNR-LRCIPPRTF-DGLKSLR  105 (193)
T ss_dssp             TTCCEEECCSSCCCSCC--GGGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCC
T ss_pred             CCCCEEECCCCcCchhH--HHhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCc-cCEeCHHHh-CCCCCCC
Confidence            57888888888665322  22344788888888   4442211122 367888888888764 222111112 2467888


Q ss_pred             EeeCCCcccc
Q 018571          191 DVEGDSWEEL  200 (354)
Q Consensus       191 ~L~ls~~~~t  200 (354)
                      +|++++..++
T Consensus       106 ~L~L~~N~l~  115 (193)
T 2wfh_A          106 LLSLHGNDIS  115 (193)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCCCC
Confidence            8888776554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=95.01  E-value=0.012  Score=58.44  Aligned_cols=14  Identities=21%  Similarity=0.157  Sum_probs=7.9

Q ss_pred             CCccEEEeecCCCC
Q 018571          114 SSWEILDISGSDVS  127 (354)
Q Consensus       114 ~~L~~LdLs~C~IT  127 (354)
                      ++|++|+++++.++
T Consensus        91 ~~L~~L~l~~n~l~  104 (454)
T 1jl5_A           91 PHLESLVASCNSLT  104 (454)
T ss_dssp             TTCSEEECCSSCCS
T ss_pred             CCCCEEEccCCcCC
Confidence            45666666665443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=94.99  E-value=0.0055  Score=63.28  Aligned_cols=112  Identities=13%  Similarity=0.040  Sum_probs=64.5

Q ss_pred             CccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcE
Q 018571          115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLND  191 (354)
Q Consensus       115 ~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~  191 (354)
                      +|++|+|++|+++.  +..   .+++|+.|+|   .|+.  +   ...+++|++|+|++|. ++.  +-.   ..++|+.
T Consensus       121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~--l---p~~l~~L~~L~Ls~N~-L~~--lp~---l~~~L~~  184 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM--L---PELPTSLEVLSVRNNQ-LTF--LPE---LPESLEA  184 (571)
T ss_dssp             TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC--C---CCCCTTCCEEECCSSC-CSC--CCC---CCTTCCE
T ss_pred             CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc--C---CCcCCCcCEEECCCCC-CCC--cch---hhCCCCE
Confidence            66666666664443  111   4677777777   4432  1   1256788888888874 222  111   2278999


Q ss_pred             eeCCCccccchhhhhccCccc-------cccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571          192 VEGDSWEELVNTDIGHGAQSL-------RWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR  253 (354)
Q Consensus       192 L~ls~~~~td~~~i~~~~~~L-------~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~  253 (354)
                      |++++..++....++.   +|       +.|+  ...|+.  +..-...+++|+.      |++.+++++.
T Consensus       185 L~Ls~N~L~~lp~~~~---~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~------L~L~~N~l~~  244 (571)
T 3cvr_A          185 LDVSTNLLESLPAVPV---RNHHSEETEIFFRCRENRITH--IPENILSLDPTCT------IILEDNPLSS  244 (571)
T ss_dssp             EECCSSCCSSCCCCC-----------CCEEEECCSSCCCC--CCGGGGGSCTTEE------EECCSSSCCH
T ss_pred             EECcCCCCCchhhHHH---hhhcccccceEEecCCCccee--cCHHHhcCCCCCE------EEeeCCcCCC
Confidence            9998876654222221   55       7766  334542  2222234888888      9999988543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.88  E-value=0.003  Score=66.75  Aligned_cols=101  Identities=12%  Similarity=-0.000  Sum_probs=58.6

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHH-HHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAAR-RCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL-~~La~~cp~L  189 (354)
                      +.|+.|+|++|.++.-. ..+. .+++|+.|+|   .|+  .|-.-..++++|++|+|+++. ++  .+ ..+ .++++|
T Consensus       224 ~~L~~L~Ls~n~l~~l~-~~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~-~~l~~L  295 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNIS-ANIF-KYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAEL-GSCFQL  295 (727)
T ss_dssp             CCCCEEECTTSCCSCCC-GGGG-GCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSG-GGGTTC
T ss_pred             CCCcEEECCCCCCCCCC-hhhc-CCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhh-cCCCCC
Confidence            77888888888544211 0122 4788888888   554  222212467888888888775 33  11 112 347888


Q ss_pred             cEeeCCCccccchhhhhccCccccccc--cCCCCH
Q 018571          190 NDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDK  222 (354)
Q Consensus       190 ~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD  222 (354)
                      ++|+++++.+......-..+++|+.|+  ...++.
T Consensus       296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            888887775542211124466777776  334553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.85  E-value=0.011  Score=62.45  Aligned_cols=103  Identities=12%  Similarity=0.043  Sum_probs=57.0

Q ss_pred             HhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHH-HHHHhcCCCCcEeeCCCccccchhhhhccCcc
Q 018571          136 QMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAAR-RCLGILKPKLNDVEGDSWEELVNTDIGHGAQS  211 (354)
Q Consensus       136 ~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL-~~La~~cp~L~~L~ls~~~~td~~~i~~~~~~  211 (354)
                      ..+++|+.|+|   .++.  |..-..++++|++|+|+++. ++  .+ ..+ .++++|+.|++++..++..-..-..+++
T Consensus       221 ~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNS-LT--ELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSC-CS--CCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             ccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCc-Cc--ccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            34677888887   3331  11111257788888888764 22  11 123 3577888888877765522111244567


Q ss_pred             ccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          212 LRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       212 L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      |+.|+  ...|+  .+..-...+++|+.      |++.+++++
T Consensus       295 L~~L~L~~N~l~--~lp~~~~~l~~L~~------L~L~~N~l~  329 (727)
T 4b8c_D          295 LKYFYFFDNMVT--TLPWEFGNLCNLQF------LGVEGNPLE  329 (727)
T ss_dssp             CSEEECCSSCCC--CCCSSTTSCTTCCC------EECTTSCCC
T ss_pred             CCEEECCCCCCC--ccChhhhcCCCccE------EeCCCCccC
Confidence            77776  22343  11111356777887      888888754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.78  E-value=0.01  Score=55.78  Aligned_cols=28  Identities=7%  Similarity=0.245  Sum_probs=21.5

Q ss_pred             cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          217 WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       217 C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      -..+.......+..+|++|+.      +++.++.
T Consensus       210 ~~~l~~~~~~~l~~~~~~L~~------l~L~~n~  237 (329)
T 3sb4_A          210 EGKLDNADFKLIRDYMPNLVS------LDISKTN  237 (329)
T ss_dssp             EECCCHHHHHHHHHHCTTCCE------EECTTBC
T ss_pred             eeeecHHHHHHHHHhcCCCeE------EECCCCC
Confidence            344677777888888999999      8887764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.22  E-value=0.0049  Score=57.97  Aligned_cols=115  Identities=14%  Similarity=0.074  Sum_probs=71.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC-CCCcHHHHHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC-~~ItD~sL~~La~~cp~L  189 (354)
                      .++..+.+.+ .+...++..+...|++|+.|+|   .|+.-+-.++ .+|++|++|++..- ..|.+.+    -.+|++|
T Consensus       202 ~~~~~l~~~~-~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF-~~~~~L~~l~l~~ni~~I~~~a----F~~~~~L  275 (329)
T 3sb4_A          202 RDINFLTIEG-KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF-AQKKYLLKIKLPHNLKTIGQRV----FSNCGRL  275 (329)
T ss_dssp             GGCSEEEEEE-CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT-TTCTTCCEEECCTTCCEECTTT----TTTCTTC
T ss_pred             cccceEEEee-eecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh-hCCCCCCEEECCcccceehHHH----hhCChhc
Confidence            6778888877 4777788888878999999998   2433222223 47899999998752 2222221    1358888


Q ss_pred             c-EeeCCCccccc--hhhhhccCcccccccc--CCCCHHHHHHHHhcCCccee
Q 018571          190 N-DVEGDSWEELV--NTDIGHGAQSLRWFVW--PNIDKDSIEMMSTECPRIIV  237 (354)
Q Consensus       190 ~-~L~ls~~~~td--~~~i~~~~~~L~~L~C--~~ITD~~l~~L~~~Cp~L~~  237 (354)
                      + .|++.. .++.  .+. -.+|++|+.+..  .+|+.-+-. .-.+|++|+.
T Consensus       276 ~~~l~l~~-~l~~I~~~a-F~~c~~L~~l~l~~n~i~~I~~~-aF~~~~~L~~  325 (329)
T 3sb4_A          276 AGTLELPA-SVTAIEFGA-FMGCDNLRYVLATGDKITTLGDE-LFGNGVPSKL  325 (329)
T ss_dssp             CEEEEECT-TCCEECTTT-TTTCTTEEEEEECSSCCCEECTT-TTCTTCCCCE
T ss_pred             cEEEEEcc-cceEEchhh-hhCCccCCEEEeCCCccCccchh-hhcCCcchhh
Confidence            8 888765 3332  222 356788888762  233332211 2357788776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=94.05  E-value=0.003  Score=53.76  Aligned_cols=83  Identities=7%  Similarity=-0.047  Sum_probs=54.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|.++...-..+ ..+++|+.|+|   .++.-.- ....++++|++|+++++. ++.-. ..+...+++|+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~  127 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVF-DKLTKLTILYLHENKLQSLPN-GVFDKLTQLKELALDTNQ-LKSVP-DGIFDRLTSLQ  127 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCC
T ss_pred             ccccEEECCCCcceEeChhHc-cCCCccCEEECCCCCccccCH-HHhhCCcccCEEECcCCc-ceEeC-HHHhcCCcccC
Confidence            889999999997663222222 35899999999   5552111 122468999999999874 33211 12234589999


Q ss_pred             EeeCCCcccc
Q 018571          191 DVEGDSWEEL  200 (354)
Q Consensus       191 ~L~ls~~~~t  200 (354)
                      +|++++....
T Consensus       128 ~L~l~~N~~~  137 (177)
T 2o6r_A          128 KIWLHTNPWD  137 (177)
T ss_dssp             EEECCSSCBC
T ss_pred             EEEecCCCee
Confidence            9999876543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=93.94  E-value=0.0021  Score=56.05  Aligned_cols=84  Identities=8%  Similarity=0.068  Sum_probs=41.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      +++++|+|+++.++...-..+...+++|+.|+|   .|+...-..+ .++++|++|+|+++. +++..-..+ .++++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~  105 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENK-IKEISNKMF-LGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCC-CCEECSSSS-TTCTTCC
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCc-CCccCHHHh-cCCCCCC
Confidence            366777777765543222112234667777777   3332111112 356677777777653 221111111 2356677


Q ss_pred             EeeCCCcccc
Q 018571          191 DVEGDSWEEL  200 (354)
Q Consensus       191 ~L~ls~~~~t  200 (354)
                      +|++++..++
T Consensus       106 ~L~L~~N~l~  115 (192)
T 1w8a_A          106 TLNLYDNQIS  115 (192)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCcCC
Confidence            7777665544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=93.37  E-value=0.003  Score=55.00  Aligned_cols=86  Identities=12%  Similarity=0.086  Sum_probs=55.5

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.. ++|++|+|++++++...-..+. .+++|+.|+|   .|+...-..+ .+.++|++|+|+++. ++...-..+ ..+
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~-~~l  125 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISNKMF-LGLHQLKTLNLYDNQ-ISCVMPGSF-EHL  125 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEECSSSS-TTCTTCCEEECCSSC-CCEECTTSS-TTC
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCc-CCeeCHHHh-hcC
Confidence            344 8999999999977643222333 4899999999   4432111112 368999999999874 332111122 347


Q ss_pred             CCCcEeeCCCcccc
Q 018571          187 PKLNDVEGDSWEEL  200 (354)
Q Consensus       187 p~L~~L~ls~~~~t  200 (354)
                      ++|++|++++....
T Consensus       126 ~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          126 NSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCCEEECTTCCBC
T ss_pred             CCCCEEEeCCCCcc
Confidence            89999999876544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=92.87  E-value=0.0078  Score=51.40  Aligned_cols=56  Identities=11%  Similarity=0.151  Sum_probs=25.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS  171 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC  171 (354)
                      ++++.|+|++++|+...-..+. .+++|+.|+|   +|+.-.- .+..++++|++|+|+++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCC
Confidence            4566666666644432111122 2556666666   3331000 01134556666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=92.40  E-value=0.0079  Score=52.56  Aligned_cols=86  Identities=14%  Similarity=0.089  Sum_probs=55.7

Q ss_pred             Hhhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhc
Q 018571          110 SLAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL  185 (354)
Q Consensus       110 ~la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~  185 (354)
                      .+.. ++|+.|+|+++.|+...-..+. .+++|+.|+|   .|+.-.-..+ .++++|++|+|+++. ++.-.- ..-..
T Consensus        49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~L~~N~-l~~~~~-~~~~~  124 (193)
T 2wfh_A           49 ELSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCIPPRTF-DGLKSLRLLSLHGND-ISVVPE-GAFND  124 (193)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECCSSC-CCBCCT-TTTTT
T ss_pred             HhhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEeCHHHh-CCCCCCCEEECCCCC-CCeeCh-hhhhc
Confidence            3444 8999999999977653322333 4899999999   4443221223 368999999999874 321111 11234


Q ss_pred             CCCCcEeeCCCccc
Q 018571          186 KPKLNDVEGDSWEE  199 (354)
Q Consensus       186 cp~L~~L~ls~~~~  199 (354)
                      +++|+.|++++...
T Consensus       125 l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          125 LSALSHLAIGANPL  138 (193)
T ss_dssp             CTTCCEEECCSSCE
T ss_pred             CccccEEEeCCCCe
Confidence            78999999976543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=91.62  E-value=0.016  Score=49.71  Aligned_cols=80  Identities=10%  Similarity=-0.011  Sum_probs=38.3

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++++|+...-..+ ..+++|+.|+|   .|+.-- ..+..++++|++|+|+++. ++.-.- ..-..+++|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~-l~~l~~-~~~~~l~~L~  108 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVF-DHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNH-LKSIPR-GAFDNLKSLT  108 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCS
T ss_pred             CCCcEEEeCCCCccccCHHHh-cCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCc-cceeCH-HHhccccCCC
Confidence            567777777775543211112 23667777777   333200 0111356667777776653 221000 1112356666


Q ss_pred             EeeCCCc
Q 018571          191 DVEGDSW  197 (354)
Q Consensus       191 ~L~ls~~  197 (354)
                      +|++++.
T Consensus       109 ~L~L~~N  115 (174)
T 2r9u_A          109 HIYLYNN  115 (174)
T ss_dssp             EEECCSS
T ss_pred             EEEeCCC
Confidence            6666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=89.55  E-value=0.0027  Score=60.42  Aligned_cols=32  Identities=9%  Similarity=-0.040  Sum_probs=15.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI  146 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL  146 (354)
                      +++++|+|++++|+.-.-..+ ..+++|+.|+|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~L   61 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEI   61 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSS-TTCTTCCEEEE
T ss_pred             CCCCEEEccCCcCCCcCHHHH-cCCCCCCEEEC
Confidence            355666666655442111111 23566666666

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=85.80  E-value=0.097  Score=51.21  Aligned_cols=53  Identities=19%  Similarity=0.041  Sum_probs=24.4

Q ss_pred             cCCCCCEEEecCCCC-------CcHHHHHHHHhcCCCCcEeeCCCc-cccchhhhhccCccccccc
Q 018571          159 HCHSLETLRCGGSPR-------SNHAARRCLGILKPKLNDVEGDSW-EELVNTDIGHGAQSLRWFV  216 (354)
Q Consensus       159 ~Cp~Le~L~L~gC~~-------ItD~sL~~La~~cp~L~~L~ls~~-~~td~~~i~~~~~~L~~L~  216 (354)
                      +|++|+.+++.+...       +.+.+.    .+|++|+.+.+... .....+. -.+|.+|+.+.
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF----~~c~~L~~l~l~~~i~~I~~~a-F~~c~~L~~l~  329 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPYCL----EGCPKLARFEIPESIRILGQGL-LGGNRKVTQLT  329 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTTTT----TTCTTCCEECCCTTCCEECTTT-TTTCCSCCEEE
T ss_pred             CCCCCCEEEeCCccccCCcccEECHHHh----hCCccCCeEEeCCceEEEhhhh-hcCCCCccEEE
Confidence            566666666654321       222211    24666666665421 1111111 24455666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=81.77  E-value=0.076  Score=51.95  Aligned_cols=51  Identities=14%  Similarity=-0.018  Sum_probs=22.7

Q ss_pred             cCCCCcEeeCCCcccc-------chhhhhccCcccccccc-CCCCHHHHHHHHhcCCccee
Q 018571          185 LKPKLNDVEGDSWEEL-------VNTDIGHGAQSLRWFVW-PNIDKDSIEMMSTECPRIIV  237 (354)
Q Consensus       185 ~cp~L~~L~ls~~~~t-------d~~~i~~~~~~L~~L~C-~~ITD~~l~~L~~~Cp~L~~  237 (354)
                      +|++|+.+.+.+....       ..+ .-.+|.+|+.+.- .+|+.-+- ..-.+|++|+.
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~-aF~~c~~L~~l~l~~~i~~I~~-~aF~~c~~L~~  327 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPY-CLEGCPKLARFEIPESIRILGQ-GLLGGNRKVTQ  327 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTT-TTTTCTTCCEECCCTTCCEECT-TTTTTCCSCCE
T ss_pred             CCCCCCEEEeCCccccCCcccEECHH-HhhCCccCCeEEeCCceEEEhh-hhhcCCCCccE
Confidence            4666666655443222       111 1245666666652 12222111 12245666666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	354
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 117 EILDISGSDVSDFGLVKVAQMCKSLKAVDIR---ITAAGV---SEFLLHCHSLETL 166
           + LDI   ++SD    ++  + +  + V +    +T A     S  L    +L  L
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	354
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.79
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.07
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.99
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.93
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.1
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.81
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.77
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.04
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.58
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.56
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.51
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.42
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	95.49
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	94.9
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	94.18
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.07
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	92.99
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	92.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	88.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	88.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	88.04
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	83.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	83.35
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	82.21
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	81.25

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.9e-20  Score=169.58  Aligned_cols=158  Identities=18%  Similarity=0.209  Sum_probs=136.3

Q ss_pred             CCCHHHHHHhhc-CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHH-HHhcCCCCCEEEecCCC-C
Q 018571          102 LLADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSE-FLLHCHSLETLRCGGSP-R  173 (354)
Q Consensus       102 ~ltD~~L~~la~-~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~-La~~Cp~Le~L~L~gC~-~  173 (354)
                      .++|..+..++. ++|++|+|++| +|||.|+..++..|++|++|+|    .++|.|+.. ++..|++|++|+++||. .
T Consensus        82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (284)
T d2astb2          82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  161 (284)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc
Confidence            378999999988 99999999999 9999999999999999999999    789999865 56678999999999984 7


Q ss_pred             CcHHHHHHHHhcCCCCcEeeCCCc-cccchhhh-hccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecC
Q 018571          174 SNHAARRCLGILKPKLNDVEGDSW-EELVNTDI-GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRG  248 (354)
Q Consensus       174 ItD~sL~~La~~cp~L~~L~ls~~-~~td~~~i-~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~g  248 (354)
                      ++|.++..++.+||+|++|+++++ .++|.++. -..+++|++|+   |.+|||.++..+. .||+|+.      +++.|
T Consensus       162 i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~------L~l~~  234 (284)
T d2astb2         162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKT------LQVFG  234 (284)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCE------EECTT
T ss_pred             cccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh-cCCCCCE------EeeeC
Confidence            999999999999999999999886 46776653 24578999987   9999999998875 6999999      99999


Q ss_pred             CCCCccccccccCCCCccc
Q 018571          249 FEVPREAFPDITLDDPFVN  267 (354)
Q Consensus       249 C~~s~~al~~v~~~~~~v~  267 (354)
                      | +++++++.+.-.+|.++
T Consensus       235 ~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         235 I-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             S-SCTTCHHHHHHHSTTSE
T ss_pred             C-CCHHHHHHHHHhCcccc
Confidence            9 78877776665555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.8e-19  Score=166.49  Aligned_cols=160  Identities=9%  Similarity=0.128  Sum_probs=87.9

Q ss_pred             CCHHHHHHhhc--CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcH
Q 018571          103 LADDVIMSLAD--SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNH  176 (354)
Q Consensus       103 ltD~~L~~la~--~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD  176 (354)
                      ++++.+..+..  ++|++|+|++|.++|.++..+++ |++|++|+|    .|||.|+..++++|++|++|++++|..++|
T Consensus        58 i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~  136 (284)
T d2astb2          58 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE  136 (284)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhcccccccccccccc
Confidence            45555544443  56666666666666666665554 566666666    556666666666666666666666666666


Q ss_pred             HHHH-HHHhcCCCCcEeeCCCc--cccchhh--hhccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecC
Q 018571          177 AARR-CLGILKPKLNDVEGDSW--EELVNTD--IGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRG  248 (354)
Q Consensus       177 ~sL~-~La~~cp~L~~L~ls~~--~~td~~~--i~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~g  248 (354)
                      .++. .++..|+.|+.|+++++  .++|.++  +...|++|+.|+   |..|||.++..+. .||+|+.      |++.+
T Consensus       137 ~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~------L~L~~  209 (284)
T d2astb2         137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQH------LSLSR  209 (284)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCE------EECTT
T ss_pred             ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCE------EECCC
Confidence            5553 34444556666666554  2344433  234455565554   5556666655554 3566666      66666


Q ss_pred             CC-CCccccccccCCCCccccccc
Q 018571          249 FE-VPREAFPDITLDDPFVNDIDP  271 (354)
Q Consensus       249 C~-~s~~al~~v~~~~~~v~~~~~  271 (354)
                      |. ++++++..+. .+|.++.++.
T Consensus       210 C~~i~~~~l~~L~-~~~~L~~L~l  232 (284)
T d2astb2         210 CYDIIPETLLELG-EIPTLKTLQV  232 (284)
T ss_dssp             CTTCCGGGGGGGG-GCTTCCEEEC
T ss_pred             CCCCChHHHHHHh-cCCCCCEEee
Confidence            64 5555554432 3455555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.8e-10  Score=106.37  Aligned_cols=104  Identities=12%  Similarity=0.095  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHhhc--CCccEEEeecCCCCHHHHHHHH---HhCCCCcEEEE---eecHHHHHHHHhc----CCCCCEEE
Q 018571          100 RKLLADDVIMSLAD--SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDI---RITAAGVSEFLLH----CHSLETLR  167 (354)
Q Consensus       100 ~~~ltD~~L~~la~--~~L~~LdLs~C~ITD~gL~~la---~~C~~L~~LdL---~ITd~gl~~La~~----Cp~Le~L~  167 (354)
                      +..++|..+..+..  ++++.|+|++|+|+|.|+..|+   ..|++|+.|||   .|+|.|+..+++.    .++|++|+
T Consensus        11 ~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~   90 (460)
T d1z7xw1          11 CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS   90 (460)
T ss_dssp             SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred             CCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEE
Confidence            34566666555544  6777777777777777766655   45777777777   6777777777653    34577777


Q ss_pred             ecCCCCCcHHHHHHHHh---cCCCCcEeeCCCccccchhh
Q 018571          168 CGGSPRSNHAARRCLGI---LKPKLNDVEGDSWEELVNTD  204 (354)
Q Consensus       168 L~gC~~ItD~sL~~La~---~cp~L~~L~ls~~~~td~~~  204 (354)
                      |++|. ++|.++..++.   .++.|++|++++..+.+.|.
T Consensus        91 L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~  129 (460)
T d1z7xw1          91 LQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL  129 (460)
T ss_dssp             CTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred             CCCCC-ccccccccccchhhccccccccccccccchhhhh
Confidence            77773 67666655543   46677777777766666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.99  E-value=2.2e-09  Score=100.19  Aligned_cols=134  Identities=16%  Similarity=0.232  Sum_probs=99.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHH---HhCCCCcEEEE---eecHHHHHHH----HhcCCCCCEEEecCCCCCcHHHHHHHH
Q 018571          114 SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDI---RITAAGVSEF----LLHCHSLETLRCGGSPRSNHAARRCLG  183 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la---~~C~~L~~LdL---~ITd~gl~~L----a~~Cp~Le~L~L~gC~~ItD~sL~~La  183 (354)
                      +.|+.|+++++.++|.|+..++   ..++.|+.|+|   .|++.|+..+    ...|++|++|+|+++ .+++.+...|+
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~  236 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALA  236 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccc-ccccccccccc
Confidence            6788888888888888777654   34788888888   7888876543    246888889998876 47887777665


Q ss_pred             ---hcCCCCcEeeCCCccccchhhh--h-----ccCccccccc--cCCCCHHHHHHHHh----cCCcceecCCCCceeec
Q 018571          184 ---ILKPKLNDVEGDSWEELVNTDI--G-----HGAQSLRWFV--WPNIDKDSIEMMST----ECPRIIVNPKPSPFGFR  247 (354)
Q Consensus       184 ---~~cp~L~~L~ls~~~~td~~~i--~-----~~~~~L~~L~--C~~ITD~~l~~L~~----~Cp~L~~~p~~~~L~l~  247 (354)
                         ..|++|++|+++++.+.+.|..  +     ....+|+.|+  +.+|+++++..+.+    +++.|+.      +++.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~------L~l~  310 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF------LELN  310 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE------EECT
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCE------EECC
Confidence               4688888888888888887653  1     1235677777  66788888776654    6888888      8888


Q ss_pred             CCCCCcc
Q 018571          248 GFEVPRE  254 (354)
Q Consensus       248 gC~~s~~  254 (354)
                      |..++.+
T Consensus       311 ~N~~~~~  317 (344)
T d2ca6a1         311 GNRFSEE  317 (344)
T ss_dssp             TSBSCTT
T ss_pred             CCcCCCc
Confidence            8876433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.6e-09  Score=98.12  Aligned_cols=116  Identities=11%  Similarity=0.071  Sum_probs=95.3

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHH---hcCCCCCEEEecCCCCCcHHHHHHHHhc--
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCLGIL--  185 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La---~~Cp~Le~L~L~gC~~ItD~sL~~La~~--  185 (354)
                      ++|+.||+++.+|+|.++..+...+++|+.|+|   .|||.|+.+|+   ++|++|++|+|+++ .++|.++..++..  
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHh
Confidence            468999998779999999998888999999999   88999988777   68999999999986 6899999888764  


Q ss_pred             --CCCCcEeeCCCccccchhhh--h---ccCccccccc--cCCCCHHHHHHHHh
Q 018571          186 --KPKLNDVEGDSWEELVNTDI--G---HGAQSLRWFV--WPNIDKDSIEMMST  230 (354)
Q Consensus       186 --cp~L~~L~ls~~~~td~~~i--~---~~~~~L~~L~--C~~ITD~~l~~L~~  230 (354)
                        .++|++|+++++.++|.+..  +   ..+++|++|+  ...|++.++..+..
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~  134 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE  134 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhh
Confidence              35799999999988887642  2   4567888887  55688888777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.89  E-value=4.6e-09  Score=97.91  Aligned_cols=162  Identities=11%  Similarity=0.021  Sum_probs=108.6

Q ss_pred             CCCHHHHHHhhc-----CCccEEEeecCCCCHHHHHHHHH------------hCCCCcEEEE---eecHHHHHHHH---h
Q 018571          102 LLADDVIMSLAD-----SSWEILDISGSDVSDFGLVKVAQ------------MCKSLKAVDI---RITAAGVSEFL---L  158 (354)
Q Consensus       102 ~ltD~~L~~la~-----~~L~~LdLs~C~ITD~gL~~la~------------~C~~L~~LdL---~ITd~gl~~La---~  158 (354)
                      .+++.++..+..     ++|++|+|++|.+++.|...++.            .++.|+.+++   .+++.|+..++   .
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            356655554432     78888888888888877665533            3577888888   67777766654   4


Q ss_pred             cCCCCCEEEecCCCCCcHHHHHH-H---HhcCCCCcEeeCCCccccchhhh-----hccCccccccc--cCCCCHHHHHH
Q 018571          159 HCHSLETLRCGGSPRSNHAARRC-L---GILKPKLNDVEGDSWEELVNTDI-----GHGAQSLRWFV--WPNIDKDSIEM  227 (354)
Q Consensus       159 ~Cp~Le~L~L~gC~~ItD~sL~~-L---a~~cp~L~~L~ls~~~~td~~~i-----~~~~~~L~~L~--C~~ITD~~l~~  227 (354)
                      .|+.|++|++++| .+++.++.. +   ...+++|+.|++++..+++.|..     -..+++|++|+  ..+|++.|+..
T Consensus       184 ~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         184 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhcccccccc-cccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            5788888888887 467766543 2   24578888888888777776642     24567788777  45688888887


Q ss_pred             HHhc-----CCcceecCCCCceeecCCCCCccccccccC----CCCcccccc
Q 018571          228 MSTE-----CPRIIVNPKPSPFGFRGFEVPREAFPDITL----DDPFVNDID  270 (354)
Q Consensus       228 L~~~-----Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~----~~~~v~~~~  270 (354)
                      ++..     .+.|+.      |++.++.+..+++..+.-    ..+.++.++
T Consensus       263 l~~~l~~~~~~~L~~------L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  308 (344)
T d2ca6a1         263 VVDAFSKLENIGLQT------LRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  308 (344)
T ss_dssp             HHHHHHTCSSCCCCE------EECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHhhhccCCCCCE------EECCCCcCChHHHHHHHHHHHccCCCCCEEE
Confidence            7642     356777      888888877665443332    344455443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.83  E-value=1.9e-08  Score=84.89  Aligned_cols=119  Identities=11%  Similarity=0.109  Sum_probs=79.6

Q ss_pred             HHHHHhhc--CCccEEEeecC-CCCHHHHHHHHH---hCCCCcEEEE---eecHHHHHHHHh---cCCCCCEEEecCCCC
Q 018571          106 DVIMSLAD--SSWEILDISGS-DVSDFGLVKVAQ---MCKSLKAVDI---RITAAGVSEFLL---HCHSLETLRCGGSPR  173 (354)
Q Consensus       106 ~~L~~la~--~~L~~LdLs~C-~ITD~gL~~la~---~C~~L~~LdL---~ITd~gl~~La~---~Cp~Le~L~L~gC~~  173 (354)
                      +.+..+..  +.|++|+|+++ .+++.|+..+++   .+++|++|+|   .+++.|+.+|+.   +++.|+.|++++| .
T Consensus         7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~   85 (166)
T d1io0a_           7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-F   85 (166)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-C
T ss_pred             HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-c
Confidence            44555543  88888888886 788888877775   4677888888   777877776653   5777888888765 4


Q ss_pred             CcHHHHHHHHh---cCCCCcEeeCCCccccchhhhhccCccccccccCCCCHHHHHHHH---hcCCcceecCCCCceeec
Q 018571          174 SNHAARRCLGI---LKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMS---TECPRIIVNPKPSPFGFR  247 (354)
Q Consensus       174 ItD~sL~~La~---~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~C~~ITD~~l~~L~---~~Cp~L~~~p~~~~L~l~  247 (354)
                      +++.++..|+.   .++.|+.++++.+                   ...++|+|..+|+   ..|+.|+.      |++.
T Consensus        86 ~~~~g~~~l~~~l~~~~~L~~l~L~l~-------------------~n~i~~~~~~~La~~L~~n~~L~~------L~l~  140 (166)
T d1io0a_          86 ISGSGILALVEALQSNTSLIELRIDNQ-------------------SQPLGNNVEMEIANMLEKNTTLLK------FGYH  140 (166)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCC-------------------SSCCCHHHHHHHHHHHHHCSSCCE------EECC
T ss_pred             ccchhHHHHHHHHHhCccccEEeeccC-------------------CCcCcHHHHHHHHHHHHhCCCcCE------EeCc
Confidence            66777766663   3455665544321                   3456676655554   37777777      7766


Q ss_pred             CCC
Q 018571          248 GFE  250 (354)
Q Consensus       248 gC~  250 (354)
                      +..
T Consensus       141 ~~~  143 (166)
T d1io0a_         141 FTQ  143 (166)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.83  E-value=2.2e-08  Score=85.13  Aligned_cols=92  Identities=13%  Similarity=0.140  Sum_probs=73.0

Q ss_pred             HHHHHHhhc--CCccEEEeecC-CCCHHHHHHHHH---hCCCCcEEEE---eecHHHHHHHHh---cCCCCCEEEecCCC
Q 018571          105 DDVIMSLAD--SSWEILDISGS-DVSDFGLVKVAQ---MCKSLKAVDI---RITAAGVSEFLL---HCHSLETLRCGGSP  172 (354)
Q Consensus       105 D~~L~~la~--~~L~~LdLs~C-~ITD~gL~~la~---~C~~L~~LdL---~ITd~gl~~La~---~Cp~Le~L~L~gC~  172 (354)
                      |+.+..+..  +.|++|+|+++ .|+++|+..++.   .++.|++|+|   .++|.|+.+++.   .++.|++|+|++| 
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-   82 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-   82 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-
Confidence            345666665  89999999988 799999887764   4678999999   899988777764   5889999999988 


Q ss_pred             CCcHHHHHHHHhc---CCCCcEeeCCCc
Q 018571          173 RSNHAARRCLGIL---KPKLNDVEGDSW  197 (354)
Q Consensus       173 ~ItD~sL~~La~~---cp~L~~L~ls~~  197 (354)
                      .+++.++..|+..   ++.|++|++++.
T Consensus        83 ~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          83 FLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            6899888887654   456888888654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.55  E-value=2.9e-07  Score=77.34  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=82.6

Q ss_pred             CCCCHHHHHHhhc-----CCccEEEeecCCCCHHHHHHHHH---hCCCCcEEEE---eecHHHHHHHH---hcCCCCCEE
Q 018571          101 KLLADDVIMSLAD-----SSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDI---RITAAGVSEFL---LHCHSLETL  166 (354)
Q Consensus       101 ~~ltD~~L~~la~-----~~L~~LdLs~C~ITD~gL~~la~---~C~~L~~LdL---~ITd~gl~~La---~~Cp~Le~L  166 (354)
                      ..++|+++..|+.     ++|++|+|++|.+++.|+..++.   .++.|+.+++   .++++|+..|+   ..++.|+.+
T Consensus        28 ~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l  107 (166)
T d1io0a_          28 MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL  107 (166)
T ss_dssp             TTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEE
T ss_pred             CCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEE
Confidence            4588998877764     89999999999999999988764   4799999999   89999998888   567889999


Q ss_pred             EecCCC-CCcHHHHHHHHh---cCCCCcEeeCCCcc
Q 018571          167 RCGGSP-RSNHAARRCLGI---LKPKLNDVEGDSWE  198 (354)
Q Consensus       167 ~L~gC~-~ItD~sL~~La~---~cp~L~~L~ls~~~  198 (354)
                      +|+.|. .++|.+..+|+.   .++.|++|+++...
T Consensus       108 ~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         108 RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             ECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             eeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            998764 899999888775   78999999986543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.42  E-value=6.8e-07  Score=75.56  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=79.4

Q ss_pred             CCCCHHHHHHhhc-----CCccEEEeecCCCCHHHHHHHHH---hCCCCcEEEE---eecHHHHHHHHh---cCCCCCEE
Q 018571          101 KLLADDVIMSLAD-----SSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDI---RITAAGVSEFLL---HCHSLETL  166 (354)
Q Consensus       101 ~~ltD~~L~~la~-----~~L~~LdLs~C~ITD~gL~~la~---~C~~L~~LdL---~ITd~gl~~La~---~Cp~Le~L  166 (354)
                      ..++++++..++.     ++|++|+|++|.++|.|...++.   .++.|++|+|   .|++.|+..|++   .++.|++|
T Consensus        26 ~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L  105 (167)
T d1pgva_          26 KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEF  105 (167)
T ss_dssp             CSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEE
T ss_pred             CCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEE
Confidence            3588888776653     78999999999999999887764   4899999999   999999998875   46779999


Q ss_pred             EecCC--CCCcHHHHHHHHh---cCCCCcEeeCCCc
Q 018571          167 RCGGS--PRSNHAARRCLGI---LKPKLNDVEGDSW  197 (354)
Q Consensus       167 ~L~gC--~~ItD~sL~~La~---~cp~L~~L~ls~~  197 (354)
                      +++++  ..+++.+..+|+.   .++.|+.|+++..
T Consensus       106 ~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         106 KADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             ECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             ECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            99977  3678887666653   4799999988654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5.4e-07  Score=76.02  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=80.9

Q ss_pred             CCHHHHHHhhc----CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCc
Q 018571          103 LADDVIMSLAD----SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSN  175 (354)
Q Consensus       103 ltD~~L~~la~----~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~It  175 (354)
                      +|.+.+.....    ..+++|+|++|+|+.-  ..+...+++|+.|||   .|++  +..+ .++++|++|++++|.- +
T Consensus         3 Lt~~~i~~~~~~~n~~~lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N~i~~--l~~~-~~l~~L~~L~ls~N~i-~   76 (162)
T d1a9na_           3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRK--LDGF-PLLRRLKTLLVNNNRI-C   76 (162)
T ss_dssp             CCHHHHHTSCEEECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCE--ECCC-CCCSSCCEEECCSSCC-C
T ss_pred             CCHHHHhhhHhccCcCcCcEEECCCCCCCcc--CccccccccCCEEECCCCCCCc--cCCc-ccCcchhhhhcccccc-c
Confidence            56666654432    5789999999977653  234456899999999   4432  1112 4789999999999853 2


Q ss_pred             HHHHHHHHhcCCCCcEeeCCCccccchhhh--hccCccccccc--cCCCCHHH--HHHHHhcCCccee
Q 018571          176 HAARRCLGILKPKLNDVEGDSWEELVNTDI--GHGAQSLRWFV--WPNIDKDS--IEMMSTECPRIIV  237 (354)
Q Consensus       176 D~sL~~La~~cp~L~~L~ls~~~~td~~~i--~~~~~~L~~L~--C~~ITD~~--l~~L~~~Cp~L~~  237 (354)
                      .-. ..+...+|+|++|++++..+.+-..+  -..+++|+.|+  ...+++..  ...+...||+|++
T Consensus        77 ~l~-~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~  143 (162)
T d1a9na_          77 RIG-EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRV  143 (162)
T ss_dssp             EEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSE
T ss_pred             CCC-ccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCe
Confidence            210 12345689999999998877664432  24567777776  11232211  2334566777777

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.81  E-value=7.8e-06  Score=70.09  Aligned_cols=30  Identities=10%  Similarity=0.169  Sum_probs=13.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI  146 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL  146 (354)
                      +++++|++++|+|++-  ..+ ..|++|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l-~~l~nL~~L~L   69 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGV-EYLNNLTQINF   69 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTG-GGCTTCCEEEC
T ss_pred             cCCCEEECCCCCCCCc--ccc-ccCCCcCcCcc
Confidence            4455555555544431  111 22555555555

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.77  E-value=8.3e-07  Score=77.15  Aligned_cols=94  Identities=11%  Similarity=0.059  Sum_probs=44.4

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++|+|++-  ..+. .|++|+.|+|   .|++  +..+...+++|++|+++++ .+++  +..+. ++++|+
T Consensus        48 ~~L~~L~Ls~n~I~~i--~~l~-~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N-~i~~--l~~~~-~l~~L~  118 (198)
T d1m9la_          48 KACKHLALSTNNIEKI--SSLS-GMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN-QIAS--LSGIE-KLVNLR  118 (198)
T ss_dssp             TTCCEEECSEEEESCC--CCHH-HHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEE-ECCC--HHHHH-HHHHSS
T ss_pred             cccceeECcccCCCCc--cccc-CCccccChhhccccccc--ccccccccccccccccccc-cccc--ccccc-cccccc
Confidence            5666666666644432  1122 3566666666   4443  1112223345666666655 3332  12222 255666


Q ss_pred             EeeCCCccccchhhh--hccCccccccc
Q 018571          191 DVEGDSWEELVNTDI--GHGAQSLRWFV  216 (354)
Q Consensus       191 ~L~ls~~~~td~~~i--~~~~~~L~~L~  216 (354)
                      .|++++..+++...+  -..+++|+.|+
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             ccccccchhccccccccccCCCccceee
Confidence            666665555443322  13344555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=8.4e-06  Score=68.41  Aligned_cols=108  Identities=11%  Similarity=0.074  Sum_probs=76.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.|+|++|+|++-  ..+ ..+++|+.|++   .|+.-. ..+..++++|++|+++++.-.+=..+..+. .+|+|+
T Consensus        41 ~~L~~L~Ls~N~i~~l--~~~-~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~-~l~~L~  115 (162)
T d1a9na_          41 DQFDAIDFSDNEIRKL--DGF-PLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLVELGDLDPLA-SLKSLT  115 (162)
T ss_dssp             TCCSEEECCSSCCCEE--CCC-CCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGGG-GCTTCC
T ss_pred             ccCCEEECCCCCCCcc--CCc-ccCcchhhhhcccccccCCC-ccccccccccccceeccccccccccccccc-cccccc
Confidence            7899999999977753  122 45899999999   443211 123457999999999998533222344454 589999


Q ss_pred             EeeCCCccccchhh----hhccCccccccccCCCCHHHHH
Q 018571          191 DVEGDSWEELVNTD----IGHGAQSLRWFVWPNIDKDSIE  226 (354)
Q Consensus       191 ~L~ls~~~~td~~~----i~~~~~~L~~L~C~~ITD~~l~  226 (354)
                      +|+++++.+++...    +...+++|++|+...||++-..
T Consensus       116 ~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i~~~er~  155 (162)
T d1a9na_         116 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ  155 (162)
T ss_dssp             EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred             hhhcCCCccccccchHHHHHHHCCCcCeeCCCCCCHHHHH
Confidence            99999987765431    2456799999998888886544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.67  E-value=1.1e-05  Score=69.19  Aligned_cols=123  Identities=12%  Similarity=0.072  Sum_probs=89.2

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.. ++|++|+|++|++++..  .+. .+++|+.|++   .++.  +..+ .+++.|+.|++++|.......   + .++
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~--~l~-~l~~L~~L~l~~n~~~~--~~~l-~~l~~L~~L~l~~~~~~~~~~---~-~~l  127 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDIT--PLK-NLTKLVDILMNNNQIAD--ITPL-ANLTNLTGLTLFNNQITDIDP---L-KNL  127 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGT-TCTTCCEEECCSSCCCC--CGGG-TTCTTCSEEECCSSCCCCCGG---G-TTC
T ss_pred             cccCCCcCcCccccccccCcc--ccc-CCccccccccccccccc--cccc-ccccccccccccccccccccc---c-chh
Confidence            444 89999999999887632  233 5999999999   3332  2223 479999999999987665432   2 358


Q ss_pred             CCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571          187 PKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR  253 (354)
Q Consensus       187 p~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~  253 (354)
                      ++|+.|++++..+..... -.++++|+.|+  +..+++-  .. ..++++|+.      |++.+|++++
T Consensus       128 ~~L~~L~l~~n~l~~~~~-l~~~~~L~~L~l~~n~l~~l--~~-l~~l~~L~~------L~ls~N~i~~  186 (199)
T d2omxa2         128 TNLNRLELSSNTISDISA-LSGLTSLQQLNFSSNQVTDL--KP-LANLTTLER------LDISSNKVSD  186 (199)
T ss_dssp             TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCC--GG-GTTCTTCCE------EECCSSCCCC
T ss_pred             hhhHHhhhhhhhhccccc-ccccccccccccccccccCC--cc-ccCCCCCCE------EECCCCCCCC
Confidence            999999999887655332 25678888887  4456652  22 468999999      9999999754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.62  E-value=2.1e-05  Score=68.34  Aligned_cols=120  Identities=13%  Similarity=0.178  Sum_probs=69.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      .+|+.|++.+|+|++  +..+. .+++|+.|++   .|++  +..+ ..|++|++|++++|....   +..++ +++.|+
T Consensus        41 ~~L~~L~l~~~~i~~--l~~l~-~l~~L~~L~ls~n~i~~--~~~l-~~l~~l~~l~~~~n~~~~---i~~l~-~l~~L~  110 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT--IEGVQ-YLNNLIGLELKDNQITD--LAPL-KNLTKITELELSGNPLKN---VSAIA-GLQSIK  110 (227)
T ss_dssp             HTCCEEECTTSCCCC--CTTGG-GCTTCCEEECCSSCCCC--CGGG-TTCCSCCEEECCSCCCSC---CGGGT-TCTTCC
T ss_pred             CCcCEEECCCCCCCc--chhHh-cCCCCcEeecCCceeec--cccc-cccccccccccccccccc---ccccc-cccccc
Confidence            678888888887664  23333 4888888888   4443  2222 467888888888764322   22333 477777


Q ss_pred             EeeCCCccccchhhh---------------------hccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeec
Q 018571          191 DVEGDSWEELVNTDI---------------------GHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFR  247 (354)
Q Consensus       191 ~L~ls~~~~td~~~i---------------------~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~  247 (354)
                      .++++++...+...+                     ...+++|+.|+  +..+++..  . ..++++|+.      +++.
T Consensus       111 ~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~-l~~l~~L~~------L~Ls  181 (227)
T d1h6ua2         111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTT------LKAD  181 (227)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCE------EECC
T ss_pred             ccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch--h-hccccccee------cccC
Confidence            777766554332110                     13445666665  33343321  1 346777777      7777


Q ss_pred             CCCCC
Q 018571          248 GFEVP  252 (354)
Q Consensus       248 gC~~s  252 (354)
                      +|.++
T Consensus       182 ~n~l~  186 (227)
T d1h6ua2         182 DNKIS  186 (227)
T ss_dssp             SSCCC
T ss_pred             CCccC
Confidence            77653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.59  E-value=1.2e-05  Score=69.57  Aligned_cols=13  Identities=15%  Similarity=0.013  Sum_probs=6.6

Q ss_pred             cCCCCCEEEecCC
Q 018571          159 HCHSLETLRCGGS  171 (354)
Q Consensus       159 ~Cp~Le~L~L~gC  171 (354)
                      ++++|++|++++|
T Consensus        88 ~l~~L~~L~l~~n  100 (210)
T d1h6ta2          88 NLKNLGWLFLDEN  100 (210)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cCccccccccccc
Confidence            3455555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.52  E-value=1.4e-05  Score=69.08  Aligned_cols=122  Identities=14%  Similarity=0.047  Sum_probs=89.1

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.. ++|++|+|++|++++.  ..+. .+++|+.|++   .|++  +..+ .++++|+.|++++|....-.   .+. ++
T Consensus        64 l~~l~~L~~L~L~~n~i~~l--~~~~-~l~~L~~L~l~~n~i~~--l~~l-~~l~~L~~L~l~~~~~~~~~---~l~-~l  133 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDI--KPLA-NLKNLGWLFLDENKVKD--LSSL-KDLKKLKSLSLEHNGISDIN---GLV-HL  133 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGT-TCTTCCEEECCSSCCCC--GGGG-TTCTTCCEEECTTSCCCCCG---GGG-GC
T ss_pred             HhhCCCCCEEeCCCccccCc--cccc-cCccccccccccccccc--cccc-cccccccccccccccccccc---ccc-cc
Confidence            444 8999999999988763  2343 4899999999   6664  3333 46899999999998654322   333 58


Q ss_pred             CCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          187 PKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       187 p~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      ++|+.+++++..+++... ...+++|+.++  ..++++  +.. ..++++|+.      |++.+|.++
T Consensus       134 ~~l~~l~~~~n~l~~~~~-~~~l~~L~~l~l~~n~l~~--i~~-l~~l~~L~~------L~Ls~N~i~  191 (210)
T d1h6ta2         134 PQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQN------LYLSKNHIS  191 (210)
T ss_dssp             TTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCE------EECCSSCCC
T ss_pred             cccccccccccccccccc-ccccccccccccccccccc--ccc-ccCCCCCCE------EECCCCCCC
Confidence            999999998888776554 34568888887  234553  222 457899999      999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.35  E-value=3.1e-05  Score=67.13  Aligned_cols=141  Identities=10%  Similarity=0.080  Sum_probs=89.3

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHH-----
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRC-----  181 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~-----  181 (354)
                      +.. ++|+.|+|++|.+++.  ..+ ..|++|+.+++   .+++  +..++ ++++|++|++++|....-..+..     
T Consensus        59 l~~l~~L~~L~ls~n~i~~~--~~l-~~l~~l~~l~~~~n~~~~--i~~l~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~  132 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDL--APL-KNLTKITELELSGNPLKN--VSAIA-GLQSIKTLDLTSTQITDVTPLAGLSNLQ  132 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGG-TTCCSCCEEECCSCCCSC--CGGGT-TCTTCCEEECTTSCCCCCGGGTTCTTCC
T ss_pred             HhcCCCCcEeecCCceeecc--ccc-cccccccccccccccccc--ccccc-ccccccccccccccccccchhccccchh
Confidence            444 8899999998876652  223 44888888888   3443  23344 67888888888775332211100     


Q ss_pred             -------------HHhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceee
Q 018571          182 -------------LGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGF  246 (354)
Q Consensus       182 -------------La~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l  246 (354)
                                   -..++++|+.|+++++...+...+ ..+++|+.|+  +..+++  +.. ..++|+|+.      |++
T Consensus       133 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l-~~l~~L~~L~Ls~n~l~~--l~~-l~~l~~L~~------L~L  202 (227)
T d1h6ua2         133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL-ANLSKLTTLKADDNKISD--ISP-LASLPNLIE------VHL  202 (227)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG-TTCTTCCEEECCSSCCCC--CGG-GGGCTTCCE------EEC
T ss_pred             hhhchhhhhchhhhhccccccccccccccccccchhh-cccccceecccCCCccCC--Chh-hcCCCCCCE------EEC
Confidence                         114578888888888776654433 4578899998  446765  222 468999999      999


Q ss_pred             cCCCCCccccccccCCCCcccccc
Q 018571          247 RGFEVPREAFPDITLDDPFVNDID  270 (354)
Q Consensus       247 ~gC~~s~~al~~v~~~~~~v~~~~  270 (354)
                      .+|.++.  ++.+ .+.+.++.++
T Consensus       203 s~N~lt~--i~~l-~~l~~L~~L~  223 (227)
T d1h6ua2         203 KNNQISD--VSPL-ANTSNLFIVT  223 (227)
T ss_dssp             TTSCCCB--CGGG-TTCTTCCEEE
T ss_pred             cCCcCCC--Cccc-ccCCCCCEEE
Confidence            9999753  3322 2444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.26  E-value=1.1e-05  Score=69.92  Aligned_cols=81  Identities=15%  Similarity=0.129  Sum_probs=56.5

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcH-HHHHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNH-AARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD-~sL~~La~~cp~L  189 (354)
                      ++|+.|+|++|.|++-  ..+...+++|+.|++   .|++  +..+. ++++|++|+++++. +++ ..+..+.. +|+|
T Consensus        70 ~~L~~L~Ls~N~i~~i--~~~~~~~~~L~~L~l~~N~i~~--l~~~~-~l~~L~~L~L~~N~-i~~~~~~~~l~~-l~~L  142 (198)
T d1m9la_          70 ENLRILSLGRNLIKKI--ENLDAVADTLEELWISYNQIAS--LSGIE-KLVNLRVLYMSNNK-ITNWGEIDKLAA-LDKL  142 (198)
T ss_dssp             TTCCEEECCEEEECSC--SSHHHHHHHCCEEECSEEECCC--HHHHH-HHHHSSEEEESEEE-CCCHHHHHHHTT-TTTC
T ss_pred             ccccChhhcccccccc--cccccccccccccccccccccc--ccccc-ccccccccccccch-hccccccccccC-CCcc
Confidence            7899999999966642  122333568999999   6664  33343 57889999999874 444 34555554 8999


Q ss_pred             cEeeCCCccccc
Q 018571          190 NDVEGDSWEELV  201 (354)
Q Consensus       190 ~~L~ls~~~~td  201 (354)
                      +.|++++..+.+
T Consensus       143 ~~L~L~~N~l~~  154 (198)
T d1m9la_         143 EDLLLAGNPLYN  154 (198)
T ss_dssp             SEEEECSSHHHH
T ss_pred             ceeecCCCcccc
Confidence            999998865443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.04  E-value=4e-05  Score=61.32  Aligned_cols=14  Identities=14%  Similarity=0.048  Sum_probs=6.8

Q ss_pred             CCCCcEeeCCCccc
Q 018571          186 KPKLNDVEGDSWEE  199 (354)
Q Consensus       186 cp~L~~L~ls~~~~  199 (354)
                      +|+|++|++++..+
T Consensus        64 l~~L~~L~l~~N~i   77 (124)
T d1dcea3          64 LPRLQELLLCNNRL   77 (124)
T ss_dssp             CSSCCEEECCSSCC
T ss_pred             ccccCeEECCCCcc
Confidence            45555555544443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.94  E-value=6.7e-05  Score=59.97  Aligned_cols=85  Identities=15%  Similarity=0.072  Sum_probs=59.3

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.+ ++|++|++++++|++-- ..+ ..+++|+.|++   .|++  +..+ .++++|++|+++++.--+-..+..++ .|
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp-~~~-~~l~~L~~L~l~~N~i~~--l~~~-~~l~~L~~L~l~~N~i~~~~~~~~l~-~~   89 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALP-PAL-AALRCLEVLQASDNALEN--VDGV-ANLPRLQELLLCNNRLQQSAAIQPLV-SC   89 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCC-GGG-GGCTTCCEEECCSSCCCC--CGGG-TTCSSCCEEECCSSCCCSSSTTGGGG-GC
T ss_pred             cccCCCCCEEECCCCccCcch-hhh-hhhhcccccccccccccc--cCcc-ccccccCeEECCCCccCCCCCchhhc-CC
Confidence            444 89999999999776421 123 35999999999   5553  2234 47999999999987422222344444 59


Q ss_pred             CCCcEeeCCCccccc
Q 018571          187 PKLNDVEGDSWEELV  201 (354)
Q Consensus       187 p~L~~L~ls~~~~td  201 (354)
                      |+|+.|++++..+++
T Consensus        90 ~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          90 PRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             TTCCEEECTTSGGGG
T ss_pred             CCCCEEECCCCcCCc
Confidence            999999998876554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.91  E-value=0.00025  Score=64.63  Aligned_cols=122  Identities=12%  Similarity=0.098  Sum_probs=79.8

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHH-------------
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHA-------------  177 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~-------------  177 (354)
                      ++|+.|++++|.+++-+  .+ ..+++|+.|++   .+++  +..+ .+|++|++|+++++.-..-.             
T Consensus       219 ~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~l~~n~l~~--~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         219 TNLDELSLNGNQLKDIG--TL-ASLTNLTDLDLANNQISN--LAPL-SGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             TTCCEEECCSSCCCCCG--GG-GGCTTCSEEECCSSCCCC--CGGG-TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCCCCcc--hh-hcccccchhccccCccCC--CCcc-cccccCCEeeccCcccCCCCccccccccccccc
Confidence            67888888888766643  22 34788888887   4443  2222 35777777777665311100             


Q ss_pred             ------HHHHHHhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCC
Q 018571          178 ------ARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGF  249 (354)
Q Consensus       178 ------sL~~La~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC  249 (354)
                            ++.. ...++.|++|+++++.+.+... ...+++|+.|+  ...||+  +.. ...||+|++      +++.+|
T Consensus       293 ~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~--l~~-l~~l~~L~~------L~l~~N  361 (384)
T d2omza2         293 NENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD--VSS-LANLTNINW------LSAGHN  361 (384)
T ss_dssp             CSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCC--CGG-GGGCTTCCE------EECCSS
T ss_pred             cccccccccc-cchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCC--Chh-HcCCCCCCE------EECCCC
Confidence                  0111 3458999999999988776433 35678899998  335765  333 367999999      999999


Q ss_pred             CCC
Q 018571          250 EVP  252 (354)
Q Consensus       250 ~~s  252 (354)
                      .++
T Consensus       362 ~l~  364 (384)
T d2omza2         362 QIS  364 (384)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            965

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.58  E-value=0.00096  Score=60.52  Aligned_cols=137  Identities=12%  Similarity=0.142  Sum_probs=91.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++++.|+++++.+++..  . ...+++|+.|++   .+++-+  .+ ..+++|++|++++|. +++.  ..+ ..+++|+
T Consensus       197 ~~~~~l~l~~n~i~~~~--~-~~~~~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~l~~n~-l~~~--~~~-~~~~~L~  266 (384)
T d2omza2         197 TNLESLIATNNQISDIT--P-LGILTNLDELSLNGNQLKDIG--TL-ASLTNLTDLDLANNQ-ISNL--APL-SGLTKLT  266 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCG--GG-GGCTTCSEEECCSSC-CCCC--GGG-TTCTTCS
T ss_pred             cccceeeccCCccCCCC--c-ccccCCCCEEECCCCCCCCcc--hh-hcccccchhccccCc-cCCC--Ccc-cccccCC
Confidence            78999999998666532  2 245899999999   666532  23 579999999999985 3331  123 3589999


Q ss_pred             EeeCCCccccchhhh---------------------hccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeec
Q 018571          191 DVEGDSWEELVNTDI---------------------GHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFR  247 (354)
Q Consensus       191 ~L~ls~~~~td~~~i---------------------~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~  247 (354)
                      +|++++...+....+                     ...+++++.|+  ..++++-  .. ...+|+|+.      |++.
T Consensus       267 ~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l--~~-l~~l~~L~~------L~L~  337 (384)
T d2omza2         267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SP-VSSLTKLQR------LFFA  337 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC--GG-GGGCTTCCE------EECC
T ss_pred             EeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC--cc-cccCCCCCE------EECC
Confidence            999887655432110                     23455666666  3455542  22 468999999      9999


Q ss_pred             CCCCCccccccccCCCCcccccccc
Q 018571          248 GFEVPREAFPDITLDDPFVNDIDPS  272 (354)
Q Consensus       248 gC~~s~~al~~v~~~~~~v~~~~~~  272 (354)
                      +|.++.  ++.+ .+.+.++.++..
T Consensus       338 ~n~l~~--l~~l-~~l~~L~~L~l~  359 (384)
T d2omza2         338 NNKVSD--VSSL-ANLTNINWLSAG  359 (384)
T ss_dssp             SSCCCC--CGGG-GGCTTCCEEECC
T ss_pred             CCCCCC--ChhH-cCCCCCCEEECC
Confidence            999653  4433 345677776654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00018  Score=63.90  Aligned_cols=39  Identities=5%  Similarity=-0.062  Sum_probs=23.5

Q ss_pred             ccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          207 HGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       207 ~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      .+.++|+.++  ..+++..... ....+++|+.      |++.++.++
T Consensus       145 ~~l~~l~~l~l~~N~l~~~~~~-~~~~l~~L~~------L~Ls~N~L~  185 (266)
T d1p9ag_         145 TPTPKLEKLSLANNNLTELPAG-LLNGLENLDT------LLLQENSLY  185 (266)
T ss_dssp             TTCTTCCEEECTTSCCSCCCTT-TTTTCTTCCE------EECCSSCCC
T ss_pred             cccccchhcccccccccccCcc-ccccccccce------eecccCCCc
Confidence            3456666666  4445432222 2356788888      899888853

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00026  Score=58.75  Aligned_cols=78  Identities=17%  Similarity=0.233  Sum_probs=54.6

Q ss_pred             CCccEEEeecCCCCHH-HHHHHHHhCCCCcEEEE---eecH-HHHHHHHhcCCCCCEEEecCCCCC-----cHHHHHHHH
Q 018571          114 SSWEILDISGSDVSDF-GLVKVAQMCKSLKAVDI---RITA-AGVSEFLLHCHSLETLRCGGSPRS-----NHAARRCLG  183 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~-gL~~la~~C~~L~~LdL---~ITd-~gl~~La~~Cp~Le~L~L~gC~~I-----tD~sL~~La  183 (354)
                      ++|+.|+|++|+|++. ++......|++|+.|+|   .|++ ..+..+ . ..+|++|++.|.+-.     .......+.
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l-~-~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-K-GLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH-T-TCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh-h-ccccceeecCCCCcCcCcccchhHHHHHH
Confidence            7899999999988774 45555666899999999   5554 223333 3 446899999886432     234566777


Q ss_pred             hcCCCCcEee
Q 018571          184 ILKPKLNDVE  193 (354)
Q Consensus       184 ~~cp~L~~L~  193 (354)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            8889998885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0012  Score=54.48  Aligned_cols=118  Identities=13%  Similarity=0.054  Sum_probs=69.5

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE-eecHHHHHHHHhcCCCCCEEEecCCCCCcH-HHHHHHHhcCCCCcE
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI-RITAAGVSEFLLHCHSLETLRCGGSPRSNH-AARRCLGILKPKLND  191 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL-~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD-~sL~~La~~cp~L~~  191 (354)
                      ...+.||+++..... ++    .....+..++. ..-...+..+..+|++|++|+|+++. +++ ..+......||+|+.
T Consensus        22 ~~~~~Ldls~l~~~~-~l----~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~   95 (162)
T d1koha1          22 GSQQALDLKGLRSDP-DL----VAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKI   95 (162)
T ss_dssp             SSSCCBCCCCCSSCT-TT----TTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCC
T ss_pred             hhhCeeecccCCCCc-hh----hhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccc
Confidence            456777887763211 11    11222233222 22234455566789999999999874 333 233344556899999


Q ss_pred             eeCCCccccchhhh-hccCccccccc------cCCCC--HHHHHHHHhcCCccee
Q 018571          192 VEGDSWEELVNTDI-GHGAQSLRWFV------WPNID--KDSIEMMSTECPRIIV  237 (354)
Q Consensus       192 L~ls~~~~td~~~i-~~~~~~L~~L~------C~~IT--D~~l~~L~~~Cp~L~~  237 (354)
                      |++++..+.+...+ ......|+.|+      |....  ..-...+.+.+|+|+.
T Consensus        96 L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~  150 (162)
T d1koha1          96 LNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLR  150 (162)
T ss_dssp             CCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCE
T ss_pred             cccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCE
Confidence            99988877764432 12334566665      22222  3457788899999998

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.00031  Score=62.52  Aligned_cols=32  Identities=13%  Similarity=0.273  Sum_probs=16.3

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI  146 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL  146 (354)
                      ++++.|+|++++|+.-.-..+. .+++|++|++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~l   63 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFR-ACRNLTILWL   63 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTT-TCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCCCHHHhh-cccccccccc
Confidence            3556666666655432222222 3566666666

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.00089  Score=59.43  Aligned_cols=129  Identities=9%  Similarity=-0.026  Sum_probs=81.8

Q ss_pred             hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571          111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK  186 (354)
Q Consensus       111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c  186 (354)
                      +.. ++|++|++++|.++...... ...+++|+.+++   .++.-.-.. ..++++|++|+++++. ++.-.-.++ .++
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~l~l~~N~l~~i~~~~-f~~~~~L~~L~l~~N~-l~~l~~~~f-~~l  176 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGNR-ISSVPERAF-RGL  176 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-CCEECTTTT-TTC
T ss_pred             hcccccCCEEecCCcccccccccc-cchhcccchhhhccccccccChhH-hccccchhhcccccCc-ccccchhhh-ccc
Confidence            445 88999999998554333222 234789999999   444321112 2478999999999985 332111122 368


Q ss_pred             CCCcEeeCCCccccchh-hhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571          187 PKLNDVEGDSWEELVNT-DIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE  250 (354)
Q Consensus       187 p~L~~L~ls~~~~td~~-~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~  250 (354)
                      ++|+.++++....++.. ..-.++++|++|+  -..++... ......+++|+.      +++.|=+
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~L~~------L~l~~N~  236 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQY------LRLNDNP  236 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCE------EECCSSC
T ss_pred             cccchhhhhhccccccChhHhhhhhhccccccccccccccc-ccccccccccCE------EEecCCC
Confidence            99999999887766432 1235567888887  22333222 233457899999      9998855

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.00026  Score=61.15  Aligned_cols=86  Identities=8%  Similarity=-0.055  Sum_probs=54.7

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHH-HHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSE-FLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL  189 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~-La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L  189 (354)
                      +++++|+|+++.|+.-.-.. ..++++|+.|+|   .+++. +.. ...+++++++|.+.+|..++......+ ..+++|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~-f~~l~~L~~L~ls~n~~~~~-i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~-~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTT-TTTCTTCCEEEEESCTTCCE-ECSSSEESCTTCCEEEEECCTTCCEECTTSE-ECCTTC
T ss_pred             CCCCEEECcCCcCCccChhH-hhccchhhhhhhccccccce-eeccccccccccccccccccccccccccccc-cccccc
Confidence            57899999998765322122 245899999999   22110 100 123688999999888876654322222 458999


Q ss_pred             cEeeCCCccccch
Q 018571          190 NDVEGDSWEELVN  202 (354)
Q Consensus       190 ~~L~ls~~~~td~  202 (354)
                      ++|++++....+.
T Consensus       106 ~~l~l~~~~l~~~  118 (242)
T d1xwdc1         106 QYLLISNTGIKHL  118 (242)
T ss_dssp             CEEEEESCCCCSC
T ss_pred             cccccchhhhccc
Confidence            9998877665543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.07  E-value=0.0021  Score=57.25  Aligned_cols=13  Identities=23%  Similarity=0.184  Sum_probs=9.4

Q ss_pred             cccccccceeeec
Q 018571           10 NKTTSLKKLDLYP   22 (354)
Q Consensus        10 ~~~~~l~~l~~~~   22 (354)
                      +++++++.|+|..
T Consensus        28 ~l~~~l~~L~Ls~   40 (305)
T d1xkua_          28 DLPPDTALLDLQN   40 (305)
T ss_dssp             SCCTTCCEEECCS
T ss_pred             CCCCCCCEEECcC
Confidence            4667788888774

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.99  E-value=0.0039  Score=55.34  Aligned_cols=132  Identities=11%  Similarity=0.045  Sum_probs=74.8

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|+.+++++|+++.-.    ...+++|++|++   .++......+ .+++.+++|++++|. +++..-..+ .++++|+
T Consensus       150 ~~L~~l~l~~n~l~~l~----~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~l~~L~~s~n~-l~~~~~~~~-~~l~~L~  222 (305)
T d1xkua_         150 KKLSYIRIADTNITTIP----QGLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNS-ISAVDNGSL-ANTPHLR  222 (305)
T ss_dssp             TTCCEEECCSSCCCSCC----SSCCTTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSC-CCEECTTTG-GGSTTCC
T ss_pred             cccCccccccCCccccC----cccCCccCEEECCCCcCCCCChhHh-hcccccccccccccc-ccccccccc-cccccce
Confidence            78888999888654321    123688999888   2222222222 578889999988874 332111222 3588899


Q ss_pred             EeeCCCccccchhhhhccCccccccc--cCCCCHHHHH-----HHHhcCCcceecCCCCceeecCCCCCcccccc
Q 018571          191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIE-----MMSTECPRIIVNPKPSPFGFRGFEVPREAFPD  258 (354)
Q Consensus       191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~-----~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~  258 (354)
                      +|+++++.++....--..+++|+.|+  -.+|+.-+-.     .+...-+.|+.      +++.|.|+....++.
T Consensus       223 ~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~------L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         223 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG------VSLFSNPVQYWEIQP  291 (305)
T ss_dssp             EEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE------EECCSSSSCGGGSCG
T ss_pred             eeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCE------EECCCCcCccCcCCH
Confidence            99888876553211123467888776  2235431110     11223355666      888888754333333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.77  E-value=0.002  Score=54.03  Aligned_cols=99  Identities=8%  Similarity=-0.010  Sum_probs=56.0

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      +++++|+|+++.|+..--......+++|++|+|   .++...- ....+.++|++|+|++.. ++.-.-.+ -.++++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-~~~~~~~~L~~L~Ls~N~-l~~l~~~~-F~~l~~L~  105 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGENK-IKEISNKM-FLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSCC-CCEECSSS-STTCTTCC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc-cccccccccceeeecccc-ccccCHHH-HhCCCccc
Confidence            578888888887754222223344788888888   3332111 122467888888888763 22110011 23578888


Q ss_pred             EeeCCCccccc--hhhhhccCccccccc
Q 018571          191 DVEGDSWEELV--NTDIGHGAQSLRWFV  216 (354)
Q Consensus       191 ~L~ls~~~~td--~~~i~~~~~~L~~L~  216 (354)
                      +|++++..+..  .+. ....++|++++
T Consensus       106 ~L~L~~N~l~~i~~~~-f~~l~~L~~l~  132 (192)
T d1w8aa_         106 TLNLYDNQISCVMPGS-FEHLNSLTSLN  132 (192)
T ss_dssp             EEECCSSCCCEECTTS-STTCTTCCEEE
T ss_pred             ccccCCccccccCHHH-hcCCccccccc
Confidence            88887766543  221 13345555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=88.78  E-value=0.057  Score=47.27  Aligned_cols=54  Identities=13%  Similarity=0.058  Sum_probs=34.5

Q ss_pred             hCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccc
Q 018571          137 MCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELV  201 (354)
Q Consensus       137 ~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td  201 (354)
                      .+++|++|+|   .|+.     |....++|++|++++|. +++     |...+++|++|+++++.+..
T Consensus       282 ~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N~-L~~-----l~~~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIE-----LPALPPRLERLIASFNH-LAE-----VPELPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSS
T ss_pred             cCCCCCEEECCCCccCc-----cccccCCCCEEECCCCc-CCc-----cccccCCCCEEECcCCcCCC
Confidence            3678888887   3332     22346788888888763 442     23445678888888776544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.50  E-value=0.024  Score=49.44  Aligned_cols=125  Identities=14%  Similarity=0.088  Sum_probs=82.1

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++++.|+|+++.|+......+. .+++|++|+|   .|+.  +... ..+++|++|+|+++.-...   .....++++|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~-~l~~L~~L~L~~N~l~~--l~~~-~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~L~  103 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQSL---PLLGQTLPALT  103 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCSSC---CCCTTTCTTCC
T ss_pred             cCCCEEECcCCcCCCcCHHHhh-ccccccccccccccccc--cccc-ccccccccccccccccccc---ccccccccccc
Confidence            6899999999987754333344 4899999999   4442  2222 3689999999999853221   12345689999


Q ss_pred             EeeCCCccccchh-hhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571          191 DVEGDSWEELVNT-DIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       191 ~L~ls~~~~td~~-~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      .|++++....... .......+|+.|.  ...++.-. ..+....+.|+.      +++.++.++
T Consensus       104 ~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~------l~l~~N~l~  161 (266)
T d1p9ag_         104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEK------LSLANNNLT  161 (266)
T ss_dssp             EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCE------EECTTSCCS
T ss_pred             cccccccccceeeccccccccccccccccccccceec-cccccccccchh------ccccccccc
Confidence            9999887654422 2234566777776  22333111 123456788999      999999853

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=88.04  E-value=0.017  Score=50.86  Aligned_cols=73  Identities=16%  Similarity=0.081  Sum_probs=42.5

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN  190 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~  190 (354)
                      ++|++|+|++++|++-     .....+|+.|++   .++     .|..--+.|++|+++++. ++.  +..+ .++++|+
T Consensus        58 ~~L~~L~Ls~N~l~~l-----p~~~~~L~~L~l~~n~l~-----~l~~lp~~L~~L~L~~n~-l~~--lp~~-~~l~~L~  123 (353)
T d1jl5a_          58 PHLESLVASCNSLTEL-----PELPQSLKSLLVDNNNLK-----ALSDLPPLLEYLGVSNNQ-LEK--LPEL-QNSSFLK  123 (353)
T ss_dssp             TTCSEEECCSSCCSSC-----CCCCTTCCEEECCSSCCS-----CCCSCCTTCCEEECCSSC-CSS--CCCC-TTCTTCC
T ss_pred             CCCCEEECCCCCCccc-----ccchhhhhhhhhhhcccc-----hhhhhccccccccccccc-ccc--ccch-hhhccce
Confidence            6788888887765532     123467888877   222     111122468888888764 322  1122 3577888


Q ss_pred             EeeCCCcccc
Q 018571          191 DVEGDSWEEL  200 (354)
Q Consensus       191 ~L~ls~~~~t  200 (354)
                      +|++++....
T Consensus       124 ~L~l~~~~~~  133 (353)
T d1jl5a_         124 IIDVDNNSLK  133 (353)
T ss_dssp             EEECCSSCCS
T ss_pred             eecccccccc
Confidence            8887765443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.74  E-value=0.013  Score=49.98  Aligned_cols=18  Identities=0%  Similarity=0.034  Sum_probs=14.1

Q ss_pred             HhcCCcceecCCCCceeecCCCCC
Q 018571          229 STECPRIIVNPKPSPFGFRGFEVP  252 (354)
Q Consensus       229 ~~~Cp~L~~~p~~~~L~l~gC~~s  252 (354)
                      ..+|++|+.      +++.++.++
T Consensus       197 f~~l~~L~~------L~Ls~N~l~  214 (242)
T d1xwdc1         197 FHGASGPVI------LDISRTRIH  214 (242)
T ss_dssp             TTTSCCCSE------EECTTSCCC
T ss_pred             hcCCCCCCE------EECCCCcCC
Confidence            357888998      999888753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.35  E-value=0.047  Score=45.16  Aligned_cols=78  Identities=12%  Similarity=0.057  Sum_probs=51.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE------eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCC
Q 018571          114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI------RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP  187 (354)
Q Consensus       114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL------~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp  187 (354)
                      ++|++|+|+++.++...-.. ....++|+.|+|      .|....    ..+.++|++|+|++.. ++.-.-.+ -.+++
T Consensus        54 ~~L~~L~L~~N~i~~~~~~~-~~~~~~L~~L~Ls~N~l~~l~~~~----F~~l~~L~~L~L~~N~-l~~i~~~~-f~~l~  126 (192)
T d1w8aa_          54 PHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQ-ISCVMPGS-FEHLN  126 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSC-CCEECTTS-STTCT
T ss_pred             ceEeeeeccccccccccccc-cccccccceeeeccccccccCHHH----HhCCCcccccccCCcc-ccccCHHH-hcCCc
Confidence            89999999998655433222 334789999999      333322    2478999999999874 32110011 23578


Q ss_pred             CCcEeeCCCcc
Q 018571          188 KLNDVEGDSWE  198 (354)
Q Consensus       188 ~L~~L~ls~~~  198 (354)
                      +|++|++++..
T Consensus       127 ~L~~l~L~~N~  137 (192)
T d1w8aa_         127 SLTSLNLASNP  137 (192)
T ss_dssp             TCCEEECTTCC
T ss_pred             ccccccccccc
Confidence            99999987653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=82.21  E-value=0.057  Score=47.65  Aligned_cols=40  Identities=10%  Similarity=0.085  Sum_probs=21.1

Q ss_pred             hcCCcceecCCCCceeecCCCCCccccccccCCCCcccccccccccc
Q 018571          230 TECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAV  276 (354)
Q Consensus       230 ~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~~~~~~W~v  276 (354)
                      ..++.|+.      |++.++.++. .+|.-....+.++.++...-..
T Consensus       241 ~~~~~L~~------L~Ls~N~l~g-~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         241 GLSKNLNG------LDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CCCTTCCE------EECCSSCCEE-CCCGGGGGCTTCCEEECCSSEE
T ss_pred             cccccccc------ccCccCeecc-cCChHHhCCCCCCEEECcCCcc
Confidence            34566666      7777776532 2444334445566555544333

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=81.25  E-value=0.046  Score=48.29  Aligned_cols=96  Identities=13%  Similarity=-0.010  Sum_probs=56.9

Q ss_pred             CccEEEeecCCCCHHH-H-HHHHHhCCCCcEEEE----eecHHHH-HHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCC
Q 018571          115 SWEILDISGSDVSDFG-L-VKVAQMCKSLKAVDI----RITAAGV-SEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP  187 (354)
Q Consensus       115 ~L~~LdLs~C~ITD~g-L-~~la~~C~~L~~LdL----~ITd~gl-~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp  187 (354)
                      .+++|+|++++++..+ + ..+.. +++|++|+|    .++.. | ..|. ++++|++|+|+++.-.+..  ......++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~-L~~L~~L~Ls~~N~l~g~-iP~~i~-~L~~L~~L~Ls~N~l~~~~--~~~~~~~~  125 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGP-IPPAIA-KLTQLHYLYITHTNVSGAI--PDFLSQIK  125 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESC-CCGGGG-GCTTCSEEEEEEECCEEEC--CGGGGGCT
T ss_pred             EEEEEECCCCCCCCCCCCChHHhc-Cccccccccccccccccc-cccccc-cccccchhhhccccccccc--cccccchh
Confidence            5899999998655321 2 23444 899999999    23311 1 2343 6889999999987532211  11234578


Q ss_pred             CCcEeeCCCccccch--hhhhccCccccccc
Q 018571          188 KLNDVEGDSWEELVN--TDIGHGAQSLRWFV  216 (354)
Q Consensus       188 ~L~~L~ls~~~~td~--~~i~~~~~~L~~L~  216 (354)
                      +|+.++++.......  .. -..++.|+.++
T Consensus       126 ~L~~l~l~~N~~~~~~p~~-l~~l~~L~~l~  155 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPS-ISSLPNLVGIT  155 (313)
T ss_dssp             TCCEEECCSSEEESCCCGG-GGGCTTCCEEE
T ss_pred             hhcccccccccccccCchh-hccCcccceee
Confidence            899988876543321  11 13445666655